Query 009180
Match_columns 541
No_of_seqs 207 out of 495
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 2.2E-98 7E-103 829.0 33.6 467 1-503 61-571 (571)
2 2b1e_A Exocyst complex compone 100.0 3.1E-87 1.1E-91 737.2 36.5 446 2-499 80-563 (564)
3 2d2s_A Exocyst complex compone 67.6 45 0.0015 31.7 11.4 98 71-189 91-188 (235)
4 2x5h_A ORF 131; viral protein; 42.9 4.8 0.00016 31.8 -0.1 20 461-488 77-96 (97)
5 2cqn_A Formin-binding protein 33.2 32 0.0011 26.9 3.2 22 5-26 8-29 (77)
6 2p7n_A Pathogenicity island 1 30.3 1.4E+02 0.0049 30.4 8.2 74 358-435 179-252 (407)
7 3swh_A MUNC13-1, protein UNC-1 26.5 2.7E+02 0.0092 27.8 9.6 110 241-366 22-134 (341)
8 2ket_A Cathelicidin-6; antimic 24.2 45 0.0015 19.9 1.9 16 420-435 2-17 (27)
9 1cn3_F Fragment of coat protei 22.2 35 0.0012 20.7 1.2 13 517-529 1-13 (29)
10 3pf6_A Hypothetical protein PP 20.6 74 0.0025 22.9 2.8 29 261-296 32-60 (62)
11 2wvq_A Small S protein; prion- 20.1 3.7E+02 0.013 25.0 8.7 116 373-498 38-167 (225)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=2.2e-98 Score=828.99 Aligned_cols=467 Identities=18% Similarity=0.296 Sum_probs=393.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCccCCCCccccccccccccCCCCcccccccccccccCCcccccccCCCHHHHHHHHHHHHH
Q 009180 1 MQTAMKRLEREFYQMLKINGEYLDHESVSVSSSRASRASFSDLEDYEVSETESRISDDAISEMERVSTAAMADLKAIADC 80 (541)
Q Consensus 1 ~~~am~~Le~eF~~lL~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~L~~Ia~~ 80 (541)
+++||.+||+||++||.+|+.|++|+.++...+... +. +....+.++.+|++++++|+.||+|
T Consensus 61 l~~a~~~Le~eF~~lL~~~~~~~~p~~ll~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~L~~Ia~~ 123 (571)
T 2pft_A 61 FERGKESLESEFRSLMTRHSKVVSPVLLLDLISADD--------EL---------EVQEDVVLEHLPESVLRDVVRISRW 123 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTC--------CC---------C--------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCChHHHHhcccccc--------cc---------CccccccccCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999988764432100 00 0001122568999999999999999
Q ss_pred HHhCCCchHHHHHHHHhhHHHHHHHHHhcC------------------------ccccchhhhcccChHHHHHHHHhHHH
Q 009180 81 MISAGYGKECARIYKIIRKSVVDEALYHLG------------------------VERLNFNVIQKMDWDVLEIKIKNWLR 136 (541)
Q Consensus 81 m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~------------------------~e~ls~~~v~k~~w~~le~ki~~wi~ 136 (541)
|+.+||.++|+++|+++|+.+++++|..|+ .++.+..++++ +|+.++.+|..||+
T Consensus 124 m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~wi~ 202 (571)
T 2pft_A 124 LVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-RDDMLDVETDAYIH 202 (571)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc-chHHHHHHHHHHHH
Confidence 999999999999999999999999999994 33334444444 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhhchhhhhh-ccCCCh--hHHHHHHH---HHHHHHh
Q 009180 137 AVRTAVKTVFAGERILCDTVFSGPSSASIRVSCFSQIVKEGALDLLVFPENVA-KCKKTP--EKMFRTLD---LYEAISD 210 (541)
Q Consensus 137 ~~~~av~~l~~~E~~L~~~vf~~~~~~~~~~~~F~~i~~~~~~~ll~f~e~va-~~kr~p--eklf~lLd---mye~L~~ 210 (541)
++.++++ ||++||+||++||+. ..+..||.+||++++.+|++|+++|+ ..+|+| +++|.+|+ +|+.|.+
T Consensus 203 ~~~~~~~-l~~~Er~L~~~vf~~----~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~ 277 (571)
T 2pft_A 203 CVSAFVK-LAQSEYRLLMEIIPE----HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQ 277 (571)
T ss_dssp HHHHHHH-HHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHcCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHH
Confidence 9976554 899999999999986 46788999999999999999999997 577777 66555554 4445999
Q ss_pred hhHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccCC-CCccchhHHHHHHHHHHHHhcHHHH
Q 009180 211 LSPDIASIFSFESTSAVRSQAANSLIRLGEAVRTMLADFEAAIHKDT-SKTPVP-GGGVHPLTRYVMNYIAFLADYSGSL 288 (541)
Q Consensus 211 l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~f~ef~~~I~~~~-s~~~~~-dG~VH~lT~~vmnyl~~L~~y~~~L 288 (541)
++|+|+.+|.|+++ .++.++.+++++|+++++++|.||++.|+.++ ++.+++ ||+|||+|+||||||+.|++|+++|
T Consensus 278 l~p~~~~~f~g~~~-~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l 356 (571)
