Query 009181
Match_columns 541
No_of_seqs 383 out of 3642
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 20:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mc6_A Sphingosine-1-phosphate 100.0 2.7E-59 9.4E-64 502.9 39.5 465 69-541 2-478 (497)
2 3mad_A Sphingosine-1-phosphate 100.0 1.7E-56 5.9E-61 483.1 41.9 433 98-540 66-505 (514)
3 4e1o_A HDC, histidine decarbox 100.0 5.7E-49 2E-53 420.6 39.2 407 82-503 32-479 (481)
4 3k40_A Aromatic-L-amino-acid d 100.0 6.9E-49 2.4E-53 419.1 37.9 407 82-504 27-473 (475)
5 2dgk_A GAD-beta, GADB, glutama 100.0 8.6E-47 2.9E-51 400.9 44.3 397 97-508 12-440 (452)
6 3vp6_A Glutamate decarboxylase 100.0 6.2E-47 2.1E-51 407.4 38.1 404 84-504 49-507 (511)
7 3hbx_A GAD 1, glutamate decarb 100.0 3.6E-45 1.2E-49 393.0 46.5 396 99-509 28-451 (502)
8 1js3_A DDC;, DOPA decarboxylas 100.0 6.5E-46 2.2E-50 397.8 39.4 409 82-506 27-478 (486)
9 2okj_A Glutamate decarboxylase 100.0 4.6E-45 1.6E-49 392.9 37.6 401 83-502 45-502 (504)
10 2jis_A Cysteine sulfinic acid 100.0 7.3E-45 2.5E-49 392.2 33.4 397 83-501 64-514 (515)
11 2qma_A Diaminobutyrate-pyruvat 100.0 1.4E-42 4.9E-47 372.8 40.7 380 102-502 72-496 (497)
12 3f9t_A TDC, L-tyrosine decarbo 100.0 2.4E-39 8.1E-44 335.8 41.8 380 102-500 4-396 (397)
13 2z67_A O-phosphoseryl-tRNA(SEC 100.0 2.3E-35 8E-40 313.2 24.8 359 101-499 56-455 (456)
14 3bc8_A O-phosphoseryl-tRNA(SEC 100.0 1.1E-34 3.7E-39 301.3 25.8 365 101-505 21-446 (450)
15 1wyu_B Glycine dehydrogenase s 100.0 8.1E-33 2.8E-37 295.1 37.3 374 100-501 39-440 (474)
16 4hvk_A Probable cysteine desul 100.0 1.5E-31 5.1E-36 275.6 33.6 309 166-504 38-375 (382)
17 1wyu_A Glycine dehydrogenase ( 100.0 5.3E-31 1.8E-35 278.3 38.4 358 100-499 38-437 (438)
18 4eb5_A Probable cysteine desul 100.0 3E-31 1E-35 273.9 33.5 309 166-504 38-375 (382)
19 3lvm_A Cysteine desulfurase; s 100.0 9.1E-30 3.1E-34 266.9 38.1 309 167-504 64-401 (423)
20 3zrp_A Serine-pyruvate aminotr 100.0 4.4E-31 1.5E-35 272.7 25.5 313 166-505 30-366 (384)
21 3nnk_A Ureidoglycine-glyoxylat 100.0 2.4E-30 8.3E-35 269.9 30.5 314 166-504 41-392 (411)
22 3isl_A Purine catabolism prote 100.0 1.1E-30 3.9E-35 272.9 27.8 311 167-503 40-391 (416)
23 1eg5_A Aminotransferase; PLP-d 100.0 2.4E-29 8.3E-34 259.6 36.9 308 168-506 41-380 (384)
24 1t3i_A Probable cysteine desul 100.0 5.8E-30 2E-34 267.7 32.1 312 170-504 71-415 (420)
25 3e9k_A Kynureninase; kynurenin 100.0 6.1E-31 2.1E-35 279.9 25.0 334 144-502 83-461 (465)
26 2dr1_A PH1308 protein, 386AA l 100.0 2.9E-30 9.8E-35 266.9 29.0 329 146-506 33-383 (386)
27 1kmj_A Selenocysteine lyase; p 100.0 8.6E-30 2.9E-34 265.0 32.2 311 169-502 65-405 (406)
28 3vax_A Putative uncharacterize 100.0 5.4E-30 1.8E-34 266.5 29.7 309 167-501 59-399 (400)
29 2z9v_A Aspartate aminotransfer 100.0 9.5E-30 3.2E-34 263.9 30.4 327 145-503 21-372 (392)
30 1elu_A L-cysteine/L-cystine C- 100.0 1.3E-29 4.5E-34 262.3 31.1 308 166-498 54-388 (390)
31 2huf_A Alanine glyoxylate amin 100.0 1.3E-29 4.3E-34 263.1 29.9 330 146-506 32-387 (393)
32 2yrr_A Aminotransferase, class 100.0 1.6E-30 5.4E-35 265.2 22.5 321 146-501 13-352 (353)
33 1iug_A Putative aspartate amin 100.0 1.1E-29 3.8E-34 259.2 27.7 320 145-502 13-348 (352)
34 3kgw_A Alanine-glyoxylate amin 100.0 3.6E-29 1.2E-33 259.2 28.6 313 166-504 51-390 (393)
35 3cai_A Possible aminotransfera 100.0 5.1E-29 1.7E-33 259.8 27.8 304 169-498 67-405 (406)
36 1vjo_A Alanine--glyoxylate ami 100.0 3.4E-29 1.2E-33 259.9 25.1 323 145-499 46-392 (393)
37 3ffr_A Phosphoserine aminotran 100.0 3.8E-29 1.3E-33 256.0 24.4 303 165-499 37-361 (362)
38 2ch1_A 3-hydroxykynurenine tra 100.0 2.3E-28 7.9E-33 253.8 29.9 311 166-504 46-385 (396)
39 3hl2_A O-phosphoseryl-tRNA(SEC 100.0 1.8E-28 6.2E-33 250.8 26.9 375 101-508 39-467 (501)
40 3f0h_A Aminotransferase; RER07 100.0 2.6E-28 9E-33 251.5 28.2 310 166-500 47-372 (376)
41 2bkw_A Alanine-glyoxylate amin 100.0 1E-28 3.6E-33 255.1 20.9 311 166-501 33-383 (385)
42 1m32_A 2-aminoethylphosphonate 100.0 5.6E-28 1.9E-32 247.5 25.9 305 171-501 37-364 (366)
43 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 2.4E-28 8.4E-33 251.2 22.0 295 170-502 52-370 (371)
44 1j32_A Aspartate aminotransfer 100.0 2E-27 6.7E-32 246.3 28.0 307 161-502 61-387 (388)
45 3a9z_A Selenocysteine lyase; P 100.0 7.1E-27 2.4E-31 245.7 31.6 316 166-504 56-430 (432)
46 1qz9_A Kynureninase; kynurenin 100.0 1.1E-26 3.7E-31 243.0 29.2 302 171-503 71-403 (416)
47 3dzz_A Putative pyridoxal 5'-p 100.0 7.5E-27 2.6E-31 241.8 27.7 324 147-502 44-389 (391)
48 3euc_A Histidinol-phosphate am 100.0 6.1E-27 2.1E-31 240.8 25.0 282 175-499 71-365 (367)
49 1v2d_A Glutamine aminotransfer 100.0 1.2E-26 4.3E-31 239.8 26.1 295 175-506 65-375 (381)
50 1o4s_A Aspartate aminotransfer 100.0 1.2E-26 4.2E-31 240.8 25.3 315 148-500 59-387 (389)
51 3e77_A Phosphoserine aminotran 100.0 1E-26 3.5E-31 238.9 24.1 305 166-501 53-374 (377)
52 1svv_A Threonine aldolase; str 99.9 4.8E-27 1.7E-31 240.1 21.3 311 146-502 28-358 (359)
53 3g0t_A Putative aminotransfera 99.9 4.3E-26 1.5E-30 240.0 29.1 320 162-501 77-436 (437)
54 3ffh_A Histidinol-phosphate am 99.9 1.4E-25 4.8E-30 230.2 31.9 284 174-498 70-362 (363)
55 3ke3_A Putative serine-pyruvat 99.9 1.2E-26 4.2E-31 240.1 24.1 307 166-503 30-377 (379)
56 2w8t_A SPT, serine palmitoyltr 99.9 7.3E-26 2.5E-30 238.0 30.0 299 170-507 108-420 (427)
57 1gd9_A Aspartate aminotransfer 99.9 3.4E-26 1.1E-30 237.1 26.9 308 162-502 58-386 (389)
58 1xi9_A Putative transaminase; 99.9 1.8E-26 6.2E-31 240.8 25.0 308 162-503 73-404 (406)
59 4dq6_A Putative pyridoxal phos 99.9 5.5E-26 1.9E-30 235.3 28.1 320 147-499 49-390 (391)
60 2fnu_A Aminotransferase; prote 99.9 5.8E-26 2E-30 233.8 27.9 302 173-503 34-373 (375)
61 3nra_A Aspartate aminotransfer 99.9 1.1E-26 3.8E-31 242.0 22.1 304 166-503 77-406 (407)
62 1b5p_A Protein (aspartate amin 99.9 6.5E-26 2.2E-30 235.0 26.8 302 162-500 63-383 (385)
63 1v72_A Aldolase; PLP-dependent 99.9 3.3E-26 1.1E-30 233.7 24.2 293 170-502 42-353 (356)
64 2gb3_A Aspartate aminotransfer 99.9 1E-25 3.5E-30 235.4 28.4 313 154-504 66-404 (409)
65 1c7n_A Cystalysin; transferase 99.9 6.9E-26 2.4E-30 235.6 26.8 303 169-504 68-395 (399)
66 3cq5_A Histidinol-phosphate am 99.9 4.3E-25 1.5E-29 227.4 32.2 286 170-499 72-365 (369)
67 2zc0_A Alanine glyoxylate tran 99.9 9.1E-26 3.1E-30 235.3 27.0 307 163-503 71-405 (407)
68 3ly1_A Putative histidinol-pho 99.9 2.9E-25 1E-29 226.9 29.9 288 174-501 54-351 (354)
69 3dyd_A Tyrosine aminotransfera 99.9 2E-25 6.8E-30 234.7 29.1 305 163-503 92-425 (427)
70 1u08_A Hypothetical aminotrans 99.9 8E-26 2.7E-30 234.1 25.5 300 162-497 62-385 (386)
71 2z61_A Probable aspartate amin 99.9 9.2E-26 3.2E-30 232.3 25.4 295 162-500 61-369 (370)
72 3get_A Histidinol-phosphate am 99.9 3.5E-25 1.2E-29 227.5 29.6 286 175-499 69-364 (365)
73 3aow_A Putative uncharacterize 99.9 2.7E-25 9.2E-30 235.2 29.2 309 162-504 113-447 (448)
74 1fg7_A Histidinol phosphate am 99.9 5.8E-25 2E-29 225.5 30.8 280 175-498 62-354 (356)
75 3l8a_A METC, putative aminotra 99.9 5.5E-26 1.9E-30 238.5 23.2 302 170-500 99-420 (421)
76 2o0r_A RV0858C (N-succinyldiam 99.9 5.5E-26 1.9E-30 237.6 23.1 307 162-502 57-396 (411)
77 1bw0_A TAT, protein (tyrosine 99.9 4.4E-25 1.5E-29 230.9 29.7 317 163-504 71-415 (416)
78 3ele_A Amino transferase; RER0 99.9 2.7E-25 9.1E-30 231.1 27.5 309 163-503 72-397 (398)
79 3a2b_A Serine palmitoyltransfe 99.9 6.8E-26 2.3E-30 235.6 22.7 294 168-502 85-392 (398)
80 3kax_A Aminotransferase, class 99.9 3.2E-25 1.1E-29 228.8 27.5 319 147-499 41-382 (383)
81 1vp4_A Aminotransferase, putat 99.9 1E-25 3.5E-30 236.7 23.5 310 162-505 80-421 (425)
82 3tqx_A 2-amino-3-ketobutyrate 99.9 6.6E-26 2.3E-30 235.3 21.3 294 170-502 87-396 (399)
83 1d2f_A MALY protein; aminotran 99.9 6.4E-25 2.2E-29 227.7 28.1 301 169-502 65-389 (390)
84 1yiz_A Kynurenine aminotransfe 99.9 2.6E-25 9E-30 233.6 25.3 304 163-499 73-426 (429)
85 1rv3_A Serine hydroxymethyltra 99.9 2.3E-25 7.9E-30 237.9 25.1 313 164-501 83-430 (483)
86 2c0r_A PSAT, phosphoserine ami 99.9 5.5E-25 1.9E-29 225.8 26.8 300 166-502 44-361 (362)
87 2dou_A Probable N-succinyldiam 99.9 6.3E-25 2.1E-29 226.6 26.8 316 148-499 43-375 (376)
88 2c81_A Glutamine-2-deoxy-scyll 99.9 2.8E-25 9.5E-30 232.8 24.4 307 168-503 39-415 (418)
89 3piu_A 1-aminocyclopropane-1-c 99.9 7.9E-25 2.7E-29 230.6 28.0 304 166-503 85-433 (435)
90 3ftb_A Histidinol-phosphate am 99.9 1.8E-24 6.1E-29 221.5 29.9 285 174-501 64-360 (361)
91 2zyj_A Alpha-aminodipate amino 99.9 2.7E-25 9.2E-30 231.1 23.2 294 176-503 79-394 (397)
92 1b9h_A AHBA synthase, protein 99.9 7E-25 2.4E-29 227.2 26.1 296 175-501 42-387 (388)
93 3qm2_A Phosphoserine aminotran 99.9 5.4E-26 1.8E-30 234.7 16.9 299 167-501 68-384 (386)
94 3op7_A Aminotransferase class 99.9 6.1E-25 2.1E-29 226.5 24.9 304 159-503 55-372 (375)
95 3fdb_A Beta C-S lyase, putativ 99.9 4E-25 1.4E-29 227.7 23.1 297 170-501 61-375 (377)
96 3h14_A Aminotransferase, class 99.9 2.3E-24 7.8E-29 223.6 28.7 316 148-503 49-383 (391)
97 2x3l_A ORN/Lys/Arg decarboxyla 99.9 2.7E-26 9.2E-31 242.6 14.3 290 172-503 58-354 (446)
98 2x5d_A Probable aminotransfera 99.9 1.5E-24 5.2E-29 226.6 27.4 322 148-504 55-400 (412)
99 1lc5_A COBD, L-threonine-O-3-p 99.9 3E-24 1E-28 220.6 28.4 285 175-502 63-360 (364)
100 1fc4_A 2-amino-3-ketobutyrate 99.9 5.8E-25 2E-29 228.8 23.2 295 171-505 90-400 (401)
101 1w23_A Phosphoserine aminotran 99.9 3.6E-25 1.2E-29 226.7 20.5 303 166-501 43-359 (360)
102 3uwc_A Nucleotide-sugar aminot 99.9 5.1E-25 1.7E-29 226.9 21.6 316 148-501 21-370 (374)
103 2r2n_A Kynurenine/alpha-aminoa 99.9 9.6E-24 3.3E-28 221.7 31.4 308 166-502 77-424 (425)
104 3m5u_A Phosphoserine aminotran 99.9 6E-25 2.1E-29 224.8 21.6 298 166-501 45-359 (361)
105 3hdo_A Histidinol-phosphate am 99.9 4.1E-24 1.4E-28 219.2 27.7 279 175-500 69-353 (360)
106 1iay_A ACC synthase 2, 1-amino 99.9 1.3E-24 4.5E-29 228.3 24.5 298 168-501 84-426 (428)
107 3frk_A QDTB; aminotransferase, 99.9 5.9E-25 2E-29 226.6 21.3 292 175-501 40-367 (373)
108 2o1b_A Aminotransferase, class 99.9 1.1E-24 3.8E-29 227.3 22.9 301 166-501 84-402 (404)
109 1c4k_A Protein (ornithine deca 99.9 8.4E-25 2.9E-29 242.1 22.9 310 173-504 175-568 (730)
110 2dkj_A Serine hydroxymethyltra 99.9 4.1E-24 1.4E-28 222.5 25.8 299 167-501 65-387 (407)
111 3b46_A Aminotransferase BNA3; 99.9 6.5E-25 2.2E-29 232.2 19.9 319 147-498 74-443 (447)
112 2vi8_A Serine hydroxymethyltra 99.9 3.4E-24 1.2E-28 223.0 25.0 300 167-503 65-388 (405)
113 1bs0_A Protein (8-amino-7-oxon 99.9 2.3E-24 8E-29 222.8 23.4 289 171-498 84-383 (384)
114 3dr4_A Putative perosamine syn 99.9 2.8E-24 9.6E-29 223.0 23.6 295 175-499 60-390 (391)
115 3p1t_A Putative histidinol-pho 99.9 3.8E-23 1.3E-27 209.6 31.3 275 175-499 55-334 (337)
116 3jtx_A Aminotransferase; NP_28 99.9 5.4E-24 1.8E-28 220.9 25.0 317 147-499 47-395 (396)
117 3ezs_A Aminotransferase ASPB; 99.9 3.9E-24 1.3E-28 220.4 23.7 313 146-501 39-374 (376)
118 2oga_A Transaminase; PLP-depen 99.9 1.3E-23 4.3E-28 218.8 26.0 297 174-503 66-397 (399)
119 2x5f_A Aspartate_tyrosine_phen 99.9 7.3E-24 2.5E-28 222.8 24.3 310 162-502 83-429 (430)
120 3fvs_A Kynurenine--oxoglutarat 99.9 4.7E-24 1.6E-28 223.4 22.8 306 162-501 62-421 (422)
121 3kki_A CAI-1 autoinducer synth 99.9 2.7E-24 9.3E-29 224.5 20.9 291 170-501 103-403 (409)
122 2cb1_A O-acetyl homoserine sul 99.9 3E-23 1E-27 217.0 28.7 285 173-497 58-411 (412)
123 2po3_A 4-dehydrase; external a 99.9 1.5E-22 5.2E-27 212.4 33.4 294 175-504 56-388 (424)
124 1mdo_A ARNB aminotransferase; 99.9 2.3E-23 8E-28 215.9 26.3 296 175-504 43-388 (393)
125 3n0l_A Serine hydroxymethyltra 99.9 4.5E-23 1.5E-27 215.3 28.7 300 166-501 66-388 (417)
126 3tcm_A Alanine aminotransferas 99.9 4.9E-23 1.7E-27 220.9 29.4 313 159-504 126-496 (500)
127 2fyf_A PSAT, phosphoserine ami 99.9 6.8E-24 2.3E-28 220.7 21.7 300 166-501 73-397 (398)
128 3ppl_A Aspartate aminotransfer 99.9 3E-23 1E-27 218.0 26.6 299 176-503 83-421 (427)
129 1o69_A Aminotransferase; struc 99.9 3.8E-23 1.3E-27 214.9 27.1 296 174-501 35-386 (394)
130 1jg8_A L-ALLO-threonine aldola 99.9 4.1E-24 1.4E-28 217.7 19.1 288 175-502 42-346 (347)
131 2bwn_A 5-aminolevulinate synth 99.9 1.1E-23 3.6E-28 219.3 22.1 294 173-502 93-400 (401)
132 2vyc_A Biodegradative arginine 99.9 2.5E-23 8.7E-28 232.2 26.1 299 174-503 208-606 (755)
133 3ez1_A Aminotransferase MOCR f 99.9 5.8E-23 2E-27 215.3 27.2 303 175-504 74-417 (423)
134 2rfv_A Methionine gamma-lyase; 99.9 4.3E-23 1.5E-27 214.8 25.6 281 171-498 64-396 (398)
135 3rq1_A Aminotransferase class 99.9 2.4E-23 8.1E-28 218.0 23.6 328 146-503 59-416 (418)
136 1e5e_A MGL, methionine gamma-l 99.9 1.6E-22 5.3E-27 211.1 29.6 280 174-504 65-397 (404)
137 3qhx_A Cystathionine gamma-syn 99.9 8.5E-23 2.9E-27 212.2 27.3 272 174-494 69-390 (392)
138 3e2y_A Kynurenine-oxoglutarate 99.9 2.2E-23 7.5E-28 217.3 22.6 303 163-497 57-408 (410)
139 2a7v_A Serine hydroxymethyltra 99.9 3.4E-23 1.2E-27 219.8 24.3 309 168-502 97-441 (490)
140 3ihj_A Alanine aminotransferas 99.9 1.7E-22 5.9E-27 216.4 28.9 325 149-504 111-495 (498)
141 1pff_A Methionine gamma-lyase; 99.9 6E-23 2.1E-27 207.9 23.8 275 175-498 2-330 (331)
142 3if2_A Aminotransferase; YP_26 99.9 3.9E-23 1.3E-27 218.0 23.2 308 162-504 78-442 (444)
143 1qgn_A Protein (cystathionine 99.9 1.2E-22 4E-27 213.8 26.5 276 173-501 116-444 (445)
144 1cs1_A CGS, protein (cystathio 99.9 3.8E-22 1.3E-26 206.7 30.0 276 174-498 55-383 (386)
145 1gc0_A Methionine gamma-lyase; 99.9 2.7E-22 9.2E-27 208.8 28.8 278 173-498 67-397 (398)
146 3d6k_A Putative aminotransfera 99.9 1.8E-22 6.1E-27 211.8 26.7 311 162-504 71-420 (422)
147 3t18_A Aminotransferase class 99.9 5.3E-23 1.8E-27 214.9 22.3 323 146-504 58-412 (413)
148 3ndn_A O-succinylhomoserine su 99.9 2E-22 6.7E-27 210.8 26.5 275 173-499 83-413 (414)
149 1uu1_A Histidinol-phosphate am 99.9 6.2E-23 2.1E-27 208.4 22.1 269 174-498 59-334 (335)
150 3g7q_A Valine-pyruvate aminotr 99.9 1.1E-22 3.9E-27 212.4 24.2 325 146-504 49-415 (417)
151 3fkd_A L-threonine-O-3-phospha 99.9 1.3E-22 4.4E-27 207.2 23.9 278 175-501 54-341 (350)
152 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.3E-21 4.3E-26 203.0 31.3 295 175-495 38-389 (390)
153 3qgu_A LL-diaminopimelate amin 99.9 3.6E-22 1.2E-26 211.0 27.7 322 145-501 88-439 (449)
154 4f4e_A Aromatic-amino-acid ami 99.9 2.3E-23 8E-28 218.3 17.5 322 146-499 70-419 (420)
155 3ruy_A Ornithine aminotransfer 99.9 9.8E-22 3.4E-26 203.8 29.4 289 173-499 80-391 (392)
156 3ri6_A O-acetylhomoserine sulf 99.9 1.3E-22 4.5E-27 212.8 22.9 290 166-499 81-429 (430)
157 3gbx_A Serine hydroxymethyltra 99.9 2.1E-22 7.3E-27 210.3 24.5 296 170-501 75-395 (420)
158 3fsl_A Aromatic-amino-acid ami 99.9 2.1E-22 7.1E-27 209.0 24.1 321 146-498 47-396 (397)
159 2eh6_A Acoat, acetylornithine 99.9 5.6E-22 1.9E-26 204.1 25.5 281 174-498 73-374 (375)
160 3nyt_A Aminotransferase WBPE; 99.9 2.2E-22 7.5E-27 207.0 22.1 312 146-498 16-360 (367)
161 2ctz_A O-acetyl-L-homoserine s 99.9 6.4E-22 2.2E-26 207.6 25.5 286 174-499 61-420 (421)
162 3acz_A Methionine gamma-lyase; 99.9 2.1E-21 7.3E-26 201.4 29.0 274 173-499 61-386 (389)
163 3cog_A Cystathionine gamma-lya 99.9 2.8E-22 9.7E-27 209.0 22.4 273 175-497 71-397 (403)
164 3f6t_A Aspartate aminotransfer 99.9 3.8E-22 1.3E-26 215.4 23.5 337 145-504 118-527 (533)
165 3lws_A Aromatic amino acid bet 99.9 3.1E-22 1.1E-26 204.7 21.7 285 175-499 51-356 (357)
166 2ez2_A Beta-tyrosinase, tyrosi 99.9 9.8E-22 3.4E-26 208.1 25.6 309 163-504 71-433 (456)
167 3ecd_A Serine hydroxymethyltra 99.9 8.8E-22 3E-26 205.9 24.8 297 171-503 78-398 (425)
168 7aat_A Aspartate aminotransfer 99.9 3.8E-22 1.3E-26 207.5 21.8 318 146-499 49-400 (401)
169 3ei9_A LL-diaminopimelate amin 99.9 5.6E-22 1.9E-26 208.5 23.0 319 144-501 74-427 (432)
170 1vef_A Acetylornithine/acetyl- 99.9 1.3E-21 4.5E-26 203.0 24.8 287 171-499 87-394 (395)
171 3b1d_A Betac-S lyase; HET: PLP 99.8 7.3E-25 2.5E-29 227.6 0.0 303 169-500 68-391 (392)
172 1ibj_A CBL, cystathionine beta 99.9 5E-22 1.7E-26 210.5 21.7 280 172-501 134-461 (464)
173 2fq6_A Cystathionine beta-lyas 99.9 7.5E-21 2.6E-25 198.7 29.8 273 175-497 86-413 (415)
174 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 4.4E-21 1.5E-25 202.1 28.0 296 174-500 65-434 (437)
175 3pj0_A LMO0305 protein; struct 99.9 1.7E-21 5.8E-26 199.3 23.5 286 174-498 51-358 (359)
176 3meb_A Aspartate aminotransfer 99.9 8.1E-22 2.8E-26 208.5 21.6 318 144-501 68-443 (448)
177 3ju7_A Putative PLP-dependent 99.9 2.4E-21 8.1E-26 200.2 24.6 300 167-501 36-374 (377)
178 1n8p_A Cystathionine gamma-lya 99.9 1.5E-21 5.3E-26 202.8 23.2 275 173-498 57-391 (393)
179 1ax4_A Tryptophanase; tryptoph 99.9 1.9E-21 6.3E-26 206.5 24.0 312 166-504 75-443 (467)
180 1yaa_A Aspartate aminotransfer 99.9 1.6E-22 5.6E-27 211.1 15.6 321 146-501 50-410 (412)
181 1ajs_A Aspartate aminotransfer 99.9 7.6E-22 2.6E-26 206.0 19.6 324 146-502 51-411 (412)
182 4adb_A Succinylornithine trans 99.9 5.8E-21 2E-25 198.7 25.9 295 172-504 82-402 (406)
183 2ord_A Acoat, acetylornithine 99.9 4.9E-21 1.7E-25 198.9 23.0 289 171-501 82-396 (397)
184 3nx3_A Acoat, acetylornithine 99.9 2E-20 6.9E-25 194.1 27.3 294 171-501 78-394 (395)
185 3h7f_A Serine hydroxymethyltra 99.9 7.5E-21 2.6E-25 201.0 24.2 300 167-502 87-414 (447)
186 2q7w_A Aspartate aminotransfer 99.9 1.2E-21 4.1E-26 203.2 17.7 300 162-498 64-395 (396)
187 1s0a_A Adenosylmethionine-8-am 99.9 1.7E-20 5.8E-25 197.0 25.3 303 173-502 88-424 (429)
188 3asa_A LL-diaminopimelate amin 99.9 7E-21 2.4E-25 198.1 21.9 295 167-504 75-395 (400)
189 2pb2_A Acetylornithine/succiny 99.9 2.6E-20 8.9E-25 195.2 26.1 295 171-503 99-419 (420)
190 2aeu_A Hypothetical protein MJ 99.9 2.1E-20 7.1E-25 192.9 24.6 290 171-504 58-373 (374)
191 2ay1_A Aroat, aromatic amino a 99.9 4.7E-21 1.6E-25 198.7 19.4 299 162-498 64-392 (394)
192 3nmy_A Xometc, cystathionine g 99.9 2.1E-20 7.2E-25 194.5 23.5 279 166-500 66-397 (400)
193 3n75_A LDC, lysine decarboxyla 99.9 2.8E-20 9.6E-25 204.4 24.6 299 173-504 197-562 (715)
194 1z7d_A Ornithine aminotransfer 99.9 1.9E-19 6.4E-24 189.5 30.0 294 171-503 107-430 (433)
195 3i4j_A Aminotransferase, class 99.9 5.9E-20 2E-24 192.9 25.4 304 171-502 72-428 (430)
196 2oat_A Ornithine aminotransfer 99.9 1.4E-19 4.7E-24 190.9 27.1 290 173-501 120-438 (439)
197 4eu1_A Mitochondrial aspartate 99.8 6.7E-20 2.3E-24 191.2 23.5 304 160-499 72-408 (409)
198 3tfu_A Adenosylmethionine-8-am 99.8 1.2E-19 4.3E-24 192.1 25.6 304 172-504 119-455 (457)
199 2eo5_A 419AA long hypothetical 99.8 2E-19 6.9E-24 188.4 26.8 287 172-502 87-418 (419)
200 3gju_A Putative aminotransfera 99.8 2.3E-19 8E-24 190.2 27.0 309 171-504 95-458 (460)
201 1sff_A 4-aminobutyrate aminotr 99.8 2.7E-19 9.4E-24 187.3 26.8 295 173-503 86-425 (426)
202 2oqx_A Tryptophanase; lyase, p 99.8 5.6E-20 1.9E-24 195.1 21.6 316 162-504 69-444 (467)
203 3jzl_A Putative cystathionine 99.8 3.3E-20 1.1E-24 193.0 19.3 248 175-464 63-339 (409)
204 3n5m_A Adenosylmethionine-8-am 99.8 4.3E-19 1.5E-23 187.7 28.0 305 170-501 90-451 (452)
205 3hmu_A Aminotransferase, class 99.8 1.6E-19 5.4E-24 192.1 24.6 301 171-503 99-453 (472)
206 3dod_A Adenosylmethionine-8-am 99.8 2.8E-19 9.5E-24 189.0 26.2 308 171-505 87-446 (448)
207 3dxv_A Alpha-amino-epsilon-cap 99.8 8.5E-20 2.9E-24 192.3 21.5 299 170-504 85-427 (439)
208 3a8u_X Omega-amino acid--pyruv 99.8 2.5E-19 8.7E-24 189.2 24.4 305 171-502 93-447 (449)
209 3i5t_A Aminotransferase; pyrid 99.8 9.6E-19 3.3E-23 186.3 28.8 309 170-505 96-457 (476)
210 3i16_A Aluminum resistance pro 99.8 9.6E-20 3.3E-24 190.3 20.3 248 175-464 77-356 (427)
211 4a6r_A Omega transaminase; tra 99.8 3.6E-19 1.2E-23 188.7 24.1 304 170-504 93-451 (459)
212 3k7y_A Aspartate aminotransfer 99.8 9.5E-19 3.2E-23 182.2 25.4 320 145-501 49-404 (405)
213 2cjg_A L-lysine-epsilon aminot 99.8 1E-18 3.6E-23 184.6 24.8 300 171-502 101-448 (449)
214 3bwn_A AT1G70560, L-tryptophan 99.8 6.8E-19 2.3E-23 182.7 20.4 288 161-501 57-386 (391)
215 3hvy_A Cystathionine beta-lyas 99.8 6.2E-19 2.1E-23 184.2 19.5 247 175-464 78-356 (427)
216 3ht4_A Aluminum resistance pro 99.8 4E-19 1.4E-23 186.4 17.6 254 173-464 67-345 (431)
217 4ffc_A 4-aminobutyrate aminotr 99.8 2.5E-18 8.6E-23 181.9 23.0 298 171-504 107-451 (453)
218 2zy4_A L-aspartate beta-decarb 99.8 2.7E-18 9.2E-23 185.5 22.5 319 163-504 134-524 (546)
219 1zod_A DGD, 2,2-dialkylglycine 99.8 2.5E-18 8.6E-23 180.6 21.1 299 171-502 85-432 (433)
220 3oks_A 4-aminobutyrate transam 99.8 1.1E-17 3.8E-22 176.9 24.7 294 171-500 104-449 (451)
221 3l44_A Glutamate-1-semialdehyd 99.8 7.5E-18 2.6E-22 177.1 21.8 292 172-504 96-432 (434)
222 3fq8_A Glutamate-1-semialdehyd 99.8 1.7E-17 5.8E-22 174.0 23.3 290 171-501 92-426 (427)
223 2hox_A ALLIIN lyase 1; cystein 99.8 3.1E-18 1.1E-22 179.8 16.5 302 145-500 71-423 (427)
224 1ohv_A 4-aminobutyrate aminotr 99.8 3.8E-17 1.3E-21 173.7 24.8 296 170-502 109-471 (472)
225 2epj_A Glutamate-1-semialdehyd 99.8 1.3E-17 4.4E-22 175.4 20.7 287 171-503 96-432 (434)
226 2cy8_A D-phgat, D-phenylglycin 99.8 2.7E-17 9.2E-22 173.9 22.5 295 169-505 95-438 (453)
227 4e77_A Glutamate-1-semialdehyd 99.8 5E-17 1.7E-21 170.6 23.1 289 171-501 93-428 (429)
228 4h51_A Aspartate aminotransfer 99.8 2.6E-17 8.8E-22 171.6 20.5 324 146-504 65-419 (420)
229 3k28_A Glutamate-1-semialdehyd 99.7 2.3E-17 7.7E-22 173.2 18.6 284 173-502 95-427 (429)
230 3ou5_A Serine hydroxymethyltra 99.7 2E-15 6.9E-20 154.1 27.6 303 167-500 96-439 (490)
231 2e7u_A Glutamate-1-semialdehyd 99.7 2.1E-16 7.3E-21 165.5 18.4 283 170-498 91-423 (424)
232 4e3q_A Pyruvate transaminase; 99.6 1.6E-14 5.6E-19 152.5 19.4 306 173-504 113-470 (473)
233 4atq_A 4-aminobutyrate transam 99.6 8.7E-13 3E-17 138.7 30.2 294 173-501 109-454 (456)
234 4ao9_A Beta-phenylalanine amin 99.6 1.6E-13 5.5E-18 143.8 21.4 284 172-504 128-448 (454)
235 2yky_A Beta-transaminase; tran 99.3 3E-16 1E-20 165.5 0.0 291 170-503 139-461 (465)
236 4a0g_A Adenosylmethionine-8-am 99.5 1.7E-12 5.9E-17 146.0 20.3 301 175-502 428-828 (831)
237 4gqr_A Pancreatic alpha-amylas 45.0 10 0.00035 38.9 2.8 33 282-314 69-101 (496)
238 3kts_A Glycerol uptake operon 40.2 18 0.00061 32.4 3.1 47 262-313 18-66 (192)
239 3vc3_A Beta-cyanoalnine syntha 40.1 44 0.0015 32.7 6.4 52 198-256 91-142 (344)
240 1g94_A Alpha-amylase; beta-alp 38.0 14 0.00049 37.7 2.5 33 281-313 56-88 (448)
241 3ff4_A Uncharacterized protein 37.6 34 0.0011 28.0 4.3 43 263-313 72-114 (122)
242 3dwg_A Cysteine synthase B; su 37.5 51 0.0017 31.9 6.3 52 198-256 77-128 (325)
243 3ezx_A MMCP 1, monomethylamine 36.6 1.5E+02 0.0052 26.6 9.0 129 171-311 41-185 (215)
244 3bh4_A Alpha-amylase; calcium, 34.8 19 0.00067 37.1 2.9 32 282-313 71-102 (483)
245 2gjh_A Designed protein; oblig 34.4 76 0.0026 21.1 4.6 31 475-505 3-33 (62)
246 1tks_A 3,4-dihydroxy-2-butanon 34.3 50 0.0017 29.7 5.1 38 271-308 157-194 (204)
247 1ud2_A Amylase, alpha-amylase; 34.1 20 0.0007 36.9 2.9 32 282-313 73-104 (480)
248 3gi1_A LBP, laminin-binding pr 34.0 3E+02 0.01 25.8 12.5 72 227-308 180-256 (286)
249 1mxg_A Alpha amylase; hyperthe 33.6 21 0.00073 36.3 2.9 32 282-313 79-110 (435)
250 1wpc_A Glucan 1,4-alpha-maltoh 33.5 21 0.00073 36.8 2.9 32 282-313 75-106 (485)
251 2pqm_A Cysteine synthase; OASS 33.4 41 0.0014 32.9 4.9 52 198-256 82-133 (343)
252 1lwj_A 4-alpha-glucanotransfer 33.3 18 0.00062 36.8 2.3 31 283-313 63-93 (441)
253 1y80_A Predicted cobalamin bin 33.0 1.6E+02 0.0055 26.1 8.6 68 239-312 108-180 (210)
254 1hvx_A Alpha-amylase; hydrolas 32.9 22 0.00075 37.1 2.9 32 282-313 74-105 (515)
255 2o1e_A YCDH; alpha-beta protei 32.7 3.3E+02 0.011 25.9 11.7 71 227-307 191-266 (312)
256 2q3b_A Cysteine synthase A; py 32.2 39 0.0013 32.5 4.5 52 198-256 71-122 (313)
257 1vp8_A Hypothetical protein AF 32.2 2.7E+02 0.0092 24.7 9.6 100 198-300 19-133 (201)
258 1gcy_A Glucan 1,4-alpha-maltot 32.0 23 0.0008 37.0 3.0 30 284-313 87-116 (527)
259 2guy_A Alpha-amylase A; (beta- 31.7 20 0.00068 36.9 2.4 32 282-313 90-121 (478)
260 4aie_A Glucan 1,6-alpha-glucos 31.0 23 0.00078 37.0 2.7 32 283-314 73-104 (549)
261 4fgs_A Probable dehydrogenase 30.4 97 0.0033 29.2 6.8 84 198-291 32-121 (273)
262 1ht6_A AMY1, alpha-amylase iso 30.2 22 0.00075 35.7 2.3 30 284-313 63-92 (405)
263 3dhu_A Alpha-amylase; structur 30.1 23 0.00078 36.1 2.4 32 282-313 76-107 (449)
264 2dh2_A 4F2 cell-surface antige 29.5 21 0.00073 36.2 2.1 32 282-313 74-105 (424)
265 4aec_A Cysteine synthase, mito 29.3 51 0.0017 33.5 4.8 52 198-256 179-230 (430)
266 1y7l_A O-acetylserine sulfhydr 29.2 46 0.0016 32.0 4.4 52 198-256 66-117 (316)
267 1wza_A Alpha-amylase A; hydrol 28.8 22 0.00075 36.7 2.1 32 283-314 75-106 (488)
268 3rjz_A N-type ATP pyrophosphat 28.5 3.4E+02 0.012 24.8 11.5 94 198-307 9-120 (237)
269 2v03_A Cysteine synthase B; py 28.3 79 0.0027 30.1 5.9 52 198-256 65-116 (303)
270 2aaa_A Alpha-amylase; glycosid 27.9 23 0.00078 36.5 2.0 32 282-313 90-121 (484)
271 1jae_A Alpha-amylase; glycosid 27.8 21 0.00072 36.7 1.7 32 282-313 67-98 (471)
272 2z1k_A (NEO)pullulanase; hydro 27.7 22 0.00074 36.6 1.8 33 282-314 89-121 (475)
273 3cx3_A Lipoprotein; zinc-bindi 27.4 3.1E+02 0.011 25.6 9.9 71 227-307 178-253 (284)
274 3hh8_A Metal ABC transporter s 27.4 3.9E+02 0.013 25.1 11.2 66 235-307 189-259 (294)
275 2ioj_A Hypothetical protein AF 27.3 2.5E+02 0.0087 22.9 9.0 39 264-308 64-103 (139)
276 1is1_A Ribosome recycling fact 27.2 1.8E+02 0.0061 25.6 7.4 49 452-500 74-122 (185)
277 3mfq_A TROA, high-affinity zin 27.1 60 0.0021 30.7 4.7 75 228-308 164-243 (282)
278 1j0h_A Neopullulanase; beta-al 27.0 26 0.0009 37.2 2.3 33 283-315 216-248 (588)
279 1ise_A Ribosome recycling fact 26.9 1.8E+02 0.0062 25.6 7.4 49 452-500 74-122 (185)
280 4h27_A L-serine dehydratase/L- 26.7 2.3E+02 0.0077 27.7 9.1 51 198-255 97-147 (364)
281 3tbh_A O-acetyl serine sulfhyd 26.5 53 0.0018 32.0 4.3 52 198-256 76-127 (334)
282 1zja_A Trehalulose synthase; s 26.4 28 0.00094 36.7 2.3 33 283-315 73-105 (557)
283 1wqg_A Ribosome recycling fact 26.4 1.8E+02 0.0061 25.6 7.3 49 452-500 74-122 (185)
284 1v77_A PH1877P, hypothetical p 26.4 39 0.0013 30.6 3.1 73 237-310 87-167 (212)
285 1j0a_A 1-aminocyclopropane-1-c 26.0 1.4E+02 0.0047 28.7 7.2 52 198-256 73-128 (325)
286 1ea9_C Cyclomaltodextrinase; h 25.9 29 0.001 36.8 2.4 34 282-315 211-244 (583)
287 2wc7_A Alpha amylase, catalyti 25.2 23 0.0008 36.5 1.5 31 283-313 96-126 (488)
288 1iuk_A Hypothetical protein TT 24.9 44 0.0015 27.9 3.0 41 266-313 87-127 (140)
289 1wzl_A Alpha-amylase II; pullu 24.9 28 0.00095 37.0 2.0 34 282-315 212-245 (585)
290 2egu_A Cysteine synthase; O-ac 24.6 42 0.0014 32.2 3.1 52 198-256 69-120 (308)
291 1m53_A Isomaltulose synthase; 24.4 27 0.00092 36.9 1.8 32 283-314 86-117 (570)
292 1dd5_A Ribosome recycling fact 24.3 1.8E+02 0.0061 25.6 6.8 49 452-500 74-122 (185)
293 1d3c_A Cyclodextrin glycosyltr 24.3 34 0.0012 37.0 2.7 31 283-313 109-139 (686)
294 3bc9_A AMYB, alpha amylase, ca 24.1 37 0.0013 36.2 2.8 31 283-313 202-232 (599)
295 1qho_A Alpha-amylase; glycosid 24.1 35 0.0012 37.0 2.7 31 283-313 101-131 (686)
296 3uug_A Multiple sugar-binding 23.9 1.9E+02 0.0065 27.1 7.8 65 239-308 25-89 (330)
297 3ghf_A Septum site-determining 23.7 1.9E+02 0.0066 23.3 6.6 56 247-311 16-83 (120)
298 1f2d_A 1-aminocyclopropane-1-c 23.6 2.1E+02 0.0072 27.5 8.1 52 198-256 70-135 (341)
299 3l6u_A ABC-type sugar transpor 23.6 2.2E+02 0.0074 26.1 8.0 65 239-308 30-94 (293)
300 3tb6_A Arabinose metabolism tr 23.5 2.3E+02 0.008 25.8 8.3 80 229-310 20-107 (298)
301 1ua7_A Alpha-amylase; beta-alp 23.5 24 0.00082 35.7 1.2 29 285-313 70-98 (422)
302 3edf_A FSPCMD, cyclomaltodextr 23.3 34 0.0012 36.4 2.3 31 283-313 192-222 (601)
303 1cyg_A Cyclodextrin glucanotra 23.1 34 0.0012 37.0 2.3 31 283-313 105-135 (680)
304 1g5a_A Amylosucrase; glycosylt 23.1 39 0.0013 36.2 2.7 32 282-313 155-186 (628)
305 1uok_A Oligo-1,6-glucosidase; 23.1 30 0.001 36.5 1.8 31 284-314 73-103 (558)
306 3bmv_A Cyclomaltodextrin gluca 22.9 38 0.0013 36.7 2.7 31 283-313 110-140 (683)
307 2bhu_A Maltooligosyltrehalose 22.3 31 0.0011 36.8 1.8 33 282-314 185-217 (602)
308 2e8y_A AMYX protein, pullulana 22.3 25 0.00085 38.4 1.0 29 286-314 312-340 (718)
309 2d59_A Hypothetical protein PH 22.3 92 0.0031 26.0 4.5 44 263-313 91-134 (144)
310 3aj7_A Oligo-1,6-glucosidase; 22.3 37 0.0013 36.1 2.3 32 284-315 82-113 (589)
311 4aef_A Neopullulanase (alpha-a 22.3 31 0.0011 37.1 1.8 33 282-314 278-310 (645)
312 2zic_A Dextran glucosidase; TI 21.9 30 0.001 36.4 1.5 30 284-313 73-102 (543)
313 3vgf_A Malto-oligosyltrehalose 21.1 31 0.0011 36.3 1.5 33 281-313 159-191 (558)
314 2ze0_A Alpha-glucosidase; TIM 21.0 31 0.0011 36.3 1.4 32 283-314 72-103 (555)
315 1m7x_A 1,4-alpha-glucan branch 21.0 34 0.0012 36.5 1.8 33 282-314 197-229 (617)
316 3zss_A Putative glucanohydrola 21.0 49 0.0017 35.9 3.0 33 281-313 312-344 (695)
317 3m07_A Putative alpha amylase; 20.9 41 0.0014 36.0 2.3 34 281-314 194-227 (618)
318 3czg_A Sucrose hydrolase; (alp 20.9 39 0.0013 36.3 2.2 32 283-314 149-180 (644)
319 1z7w_A Cysteine synthase; tran 20.7 97 0.0033 29.7 4.9 52 198-256 71-122 (322)
320 1x92_A APC5045, phosphoheptose 20.6 4.1E+02 0.014 22.8 9.6 41 263-307 104-144 (199)
321 3pc3_A CG1753, isoform A; CBS, 20.5 1.7E+02 0.0059 30.2 7.1 53 198-257 117-169 (527)
322 3m9w_A D-xylose-binding peripl 20.4 2.6E+02 0.0089 25.9 8.0 65 239-308 24-88 (313)
323 2ya0_A Putative alkaline amylo 20.4 40 0.0014 36.7 2.2 32 284-315 249-280 (714)
324 3grp_A 3-oxoacyl-(acyl carrier 20.4 2.9E+02 0.0098 25.3 8.1 83 198-290 30-118 (266)
325 3ecs_A Translation initiation 20.3 3.3E+02 0.011 26.1 8.4 100 198-311 125-231 (315)
No 1
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-59 Score=502.94 Aligned_cols=465 Identities=42% Similarity=0.767 Sum_probs=377.8
Q ss_pred cCcchhHHHHHHHhhhhcccCCCcccc--ccCCCCCCCCCCCc-HHHHHHHHHHhC--CCCCCC-CCceeeeecCCCCcc
Q 009181 69 LVPGVNKYIEAEKQKVVDKMQSGVKSK--REGWWTELPRAGLG-VGVIEKLKEEKG--KDVVWQ-GKCSGTVYIGGSEAE 142 (541)
Q Consensus 69 ~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lP~~g~~-~~i~~~l~~~~~--~~~~~~-~~~~g~~y~~~~~~~ 142 (541)
.+|+++++++++++++..++..++.+. +.....++|++|.+ +++++.++++.. +...|. |+++|++|+++..
T Consensus 2 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 79 (497)
T 3mc6_A 2 GSPFLRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDD-- 79 (497)
T ss_dssp -----------------------------CCCCCSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHH--
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchH--
Confidence 589999999999999998888777653 33677899999999 999999999843 577787 9999998888755
Q ss_pred cHHHHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCC-CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhh
Q 009181 143 GHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK 221 (541)
Q Consensus 143 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~-~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~ 221 (541)
..+.+.+++..+.+.|+++|+.+|+..++|.++++|+++++|++ ... .+++|+|||+|+.+++++++++..++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~-----~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 80 -LIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTG-----CGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp -HHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTC-----CEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCC-----eEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 78888899999888899999999999999999999999999998 333 44999999999999999999877767
Q ss_pred cCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHH
Q 009181 222 RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL 300 (541)
Q Consensus 222 ~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~ 300 (541)
+|+.+++|+++.++|+++.++++.+|++++.||+++ ++.+|+++|+++|+++|++|++++|+||+|.++|+++|+++|+
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~ 233 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQ 233 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHH
T ss_pred CCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHH
Confidence 788889999999999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCC-CCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCc
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL 379 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~-~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~ 379 (541)
+||+|+|||+||++++.+|+...|+. +|++++...|+|++++++||++++|.|+|+++++++.+....+...+.|.++.
T Consensus 234 ~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 313 (497)
T 3mc6_A 234 KYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL 313 (497)
T ss_dssp HTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSC
T ss_pred HhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCC
Confidence 99999999999999999988766653 55788889999999999999999999999999988877776666778888887
Q ss_pred cCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecCCCCHHHHHH
Q 009181 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSDVVDIFEVND 458 (541)
Q Consensus 380 ~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~~~~~~~l~~ 458 (541)
+.++...|+|++..++++|++++.++.+++++..++..++++++++.|++ +|+++++.++..++++|...+.+..++.+
T Consensus 314 ~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 393 (497)
T 3mc6_A 314 YGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHELSD 393 (497)
T ss_dssp BCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTTTHHHHHH
T ss_pred cCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCCCHHHHHH
Confidence 78888999999999999999999999999999999999999999999999 79999998888999999987778999999
Q ss_pred HHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCCCC--CCCcchhhhhcCCCCChhHHHHHHHHH
Q 009181 459 IMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQNPGPA--NGSLAPIYGAAGRMPDRGMVNELLVNY 536 (541)
Q Consensus 459 ~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~~~~~~--~~~~~~~yg~~~~~~~~~~~~~~~~~~ 536 (541)
.|.++|+.+...+.+..+|++++..+.+++++++++|+++++++.+++... .++.+++||+++++|++++|++++..|
T Consensus 394 ~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 473 (497)
T 3mc6_A 394 RLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELKSESNSKPSPDGTSALYGVAGSVKTAGVADKLIVGF 473 (497)
T ss_dssp HHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC-----------------------CCTHHHHHHH
T ss_pred HHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCcCcCCCCCCCCccccccccCCChHHHHHHHHHH
Confidence 999999988877777889999994444999999999999999999887665 678899999999999999999999999
Q ss_pred HHhcC
Q 009181 537 MDSTC 541 (541)
Q Consensus 537 ~~~~~ 541 (541)
+|++.
T Consensus 474 ~~~~~ 478 (497)
T 3mc6_A 474 LDALY 478 (497)
T ss_dssp HHTTC
T ss_pred HHHHc
Confidence 99874
No 2
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=1.7e-56 Score=483.13 Aligned_cols=433 Identities=49% Similarity=0.932 Sum_probs=390.8
Q ss_pred CCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcccHHHHHHHHHHhhcccCCCCcccchHHHHHHH
Q 009181 98 GWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEA 174 (541)
Q Consensus 98 ~~~~~lP~~g~~-~~i~~~l~~~-~~~~~~~~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ 174 (541)
.....+|++|.+ +++++.++++ .++...|. ++++|+++++... +.+.+.+++..+.+.|++++..+|+..++|.
T Consensus 66 ~~~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~ 142 (514)
T 3mad_A 66 PSHARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEH---HIAFLNEVYALQSQSNPLHPDLWPSTAKFEA 142 (514)
T ss_dssp CCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHH---HHHHHHHHHHHHTTCCTTCTTTCHHHHHHHH
T ss_pred CccCCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCC---HHHHHHHHHHHHhhcCCcccccChHHHHHHH
Confidence 345779999999 9999999988 45667777 8889988877666 7788889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCC--CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEE
Q 009181 175 EVIAMTAALLGNKE--KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (541)
Q Consensus 175 ev~~~la~l~g~~~--~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~ 252 (541)
++++|+++++|++. ++ ++|++|+|||+|+.++++++++...+++|+.+++|+++.++|+++.++++.+|++++.
T Consensus 143 ~l~~~la~~~g~~~~~~~----v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~ 218 (514)
T 3mad_A 143 EVVAMTAHMLGGDAAGGT----VCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVR 218 (514)
T ss_dssp HHHHHHHHHTTGGGGTSC----CEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCCCccCC----cceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEE
Confidence 99999999999984 22 5779999999999999999998766656777799999999999999999999999999
Q ss_pred eeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc
Q 009181 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (541)
Q Consensus 253 v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~ 332 (541)
||+++++.+|+++|+++|++++++|++++|+||+|.++|+++|.++|++||+|||+|+||+++++|+.+..|.+.+++++
T Consensus 219 v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~ 298 (514)
T 3mad_A 219 TPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDF 298 (514)
T ss_dssp ECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCST
T ss_pred eeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888876678888
Q ss_pred CCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHH
Q 009181 333 SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLEN 412 (541)
Q Consensus 333 ~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~ 412 (541)
...|+|++++++||++++|.++|+++++++..+...+....+|.++.+..+...|++++..++++|++++.++.++++++
T Consensus 299 ~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~ 378 (514)
T 3mad_A 299 RLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDA 378 (514)
T ss_dssp TSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999887777777777888887778888999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH--HHHHH
Q 009181 413 TKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV--AVVDV 490 (541)
Q Consensus 413 ~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~--e~id~ 490 (541)
.+++.++++++.+.|+++++++++.++ .++++|...+.+..++.+.|.++|+.+...+.++.+|++++..++ +++++
T Consensus 379 ~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~ 457 (514)
T 3mad_A 379 TRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDR 457 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCEESSCC-SSEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEeCCC-eEEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHH
Confidence 999999999999999999999988766 458888876678899999999999988777778899999985543 89999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCcchhhhhcCCCCChhHHHHHHHHHHHhc
Q 009181 491 FLRDLRESVETVKQNPGPANGSLAPIYGAAGRMPDRGMVNELLVNYMDST 540 (541)
Q Consensus 491 ~i~~L~~~~~~l~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~ 540 (541)
++++|+++++++.+++... ++++++||++++||| ++|+++++.|+|+|
T Consensus 458 ~l~~L~~~l~~~~~~~~~~-~~~~~~yg~~~~~~~-~~~~~~~~~~~~~~ 505 (514)
T 3mad_A 458 FLADLQDAVAQVRAHPEKA-TGMAPVYGMAAAAPP-ELVRQVLTGFIDLL 505 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCC-CTTHHHHHHHHHSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-CCceehhhhcccCCH-HHHHHHHHHHHHHH
Confidence 9999999999999887665 889999999999999 99999999999987
No 3
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-49 Score=420.61 Aligned_cols=407 Identities=18% Similarity=0.172 Sum_probs=331.0
Q ss_pred hhhhcccCCCccccccCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcccHHHHHHHHHHhhccc
Q 009181 82 QKVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHT 158 (541)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~l~~~-~~~~~~~~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 158 (541)
.++.+...++.+ +...+.++|++|.+ +++++++.+. .++..+|+ |+++++++.+.. .+..+.+++...++.
T Consensus 32 ~~v~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~n~ 105 (481)
T 4e1o_A 32 RRVTPDVQPGYL--RAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTS----WPSLLGDMLADAINC 105 (481)
T ss_dssp SCSSCCCCTTTT--GGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCC----HHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHH--HHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCC----HHHHHHHHHHHHhCc
Confidence 467777788777 45677789999999 9999999997 67888898 888887755444 578889999999999
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHhCCCCCC----CCCccceEEcCcHHHHHHHHHHHHHHHHHhh---cC--C-----
Q 009181 159 NPLHLDIFQSVARFEAEVIAMTAALLGNKEKA----SGGQVCGNMTSGGTESILLAVKSSRDYMRNK---RG--I----- 224 (541)
Q Consensus 159 n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~----~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~---~G--i----- 224 (541)
|..+|+.+|++.++|.++.+|+++++|.+... +.+...|++|+|||+|+++|+.++|++...+ .| +
T Consensus 106 ~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~ 185 (481)
T 4e1o_A 106 LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL 185 (481)
T ss_dssp CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccc
Confidence 99999999999999999999999999998541 0111267999999999999999999864321 11 1
Q ss_pred -CCCeEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccC------ceEEEeecCCCCCccccCHHHHHH
Q 009181 225 -TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGE 297 (541)
Q Consensus 225 -~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~------t~~vv~~~~~~~~G~id~i~~I~~ 297 (541)
.+++|++++.+|+++.+++++.|++++.||+++++++|+++|+++|+++ |++|++++++|++|.++|+++|++
T Consensus 186 ~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~ 265 (481)
T 4e1o_A 186 NARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265 (481)
T ss_dssp HTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred cCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHH
Confidence 2368999999999999999999999999999999999999999999865 789999999999999999999999
Q ss_pred HHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCc---eEEEeCCCCCCCCCCCceEEEEecccccccccccccc
Q 009181 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV---TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374 (541)
Q Consensus 298 la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gv---dsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~ 374 (541)
+|++||+|+|||+|||++++. .|.++....|+ ||+++++|||+++|.|+|+++++++......+.....
T Consensus 266 la~~~~~~lhvDaA~g~~~~~--------~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~ 337 (481)
T 4e1o_A 266 ICAREGLWLHIDAAYAGTAFL--------CPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPI 337 (481)
T ss_dssp HHHHHTCEEEEECTTGGGGGG--------SGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCG
T ss_pred HHHHcCCeEEeehhhHHHHHh--------ChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCch
Confidence 999999999999999988653 22333344454 9999999999999999999999988765433322233
Q ss_pred cCCC-------ccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEe
Q 009181 375 WSGG-------LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFG 447 (541)
Q Consensus 375 ~~~~-------~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~ 447 (541)
|... .+...++.++|.. ..+++|++++.+|.+|+++++++..++++++++.|+++|+++++.++..++++|+
T Consensus 338 yl~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~ 416 (481)
T 4e1o_A 338 YLRHANSGVATDFMHWQIPLSRRF-RSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFR 416 (481)
T ss_dssp GGCCTTTTTSCCGGGGSSSSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEE
T ss_pred hccCcccCCCCCcccccccCCCCc-cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE
Confidence 3211 1223345555543 2459999999999999999999999999999999999999999988899999999
Q ss_pred cCCC--CHHHHHHHHHhCCceecc---CCCCCeEEEEecCCC-H-HHHHHHHHHHHHHHHHHH
Q 009181 448 SDVV--DIFEVNDIMSSKGWHLNP---LQRPNSIHICVTLQH-V-AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 448 ~~~~--~~~~l~~~l~~~G~~~~~---~~~~~~iRi~~~~~~-~-e~id~~i~~L~~~~~~l~ 503 (541)
+.+. ...++.++|.++|+.... ......+|+|++..+ + +|++++++.|+++.+++.
T Consensus 417 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 417 LKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp ESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8654 356888999999954322 223358999987654 3 999999999999998765
No 4
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=100.00 E-value=6.9e-49 Score=419.05 Aligned_cols=407 Identities=14% Similarity=0.131 Sum_probs=323.9
Q ss_pred hhhhcccCCCccccccCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcccHHHHHHHHHHhhccc
Q 009181 82 QKVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHT 158 (541)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~l~~~-~~~~~~~~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 158 (541)
.++.+...++.+ +..++.++|++|.+ +++++++.+. .++..+|+ |+++|+++.+.. .+..+.+++...++.
T Consensus 27 ~~v~~~~~p~~l--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~l~~~~n~ 100 (475)
T 3k40_A 27 RRVLPEVKPGYL--KPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANS----YPAIVADMLSGAIAC 100 (475)
T ss_dssp SCSSCSSCTTCS--GGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCC----HHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHH--HHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCc----HHHHHHHHHHHHhCc
Confidence 467777788777 56677899999999 9999999987 67888898 899988755444 578889999999999
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHhCCCCCC---CCCccceEEcCcHHHHHHHHHHHHHHHHHhh-----cCC------
Q 009181 159 NPLHLDIFQSVARFEAEVIAMTAALLGNKEKA---SGGQVCGNMTSGGTESILLAVKSSRDYMRNK-----RGI------ 224 (541)
Q Consensus 159 n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~---~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~-----~Gi------ 224 (541)
|..+|..+|+..++|+++.+|+++++|.+... +++...|++|+|||+||++|+.++|++...+ +++
T Consensus 101 ~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~ 180 (475)
T 3k40_A 101 IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180 (475)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 99999999999999999999999999998531 0011257999999999999999998765321 111
Q ss_pred CCCeEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccC------ceEEEeecCCCCCccccCHHHHHHH
Q 009181 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGEL 298 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~------t~~vv~~~~~~~~G~id~i~~I~~l 298 (541)
.+++|+++..+|+|+.+++++.|++++.||+++++ +|+++|+++|+++ |++|++++++|++|.++|+++|+++
T Consensus 181 ~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~l 259 (475)
T 3k40_A 181 GKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPV 259 (475)
T ss_dssp HHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred CCeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHH
Confidence 12579999999999999999999999999999899 9999999999865 7889999999999999999999999
Q ss_pred HHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC---ceEEEeCCCCCCCCCCCceEEEEeccccccccccccccc
Q 009181 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG---VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW 375 (541)
Q Consensus 299 a~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g---vdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~ 375 (541)
|++||+|+|||+|||++++. .|.++....| +|++++++|||+++|.|+|+++++++......+.....|
T Consensus 260 a~~~~~~lhvD~A~~~~~~~--------~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~y 331 (475)
T 3k40_A 260 GNKHNLWIHVDAAYAGSAFI--------CPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 331 (475)
T ss_dssp HHHTTCEEEEECTTGGGGGG--------SGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC----------
T ss_pred HHHhCCeEEEeHHhHHHHHh--------CHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccc
Confidence 99999999999999987652 1223333334 599999999999999999999999887654322222222
Q ss_pred CCC-------ccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEec
Q 009181 376 SGG-------LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGS 448 (541)
Q Consensus 376 ~~~-------~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~ 448 (541)
... .+...++.++|.. ..+++|++++.+|.+|+++++++..++++++++.|+++|+++++.++..++++|++
T Consensus 332 l~~~~~~~~~~~~~~~~~~sr~~-~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~ 410 (475)
T 3k40_A 332 LKHDMQGSAPDYRHWQIPLGRRF-RALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRL 410 (475)
T ss_dssp -----------------CCCGGG-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEE
T ss_pred cCCCcCCCCCCcccccccCCCcc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEe
Confidence 111 1223344555543 34599999999999999999999999999999999999999999988999999998
Q ss_pred CCC--CHHHHHHHHHhCCceecc---CCCCCeEEEEecCCC-H-HHHHHHHHHHHHHHHHHHc
Q 009181 449 DVV--DIFEVNDIMSSKGWHLNP---LQRPNSIHICVTLQH-V-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 449 ~~~--~~~~l~~~l~~~G~~~~~---~~~~~~iRi~~~~~~-~-e~id~~i~~L~~~~~~l~~ 504 (541)
.+. ...++.++|.++|+.... ......+|+|++..+ + +|++++++.|+++.+++.+
T Consensus 411 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 411 KGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp SSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 653 356888999999865422 122368999987543 3 9999999999999988764
No 5
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=8.6e-47 Score=400.89 Aligned_cols=397 Identities=20% Similarity=0.317 Sum_probs=323.6
Q ss_pred cCCCCCCCCCCCc-HHHHHHHHHHh--CCCCCCC-CCceeeeecCCCCcccHHHHHHHHHHhhcccCCCCcccchHHHHH
Q 009181 97 EGWWTELPRAGLG-VGVIEKLKEEK--GKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARF 172 (541)
Q Consensus 97 ~~~~~~lP~~g~~-~~i~~~l~~~~--~~~~~~~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 172 (541)
.....++|++|.+ +++++++.++. ++...|+ +.+.+ .| . ...+.+++...++.|+.++..+|+..++
T Consensus 12 ~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~-~~----~----~~~v~e~~~~a~~~~~~~~~~~~~~~~l 82 (452)
T 2dgk_A 12 IAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ-TW----D----DENVHKLMDLSINKNWIDKEEYPQSAAI 82 (452)
T ss_dssp ---CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC-CC----C----CHHHHHHHHHTTTCBTTCTTTCHHHHHH
T ss_pred hccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC-CC----c----hHHHHHHHHHHhccCCCChhhChhHHHH
Confidence 3456789999999 99999999984 5666665 55443 11 1 1346778888888888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHh---hcCC--CCCeEEecCCccchHHHHHhhcC
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRGI--TRPEMIIPVSAHSAYDKAAQYFN 247 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~---~~Gi--~~~~vi~~~~~h~s~~ka~~~~G 247 (541)
|.++++|+++++|++.++- ++..|++|+|||+|+.++++++++.... ++|. .+++|++++ .|+++.++++++|
T Consensus 83 ~~~~~~~la~l~g~~~~~~-~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G 160 (452)
T 2dgk_A 83 DLRCVNMVADLWHAPAPKN-GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD 160 (452)
T ss_dssp HHHHHHHHHHHTTCCCCTT-SCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccc-cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC
Confidence 9999999999999985410 0013599999999999999998763321 2443 246999999 9999999999999
Q ss_pred CeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHc------CCEEEEeCCcccchhhhh
Q 009181 248 IKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH------GTCLHVDLCLGGFVLPFA 320 (541)
Q Consensus 248 ~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~------~i~lhvD~a~gg~~~~f~ 320 (541)
++++.||+++ ++.+|+++|+++|+++|++|++++|+|++|.++|+++|+++|++| |+|+|||+||++++.||.
T Consensus 161 ~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~ 240 (452)
T 2dgk_A 161 VELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240 (452)
T ss_dssp CEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred ceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhh
Confidence 9999999987 799999999999999999999999999999999999999999996 999999999999988764
Q ss_pred hhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHH
Q 009181 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA 400 (541)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~a 400 (541)
.... ++++...++|++++++|||+++|.++|+++++++......+...+.|.++.....+..++|++...+++|++
T Consensus 241 ~~~~----~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aa 316 (452)
T 2dgk_A 241 APDI----VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYE 316 (452)
T ss_dssp CTTC----CCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHH
T ss_pred Cccc----hhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHH
Confidence 3211 345567799999999999999999999999988765433333445666655445567888988778899999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC----CCeeEEEEecCCC-----CHHHHHHHHHhCCceeccCC
Q 009181 401 LMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR----PDMTIVAFGSDVV-----DIFEVNDIMSSKGWHLNPLQ 471 (541)
Q Consensus 401 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~----~~~~~v~f~~~~~-----~~~~l~~~l~~~G~~~~~~~ 471 (541)
++.+|.++++++.++..++++++.+.|+++++++++.+ +..++++|++.+. +..++.+.|.++|+.+..+.
T Consensus 317 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~ 396 (452)
T 2dgk_A 317 FLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFT 396 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEE
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeee
Confidence 99999999999999999999999999999988999865 5678999998642 45899999999998644321
Q ss_pred ------CCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHcCCCC
Q 009181 472 ------RPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQNPGP 508 (541)
Q Consensus 472 ------~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~~~~ 508 (541)
..+.+|+|++..++ +|+|+++++|+++++++++.|..
T Consensus 397 ~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~~~~~ 440 (452)
T 2dgk_A 397 LGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHPKL 440 (452)
T ss_dssp CSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 23489999987766 99999999999999999887643
No 6
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=100.00 E-value=6.2e-47 Score=407.43 Aligned_cols=404 Identities=16% Similarity=0.175 Sum_probs=320.3
Q ss_pred hhcccCCCccccc-cCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCcccHHHHHHHHHHhhcccCC
Q 009181 84 VVDKMQSGVKSKR-EGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNP 160 (541)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~lP~~g~~-~~i~~~l~~~~~~~~~~~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~ 160 (541)
+.+...|+.++.. ...+.++|++|.+ ++++++++++.....+|+ |+++|+++.+ .. .+.++.+++...++.|.
T Consensus 49 ~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~~~-~~---~~~~~~e~l~~~~~~~~ 124 (511)
T 3vp6_A 49 VLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTG-LD---IIGLAGEWLTSTANTNM 124 (511)
T ss_dssp SCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCCTTSTTEESSSSCC-CC---HHHHHHHHHHHHHCCCS
T ss_pred CCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCceEeecCC-Cc---HHHHHHHHHHHHhccCC
Confidence 4445555555221 1267889999999 999999998865556666 8999987544 44 68899999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHH---hhcCC---CCCeEEecCC
Q 009181 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRGI---TRPEMIIPVS 234 (541)
Q Consensus 161 ~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~---~~~Gi---~~~~vi~~~~ 234 (541)
.+|..+|+..++|+++++|+++++|++... -.|++|+|||+|+..++.++++... +++|+ .+++|+++..
T Consensus 125 ~~~~~~p~~~~le~~~~~~l~~~~g~~~~~----~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~ 200 (511)
T 3vp6_A 125 FTYEIAPVFVLMEQITLKKMREIVGWSSKD----GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQ 200 (511)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTCCSSS----CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETT
T ss_pred CCcccCchHHHHHHHHHHHHHHHhCCCCCC----CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCC
Confidence 999999999999999999999999998532 1569999999999999999987531 12332 2368999999
Q ss_pred ccchHHHHHhhcCC---eEEEeeCCCCCccCHHHHHHhhccC------ceEEEeecCCCCCccccCHHHHHHHHHHcCCE
Q 009181 235 AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTC 305 (541)
Q Consensus 235 ~h~s~~ka~~~~G~---~v~~v~~~~~~~~d~~~Le~~i~~~------t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~ 305 (541)
+|+++.++++.+|+ +++.||+++++++|+++|+++|+++ |++|++++|+|++|.++|+++|+++|++||+|
T Consensus 201 ~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~ 280 (511)
T 3vp6_A 201 SHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLW 280 (511)
T ss_dssp SCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCE
T ss_pred chHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCE
Confidence 99999999999998 9999999999999999999999876 89999999999999999999999999999999
Q ss_pred EEEeCCcccchhhhhhhcCCCCCCCCcCCCC---ceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCC----
Q 009181 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG---VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---- 378 (541)
Q Consensus 306 lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g---vdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~---- 378 (541)
+|||+|||+++++ .|+++....| +||+++++|||+++|.|+|+++++++..+...+...+.|...
T Consensus 281 lhvD~a~~~~~~~--------~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~ 352 (511)
T 3vp6_A 281 LHVDAAWGGGLLM--------SRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKH 352 (511)
T ss_dssp EEEEETTGGGGGG--------CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCS
T ss_pred EEEEccchhhHhh--------ChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccc
Confidence 9999999998774 3345554444 599999999999999999999999887654433222333211
Q ss_pred -----ccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEec--CCCeeEEEEecCCC
Q 009181 379 -----LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIG--RPDMTIVAFGSDVV 451 (541)
Q Consensus 379 -----~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~f~~~~~ 451 (541)
.+...++.++|.. .++++|++++.+|.+|+++++++..++++++++.|+++|+++++. +|..++++|++.+.
T Consensus 353 ~~~~~~~~~~~~~~~r~~-~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~ 431 (511)
T 3vp6_A 353 YDVSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ 431 (511)
T ss_dssp SCGGGCCGGGSSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCG
T ss_pred cccccCccCCCCCCCCch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCc
Confidence 1122344445443 345999999999999999999999999999999999999999998 68889999986432
Q ss_pred C-----------------HHHHHHHHHhCCceeccC----CCCCeEEEEe-cCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 452 D-----------------IFEVNDIMSSKGWHLNPL----QRPNSIHICV-TLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 452 ~-----------------~~~l~~~l~~~G~~~~~~----~~~~~iRi~~-~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
. ..++.+.|.++|..+... +..+++|+++ +..++ +|++++++.|+++.+.+..
T Consensus 432 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~~ 507 (511)
T 3vp6_A 432 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLHH 507 (511)
T ss_dssp GGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC----
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 1 235788899999654332 1124799998 45455 9999999999999877654
No 7
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=3.6e-45 Score=393.03 Aligned_cols=396 Identities=20% Similarity=0.347 Sum_probs=327.8
Q ss_pred CCCCCCCCCCc-HHHHHHHHHHh--CCCCCCCCCceeeeecCCCCcccHHHHHHHHHHhhcccCCCCcccchHHHHHHHH
Q 009181 99 WWTELPRAGLG-VGVIEKLKEEK--GKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAE 175 (541)
Q Consensus 99 ~~~~lP~~g~~-~~i~~~l~~~~--~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~e 175 (541)
....+|++|.+ +++++.+++.. .++. .+..+.|..... ...+.+++...++.|..++..+|.+.++|.+
T Consensus 28 p~~~~p~~~~~~~~~~~~~~~~i~l~gnp----~~~l~s~~t~~~----~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~ 99 (502)
T 3hbx_A 28 PRFKMPENSIPKEAAYQIINDELMLDGNP----RLNLASFVTTWM----EPECDKLIMSSINKNYVDMDEYPVTTELQNR 99 (502)
T ss_dssp CSSSCCSSCCCHHHHHHHHHHHGGGSCCG----GGBTTCCSCCCC----CHHHHHHHHHTTTCBTTCTTTCHHHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhccCCCC----CceeccccCCCC----CHHHHHHHHHHhccCCCChhcChhHHHHHHH
Confidence 34589999999 99999998763 3332 221111221221 2456777777788888888899999999999
Q ss_pred HHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHh---hcC--CCCCeEEecCCccchHHHHHhhcCC
Q 009181 176 VIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRG--ITRPEMIIPVSAHSAYDKAAQYFNI 248 (541)
Q Consensus 176 v~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~---~~G--i~~~~vi~~~~~h~s~~ka~~~~G~ 248 (541)
+++|+++++|++ +++ .+.|++|+|||+|+.+++++++....+ ++| +.+++|+++..+|+++.++++++|+
T Consensus 100 ~~~~la~l~g~~~~~~~---~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~ 176 (502)
T 3hbx_A 100 CVNMIAHLFNAPLEEAE---TAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEV 176 (502)
T ss_dssp HHHHHHHHTTCCCCSSC---CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCccccc---CCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCc
Confidence 999999999998 333 246788999999999999998764322 124 3346999999999999999999999
Q ss_pred eEEEeeCCCC-CccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHc------CCEEEEeCCcccchhhhhh
Q 009181 249 KLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH------GTCLHVDLCLGGFVLPFAK 321 (541)
Q Consensus 249 ~v~~v~~~~~-~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~------~i~lhvD~a~gg~~~~f~~ 321 (541)
+++.||++++ +.+|+++|+++|+++|++|++++|+|++|.++|+++|+++|+++ |+|+|||+||++++.||..
T Consensus 177 ~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~ 256 (502)
T 3hbx_A 177 ELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLY 256 (502)
T ss_dssp EEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHC
T ss_pred eeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhC
Confidence 9999999875 99999999999999999999999999999999999999999999 9999999999999887643
Q ss_pred hcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
.. .++++...++|++++++|||+++|.|+|++++++++.+...+.....|.++........++|++..++++|+++
T Consensus 257 ~~----~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al 332 (502)
T 3hbx_A 257 PE----LEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQL 332 (502)
T ss_dssp TT----CCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHH
T ss_pred cc----cccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHH
Confidence 21 14566678999999999999999999999999988776655556667777766666777899888888999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-CCeeEEEEecCC---CCHHHHHHHHHhCCceeccCCCC----
Q 009181 402 MSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR-PDMTIVAFGSDV---VDIFEVNDIMSSKGWHLNPLQRP---- 473 (541)
Q Consensus 402 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~f~~~~---~~~~~l~~~l~~~G~~~~~~~~~---- 473 (541)
..+|.+++.++.++..++++++++.|+++++++++.+ +..++++|++.+ .+..++.+.|.++|+.+..+..|
T Consensus 333 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~ 412 (502)
T 3hbx_A 333 IRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQ 412 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccC
Confidence 9999999999999999999999999999988999987 788999999865 36779999999999987544333
Q ss_pred --CeEEEEecCCCH-HHHHHHHHHHHHHHHHHHcCCCCC
Q 009181 474 --NSIHICVTLQHV-AVVDVFLRDLRESVETVKQNPGPA 509 (541)
Q Consensus 474 --~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~~~~~ 509 (541)
..+|++++..++ +++++++++|++++++++++|...
T Consensus 413 ~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~~~~~~ 451 (502)
T 3hbx_A 413 HITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRV 451 (502)
T ss_dssp TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 579999987766 999999999999999999887654
No 8
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=6.5e-46 Score=397.77 Aligned_cols=409 Identities=15% Similarity=0.143 Sum_probs=320.4
Q ss_pred hhhhcccCCCccccccCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcccHHHHHHHHHHhhccc
Q 009181 82 QKVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHT 158 (541)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~l~~~-~~~~~~~~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 158 (541)
.++.+...++.+ +...+.++|++|.+ +++++++.+. .++..+|+ ++++|++. ++.. .+..+.+++..+++.
T Consensus 27 ~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~---~~~~~~~~~~~~~n~ 100 (486)
T 1js3_A 27 RQVYPDVQPGYL--RPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFP-TASS---YPAMLADMLCGAIGC 100 (486)
T ss_dssp SCSSCCCCTTCS--GGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSC-CCCC---HHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHH--HHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCC-CCCC---HHHHHHHHHHHHhCc
Confidence 456667777776 45667789999999 9999999986 57778886 88888754 4444 688899999999999
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHhCCCCCCC---CCccceEEcCcHHHHHHHHHHHHHHHHHhh---c-CC-------
Q 009181 159 NPLHLDIFQSVARFEAEVIAMTAALLGNKEKAS---GGQVCGNMTSGGTESILLAVKSSRDYMRNK---R-GI------- 224 (541)
Q Consensus 159 n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~---~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~---~-Gi------- 224 (541)
+..++..+|+..++|+++++|+++++|++.... ++...|++|+|||+|+++++.++++...++ + |-
T Consensus 101 ~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~ 180 (486)
T 1js3_A 101 IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180 (486)
T ss_dssp CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccC
Confidence 999999999999999999999999999985310 000146999999999999999998643220 0 20
Q ss_pred CCCeEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCc------eEEEeecCCCCCccccCHHHHHHH
Q 009181 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT------VLIVGSAPGFPHGIIDPIQELGEL 298 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t------~~vv~~~~~~~~G~id~i~~I~~l 298 (541)
.+..|+++.++|+++.++++++|++++.||+++++++|+++|+++|++++ ++|++++|+|++|.++|+++|+++
T Consensus 181 ~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~l 260 (486)
T 1js3_A 181 EKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPI 260 (486)
T ss_dssp HHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHH
Confidence 01237899999999999999999999999998899999999999998765 599999999999999999999999
Q ss_pred HHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc---CCCCceEEEeCCCCCCCCCCCceEEEEeccccccccccccccc
Q 009181 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF---SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW 375 (541)
Q Consensus 299 a~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~---~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~ 375 (541)
|++||+|+|||+|||++.++ .|.++. ...++|++++++|||+++|.++|+++++++......+...+.|
T Consensus 261 a~~~~~~lhvD~a~g~~~~~--------~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~y 332 (486)
T 1js3_A 261 CHEEDIWLHVDAAYAGSAFI--------CPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332 (486)
T ss_dssp HHHTTCEEEEECTTGGGGGG--------STTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-----
T ss_pred HHHcCCEEEEehhhHHHHHH--------CHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchh
Confidence 99999999999999988763 122221 2346899999999999999999999998876432222111222
Q ss_pred CCC---------ccCCCcccCC-CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEE
Q 009181 376 SGG---------LYVSPTVAGS-RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVA 445 (541)
Q Consensus 376 ~~~---------~~~~~~~~gs-r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~ 445 (541)
..+ .+....+.++ |.+ .+++|++++.+|.+|++++.++..++++++.+.|+++|+++++.+|..++++
T Consensus 333 l~~~~~~~~~~~~~~~~~~~~~rr~~--~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~ 410 (486)
T 1js3_A 333 LKHSHQGSGLITDYRHWQLPLGRRFR--SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVC 410 (486)
T ss_dssp -------CCSCCCGGGSSSCSCCCCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEE
T ss_pred hCCCcccccCCCCccccCCCCCCchh--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEE
Confidence 111 1112233333 444 3499999999999999999999999999999999999999999888889999
Q ss_pred EecCCCC--HHHHHHHHHhCCceecc---CCCCCeEEEEecCC-CH-HHHHHHHHHHHHHHHHHHcCC
Q 009181 446 FGSDVVD--IFEVNDIMSSKGWHLNP---LQRPNSIHICVTLQ-HV-AVVDVFLRDLRESVETVKQNP 506 (541)
Q Consensus 446 f~~~~~~--~~~l~~~l~~~G~~~~~---~~~~~~iRi~~~~~-~~-e~id~~i~~L~~~~~~l~~~~ 506 (541)
|+..+.+ ..++.+.|.++|+.+.. ++..+++|+|++.. ++ ++++++++.|+++++++.++.