T 2pft_A 278 TKPEFDQVLQGTAA-STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETA 356 (571)
T ss_dssp HHHHHHHHTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHH
Confidence 99999999999877 57999999999999999999999999999996 666555 9999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhHHHHhhhhhhhhhHHHHHHhhHHHHHHHhhccc
Q 009180 289 AEIDAEWPLTSNSPLPEAYFGSPESSDSISSPIAVRLAWLILVVLCKLDGKAELYKEVAQSYLFLANNLQYVVVKVRSSN 368 (541)
Q Consensus 289 ~~iL~~~~~~~~~~~p~~~~~~~~~~~~~~s~l~~~i~~ii~~L~~nLe~Ksk~ykd~aL~~iFLmNN~~yI~~~v~~S~ 368 (541)
..+|.++....+ .+.. +++.+.++|+.++.+||++|+.|||+|||.|+|++|++||||||+|||+++|++|+
T Consensus 357 ~~il~~~~~~~~------~~~~--~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~ 428 (571)
T 2pft_A 357 GAMLASQETSSS------ATSY--SSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSE 428 (571)
T ss_dssp HHHHHTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTST
T ss_pred HHHHhccCCCcc------cccC--CCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccc
Confidence 999987743210 0000 01113457999999999999999999999999999999999999999999999999
Q ss_pred hhhhhc---hHHHHHHHHHHHHHHHHHHHhcHHHHhccCCCCCC---------CCCChhHHHHHHHHHHHHHHHHHHhcc
Q 009180 369 LKFLLG---EEWIVKHEAKVRQYAANYERMGWDKVFASLPENPT---------AEIPIPQVRNCFRRFNLSFEDTCKRHS 436 (541)
Q Consensus 369 L~~lLG---~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~~~~~---------~~~~r~~iKerfk~FN~~FeE~~~~Q~ 436 (541)
|..+|| ++|+++++.++++|++.| +++|++|++||.+++. ++++|+.|||||++||++|||+|++|+
T Consensus 429 l~~llg~~~~~~~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~ 507 (571)
T 2pft_A 429 LIQLVAVTQKTAERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQK 507 (571)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999 689999999999999999 9999999999988641 123689999999999999999999999
Q ss_pred ceeccChHHHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCCCCCccccCHHHHHHHHHhhhCCCC
Q 009180 437 SWIVSDPKLRDEIKISLAKRIAPVYRDFYEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDLFHGTI 503 (541)
Q Consensus 437 ~w~VpD~~LR~~Lr~~i~~~VvPaY~~F~~ry~~~~~~~~~k~~~KYiKYtpe~le~~L~~LF~g~~ 503 (541)
.|+||||+||++||++|+++|+|+|++||+||++. +|+|||+|||||||||||++|++||+|++
T Consensus 508 ~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~---~~~k~~~KyiKytpe~le~~L~~LFeg~a 571 (571)
T 2pft_A 508 VWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSV---PFTKNPEKYIKYRVEQVGDMIDRLFDTSA 571 (571)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CCCSCHHHHCCCCHHHHHHHHHTSSSCC-
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC---cccCCCCCccccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999996 99999999999999999999999999963
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=3.1e-87 Score=737.24 Aligned_cols=446 Identities=17% Similarity=0.241 Sum_probs=372.9
Q ss_pred HHHHHHHHHHHHHHHHhcCccCCCCccccccccccccCCCCcccccccccccccCCcccccccCCCHHHHHHHHHHHHHH
Q 009180 2 QTAMKRLEREFYQMLKINGEYLDHESVSVSSSRASRASFSDLEDYEVSETESRISDDAISEMERVSTAAMADLKAIADCM 81 (541)
Q Consensus 2 ~~am~~Le~eF~~lL~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~L~~Ia~~m 81 (541)
+.|+.+||.||+.+|. +++|++|.++.+... .++.+|++++.+|+.||+||
T Consensus 80 ~~g~~~L~~~F~~lL~-~s~p~~p~~~i~k~~----------------------------p~p~l~~~~l~~L~~Ia~~m 130 (564)
T 2b1e_A 80 KRSEAQLRVYFISILN-SIKPFDPQINITKKM----------------------------PFPYYEDQQLGALSWILDYF 130 (564)
T ss_dssp HHHHHHHHHHHHHHHT-TSCCCCHHHHHHHTC----------------------------CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hCCCCCHHHhhccCC----------------------------CCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999 589999998744321 27899999999999999999
Q ss_pred HhCCCchHHHHHHHHhhHHHHHHHHHhcCccccchhhhcccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 009180 82 ISAGYGKECARIYKIIRKSVVDEALYHLGVERLNFNVIQKMDWDVLEIKIKNWLRAVRTAVKTVFAGERILCDTVFSGPS 161 (541)
Q Consensus 82 ~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~~e~ls~~~v~k~~w~~le~ki~~wi~~~~~av~~l~~~E~~L~~~vf~~~~ 161 (541)
+.+|+.++|+++|+++|+.+|+++|+.|..........++++|+..+..|..|+.++ ..||.+|+.||++||+.