T Consensus 411 f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~~ 478 (486)
T 1js3_A 411 FRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAAE 478 (486)
T ss_dssp EEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9987532 47788899888865322 23346899998543 44 899999999999999887654
No 9
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=4.6e-45 Score=392.88 Aligned_cols=401 Identities=16% Similarity=0.182 Sum_probs=311.9
Q ss_pred hhhcccCCCccccc-cCCCCCCCCCCCc-HHHHHHHHHHhC-CCCCCCCCceeeeecCCCCcccHHHHHHHHHHhhcccC
Q 009181 83 KVVDKMQSGVKSKR-EGWWTELPRAGLG-VGVIEKLKEEKG-KDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159 (541)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~lP~~g~~-~~i~~~l~~~~~-~~~~~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n 159 (541)
++.+...++.++.. ...+.++|++|.+ +++++++++... ....|+++++++++ ++.. +..++.+++..+.+.|
T Consensus 45 ~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~---~~~~~~~~l~~~~n~~ 120 (504)
T 2okj_A 45 KVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLS-TGLD---IIGLAGEWLTSTANTN 120 (504)
T ss_dssp CSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCCTTCTTEESSSS-CCCC---HHHHHHHHHHHHHCCB
T ss_pred CCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCEEEEcc-CCCC---HHHHHHHHHHHhhccC
Confidence 35555555555221 1267889999999 999999988744 34445688887664 4444 5677789999888999
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHhCCCC-CCCCCccceEEcCcHHHHHHHHHHHHHHHHH---hhcCCC---CCeEEec
Q 009181 160 PLHLDIFQSVARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRGIT---RPEMIIP 232 (541)
Q Consensus 160 ~~~~~~~~~~~~~e~ev~~~la~l~g~~~-~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~---~~~Gi~---~~~vi~~ 232 (541)
...|..+|...++|.++++|+++++|++. .. .|++|+|||+|+.+++++++++.. +++|.. +.+|+++
T Consensus 121 ~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~-----~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s 195 (504)
T 2okj_A 121 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDG-----DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTS 195 (504)
T ss_dssp SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC-----EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEE
T ss_pred CCchhhChHHHHHHHHHHHHHHHHhCCCCCCC-----CEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEEC
Confidence 98999999999999999999999999984 22 459999999999999999986431 113321 2379999
Q ss_pred CCccchHHHHHhhcCC---eEEEeeCCCCCccCHHHHHHhhcc------CceEEEeecCCCCCccccCHHHHHHHHHHcC
Q 009181 233 VSAHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHG 303 (541)
Q Consensus 233 ~~~h~s~~ka~~~~G~---~v~~v~~~~~~~~d~~~Le~~i~~------~t~~vv~~~~~~~~G~id~i~~I~~la~~~~ 303 (541)
..+|+++.++++.+|+ +++.||+++++++|+++|+++|++ +|++|++++|+|++|.++|+++|+++|++||
T Consensus 196 ~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g 275 (504)
T 2okj_A 196 EQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 275 (504)
T ss_dssp TTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Confidence 9999999999999987 899999988999999999999986 5899999999999999999999999999999
Q ss_pred CEEEEeCCcccchhhhhhhcCCCCCCCCcCC---CCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCc-
Q 009181 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV---QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL- 379 (541)
Q Consensus 304 i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~---~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~- 379 (541)
+|+|||+||+++.++ .+.++... .++|++++++|||+++|.++|++++++++++...+...+.|..+.
T Consensus 276 ~~lhvD~a~~~~~~~--------~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~ 347 (504)
T 2okj_A 276 LWLHVDAAWGGGLLM--------SRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPD 347 (504)
T ss_dssp CEEEEEETTGGGGGG--------CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSC
T ss_pred CEEEEehhhhhHHHh--------CHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCc
Confidence 999999999998764 12232222 367999999999988899999999998765443222233333110
Q ss_pred --------cCCCcc-cCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEec--CCCeeEEEEec
Q 009181 380 --------YVSPTV-AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIG--RPDMTIVAFGS 448 (541)
Q Consensus 380 --------~~~~~~-~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~--~~~~~~v~f~~ 448 (541)
+...++ .++|++++ ++|++++.+|.+|++++.++..++++++.+.|+++|+++++. +|..++++|+.
T Consensus 348 ~~~~~~~~~~~~~~~~~rr~~~l--~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~ 425 (504)
T 2okj_A 348 KQYDVSYDTGDKAIQCGRHVDIF--KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWY 425 (504)
T ss_dssp CSSCGGGCCGGGSSCSSCBCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEE
T ss_pred ccccCcCCcccCCCCCCCCccHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEE
Confidence 112233 34455544 899999999999999999999999999999999999999997 57788899986
Q ss_pred CCCC-----------------HHHHHHHHHhCCcee-c--cCCC-CCeEEEEec-CCCH-HHHHHHHHHHHHHHHHH
Q 009181 449 DVVD-----------------IFEVNDIMSSKGWHL-N--PLQR-PNSIHICVT-LQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 449 ~~~~-----------------~~~l~~~l~~~G~~~-~--~~~~-~~~iRi~~~-~~~~-e~id~~i~~L~~~~~~l 502 (541)
.+.. ..++.+.|.++|+.+ . .... ++++|+|++ ..++ +|++++++.|+++++++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 426 IPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp CCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred eCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4211 346788899999643 2 1222 258999996 5555 99999999999887654
No 10
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=7.3e-45 Score=392.24 Aligned_cols=397 Identities=18% Similarity=0.216 Sum_probs=307.2
Q ss_pred hhhcccCCCccccccCCCCCCCCCCCc-HHHHHHHHHHhCCC-CCCCCCceeeeecCCCCcccHHHHHHHHHHhhcccCC
Q 009181 83 KVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEEKGKD-VVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNP 160 (541)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~l~~~~~~~-~~~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~ 160 (541)
++.+...++.+ +...+.++|++|.+ ++++++++++.... ..|++++++++..+ .. +...+.+++..+.+.+.
T Consensus 64 ~v~~~~~p~~l--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~---~~~~~~~~l~~~~n~~~ 137 (515)
T 2jis_A 64 KVCEWKEPEEL--KQLLDLELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSG-LD---PHALAGRIITESLNTSQ 137 (515)
T ss_dssp CSCCCCCHHHH--HHHHCCCCCSSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCCC-CC---HHHHHHHHHHHHHCCCT
T ss_pred CCCCCCCHHHH--HhhcccCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeCC-CC---HHHHHHHHHHHHhccCC
Confidence 34444444444 33456789999999 99999998874433 33457777766433 44 56677788888888888
Q ss_pred CCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHH---hhcC---CCCCeEEecCC
Q 009181 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRG---ITRPEMIIPVS 234 (541)
Q Consensus 161 ~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~---~~~G---i~~~~vi~~~~ 234 (541)
..|+.+|+..++|.++++|+++++|++.. .|++|+|||+|+.++++++|++.. +.+| ..+.+|+++..
T Consensus 138 ~~~~~s~~~~~le~~~~~~la~l~g~~~~------~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~ 211 (515)
T 2jis_A 138 YTYEIAPVFVLMEEEVLRKLRALVGWSSG------DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKE 211 (515)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHHTCSSC------EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETT
T ss_pred CchhhchHHHHHHHHHHHHHHHHhCCCCC------CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCC
Confidence 88999999999999999999999999854 459999999999999999986432 1133 11238999999
Q ss_pred ccchHHHHHhhcCC---eEEEeeCCCCCccCHHHHHHhhcc------CceEEEeecCCCCCccccCHHHHHHHHHHcCCE
Q 009181 235 AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTC 305 (541)
Q Consensus 235 ~h~s~~ka~~~~G~---~v~~v~~~~~~~~d~~~Le~~i~~------~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~ 305 (541)
+|+++.++++.+|+ +++.||+++++++|+++|+++|++ +|++|++++|+|++|.++|+++|+++|++||+|
T Consensus 212 ~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~ 291 (515)
T 2jis_A 212 CHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLW 291 (515)
T ss_dssp SCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCE
T ss_pred ccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe
Confidence 99999999999998 999999998999999999999986 489999999999999999999999999999999
Q ss_pred EEEeCCcccchhhhhhhcCCCCCCCCcCC---CCceEEEeCCCCCCCCCCCceEEEEecc-cccccccccccccC-CC--
Q 009181 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSV---QGVTSISVDVHKYGLAPKGTSVVLYRNR-EIRKHQFVAVTEWS-GG-- 378 (541)
Q Consensus 306 lhvD~a~gg~~~~f~~~~g~~~p~~~~~~---~gvdsis~~~hK~~~~p~g~g~ll~~~~-~~~~~~~~~~~~~~-~~-- 378 (541)
+|||+||+++.++ .+.+.... .++|++++++|||+++|.|+|+++++++ .++...+...+.|. ++
T Consensus 292 l~vD~a~~~~~~~--------~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~ 363 (515)
T 2jis_A 292 LHVDAAWGGSVLL--------SQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDK 363 (515)
T ss_dssp EEEEETTGGGGGG--------CTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------C
T ss_pred EEEehhhhhHHHh--------ChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcc
Confidence 9999999999875 22233222 3679999999999889999999999987 54432221122222 10
Q ss_pred ------ccCCCc-ccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCC
Q 009181 379 ------LYVSPT-VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV 451 (541)
Q Consensus 379 ------~~~~~~-~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~ 451 (541)
.+..++ ..++|++++ ++|++++.+|.+|++++.++..++++++.+.|+++|+++++.+|..+.++|+..+.
T Consensus 364 ~~~~~~~~~~~~~~~~rr~~al--~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~ 441 (515)
T 2jis_A 364 FYDVALDTGDKVVQCGRRVDCL--KLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPP 441 (515)
T ss_dssp CSCGGGCCGGGCSCSSCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCG
T ss_pred cccccCCCCCCCCCCCCcccHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCc
Confidence 112223 345566654 99999999999999999999999999999999999999999888888899976321
Q ss_pred ---------CH--------HHHHHHHHhCCceeccC----CCCCeEEEEe-cCCCH-HHHHHHHHHHHHHHHH
Q 009181 452 ---------DI--------FEVNDIMSSKGWHLNPL----QRPNSIHICV-TLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 452 ---------~~--------~~l~~~l~~~G~~~~~~----~~~~~iRi~~-~~~~~-e~id~~i~~L~~~~~~ 501 (541)
+. ..+.+.|.++|+.+... +.++++|+|+ +..++ +|++++++.|++++++
T Consensus 442 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 442 SLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp GGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 11 12667788889654321 2246899999 67666 9999999999988653
No 11
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.4e-42 Score=372.77 Aligned_cols=380 Identities=17% Similarity=0.238 Sum_probs=299.7
Q ss_pred CCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcccHHHHHHHHHHhhcccCCCCcccchHHHHHHHHHHH
Q 009181 102 ELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIA 178 (541)
Q Consensus 102 ~lP~~g~~-~~i~~~l~~~-~~~~~~~~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~ 178 (541)
++|++|.+ +++++++.+. .++..+|+ +.+++.+..+ .. ...++.+++....+.|...+..+|...++|.++++
T Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~-~~---~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~ 147 (497)
T 2qma_A 72 DLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTP-PL---MPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVN 147 (497)
T ss_dssp CSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCC-CB---HHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCC-Cc---HHHHHHHHHHHhhcccccchhhChHHHHHHHHHHH
Confidence 57999999 9999999875 67888887 7777766444 33 56777777777778888888889999999999999
Q ss_pred HHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHh--------hcCCC---CC-eEEecCCccchHHHHHhhc
Q 009181 179 MTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN--------KRGIT---RP-EMIIPVSAHSAYDKAAQYF 246 (541)
Q Consensus 179 ~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~--------~~Gi~---~~-~vi~~~~~h~s~~ka~~~~ 246 (541)
|+++++|+++.. .|++|+|||+|+.++++++|++... ++|.. .+ +|+++..+|+++.++++.+
T Consensus 148 ~la~~~g~~~~~-----~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~ 222 (497)
T 2qma_A 148 WLCDKYDLSEKA-----DGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM 222 (497)
T ss_dssp HHHHHTTCCTTC-----EEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHhCCCCCC-----CeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHc
Confidence 999999998644 5599999999999999998875331 23322 14 7999999999999999999
Q ss_pred CC---eEEEeeCCCCCccCHHHHHHhhccC------ceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchh
Q 009181 247 NI---KLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL 317 (541)
Q Consensus 247 G~---~v~~v~~~~~~~~d~~~Le~~i~~~------t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~ 317 (541)
|+ +++.||+++++++|+++|+++|+++ +++|++++++|++|.++|+++|+++|++||+|+|||++|+++..
T Consensus 223 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~ 302 (497)
T 2qma_A 223 GLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALI 302 (497)
T ss_dssp TSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHH
Confidence 87 8999999989999999999999864 55999999999999999999999999999999999999999887
Q ss_pred hhhhhcCCCCCCCCcCC---CCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCC------ccCCCcccCC
Q 009181 318 PFAKKLGYPIPPFDFSV---QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG------LYVSPTVAGS 388 (541)
Q Consensus 318 ~f~~~~g~~~p~~~~~~---~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~------~~~~~~~~gs 388 (541)
+. + ++... .++|++++|+|||+++|.++|+++++++..+... .....|... .+......++
T Consensus 303 ~~--------~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~-~~~~~yl~~~~~~~~~~~~~~~~~~ 372 (497)
T 2qma_A 303 LS--------S-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFL-LHHADYLNREHDELPNLVDKSIATT 372 (497)
T ss_dssp GS--------T-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGG-CC--------------------CCS
T ss_pred hC--------c-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHh-cCCchhcCCccccCCCccccCCCCC
Confidence 52 1 22222 3569999999999999999999999987654322 112222111 1112223344
Q ss_pred C-CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCC------HHHHHHHHH
Q 009181 389 R-PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVD------IFEVNDIMS 461 (541)
Q Consensus 389 r-~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~------~~~l~~~l~ 461 (541)
| +.++ ++|++++.+|.++++++.++..++++++.+.|+++|+++++.++..++++|+..+.. ..++.+.|.
T Consensus 373 r~~~al--~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~ 450 (497)
T 2qma_A 373 KRFDAL--KVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEAL 450 (497)
T ss_dssp CCCTHH--HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CchhHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHH
Confidence 4 3433 899999999999999999999999999999999999999988888899999986532 235667888
Q ss_pred hCCceecc---CCCCCeEEEEe-cCCCH-HHHHHHHHHHHHHHHHH
Q 009181 462 SKGWHLNP---LQRPNSIHICV-TLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 462 ~~G~~~~~---~~~~~~iRi~~-~~~~~-e~id~~i~~L~~~~~~l 502 (541)
++|+.+.. ....+++|+++ +..++ +|++++++.|+++++++
T Consensus 451 ~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 451 TRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp HHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred hCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 89976643 22336899998 55555 99999999999988764
No 12
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.4e-39 Score=335.81 Aligned_cols=380 Identities=26% Similarity=0.419 Sum_probs=308.7
Q ss_pred CCCCCCCc-HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCcccHHHHHHHHHHhhcccCCCCcccchHHHHHHHHHHHH
Q 009181 102 ELPRAGLG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAM 179 (541)
Q Consensus 102 ~lP~~g~~-~~i~~~l~~~~~~~~~~~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~ 179 (541)
.+|+.|.+ +++++.+.++......|. +.++|....+..+ .+.+++...+..+..++..+++..+++.+++++
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLP------ITRKIVDIFLETNLGDPGLFKGTKLLEEKAVAL 77 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCCCCT------HHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCCCcH------HHHHHHHHHHhhcCCCcccChhHHHHHHHHHHH
Confidence 58999999 999999999877666676 6777765433322 345566666666666666778889999999999
Q ss_pred HHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhh--cCC---CCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 180 TAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK--RGI---TRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 180 la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~--~Gi---~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
+++++|.++++ + ++|+|||+|+..++++++.....+ .|. ..++|+++.++|+++..+++..|++++.+|
T Consensus 78 la~~~~~~~~~----i--~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~ 151 (397)
T 3f9t_A 78 LGSLLNNKDAY----G--HIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAP 151 (397)
T ss_dssp HHHHTTCTTCE----E--EEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEEC
T ss_pred HHHHhCCCCCC----E--EEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEe
Confidence 99999998765 5 899999999999999997642110 010 128999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCC----CC
Q 009181 255 VDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI----PP 329 (541)
Q Consensus 255 ~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~----p~ 329 (541)
+++++.+|+++|++++++ ++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+++.+++... +... .+
T Consensus 152 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~-~~~~~~~~~~ 230 (397)
T 3f9t_A 152 IKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDD-KYKKKGVNYK 230 (397)
T ss_dssp BCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCG-GGCCTTCCCC
T ss_pred eCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccc-cccccccccc
Confidence 999999999999999999 99999999999999999999999999999999999999999988765432 1111 14
Q ss_pred CCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHH
Q 009181 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGY 409 (541)
Q Consensus 330 ~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~ 409 (541)
+++.. ++|+++.++||++.+|.++|+++++++.+........+.+.++. .....|++++..++++++++..++..++
T Consensus 231 ~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 307 (397)
T 3f9t_A 231 FDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETR--QATILGTRVGFGGACTYAVLRYLGREGQ 307 (397)
T ss_dssp CSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEECTTSSSSE--ECSSCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhccCCccccCCC--ccccccccccchHHHHHHHHHHHhHHHH
Confidence 56666 89999999999988899999988888765543221112222211 2344578888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHH
Q 009181 410 LENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVV 488 (541)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~i 488 (541)
++..++..++++++.+.|+++ +++++.++..++++|...+ ..++.+.|.++|+.+.....++++|++++..++ +++
T Consensus 308 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i 384 (397)
T 3f9t_A 308 RKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDED--YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHI 384 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTT--HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCC--HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHH
Confidence 999999999999999999998 8888888888999988764 778999999999887766667899999986655 999
Q ss_pred HHHHHHHHHHHH
Q 009181 489 DVFLRDLRESVE 500 (541)
Q Consensus 489 d~~i~~L~~~~~ 500 (541)
++++++|+++++
T Consensus 385 ~~~~~~l~~~l~ 396 (397)
T 3f9t_A 385 DNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
No 13
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=2.3e-35 Score=313.20 Aligned_cols=359 Identities=14% Similarity=0.106 Sum_probs=262.0
Q ss_pred CCCCCCCCc-HHHHHHHHHHhC-CCCCCCCCceeeeecCCCCcccHHHHHHHHH----------HhhcccCCCCcccchH
Q 009181 101 TELPRAGLG-VGVIEKLKEEKG-KDVVWQGKCSGTVYIGGSEAEGHFSLINEAC----------SMFAHTNPLHLDIFQS 168 (541)
Q Consensus 101 ~~lP~~g~~-~~i~~~l~~~~~-~~~~~~~~~~g~~y~~~~~~~~~~~~~~~~~----------~~~~~~n~~~~~~~~~ 168 (541)
.++|++|.+ +++.+.+++... ....|-.+...+.++... ........+ ..++..|+ .+..+|+
T Consensus 56 ~~lp~~g~~~~~i~~~~~~~~~~~~~~yld~aa~~~~~~~v----~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 130 (456)
T 2z67_A 56 RKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREART----YSKIHEELSSGFCHGIGRSGNLVDPQP-KASGASI 130 (456)
T ss_dssp CSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCCCCC----SCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccccccccccccccccccc----cccccCccccccCCCccHHHHHHhhCc-ccccCcH
Confidence 468999999 888888777622 222232111111111110 111111111 11223344 5566678
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHH-HHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcC
Q 009181 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT-ESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (541)
Q Consensus 169 ~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt-~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G 247 (541)
..++++++++++++++|+++. +++|+||| .++..++.+++.+. +| ++|+++..+|+++.++++..|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~-------~~~t~g~te~a~~~al~~~~~~~---~~---~~vi~~~~~h~s~~~~~~~~G 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH-------AIATPISTGMSISLCLSAARKKY---GS---NVVIYPYASHKSPIKAVSFVG 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-------EEEESSCHHHHHHHHHHHHHHHH---CC---CEEEEECCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCC-------EEEeCcHHHHHHHHHHHHHHHhc---CC---CEEEEECCCcHHHHHHHHHcC
Confidence 899999999999999999752 38999999 57777888776422 33 779989999999999999999
Q ss_pred CeEEEeeC---CCCCccCHHHHHHhh-c----cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 248 IKLWRVPV---DKEFRADVKAIKKYI-N----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 248 ~~v~~v~~---~~~~~~d~~~Le~~i-~----~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
++++.++. ++++.+|+++|+++| + .++++|+.++|||++|.++|+++|+++|+++|+|+|||+|||++..++
T Consensus 198 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~ 277 (456)
T 2z67_A 198 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY 277 (456)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred CCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHh
Confidence 99999987 668899999999999 5 378889999999999999999999999999999999999999876643
Q ss_pred hhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHH
Q 009181 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~ 399 (541)
....- -.... ++|++++++|||+++|.|+|++++++++++... .+.|. |.+.+...+++|+
T Consensus 278 ~~~~~-----~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l---~~~~~----------g~~~~~~~~~~~a 338 (456)
T 2z67_A 278 LEKLK-----KAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI---SLSYP----------GRASATPVVNTLV 338 (456)
T ss_dssp HHHHH-----HHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HTTSC----------SCBCSHHHHHHHH
T ss_pred hHHHH-----HhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhc---CcCCC----------CCCCCCHHHHHHH
Confidence 21100 00111 689999999999899999999998776554322 12222 3334444679999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEecCCCeeEEEEec--CCCCHHHHHHHHHhCCc---eec---
Q 009181 400 ALMSLGQEGYLENTKAIMEVSESIQKGIKEIP---ELFIIGRPDMTIVAFGS--DVVDIFEVNDIMSSKGW---HLN--- 468 (541)
Q Consensus 400 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~f~~--~~~~~~~l~~~l~~~G~---~~~--- 468 (541)
++..++.++++++.++..++++++.+.|++++ ++.++.++ ++++|.. ++. ..++.+.|.++|+ -+.
T Consensus 339 al~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~ 415 (456)
T 2z67_A 339 SLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKT 415 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeec
Confidence 99999999999999999999999999999986 77666544 7778876 432 4788999999884 222
Q ss_pred ------c--CCCCCeEEEEecCCCH-HHHHHHHHHHHHHH
Q 009181 469 ------P--LQRPNSIHICVTLQHV-AVVDVFLRDLRESV 499 (541)
Q Consensus 469 ------~--~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~ 499 (541)
. ....+++|+|++..++ +|+|+++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 0 1112689999997765 99999999998764
No 14
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=100.00 E-value=1.1e-34 Score=301.32 Aligned_cols=365 Identities=14% Similarity=0.154 Sum_probs=265.5
Q ss_pred CCCCCCCCc-HHHHHHHHHHh-CCCCCC---------CCCceee--------eecCCCCcccHHHHHHHHHHhhcccCCC
Q 009181 101 TELPRAGLG-VGVIEKLKEEK-GKDVVW---------QGKCSGT--------VYIGGSEAEGHFSLINEACSMFAHTNPL 161 (541)
Q Consensus 101 ~~lP~~g~~-~~i~~~l~~~~-~~~~~~---------~~~~~g~--------~y~~~~~~~~~~~~~~~~~~~~~~~n~~ 161 (541)
..+|++|++ ++|...++++. .+..+| +|+++|. ++++..- ..++ +..|+
T Consensus 21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~~~-------~~d~----l~~~~- 88 (450)
T 3bc8_A 21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGR-------SGDI----SAVQP- 88 (450)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC------------------CC-
T ss_pred ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecchhH-------HHHH----HHhCc-
Confidence 359999999 99999999883 344555 2666665 4444321 1222 33366
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHH-HHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT-ESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt-~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ 240 (541)
.+..+|+..++|.++..|+.+++|+|... .|++++|+| .++.+++.++|.... +| +.|+++..+|.|+.
T Consensus 89 ~~~~~~~~~~~e~~~~~~~~~~lGlp~~~-----~~~lV~GaT~~~~a~~L~aar~~~~--~~---~~viv~r~aHkSv~ 158 (450)
T 3bc8_A 89 KAAGSSLLNKITNSLVLNVIKLAGVHSVA-----SCFVVPMATGMSLTLCFLTLRHKRP--KA---KYIIWPRIDQKSCF 158 (450)
T ss_dssp SBHHHHHHHHHHHHHHHHHHHHHTCTTCC-----EEEEESSCHHHHHHHHHHHHHHHCT--TC---CEEEEECCCCHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHhCCCCCCc-----eEEEECCHHHHHHHHHHHHcchhhc--CC---CEEEEECCcHHHHH
Confidence 77788999999999999999999999776 669999998 667767777775321 24 78999999999999
Q ss_pred HHHhhcCCeEEEeeC---CCCCccCHHHHHHhhcc----CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 241 KAAQYFNIKLWRVPV---DKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 241 ka~~~~G~~v~~v~~---~~~~~~d~~~Le~~i~~----~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+++.++|+.++.|+. ++.+.||+++|+++|++ ++.+|+.+.+++.+|.+|||++|+++|++||+|||||+|||
T Consensus 159 kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G 238 (450)
T 3bc8_A 159 KSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYG 238 (450)
T ss_dssp HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred HHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCc
Confidence 999999999888876 55789999999999975 45677777777767899999999999999999999999999
Q ss_pred cchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch
Q 009181 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (541)
Q Consensus 314 g~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~ 393 (541)
+..... .. .|.-.+...++|+++.|+|||+++|.+++++++++++..+.. ...|.+. .....
T Consensus 239 ~~~~~~-~~----l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~---~~~~~g~----------~s~Sp 300 (450)
T 3bc8_A 239 LQSSKC-MH----LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI---SKMYPGR----------ASASP 300 (450)
T ss_dssp TTCHHH-HH----HHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH---HHHSCSC----------BCSHH
T ss_pred hhhhhh-Hh----HHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHH---HHHhhcC----------CcccH
Confidence 865421 11 000001115789999999999999999999999877655322 1223322 12223
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEecCCCee-EEEEecC------CCCHHHHHHHHHhC
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIP---ELFIIGRPDMT-IVAFGSD------VVDIFEVNDIMSSK 463 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~-~v~f~~~------~~~~~~l~~~l~~~ 463 (541)
.+.+|+++..+|.++|++.+++..++++++++.|++++ ++++++.+... -.++... +.+..++.-.+..+
T Consensus 301 sL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~ 380 (450)
T 3bc8_A 301 SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTR 380 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCC
Confidence 46999999999999999999999999999999999988 88888765431 1223222 23455666666555
Q ss_pred Cc---e--------------ecc------CCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHcC
Q 009181 464 GW---H--------------LNP------LQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQN 505 (541)
Q Consensus 464 G~---~--------------~~~------~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~ 505 (541)
|. - +.. +.....+-+.++..++ +|+++++++|+++.++.+++
T Consensus 381 g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 381 QVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 446 (450)
T ss_dssp TCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 51 1 111 1112456666665455 99999999999998877654
No 15
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=100.00 E-value=8.1e-33 Score=295.10 Aligned_cols=374 Identities=17% Similarity=0.174 Sum_probs=272.2
Q ss_pred CCCCCCCCCc-HHHHHHHHHHhCCCCCC-C-CCceeeeecCCCCcccHHHHHHHHHHhhcccCCCCcc-cchHHHHHHHH
Q 009181 100 WTELPRAGLG-VGVIEKLKEEKGKDVVW-Q-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLD-IFQSVARFEAE 175 (541)
Q Consensus 100 ~~~lP~~g~~-~~i~~~l~~~~~~~~~~-~-~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~e~e 175 (541)
...|| +.+ .++++++.++...+..+ + ..+.|..++...+ .++.++...+.+.|++++. .+++..+++.+
T Consensus 39 ~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~p-----~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~ 111 (474)
T 1wyu_B 39 PPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNP-----KLHEEAARLFADLHPYQDPRTAQGALRLMWE 111 (474)
T ss_dssp CCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCC-----HHHHHHHHTTSSCCTTSCGGGCHHHHHHHHH
T ss_pred CCCCC--CCCHHHHHHHHHHHHhCCCCcccCccccccccccCCH-----HHHHHHHHHHHhcCCCCchhhChHHHHHHHH
Confidence 45788 789 99999999986544332 2 2233434343333 3444444445566777776 68999999999
Q ss_pred HHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcC--CCCCeEEecCCccchHHHHHhhcCCeEEEe
Q 009181 176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG--ITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (541)
Q Consensus 176 v~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~G--i~~~~vi~~~~~h~s~~ka~~~~G~~v~~v 253 (541)
+++++++++|++.. + ++|+|||+|+..++++++.+... +| .++++|+++.+.|+++.++++..|++++.|
T Consensus 112 l~~~la~~~g~~~~-----~--~~~~ggt~a~~~al~~~~~~~~~-~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v 183 (474)
T 1wyu_B 112 LGEYLKALTGMDAI-----T--LEPAAGAHGELTGILIIRAYHED-RGEGRTRRVVLVPDSAHGSNPATASMAGYQVREI 183 (474)
T ss_dssp HHHHHHHHHTCSEE-----E--CCCSSHHHHHHHHHHHHHHHHHH-TTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCce-----e--ecChHHHHHHHHHHHHHHHHHHh-cCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEe
Confidence 99999999999752 2 68899999999999998764322 44 234599999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhccCceEEEeecCCCCCccc-cCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc
Q 009181 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (541)
Q Consensus 254 ~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~i-d~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~ 332 (541)
|+++++.+|+++|+++|+++|++|++++|| ++|.+ +|+++|+++|++||+++|+|++|+.+.+. ..+.
T Consensus 184 ~~~~~~~~d~~~L~~~i~~~t~~v~~~~pn-~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g----------~~~~ 252 (474)
T 1wyu_B 184 PSGPEGEVDLEALKRELGPHVAALMLTNPN-TLGLFERRILEISRLCKEAGVQLYYDGANLNAIMG----------WARP 252 (474)
T ss_dssp CBCTTSSBCHHHHHHHCSTTEEEEEECSSC-TTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTT----------TCCH
T ss_pred cCCCCCCcCHHHHHHhhCCCceEEEEECCC-CCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhcc----------CCCc
Confidence 998899999999999999999999999985 79999 79999999999999999999999755431 1122
Q ss_pred CCCCceEEEeCCCCCCCCCC-----CceEEEEecccccccccccccccCCCcc-C--C-C-----cccCCCCCchHHHHH
Q 009181 333 SVQGVTSISVDVHKYGLAPK-----GTSVVLYRNREIRKHQFVAVTEWSGGLY-V--S-P-----TVAGSRPGGLIAGAW 398 (541)
Q Consensus 333 ~~~gvdsis~~~hK~~~~p~-----g~g~ll~~~~~~~~~~~~~~~~~~~~~~-~--~-~-----~~~gsr~~~~~a~~~ 398 (541)
...|+|++++++||++.+|. ++|+++++++......-.. ..+.+..+ . . + ...++......+++|
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~ 331 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPL-VERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAW 331 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCE-EEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHH
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCe-eeccCCeeEecccCcccCcccccCcCcHHHHHHHH
Confidence 23468999999999977775 6898888765322111000 00000000 0 0 0 000111112355677
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-CeeEEEEecC-CCCHHHHHHHHHhCCceeccCCC----
Q 009181 399 AALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-DMTIVAFGSD-VVDIFEVNDIMSSKGWHLNPLQR---- 472 (541)
Q Consensus 399 ~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~f~~~-~~~~~~l~~~l~~~G~~~~~~~~---- 472 (541)
+.+..+|.+++++..++..++++++.+.|+++ ++++..++ ....+++.+. +.+..++.++|.++|+.+....+
T Consensus 332 ~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~ 410 (474)
T 1wyu_B 332 AYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIV 410 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCcccccccccccc
Confidence 77777788999999999999999999999997 88874332 3322334442 34788999999999987643322
Q ss_pred CCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 473 PNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 473 ~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
++++|++++..++ +++++++++|++++++
T Consensus 411 ~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 411 KEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred CCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 4789999997665 9999999999998754
No 16
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=1.5e-31 Score=275.59 Aligned_cols=309 Identities=18% Similarity=0.211 Sum_probs=241.8
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhh
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~ 245 (541)
.....++..++++++++++|.++++ + ++|+|+|+|+.++++++.... .++| ++|+++.+.|+++..++..
T Consensus 38 ~~~~~~~~~~~~~~la~~~~~~~~~----i--~~~~g~~~a~~~~~~~~~~~~-~~~g---d~vi~~~~~~~~~~~~~~~ 107 (382)
T 4hvk_A 38 GFKAREAVQEAREKVAKLVNGGGGT----V--VFTSGATEANNLAIIGYAMRN-ARKG---KHILVSAVEHMSVINPAKF 107 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEE----E--EEESSHHHHHHHHHHHHHHHH-GGGC---CEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCe----E--EEECCchHHHHHHHHHhhhhh-cCCC---CEEEECCCCcHHHHHHHHH
Confidence 3456778888999999999998764 5 899999999999999886311 1266 8999999999999887766
Q ss_pred ---cCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhh
Q 009181 246 ---FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 246 ---~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~ 322 (541)
.|++++.+|+++++.+|+++|+++++++|++|++++++||+|.+.|+++|.++|++||+ +|+|++++....+
T Consensus 108 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~---- 182 (382)
T 4hvk_A 108 LQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIE---- 182 (382)
T ss_dssp HHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBC----
T ss_pred HHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCC----
Confidence 49999999999999999999999999999999999999999999999999999999999 9999998644332
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHH
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~ 402 (541)
++....++|+++.++||+ ++|.|+|+++++++...... +.++........++.....++++.+++.
T Consensus 183 -------~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~ 248 (382)
T 4hvk_A 183 -------VDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQPV------ILGGGQENGLRSGSENVPSIVGFGKAAE 248 (382)
T ss_dssp -------CCHHHHTCSEEEEESGGG-TSCTTCEEEEEETTCCCCCS------SCSSCTGGGTSCSCCCHHHHHHHHHHHH
T ss_pred -------CCchhcCCCEEEEeHHHh-cCCCceEEEEEcCccCcCcc------cccCCCcCccccCCcCHHHHHHHHHHHH
Confidence 333344679999999997 78999999888766421111 1111111111122222233445555555
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEEecCCCCHHHHHHHHHhCCceeccC---------
Q 009181 403 SLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAFGSDVVDIFEVNDIMSSKGWHLNPL--------- 470 (541)
Q Consensus 403 ~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~--------- 470 (541)
+..+++++..++..++++++.+.|+++|++++..++. .++++|...+.+..++.+.|.++|+.+...
T Consensus 249 -~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~ 327 (382)
T 4hvk_A 249 -ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQ 327 (382)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------C
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCc
Confidence 3356889999999999999999999999999886543 357888887778889999999999866431
Q ss_pred --------CC-----CCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 471 --------QR-----PNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 471 --------~~-----~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
+. ++++|++++..++ +++++++++|+++++++++
T Consensus 328 ~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 328 PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 4789999997665 9999999999999988775
No 17
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=100.00 E-value=5.3e-31 Score=278.27 Aligned_cols=358 Identities=17% Similarity=0.180 Sum_probs=251.2
Q ss_pred CCCCCCCCCc-HHHHHHHHHHhCCCC-CCCCCceeeeecCCCCcccHHHHHHHHH--Hhh-cccCCCCcccchHHHHHHH
Q 009181 100 WTELPRAGLG-VGVIEKLKEEKGKDV-VWQGKCSGTVYIGGSEAEGHFSLINEAC--SMF-AHTNPLHLDIFQSVARFEA 174 (541)
Q Consensus 100 ~~~lP~~g~~-~~i~~~l~~~~~~~~-~~~~~~~g~~y~~~~~~~~~~~~~~~~~--~~~-~~~n~~~~~~~~~~~~~e~ 174 (541)
..+|| +|.+ .++++++.++...+. ++.....++.|+...+ ..+.+++ ..+ ...++++++.+++..+++.
T Consensus 38 ~~~lp-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p-----~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 111 (438)
T 1wyu_A 38 PIDLP-EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVP-----PVVQALAARGEFLTAYTPYQPEVSQGVLQATF 111 (438)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCC-----HHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCc-----HHHHHHHhcchhhhcCCCCcchhhhhHHHHHH
Confidence 67889 7899 999999988743322 2333333333332222 2333332 122 3346677778999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH----hhcCCeE
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNIKL 250 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~----~~~G~~v 250 (541)
++++++++++|+++.+ + ++|+|+|.++..+..+++- ++| ++|+++.+.|+++..++ +..|+++
T Consensus 112 ~~~~~la~~~g~~~~~----i--~~~~g~taa~ea~~~a~~~----~~g---d~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 112 EYQTMIAELAGLEIAN----A--SMYDGATALAEGVLLALRE----TGR---MGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp HHHHHHHHHHTSSEEC----S--CBSSHHHHHHHHHHHHHHH----HTC---CEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCCccc----e--EEeCcHHHHHHHHHHHHhc----CCC---CEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 9999999999998664 5 8999999554444444331 245 89999999999987555 5589999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCC---cccchhhhhhhcCCCC
Q 009181 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC---LGGFVLPFAKKLGYPI 327 (541)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a---~gg~~~~f~~~~g~~~ 327 (541)
+.++. +++.+|+++ |+++|++|++++| |++|.++|+++|+++|+++|+|+|+|.. +|.+. .
T Consensus 179 ~~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~----------~ 242 (438)
T 1wyu_A 179 LTLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK----------P 242 (438)
T ss_dssp EEECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC----------C
T ss_pred EEEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC----------C
Confidence 99998 567888876 7889999999999 9999999999999999999999997754 32211 1
Q ss_pred CCCCcCCCCceEEEeCCCC-----CCCCCCCceEEEEeccccccccccc----ccccCCCc-c-CC--------CcccCC
Q 009181 328 PPFDFSVQGVTSISVDVHK-----YGLAPKGTSVVLYRNREIRKHQFVA----VTEWSGGL-Y-VS--------PTVAGS 388 (541)
Q Consensus 328 p~~~~~~~gvdsis~~~hK-----~~~~p~g~g~ll~~~~~~~~~~~~~----~~~~~~~~-~-~~--------~~~~gs 388 (541)
| ...|+|++++++|| |+++| ++|+++.+++ +.+..... ..++.+.. + .+ ....++
T Consensus 243 ~----~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t 316 (438)
T 1wyu_A 243 P----GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAK 316 (438)
T ss_dssp H----HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSS
T ss_pred C----ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HHHhCCCceeccccccCCCcceeeeccccccccchhccc
Confidence 1 23467999999888 44566 8998777654 33321100 01111100 0 00 000122
Q ss_pred CC---CchHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-CCeeEEEEecCCCCHHHHHHHHHh
Q 009181 389 RP---GGLIAGAWAA--LMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR-PDMTIVAFGSDVVDIFEVNDIMSS 462 (541)
Q Consensus 389 r~---~~~~a~~~~a--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~f~~~~~~~~~l~~~l~~ 462 (541)
.. ...+++++++ +..++.+|++++.++..++++++.+.|+++||+++..+ +...++.+... .+..++.++|.+
T Consensus 317 ~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~ 395 (438)
T 1wyu_A 317 SNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP-KDPEAVRRALAE 395 (438)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS-SCHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC-CCHHHHHHHHHH
Confidence 21 1234455555 77788899999999999999999999999999999876 34566667653 468899999999
Q ss_pred CCcee--cc-C-CCCCeEEEEecCCCH-HHHHHHHHHHHHHH
Q 009181 463 KGWHL--NP-L-QRPNSIHICVTLQHV-AVVDVFLRDLRESV 499 (541)
Q Consensus 463 ~G~~~--~~-~-~~~~~iRi~~~~~~~-e~id~~i~~L~~~~ 499 (541)
+|+.+ .. . ..++.+|+|++..++ +|+++++++|++++
T Consensus 396 ~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 396 RGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp TTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 99877 22 1 125799999998776 99999999998764
No 18
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=3e-31 Score=273.87 Aligned_cols=309 Identities=18% Similarity=0.200 Sum_probs=237.9
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhh
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~ 245 (541)
.+...+...++++++++++|.++++ + ++|+|||+|+.++++++..+. .++| ++|+++.++|+++..++..
T Consensus 38 ~~~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~a~~~~~~~l~~~~-~~~g---d~Vl~~~~~~~~~~~~~~~ 107 (382)
T 4eb5_A 38 GFKAREAVQEAREKVAKLVNGGGGT----V--VFTSGATEANNLAIIGYAMRN-ARKG---KHILVSAVEHMSVINPAKF 107 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEE----E--EEESSHHHHHHHHHHHHHHHH-GGGC---CEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCe----E--EEcCchHHHHHHHHHHHHhhc-cCCC---CEEEECCCcchHHHHHHHH
Confidence 3455677888999999999997654 5 899999999999999987322 1256 8999999999998877764
Q ss_pred ---cCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhh
Q 009181 246 ---FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 246 ---~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~ 322 (541)
.|++++.+|+++++.+|+++|+++++++|++|++++++||+|.+.|+++|.++|++||++ |+|++|+....
T Consensus 108 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~----- 181 (382)
T 4eb5_A 108 LQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQI----- 181 (382)
T ss_dssp HTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTB-----
T ss_pred HHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCc-----
Confidence 699999999988899999999999999999999999999999999999999999999999 99999973222
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHH
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~ 402 (541)
+++....++|+++.++||+ ++|.|+|+++++++...... +.++........++.....++++.++++
T Consensus 182 ------~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~ 248 (382)
T 4eb5_A 182 ------EVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQPV------ILGGGQENGLRSGSENVPSIVGFGKAAE 248 (382)
T ss_dssp ------CCCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCCS------SCSSCTGGGTSCSCCCHHHHHHHHHHHH
T ss_pred ------ccCccccCCCEEEeehHHh-cCCCceEEEEEccccccCce------ecCCCccccccCCCccHHHHHHHHHHHH
Confidence 1222223679999999998 88989998888765311111 1111000011122222223445566666
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEEecCCCCHHHHHHHHHhCCceeccCC--------
Q 009181 403 SLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQ-------- 471 (541)
Q Consensus 403 ~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~-------- 471 (541)
.+. +++++..++..++++++.+.|+++|++++..++. .++++|..++.+..++.+.|.++|+.+....