T Consensus 131 ~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~----~~l~~~E~~L~~~vf~~-- 204 (564)
T 2b1e_A 131 HGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL----LGFIANEKSLVDDLYSQ-- 204 (564)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH----HHHHHHHHHHHHHHSCT--
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH----HHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999965544455667789998888899999987 78999999999999998
Q ss_pred CchhhhhhHHHHHHHHHHH---hhchhhhhhccCCCh-hHHHHHHHHHHHHHhhhHHHHhhccCCchHHHHHHHHHHHHH
Q 009180 162 SASIRVSCFSQIVKEGALD---LLVFPENVAKCKKTP-EKMFRTLDLYEAISDLSPDIASIFSFESTSAVRSQAANSLIR 237 (541)
Q Consensus 162 ~~~~~~~~F~~i~~~~~~~---ll~f~e~va~~kr~p-eklf~lLdmye~L~~l~p~~~~lf~~~~~~~vr~~~~~~l~~ 237 (541)
.++.+..||..|+++++.. ++.|..+ ..+++| +++|.+||||++|.++. .+|.+..+... .++.+++++
T Consensus 205 ~~~~~~~~f~~i~~~~l~~~~~~l~~~~~--~~k~~~~~~~f~~l~~~~~l~~~~----~~~~~~~~~~~-~~~~~~l~~ 277 (564)
T 2b1e_A 205 YTESKPHVLSQILSPLISAYAKLFGANLK--IVRSNLENFGFFSFELVESINDVK----KSLRGKELQNY-NLLQDCTQE 277 (564)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHH--CCC-----CCTHHHHHHHHHHHHH----HHTTTCCCTTH-HHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcChhhcchhHHHHHHHHHHHH----HHHcccccchH-HHHHHHHHH
Confidence 5567889999999999984 4444443 357888 89999999999997765 68887665543 899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-c-cCCCCccchhHHHHHHHHHHHHhcHHHHHHHHhc-----CCCCCCCCCCCcccCC
Q 009180 238 LGEAVRTMLADFEAAIHKDTSK-T-PVPGGGVHPLTRYVMNYIAFLADYSGSLAEIDAE-----WPLTSNSPLPEAYFGS 310 (541)
Q Consensus 238 L~~~~~~~f~ef~~~I~~~~s~-~-~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~-----~~~~~~~~~p~~~~~~ 310 (541)
|+++++++|.||++.|+.+.++ . .|+||||||+|+||||||+.|++|+++|..+|.+ |.+.+ .+..+|..
T Consensus 278 L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~---~~~~~~~~ 354 (564)
T 2b1e_A 278 VRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSN---YKEKEYTL 354 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTT---CCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCccc---cccccccc
Confidence 9999999999999999987654 3 3789999999999999999999999999999964 43211 01112221
Q ss_pred CC---CCCCCCChHHHHHHHHHHHHHHhHHHHh------------------hhhhhhhhHHHHHHhhHHHHHHHhhccch
Q 009180 311 PE---SSDSISSPIAVRLAWLILVVLCKLDGKA------------------ELYKEVAQSYLFLANNLQYVVVKVRSSNL 369 (541)
Q Consensus 311 ~~---~~~~~~s~l~~~i~~ii~~L~~nLe~Ks------------------k~ykd~aL~~iFLmNN~~yI~~~v~~S~L 369 (541)
+. .+..+.++|+.+|.++|++|+.|||+|| +.|+|++|+ +|||||+|||+++|++|+|
T Consensus 355 ~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v~~SeL 433 (564)
T 2b1e_A 355 QNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIVEKSEL 433 (564)
T ss_dssp CC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHHHTSTH
T ss_pred ccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHHhhhhh
Confidence 11 1112345799999999999999999994 679999885 5999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhcHHHHhccCCCCC----C--CCCChhHHHHHHHHHHHHHHHHHHhccceeccCh
Q 009180 370 KFLLGEEWIVKHEAKVRQYAANYERMGWDKVFASLPENP----T--AEIPIPQVRNCFRRFNLSFEDTCKRHSSWIVSDP 443 (541)
Q Consensus 370 ~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~~~~----~--~~~~r~~iKerfk~FN~~FeE~~~~Q~~w~VpD~ 443 (541)
..+||++|+++|+.++++| +.|++++|++|++||.+++ + ++++|+.+||||++||++|||+|++|++|+||||
T Consensus 434 ~~lLg~~~~~~~~~~~~~~-~~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~w~vpD~ 512 (564)
T 2b1e_A 434 NLMLAGEGHSRLERLKKRY-ISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDP 512 (564)
T ss_dssp HHHTTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HhHhcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHhcCcccCcCH
Confidence 9999999999999999999 5999999999999998754 1 3578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCCCCCccccCHHHHHHHHHhhh
Q 009180 444 KLRDEIKISLAKRIAPVYRDFYEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDLF 499 (541)
Q Consensus 444 ~LR~~Lr~~i~~~VvPaY~~F~~ry~~~~~~~~~k~~~KYiKYtpe~le~~L~~LF 499 (541)
+||++||++|+++|+|+|++||+||+. |+|||+|||||||+|||++|++|+
T Consensus 513 ~LR~~Lr~~i~~~v~P~Y~~F~~ry~~-----~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 513 SLKVTLKSEIISLVMPMYERFYSRYKD-----SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG-----GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccCCCCCcccCCHHHHHHHHHHhc
Confidence 999999999999999999999999986 479999999999999999999997
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=67.58 E-value=45 Score=31.70 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHhhHHHHHHHHHhcCccccchhhhcccChHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009180 71 MADLKAIADCMISAGYGKECARIYKIIRKSVVDEALYHLGVERLNFNVIQKMDWDVLEIKIKNWLRAVRTAVKTVFAGER 150 (541)
Q Consensus 71 i~~L~~Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~~e~ls~~~v~k~~w~~le~ki~~wi~~~~~av~~l~~~E~ 150 (541)
...++....+|+.-|.....+..|-+.|+..+...+..++.+. .+..||..+...+-.....=.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~g----------------d~~~Yi~~Ls~i~Fs~I~~t~ 154 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVD----------------NPTNYLTQLAVIRFQTIKKTV 154 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CC----------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccC----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999998875431 134556655443333322222
Q ss_pred HHHhhccCCCCCchhhhhhHHHHHHHHHHHhhchhhhhh
Q 009180 151 ILCDTVFSGPSSASIRVSCFSQIVKEGALDLLVFPENVA 189 (541)
Q Consensus 151 ~L~~~vf~~~~~~~~~~~~F~~i~~~~~~~ll~f~e~va 189 (541)
.--..+|+. .+ ..|+..++..+...+-.|+..+.
T Consensus 155 ~~f~~~F~~--~~---~~~~S~lV~Wa~~eve~f~~l~~ 188 (235)
T 2d2s_A 155 EDFQDIFKE--LG---AKISSILVDWCSDEVDNHFKLID 188 (235)
T ss_dssp HHHHHHSTT--CC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--CC---cccccHHHHHHHHHHHHHHHHHH
Confidence 223448886 22 24677777777777767776665
No 4
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=42.94 E-value=4.8 Score=31.82 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=12.1
Q ss_pred HHHHHHHhcccccCCCCCCCCCccccCH
Q 009180 461 YRDFYEKYRVRVLRDPSTGNEPLVRFAP 488 (541)
Q Consensus 461 Y~~F~~ry~~~~~~~~~k~~~KYiKYtp 488 (541)
-..|++||.+.| +||||+||
T Consensus 77 Ia~FLeKYS~~L--------nkYVkF~~ 96 (97)
T 2x5h_A 77 IAEFLEKYSDFL--------NEYVKFTP 96 (97)
T ss_dssp HHHHHHHTHHHH--------HHHC----
T ss_pred HHHHHHHHHHHH--------HHhhcccc
Confidence 456889988874 48999886
No 5
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=33.22 E-value=32 Score=26.89 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCC
Q 009180 5 MKRLEREFYQMLKINGEYLDHE 26 (541)
Q Consensus 5 m~~Le~eF~~lL~~~~~~~~p~ 26 (541)
+.||+++|+.+|.++..||++.