T Consensus 249 ~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~ 327 (382)
T 4eb5_A 249 ITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQ 327 (382)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCC
T ss_pred HHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCc
Confidence 443 4788999999999999999999998999876542 4578888776678899999999997664321
Q ss_pred --------------CCCeEEEEecCCC-HHHHHHHHHHHHHHHHHHHc
Q 009181 472 --------------RPNSIHICVTLQH-VAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 472 --------------~~~~iRi~~~~~~-~e~id~~i~~L~~~~~~l~~ 504 (541)
.++++|++++..+ .+++++++++|+++++++++
T Consensus 328 ~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 328 PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1468999998665 49999999999999988875
No 19
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=9.1e-30 Score=266.89 Aligned_cols=309 Identities=20% Similarity=0.265 Sum_probs=238.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhc
Q 009181 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF 246 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~ 246 (541)
....+...++++++++++|.++++ + ++|+|||+|+.++++++.+... ++| ++|+++.+.|+++..++..+
T Consensus 64 ~~~~~~~~~l~~~la~~~~~~~~~----v--~~~~ggt~a~~~a~~~l~~~~~-~~g---d~Vl~~~~~~~~~~~~~~~~ 133 (423)
T 3lvm_A 64 WQAEEAVDIARNQIADLVGADPRE----I--VFTSGATESDNLAIKGAANFYQ-KKG---KHIITSKTEHKAVLDTCRQL 133 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHHHHHT-TTC---CEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCe----E--EEeCChHHHHHHHHHHHHHhhc-cCC---CEEEECCccchHHHHHHHHH
Confidence 445667778999999999998765 5 8999999999999998875322 245 89999999999998888555
Q ss_pred ---CCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 247 ---NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 247 ---G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
|++++.+|+++++.+|+++|++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++++....
T Consensus 134 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~------ 207 (423)
T 3lvm_A 134 EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL------ 207 (423)
T ss_dssp HHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS------
T ss_pred HHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999876443
Q ss_pred CCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHH
Q 009181 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS 403 (541)
Q Consensus 324 g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~ 403 (541)
+++....++|+++.++||+ ++|.|+|+++.+++...... ....++........++.+...++++.+++..
T Consensus 208 -----~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 277 (423)
T 3lvm_A 208 -----PIDLSQLKVDLMSFSGHKI-YGPKGIGALYVRRKPRVRIE----AQMHGGGHERGMRSGTLPVHQIVGMGEAYRI 277 (423)
T ss_dssp -----CCCTTTSCCSEEEEESTTT-TSCSSCEEEEECBTTBCCCC----CSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH
T ss_pred -----CcChhhcCCCEEEechHHh-cCCCCeEEEEEeccccCCCC----ccccCCcccccccCCCCCHHHHHHHHHHHHH
Confidence 2344455789999999996 78999998877654322211 1111111111111223233334455566654
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEEecCCCCHHHHHHHHHhCCceecc-----------
Q 009181 404 LGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAFGSDVVDIFEVNDIMSSKGWHLNP----------- 469 (541)
Q Consensus 404 lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f~~~~~~~~~l~~~l~~~G~~~~~----------- 469 (541)
+.. .+++..++..++++++.+.|+++|++++..++. .++++|...+.+..++.+.|.+ +.+..
T Consensus 278 ~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~ 354 (423)
T 3lvm_A 278 AKE-EMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEP 354 (423)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCC
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccc
Confidence 433 378999999999999999999999999987654 4677777776778888888877 33322
Q ss_pred ------CCC-----CCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 470 ------LQR-----PNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 470 ------~~~-----~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
++. ++++|++++..++ ++++++++.|+++++++++
T Consensus 355 ~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 355 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 111 3789999987665 9999999999999998875
No 20
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.98 E-value=4.4e-31 Score=272.70 Aligned_cols=313 Identities=12% Similarity=0.094 Sum_probs=243.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCC--CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch--HHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKE--KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDK 241 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~--~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s--~~k 241 (541)
.+...++..++++++++++|.+. ++ + ++|+|||+|+. ++.++. ++| ++|+++++.|++ +..
T Consensus 30 ~~~~~~~~~~~~~~la~~~~~~~~~~~----v--~~~~g~t~al~-~~~~~~-----~~g---d~vi~~~~~~~~~~~~~ 94 (384)
T 3zrp_A 30 SKEFVEALAYSLKGLRYVMGASKNYQP----L--IIPGGGTSAME-SVTSLL-----KPN---DKILVVSNGVFGDRWEQ 94 (384)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTSEE----E--EEESCHHHHHH-HGGGGC-----CTT---CEEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCcE----E--EEcCCcHHHHH-HHHhhc-----CCC---CEEEEecCCcchHHHHH
Confidence 45557778889999999999987 43 5 89999999999 887663 256 899999999976 667
Q ss_pred HHhhcCCeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhh
Q 009181 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (541)
Q Consensus 242 a~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~ 320 (541)
.++..|++++.+|+++++.+|+++|++++++ ++++|++++++||+|.+.|+++|.++|++||+++|+|++++.+..
T Consensus 95 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~--- 171 (384)
T 3zrp_A 95 IFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAE--- 171 (384)
T ss_dssp HHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTS---
T ss_pred HHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCc---
Confidence 7888999999999998999999999999998 899999999999999999999999999999999999999874433
Q ss_pred hhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccc-ccccccccCCCc--cC---------CCcccCC
Q 009181 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGL--YV---------SPTVAGS 388 (541)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~-~~~~~~~~~~~~--~~---------~~~~~gs 388 (541)
+++....++|+++.++||++++|.|+|+++.+++..... .-.....|.... +. .....|+
T Consensus 172 --------~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 243 (384)
T 3zrp_A 172 --------EVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFAT 243 (384)
T ss_dssp --------CCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSC
T ss_pred --------cccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCC
Confidence 234445578999999999988899999877765432211 000000000000 00 0011123
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC----CeeEEEEecCCCCHHHHHHHHHhCC
Q 009181 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP----DMTIVAFGSDVVDIFEVNDIMSSKG 464 (541)
Q Consensus 389 r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~f~~~~~~~~~l~~~l~~~G 464 (541)
.+...++++.+++..+...+++++.++..++++++.+.|+++ ++++..++ ...+++|..++.+..++.+.|.++|
T Consensus 244 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 322 (384)
T 3zrp_A 244 PPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVADPQKVLAGTVNEG 322 (384)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCCCHHHHHHHHHHCC
Confidence 333345677778877777789999999999999999999998 88887665 3577788887778889999999999
Q ss_pred ceeccCC-CC-CeEEEEecCCCH-HHHHHHHHHHHHHHHHHHcC
Q 009181 465 WHLNPLQ-RP-NSIHICVTLQHV-AVVDVFLRDLRESVETVKQN 505 (541)
Q Consensus 465 ~~~~~~~-~~-~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~ 505 (541)
+.+.... .+ +++|++++..++ +++++++++|+++++++...
T Consensus 323 i~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 366 (384)
T 3zrp_A 323 VEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLGEP 366 (384)
T ss_dssp CCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8765322 11 689999887665 99999999999999988654
No 21
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.98 E-value=2.4e-30 Score=269.93 Aligned_cols=314 Identities=14% Similarity=0.121 Sum_probs=245.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch--HHHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKAA 243 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s--~~ka~ 243 (541)
.+...++..++++++++++|.+..+ ..++|+|||+|+..+++++.+ +| ++|+++.++|++ +..++
T Consensus 41 ~~~~~~~~~~~~~~la~~~~~~~~~-----~v~~~~sgt~al~~~~~~~~~-----~g---d~Vl~~~~~~~~~~~~~~~ 107 (411)
T 3nnk_A 41 DPAMTHYMNEVMALYRGVFRTENRW-----TMLVDGTSRAGIEAILVSAIR-----PG---DKVLVPVFGRFGHLLCEIA 107 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSE-----EEEEESCHHHHHHHHHHHHCC-----TT---CEEEEEECSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCc-----EEEECCCcHHHHHHHHHHhcC-----CC---CEEEEecCCchHHHHHHHH
Confidence 4555677888999999999998654 237889999999999998842 56 899999999988 88999
Q ss_pred hhcCCeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhh
Q 009181 244 QYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 244 ~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~ 322 (541)
+..|++++.+|+++++.+|+++|++++++ ++++|++++|+||+|.+.|+++|.++|++||+++|+|++++....
T Consensus 108 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~----- 182 (411)
T 3nnk_A 108 RRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGN----- 182 (411)
T ss_dssp HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTB-----
T ss_pred HHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCc-----
Confidence 99999999999988999999999999987 899999999999999999999999999999999999999865433
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccc--cccccccccCCCccCC------------------
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRK--HQFVAVTEWSGGLYVS------------------ 382 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~--~~~~~~~~~~~~~~~~------------------ 382 (541)
+++....++|+++.++||++++|.|+|+++.+++.... ......+.|.++....
T Consensus 183 ------~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~ 256 (411)
T 3nnk_A 183 ------PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMD 256 (411)
T ss_dssp ------CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHH
T ss_pred ------ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHh
Confidence 34555668999999999998899999987776543211 1111222333322100
Q ss_pred -----CcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEEecC-CCCH
Q 009181 383 -----PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAFGSD-VVDI 453 (541)
Q Consensus 383 -----~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f~~~-~~~~ 453 (541)
....++.....++++.++++.+...|+++..++..++++++.+.|+++ ++++..++. ..+++|..+ +.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (411)
T 3nnk_A 257 YWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGING 335 (411)
T ss_dssp HHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTCCH
T ss_pred hhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCCCH
Confidence 111233333445677777777777779999999999999999999997 888775543 567888875 4578
Q ss_pred HHHHHHHHhC-CceeccC---CCCCeEEEEe-cCCC-HHHHHHHHHHHHHHHHHHHc
Q 009181 454 FEVNDIMSSK-GWHLNPL---QRPNSIHICV-TLQH-VAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 454 ~~l~~~l~~~-G~~~~~~---~~~~~iRi~~-~~~~-~e~id~~i~~L~~~~~~l~~ 504 (541)
.++.+.|.++ |+.+... ..++++|+++ +..+ .+++++++++|+++++++..
T Consensus 336 ~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 336 DQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLKF 392 (411)
T ss_dssp HHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 8999999877 8876431 2346999998 6554 49999999999999987653
No 22
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.98 E-value=1.1e-30 Score=272.87 Aligned_cols=311 Identities=13% Similarity=0.108 Sum_probs=241.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch--HHHHHh
Q 009181 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKAAQ 244 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s--~~ka~~ 244 (541)
+...++..++++++++++|.++.. + -++|+|||+|+..+++++. ++| ++|+++.+.|++ +..+++
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~~----~-~~~~~s~t~al~~~~~~l~-----~~g---d~Vl~~~~~~~~~~~~~~~~ 106 (416)
T 3isl_A 40 PAFTGIMNETMEMLRELFQTKNRW----A-YPIDGTSRAGIEAVLASVI-----EPE---DDVLIPIYGRFGYLLTEIAE 106 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSE----E-EEEESCHHHHHHHHHHHHC-----CTT---CEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc----E-EEecCcHHHHHHHHHHHhc-----CCC---CEEEEecCCcccHHHHHHHH
Confidence 455677888999999999998764 2 2488999999999998874 256 899999999998 888899
Q ss_pred hcCCeEEEeeCCCCCccCHHHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 245 YFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 245 ~~G~~v~~v~~~~~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
..|++++.+|+++++.+|+++|+++++ ++|++|++++++||+|.+.|+++|.++|++||+++|+|++++.+..
T Consensus 107 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~------ 180 (416)
T 3isl_A 107 RYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGC------ 180 (416)
T ss_dssp HTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTS------
T ss_pred hcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCC------
Confidence 999999999999889999999999998 6899999999999999999999999999999999999999864433
Q ss_pred CCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccccccc---ccccC---------CCc------------
Q 009181 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA---VTEWS---------GGL------------ 379 (541)
Q Consensus 324 g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~---~~~~~---------~~~------------ 379 (541)
+++....++|+++.++||++++|.|+|+++.+++ +....... ...|. ++.
T Consensus 181 -----~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~ 254 (416)
T 3isl_A 181 -----EVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNER-VADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQL 254 (416)
T ss_dssp -----CCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHH-HHHHHHTC------------------CCCCSCSTTCHHHH
T ss_pred -----CcchhhcCCCEEEecCccccCCCCCeEEEEECHH-HHHHhhccccccccccccccchhccCCCCCCccccchHHH
Confidence 2445556899999999999899999998776554 22211100 00110 000
Q ss_pred ----cCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEEecC-CC
Q 009181 380 ----YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAFGSD-VV 451 (541)
Q Consensus 380 ----~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f~~~-~~ 451 (541)
.......++.....++++.+++..+...|+++..+++.++++++.+.|++. ++++..++. ..+++|..+ +.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 333 (416)
T 3isl_A 255 EDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGI 333 (416)
T ss_dssp HHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTC
T ss_pred HhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCC
Confidence 001112233344456677778877777779999999999999999999996 888876543 467888875 45
Q ss_pred CHHHHHHHHHhC-CceeccC---CCCCeEEEEecCCCH-HH-HHHHHHHHHHHHHHHH
Q 009181 452 DIFEVNDIMSSK-GWHLNPL---QRPNSIHICVTLQHV-AV-VDVFLRDLRESVETVK 503 (541)
Q Consensus 452 ~~~~l~~~l~~~-G~~~~~~---~~~~~iRi~~~~~~~-e~-id~~i~~L~~~~~~l~ 503 (541)
+..++.+.|.++ |+.+... ..++++|++++..++ ++ +++++++|+++++++.
T Consensus 334 ~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 334 DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 788999999887 9876532 234799999955444 66 9999999999998764
No 23
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=2.4e-29 Score=259.59 Aligned_cols=308 Identities=21% Similarity=0.232 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH---h
Q 009181 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA---Q 244 (541)
Q Consensus 168 ~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~---~ 244 (541)
...+...++++++++++|.++++ + ++|+|||+|+..++++++.. ..++| ++|+++.++|+++...+ +
T Consensus 41 ~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~a~~~~~~~~~~~-~~~~g---d~vl~~~~~~~~~~~~~~~~~ 110 (384)
T 1eg5_A 41 EANLHMEKAREKVAKVLGVSPSE----I--FFTSCATESINWILKTVAET-FEKRK---RTIITTPIEHKAVLETMKYLS 110 (384)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGG----E--EEESCHHHHHHHHHHHHHHH-TTTTC---CEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCe----E--EEECCHHHHHHHHHHhhhhh-ccCCC---CEEEECCCCchHHHHHHHHHH
Confidence 34566677899999999988664 5 89999999999999998631 01256 89999999999987766 6
Q ss_pred hcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcC--CEEEEeCCcccchhhhhhh
Q 009181 245 YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 245 ~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~--i~lhvD~a~gg~~~~f~~~ 322 (541)
..|++++.+|+++++.+|+++|++++++++++|++++|+||+|.+.|+++|.++|++|| +++|+|++|+....
T Consensus 111 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~----- 185 (384)
T 1eg5_A 111 MKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI----- 185 (384)
T ss_dssp HTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-----
T ss_pred hcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCc-----
Confidence 77999999999888999999999999999999999999999999999999999999999 99999999862211
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccc-ccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
++++...++|++++++||+ ++|.|+|+++.+++. +.. . +.+.........++.+....+++.+++
T Consensus 186 ------~~~~~~~~~di~~~s~sK~-~g~~G~G~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~a~~~al 251 (384)
T 1eg5_A 186 ------PFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVPIRP-L------IHGGGQERGLRSGTQNVPGIVGAARAM 251 (384)
T ss_dssp ------CCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSCCCC-S------BCSSCTTTTTBCSCCCHHHHHHHHHHH
T ss_pred ------ccCchhcCCCEEEecHHHh-cCCCceEEEEEcCCCcccc-c------cccCcccccccCCCCChHHHHHHHHHH
Confidence 1233334689999999998 788889987776542 111 1 111100001112222222344555566
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC---CeeEEEEecCCCCHHHHHHHHHhCCceecc---C-----
Q 009181 402 MSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP---DMTIVAFGSDVVDIFEVNDIMSSKGWHLNP---L----- 470 (541)
Q Consensus 402 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~---~----- 470 (541)
+.+ .+++++..++..++++++.+.|++ +++++..++ ....++|...+.+..++.+.|.++|+.+.. +
T Consensus 252 ~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~ 329 (384)
T 1eg5_A 252 EIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDE 329 (384)
T ss_dssp HHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC---------
T ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCC
Confidence 542 356888999999999999999998 689887654 245777777666788999999999987654 2
Q ss_pred ---------CC-----CCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHcCC
Q 009181 471 ---------QR-----PNSIHICVTLQHV-AVVDVFLRDLRESVETVKQNP 506 (541)
Q Consensus 471 ---------~~-----~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~~ 506 (541)
+. ++++|++++..++ +++++++++|+++++++++++
T Consensus 330 ~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 380 (384)
T 1eg5_A 330 RLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDLTG 380 (384)
T ss_dssp ---CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC----
T ss_pred cchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 2689999986544 999999999999999887654
No 24
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=5.8e-30 Score=267.68 Aligned_cols=312 Identities=20% Similarity=0.220 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHHHHhCC-CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch----HHHHHh
Q 009181 170 ARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQ 244 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~-~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s----~~ka~~ 244 (541)
.....++++.+++++|. ++++ + ++|+|||+|+.+++++++.. ..++| ++|+++.++|++ +...++
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~----v--~~~~g~t~a~~~~~~~~~~~-~~~~g---d~Vl~~~~~~~~~~~~~~~~~~ 140 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPRE----I--VYTRNATEAINLVAYSWGMN-NLKAG---DEIITTVMEHHSNLVPWQMVAA 140 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGG----E--EEESSHHHHHHHHHHHTHHH-HCCTT---CEEEEETTCCGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCe----E--EEcCChHHHHHHHHHHhhhc-ccCCC---CEEEECcchhHHHHHHHHHHHH
Confidence 45566788899999998 4443 5 89999999999999998421 01355 899999999999 677888
Q ss_pred hcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcC
Q 009181 245 YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (541)
Q Consensus 245 ~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g 324 (541)
..|++++.+|+++++.+|+++|++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..+
T Consensus 141 ~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~------ 214 (420)
T 1t3i_A 141 KTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP------ 214 (420)
T ss_dssp HHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC------
T ss_pred hcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCcc------
Confidence 89999999999888999999999999999999999999999999999999999999999999999999754332
Q ss_pred CCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCc--------cCC-C--cccCCCCCch
Q 009181 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL--------YVS-P--TVAGSRPGGL 393 (541)
Q Consensus 325 ~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~--------~~~-~--~~~gsr~~~~ 393 (541)
++....++|+++.++||. ++|.|+|+++.++ ++..........|.... +.. + ...|+..-..
T Consensus 215 -----~~~~~~~~di~~~s~sK~-~~~~g~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (420)
T 1t3i_A 215 -----LDVQLIDCDWLVASGHKM-CAPTGIGFLYGKE-EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAE 287 (420)
T ss_dssp -----CCHHHHTCSEEEEEGGGT-TSCTTCEEEEECH-HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHH
T ss_pred -----CchhhcCCCEEEEehhhh-cCCCceEEEEEch-HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHH
Confidence 222334679999999995 7898999877654 33322211111111000 000 0 0112333333
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-----CeeEEEEecCCCCHHHHHHHHHhCCceec
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-----DMTIVAFGSDVVDIFEVNDIMSSKGWHLN 468 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----~~~~v~f~~~~~~~~~l~~~l~~~G~~~~ 468 (541)
.+++.++++.+...+++++.++..++++++.+.|++++++++..++ ..++++|..++.+..++.+.|.++|+.+.
T Consensus 288 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~ 367 (420)
T 1t3i_A 288 AIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIR 367 (420)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECB
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEe
Confidence 4455556777766678899999999999999999999999988764 37788888765577889999999998765
Q ss_pred cC-----------CCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 469 PL-----------QRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 469 ~~-----------~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
.. +.++++|++++..++ ++++++++.|+++++++++
T Consensus 368 ~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 368 SGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred eccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 43 225789999997655 9999999999999987643
No 25
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.97 E-value=6.1e-31 Score=279.86 Aligned_cols=334 Identities=16% Similarity=0.126 Sum_probs=248.8
Q ss_pred HHHHHHHHHHhhcccCCCCcc-cchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhc
Q 009181 144 HFSLINEACSMFAHTNPLHLD-IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR 222 (541)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~ 222 (541)
..+.+.+.+..+.+.+...+. ..+....+..++++++++++|+++++ + ++|+|+|+++.++++++.+ +
T Consensus 83 v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~----v--~~t~g~t~al~~~~~~~~~-----~ 151 (465)
T 3e9k_A 83 VKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKE----I--ALMNALTVNLHLLMLSFFK-----P 151 (465)
T ss_dssp HHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGG----E--EECSCHHHHHHHHHHHHCC-----C
T ss_pred HHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCC----E--EEECCHHHHHHHHHHHhcc-----c
Confidence 444555555444333222111 12233345566888999999998765 6 9999999999999998853 3
Q ss_pred CCCCCeEEecCCccch----HHHHHhhcCCeE-----EEeeCCCCCccCHHHHHHhhc---cCceEEEeecCCCCCcccc
Q 009181 223 GITRPEMIIPVSAHSA----YDKAAQYFNIKL-----WRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIID 290 (541)
Q Consensus 223 Gi~~~~vi~~~~~h~s----~~ka~~~~G~~v-----~~v~~~~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id 290 (541)
|-.+++|+++.++|++ +...++..|+++ ..+|.++++.+|+++|+++|+ +++++|++++++||+|.+.
T Consensus 152 ~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~ 231 (465)
T 3e9k_A 152 TPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHF 231 (465)
T ss_dssp CSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBC
T ss_pred cCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceee
Confidence 3234779999999998 455777789874 455667789999999999997 6799999999999999999
Q ss_pred CHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCC-CCCCceEEEEeccccccccc
Q 009181 291 PIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQF 369 (541)
Q Consensus 291 ~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~ 369 (541)
|+++|.++|++||+++|+|++++.+.. +++....++|++++++||+++ +|.|+|+++++++ +.....
T Consensus 232 ~l~~i~~la~~~g~~vi~D~a~~~g~~-----------~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~-~~~~~~ 299 (465)
T 3e9k_A 232 NIPAITKAGQAKGCYVGFDLAHAVGNV-----------ELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK-HAHTIK 299 (465)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTTTTS-----------CCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGG-GTTTSC
T ss_pred cHHHHHHHHHHcCCEEEEEhhhhcCCc-----------CCchhhcCCCEEEECcccccccCCCceEEEEEcHH-HHhhcC
Confidence 999999999999999999999875544 244455678999999999974 7777898776543 333222
Q ss_pred ccccccCCCcc---------C------CCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----
Q 009181 370 VAVTEWSGGLY---------V------SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI---- 430 (541)
Q Consensus 370 ~~~~~~~~~~~---------~------~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---- 430 (541)
.....|.++.. . .....|+.+...++++.+++..+...+++++.++..++++++.+.|+++
T Consensus 300 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 379 (465)
T 3e9k_A 300 PALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKD 379 (465)
T ss_dssp CSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 22334433310 0 0112234444557888999988888889999999999999999999985
Q ss_pred ------CCeEEecCCC----eeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEe-cCCCH-HHHHHHHHHHHHH
Q 009181 431 ------PELFIIGRPD----MTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICV-TLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 431 ------~~~~v~~~~~----~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~-~~~~~-e~id~~i~~L~~~ 498 (541)
++++++.+.+ .++++|..+ .+..++.+.|.++|+.+. ...++.+|+++ +.+++ +|++++++.|+++
T Consensus 380 ~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~Gi~v~-~~~~~~iRis~~~~~~t~edi~~~~~~l~~~ 457 (465)
T 3e9k_A 380 KAATKKPVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEKRGVVCD-KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSI 457 (465)
T ss_dssp -------CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTTTEECE-EETTTEEEEBCCTTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHCCEEEe-cCCCCEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 7999987652 678888876 456789999999998765 34468999998 56666 9999999999998
Q ss_pred HHHH
Q 009181 499 VETV 502 (541)
Q Consensus 499 ~~~l 502 (541)
+++.
T Consensus 458 l~~~ 461 (465)
T 3e9k_A 458 LDSA 461 (465)
T ss_dssp HTC-
T ss_pred HHhc
Confidence 8643
No 26
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.9e-30 Score=266.92 Aligned_cols=329 Identities=15% Similarity=0.190 Sum_probs=246.9
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCC-CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC
Q 009181 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~-~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi 224 (541)
..+.+++...... ++ .+....+..++++++++++|.+ +.. + ++|+|||+|+..+++++.+ +|
T Consensus 33 ~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~~~----v--~~~~g~t~a~~~~~~~l~~-----~g- 95 (386)
T 2dr1_A 33 PEVLEIMKVQMFS---HR--SKEYRKVHMDTVERLREFLEVEKGEV----L--LVPSSGTGIMEASIRNGVS-----KG- 95 (386)
T ss_dssp HHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCSSSEE----E--EESSCHHHHHHHHHHHHSC-----TT-
T ss_pred HHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCCcE----E--EEeCChHHHHHHHHHHhhc-----CC-
Confidence 4455555443321 22 2345778888999999999997 332 4 8999999999999998742 56
Q ss_pred CCCeEEecCCccch--HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhh--ccCceEEEeecCCCCCccccCHHHHHHHHH
Q 009181 225 TRPEMIIPVSAHSA--YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYI--NRNTVLIVGSAPGFPHGIIDPIQELGELAL 300 (541)
Q Consensus 225 ~~~~vi~~~~~h~s--~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i--~~~t~~vv~~~~~~~~G~id~i~~I~~la~ 300 (541)
++|+++.++|++ +..+++..|++++.+|+++++.+|+++|++++ .+++++|++++++||+|.+.|+++|.++|+
T Consensus 96 --d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 173 (386)
T 2dr1_A 96 --GKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAK 173 (386)
T ss_dssp --CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHH
T ss_pred --CeEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHH
Confidence 899999999998 88999999999999999888899999999999 468999999999999999999999999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccc-cccccCCCc
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGGL 379 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~-~~~~~~~~~ 379 (541)
+||+++|+|++|+.+..+ +++...++|+++.++||++.+|.|+|+++.+++ +...... ....|....
T Consensus 174 ~~~~~li~D~a~~~~~~~-----------~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (386)
T 2dr1_A 174 EHDKLVFVDAVSAMGGAD-----------IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER-FLEIAEKMPERGWYFDI 241 (386)
T ss_dssp HTTCEEEEECTTTBTTBC-----------CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHH-HHHHHTTCTTCCSTTCH
T ss_pred HcCCeEEEEccccccCcc-----------ccccccCCcEEEEeccccccCCCceEEEEECHH-HHHHHhcCCCCceEEeH
Confidence 999999999999865432 223345789999999999777878998777653 3221100 000110000
Q ss_pred ------cC-CCcccCCCCCchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC---CeeEEEEec
Q 009181 380 ------YV-SPTVAGSRPGGLIAGAWAALMSLGQE-GYLENTKAIMEVSESIQKGIKEIPELFIIGRP---DMTIVAFGS 448 (541)
Q Consensus 380 ------~~-~~~~~gsr~~~~~a~~~~al~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~---~~~~v~f~~ 448 (541)
.. .....++.+....+++.++++.+... ++++..++..++++++.+.|+++ ++++..++ ...++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 320 (386)
T 2dr1_A 242 PLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLT 320 (386)
T ss_dssp HHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEEC
T ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEc
Confidence 00 00112222333355666677666555 68899999999999999999998 88876553 367888887
Q ss_pred C-CCCHHHHHHHHHhCCceeccCC---CCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHcCC
Q 009181 449 D-VVDIFEVNDIMSSKGWHLNPLQ---RPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQNP 506 (541)
Q Consensus 449 ~-~~~~~~l~~~l~~~G~~~~~~~---~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~~ 506 (541)
+ +.+..++.+.|.++|+.+.... .++++|++++..++ +++++++++|+++++++..++
T Consensus 321 ~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 383 (386)
T 2dr1_A 321 PPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELKKQK 383 (386)
T ss_dssp CTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 6 4578899999999998765421 34789999997544 999999999999998876544
No 27
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=8.6e-30 Score=265.00 Aligned_cols=311 Identities=17% Similarity=0.201 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHHHHhCC-CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchH----HHHH
Q 009181 169 VARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DKAA 243 (541)
Q Consensus 169 ~~~~e~ev~~~la~l~g~-~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~----~ka~ 243 (541)
..+...++++.+++++|. ++++ + ++|+|+|+|+.+++++++.. ..++| ++|+++.++|++. ...+
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~~----v--~~~~g~t~a~~~~~~~~~~~-~~~~g---d~vl~~~~~~~~~~~~~~~~~ 134 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAEE----L--VFVRGTTEGINLVANSWGNS-NVRAG---DNIIISQMEHHANIVPWQMLC 134 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGGG----E--EEESSHHHHHHHHHHHTHHH-HCCTT---CEEEEETTCCGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCe----E--EEeCChhHHHHHHHHHhhhh-cCCCC---CEEEEecccchHHHHHHHHHH
Confidence 445666788999999998 4443 5 89999999999999998521 01255 8999999999764 4557
Q ss_pred hhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 244 ~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
+..|++++.+|+++++.+|+++|++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..+
T Consensus 135 ~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~----- 209 (406)
T 1kmj_A 135 ARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP----- 209 (406)
T ss_dssp HHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-----
T ss_pred HhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCC-----
Confidence 788999999999888999999999999999999999999999999999999999999999999999999754332
Q ss_pred CCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCc---------cC---CCcccCCCCC
Q 009181 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL---------YV---SPTVAGSRPG 391 (541)
Q Consensus 324 g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~gsr~~ 391 (541)
++....++|+++.++||. ++|.|+|+++.+ +++..........|.... +. .....|+..-
T Consensus 210 ------~~~~~~~~d~~~~s~~K~-~g~~G~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (406)
T 1kmj_A 210 ------VDVQALDCDFYVFSGHKL-YGPTGIGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNT 281 (406)
T ss_dssp ------CCHHHHTCSEEEEEGGGT-TSCTTCEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCH
T ss_pred ------CcccccCCCEEEEEchhc-cCCCCcEEEEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCH
Confidence 222234679999999997 589899987775 443322111111110000 00 0011223333
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-CeeEEEEecCCCCHHHHHHHHHhCCceecc-
Q 009181 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-DMTIVAFGSDVVDIFEVNDIMSSKGWHLNP- 469 (541)
Q Consensus 392 ~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~- 469 (541)
..++++.++++.+...++++..++..++++++.+.|+++|++++..++ ..++++|..++.+..++.+.|.++|+.+..
T Consensus 282 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 361 (406)
T 1kmj_A 282 GGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTG 361 (406)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEE
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEec
Confidence 334455566666666678899999999999999999999899988653 677888887656788899999999976642
Q ss_pred ----------CCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 470 ----------LQRPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 470 ----------~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
++.++++|++++..++ +|++++++.|+++++.+
T Consensus 362 ~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 362 HHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 2335799999998755 99999999999998765
No 28
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.97 E-value=5.4e-30 Score=266.46 Aligned_cols=309 Identities=19% Similarity=0.184 Sum_probs=216.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCC-eEEecCCccchHHHHHhh
Q 009181 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP-EMIIPVSAHSAYDKAAQY 245 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~-~vi~~~~~h~s~~ka~~~ 245 (541)
....+...++++++++++|.++++ + ++|+|||+|+.++++++..+.. ++| + +|+++...|+++...+..
T Consensus 59 ~~~~~~~~~l~~~la~~~~~~~~~----v--~~~~g~t~al~~~~~~l~~~~~-~~g---d~~Vl~~~~~~~~~~~~~~~ 128 (400)
T 3vax_A 59 IRAKRGVERAREYLASTVSAEPDE----L--IFTSGATESNNIALLGLAPYGE-RTG---RRHIITSAIEHKAVLEPLEH 128 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG----E--EEESCHHHHHHHHHHTTHHHHH-HHT---CCEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCc----E--EEeCCHHHHHHHHHHHHHHhhc-cCC---CCEEEECccccHhHHHHHHH
Confidence 345667778999999999998665 5 8999999999999999863221 255 8 999999999998777665
Q ss_pred ---cCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhh
Q 009181 246 ---FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 246 ---~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~ 322 (541)
.|++++.+|+++++.+|+++|+++++++|++|++++++||+|.+.|+++|.++|++||+++++|++|+.+..+
T Consensus 129 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~---- 204 (400)
T 3vax_A 129 LAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP---- 204 (400)
T ss_dssp HHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG----
T ss_pred HHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC----
Confidence 5999999999999999999999999999999999999999999999999999999999999999999754432
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEE-EecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVL-YRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
.+.... +|+++.++||+ ++|.|+|+++ ++++.+........+.+.++........++.....++++.+++
T Consensus 205 -------~~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 275 (400)
T 3vax_A 205 -------GDLTTP-IDMISISGHKI-GAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAA 275 (400)
T ss_dssp -------GGGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHH
T ss_pred -------cChhhc-CcEEEEeHHHh-CCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHH
Confidence 223333 78999999996 7899999888 7774332110001111111111001112222222334444555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEEecCCCCHHHHHHHHHhCCceecc---------
Q 009181 402 MSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAFGSDVVDIFEVNDIMSSKGWHLNP--------- 469 (541)
Q Consensus 402 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f~~~~~~~~~l~~~l~~~G~~~~~--------- 469 (541)
+.+ .+++++..++..++++++.+.|+ .+++++..++. .+++.|...+.+..++.+.|. +|+.+..
T Consensus 276 ~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~ 352 (400)
T 3vax_A 276 KIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASF 352 (400)
T ss_dssp HHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEE
T ss_pred HHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCC
Confidence 433 35688999999999999999999 88999887654 368888877778889999998 8865432
Q ss_pred --------CCC-----CCeEEEEe-cCCCH-HHHHHHHHHHHHHHHH
Q 009181 470 --------LQR-----PNSIHICV-TLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 470 --------~~~-----~~~iRi~~-~~~~~-e~id~~i~~L~~~~~~ 501 (541)
++. ++++|+++ +..++ +++++++++|++++++
T Consensus 353 ~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 353 TPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp CCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred CccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 122 37899999 76666 9999999999988753
No 29
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=9.5e-30 Score=263.88 Aligned_cols=327 Identities=13% Similarity=0.042 Sum_probs=241.2
Q ss_pred HHHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC
Q 009181 145 FSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (541)
Q Consensus 145 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi 224 (541)
+..+.+++...+.. + ..+.......++++++++++|.+++. + ++|+|||+|+.++++++. ++|
T Consensus 21 ~~~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~g~~~~~----v--~~t~g~t~a~~~~~~~~~-----~~g- 83 (392)
T 2z9v_A 21 YPEVLRGLGRTVLY---D--YDPAFQLLYEKVVDKAQKAMRLSNKP----V--ILHGEPVLGLEAAAASLI-----SPD- 83 (392)
T ss_dssp CHHHHHHTTSCCCC---T--TSHHHHHHHHHHHHHHHHHTTCSSCC----E--EESSCTHHHHHHHHHHHC-----CTT-
T ss_pred CHHHHHHHhccccc---c--ccHHHHHHHHHHHHHHHHHhCCCCCE----E--EEeCCchHHHHHHHHHhc-----CCC-
Confidence 34455555444332 1 13455566778999999999997554 5 899999999999999874 256
Q ss_pred CCCeEEecCCccchH--HHHHhhcCCeEEEeeCCCCCccCHHHHHHhhc--cCceEEEeecCCCCCccccCHHHHHHHHH
Q 009181 225 TRPEMIIPVSAHSAY--DKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN--RNTVLIVGSAPGFPHGIIDPIQELGELAL 300 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~--~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~--~~t~~vv~~~~~~~~G~id~i~~I~~la~ 300 (541)
++|+++.++|+++ ...++..|++++.+|+++++.+|+++|+++++ +++++|++++++||+|.+.|+++|.++|+
T Consensus 84 --d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 161 (392)
T 2z9v_A 84 --DVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVS 161 (392)
T ss_dssp --CCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHH
T ss_pred --CEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHH
Confidence 8999999999886 34556679999999998888999999999994 57999999999999999999999999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccc--cc-cC-
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV--TE-WS- 376 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~--~~-~~- 376 (541)
+||+++|+|++|+.+..+ ++....++|+++.++||++++|.|+|+++.+++ +........ +. |.
T Consensus 162 ~~~~~li~D~a~~~g~~~-----------~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~~~l~~~~~g~~~~~~ 229 (392)
T 2z9v_A 162 AHGAYLIVDAVSSFGGMK-----------THPEDCKADIYVTGPNKCLGAPPGLTMMGVSER-AWAKMKANPLAPRASML 229 (392)
T ss_dssp HTTCEEEEECTTTBTTBS-----------CCGGGGTCSEEEECSSSTTCCCSCCEEEEECHH-HHHHHHTCTTSCCSSTT
T ss_pred HcCCeEEEEcccccCCcc-----------cccccccceEEEecCcccccCCCceeEEEECHH-HHHHhhhccCCCCceec
Confidence 999999999999743322 233334689999999998889999998777654 322110000 00 10
Q ss_pred ------CCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC----CeeEEEE
Q 009181 377 ------GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP----DMTIVAF 446 (541)
Q Consensus 377 ------~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~f 446 (541)
.+........++.....++++.++++.+...|+++..++..++++++.+.|+++ ++++..++ ..++++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 308 (392)
T 2z9v_A 230 SIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAV 308 (392)
T ss_dssp CSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEE
T ss_pred cHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEE
Confidence 000001111233333334566777777666668899999999999999999988 88877633 3567888
Q ss_pred ecC-CCCHHHHHHHHHhC-CceeccC---CCCCeEEEEe-c-CCCHHHHHHHHHHHHHHHHHHH
Q 009181 447 GSD-VVDIFEVNDIMSSK-GWHLNPL---QRPNSIHICV-T-LQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 447 ~~~-~~~~~~l~~~l~~~-G~~~~~~---~~~~~iRi~~-~-~~~~e~id~~i~~L~~~~~~l~ 503 (541)
..+ +.+..++.+.|.++ |+.+... ..++++|+++ . ..+.++++++++.|++++++++
T Consensus 309 ~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 309 RTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 875 45788999999998 9876432 2357899995 5 3455999999999999987764
No 30
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=1.3e-29 Score=262.33 Aligned_cols=308 Identities=18% Similarity=0.202 Sum_probs=234.7
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH---
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--- 242 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka--- 242 (541)
++.......++++.+++++|.++++ + ++|+|||+|+..++++++ -++| ++|+++.++|+++...
T Consensus 54 y~~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~a~~~~~~~~~----~~~g---d~vl~~~~~~~~~~~~~~~ 120 (390)
T 1elu_A 54 NQHIQQLIAQLRQALAETFNVDPNT----I--TITDNVTTGCDIVLWGLD----WHQG---DEILLTDCEHPGIIAIVQA 120 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGG----E--EEESSHHHHHHHHHHHSC----CCTT---CEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHH----E--EEeCChHHHHHHHHhCCC----CCCC---CEEEEecCcccHHHHHHHH
Confidence 3443456667888999999987665 5 899999999999999873 1255 8999999999996543
Q ss_pred -HhhcCCeEEEeeCC--CCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHH----HcCCEEEEeCCcccc
Q 009181 243 -AQYFNIKLWRVPVD--KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL----SHGTCLHVDLCLGGF 315 (541)
Q Consensus 243 -~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~----~~~i~lhvD~a~gg~ 315 (541)
++..|++++.+|++ +++.+|+++|++++++++++|++++++||+|.+.|+++|.++|+ +||+++|+|++|+.+
T Consensus 121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g 200 (390)
T 1elu_A 121 IAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAG 200 (390)
T ss_dssp HHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBT
T ss_pred HHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccC
Confidence 67789999999997 57889999999999999999999999999999999999999999 999999999999743
Q ss_pred hhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCC-------cc-----CCC
Q 009181 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG-------LY-----VSP 383 (541)
Q Consensus 316 ~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~-------~~-----~~~ 383 (541)
.. +++....++|+++.++|||+++|.|+|+++.+++ +..........|... .+ ...