T Consensus 8 ~rrl~~~F~~mLk~~~p~I~~~ 29 (77)
T 2cqn_A 8 MKRKESAFKSMLKQAAPPIELD 29 (77)
T ss_dssp HHHHHHHHHHHHHTCSSCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCC
Confidence 6799999999999998777755
No 6
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=30.32 E-value=1.4e+02 Score=30.39 Aligned_cols=74 Identities=11% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHhhccchhhhhchHHHHHHHHHHHHHHHHHHHhcHHHHhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhc
Q 009180 358 QYVVVKVRSSNLKFLLGEEWIVKHEAKVRQYAANYERMGWDKVFASLPENPTAEIPIPQVRNCFRRFNLSFEDTCKRH 435 (541)
Q Consensus 358 ~yI~~~v~~S~L~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~~~~~~~~~r~~iKerfk~FN~~FeE~~~~Q 435 (541)
..|+..|.. +..-++++.+..+...++.|.+-|+. .+.+++-|.+-.+++++-..||=..+.|-.+|+++..+.
T Consensus 179 aeLw~~Isd--~I~nIksdYldvYa~IvK~YTdyyQd--fNeaLSklSdyIsAGkDGNkIkFd~~sfk~al~kl~~KY 252 (407)
T 2p7n_A 179 SDLWDMISD--QIGKIKDNYLGVYENVVGQYTDFYKA--FSDILSQMANWIKPGGDGNKVKLNVDALKAALEKLKKDF 252 (407)
T ss_dssp HHHHHHHHH--HHHHHHHHTHHHHHHHHHHHHHHHHH--HHHHHHHHGGGCC---------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhccCCCCCeeeecHHHHHHHHHHHHHhh
Confidence 345555543 33445678888888888888888864 677887776544444444456655667777777776665
No 7
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=26.47 E-value=2.7e+02 Score=27.83 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcCCCCccCCCCccchhHHHHHHHHHHHHhcHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCh
Q 009180 241 AVRTMLADFEAAIHKDTSKTPVPGGGVHPLTRYVMNYIAFLADYSGSLAEIDAEWPLTSNSPLPEAYFGSPESSDSISSP 320 (541)
Q Consensus 241 ~~~~~f~ef~~~I~~~~s~~~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~p~~~~~~~~~~~~~~s~ 320 (541)
+...+..-+..+|+.|.-....+.+.-..-.+.|++-...+....+.+.++ +|+.+ ...+ .=.+.
T Consensus 22 ~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L--~WpD~------~~~~-------~f~t~ 86 (341)
T 3swh_A 22 NEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKL--ECPDP------QIVG-------HYMRR 86 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHS--CCSCH------HHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHC--CCCCH------HHHH-------HHHHH
Confidence 333344444566664432111111112244556666666666555544444 67421 0000 00011
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhh-hh--hhHHHHHHhhHHHHHHHhhc
Q 009180 321 IAVRLAWLILVVLCKLDGKAELYK-EV--AQSYLFLANNLQYVVVKVRS 366 (541)
Q Consensus 321 l~~~i~~ii~~L~~nLe~Ksk~yk-d~--aL~~iFLmNN~~yI~~~v~~ 366 (541)
|+.-|..++..-...++.|-..|- +. ..-+ -+|||+.|+.+.+..
T Consensus 87 l~~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~C-v~lNNie~lR~~L~~ 134 (341)
T 3swh_A 87 FAKTISNVLLQYADIVSKDFASYCSKEKEKVPC-ILMNNTQQLRVQLEK 134 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccchh-hhcccHHHHHHHHHH
Confidence 333333333334445555555442 22 2334 477999999988763
No 8
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=24.21 E-value=45 Score=19.90 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhc
Q 009180 420 CFRRFNLSFEDTCKRH 435 (541)
Q Consensus 420 rfk~FN~~FeE~~~~Q 435 (541)
||++|-..|..++++-
T Consensus 2 rfkrfrkkfkklfkkl 17 (27)
T 2ket_A 2 RFKRFRKKFKKLFKKL 17 (27)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 6888988888888764
No 9
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=22.23 E-value=35 Score=20.69 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=7.3
Q ss_pred CCCCCcccccccC
Q 009180 517 SRTSGSASVSSHS 529 (541)
Q Consensus 517 ~~~~~~~~~~~~~ 529 (541)
|+-||||...||.