T Consensus 201 ~~-----------~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 268 (390)
T 1elu_A 201 SL-----------PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGGKR 268 (390)
T ss_dssp TB-----------CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGGGG
T ss_pred Cc-----------CCChhhcCCCEEEccccccccCCCceEEEEECHH-hHhhcCCccccCCcccccccCcccccccchHh
Confidence 22 2333445789999999998899999998877643 333221111111000 00 001
Q ss_pred cccCCCCCchHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHhhcCCCeEEecC--CCeeEEEEecC-CCCHHHHHHH
Q 009181 384 TVAGSRPGGLIAGAWAALMSLGQEG-YLENTKAIMEVSESIQKGIKEIPELFIIGR--PDMTIVAFGSD-VVDIFEVNDI 459 (541)
Q Consensus 384 ~~~gsr~~~~~a~~~~al~~lg~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~--~~~~~v~f~~~-~~~~~~l~~~ 459 (541)
...|+.+....+++.++++.+...+ +++..++..++++++.+.|+++++++++.+ +..++++|.++ +.+..++.+.
T Consensus 269 ~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (390)
T 1elu_A 269 FEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQK 348 (390)
T ss_dssp GCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHH
Confidence 1123333233456667777766655 889999999999999999999889998864 35778888774 4578889999
Q ss_pred HHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHH
Q 009181 460 MSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 460 l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~ 498 (541)
|.++|+.+.....++++|++++..++ +++++++++|+++
T Consensus 349 l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 349 LEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp HHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred HHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 99999877654446799999965554 9999999988753
No 31
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.97 E-value=1.3e-29 Score=263.06 Aligned_cols=330 Identities=14% Similarity=0.135 Sum_probs=241.5
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC
Q 009181 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~ 225 (541)
..+.+++...... ++ .+...+...++++++++++|.+++. ++ ++|+|||+|+..+++++.. +|
T Consensus 32 ~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~g~~~~~---~i--~~~~g~t~a~~~~~~~~~~-----~g-- 94 (393)
T 2huf_A 32 QRVLDAMSRPILG---HL--HPETLKIMDDIKEGVRYLFQTNNIA---TF--CLSASGHGGMEATLCNLLE-----DG-- 94 (393)
T ss_dssp HHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCSE---EE--EESSCHHHHHHHHHHHHCC-----TT--
T ss_pred HHHHHHHHhhhcc---CC--CHHHHHHHHHHHHHHHHHhCCCCCc---EE--EEcCcHHHHHHHHHHHHhC-----CC--
Confidence 4455555443332 12 3445667778999999999997642 14 8999999999999998742 56
Q ss_pred CCeEEecCCccchH--HHHHhhcCCeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHc
Q 009181 226 RPEMIIPVSAHSAY--DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSH 302 (541)
Q Consensus 226 ~~~vi~~~~~h~s~--~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~ 302 (541)
++|+++.++|++. ...++..|++++.+|+++++.+|+++|++++++ ++++|++++|+||+|.+.|+++|.++|++|
T Consensus 95 -d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~ 173 (393)
T 2huf_A 95 -DVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQH 173 (393)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHT
T ss_pred -CEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHc
Confidence 8999999999884 345667899999999988889999999999998 899999999999999999999999999999
Q ss_pred CCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccccccc---ccccC---
Q 009181 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA---VTEWS--- 376 (541)
Q Consensus 303 ~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~---~~~~~--- 376 (541)
|+++|+|++++.+.. +++....++|+++.++||++++|.|.|+++.+ +++....... ...|.
T Consensus 174 ~~~li~D~a~~~~~~-----------~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (393)
T 2huf_A 174 NCLLIVDTVASLGGA-----------PMFMDRWEIDAMYTGSQKVLGAPPGITPVSFS-HRAVERYKRRNTKVKVYYWDM 241 (393)
T ss_dssp TCEEEEECTTTBTTB-----------CCCTTTTTCSEEECCSSSTTCCCSSCEEEEEC-HHHHHHHHTCSSCCSCGGGCH
T ss_pred CCEEEEEcccccCCC-----------CcchhhcCccEEEECCCcccccCCCeEEEEEC-HHHHHHHhhcCCCCceEEEch
Confidence 999999999763322 23334457899999999998889999987775 4333221111 11221
Q ss_pred -------CCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEE
Q 009181 377 -------GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAF 446 (541)
Q Consensus 377 -------~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f 446 (541)
++........|+.+...++++.++++.+...++++..++..++++++.+.|+++ ++++..++. ..++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 320 (393)
T 2huf_A 242 SLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTI 320 (393)
T ss_dssp HHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEE
T ss_pred HHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEE
Confidence 100000111223333334455667766665678899999999999999999998 888775532 347778
Q ss_pred ecC-CCCHHHHHHHHHhC-CceeccC---CCCCeEEEEe-cCC-CHHHHHHHHHHHHHHHHHHHcCC
Q 009181 447 GSD-VVDIFEVNDIMSSK-GWHLNPL---QRPNSIHICV-TLQ-HVAVVDVFLRDLRESVETVKQNP 506 (541)
Q Consensus 447 ~~~-~~~~~~l~~~l~~~-G~~~~~~---~~~~~iRi~~-~~~-~~e~id~~i~~L~~~~~~l~~~~ 506 (541)
..+ +.+..++.+.|.++ |+.+... ..++++|+++ +.. +.+++++++++|++++++++...
T Consensus 321 ~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~~ 387 (393)
T 2huf_A 321 KVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPDV 387 (393)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC--
T ss_pred EcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 875 45788999999865 9876542 2357899999 433 34889999999999999886544
No 32
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.97 E-value=1.6e-30 Score=265.19 Aligned_cols=321 Identities=15% Similarity=0.122 Sum_probs=238.5
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcC
Q 009181 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG 223 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~G 223 (541)
..+.+++...+.. + .++...+...++++++++++|.+ +.+ + ++|+|||+|+.++++++.+
T Consensus 13 ~~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~g~~~~~~~----v--~~t~g~t~a~~~~~~~~~~------- 74 (353)
T 2yrr_A 13 ERVQKALLRPMRG---H--LDPEVLRVNRAIQERLAALFDPGEGALV----A--ALAGSGSLGMEAGLANLDR------- 74 (353)
T ss_dssp HHHHGGGGSCCCC---T--TCHHHHHHHHHHHHHHHHHHCCCTTCEE----E--EESSCHHHHHHHHHHTCSC-------
T ss_pred HHHHHHHhccccc---c--cCHHHHHHHHHHHHHHHHHhCCCCCCce----E--EEcCCcHHHHHHHHHHhcC-------
Confidence 4455555444332 1 24556677888999999999996 332 4 8999999999999987741
Q ss_pred CCCCeEEecCCccchH--HHHHhhcCCeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHH
Q 009181 224 ITRPEMIIPVSAHSAY--DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELAL 300 (541)
Q Consensus 224 i~~~~vi~~~~~h~s~--~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~ 300 (541)
++|+++.+.|+++ .+.++..|++++.+|+++++.+|+++|++++++ ++++|++++++||+|.+.|+++|.++|+
T Consensus 75 ---d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 151 (353)
T 2yrr_A 75 ---GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAK 151 (353)
T ss_dssp ---CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred ---CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHH
Confidence 5799999999984 567788899999999988889999999999998 8999999999999999999999999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCC---
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG--- 377 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~--- 377 (541)
+||+++|+|++|+.+..+ ++....++|++++++||++++|.|+|+++.+++.. ..... ...|..
T Consensus 152 ~~~~~li~D~a~~~~~~~-----------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~-~~l~~-~~~~~~~~~ 218 (353)
T 2yrr_A 152 EAGALFFLDAVTTLGMLP-----------FSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEAR-KAFTG-KRGWYLDLA 218 (353)
T ss_dssp HHTCEEEEECTTTTTTSC-----------CCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHH-HHCCC-CSCSTTCHH
T ss_pred HcCCeEEEEcCccccccc-----------ccccccCceEEEecCcccccCCCceEEEEECHHHH-HHhcc-CCCccccHH
Confidence 999999999999633221 22223367999999999888999999877765432 21110 010100
Q ss_pred ---CccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC--CeeEEEEecC-CC
Q 009181 378 ---GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP--DMTIVAFGSD-VV 451 (541)
Q Consensus 378 ---~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~f~~~-~~ 451 (541)
+........++.+...++++.++++.+...++++..++..++++++.+.|+++ ++++..++ ...+++|..+ +.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~ 297 (353)
T 2yrr_A 219 RVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGV 297 (353)
T ss_dssp HHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTC
T ss_pred HHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCC
Confidence 00000111233333334566677777767778999999999999999999998 89987654 3556678875 45
Q ss_pred CHHHHHHHHHhCCceeccC---CCCCeEEEEecCCCH-HHHH-HHHHHHHHHHHH
Q 009181 452 DIFEVNDIMSSKGWHLNPL---QRPNSIHICVTLQHV-AVVD-VFLRDLRESVET 501 (541)
Q Consensus 452 ~~~~l~~~l~~~G~~~~~~---~~~~~iRi~~~~~~~-e~id-~~i~~L~~~~~~ 501 (541)
+..++.+.|.++|+.+... ..++++|++++..++ ++++ +++++|++++++
T Consensus 298 ~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 298 DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 7889999999999776532 235789999955444 8898 999999988753
No 33
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.97 E-value=1.1e-29 Score=259.19 Aligned_cols=320 Identities=13% Similarity=0.041 Sum_probs=239.0
Q ss_pred HHHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC
Q 009181 145 FSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (541)
Q Consensus 145 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi 224 (541)
+..+.+++...+.. + .++...+...++++++++++|.++++ + ++|+|||+|+..+++++.+ +|
T Consensus 13 ~~~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~g~~~~~----i--~~~~g~t~a~~~~~~~~~~-----~g- 75 (352)
T 1iug_A 13 HPKALEALARPQLH---H--RTEAAREVFLKARGLLREAFRTEGEV----L--ILTGSGTLAMEALVKNLFA-----PG- 75 (352)
T ss_dssp CHHHHHHHHSCCCC---T--TSHHHHHHHHHHHHHHHHHHTCSSEE----E--EEESCHHHHHHHHHHHHCC-----TT-
T ss_pred CHHHHHHhccCCCC---c--cCHHHHHHHHHHHHHHHHHhCCCCce----E--EEcCchHHHHHHHHHhccC-----CC-
Confidence 34555666555432 1 24555666778999999999998654 5 8999999999999998742 56
Q ss_pred CCCeEEecCCccchHH--HHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHc
Q 009181 225 TRPEMIIPVSAHSAYD--KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH 302 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~--ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~ 302 (541)
++|+++.++|+++. ..++..|++++.+|+++++.+|+++|++ +++++|++++++||+|.+.|+++|.++|++|
T Consensus 76 --d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 150 (352)
T 1iug_A 76 --ERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFKEK 150 (352)
T ss_dssp --CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHHHH
T ss_pred --CeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHHhh
Confidence 89999999999965 5556689999999998888899999877 6789999999999999999999999999999
Q ss_pred --CCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCc-
Q 009181 303 --GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL- 379 (541)
Q Consensus 303 --~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~- 379 (541)
|+++|+|++|+.+.. +++....++|+++.++||++++|.|+|+++++++.. ..... ..|....
T Consensus 151 ~~~~~li~D~a~~~~~~-----------~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~-~~~~~--~~~~~~~~ 216 (352)
T 1iug_A 151 NPEGLVGADMVTSLLVG-----------EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRAL-ERLKP--RGYYLDLA 216 (352)
T ss_dssp CTTCEEEEECTTTBTTB-----------CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHH-HTCCC--CSSTTCHH
T ss_pred CCCCEEEEECCccccCc-----------ceeccccCeeEEEecCcccccCCCceeEEEECHHHH-HHhhC--CCceeeHH
Confidence 999999999874322 123333468999999999889999999887765433 11100 0000000
Q ss_pred -----cCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-CeeEEEEecC-CCC
Q 009181 380 -----YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-DMTIVAFGSD-VVD 452 (541)
Q Consensus 380 -----~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~f~~~-~~~ 452 (541)
.......++.+...++++.++++.+... +++..++..++++++.+.|+++ ++++..++ ...+++|..+ +.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
T 1iug_A 217 RELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGVP 294 (352)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTCC
T ss_pred HHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCCC
Confidence 0000111222222344566666655444 7889999999999999999998 89887654 5678888876 457
Q ss_pred HHHHHHHHHhCCceeccCC---CCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 453 IFEVNDIMSSKGWHLNPLQ---RPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 453 ~~~l~~~l~~~G~~~~~~~---~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
..++.+.|.++|+.+.... .++++|++++..++ +++++++++|+++++++
T Consensus 295 ~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 295 YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp HHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 8899999999998765432 34789999987764 99999999999998876
No 34
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.97 E-value=3.6e-29 Score=259.15 Aligned_cols=313 Identities=13% Similarity=0.142 Sum_probs=238.9
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch--HHHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKAA 243 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s--~~ka~ 243 (541)
.+...+...++++++++++|.+... ++ ++|+|||+|+..+++++.+ +| ++|+++...|++ +...+
T Consensus 51 ~~~~~~~~~~l~~~la~~~~~~~~~---~v--~~~~gg~~al~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~ 117 (393)
T 3kgw_A 51 QKEMLQIMEEIKQGIQYVFQTRNPL---TL--VVSGSGHCAMETALFNLLE-----PG---DSFLTGTNGIWGMRAAEIA 117 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCSE---EE--EESCCTTTHHHHHHHHHCC-----TT---CEEEEEESSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCc---EE--EEeCCcHHHHHHHHHhcCC-----CC---CEEEEEeCCchhHHHHHHH
Confidence 3455677778999999999997553 14 8999999999999998742 56 899999888863 47888
Q ss_pred hhcCCeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhh
Q 009181 244 QYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 244 ~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~ 322 (541)
+..|++++.+|+++++.+|+++|++++++ ++++|++++|+||+|.+.|+++|.++|++||+++|+|++++.+..
T Consensus 118 ~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~----- 192 (393)
T 3kgw_A 118 DRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGV----- 192 (393)
T ss_dssp HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTS-----
T ss_pred HHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCc-----
Confidence 89999999999988889999999999998 999999999999999999999999999999999999999863322
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccccccccccc-------------CCCccCCCcccCCC
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-------------SGGLYVSPTVAGSR 389 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gsr 389 (541)
+++....++|+++.++||++++|.|+|+++.+++ +..........| .++........++.
T Consensus 193 ------~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
T 3kgw_A 193 ------PIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDK-AKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT 265 (393)
T ss_dssp ------CCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC
T ss_pred ------ccchhhcCCCEEEecCcccccCCCceeEEEECHH-HHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC
Confidence 2444556789999999998889999998777554 322211111111 11111111112233
Q ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC----eeEEEEecC-CCCHHHHHHHHHhC-
Q 009181 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD----MTIVAFGSD-VVDIFEVNDIMSSK- 463 (541)
Q Consensus 390 ~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~----~~~v~f~~~-~~~~~~l~~~l~~~- 463 (541)
....++++.+++..+..+++++..++..++++++.+.|+++ ++++..++. ..+++|..+ +.+..++.+.|.++
T Consensus 266 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (393)
T 3kgw_A 266 PVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHF 344 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 33345566777777777788999999999999999999998 888764322 356667765 34788999999888
Q ss_pred CceeccC---CCCCeEEEEe-cCC-CHHHHHHHHHHHHHHHHHHHc
Q 009181 464 GWHLNPL---QRPNSIHICV-TLQ-HVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 464 G~~~~~~---~~~~~iRi~~-~~~-~~e~id~~i~~L~~~~~~l~~ 504 (541)
|+.+... ..++++|+++ +.. +.+++++++++|+++++++.+
T Consensus 345 gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 345 SIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp CEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred CEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9876542 2357999998 654 459999999999999987754
No 35
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.97 E-value=5.1e-29 Score=259.77 Aligned_cols=304 Identities=16% Similarity=0.154 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhh---
Q 009181 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY--- 245 (541)
Q Consensus 169 ~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~--- 245 (541)
......++++++++++|.++++ + ++|+|+|+++..+++++... .++| ++|+++.++|+++...+..
T Consensus 67 ~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~al~~~~~~l~~~--~~~g---d~vi~~~~~~~~~~~~~~~~~~ 135 (406)
T 3cai_A 67 SAAVLDAAREAVADLVNADPGG----V--VLGADRAVLLSLLAEASSSR--AGLG---YEVIVSRLDDEANIAPWLRAAH 135 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGG----E--EEESCHHHHHHHHHHHTGGG--GBTT---CEEEEETTSCGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCe----E--EEeCChHHHHHHHHHHHhhc--cCCC---CEEEEcCCccHHHHHHHHHHHH
Confidence 4566677999999999997654 5 89999999999988876211 1255 8999999999986555543
Q ss_pred -cCCeEEEeeCC-CCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 246 -FNIKLWRVPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 246 -~G~~v~~v~~~-~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
.|++++.+|++ +++.+|+++|+++++++|++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+..+
T Consensus 136 ~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~----- 210 (406)
T 3cai_A 136 RYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRL----- 210 (406)
T ss_dssp HHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCC-----
T ss_pred hcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCC-----
Confidence 79999999998 68899999999999999999999999999999999999999999999999999998743321
Q ss_pred CCCCCCCCcCCCCceEEEeCCCCCCCCCCCce-EEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHH
Q 009181 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTS-VVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (541)
Q Consensus 324 g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~ 402 (541)
++....++|+++.++||+ ++|. +| +++.++ ++..........| ++........|+.....++++.++++
T Consensus 211 ------~~~~~~~~d~~~~s~~K~-~g~~-~G~~~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~t~~~~~~~a~~~al~ 280 (406)
T 3cai_A 211 ------LDIRETDADVVTVNAHAW-GGPP-IGAMVFRDP-SVMNSFGSVSTNP-YATGPARLEIGVHQFGLLAGVVASIE 280 (406)
T ss_dssp ------CCHHHHCCSEEEEEGGGG-TSCS-CEEEEESCH-HHHHTSCCCCSCT-TCCGGGGGCCSCCCHHHHHHHHHHHH
T ss_pred ------CCchhcCCCEEEeehhhh-cCCC-cCeEEEEeh-HHHhhcCCcccCC-CCCccccccCCCccHHHHHHHHHHHH
Confidence 233334689999999998 5775 77 766554 4332211111111 11100001123322233445555665
Q ss_pred HHhHH--------------HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC--CeeEEEEecCCCCHHHHHHHHHhCCce
Q 009181 403 SLGQE--------------GYLENTKAIMEVSESIQKGIKEIPELFIIGRP--DMTIVAFGSDVVDIFEVNDIMSSKGWH 466 (541)
Q Consensus 403 ~lg~~--------------g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~f~~~~~~~~~l~~~l~~~G~~ 466 (541)
.+... ++++..++..++++++.+.|+++|++++..++ ..++++|..++.+..++.+.|.++|+.
T Consensus 281 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~ 360 (406)
T 3cai_A 281 YLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGIL 360 (406)
T ss_dssp HHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEE
T ss_pred HHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcE
Confidence 54321 47888999999999999999999899987653 356788887766788999999999976
Q ss_pred eccC---------CC---CCeEEEEecCCCH-HHHHHHHHHHHHH
Q 009181 467 LNPL---------QR---PNSIHICVTLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 467 ~~~~---------~~---~~~iRi~~~~~~~-e~id~~i~~L~~~ 498 (541)
+... +. .+++|++++..++ ++++++++.|+++
T Consensus 361 v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 361 AIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp CEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred EecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 6432 21 3689999987765 8999999998753
No 36
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=3.4e-29 Score=259.91 Aligned_cols=323 Identities=15% Similarity=0.129 Sum_probs=241.5
Q ss_pred HHHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCC-CCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcC
Q 009181 145 FSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG 223 (541)
Q Consensus 145 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~-~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~G 223 (541)
+..+.+++...... ++ .+...++..++++++++++|.+++ + + ++|+|||+|+..+++++.+ +|
T Consensus 46 ~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~~~----v--~~t~g~t~al~~~~~~~~~-----~g 109 (393)
T 1vjo_A 46 HPSVLQAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENPLT----I--AVSGTGTAAMEATIANAVE-----PG 109 (393)
T ss_dssp CHHHHHHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCSCE----E--EESSCHHHHHHHHHHHHCC-----TT
T ss_pred CHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCCcE----E--EEeCchHHHHHHHHHhccC-----CC
Confidence 34455666544332 22 234567788899999999999766 4 5 8999999999999999852 56
Q ss_pred CCCCeEEecCCccch--HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHH
Q 009181 224 ITRPEMIIPVSAHSA--YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELAL 300 (541)
Q Consensus 224 i~~~~vi~~~~~h~s--~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~ 300 (541)
++|+++.++|++ +..+++..|++++.+|+++++.+|+++|++++++ ++++|++++|+||+|.+.|+++|.++|+
T Consensus 110 ---d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 186 (393)
T 1vjo_A 110 ---DVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCR 186 (393)
T ss_dssp ---CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred ---CEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHH
Confidence 899999999999 9999999999999999988889999999999998 8999999999999999999999999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccc---cccccCC
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV---AVTEWSG 377 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~---~~~~~~~ 377 (541)
+||+++|+|++|+.... +++....++|+++.++||++++|.++|+++.+++ +...... ....|..
T Consensus 187 ~~~~~li~Dea~~~g~~-----------~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~~~ 254 (393)
T 1vjo_A 187 EFGTLLLVDTVTSLGGV-----------PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR-AIEKLQRRRTKVANWYL 254 (393)
T ss_dssp HHTCEEEEECTTTTTTS-----------CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHH-HHHHHHTCSSCCSCSTT
T ss_pred HcCCEEEEECCccccCc-----------CCcccccCccEEEEcCcccccCCCceEEEEECHH-HHHHHhccCCCCCceec
Confidence 99999999999972211 2334456789999999999888888998777654 2221100 0011110
Q ss_pred Cc-----c-CC-CcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEEe
Q 009181 378 GL-----Y-VS-PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAFG 447 (541)
Q Consensus 378 ~~-----~-~~-~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f~ 447 (541)
+. + .. ....|+.+....+++.++++.+...++++..++..++++++.+.|+++ ++++..++. ..+++|.
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 333 (393)
T 1vjo_A 255 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVC 333 (393)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEE
T ss_pred CcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEE
Confidence 00 0 00 111113333345566777776656678899999999999999999998 888775432 3577887
Q ss_pred cC-CCCHHHHHHHHHhC-CceeccC---CCCCeEEEEe-cCCCH-HHHHHHHHHHHHHH
Q 009181 448 SD-VVDIFEVNDIMSSK-GWHLNPL---QRPNSIHICV-TLQHV-AVVDVFLRDLRESV 499 (541)
Q Consensus 448 ~~-~~~~~~l~~~l~~~-G~~~~~~---~~~~~iRi~~-~~~~~-e~id~~i~~L~~~~ 499 (541)
.+ +.+..++.+.|.++ |+.+... ..++++|+++ +..++ +++++++++|++++
T Consensus 334 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 334 IPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 74 45788999999988 9876432 2357999995 33333 67999999999875
No 37
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.97 E-value=3.8e-29 Score=256.03 Aligned_cols=303 Identities=14% Similarity=0.074 Sum_probs=228.6
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch--HHHH
Q 009181 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA 242 (541)
Q Consensus 165 ~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s--~~ka 242 (541)
..+...++..++++++++++|.+..+ ++ ++|+|||+|+.++++++.. +++++....|++ +...
T Consensus 37 ~~~~~~~~~~~~~~~la~~~g~~~~~---~v--~~~~g~t~al~~~~~~l~~----------~~~i~~~~~~~~~~~~~~ 101 (362)
T 3ffr_A 37 RSKKFEEVYKTASDNLKTLLELPSNY---EV--LFLASATEIWERIIQNCVE----------KKSFHCVNGSFSKRFYEF 101 (362)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCTTE---EE--EEESCHHHHHHHHHHHHCS----------SEEEEEECSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCc---EE--EEeCCchHHHHHHHHhccC----------CcEEEEcCcHHHHHHHHH
Confidence 35677788888999999999996433 24 8999999999999998752 356666666666 4456
Q ss_pred HhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHc-CCEEEEeCCcccchhhhhh
Q 009181 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH-GTCLHVDLCLGGFVLPFAK 321 (541)
Q Consensus 243 ~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~-~i~lhvD~a~gg~~~~f~~ 321 (541)
++..|++++.++.++++.+|+++|+ ++++|++|++++|+||+|.+.|+++|+++|++| |+++|+|++++.+..+
T Consensus 102 ~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~--- 176 (362)
T 3ffr_A 102 AGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPK--- 176 (362)
T ss_dssp HHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSC---
T ss_pred HHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcc---
Confidence 7788999999999888999999999 788999999999999999999999999999999 9999999998644321
Q ss_pred hcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccccccccccc-CCCccC----------CCcccCCCC
Q 009181 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-SGGLYV----------SPTVAGSRP 390 (541)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~gsr~ 390 (541)
.+.. .+|+++.++||++.+|.|+|+++.+++ +..........+ ..+.+. .....++.+
T Consensus 177 --------~~~~--~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (362)
T 3ffr_A 177 --------FDWT--KIDSVFFSVQKCFGLPAGLGVWILNDR-VIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPN 245 (362)
T ss_dssp --------CCTT--SCSEEEEETTSTTCCCSCCEEEEEEHH-HHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCC
T ss_pred --------cChh--HCcEEEEecccccCCCCceEEEEECHH-HHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCch
Confidence 2222 279999999999766999998666543 322211111000 000000 001123333
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC----CeeEEEEecCCCCHHHHHHHHHhCCce
Q 009181 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP----DMTIVAFGSDVVDIFEVNDIMSSKGWH 466 (541)
Q Consensus 391 ~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~----~~~~v~f~~~~~~~~~l~~~l~~~G~~ 466 (541)
...++++.++++.+..++++++.++..++++++.+.|+++|++++..++ ...+++|..++ +..++.+.|.++|+.
T Consensus 246 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~ 324 (362)
T 3ffr_A 246 AMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-LPGEINKILEPFDMA 324 (362)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-CHHHHHHHHGGGTEE
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-CHHHHHHHHHHCCeE
Confidence 3345567777777767778999999999999999999999999988632 35678888776 888999999999987
Q ss_pred ecc---CCCCCeEEEEecCCCH-HHHHHHHHHHHHHH
Q 009181 467 LNP---LQRPNSIHICVTLQHV-AVVDVFLRDLRESV 499 (541)
Q Consensus 467 ~~~---~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~ 499 (541)
+.. ...++++|++++..++ ++++++++.|+++.
T Consensus 325 ~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 325 VGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp EEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 653 1235789999987655 99999999998764
No 38
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.97 E-value=2.3e-28 Score=253.78 Aligned_cols=311 Identities=13% Similarity=0.167 Sum_probs=235.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCC-CCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH--HH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD--KA 242 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~-~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~--ka 242 (541)
.+.......++++.+++++|.+++ + + ++|+|||+|+..+++++.+ +| ++|+++.++|+++. ..
T Consensus 46 ~~~~~~~~~~l~~~la~~~~~~~~~~----v--~~~~g~t~al~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~ 111 (396)
T 2ch1_A 46 HAELFRTMDEVKDGLRYIFQTENRAT----M--CVSGSAHAGMEAMLSNLLE-----EG---DRVLIAVNGIWAERAVEM 111 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCE----E--EESSCHHHHHHHHHHHHCC-----TT---CEEEEEESSHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhCCCCCcE----E--EECCcHHHHHHHHHHHhcC-----CC---CeEEEEcCCcccHHHHHH
Confidence 344445667799999999999876 4 5 8999999999999998742 56 89999999999984 57
Q ss_pred HhhcCCeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhh
Q 009181 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (541)
Q Consensus 243 ~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~ 321 (541)
++..|++++.+|+++++.+|+++|++++++ ++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+....
T Consensus 112 ~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~---- 187 (396)
T 2ch1_A 112 SERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGV---- 187 (396)
T ss_dssp HHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB----
T ss_pred HHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCC----
Confidence 888999999999988889999999999988 899999999999999999999999999999999999999873322
Q ss_pred hcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccccccc---ccc-----------cCCCccCCCcccC
Q 009181 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA---VTE-----------WSGGLYVSPTVAG 387 (541)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~g 387 (541)
+++....++|+++.++||++++|.|+|+++++++ ........ ... |... .......+
T Consensus 188 -------~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 258 (396)
T 2ch1_A 188 -------PFYMDKWEIDAVYTGAQKVLGAPPGITPISISPK-ALDVIRNRRTKSKVFYWDLLLLGNYWGCY-DEPKRYHH 258 (396)
T ss_dssp -------CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-HHHHHHTCSSCCSCGGGCHHHHHHHTTCS-SSCCCCCC
T ss_pred -------ccchhhcCcCEEEEcCCccccCCCCeEEEEECHH-HHHhhhhccCcccceEechHHHHHhhhhh-cccCCCCC
Confidence 2344556789999999999889999998777653 32211000 000 1000 00011122
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC----eeEEEEecC-CCCHHHHHHHHHh
Q 009181 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD----MTIVAFGSD-VVDIFEVNDIMSS 462 (541)
Q Consensus 388 sr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~----~~~v~f~~~-~~~~~~l~~~l~~ 462 (541)
+.+....+++.++++.+..+++++..++..++++++.+.|+++ +++++.++. ..+++|..+ +.+..++.+.|.+
T Consensus 259 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 337 (396)
T 2ch1_A 259 TVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMN 337 (396)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 2232334566667776666778899999999999999999988 888775432 137788775 4578899999987
Q ss_pred C-CceeccC---CCCCeEEEEe-cCC-CHHHHHHHHHHHHHHHHHHHc
Q 009181 463 K-GWHLNPL---QRPNSIHICV-TLQ-HVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 463 ~-G~~~~~~---~~~~~iRi~~-~~~-~~e~id~~i~~L~~~~~~l~~ 504 (541)
+ |+.+... ..++++|+++ +.. +.+++++++++|+++++++..
T Consensus 338 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 338 NFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp HHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred hCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 5 9876542 2357899999 433 458999999999999988753
No 39
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=250.85 Aligned_cols=375 Identities=15% Similarity=0.181 Sum_probs=254.7
Q ss_pred CCCCCCCCc-HHHHHHHHHHhC-CCCCCCCCceeeeecCCCCcccHHHHHHHHHHhhcccCC-------CCccc--chHH
Q 009181 101 TELPRAGLG-VGVIEKLKEEKG-KDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNP-------LHLDI--FQSV 169 (541)
Q Consensus 101 ~~lP~~g~~-~~i~~~l~~~~~-~~~~~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~n~-------~~~~~--~~~~ 169 (541)
-.+|++|++ +.|.-.+.++.. +..+|.+++. -|..++-....++.+-.-.+.+.-. .+|.+ +...
T Consensus 39 r~~P~~g~~d~~ie~~l~~la~mdsnn~~~~~g----~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssll 114 (501)
T 3hl2_A 39 GKCPENGWDESTLELFLHELAIMDSNNFLGNCG----VGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLL 114 (501)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHTTBGGGCSSCCC----CSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHHH
T ss_pred CCCCccCCCHHHHHHHHHHHHhhccCCCcccCC----cccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHHH
Confidence 359999999 777666677633 3333433221 1333333345566554333322211 11211 1222
Q ss_pred HH-HHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCC
Q 009181 170 AR-FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI 248 (541)
Q Consensus 170 ~~-~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~ 248 (541)
.+ .+..+.+|++.+ |++... ..++++|+|.++..+++++....+. .| +.||++..+|.|+.+++.++|+
T Consensus 115 ~~ltn~l~ld~L~~~-G~~~~~-----~~flVnGsTgg~lamilaa~r~~rp-g~---d~VIvpRn~HKSv~kAliL~Gl 184 (501)
T 3hl2_A 115 NKITNSLVLDIIKLA-GVHTVA-----NCFVVPMATGMSLTLCFLTLRHKRP-KA---KYIIWPRIDQKSCFKSMITAGF 184 (501)
T ss_dssp HHHHHHHHHHHHHHT-TCTTCC-----EEEEESSCHHHHHHHHHHHHHHHCT-TC---CEEEEECCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc-CCCCCC-----cEEEECcHHHHHHHHHHHHcCcccC-CC---CEEEEecchHHHHHHHHHHcCC
Confidence 33 345567777777 999765 4589999997777777776542211 23 7899999999999999999999
Q ss_pred eEEEeeC---CCCCccCHHHHHHhhccC---ce-EEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhh
Q 009181 249 KLWRVPV---DKEFRADVKAIKKYINRN---TV-LIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (541)
Q Consensus 249 ~v~~v~~---~~~~~~d~~~Le~~i~~~---t~-~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~ 321 (541)
++++|+. ++...+|+++++++|+++ .+ +|+.+.++|..|.++||++|+++|++||+|+|||+|||+...++..
T Consensus 185 ~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~ 264 (501)
T 3hl2_A 185 EPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMH 264 (501)
T ss_dssp EEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHH
T ss_pred eEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhh
Confidence 9999987 346789999999999763 33 4444444444457799999999999999999999999987653221
Q ss_pred hcCCCCCCCCcCCCC-ceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHH
Q 009181 322 KLGYPIPPFDFSVQG-VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA 400 (541)
Q Consensus 322 ~~g~~~p~~~~~~~g-vdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~a 400 (541)
.|.-.+. .| +|+++.|+||+++.|.|+++++.++++..+.. ...| +|+++++..+.+|++
T Consensus 265 -----lp~sA~~-~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~---~~~y----------PGr~S~Spsldl~~t 325 (501)
T 3hl2_A 265 -----LIQQGAR-VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEI---SKMY----------PGRASASPSLDVLIT 325 (501)
T ss_dssp -----HHHHHHH-HSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HHTS----------CSCBCSHHHHHHHHH
T ss_pred -----hHHHHHh-cCCCcEEEecccccceeecCceEEEeCCHHHHHHH---HHhC----------CCCCCCcHHHHHHHH
Confidence 1111112 25 89999999999999999888778887655432 1111 367778888899999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEecCC-CeeEEEEecCCC------CHHHHHHHHHhCCce----
Q 009181 401 LMSLGQEGYLENTKAIMEVSESIQKGIKEIP---ELFIIGRP-DMTIVAFGSDVV------DIFEVNDIMSSKGWH---- 466 (541)
Q Consensus 401 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~-~~~~v~f~~~~~------~~~~l~~~l~~~G~~---- 466 (541)
+..+|.+||++++++.++++++|++.|+++. |-+++..+ ...-+++..... +..++...|-.+++.
T Consensus 326 LL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rv 405 (501)
T 3hl2_A 326 LLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV 405 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCccee
Confidence 9999999999999999999999999999852 45666555 333445554332 256778888887621
Q ss_pred e-------------ccCC-----CC-CeEEEEecC-CCHHHHHHHHHHHHHHHHHHHcCCCC
Q 009181 467 L-------------NPLQ-----RP-NSIHICVTL-QHVAVVDVFLRDLRESVETVKQNPGP 508 (541)
Q Consensus 467 ~-------------~~~~-----~~-~~iRi~~~~-~~~e~id~~i~~L~~~~~~l~~~~~~ 508 (541)
+ ..++ +| +++-++... .+.+|||.|+++|+++++++++...+
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~~ 467 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSK 467 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC----
T ss_pred ecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 1111 11 456665543 34599999999999999999876644
No 40
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=2.6e-28 Score=251.55 Aligned_cols=310 Identities=10% Similarity=0.084 Sum_probs=230.0
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH--HHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD--KAA 243 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~--ka~ 243 (541)
.+...++..++++++++++|.+.+. ++ .++|+|||+|+.++++++.+ +| ++|+++.+.+++.. ..+
T Consensus 47 ~~~~~~~~~~~~~~la~~~g~~~~~---~~-i~~~~ggt~al~~~~~~~~~-----~g---d~vi~~~~~~~~~~~~~~~ 114 (376)
T 3f0h_A 47 TTEFSSTMLENEKFMLEYAKAPEGS---KA-VFMTCSSTGSMEAVVMNCFT-----KK---DKVLVIDGGSFGHRFVQLC 114 (376)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTC---EE-EEESSCHHHHHHHHHHHHCC-----TT---CCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCc---eE-EEEcCChhHHHHHHHHhccC-----CC---CeEEEEeCChhhHHHHHHH
Confidence 4556677788999999999998542 12 24599999999999998753 56 88999987666643 457
Q ss_pred hhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 244 ~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
...|++++.++.++++.+|+++|++++++++++|++++|+||+|.+.|+++|.++|++||+++|+|++++.+..+
T Consensus 115 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~----- 189 (376)
T 3f0h_A 115 EIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADP----- 189 (376)
T ss_dssp HHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSC-----
T ss_pred HHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcc-----
Confidence 778999999999888999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccc-cccccCCC--cc----CCCcccCCCCCchHHH
Q 009181 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGG--LY----VSPTVAGSRPGGLIAG 396 (541)
Q Consensus 324 g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~-~~~~~~~~--~~----~~~~~~gsr~~~~~a~ 396 (541)
++....|+|+++.++||++.+|.|+|+++.+++ +...... ....|... .. .......+.+...+++
T Consensus 190 ------~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 262 (376)
T 3f0h_A 190 ------FNMNECGADVMITGSQKVLACPPGISVIVLAPR-GVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQ 262 (376)
T ss_dssp ------CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHH-HHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred ------ccccccCccEEEecCcccccCCCceEEEEECHH-HHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHH
Confidence 333445689999999999776999998666543 3221110 00110000 00 0000011111122356
Q ss_pred HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC-eeEEEEecCCCCHHHHHHHHHhC-CceeccC---
Q 009181 397 AWAALMSLGQE-GYLENTKAIMEVSESIQKGIKEIPELFIIGRPD-MTIVAFGSDVVDIFEVNDIMSSK-GWHLNPL--- 470 (541)
Q Consensus 397 ~~~al~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-~~~v~f~~~~~~~~~l~~~l~~~-G~~~~~~--- 470 (541)
+.+++..+... ++++..++..++++++.+.|+++ ++++..++. ..++.+...+.+..++.+.|.++ |+.+...
T Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~ 341 (376)
T 3f0h_A 263 INERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGE 341 (376)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGG
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccc
Confidence 77777777666 78999999999999999999988 688775433 34555555556788999999998 8766432
Q ss_pred CCCCeEEEEecCCCH-HHHHHHHHHHHHHHH
Q 009181 471 QRPNSIHICVTLQHV-AVVDVFLRDLRESVE 500 (541)
Q Consensus 471 ~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~ 500 (541)
..++++|++++..++ +++++++++|+++++
T Consensus 342 ~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 342 MKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp GTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 234789999986654 999999999999875
No 41
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.96 E-value=1e-28 Score=255.09 Aligned_cols=311 Identities=14% Similarity=0.101 Sum_probs=224.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCC----CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCc--cchH
Q 009181 166 FQSVARFEAEVIAMTAALLGNK----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA--HSAY 239 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~----~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~--h~s~ 239 (541)
.|.......+++++++++++.. +++ + ++|+|||+|+.++++++... .++| ++|++++.. |.++
T Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----v--~~~~g~t~al~~~~~~~~~~--~~~g---d~vlv~~~~~~~~~~ 101 (385)
T 2bkw_A 33 SPEFVSIFQRVLKNTRAVFKSAAASKSQP----F--VLAGSGTLGWDIFASNFILS--KAPN---KNVLVVSTGTFSDRF 101 (385)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCGGGTCEE----E--EEESCTTHHHHHHHHHHSCT--TCSC---CEEEEECSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCCce----E--EEcCchHHHHHHHHHHHhcc--CCCC---CeEEEEcCCcchHHH
Confidence 4444455566788888888764 232 5 89999999999999987410 0256 888777543 3334
Q ss_pred HHHHhhcCCeEEEeeC-CCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHc--CCEEEEeCCcccc
Q 009181 240 DKAAQYFNIKLWRVPV-DKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGF 315 (541)
Q Consensus 240 ~ka~~~~G~~v~~v~~-~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~--~i~lhvD~a~gg~ 315 (541)
..+++..|++++.+|+ ++++.+|+++|++++++ ++++|++++++||+|.+.|+++|.++|++| |+++|+|++|+.+
T Consensus 102 ~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~ 181 (385)
T 2bkw_A 102 ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIG 181 (385)
T ss_dssp HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccC
Confidence 5778889999999999 88899999999999987 899999999999999999999999999999 9999999998743
Q ss_pred hhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccc----cccccCCCc---------c--
Q 009181 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV----AVTEWSGGL---------Y-- 380 (541)
Q Consensus 316 ~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~----~~~~~~~~~---------~-- 380 (541)
.. +++....++|+++.++||++++|.|+|+++.+++.+.+.... ....|.+.. +
T Consensus 182 ~~-----------~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (385)
T 2bkw_A 182 CE-----------EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEA 250 (385)
T ss_dssp TS-----------CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHT
T ss_pred Cc-----------cccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhc
Confidence 32 233344578999999999888899999877765432201100 000111000 0
Q ss_pred CCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-hcCCCeEEecCC-----CeeEEEEecCCCCHH
Q 009181 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGI-KEIPELFIIGRP-----DMTIVAFGSDVVDIF 454 (541)
Q Consensus 381 ~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L-~~~~~~~v~~~~-----~~~~v~f~~~~~~~~ 454 (541)
......++.....++++.++++.+...++++..++..++++++.+.| +++ ++++..+. ..++++|..++ ..
T Consensus 251 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~ 327 (385)
T 2bkw_A 251 GKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD--PP 327 (385)
T ss_dssp TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC--HH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC--HH
Confidence 00000122222234456667776666668899999999999999999 888 88887531 36788888764 77
Q ss_pred HHHHHHHhCCceeccCC----CCCeEEEE-ecC---CCH-HHHHHHHHHHHHHHHH
Q 009181 455 EVNDIMSSKGWHLNPLQ----RPNSIHIC-VTL---QHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 455 ~l~~~l~~~G~~~~~~~----~~~~iRi~-~~~---~~~-e~id~~i~~L~~~~~~ 501 (541)
++.+.|.++|+.+.... .++++|++ ++. .++ +|+++++++|++++++
T Consensus 328 ~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 328 DVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp HHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 89999999998765421 24789999 652 234 9999999999988654
No 42
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=5.6e-28 Score=247.54 Aligned_cols=305 Identities=18% Similarity=0.164 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHHhCCCCC-CCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEec-CCccch-HHHHHhhcC
Q 009181 171 RFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSA-YDKAAQYFN 247 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~-~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~-~~~h~s-~~ka~~~~G 247 (541)
....++++++++++|.+.. + ++ ++|+|||+|+..++++++. +| ++|++. .+.|++ +..+++..|
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~---~v--~~~~g~t~a~~~~~~~~~~-----~g---d~vi~~~~~~~~~~~~~~~~~~g 103 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYT---SV--LLQGSGSYAVEAVLGSALG-----PQ---DKVLIVSNGAYGARMVEMAGLMG 103 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEE---EE--EEESCHHHHHHHHHHHSCC-----TT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCcCc---EE--EEecChHHHHHHHHHHhcC-----CC---CeEEEEeCCCccHHHHHHHHHhC
Confidence 4455688899999994321 1 24 8999999999999998852 45 777655 477876 677888899
Q ss_pred CeEEEeeCCCCCccCHHHHHHhhcc--CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCC
Q 009181 248 IKLWRVPVDKEFRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY 325 (541)
Q Consensus 248 ~~v~~v~~~~~~~~d~~~Le~~i~~--~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~ 325 (541)
++++.+|+++++.+|+++|++++++ ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..+
T Consensus 104 ~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~------- 176 (366)
T 1m32_A 104 IAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP------- 176 (366)
T ss_dssp CCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC-------
T ss_pred CceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC-------
Confidence 9999999988889999999999987 4789999999999999999999999999999999999999744332
Q ss_pred CCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCc---c----CC-CcccCCCCCchHHHH
Q 009181 326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL---Y----VS-PTVAGSRPGGLIAGA 397 (541)
Q Consensus 326 ~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~---~----~~-~~~~gsr~~~~~a~~ 397 (541)
++....++|+++.++||++++|.|+|+++.+++ +..........|.... + .+ ....++.+...++++
T Consensus 177 ----~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 251 (366)
T 1m32_A 177 ----MDIAALHIDYLISSANKCIQGVPGFAFVIAREQ-KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAF 251 (366)
T ss_dssp ----CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHH-HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred ----ccccccCccEEEecCcccccCCCceEEEEECHH-HHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHH
Confidence 333345689999999999789999998887754 2222111100110000 0 00 000112222234456
Q ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHHHHHHhhcCCCeEEecCC--Ce-eEEEEecC---CCCHHHHHHHHHhCCceeccC
Q 009181 398 WAALMSLGQEG-YLENTKAIMEVSESIQKGIKEIPELFIIGRP--DM-TIVAFGSD---VVDIFEVNDIMSSKGWHLNPL 470 (541)
Q Consensus 398 ~~al~~lg~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~--~~-~~v~f~~~---~~~~~~l~~~l~~~G~~~~~~ 470 (541)
.++++.+...| +++..++..++++++.+.|+++ ++++..++ .. .++++..+ +.+..++.+.|.++|+.+...
T Consensus 252 ~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 330 (366)
T 1m32_A 252 AQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPG 330 (366)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEEC
T ss_pred HHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECC
Confidence 67777666555 8889999999999999999988 88776542 23 47888876 347889999999999776532
Q ss_pred C--CCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 471 Q--RPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 471 ~--~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
. .++++|++++..++ +++++++++|++++++
T Consensus 331 ~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 331 KVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp CCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2 35789999998765 9999999999988643
No 43
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=2.4e-28 Score=251.19 Aligned_cols=295 Identities=14% Similarity=0.125 Sum_probs=224.1
Q ss_pred HHHHHHHHHH-HHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCC
Q 009181 170 ARFEAEVIAM-TAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI 248 (541)
Q Consensus 170 ~~~e~ev~~~-la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~ 248 (541)
.....+++++ +++++|.+ . + ++|+|+|+|+..+++++.. +| ++|+++.++|+++..+++..|+
T Consensus 52 ~~~~~~l~~~~la~~~~~~--~----v--~~~~g~t~a~~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~~g~ 115 (371)
T 2e7j_A 52 TPPIHDFIHNQLPKFLGCD--V----A--RVTNGAREAKFAVMHSLAK-----KD---AWVVMDENCHYSSYVAAERAGL 115 (371)
T ss_dssp -CCHHHHHHTHHHHHTTSS--E----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEETTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCC--E----E--EEeCChHHHHHHHHHHHhC-----CC---CEEEEccCcchHHHHHHHHcCC
Confidence 3445567779 99999987 4 5 8999999999999999842 56 8999999999999999999999
Q ss_pred eEEEee--CCCCCccCHHHHHHhhc-----cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhh
Q 009181 249 KLWRVP--VDKEFRADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (541)
Q Consensus 249 ~v~~v~--~~~~~~~d~~~Le~~i~-----~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~ 321 (541)
+++.+| +++++.+|+++|+++++ +++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..|
T Consensus 116 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~--- 192 (371)
T 2e7j_A 116 NIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP--- 192 (371)
T ss_dssp EEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBC---
T ss_pred eEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCC---
Confidence 999999 88789999999999998 78999999999999999999999999999999999999999876542
Q ss_pred hcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccc-ccccccccCCCccCCCcccCCCCCchHHHHHHH
Q 009181 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA 400 (541)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~a 400 (541)
++....++|+++.++||++++|.++|+++.+++ +... ...... ++........++......+++.++
T Consensus 193 --------~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~ 260 (371)
T 2e7j_A 193 --------VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEK---YKNKEVELLGCTARGATIITLMAS 260 (371)
T ss_dssp --------CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSS---CTTSBGGGTTCCCCSHHHHHHHHH
T ss_pred --------CChhhcCCCEEEecCCcCCCCCCCcEEEEEech-hhhhhcccccc---CcccccccccCCcCHHHHHHHHHH
Confidence 222233578999999998788888998877654 3222 111111 000000000122222224455556
Q ss_pred HHHHhHHHHHHHHHHH--HHHHHHHHHHhhcCCCeEEecCC--CeeEEEEecCCCCHHHHHHHHHhCCceecc----C--
Q 009181 401 LMSLGQEGYLENTKAI--MEVSESIQKGIKEIPELFIIGRP--DMTIVAFGSDVVDIFEVNDIMSSKGWHLNP----L-- 470 (541)
Q Consensus 401 l~~lg~~g~~~~~~~~--~~~a~~l~~~L~~~~~~~v~~~~--~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~----~-- 470 (541)
++.+.. +..++. .++++++.+.|+++ ++++..++ ..+++++..+ +..++.+.|.++|+.+.. .
T Consensus 261 l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~~~~~~~~ 333 (371)
T 2e7j_A 261 FPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--VLYEISKKAKGGRFFLYRELKSRKI 333 (371)
T ss_dssp HHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--HHHHHHHHSSSGGGHHHHHHHHTTE
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC--CHHHHHHHHHHCCEEEEeccccccc
Confidence 654433 667777 88999999999998 89988654 4678888875 667888899888876543 1
Q ss_pred -CC-CCeEE-EEecCC--CHHHHHHHHHHHHHHHHHH
Q 009181 471 -QR-PNSIH-ICVTLQ--HVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 471 -~~-~~~iR-i~~~~~--~~e~id~~i~~L~~~~~~l 502 (541)
+. ++++| ++++.. +.+++++++++|+++++++
T Consensus 334 ~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 334 HGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp ECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 11 57899 999975 5599999999999998753
No 44
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.96 E-value=2e-27 Score=246.31 Aligned_cols=307 Identities=13% Similarity=0.134 Sum_probs=227.9
Q ss_pred CCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch
Q 009181 161 LHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (541)
Q Consensus 161 ~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s 238 (541)
.+|...++..++++++.+++.+.+|.+ +++ + ++|+|||+|+..+++++.+ +| ++|+++.++|++
T Consensus 61 ~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~~~~~~ 126 (388)
T 1j32_A 61 TRYGPAAGEPRLREAIAQKLQRDNGLCYGADN----I--LVTNGGKQSIFNLMLAMIE-----PG---DEVIIPAPFWVS 126 (388)
T ss_dssp CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEESSCCTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEEcCCCChh
Confidence 344445567888998999999988864 333 5 8999999999999998842 56 899999999999
Q ss_pred HHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcc
Q 009181 239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~g 313 (541)
+..+++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|.++|++||+++|+|++|+
T Consensus 127 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~ 206 (388)
T 1j32_A 127 YPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYE 206 (388)
T ss_dssp HHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccch
Confidence 9999999999999999975 6789999999999999999999999999999954 8999999999999999999998
Q ss_pred cchhhhhhhcCCCCCCC-CcC--CCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCC
Q 009181 314 GFVLPFAKKLGYPIPPF-DFS--VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388 (541)
Q Consensus 314 g~~~~f~~~~g~~~p~~-~~~--~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 388 (541)
++... |...+.+ .+. ..+.+++..++||+ +++.| +|+++.++ ++.......... +
T Consensus 207 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~sK~-~~~~G~r~G~~~~~~-~~~~~l~~~~~~---~---------- 266 (388)
T 1j32_A 207 KILYD-----DAQHLSIGAASPEAYERSVVCSGFAKT-YAMTGWRVGFLAGPV-PLVKAATKIQGH---S---------- 266 (388)
T ss_dssp TCBCT-----TCCCCCGGGSCHHHHHTEEEEEESTTT-TTCTTTCCEEEECCH-HHHHHHHHHHHT---T----------
T ss_pred hcccC-----CCCCCCHHHccccccCCEEEEeechhc-cCCcccceEEEEeCH-HHHHHHHHHHhh---c----------
Confidence 76541 1101111 111 14578999999999 56666 89876543 333221111000 0
Q ss_pred CCCchHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC--CCCHHHHHHHHHh-C
Q 009181 389 RPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD--VVDIFEVNDIMSS-K 463 (541)
Q Consensus 389 r~~~~~a~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~--~~~~~~l~~~l~~-~ 463 (541)
..+....+++++...+ +.+.+++..++..++++++.+.|+++|++++..+....++++... +.+..++.+.|.+ +
T Consensus 267 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (388)
T 1j32_A 267 TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQH 346 (388)
T ss_dssp TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhC
Confidence 0011123445444444 456688889999999999999999988988775544444444444 3477889999886 6
Q ss_pred Cceecc---CCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 464 GWHLNP---LQRPNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 464 G~~~~~---~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
|+.+.. ++.++++|+|++ .+.+++++++++|+++++++
T Consensus 347 gi~v~~g~~~~~~~~iRis~~-~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 347 QVATVPGAAFGADDCIRLSYA-TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp CEECEEGGGGTCTTBEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeChhhhCCCCcEEEEec-CCHHHHHHHHHHHHHHHHHh
Confidence 977643 333578999997 35699999999999998764
No 45
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.96 E-value=7.1e-27 Score=245.74 Aligned_cols=316 Identities=20% Similarity=0.193 Sum_probs=221.5
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHh---hcC---------C-CCCeEEec
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRG---------I-TRPEMIIP 232 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~---~~G---------i-~~~~vi~~ 232 (541)
.++..+...++++++++++|.++++ + ++|+|+|+|+.++++++...... ++| . ..++|+++
T Consensus 56 ~~~~~~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~ 129 (432)
T 3a9z_A 56 GRKAKDIINTARASLAKMIGGKPQD----I--IFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITC 129 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGG----E--EEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCe----E--EEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEe
Confidence 3456677788999999999997664 5 99999999999999998531110 133 0 01478888
Q ss_pred CCccchHHHHH----hhcCCeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcC----
Q 009181 233 VSAHSAYDKAA----QYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG---- 303 (541)
Q Consensus 233 ~~~h~s~~ka~----~~~G~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~---- 303 (541)
..+|+++..++ +..|++++.+|+++ ++.+|+++|+++++++|++|++++|+||+|.+.|+++|.++|++++
T Consensus 130 ~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~ 209 (432)
T 3a9z_A 130 TVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRA 209 (432)
T ss_dssp TTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccc
Confidence 88899876554 34699999999986 8899999999999999999999999999999999999999999999
Q ss_pred ------CEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCC
Q 009181 304 ------TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG 377 (541)
Q Consensus 304 ------i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~ 377 (541)
+++|+|++|+.+.. +++....++|+++.++||+ ++|. +|+++.+++...... .+.+.+
T Consensus 210 ~~~~~~~~livDea~~~~~~-----------~~~~~~~~~d~~~~s~~K~-~g~~-~G~~~~~~~~~~~~~---~~~~~~ 273 (432)
T 3a9z_A 210 ASGLPRVLVHTDAAQALGKR-----------RVDVEDLGVDFLTIVGHKF-YGPR-IGALYVRGVGKLTPL---YPMLFG 273 (432)
T ss_dssp HHTCCCCEEEEECTTTTTTS-----------CCCHHHHCCSEEEEEGGGT-TCCS-CEEEEETTBTTTBCC---CCSCCS
T ss_pred cccCCceEEEEEchhhhCCc-----------ccChhhcCCCEEEEehhHh-cCCc-ceEEEEccccccCCc---Cceeec
Confidence 99999999975432 2333334678999999998 5776 998887654312111 111111
Q ss_pred CccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEE--ecC-----CCeeEEEEecCC
Q 009181 378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFI--IGR-----PDMTIVAFGSDV 450 (541)
Q Consensus 378 ~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v--~~~-----~~~~~v~f~~~~ 450 (541)
+........|+.....++++.++++.+ .+++++..++..++++++.+.|++++++++ .++ ...++++|.+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
T 3a9z_A 274 GGQERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQG 352 (432)
T ss_dssp SCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCC
Confidence 111111112332223344555566544 357889999999999999999988655443 333 123467777654
Q ss_pred --CCHHHHHHHHH----hCCceecc------------CCC-----CCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 451 --VDIFEVNDIMS----SKGWHLNP------------LQR-----PNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 451 --~~~~~l~~~l~----~~G~~~~~------------~~~-----~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
.+..++.+.+. +.|..+.. .+. ++++|++++..++ +|+++++++|+++++++++
T Consensus 353 ~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 353 SQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp TTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 24555555442 22322211 122 2789999997765 9999999999999988764
No 46
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=1.1e-26 Score=242.95 Aligned_cols=302 Identities=15% Similarity=0.160 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHH-hhcCCCCCe-EEecCCccchHHHHH----h
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR-NKRGITRPE-MIIPVSAHSAYDKAA----Q 244 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~-~~~Gi~~~~-vi~~~~~h~s~~ka~----~ 244 (541)
+...++++++++++|.++++ + ++|+|+++++..++++++.... .++| ++ |+++...|+++..++ +
T Consensus 71 ~~~~~l~~~la~~~g~~~~~----v--~~~~g~t~al~~al~~~~~~~~~~~~g---d~vii~~~~~~~~~~~~~~~~~~ 141 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDGE----V--VVTDTTSINLFKVLSAALRVQATRSPE---RRVIVTETSNFPTDLYIAEGLAD 141 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTTS----E--EECSCHHHHHHHHHHHHHHHHHHHSTT---CCEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccc----E--EEeCChhHHHHHHHHhhcccccccCCC---CcEEEEcCCCCCchHHHHHHHHH
Confidence 44556888999999997654 5 8999999999999988763211 1245 65 667777999866543 3
Q ss_pred hc--CCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhh
Q 009181 245 YF--NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 245 ~~--G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~ 322 (541)
.. |++++.+|+ +++|+++|++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..+
T Consensus 142 ~~~~g~~~~~v~~-------~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---- 210 (416)
T 1qz9_A 142 MLQQGYTLRLVDS-------PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---- 210 (416)
T ss_dssp HHCSSCEEEEESS-------GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC----
T ss_pred HhcCCceEEEeCc-------HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC----
Confidence 34 999999986 78999999999999999999999999999999999999999999999999743221
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCc-eEEEEecccccccccccccccCCCc--------c-----CCCcccCC
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGT-SVVLYRNREIRKHQFVAVTEWSGGL--------Y-----VSPTVAGS 388 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~-g~ll~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~gs 388 (541)
++....++|++++++||+++++.++ |+++.+++ +..........|.+.. + ......|+
T Consensus 211 -------~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~-~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 282 (416)
T 1qz9_A 211 -------VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ-LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGT 282 (416)
T ss_dssp -------CCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT-TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSC
T ss_pred -------CChhhcCCCEEEecCcccCCCCCCCeEEEEECHH-HHhccCCCccccCccccccCCCCccCCCcchHHhcCCC
Confidence 2222336799999999997778887 98777654 3221111111121110 0 00011223
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC-C--CeEEecCC----CeeEEEEecCCCCHHHHHHHHH
Q 009181 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI-P--ELFIIGRP----DMTIVAFGSDVVDIFEVNDIMS 461 (541)
Q Consensus 389 r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~--~~~v~~~~----~~~~v~f~~~~~~~~~l~~~l~ 461 (541)
.....++++.++++.+..+++++..++..++++++.+.|+++ | ++++..++ ..+++++..++ ..++.+.|.
T Consensus 283 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~ 360 (416)
T 1qz9_A 283 QPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--GYAVIQALI 360 (416)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--HHHHHHHHH
Confidence 333345566777777666678899999999999999999985 7 89887653 35778888763 778999999
Q ss_pred hCCceeccCCCCCeEEEEecC-C-CHHHHHHHHHHHHHHHHHHH
Q 009181 462 SKGWHLNPLQRPNSIHICVTL-Q-HVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 462 ~~G~~~~~~~~~~~iRi~~~~-~-~~e~id~~i~~L~~~~~~l~ 503 (541)
++|+.+.. ..++++|++++. . +.++++++++.|++++++..
T Consensus 361 ~~gi~~~~-~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 361 DRGVIGDY-REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp TTTEECEE-ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hCCcEecc-CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 99976542 235789999973 3 45999999999999987644
No 47
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.95 E-value=7.5e-27 Score=241.81 Aligned_cols=324 Identities=13% Similarity=0.108 Sum_probs=234.0
Q ss_pred HHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCC--CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC
Q 009181 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (541)
Q Consensus 147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~--~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi 224 (541)
.+.+++...+.....++... ..++++++.+++++.+|. ++++ + ++|+|+|+|+..+++++.. +|
T Consensus 44 ~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~----i--~~~~g~~~a~~~~~~~l~~-----~g- 109 (391)
T 3dzz_A 44 EIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKEDW----C--VFASGVVPAISAMVRQFTS-----PG- 109 (391)
T ss_dssp HHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGG----E--EEESCHHHHHHHHHHHHSC-----TT-
T ss_pred HHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHH----E--EECCCHHHHHHHHHHHhCC-----CC-
Confidence 34444444444333333322 467888899999999994 4444 6 8999999999999998742 56
Q ss_pred CCCeEEecCCccchHHHHHhhcCCeEEEeeCC---CCCccCHHHHHHhhc-cCceEEEeecCCCCCccc---cCHHHHHH
Q 009181 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD---KEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGII---DPIQELGE 297 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~---~~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~i---d~i~~I~~ 297 (541)
++|+++.++|+++..+++..|++++.+|++ .++.+|+++|+++++ +++++|++++|+||+|.+ +++++|++
T Consensus 110 --d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~ 187 (391)
T 3dzz_A 110 --DQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAE 187 (391)
T ss_dssp --CEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHH
T ss_pred --CeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHH
Confidence 899999999999999999999999999985 245699999999998 789999999999999999 67999999
Q ss_pred HHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCC---CCceEEEeCCCCCCC-CCCCceEEEEeccccccccccccc
Q 009181 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV---QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVT 373 (541)
Q Consensus 298 la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~---~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~ 373 (541)
+|++||+++|+|++|+++... |.....+.... .+..+++.++||++. ++.++|+++.+++++.........
T Consensus 188 ~~~~~~~~li~De~~~~~~~~-----g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 262 (391)
T 3dzz_A 188 LCAKHQVLLISDEIHGDLVLT-----DEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFF 262 (391)
T ss_dssp HHHHTTCEEEEECTTTTCBCS-----SCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHCCCEEEEecccccccCC-----CCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHH
Confidence 999999999999999876541 11011111111 223488999999942 445689877765655433211100
Q ss_pred ccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecCC--
Q 009181 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSDV-- 450 (541)
Q Consensus 374 ~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~~-- 450 (541)
.+. . .+-+....+++.+++.. +.+.+++..++..++++++.+.|++ +|++++..+....++++.++.
T Consensus 263 ~~~--~-------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (391)
T 3dzz_A 263 LAG--I-------GEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALG 332 (391)
T ss_dssp HHT--C-------SSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGC
T ss_pred hhc--c-------CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcC
Confidence 000 0 00011113344445543 4567889999999999999999999 899998765555555566653
Q ss_pred CCHHHHHHHHH-hCCceecc---CCC--CCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 451 VDIFEVNDIMS-SKGWHLNP---LQR--PNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 451 ~~~~~l~~~l~-~~G~~~~~---~~~--~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
.+..++.+.|. ++|+.+.. ++. ++++|++++ .+.+++++++++|+++++++
T Consensus 333 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 333 MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC-SCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHHHh
Confidence 47889999995 88987643 222 378999998 35699999999999998764
No 48
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.95 E-value=6.1e-27 Score=240.76 Aligned_cols=282 Identities=15% Similarity=0.171 Sum_probs=216.9
Q ss_pred HHHHHHHHHhCC-CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEe
Q 009181 175 EVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (541)
Q Consensus 175 ev~~~la~l~g~-~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v 253 (541)
++++++++++|. ++++ + ++|+|||+|+..+++++.+ +| ++|+++.++|+++...++..|++++.+
T Consensus 71 ~l~~~la~~~g~~~~~~----i--~~~~g~t~a~~~~~~~~~~-----~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~v 136 (367)
T 3euc_A 71 ALRAKLKEVMQVPAGME----V--LLGNGSDEIISMLALAAAR-----PG---AKVMAPVPGFVMYAMSAQFAGLEFVGV 136 (367)
T ss_dssp HHHHHHHHHHTCCTTCE----E--EEEEHHHHHHHHHHHHTCC-----TT---CEEEEEESCSCCSCHHHHTTTCEEEEE
T ss_pred HHHHHHHHHhCCCCcce----E--EEcCCHHHHHHHHHHHHcC-----CC---CEEEEcCCCHHHHHHHHHHcCCeEEEe
Confidence 466688899998 4443 5 8999999999999998742 56 899999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccC---HHHHHHHHHHc--CCEEEEeCCcccchhhhhhhcCCCC
Q 009181 254 PVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP---IQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPI 327 (541)
Q Consensus 254 ~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~---i~~I~~la~~~--~i~lhvD~a~gg~~~~f~~~~g~~~ 327 (541)
|+++++.+|+++|++++++ +|++|++++|+||+|.+.| +++|+++|++| |+++|+|++|+++... +. .
T Consensus 137 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~-----~~-~ 210 (367)
T 3euc_A 137 PLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQE-----SW-M 210 (367)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSC-----CS-G
T ss_pred cCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhccc-----ch-H
Confidence 9999999999999999998 8999999999999999954 77888889999 9999999999875420 10 1
Q ss_pred CCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-H
Q 009181 328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-Q 406 (541)
Q Consensus 328 p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg-~ 406 (541)
......+.+++..++||++.++.++|+++. ++++..........|. ....++.++...+. .
T Consensus 211 --~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~a~~~~l~~~ 272 (367)
T 3euc_A 211 --SRLTDFGNLLVMRTVSKLGLAGIRLGYVAG-DPQWLEQLDKVRPPYN---------------VNVLTEATALFALEHV 272 (367)
T ss_dssp --GGGGTCTTEEEEEECCCTTSCSCCEEEEEE-CHHHHHHHGGGCCSSC---------------CCHHHHHHHHHHHTTH
T ss_pred --HHHhhCCCEEEEecchhhcccccCceeeee-CHHHHHHHHHhCCCCC---------------CCHHHHHHHHHHhcCH
Confidence 112334567788889999666667898776 4444332211111111 11224444444443 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCC-----CCCeEEEEec
Q 009181 407 EGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQ-----RPNSIHICVT 481 (541)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~-----~~~~iRi~~~ 481 (541)
+++++..++..++++++.+.|+++|++++. ++...++++.++ +..++.+.|.++|+.+.... .++++|++++
T Consensus 273 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~--~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~ 349 (367)
T 3euc_A 273 AVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP--DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS 349 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC
Confidence 567899999999999999999999999854 556677777776 78899999999998765422 2479999987
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 009181 482 LQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 482 ~~~~e~id~~i~~L~~~~ 499 (541)
+.++++++++.|++++
T Consensus 350 --~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 350 --TPEENAQFLEAFAASL 365 (367)
T ss_dssp --CHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 5699999999999875
No 49
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.95 E-value=1.2e-26 Score=239.77 Aligned_cols=295 Identities=18% Similarity=0.169 Sum_probs=214.2
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.++++++.++++ + ++|+|||+|+..+++++.. +| ++|+++.++|+++..+++..|++++.+|
T Consensus 65 ~l~~~la~~~~~~~~~----v--~~~~g~~~a~~~~~~~~~~-----~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~v~ 130 (381)
T 1v2d_A 65 ALREALAEEFAVEPES----V--VVTSGATEALYVLLQSLVG-----PG---DEVVVLEPFFDVYLPDAFLAGAKARLVR 130 (381)
T ss_dssp HHHHHHHHHHTSCGGG----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhcCCChhh----E--EEcCChHHHHHHHHHHhCC-----CC---CEEEEcCCCchhHHHHHHHcCCEEEEEe
Confidence 4555778889988665 5 9999999999999998842 56 8999999999999999999999999999
Q ss_pred CC---CCCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 255 VD---KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 255 ~~---~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
++ +++.+|+++|++++++++++|++++|+||+|.+.| +++|.++|++||+++|+|++|+++.. ...+ .+
T Consensus 131 ~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~---g~~~--~~ 205 (381)
T 1v2d_A 131 LDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY---GERP--RR 205 (381)
T ss_dssp CEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS---SSCC--CC
T ss_pred CCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc---CCCC--CC
Confidence 97 57889999999999989999999999999999976 89999999999999999999987643 1000 00
Q ss_pred CCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-
Q 009181 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG- 405 (541)
Q Consensus 329 ~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg- 405 (541)
.... ..++|++..++||+ +++.| +|+++.+ +++......... +. ..+.+....+++.++++...
T Consensus 206 ~~~~-~~~~~~~~~s~sK~-~~~~G~r~G~~~~~-~~~~~~~~~~~~-~~---------~~~~~~~~~~a~~~~l~~~~~ 272 (381)
T 1v2d_A 206 LREF-APERTFTVGSAGKR-LEATGYRVGWIVGP-KEFMPRLAGMRQ-WT---------SFSAPTPLQAGVAEALKLARR 272 (381)
T ss_dssp HHHH-CTTTEEEEEEHHHH-TTCGGGCCEEEECC-TTTHHHHHHHHH-HH---------TSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCEEEEeechhh-cCCcccceEEEEeC-HHHHHHHHHHHh-hc---------ccCCCcHHHHHHHHHHhCccc
Confidence 0111 45789999999998 45555 8987664 444332111000 00 00011111223333443221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceecc---CC----CCCeEEE
Q 009181 406 QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP---LQ----RPNSIHI 478 (541)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~---~~----~~~~iRi 478 (541)
.+++++..+++.++++++.+.|++. ++++..+....++++..++.+ +.+.+.++|+.+.. +. .++++|+
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi 348 (381)
T 1v2d_A 273 EGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGWD---AFRLVEEARVALIPASAFYLEDPPKDLFRF 348 (381)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTCC---HHHHHHHTCEECEEGGGGCSSSCCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChHh---HHHHHHhCCEEEecchHhCCCCCCCCEEEE
Confidence 4567888999999999999999985 888876554567777776543 77778889977643 21 3578999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHHHHcCC
Q 009181 479 CVTLQHVAVVDVFLRDLRESVETVKQNP 506 (541)
Q Consensus 479 ~~~~~~~e~id~~i~~L~~~~~~l~~~~ 506 (541)
|++. +.++++++++.|++++++.++..
T Consensus 349 ~~~~-~~~~i~~~~~~l~~~l~~~r~~~ 375 (381)
T 1v2d_A 349 AFCK-TEEELHLALERLGRVVNSPREAE 375 (381)
T ss_dssp ECCS-CHHHHHHHHHHHHHHC-------
T ss_pred EeCC-CHHHHHHHHHHHHHHHhhccccc
Confidence 9987 66999999999999988776543
No 50
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=1.2e-26 Score=240.77 Aligned_cols=315 Identities=12% Similarity=0.116 Sum_probs=229.7
Q ss_pred HHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC
Q 009181 148 INEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (541)
Q Consensus 148 ~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~ 225 (541)
+.+++...+.....+|...++..++++++.+++.+.+|.+ +++ + ++|+|||+|+..+++++.+ +|
T Consensus 59 v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~----v--~~~~g~t~al~~~~~~l~~-----~g-- 125 (389)
T 1o4s_A 59 VVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQ----V--VVTNGAKQALFNAFMALLD-----PG-- 125 (389)
T ss_dssp HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT--
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH----E--EEecCHHHHHHHHHHHhCC-----CC--
Confidence 3444444333322344444567788888888888888874 443 5 8999999999999998742 56
Q ss_pred CCeEEecCCccchHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHH
Q 009181 226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELAL 300 (541)
Q Consensus 226 ~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~ 300 (541)
++|+++.++|+++..+++..|++++.+|.++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|+++|+
T Consensus 126 -d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 204 (389)
T 1o4s_A 126 -DEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAK 204 (389)
T ss_dssp -CEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred -CEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999975 5789999999999999999999999999999977 999999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcC-CCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCC
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSG 377 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~-~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~ 377 (541)
+||+++++|++|+++... |...+...+. ..+.|+++.++||+ +++.| +|+++.+ +++..........+.
T Consensus 205 ~~~~~li~Dea~~~~~~~-----g~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~l~~~-~~~~~~l~~~~~~~~- 276 (389)
T 1o4s_A 205 KRNFYIISDEVYDSLVYT-----DEFTSILDVSEGFDRIVYINGFSKS-HSMTGWRVGYLISS-EKVATAVSKIQSHTT- 276 (389)
T ss_dssp HHTCEEEEECTTTTSBCS-----SCCCCHHHHCSSSTTEEEEEESTTT-TTCGGGCCEEEECC-HHHHHHHHHHHHHHT-
T ss_pred HcCCEEEEEccccccccC-----CCCCCHhhcCCCCCcEEEEeechhh-cCCcccceEEEEeC-HHHHHHHHHHhhhcc-
Confidence 999999999999876541 1000101111 25689999999999 45555 8987764 333322111111110
Q ss_pred CccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHH
Q 009181 378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVN 457 (541)
Q Consensus 378 ~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~ 457 (541)
.+....+++++...+.. ++++..+++.++++++.+.|+++ ++++..+....++++..+ .+..++.
T Consensus 277 ------------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~~~l~ 341 (389)
T 1o4s_A 277 ------------SCINTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR-GDDVKFC 341 (389)
T ss_dssp ------------CSCCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS-SCHHHHH
T ss_pred ------------cCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC-CCHHHHH
Confidence 01112355555555543 27788889999999999999988 887765444445566665 5678899
Q ss_pred HHHH-hCCceecc---CCCCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 458 DIMS-SKGWHLNP---LQRPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 458 ~~l~-~~G~~~~~---~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
+.|. ++|+.+.. ++.++++|++++. +.+++++++++|+++++
T Consensus 342 ~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 342 ERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLTEALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 9987 88976643 3335799999985 66999999999988763
No 51
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=238.86 Aligned_cols=305 Identities=14% Similarity=0.051 Sum_probs=228.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEE-cCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch--HHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA 242 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~-t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s--~~ka 242 (541)
++...++.+++++.+++++|++++. ++ +| |+|||+++.+++..+.. +++| +++++....|++ +.+.
T Consensus 53 ~~~~~~~~~~ar~~la~ll~~~~~~---ev--if~t~~~T~a~n~a~~~l~~---~~~G---d~v~~~~~g~~~~~~~~~ 121 (377)
T 3e77_A 53 SSDFAKIINNTENLVRELLAVPDNY---KV--IFLQGGGCGQFSAVPLNLIG---LKAG---RCADYVVTGAWSAKAAEE 121 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTE---EE--EEESSHHHHHHHHHHHHHGG---GSTT---CEEEECCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCC---eE--EEEcCchHHHHHHHHHhccC---CCCC---CeEEEEECCHHHHHHHHH
Confidence 4567778888999999999997643 25 77 68999999999987742 2235 888877777776 3455
Q ss_pred HhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhh
Q 009181 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 243 ~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~ 322 (541)
++..|..++.++++.++..++++++.+++++|++|.+++.+|.+|++.|+ +|+++|+++|||++++.+..
T Consensus 122 a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~----- 191 (377)
T 3e77_A 122 AKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSK----- 191 (377)
T ss_dssp HTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSS-----
T ss_pred HHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCC-----
Confidence 66778888888887777778888888899999999999999999999998 47789999999999765444
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCC-Ccc-CCCcccCCCCCchHHHHHHH
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG-GLY-VSPTVAGSRPGGLIAGAWAA 400 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~gsr~~~~~a~~~~a 400 (541)
++|+...++ +++++|||+ ||+|+|+++++++.+.... ...+.+.. ... ......|+.+-..++++.++
T Consensus 192 ------~id~~~~~~--~~~s~~K~~-gp~G~g~l~~~~~~l~~~~-~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~a 261 (377)
T 3e77_A 192 ------PVDVSKFGV--IFAGAQKNV-GSAGVTVVIVRDDLLGFAL-RECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLV 261 (377)
T ss_dssp ------CCCGGGCSE--EEEEGGGTT-SCTTCEEEEEETTSCSCCC-TTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHH
T ss_pred ------CCchhhcCE--EEEeccccc-CCCccEEEEEcHHHHhhcc-CCCCchhhHHHHhhcCCCCCCchHHHHHHHHHH
Confidence 466666664 788999996 8999999888766432211 11111110 000 01122344444567888899
Q ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHHHhhcCCCeEEec-CC--C-eeEEEEecCCCCH-----HHHHHHHHhCCceecc-
Q 009181 401 LMSLGQE-GYLENTKAIMEVSESIQKGIKEIPELFIIG-RP--D-MTIVAFGSDVVDI-----FEVNDIMSSKGWHLNP- 469 (541)
Q Consensus 401 l~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~--~-~~~v~f~~~~~~~-----~~l~~~l~~~G~~~~~- 469 (541)
++++... |++++.++..++++++++.|+++|++++.. ++ . ..+++|..++.+. ..+.+.+.++|+.+..
T Consensus 262 l~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g 341 (377)
T 3e77_A 262 LEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKG 341 (377)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCC
Confidence 9988888 899999999999999999999999998643 12 1 3479999886432 3566777788976532
Q ss_pred CCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 470 LQRPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 470 ~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
....+.+|+|+..+++ +|||++++.|+++.++
T Consensus 342 ~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 342 HRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp CTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2334679999988877 9999999999999865
No 52
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=4.8e-27 Score=240.05 Aligned_cols=311 Identities=13% Similarity=0.107 Sum_probs=221.7
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC
Q 009181 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~ 225 (541)
..+.+++...+.. +....+..++..++++++++++|.++++ + ++|+|||+|+..+++++++ +|
T Consensus 28 ~~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~~~----v--~~~~g~t~a~~~~~~~~~~-----~g-- 90 (359)
T 1svv_A 28 PKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPDAD----V--HFISGGTQTNLIACSLALR-----PW-- 90 (359)
T ss_dssp HHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTTSE----E--EEESCHHHHHHHHHHHHCC-----TT--
T ss_pred HHHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCCcc----E--EEeCCchHHHHHHHHHHhC-----CC--
Confidence 3444455444432 2223344567788999999999987654 5 8999999999999999853 55
Q ss_pred CCeEEecCCccchHHH--HHhhcCCeEEEeeCCCCCccCHHHHHHhhccC-------ceEEEeecCCCCCccccC---HH
Q 009181 226 RPEMIIPVSAHSAYDK--AAQYFNIKLWRVPVDKEFRADVKAIKKYINRN-------TVLIVGSAPGFPHGIIDP---IQ 293 (541)
Q Consensus 226 ~~~vi~~~~~h~s~~k--a~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~-------t~~vv~~~~~~~~G~id~---i~ 293 (541)
++|+++.+.|+++.. .++..|++++.+|.+ ++.+|+++|+++++++ +++|+++++ ||+|.+.| ++
T Consensus 91 -d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~ 167 (359)
T 1svv_A 91 -EAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELE 167 (359)
T ss_dssp -EEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHH
T ss_pred -CEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHH
Confidence 899999999999988 478889999999986 7889999999999876 899999999 68999988 89
Q ss_pred HHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCC----CCceEEEeCCCCCCCCCCCceEEEEeccccccccc
Q 009181 294 ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV----QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369 (541)
Q Consensus 294 ~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~----~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~ 369 (541)
+|.++|++||+++|+|++|+++.+. ..+ .+... .+.|++++++||+ ++|.|+|+++.+ +++.....
T Consensus 168 ~i~~~~~~~~~~li~De~~~~~~~~---~~~-----~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~-~~~~~~~~ 237 (359)
T 1svv_A 168 DISASCKEHGLYLFLDGARLASALS---SPV-----NDLTLADIARLTDMFYIGATKA-GGMFGEALIILN-DALKPNAR 237 (359)
T ss_dssp HHHHHHHHHTCEEEEECTTHHHHHT---STT-----CCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECS-GGGCTTHH
T ss_pred HHHHHHHHhCCEEEEEccchhhhhc---CCC-----cchhhhhhhhcCCEEEEecccC-CCCCceEEEEEc-ccHHHHHH
Confidence 9999999999999999999665431 111 22221 3469999999999 568888876654 44433211
Q ss_pred ccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC
Q 009181 370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD 449 (541)
Q Consensus 370 ~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~ 449 (541)
... +.++.... .+.....+++ ..+...++++..++..++++++.+.| +.+++++..+...+++++..+
T Consensus 238 ~~~--~~~~~~~~-------~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~ 305 (359)
T 1svv_A 238 HLI--KQRGALMA-------KGWLLGIQFE--VLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE 305 (359)
T ss_dssp HHH--HHTTCCCT-------TTHHHHHHHH--HHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE
T ss_pred HHH--hcCCcccc-------cchhhHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC
Confidence 100 00110000 0111112222 23555677889999999999999999 567888876666666666553
Q ss_pred CCCHHHHHHHHHhC-CceeccC--CCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 450 VVDIFEVNDIMSSK-GWHLNPL--QRPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 450 ~~~~~~l~~~l~~~-G~~~~~~--~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
.++.+.|.++ |+.+... ..++++|++++..++ +++++++++|+++++++
T Consensus 306 ----~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ----NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ----HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ----HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 4788999999 9776221 234689999876554 99999999999887653
No 53
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.95 E-value=4.3e-26 Score=240.02 Aligned_cols=320 Identities=12% Similarity=0.117 Sum_probs=228.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHH--HHHHhhcCCCCC--eEEecCCc
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSR--DYMRNKRGITRP--EMIIPVSA 235 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r--~~~~~~~Gi~~~--~vi~~~~~ 235 (541)
+|....+..++++.+.+++.+.+|.+ +++ + ++|+|||+++.++++++. + +| + +|+++.++
T Consensus 77 ~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~----i--~~t~g~t~al~~~~~~l~~~~-----~g---d~~~Vl~~~p~ 142 (437)
T 3g0t_A 77 IYPNLDGLPELKQEASRFAKLFVNIDIPARA----C--VPTVGSMQGCFVSFLVANRTH-----KN---REYGTLFIDPG 142 (437)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESHHHHHHHHHHHHHTTSC-----TT---CSCCEEEEESC
T ss_pred CCCCCCChHHHHHHHHHHHHHhhCCCCCccc----E--EEeCCHHHHHHHHHHHHhcCC-----CC---CccEEEEeCCC
Confidence 34334455688888888888887765 333 6 899999999999999885 3 55 7 89999999
Q ss_pred cchHHHHHhhcCCeEEEeeCCC-CCccCHHHHHHhh-ccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeC
Q 009181 236 HSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL 310 (541)
Q Consensus 236 h~s~~ka~~~~G~~v~~v~~~~-~~~~d~~~Le~~i-~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~ 310 (541)
|+++..+++..|++++.+|+++ ++.+|+++|++++ ++++++|++++|+||+|.+.+ +++|+++|++||+++|+|+
T Consensus 143 ~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De 222 (437)
T 3g0t_A 143 FNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDL 222 (437)
T ss_dssp CHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEc
Confidence 9999999999999999999964 6689999999999 788999999999999999987 7778999999999999999
Q ss_pred CcccchhhhhhhcCCCC---CC--CCcC-CCCceEEEeCCCCCCC-CCCCceEEEEecccccc-cccccccccCCCcc--
Q 009181 311 CLGGFVLPFAKKLGYPI---PP--FDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRK-HQFVAVTEWSGGLY-- 380 (541)
Q Consensus 311 a~gg~~~~f~~~~g~~~---p~--~~~~-~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~-~~~~~~~~~~~~~~-- 380 (541)
+|+.+... . ..++ |+ ..+. ..+.+++..++||++. .+.++|+++.++ ++.. ..-.....+.++..