T Consensus 1 ggggggggaashq 13 (29)
T 1cn3_F 1 GGGGGGGGAASHQ 13 (29)
T ss_dssp CCCCCCSTTTCCC
T ss_pred CCCCCCCcccccc
Confidence 3445566666664
No 10
>3pf6_A Hypothetical protein PP-LUZ7_GP033; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.60A {Pseudomonas phage LUZ7}
Probab=20.63 E-value=74 Score=22.86 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=21.7
Q ss_pred cCCCCccchhHHHHHHHHHHHHhcHHHHHHHHhcCC
Q 009180 261 PVPGGGVHPLTRYVMNYIAFLADYSGSLAEIDAEWP 296 (541)
Q Consensus 261 ~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~ 296 (541)
..|+|+-|. |++.|..|.++|-.++.+|.
T Consensus 32 l~pggshhd-------fmra~mgyhntl~~~~~e~~ 60 (62)
T 3pf6_A 32 LFPGGTHHD-------FMRALMGYHNTLVKVMEEQC 60 (62)
T ss_dssp HSCSSCHHH-------HHHHHHHHHHHHHHHHHHCC
T ss_pred hCCCCchHH-------HHHHHHhhhHHHHHHHHhhc
Confidence 457888886 66677777778878887774
No 11
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=20.07 E-value=3.7e+02 Score=25.04 Aligned_cols=116 Identities=10% Similarity=0.214 Sum_probs=62.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhcHHHHhccCCCCC--C---CCCChhHHHHHHHHHHHHHHHHHHhccceec--cChHH
Q 009180 373 LGEEWIVKHEAKVRQYAANYERMGWDKVFASLPENP--T---AEIPIPQVRNCFRRFNLSFEDTCKRHSSWIV--SDPKL 445 (541)
Q Consensus 373 LG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~~~~--~---~~~~r~~iKerfk~FN~~FeE~~~~Q~~w~V--pD~~L 445 (541)
+|.++.. ..-+++-.....+ .|+..+....+.. . .....+.++.-+..--.-|+++-+.+..|.. |++++
T Consensus 38 f~~D~~~-l~lkLdve~~RL~--~WG~avGL~~~~~~~~~l~~~~~~~~v~~iL~~I~~lf~~~~~l~~Ry~~~~~~~~~ 114 (225)
T 2wvq_A 38 FGRDYER-CQLRLDIAKARLS--RWGEAVKINDDPRFHSDAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDL 114 (225)
T ss_dssp GGGGHHH-HHHHHHHHHHHHH--HHHHHTTTTTCGGGGCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGG
T ss_pred hhHHHHH-HHHHHHHHHHHHH--HHHHHhCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Confidence 4555432 2333333333443 5999998876542 1 1122456777777777777777777766665 33222
Q ss_pred HHHHHHHHHHHHhHHHHHH-------HHHhcccccCCCCCCCCCccccCHHHHHHHHHhh
Q 009180 446 RDEIKISLAKRIAPVYRDF-------YEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDL 498 (541)
Q Consensus 446 R~~Lr~~i~~~VvPaY~~F-------~~ry~~~~~~~~~k~~~KYiKYtpe~le~~L~~L 498 (541)
-. + . ..-+-|+++.. ..+-+.. ...+..-+++-|+.+.++.+|.++
T Consensus 115 ~~-~--~-~~~l~~~~~~~~~~~r~~~~~rq~~---~s~~~r~~Wai~Dk~~F~~LV~~i 167 (225)
T 2wvq_A 115 VV-F--E-DKDMKPIGRALHRRLNDLVSRRQKQ---TSLAKKTAWALYDGKSLEKIVDQV 167 (225)
T ss_dssp CB-C--C-GGGSCHHHHHHHHHHHHHHHHHSCC---CCSCCCCCEEECSHHHHHHHHHHH
T ss_pred cc-c--C-hhhHHHHHHHHHHHHHHHHHhcccc---CCccceeeeeeechHHHHHHHHHH
Confidence 11 0 0 11222333333 3332332 122334588899999999988765
Done!