T Consensus 223 ~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 297 (437)
T 3g0t_A 223 AYFGMDFR---K-DYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISG-KLYEREYPDLEESFGRLRFGE 297 (437)
T ss_dssp TTTTCCTT---S-CCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECH-HHHHCBCGGGHHHHSCSBHHH
T ss_pred chhhcccC---C-CcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECH-HHhhhhhhcccccccccchhH
Confidence 99876542 1 0001 11 1222 2566788999999943 334489877654 3332 20000000000000
Q ss_pred --CCCcccCCCCCchHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHhhcCCCeEEe------cC-CCeeEEEE
Q 009181 381 --VSPTVAGSRPGGLIAGAWAALMSLGQEG-----YLENTKAIMEVSESIQKGIKEIPELFII------GR-PDMTIVAF 446 (541)
Q Consensus 381 --~~~~~~gsr~~~~~a~~~~al~~lg~~g-----~~~~~~~~~~~a~~l~~~L~~~~~~~v~------~~-~~~~~v~f 446 (541)
......+........+++++...+.... +++..+++.++++++.+.|+++ ++++. .+ ....++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 376 (437)
T 3g0t_A 298 ALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTV 376 (437)
T ss_dssp HHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEE
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEE
Confidence 0000000001111335555555554333 7889999999999999999998 89988 35 55667777
Q ss_pred ecCCCCHHHHHHHHHhCCceeccCCC-----CCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 447 GSDVVDIFEVNDIMSSKGWHLNPLQR-----PNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 447 ~~~~~~~~~l~~~l~~~G~~~~~~~~-----~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
.+++.+..++.+.|.++|+.+..... ++++|+|++..+.+++++++++|++++++
T Consensus 377 ~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 377 GYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp EETTCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 77766889999999999987654321 26799999966669999999999998754
No 54
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.95 E-value=1.4e-25 Score=230.21 Aligned_cols=284 Identities=12% Similarity=0.114 Sum_probs=218.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v 253 (541)
.++++.+++++|.++++ + ++|+|||+++..+++++.+ +| ++|+++.+.|+++...++..|++++.+
T Consensus 70 ~~lr~~la~~~~~~~~~----v--~~~~g~t~a~~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~~g~~~~~v 135 (363)
T 3ffh_A 70 SSLRKEVADFYQLEEEE----L--IFTAGVDELIELLTRVLLD-----TT---TNTVMATPTFVQYRQNALIEGAEVREI 135 (363)
T ss_dssp HHHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHCS-----TT---CEEEEEESSCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhCCChhh----E--EEeCCHHHHHHHHHHHHcc-----CC---CEEEEcCCChHHHHHHHHHcCCEEEEe
Confidence 45777999999987765 6 9999999999999998742 56 899999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHc--CCEEEEeCCcccchhhhhhhcCCCCCCCC
Q 009181 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (541)
Q Consensus 254 ~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~--~i~lhvD~a~gg~~~~f~~~~g~~~p~~~ 331 (541)
|.++++.+|++++++++++++++|++++|+||+|.+.|++++.++++.+ |+++|+|++|+++.. +...+...
T Consensus 136 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~------~~~~~~~~ 209 (363)
T 3ffh_A 136 PLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT------PQPEKHEK 209 (363)
T ss_dssp ECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS------SCCCCCGG
T ss_pred cCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC------ccccCHHH
Confidence 9998899999999999999999999999999999999999999999888 999999999986653 10001111
Q ss_pred c-CCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHH-hHH
Q 009181 332 F-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQE 407 (541)
Q Consensus 332 ~-~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~l-g~~ 407 (541)
. ...+.+++..+++|+ +++.| +|+++. ++++..........| +....+++++...+ ..+
T Consensus 210 ~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~-~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~l~~~~ 272 (363)
T 3ffh_A 210 LVRTYKNLIITRTFSKI-YGLASARVGYGIA-DKEIIRQLNIVRPPF---------------NTTSIGQKLAIEAIKDQA 272 (363)
T ss_dssp GGGTCTTEEEEEESSST-TCCSSCCCEEEEE-CHHHHHHHHHTCCSC---------------CCBHHHHHHHHHHHHCHH
T ss_pred HhhcCCCEEEEeechhh-hcCchhceeeeec-CHHHHHHHHHhCCCC---------------CCCHHHHHHHHHHhcCHH
Confidence 1 123345777788998 45455 598776 444433221111111 11123444444444 236
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceecc---CCCCCeEEEEecCCC
Q 009181 408 GYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP---LQRPNSIHICVTLQH 484 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~---~~~~~~iRi~~~~~~ 484 (541)
++++..++..++++++.+.|++++++++. ++..+++++..+. +..++.+.|.++|+.+.. ++.++++|++++ +
T Consensus 273 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~ 348 (363)
T 3ffh_A 273 FIGECRTSNANGIKQYEAFAKRFEKVKLY-PANGNFVLIDLGI-EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG--K 348 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CCCSSEEEEECSS-CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceEC-CCCCeEEEEECCC-CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC--C
Confidence 67888999999999999999997799876 4566778888765 788999999999987654 334689999987 5
Q ss_pred HHHHHHHHHHHHHH
Q 009181 485 VAVVDVFLRDLRES 498 (541)
Q Consensus 485 ~e~id~~i~~L~~~ 498 (541)
.+|++++++.|+++
T Consensus 349 ~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 349 EEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 69999999999875
No 55
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=1.2e-26 Score=240.08 Aligned_cols=307 Identities=11% Similarity=0.097 Sum_probs=224.9
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchH--HHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DKAA 243 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~--~ka~ 243 (541)
.+...++.+++++.+++++|.+ .. + ++|+|||+|+..++..+ .+| ++|+++...|++. ...+
T Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~-~~----v--~~~~sgt~a~~~~~~~~------~~g---d~vi~~~~~~~~~~~~~~~ 93 (379)
T 3ke3_A 30 SKAFQEVMNDLLSNLKTVYNAE-AA----V--IIPGSGTYGMEAVARQL------TID---EDCLIIRNGWFSYRWTQIL 93 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCS-EE----E--EEESCHHHHHHHHHHHH------CTT---CEEEEEECSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCC-CE----E--EEcCChhHHHHHHHHhC------CCC---CeEEEEeCCchhHHHHHHH
Confidence 5666788888999999999987 33 4 89999999999987543 155 8999999988874 3455
Q ss_pred hhcCC--eEEEeeCCCC---------CccCHHHHHHhhc-cCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEE
Q 009181 244 QYFNI--KLWRVPVDKE---------FRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHV 308 (541)
Q Consensus 244 ~~~G~--~v~~v~~~~~---------~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhv 308 (541)
+..|+ +++.++++.. +.+|+++++++++ ++|++|++++++|++|.+.| +++|+++|++||+++|+
T Consensus 94 ~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~ 173 (379)
T 3ke3_A 94 EKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVI 173 (379)
T ss_dssp HHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEE
Confidence 66664 7888887431 2689999999996 58999999999999999999 99999999999999999
Q ss_pred eCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccc-cccccCCC---------
Q 009181 309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGG--------- 378 (541)
Q Consensus 309 D~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~-~~~~~~~~--------- 378 (541)
|++++ +.. ++++...|+|++++++||++.+|.|+|+++.+++.. ..... ....|...
T Consensus 174 D~~~~-g~~-----------~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~ 240 (379)
T 3ke3_A 174 DCIAS-GCV-----------WLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAI-KKVESTESNCFSLDLKQWLTIMR 240 (379)
T ss_dssp ECTTC-TTC-----------CCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHH-HHHHTCCCSCSTTCHHHHHHHHH
T ss_pred Eeccc-CCc-----------cccccccCCCEEEecchhhcCCCCceEEEEECHHHH-HhhhcCCCCceeecHHHHHHHHH
Confidence 99976 322 355555689999999999988999999877765432 11110 00111000
Q ss_pred c--cCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC--ee-EEEEecCCCCH
Q 009181 379 L--YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD--MT-IVAFGSDVVDI 453 (541)
Q Consensus 379 ~--~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~--~~-~v~f~~~~~~~ 453 (541)
. .......++.+-..++++.++++.+..+|++++.++..++++++++.|+++ +++++.++. .+ ++.+..++. .
T Consensus 241 ~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~~-~ 318 (379)
T 3ke3_A 241 AYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTERD-D 318 (379)
T ss_dssp HHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSCH-H
T ss_pred hhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCCc-c
Confidence 0 000011123344456677788888877889999999999999999999998 888876542 33 444444321 1
Q ss_pred HHHHHHHHhCCceeccCC--------CCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHH
Q 009181 454 FEVNDIMSSKGWHLNPLQ--------RPNSIHICVTLQHV-AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 454 ~~l~~~l~~~G~~~~~~~--------~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~ 503 (541)
....+.|.++|+.+..-. ..+.+|++++..++ +|++++++.|+++++++.
T Consensus 319 ~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 319 MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 223677888998654321 14789999987777 999999999999998876
No 56
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.95 E-value=7.3e-26 Score=238.04 Aligned_cols=299 Identities=16% Similarity=0.121 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCe
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK 249 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~ 249 (541)
.....++++.+++++|.+ . . +++++|++|+..+++++. ++| ++|+++.+.|+++..+++..|++
T Consensus 108 ~~~~~~l~~~la~~~g~~-~-----~--i~~~sGs~a~~~al~~l~-----~~g---d~vl~~~~~h~~~~~~~~~~g~~ 171 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTT-G-----A--IVFSTGYMANLGIISTLA-----GKG---EYVILDADSHASIYDGCQQGNAE 171 (427)
T ss_dssp CHHHHHHHHHHHHHHTCS-E-----E--EEESCHHHHHHHHHHHHS-----CTT---CEEEEETTCCHHHHHHHHHSCSE
T ss_pred cHHHHHHHHHHHHHhCCC-c-----e--EEecCcHHHHHHHHHHhc-----CCC---CEEEECCcccHHHHHHHHHcCCe
Confidence 355666778999999885 2 2 677777889999888864 256 89999999999999999999999
Q ss_pred EEEeeCCCCCccCHHHHHHhhcc----CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCC
Q 009181 250 LWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY 325 (541)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~i~~----~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~ 325 (541)
++.+|. +|+++|++++++ ++++|++++++||+|.+.|+++|.++|++||+++++|++|+++.+. ..|.
T Consensus 172 ~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~---~~g~ 243 (427)
T 2w8t_A 172 IVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG---PNGR 243 (427)
T ss_dssp EEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSS---TTSC
T ss_pred eEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccC---CCCC
Confidence 998885 599999999986 7899999999999999999999999999999999999999887652 1111
Q ss_pred CCC-CCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHH
Q 009181 326 PIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL 404 (541)
Q Consensus 326 ~~p-~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~l 404 (541)
... .++. .+++|++..++||+ +++.| |+++.+ +++..........|..+ ++.+...+++..++++.+
T Consensus 244 ~~~~~~~~-~~~~di~~~s~sK~-~g~~g-G~v~~~-~~l~~~l~~~~~~~~~~--------~~~~~~~~aa~~~al~~~ 311 (427)
T 2w8t_A 244 GVYEAQGL-EGQIDFVVGTFSKS-VGTVG-GFVVSN-HPKFEAVRLACRPYIFT--------ASLPPSVVATATTSIRKL 311 (427)
T ss_dssp CHHHHTTC-TTCCSEEEEESSST-TCSCC-EEEEEC-CTTGGGGGGTCHHHHSS--------CCCCHHHHHHHHHHHHHH
T ss_pred chHhhcCC-CcCCcEEEecchhh-hccCC-CEEEeC-HHHHHHHHHhccccccc--------CCCCHHHHHHHHHHHHHH
Confidence 010 0222 34789999999999 46666 776654 44443322111111110 111112233444555544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-CeeEEEEecCCC-CHHHHHHHHHhCCceeccCCC------CCeE
Q 009181 405 GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-DMTIVAFGSDVV-DIFEVNDIMSSKGWHLNPLQR------PNSI 476 (541)
Q Consensus 405 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~f~~~~~-~~~~l~~~l~~~G~~~~~~~~------~~~i 476 (541)
. ..++..++..++++++.+.|+++ ++++..++ ..+++++.+.+. +..++.+.|.++|+.+..... .+.+
T Consensus 312 ~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~l 388 (427)
T 2w8t_A 312 M--TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLL 388 (427)
T ss_dssp T--SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEE
T ss_pred h--cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEE
Confidence 3 24778889999999999999988 88887555 677888887642 467899999999987654322 2589
Q ss_pred EEEecCCCH-HHHHHHHHHHHHHHHHHHcCCC
Q 009181 477 HICVTLQHV-AVVDVFLRDLRESVETVKQNPG 507 (541)
Q Consensus 477 Ri~~~~~~~-e~id~~i~~L~~~~~~l~~~~~ 507 (541)
|++++..++ +++++++++|+++++++...+.
T Consensus 389 Ri~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 420 (427)
T 2w8t_A 389 RCSICAEHTPAQIQTVLGMFQAAGRAVGVIGL 420 (427)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHTCC--
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHhCcccc
Confidence 999997655 9999999999999988876543
No 57
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.95 E-value=3.4e-26 Score=237.11 Aligned_cols=308 Identities=15% Similarity=0.145 Sum_probs=224.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCCCCCCCCc-cceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQ-VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~-v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ 240 (541)
+|...++..++++++.+++.+.+|.+... ++ + ++|+||++|+..+++++.+ +| ++|+++.++|+++.
T Consensus 58 ~y~~~~g~~~l~~~la~~~~~~~g~~~~~--~~~v--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~~~~~~~~ 125 (389)
T 1gd9_A 58 HYGPNIGLLELREAIAEKLKKQNGIEADP--KTEI--MVLLGANQAFLMGLSAFLK-----DG---EEVLIPTPAFVSYA 125 (389)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCCCT--TTSE--EEESSTTHHHHHHHTTTCC-----TT---CEEEEEESCCTTHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCeE--EEcCChHHHHHHHHHHhCC-----CC---CEEEEcCCCchhHH
Confidence 34444566788888888888888864211 13 5 8999999999999988742 56 89999999999999
Q ss_pred HHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccc
Q 009181 241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (541)
Q Consensus 241 ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~ 315 (541)
.+++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.+ +++|+++|++||+++|+|++|+++
T Consensus 126 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~ 205 (389)
T 1gd9_A 126 PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHF 205 (389)
T ss_dssp HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred HHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhc
Confidence 99999999999999975 5789999999999989999999999999999975 899999999999999999999887
Q ss_pred hhhhhhhcCCCCCCCCcC-CCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCc
Q 009181 316 VLPFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (541)
Q Consensus 316 ~~~f~~~~g~~~p~~~~~-~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~ 392 (541)
... .... .+-..+. ..+.|++..++||+ +++.| +|+++.+ +++..........+.. + .
T Consensus 206 ~~~--~~~~--~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~----------~---~ 266 (389)
T 1gd9_A 206 IYD--DARH--YSIASLDGMFERTITVNGFSKT-FAMTGWRLGFVAAP-SWIIERMVKFQMYNAT----------C---P 266 (389)
T ss_dssp BCT--TCCC--CCGGGSTTCGGGEEEEEESTTT-TTCGGGCCEEEECC-HHHHHHHHHHHTTTTC----------S---C
T ss_pred ccC--CCCC--CCHhhccCCCCCEEEEecChhh-cCCcccceEEEEEC-HHHHHHHHHHHhhhcc----------C---C
Confidence 541 0000 0111111 24679999999998 56555 7987665 4433221111111100 0 1
Q ss_pred hHHHHHHHHHHH--hHH--HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC--CCCHHHHHHHHH-hCCc
Q 009181 393 LIAGAWAALMSL--GQE--GYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD--VVDIFEVNDIMS-SKGW 465 (541)
Q Consensus 393 ~~a~~~~al~~l--g~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~--~~~~~~l~~~l~-~~G~ 465 (541)
...++.++...+ +.. ++++..++..++++++.+.|+++ ++++..+....++++.++ +.+..++.+.|. ++|+
T Consensus 267 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 345 (389)
T 1gd9_A 267 VTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARV 345 (389)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCE
Confidence 122344443333 234 67888899999999999999998 887765444445666664 347788999997 8897
Q ss_pred eeccC---C--CCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 466 HLNPL---Q--RPNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 466 ~~~~~---~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
.+... + .++++|++++. +.+++++++++|++++++.
T Consensus 346 ~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 346 AVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp ECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHT
T ss_pred EEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 66432 1 24789999986 6699999999999998764
No 58
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.95 E-value=1.8e-26 Score=240.83 Aligned_cols=308 Identities=14% Similarity=0.113 Sum_probs=223.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchH
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~ 239 (541)
.|...++..++++++.+++.+.+|.+ +++ + ++|+|||+|+..+++++. ++| ++|+++.++|+++
T Consensus 73 ~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~----v--~~t~g~~~al~~~~~~l~-----~~g---d~Vl~~~~~~~~~ 138 (406)
T 1xi9_A 73 YYGDSEGLPELRKAIVEREKRKNGVDITPDD----V--RVTAAVTEALQLIFGALL-----DPG---DEILVPGPSYPPY 138 (406)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESHHHHHHHHHHHHHC-----CTT---CEEEEEESCCHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHhcCCCCCHHH----E--EEcCChHHHHHHHHHHhC-----CCC---CEEEEcCCCCccH
Confidence 34444566788888888998887754 333 5 899999999999999874 256 8999999999999
Q ss_pred HHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCccc
Q 009181 240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 240 ~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg 314 (541)
..+++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|.++|++||+++++|++|++
T Consensus 139 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~ 218 (406)
T 1xi9_A 139 TGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDL 218 (406)
T ss_dssp HHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT
T ss_pred HHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccc
Confidence 999999999999999874 5779999999999999999999999999999866 99999999999999999999987
Q ss_pred chhhhhhhcCCCCCCCCcCCCCc-eEEEeCCCCCCCCCCC--ceEEEE-ecc----cccccccccccccCCCccCCCccc
Q 009181 315 FVLPFAKKLGYPIPPFDFSVQGV-TSISVDVHKYGLAPKG--TSVVLY-RNR----EIRKHQFVAVTEWSGGLYVSPTVA 386 (541)
Q Consensus 315 ~~~~f~~~~g~~~p~~~~~~~gv-dsis~~~hK~~~~p~g--~g~ll~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 386 (541)
+.. . +...+...+. .+. ++++.++||+ +++.| +|++++ .++ ++.......... .
T Consensus 219 ~~~---~--~~~~~~~~~~-~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~-~---------- 280 (406)
T 1xi9_A 219 MTY---E--GEHISPGSLT-KDVPVIVMNGLSKV-YFATGWRLGYMYFVDPENKLSEVREAIDRLARI-R---------- 280 (406)
T ss_dssp CBS---S--SCCCCHHHHC-SSSCEEEEEESTTT-TCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHH-T----------
T ss_pred ccc---C--CCCCCHHHcC-CCceEEEEeccccc-cCCCccEEEEEEEecCchhHHHHHHHHHHHHHh-h----------
Confidence 653 1 0000001111 456 8888999999 55555 898773 444 443321111000 0
Q ss_pred CCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC---CCCHHHHHHHHH-h
Q 009181 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD---VVDIFEVNDIMS-S 462 (541)
Q Consensus 387 gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~---~~~~~~l~~~l~-~ 462 (541)
.+.+....+++.++++ .+.+++++..++..++++++.+.|+++|++++..+....++++..+ +.+..++.+.|. +
T Consensus 281 ~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (406)
T 1xi9_A 281 LCPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHN 359 (406)
T ss_dssp CCSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHh
Confidence 0111111223333332 1345678888999999999999999998998765433334444554 346788998887 8
Q ss_pred CCceecc---CC--CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 463 KGWHLNP---LQ--RPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 463 ~G~~~~~---~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+|+.+.. ++ .++++|+|++ .+.+++++++++|+++++++.
T Consensus 360 ~gi~v~~g~~f~~~~~~~lRis~~-~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 360 AHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp HCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEeCchhcCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHHHHh
Confidence 8976543 22 1578999998 556999999999999987653
No 59
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.95 E-value=5.5e-26 Score=235.31 Aligned_cols=320 Identities=15% Similarity=0.106 Sum_probs=229.2
Q ss_pred HHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhC--CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC
Q 009181 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (541)
Q Consensus 147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g--~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi 224 (541)
.+.+++...+.....++.. +..++++++.+++++.+| .++++ + ++|+|||+|+..+++++.+ +|
T Consensus 49 ~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~~~~-----~g- 114 (391)
T 4dq6_A 49 CIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEW----L--IYSPGVIPAISLLINELTK-----AN- 114 (391)
T ss_dssp HHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHSC-----TT-
T ss_pred HHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHH----e--EEcCChHHHHHHHHHHhCC-----CC-
Confidence 3444444444433333332 346788889999999999 55554 6 8999999999999998853 56
Q ss_pred CCCeEEecCCccchHHHHHhhcCCeEEEeeCC--C--CCccCHHHHHHhhccCceEEEeecCCCCCccc---cCHHHHHH
Q 009181 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD--K--EFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGE 297 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~--~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~i---d~i~~I~~ 297 (541)
++|+++.++|+++..+++..|++++.+|++ + ++.+|+++|++++++ +++|++++|+||+|.+ +++++|++
T Consensus 115 --d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~ 191 (391)
T 4dq6_A 115 --DKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGD 191 (391)
T ss_dssp --CEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHH
T ss_pred --CEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHH
Confidence 899999999999999999999999999987 2 567999999999998 9999999999999999 66889999
Q ss_pred HHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCC---CCceEEEeCCCCCCC-CCCCceEEEEeccccccccccccc
Q 009181 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV---QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVT 373 (541)
Q Consensus 298 la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~---~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~ 373 (541)
+|++||+++|+|++|+++... |...+++.... .+..++..++||.+. ++.++|+++.+++++.........
T Consensus 192 ~~~~~~~~li~De~~~~~~~~-----g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 266 (391)
T 4dq6_A 192 ICLKHNVKIISDEIHSDIILK-----KHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFT 266 (391)
T ss_dssp HHHHTTCEEEEECTTTTCBCT-----TCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHcCCEEEeeccccccccC-----CCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999876541 11011111111 134578889999942 444588877766454432211111
Q ss_pred ccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecC--C
Q 009181 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSD--V 450 (541)
Q Consensus 374 ~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~--~ 450 (541)
.|.. ++-+....+++.+++.. +.+.+++..++..++++++.+.|++ +|++++..+....++++.++ +
T Consensus 267 ~~~~---------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (391)
T 4dq6_A 267 RIDI---------KRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALG 336 (391)
T ss_dssp HTTC---------CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGC
T ss_pred hhcC---------CCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcC
Confidence 1110 00011112233334432 4456888899999999999999998 79999886555555557665 3
Q ss_pred CCHHHHHHHHHhC-Cceecc---CC--CCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 451 VDIFEVNDIMSSK-GWHLNP---LQ--RPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 451 ~~~~~l~~~l~~~-G~~~~~---~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
.+..++.+.|.++ |+.+.. ++ .++++|++++ .+.+++++++++|++++
T Consensus 337 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 337 LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc-CCHHHHHHHHHHHHHHh
Confidence 5788999999998 977643 22 2479999998 35699999999999876
No 60
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.95 E-value=5.8e-26 Score=233.78 Aligned_cols=302 Identities=12% Similarity=-0.015 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEE
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~ 252 (541)
..++++.+++++|.+ + + ++|+|||+|+.+++++++.. .++| ++|+++.++|+++..+++..|++++.
T Consensus 34 ~~~l~~~la~~~~~~--~----v--~~~~ggt~al~~~~~~~~~~--~~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~ 100 (375)
T 2fnu_A 34 SLLFEEALCEFLGVK--H----A--LVFNSATSALLTLYRNFSEF--SADR---NEIITTPISFVATANMLLESGYTPVF 100 (375)
T ss_dssp HHHHHHHHHHHHTCS--E----E--EEESCHHHHHHHHHHHSSCC--CTTS---CEEEECSSSCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCC--e----E--EEeCCHHHHHHHHHHHhccc--CCCC---CEEEECCCccHhHHHHHHHCCCEEEE
Confidence 345667889999886 3 4 89999999999999987310 1255 89999999999999999999999999
Q ss_pred eeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc
Q 009181 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (541)
Q Consensus 253 v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~ 332 (541)
+++++++.+|+++|++++++++++|+++++ +|.+.|+++|.++|++||+++|+|++|+.+..+... .+.
T Consensus 101 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-------~~~- 169 (375)
T 2fnu_A 101 AGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNK-------KVG- 169 (375)
T ss_dssp CCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE-------ETT-
T ss_pred eccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCe-------ecc-
Confidence 999887789999999999999998888877 899999999999999999999999999765442100 011
Q ss_pred CCCCceEEEeCCCCCCCCCCCceEEEEec-ccccccccccccccC----CCccCCCcccCCCCCchHHHHHHHHHHHhHH
Q 009181 333 SVQGVTSISVDVHKYGLAPKGTSVVLYRN-REIRKHQFVAVTEWS----GGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (541)
Q Consensus 333 ~~~gvdsis~~~hK~~~~p~g~g~ll~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~ 407 (541)
....+++.++++||+ ++| |.|++++++ +++............ ...+ .....+.+.+.. .+.+++.....+
T Consensus 170 ~~~~i~~~s~s~~K~-~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~a~~~~~~~ 244 (375)
T 2fnu_A 170 GFALASVFSFHAIKP-ITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEG-EVKSIGHNFRLN--EIQSALGLSQLK 244 (375)
T ss_dssp SSSSEEEEECCTTSS-SCC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCE-EESSCCCBCCCC--HHHHHHHHHHHT
T ss_pred ccCCeEEEeCCCCCC-ccc-cCceEEEeCCHHHHHHHHHHHhcCCcccccccc-ccccccccCCCC--HHHHHHHHHHHH
Confidence 112378888899999 577 888888853 444322111000000 0000 000112222222 222233323456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-----CeeEEEEecCC--C-CHHHHHHHHHhCCceeccC---------
Q 009181 408 GYLENTKAIMEVSESIQKGIKEIPELFIIGRP-----DMTIVAFGSDV--V-DIFEVNDIMSSKGWHLNPL--------- 470 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----~~~~v~f~~~~--~-~~~~l~~~l~~~G~~~~~~--------- 470 (541)
++++..++..++++++.+.|+++|++++..++ ...++++.++. . +..++.+.|.++|+.+...
T Consensus 245 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~ 324 (375)
T 2fnu_A 245 KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQL 324 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchh
Confidence 78889999999999999999999999987652 22344555443 2 6778999999999766521
Q ss_pred -C-------CC-------CeEEEEecCCCH-HHHHHHHHHHHHHHHHHH
Q 009181 471 -Q-------RP-------NSIHICVTLQHV-AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 471 -~-------~~-------~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~ 503 (541)
+ .| +.+|++++..++ +|++++++.|++++++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 325 YQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 0 11 579999987665 999999999999987753
No 61
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.95 E-value=1.1e-26 Score=242.01 Aligned_cols=304 Identities=13% Similarity=0.100 Sum_probs=228.5
Q ss_pred chHHHHHHHHHHHHHHHHhCCCC---CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKE---KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~---~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka 242 (541)
.++..++.+++.+++++.+|.+. ++ + ++|+||++|+..+++++.. +| ++|+++.++|+++..+
T Consensus 77 ~~g~~~l~~~l~~~l~~~~g~~~~~~~~----i--~~~~g~~~a~~~~~~~l~~-----~g---d~vl~~~~~~~~~~~~ 142 (407)
T 3nra_A 77 YRGDLGIRDLLAPRLAAFTGAPVDARDG----L--IITPGTQGALFLAVAATVA-----RG---DKVAIVQPDYFANRKL 142 (407)
T ss_dssp TTCCHHHHHHHHHHHHHHHTSCCCTTTS----E--EEESHHHHHHHHHHHTTCC-----TT---CEEEEEESCCTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCc----E--EEeCCcHHHHHHHHHHhCC-----CC---CEEEEcCCcccchHHH
Confidence 45667888889999999999852 33 6 8999999999999988742 56 8999999999999999
Q ss_pred HhhcCCeEEEeeC------CCCCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcc
Q 009181 243 AQYFNIKLWRVPV------DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 243 ~~~~G~~v~~v~~------~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~g 313 (541)
++..|++++.+|+ ++++.+|+++|++++++++++|++++|+||+|.+.| +++|+++|++||+++|+|++|+
T Consensus 143 ~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~ 222 (407)
T 3nra_A 143 VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS 222 (407)
T ss_dssp HHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 9999999999998 367889999999999999999999999999999988 9999999999999999999998
Q ss_pred cchhhhhhhcCCCCCCCCc---CCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCC
Q 009181 314 GFVLPFAKKLGYPIPPFDF---SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (541)
Q Consensus 314 g~~~~f~~~~g~~~p~~~~---~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr 389 (541)
++... |...+.+.. ...+.+++..+++|.+. ++.++|+++. ++++..........|..+
T Consensus 223 ~~~~~-----g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~----------- 285 (407)
T 3nra_A 223 RLRYA-----GASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARMEKLQAIVSLR----------- 285 (407)
T ss_dssp TSBCT-----TCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE-CHHHHHHHHHHHHHHTSS-----------
T ss_pred ccccC-----CCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc-CHHHHHHHHHHHhhhccC-----------
Confidence 77541 111111211 23556788999999943 3345787665 444433221111111110
Q ss_pred CCchHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC--CCHHHHHHHHHh-CC
Q 009181 390 PGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV--VDIFEVNDIMSS-KG 464 (541)
Q Consensus 390 ~~~~~a~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~--~~~~~l~~~l~~-~G 464 (541)
....++.++...+ +.+.+++..++..++++++.+.|+++|++++..+....++++.+.. .+..++.+.|.+ +|
T Consensus 286 --~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 363 (407)
T 3nra_A 286 --AAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAG 363 (407)
T ss_dssp --SCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHC
T ss_pred --CChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCC
Confidence 0122444444334 2356788889999999999999999989988765555666666654 477889999865 59
Q ss_pred ceecc---CC--CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 465 WHLNP---LQ--RPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 465 ~~~~~---~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+.+.. +. .++++|+|++. +.+++++++++|++++++++
T Consensus 364 i~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 364 VVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp EECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHHHHB
T ss_pred EEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHhh
Confidence 76643 21 35789999986 66999999999999998764
No 62
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.95 E-value=6.5e-26 Score=234.97 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=220.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchH
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~ 239 (541)
+|....+..++++++.+++...+|.+ +++ + ++|+||++|+.++++++.+ +| ++|+++.+.|+++
T Consensus 63 ~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~g~~~al~~~~~~l~~-----~g---d~Vlv~~p~y~~~ 128 (385)
T 1b5p_A 63 KYAPPAGIPELREALAEKFRRENGLSVTPEE----T--IVTVGGSQALFNLFQAILD-----PG---DEVIVLSPYWVSY 128 (385)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHTTCCCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCChHH----E--EEcCChHHHHHHHHHHhcC-----CC---CEEEEcCCCchhH
Confidence 44334556788888888888877864 343 6 8999999999999998743 56 8999999999999
Q ss_pred HHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCccc
Q 009181 240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 240 ~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg 314 (541)
...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||||.+.+ +++|+++|++||+++++|++|+.
T Consensus 129 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~ 208 (385)
T 1b5p_A 129 PEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEH 208 (385)
T ss_dssp HHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred HHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchh
Confidence 999999999999999974 6789999999999999999999999999999866 89999999999999999999987
Q ss_pred chhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCc
Q 009181 315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (541)
Q Consensus 315 ~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~ 392 (541)
+... . .. .+..++.. +.+++..+++|. +++.| +|+++.+ +++..........+. .+.
T Consensus 209 ~~~~---~-~~-~~~~~~~~-~~~i~~~s~SK~-~~~~G~RiG~~~~~-~~~~~~l~~~~~~~~-------------~~~ 267 (385)
T 1b5p_A 209 LLYE---G-EH-FSPGRVAP-EHTLTVNGAAKA-FAMTGWRIGYACGP-KEVIKAMASVSRQST-------------TSP 267 (385)
T ss_dssp CBSS---S-CC-CCGGGTCT-TTEEEEEESTTT-TTCGGGCCEEEECC-HHHHHHHHHHHHTTT-------------CSC
T ss_pred cccC---C-CC-CCHHHcCC-CCEEEEEechhh-cCCcccceEEEEeC-HHHHHHHHHHHhhcc-------------CCC
Confidence 6541 1 00 11111111 567888899999 56556 8987664 443322111111110 011
Q ss_pred hHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC--CCCHHHHHHHHHhCCc
Q 009181 393 LIAGAWAALMSL-----GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD--VVDIFEVNDIMSSKGW 465 (541)
Q Consensus 393 ~~a~~~~al~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~--~~~~~~l~~~l~~~G~ 465 (541)
...+++++...+ +.+.+++..+++.++++++.+.|+++ ++++..+.....++.... +.+..++.+.|.++|+
T Consensus 268 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv 346 (385)
T 1b5p_A 268 DTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGV 346 (385)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCe
Confidence 122444444444 34567788889999999999999987 887665444444555554 3477889999999997
Q ss_pred eecc---CCCCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 466 HLNP---LQRPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 466 ~~~~---~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
.+.. ++.++++|+|++ .+.+++++++++|+++++
T Consensus 347 ~v~~g~~f~~~~~iRis~~-~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 347 AVVPGTDFAAFGHVRLSYA-TSEENLRKALERFARVLG 383 (385)
T ss_dssp ECEESGGGTCTTEEEEECC-SCHHHHHHHHHHGGGGC-
T ss_pred EEecccccCCCCeEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 6542 333579999998 455889999988877653
No 63
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.95 E-value=3.3e-26 Score=233.74 Aligned_cols=293 Identities=16% Similarity=0.237 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH--Hhhc-
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--AQYF- 246 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka--~~~~- 246 (541)
.....++++++++++| ++.+ + ++|+|||+|+..+++++++ +| ++|+++.+.|+++..+ +...
T Consensus 42 ~~~~~~l~~~la~~~g-~~~~----v--~~~~~gt~a~~~al~~~~~-----~g---d~vi~~~~~~~~~~~~~~~~~~~ 106 (356)
T 1v72_A 42 DELTAQVKRKFCEIFE-RDVE----V--FLVPTGTAANALCLSAMTP-----PW---GNIYCHPASHINNDECGAPEFFS 106 (356)
T ss_dssp SHHHHHHHHHHHHHHT-SCCE----E--EEESCHHHHHHHHHHTSCC-----TT---EEEEECTTSHHHHSSTTHHHHHT
T ss_pred chHHHHHHHHHHHHhC-CCCc----E--EEeCCccHHHHHHHHHhcC-----CC---CEEEEcCccchhhhhchHHHHHh
Confidence 3456678889999999 4332 4 8999999999999998753 56 8999999999998766 7777
Q ss_pred -CCeEEEeeCCCCCccCHHHHHH-hhcc-------CceEEEeecCCCCCcc---ccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 247 -NIKLWRVPVDKEFRADVKAIKK-YINR-------NTVLIVGSAPGFPHGI---IDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 247 -G~~v~~v~~~~~~~~d~~~Le~-~i~~-------~t~~vv~~~~~~~~G~---id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
|++++.+|.+ ++.+|+++|++ ++++ ++++|++++|+| +|. .+++++|.++|++||+++|+|++|+.
T Consensus 107 ~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 184 (356)
T 1v72_A 107 NGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFA 184 (356)
T ss_dssp TSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred CCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhH
Confidence 9999999985 57899999999 9986 689999999875 999 56689999999999999999999976
Q ss_pred chhhhhhhcCCCCCCCCcC-CCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch
Q 009181 315 FVLPFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (541)
Q Consensus 315 ~~~~f~~~~g~~~p~~~~~-~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~ 393 (541)
+... ..|. +...+. ..++|++++++||+ ++|.|+|+++. ++++......... .. + .-....
T Consensus 185 ~~~~---~~~~--~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~-~~~~~~~~~~~~~-~~-~---------~~~~~~ 246 (356)
T 1v72_A 185 NALV---SLGC--SPAEMTWKAGVDALSFGATKN-GVLAAEAIVLF-NTSLATEMSYRRK-RA-G---------HLSSKM 246 (356)
T ss_dssp HHHH---HHTC--CTTTTTGGGTCCEEEECCGGG-TCSSCEEEEES-SGGGHHHHHHHHH-HT-T---------CCCSST
T ss_pred hHhc---cCCC--CHHHhhhhhcCCEEEEecccC-CCcCccEEEEE-CHHHHhhHHHHhh-cc-C---------chhhhH
Confidence 5432 1121 111111 13678999999999 56888786555 5554432111100 01 1 001111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceecc--CC
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP--LQ 471 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~--~~ 471 (541)
..++..++..+....+.+..++..++++++.+.|++++++++..++..+++++..+ .++.+.|.++|+.+.. ++
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~v~~g~~~ 322 (356)
T 1v72_A 247 RFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----SAMIDALLKAGFGFYHDRWG 322 (356)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----HHHHHHHHHTTCBCBCSSSS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC----HHHHHHHHhcCeEEeccccC
Confidence 22344455555555577788888999999999999988999887767777777764 3788999999987653 33
Q ss_pred CCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 472 RPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 472 ~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
++++|++++..++ +++++++++|++++++.
T Consensus 323 -~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 323 -PNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp -TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred -CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 5799999876655 99999999999887654
No 64
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=1e-25 Score=235.42 Aligned_cols=313 Identities=18% Similarity=0.168 Sum_probs=229.3
Q ss_pred hhcccCCCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEe
Q 009181 154 MFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231 (541)
Q Consensus 154 ~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~ 231 (541)
..+.....+|...++..++++++.+++.+.+|.+ +++ + ++|+|||+|+..+++++.. +| ++|++
T Consensus 66 ~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~----v--~~~~g~t~a~~~~~~~~~~-----~g---d~Vl~ 131 (409)
T 2gb3_A 66 YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPEN----V--LVTNGGSEAILFSFAVIAN-----PG---DEILV 131 (409)
T ss_dssp HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEE
T ss_pred HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHH----E--EEeCCHHHHHHHHHHHhCC-----CC---CEEEE
Confidence 3343333344444566788888888888877754 333 5 8999999999999998742 56 89999
Q ss_pred cCCccchHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCcccc---CHHHHHHHHHHcCCEE
Q 009181 232 PVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHGTCL 306 (541)
Q Consensus 232 ~~~~h~s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id---~i~~I~~la~~~~i~l 306 (541)
+.++|+++..+++..|++++.+|+++ ++.+ +++|++++++++++|++++|+||+|.+. ++++|.++|++||+++
T Consensus 132 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 210 (409)
T 2gb3_A 132 LEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFL 210 (409)
T ss_dssp EESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999999999975 4556 8999999998999999999999999985 4899999999999999
Q ss_pred EEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCc
Q 009181 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384 (541)
Q Consensus 307 hvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (541)
|+|++|+++... . .. .+.+. ...+.|+++.++||+ +++.| +|+++.+++++..........|.
T Consensus 211 i~Dea~~~~~~~---~-~~-~~~~~-~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-------- 275 (409)
T 2gb3_A 211 IVDEVYSEIVFR---G-EF-ASALS-IESDKVVVIDSVSKK-FSACGARVGCLITRNEELISHAMKLAQGRL-------- 275 (409)
T ss_dssp EEECTTTTCBCS---S-CC-CCGGG-SCCTTEEEEEESTTT-TTCGGGCCEEEECSCHHHHHHHHHHHHHSC--------
T ss_pred EEECcccccccC---C-CC-CCccc-cCCCCEEEEecchhc-cCCccceEEEEEECcHHHHHHHHHHHhccC--------
Confidence 999999876541 1 00 11111 124679999999999 45555 89877665344332211111110
Q ss_pred ccCCCCCchHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEE-ecCCCeeEEEEecCCCCHHHHHHHHH
Q 009181 385 VAGSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKEIPELFI-IGRPDMTIVAFGSDVVDIFEVNDIMS 461 (541)
Q Consensus 385 ~~gsr~~~~~a~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v-~~~~~~~~v~f~~~~~~~~~l~~~l~ 461 (541)
+....+++++...+ +.+++++..++..++++++.+.|+++ ++++ ..+....++++..++.+..++.+.|.
T Consensus 276 ------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 348 (409)
T 2gb3_A 276 ------APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPVEDAEEFARWML 348 (409)
T ss_dssp ------CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSSSCHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeCCCCHHHHHHHHH
Confidence 01122444444444 56778888999999999999999988 8877 54433445555665557888999998
Q ss_pred hC------Cceecc---CC-----CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 462 SK------GWHLNP---LQ-----RPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 462 ~~------G~~~~~---~~-----~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
++ |+.+.. +. .++++|++++ .+.+++++++++|+++++++++
T Consensus 349 ~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 349 TDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp HSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHhhh
Confidence 87 876543 21 2578999999 4569999999999999988764
No 65
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.95 E-value=6.9e-26 Score=235.55 Aligned_cols=303 Identities=16% Similarity=0.114 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhc
Q 009181 169 VARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF 246 (541)
Q Consensus 169 ~~~~e~ev~~~la~l~g--~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~ 246 (541)
..++++.+.+++.+.+| .++++ + ++|+||++|+..+++++.+ +| ++|+++.++|+++..+++..
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~----v--~~t~g~~~a~~~~~~~l~~-----~g---d~vl~~~p~~~~~~~~~~~~ 133 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDW----I--INTAGVVPAVFNAVREFTK-----PG---DGVIIITPVYYPFFMAIKNQ 133 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGG----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEECSSCCTHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhCCCCChhh----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEEcCCCcHhHHHHHHHc
Confidence 56788888888888888 44444 6 8999999999999998752 56 89999999999999999999
Q ss_pred CCeEEEeeCC-C--CCccCHHHHHHhhc-cCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 247 NIKLWRVPVD-K--EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 247 G~~v~~v~~~-~--~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
|++++.+|++ + ++.+|+++|+++++ +++++|++++|+||+|.+.| +++|+++|++||+++|+|++|+++...
T Consensus 134 g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~- 212 (399)
T 1c7n_A 134 ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP- 212 (399)
T ss_dssp TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT-
T ss_pred CCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-
Confidence 9999999986 3 35699999999998 68999999999999999988 999999999999999999999876541
Q ss_pred hhhcCCCCCCCCcCC---CCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchH
Q 009181 320 AKKLGYPIPPFDFSV---QGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLI 394 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~---~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~ 394 (541)
|...+++.... .+.+++..+++|+ +++.| +|+++.+++++..........|.. ++ . ..
T Consensus 213 ----g~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~---------~~-~--~~ 275 (399)
T 1c7n_A 213 ----GYEHTVFQSIDEQLADKTITFTAPSKT-FNIAGMGMSNIIIKNPDIRERFTKSRDATSG---------MP-F--TT 275 (399)
T ss_dssp ----TCCCCCGGGSCHHHHTTEEEEECSHHH-HTCGGGCCEEEECCCHHHHHHHHHHHHHTTC---------CC-C--CH
T ss_pred ----CCCcccHHHcCccccCcEEEEEeChhh-ccccchheEEEEECCHHHHHHHHHHHhhccc---------CC-C--CH
Confidence 11011111111 2456788899999 44444 798777655444332211111110 01 0 12
Q ss_pred HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecCC--CCHHHHHHHHH-hCCceec
Q 009181 395 AGAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSDV--VDIFEVNDIMS-SKGWHLN 468 (541)
Q Consensus 395 a~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~~--~~~~~l~~~l~-~~G~~~~ 468 (541)
.+++++...+ +.+.+++..++..++++++.+.|++ +|++++..+....++++.+++ .+..++.+.|. ++|+.+.
T Consensus 276 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 355 (399)
T 1c7n_A 276 LGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFD 355 (399)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEe
Confidence 2344433333 3567888889999999999999998 889887654434444567653 47788999997 7897664
Q ss_pred cC---C--CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 469 PL---Q--RPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 469 ~~---~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
.. + .++++|++++.. .+++++++++|+++++++++
T Consensus 356 ~g~~~~~~~~~~iRis~~~~-~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 356 EGYIFGDGGIGFERINLAAP-SSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp EGGGGCGGGTTEEEEECCSC-HHHHHHHHHHHHHHHHHHC-
T ss_pred CccccCCCCCCeEEEEeccC-HHHHHHHHHHHHHHHHHHHh
Confidence 32 1 347899999864 68999999999999988764
No 66
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.95 E-value=4.3e-25 Score=227.40 Aligned_cols=286 Identities=13% Similarity=0.115 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcC
Q 009181 170 ARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G 247 (541)
.++++.+.+++.+.+|.+ +++ + ++|+|+++++..+++++.+ +| ++|+++.+.|+++..+++..|
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~~----v--~~~~G~~~al~~~~~~l~~-----~g---d~Vl~~~~~y~~~~~~~~~~g 137 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRDN----L--WAANGSNEILQQLLQAFGG-----PG---RTALGFQPSYSMHPILAKGTH 137 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGG----E--EEESHHHHHHHHHHHHHCS-----TT---CEEEEEESSCTHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhcccCCCChHh----E--EECCChHHHHHHHHHHhcC-----CC---CEEEEcCCChHHHHHHHHHcC
Confidence 578887888888877654 443 5 8999999999999988742 56 899999999999999999999
Q ss_pred CeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCC
Q 009181 248 IKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP 326 (541)
Q Consensus 248 ~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~ 326 (541)
++++.+|.++++.+|++++++++++ ++++|++++|+||+|.+.|++++.++|+.+++++++|++|+++...
T Consensus 138 ~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~-------- 209 (369)
T 3cq5_A 138 TEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPS-------- 209 (369)
T ss_dssp CEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS--------
T ss_pred CEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCC--------
Confidence 9999999888889999999999988 8999999999999999999999999999999999999999877531
Q ss_pred CCCCCc-CCCC-ceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHH
Q 009181 327 IPPFDF-SVQG-VTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (541)
Q Consensus 327 ~p~~~~-~~~g-vdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~ 402 (541)
.+.+.. ...+ .+++..++||++ ++.| +|+++.+ +++..........| +....+++++..
T Consensus 210 ~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~---------------~~~~~~~~a~~~ 272 (369)
T 3cq5_A 210 PSATTLLEKYPTKLVVSRTMSKAF-DFAGGRLGYFVAN-PAFIDAVMLVRLPY---------------HLSALSQAAAIV 272 (369)
T ss_dssp CCGGGGTTTCTTTEEEEEESSSTT-SCGGGCCEEEEEC-THHHHHHHTTSCTT---------------CSCHHHHHHHHH
T ss_pred cchHHHHhhCCCCEEEEEechHhc-CCcccceEEEEeC-HHHHHHHHHcCCCC---------------CCCHHHHHHHHH
Confidence 001111 2234 678888999994 4334 7987765 43332211111111 011234444444
Q ss_pred HHh-HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEec
Q 009181 403 SLG-QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVT 481 (541)
Q Consensus 403 ~lg-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~ 481 (541)
.+. .+.+++..++..++++++.+.|++. ++++. ++..+++++..+ .+..++.+.|.++|+.+...+.++++|++++
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~~~iRis~~ 349 (369)
T 3cq5_A 273 ALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDF-SDQHAAWQAFLDRGVLIRDVGIAGHLRTTIG 349 (369)
T ss_dssp HHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECC-SSHHHHHHHHHHTTEECBCCSCTTEEEEECC
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECC-CCHHHHHHHHHHCCEEEEECCCCCeEEEEeC
Confidence 442 3457788889999999999999884 88876 556677888765 4678899999999987765555689999998
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 009181 482 LQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 482 ~~~~e~id~~i~~L~~~~ 499 (541)
+.++++++++.|++++
T Consensus 350 --~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 350 --VPEENDAFLDAAAEII 365 (369)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 5699999999999876
No 67
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.94 E-value=9.1e-26 Score=235.30 Aligned_cols=307 Identities=16% Similarity=0.108 Sum_probs=222.2
Q ss_pred cccchHHHHHHHHHHHHHHHHhCC--CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH
Q 009181 163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (541)
Q Consensus 163 ~~~~~~~~~~e~ev~~~la~l~g~--~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ 240 (541)
|...++..++++++.+++.+.+|. ++++ + ++|+|||+|+..+++++.+ +| ++|+++.++|+++.
T Consensus 71 y~~~~~~~~l~~~la~~~~~~~g~~~~~~~----v--~~t~g~t~a~~~~~~~~~~-----~g---d~vl~~~p~~~~~~ 136 (407)
T 2zc0_A 71 YTPANGIPELREELAAFLKKYDHLEVSPEN----I--VITIGGTGALDLLGRVLID-----PG---DVVITENPSYINTL 136 (407)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHSCCCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCcce----E--EEecCHHHHHHHHHHHhcC-----CC---CEEEEeCCChHHHH
Confidence 333445678888888888877784 3443 5 8999999999999999853 56 89999999999999
Q ss_pred HHHhhcCCeEEEeeCCCCCccCHHHHHHhhc----c--CceEE-EeecCCCCCccccCHH---HHHHHHHHcCCEEEEeC
Q 009181 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYIN----R--NTVLI-VGSAPGFPHGIIDPIQ---ELGELALSHGTCLHVDL 310 (541)
Q Consensus 241 ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~----~--~t~~v-v~~~~~~~~G~id~i~---~I~~la~~~~i~lhvD~ 310 (541)
.+++..|++++.+|+++++ +|+++|+++++ + ++++| ++++++||+|.+.|++ +|+++|++||+++|+|+
T Consensus 137 ~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De 215 (407)
T 2zc0_A 137 LAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDT 215 (407)
T ss_dssp HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 9999999999999997765 99999999998 6 78776 5889999999999876 99999999999999999
Q ss_pred CcccchhhhhhhcCCCCCCC-CcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCC
Q 009181 311 CLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (541)
Q Consensus 311 a~gg~~~~f~~~~g~~~p~~-~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr 389 (541)
+|+++... |...+.+ .+...+.+.+..+++|++.++..+|+++.+ +++..........+. . .
T Consensus 216 ~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~--------~---~ 278 (407)
T 2zc0_A 216 AYNFMRYE-----GGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAE-GEILKKVLMQKQPID--------F---C 278 (407)
T ss_dssp TTTTSBSS-----CSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECC-HHHHHHHHHHHTTTT--------S---S
T ss_pred CCcccccC-----CCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecC-HHHHHHHHHHHHhhc--------C---C
Confidence 99877541 1101111 122234456777889995523348887664 444332211111110 0 0
Q ss_pred CCchHHHHHHHHHHHh----H-HHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecCC-CCHHHHHHHHHh
Q 009181 390 PGGLIAGAWAALMSLG----Q-EGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSDV-VDIFEVNDIMSS 462 (541)
Q Consensus 390 ~~~~~a~~~~al~~lg----~-~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~~ 462 (541)
.. ..+++++...+. . +.+++..++..++++++.+.|++ .|++++..+....++++..++ .+..++.+.|.+
T Consensus 279 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 356 (407)
T 2zc0_A 279 AP--AISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANELME 356 (407)
T ss_dssp SC--HHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTCCHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCCCHHHHHHHHHH
Confidence 01 123333333332 2 45667788888899999999987 678877655556678888753 478899999999
Q ss_pred C-CceeccC---C----CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 463 K-GWHLNPL---Q----RPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 463 ~-G~~~~~~---~----~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+ |+.+... . .++++|++++..+.+++++++++|+++++++.
T Consensus 357 ~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 357 REGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp HTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHHC
T ss_pred hCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8 9776432 1 34789999987655999999999999988764
No 68
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.94 E-value=2.9e-25 Score=226.91 Aligned_cols=288 Identities=15% Similarity=0.092 Sum_probs=218.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v 253 (541)
.++++++++++|.++++ + ++|+|||+|+..+++++.+ +| ++|+++.+.|+++...++..|++++.+
T Consensus 54 ~~l~~~la~~~~~~~~~----i--~~~~g~~~a~~~~~~~l~~-----~g---d~vl~~~~~~~~~~~~~~~~g~~~~~~ 119 (354)
T 3ly1_A 54 LMLGNKLAAHHQVEAPS----I--LLTAGSSEGIRAAIEAYAS-----LE---AQLVIPELTYGDGEHFAKIAGMKVTKV 119 (354)
T ss_dssp HHHHHHHHHHTTSCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEESSSCTHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCChHH----E--EEeCChHHHHHHHHHHHhC-----CC---CeEEECCCCchHHHHHHHHcCCEEEEe
Confidence 45777999999987765 6 8999999999999998742 56 899999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhc--cCceEEEeecCCCCCccccCHHHHHHHHHH--cCCEEEEeCCcccchhhhhhhcCCCCCC
Q 009181 254 PVDKEFRADVKAIKKYIN--RNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (541)
Q Consensus 254 ~~~~~~~~d~~~Le~~i~--~~t~~vv~~~~~~~~G~id~i~~I~~la~~--~~i~lhvD~a~gg~~~~f~~~~g~~~p~ 329 (541)
|.++++.+|+++|+++++ +++++|++++|+||+|.+.|.+++.++++. ||+++++|++|+++... ... .+.
T Consensus 120 ~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~---~~~--~~~ 194 (354)
T 3ly1_A 120 KMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVND---PRF--RSI 194 (354)
T ss_dssp CCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCC---TTC--CCS
T ss_pred cCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccc---ccc--CCH
Confidence 999889999999999998 789999999999999999999888888887 99999999999876531 100 011
Q ss_pred CCc-CCC-CceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-
Q 009181 330 FDF-SVQ-GVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG- 405 (541)
Q Consensus 330 ~~~-~~~-gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg- 405 (541)
+.. ... +.+++..++||++. ++.++|+++. ++++..........| +....+++++...+.
T Consensus 195 ~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~a~~~~l~~ 258 (354)
T 3ly1_A 195 SPMITQGAENIILLKTFSKIHAMAGMRVGYAVA-HPTVIALMGRYVAGE---------------KINFSGVDAALASMND 258 (354)
T ss_dssp HHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC-CHHHHHHHGGGTTCS---------------CCCHHHHHHHHHHTTC
T ss_pred HHHhhhcCCCEEEEeeChhhccChhhhheeeec-CHHHHHHHHHhcCCC---------------CCCHHHHHHHHHHhcC
Confidence 111 112 55788889999953 4455787665 444433221111111 111234444444442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceec-c-CCCCCeEEEEecCC
Q 009181 406 QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLN-P-LQRPNSIHICVTLQ 483 (541)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~-~-~~~~~~iRi~~~~~ 483 (541)
.+.+++..++..++++++.+.|+++ ++++. ++...++++.++. +..++.+.|.++|+.+. . .+.++++|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~-- 333 (354)
T 3ly1_A 259 SAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLVV-PLKDYQTHMADAGVLIGRAFPPADNWCRISLG-- 333 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECSS-CHHHHHHHHHHTTEECCCCCTTCTTEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCC-CHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC--
Confidence 3668888999999999999999987 77765 4566777888765 78899999999998766 1 123579999987
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 009181 484 HVAVVDVFLRDLRESVET 501 (541)
Q Consensus 484 ~~e~id~~i~~L~~~~~~ 501 (541)
+.++++++++.|++++++
T Consensus 334 ~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 334 TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 568999999999998753
No 69
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.94 E-value=2e-25 Score=234.70 Aligned_cols=305 Identities=16% Similarity=0.157 Sum_probs=220.8
Q ss_pred cccchHHHHHHHHHHHHHHHHhC-----CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccc
Q 009181 163 LDIFQSVARFEAEVIAMTAALLG-----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (541)
Q Consensus 163 ~~~~~~~~~~e~ev~~~la~l~g-----~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~ 237 (541)
|...++..++++ .++++++ .++++ + ++|+|||+|+.++++++.+ +| ++|+++.++|+
T Consensus 92 y~~~~g~~~lr~----~la~~~~~~~~~~~~~~----v--~~t~g~t~al~~~~~~l~~-----~g---d~vl~~~p~~~ 153 (427)
T 3dyd_A 92 YAPSIGFLSSRE----EIASYYHCPEAPLEAKD----V--ILTSGCSQAIDLCLAVLAN-----PG---QNILVPRPGFS 153 (427)
T ss_dssp CCCTTCCHHHHH----HHHHHHCBTTBCCCGGG----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCT
T ss_pred CCCCCCcHHHHH----HHHHHHhhcCCCCChHH----E--EEecCcHHHHHHHHHHhcC-----CC---CEEEEcCCCch
Confidence 333344444444 6666666 44444 6 9999999999999999853 56 89999999999
Q ss_pred hHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCc
Q 009181 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL 312 (541)
Q Consensus 238 s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~ 312 (541)
.+...++..|++++.+|.++ ++.+|+++|++++++++.+|++++|+||+|.+.| +++|+++|++||+++++|++|
T Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay 233 (427)
T 3dyd_A 154 LYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIY 233 (427)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 99999999999999999864 6789999999999999999999999999999999 999999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCCCcCCCCc-eEEEeCCCCC-CCCCCCceEEEEecc------cccccccccc-cccCCCccCCC
Q 009181 313 GGFVLPFAKKLGYPIPPFDFSVQGV-TSISVDVHKY-GLAPKGTSVVLYRNR------EIRKHQFVAV-TEWSGGLYVSP 383 (541)
Q Consensus 313 gg~~~~f~~~~g~~~p~~~~~~~gv-dsis~~~hK~-~~~p~g~g~ll~~~~------~~~~~~~~~~-~~~~~~~~~~~ 383 (541)
+++... |...+.+.....+. .+++.+++|. +..+..+|+++.+++ ++........ ..|
T Consensus 234 ~~~~~~-----g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~-------- 300 (427)
T 3dyd_A 234 GDMVFS-----DCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRIL-------- 300 (427)
T ss_dssp TTCBCS-----SCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHC--------
T ss_pred hhhccC-----CCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccC--------
Confidence 887541 11011121111222 3556699997 344445899888764 2221110000 001
Q ss_pred cccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC------CCCHHHHH
Q 009181 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD------VVDIFEVN 457 (541)
Q Consensus 384 ~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~------~~~~~~l~ 457 (541)
+-+....+++.++++....+++++..+++.++++++.+.|+++|+++++.+....++++..+ ..+..++.
T Consensus 301 ----~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~ 376 (427)
T 3dyd_A 301 ----GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFT 376 (427)
T ss_dssp ----CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHH
T ss_pred ----CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHH
Confidence 00111122333444433467889999999999999999999999999876665566666554 13567888
Q ss_pred HHHH-hCCceecc---CCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 458 DIMS-SKGWHLNP---LQRPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 458 ~~l~-~~G~~~~~---~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+.|. ++|+.+.. ++.++++|++++ .+.+++++++++|++++++++
T Consensus 377 ~~l~~~~gV~v~~g~~~~~~~~iRis~~-~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 377 ERLVAEQSVHCLPATCFEYPNFIRVVIT-VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHCEECEEGGGGTCTTEEEEESC-SCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCEEEECCcccCCCCeEEEEEC-CCHHHHHHHHHHHHHHHHHhh
Confidence 8875 78876542 345689999987 456999999999999998764
No 70
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.94 E-value=8e-26 Score=234.14 Aligned_cols=300 Identities=15% Similarity=0.146 Sum_probs=221.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCC--CC-CCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~--~~-~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s 238 (541)
+|...++..++++++.+++.+.+|.+ ++ + + ++|+|+++|+..+++++.+ +| ++|+++.+.|++
T Consensus 62 ~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~----v--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~p~~~~ 127 (386)
T 1u08_A 62 QYAPMTGVQALREAIAQKTERLYGYQPDADSD----I--TVTAGATEALYAAITALVR-----NG---DEVICFDPSYDS 127 (386)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTT----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----E--EEcCChHHHHHHHHHHhCC-----CC---CEEEEeCCCchh
Confidence 34444567788888999998888864 44 4 6 8999999999999998742 56 899999999999
Q ss_pred HHHHHhhcCCeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCccc
Q 009181 239 YDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg 314 (541)
+...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|.++|++||+++|+|++|++
T Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~ 207 (386)
T 1u08_A 128 YAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH 207 (386)
T ss_dssp HHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTT
T ss_pred HHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999999999976 6889999999999989999999999999999976 68999999999999999999987
Q ss_pred chhhhhhhcCCCCCCC-CcC-CCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccc--cccCCCccCCCcccCC
Q 009181 315 FVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGS 388 (541)
Q Consensus 315 ~~~~f~~~~g~~~p~~-~~~-~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gs 388 (541)
+... |...+++ .+. ..+.+++..++||+ +++.| +|+++.+ +++........ ..|.
T Consensus 208 ~~~~-----g~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~------------ 268 (386)
T 1u08_A 208 INFS-----QQGHASVLAHPQLRERAVAVSSFGKT-YHMTGWKVGYCVAP-APISAEIRKVHQYLTFS------------ 268 (386)
T ss_dssp CBCC-----SSCCCCGGGSHHHHTTEEEEEEHHHH-TTCGGGCCEEEECC-HHHHHHHHHHHHHHTSS------------
T ss_pred cccC-----CCCCcChhcccCccCcEEEEecchhh-cCCcccceEEEEcC-HHHHHHHHHHHHhhccC------------
Confidence 6531 1101112 111 24679999999999 56555 8987765 43332211100 0110
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC---CCHHHHHHHHH-hCC
Q 009181 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV---VDIFEVNDIMS-SKG 464 (541)
Q Consensus 389 r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~---~~~~~l~~~l~-~~G 464 (541)
.+....+++.++++. +.+++++..++..++++++.+.|++. ++++..+....++++.+++ .+..++.+.|. ++|
T Consensus 269 ~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~g 346 (386)
T 1u08_A 269 VNTPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHG 346 (386)
T ss_dssp CCHHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSC
T ss_pred CChHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 011112233334432 25678888999999999999999987 8887755555678888765 36788888876 679
Q ss_pred ceecc---C----CCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009181 465 WHLNP---L----QRPNSIHICVTLQHVAVVDVFLRDLRE 497 (541)
Q Consensus 465 ~~~~~---~----~~~~~iRi~~~~~~~e~id~~i~~L~~ 497 (541)
+.+.. + ..++++|+|++. +.+++++++++|++
T Consensus 347 i~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 347 VAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp EECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred EEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 76642 2 135789999985 56899999988864
No 71
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.94 E-value=9.2e-26 Score=232.30 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=218.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchH
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~ 239 (541)
+|...++..++++++.+++.+.+|.+ +++ + ++|+||++|+..+++++.+ +| ++|+++.++|+++
T Consensus 61 ~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~p~~~~~ 126 (370)
T 2z61_A 61 HYTDSRGILELREKISELYKDKYKADIIPDN----I--IITGGSSLGLFFALSSIID-----DG---DEVLIQNPCYPCY 126 (370)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHSSCCCCGGG----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEESSCCTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCChhh----E--EECCChHHHHHHHHHHhcC-----CC---CEEEEeCCCchhH
Confidence 34434566788888888888877754 343 5 9999999999999998742 56 8999999999999
Q ss_pred HHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 240 ~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
...++..|++++.+| +|+++|++++++++++|++++|+||+|.+.|++ |.++|++||+++++|++|+.+...
T Consensus 127 ~~~~~~~g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~- 198 (370)
T 2z61_A 127 KNFIRFLGAKPVFCD------FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYE- 198 (370)
T ss_dssp HHHHHHTTCEEEEEC------SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSS-
T ss_pred HHHHHHcCCEEEEeC------CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccC-
Confidence 999999999999998 699999999998999999999999999999999 999999999999999999876541
Q ss_pred hhhcCCCCCCCCc-CCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHH
Q 009181 320 AKKLGYPIPPFDF-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG 396 (541)
Q Consensus 320 ~~~~g~~~p~~~~-~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~ 396 (541)
|...+...+ ...+.|++..++||+ +++.| +|+++.++ ++..........+.. +....+
T Consensus 199 ----g~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~ 259 (370)
T 2z61_A 199 ----GKCYSAIEFDENLEKTILINGFSKL-YAMTGWRIGYVISND-EIIEAILKLQQNLFI-------------SAPTIS 259 (370)
T ss_dssp ----SCCCCGGGTCTTCSSEEEEEESTTT-TTCGGGCCEEEECCH-HHHHHHHHHHHHHTS-------------SSCHHH
T ss_pred ----CCCcCHHHccCCCCcEEEEecChhc-cCCccceEEEEEECH-HHHHHHHHHHhhccc-------------CCCHHH
Confidence 110111122 135679999999999 56556 89866654 443322111111110 011224
Q ss_pred HHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHH-hCCceecc---
Q 009181 397 AWAALMSL---GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMS-SKGWHLNP--- 469 (541)
Q Consensus 397 ~~~al~~l---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~-~~G~~~~~--- 469 (541)
++++...+ +.+++++..+++.++++++.+.|+++ ++++..+....++++..++ +..++.+.|. ++|+.+..
T Consensus 260 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~ 337 (370)
T 2z61_A 260 QYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGE-DGREFAYKLLKEKFVALTPGIG 337 (370)
T ss_dssp HHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCSS-CHHHHHHHHHHHHCEECEEGGG
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecCC-CHHHHHHHHHHhCCEEEeCchh
Confidence 44444444 45677888999999999999999988 8877654434455556655 7788999987 78976643
Q ss_pred CC--CCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 470 LQ--RPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 470 ~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
++ .++++|++++ .+.+++++++++|+++++
T Consensus 338 f~~~~~~~~Ri~~~-~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 338 FGSKGKNYIRISYA-NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp GCGGGSSBEEEECC-SCHHHHHHHHHHHHHHHC
T ss_pred hCCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHh
Confidence 22 2578999999 466999999999998763
No 72
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.94 E-value=3.5e-25 Score=227.47 Aligned_cols=286 Identities=14% Similarity=0.112 Sum_probs=216.6
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.++++ + ++|+|+|+++..+++++.+ +| ++|+++.++|+++...++..|++++.+|
T Consensus 69 ~lr~~la~~~~~~~~~----v--~~~~g~~~a~~~~~~~l~~-----~g---d~vl~~~~~~~~~~~~~~~~g~~~~~v~ 134 (365)
T 3get_A 69 ELKSTLAQKYKVQNEN----I--IIGAGSDQVIEFAIHSKLN-----SK---NAFLQAGVTFAMYEIYAKQCGAKCYKTQ 134 (365)
T ss_dssp HHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEECSSCCTHHHHHHHHHTCEEEECS
T ss_pred HHHHHHHHHhCCCcce----E--EECCCHHHHHHHHHHHHhC-----CC---CEEEEeCCChHHHHHHHHHcCCEEEEEe
Confidence 5666888999987665 6 9999999999999998743 66 8999999999999999999999999999
Q ss_pred C-CCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHH--HcCCEEEEeCCcccchh--hhhhhcCCCCCC
Q 009181 255 V-DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL--SHGTCLHVDLCLGGFVL--PFAKKLGYPIPP 329 (541)
Q Consensus 255 ~-~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~--~~~i~lhvD~a~gg~~~--~f~~~~g~~~p~ 329 (541)
+ ++++ +|+++|++++++++++|++++|+||+|.+.|++++.++++ ++|+++++|++|+.+.+ . .... .+.
T Consensus 135 ~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~--~~~~--~~~ 209 (365)
T 3get_A 135 SITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKD--SKKH--LEP 209 (365)
T ss_dssp SSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHC--GGGC--CCH
T ss_pred cCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccC--Cccc--ccH
Confidence 8 6688 9999999999999999999999999999999999888888 77999999999987652 1 1000 000
Q ss_pred CC-cCCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHH-hH
Q 009181 330 FD-FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQ 406 (541)
Q Consensus 330 ~~-~~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~l-g~ 406 (541)
.. ....+.+++..++||++. .+.++|+++. ++++..........|. ....+++++...+ ..
T Consensus 210 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~ 273 (365)
T 3get_A 210 CELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAPFN---------------VSNLALKAAVAAMDDD 273 (365)
T ss_dssp HHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCTTC---------------SCHHHHHHHHHHHTCH
T ss_pred hHHhccCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCCCC---------------cCHHHHHHHHHHhCCH
Confidence 10 012345788889999942 4445888776 5544432221111111 1122444444334 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCC--CCeEEEEecCCC
Q 009181 407 EGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQR--PNSIHICVTLQH 484 (541)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~--~~~iRi~~~~~~ 484 (541)
+++++..++..++++++.+.|+++ ++++. ++..+++++.+++.+..++.+.|.++|+.+..... ++++|++++ +
T Consensus 274 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~--~ 349 (365)
T 3get_A 274 EFTEKTLENNFSQMELYKEFAKKH-NIKII-DSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG--T 349 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC--C
Confidence 678889999999999999999998 88875 45566778887655788999999999987643211 679999987 5
Q ss_pred HHHHHHHHHHHHHHH
Q 009181 485 VAVVDVFLRDLRESV 499 (541)
Q Consensus 485 ~e~id~~i~~L~~~~ 499 (541)
.++++++++.|++++
T Consensus 350 ~~~i~~l~~~l~~~l 364 (365)
T 3get_A 350 SYENEKFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 699999999999875
No 73
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.94 E-value=2.7e-25 Score=235.21 Aligned_cols=309 Identities=13% Similarity=0.103 Sum_probs=225.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCC-CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~-~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ 240 (541)
+|...++..++++.+.+++.+.+|. ++++ + ++|+|+++|+..+++++.+ +| ++|+++.++|+++.
T Consensus 113 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~----v--~~t~G~~~al~~~~~~l~~-----~G---d~Vlv~~p~y~~~~ 178 (448)
T 3aow_A 113 QYGTTKGFTPLRETLMKWLGKRYGISQDND----I--MITSGSQQALDLIGRVFLN-----PG---DIVVVEAPTYLAAL 178 (448)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCTTSE----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHhcCcCChhh----E--EEeCcHHHHHHHHHHHHcC-----CC---CEEEEeCCChHHHH
Confidence 3433456677888777787777798 3443 6 9999999999999999853 66 89999999999999
Q ss_pred HHHhhcCCeEEEeeCCCCCccCHHHHHHhhc----c--CceEE-EeecCCCCCccccC---HHHHHHHHHHcCCEEEEeC
Q 009181 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYIN----R--NTVLI-VGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL 310 (541)
Q Consensus 241 ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~----~--~t~~v-v~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~ 310 (541)
.+++..|++++.+|+++++ +|+++|+++++ + ++++| ++++|+||+|.+.+ +++|.++|++||+++++|+
T Consensus 179 ~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De 257 (448)
T 3aow_A 179 QAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDD 257 (448)
T ss_dssp HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 9999999999999998765 99999999998 6 78887 57899999999977 5699999999999999999
Q ss_pred CcccchhhhhhhcCCCCCCC-CcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCC
Q 009181 311 CLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (541)
Q Consensus 311 a~gg~~~~f~~~~g~~~p~~-~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr 389 (541)
+|+.+.+. |...+.+ .+...+.++...+++|++..+..+|+++.+ +++..........+.. +
T Consensus 258 ~y~~~~~~-----g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~-~~l~~~l~~~~~~~~~---------~-- 320 (448)
T 3aow_A 258 PYGELRYS-----GNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGD-PGIIRKMEIAKQSTDL---------C-- 320 (448)
T ss_dssp SCTTCBCS-----SCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEEC-HHHHHHHHHHHHHHHS---------S--
T ss_pred CCccccCC-----CCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeC-HHHHHHHHHHHHHhcC---------C--
Confidence 99876541 1111112 233345677888889995422238987775 4443322111111100 0
Q ss_pred CCchHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHhhc-CC-CeEEecCCCeeEEEEecCC-CCHHHHHHHHHh
Q 009181 390 PGGLIAGAWAALMSLG----QEGYLENTKAIMEVSESIQKGIKE-IP-ELFIIGRPDMTIVAFGSDV-VDIFEVNDIMSS 462 (541)
Q Consensus 390 ~~~~~a~~~~al~~lg----~~g~~~~~~~~~~~a~~l~~~L~~-~~-~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~~ 462 (541)
....+++++...+. .+.+++..+++.++++++.+.|++ +| ++++..+....++++.++. .+..++.+.|.+
T Consensus 321 --~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~ 398 (448)
T 3aow_A 321 --TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIK 398 (448)
T ss_dssp --CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence 01224444444442 345667777778899999999987 67 6887765556777888764 478899999999
Q ss_pred CCceecc---C----CCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 463 KGWHLNP---L----QRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 463 ~G~~~~~---~----~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
+|+.+.. + ..++++|+|++..+.+++++++++|++++++..+
T Consensus 399 ~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 399 KGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp TTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHHC
T ss_pred CCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9976543 2 1357899999875569999999999999987643
No 74
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.94 E-value=5.8e-25 Score=225.48 Aligned_cols=280 Identities=18% Similarity=0.181 Sum_probs=210.6
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.++++ + ++|+|+++++..+++++.+ +| +++|+++.++|+++..+++..|++++.+|
T Consensus 62 ~lr~~la~~~~~~~~~----v--~~~~G~~~ai~~~~~~~~~-----~g--~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~ 128 (356)
T 1fg7_A 62 AVIENYAQYAGVKPEQ----V--LVSRGADEGIELLIRAFCE-----PG--KDAILYCPPTYGMYSVSAETIGVECRTVP 128 (356)
T ss_dssp HHHHHHHHHHTSCGGG----E--EEESHHHHHHHHHHHHHCC-----TT--TCEEEECSSSCTHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHhCCChHH----E--EEcCCHHHHHHHHHHHHhC-----CC--CCEEEEeCCChHHHHHHHHHcCCEEEEee
Confidence 4666888888988765 6 8999999999999998752 33 26899999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHH---HHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCC
Q 009181 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL---GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (541)
Q Consensus 255 ~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I---~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~ 331 (541)
.++++.+|+++++++++ ++++|++++|+||||.+.|.+++ +++|+ +|+++++|++|+.+... .+...
T Consensus 129 ~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~--------~~~~~ 198 (356)
T 1fg7_A 129 TLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ--------ASLAG 198 (356)
T ss_dssp CCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG--------GCSGG
T ss_pred CCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC--------CcHHH
Confidence 98888899999999998 89999999999999999886555 55555 89999999999876510 00111
Q ss_pred c-CCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHH
Q 009181 332 F-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (541)
Q Consensus 332 ~-~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g 408 (541)
. ...+.+++..+++|+ +++.| +|+++. ++++..........| +....++.++...+...+
T Consensus 199 ~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~-~~~~~~~l~~~~~~~---------------~~~~~~~~a~~~~l~~~~ 261 (356)
T 1fg7_A 199 WLAEYPHLAILRTLSKA-FALAGLRCGFTLA-NEEVINLLMKVIAPY---------------PLSTPVADIAAQALSPQG 261 (356)
T ss_dssp GTTTCTTEEEEEESSST-TCCGGGCCEEEEE-CHHHHHHHHHHSCSS---------------CSCHHHHHHHHHHTSHHH
T ss_pred HHhhCCCEEEEecchHh-hcCchhhhEEEEe-CHHHHHHHHHhcCCC---------------CCCHHHHHHHHHHhcCcc
Confidence 1 223567888899998 55455 798776 444433221111111 111346666666665544
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccC----CCCCeEEEEec
Q 009181 409 ---YLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPL----QRPNSIHICVT 481 (541)
Q Consensus 409 ---~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~----~~~~~iRi~~~ 481 (541)
+++..++..++++++.+.|++++++....++..++++++.+ +..++.+.|.++|+.+... +.++++|++++
T Consensus 262 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~ 339 (356)
T 1fg7_A 262 IVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG 339 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC
Confidence 67888889999999999999987654455566777788775 6788999999999876542 23468999997
Q ss_pred CCCHHHHHHHHHHHHHH
Q 009181 482 LQHVAVVDVFLRDLRES 498 (541)
Q Consensus 482 ~~~~e~id~~i~~L~~~ 498 (541)
+.+++++++++|+++
T Consensus 340 --~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 340 --TREESQRVIDALRAE 354 (356)
T ss_dssp --CHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHhh
Confidence 468999999988753
No 75
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.94 E-value=5.5e-26 Score=238.46 Aligned_cols=302 Identities=15% Similarity=0.135 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcC
Q 009181 170 ARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~--~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G 247 (541)
.++++++.+++++.+|. ++++ + ++|+|+++|+..+++++.. +| ++|+++.+.|+++..+++..|
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~----v--~~~~g~~ea~~~a~~~~~~-----~g---d~Vi~~~~~y~~~~~~~~~~g 164 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKED----I--LFIDGVVPAISIALQAFSE-----KG---DAVLINSPVYYPFARTIRLND 164 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHSC-----TE---EEEEEEESCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHH----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEECCCCcHHHHHHHHHCC
Confidence 67888899999999994 4443 6 8999999999999999853 55 889999999999999999999
Q ss_pred CeEEEeeCC-C--CCccCHHHHHHhhc-cCceEEEeecCCCCCccc---cCHHHHHHHHHHcCCEEEEeCCcccchhhhh
Q 009181 248 IKLWRVPVD-K--EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (541)
Q Consensus 248 ~~v~~v~~~-~--~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~i---d~i~~I~~la~~~~i~lhvD~a~gg~~~~f~ 320 (541)
.+++.+|++ + ++.+|+++|+++++ +++++|++++|+||+|.+ +++++|+++|++||++||+|++|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-- 242 (421)
T 3l8a_A 165 HRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALF-- 242 (421)
T ss_dssp EEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--
T ss_pred CEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccC--
Confidence 999999985 2 45799999999998 789999999999999999 67999999999999999999999877642
Q ss_pred hhcCCCCC--CCCcCCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHH
Q 009181 321 KKLGYPIP--PFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397 (541)
Q Consensus 321 ~~~g~~~p--~~~~~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~ 397 (541)
.... .+ .++....+.+....+++|.+. ++.++|+++.+++++..........+.. ++-.....+++
T Consensus 243 -g~~~-~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~---------~~~n~~~~~a~ 311 (421)
T 3l8a_A 243 -GNTH-HSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQ---------HEVPTVGMIAT 311 (421)
T ss_dssp -TCCC-CCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTC---------SCCCHHHHHHH
T ss_pred -CCCC-ccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhccc---------CCCCHHHHHHH
Confidence 1000 11 111122356788889999943 4455798877756554332111111100 00000112344
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC--CCHHHHHHHHHh-CCceecc---C-
Q 009181 398 WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV--VDIFEVNDIMSS-KGWHLNP---L- 470 (541)
Q Consensus 398 ~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~--~~~~~l~~~l~~-~G~~~~~---~- 470 (541)
.++++ .+.+.+++..++..++++++.+.|++.|++++..+....++++.+.. .+..++.+.|.+ .|+.+.. +
T Consensus 312 ~aal~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~ 390 (421)
T 3l8a_A 312 QAAFQ-YGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFG 390 (421)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGC
T ss_pred HHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhC
Confidence 44444 25667889999999999999999998889998865555555566653 467788888874 5876643 2
Q ss_pred -CCCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 471 -QRPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 471 -~~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
..++++|++++. +.+++++++++|+++++
T Consensus 391 ~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 391 KEGKYFARLNVAT-PKNTVQEALSRIISVFG 420 (421)
T ss_dssp GGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 224799999983 56999999999998764
No 76
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.94 E-value=5.5e-26 Score=237.56 Aligned_cols=307 Identities=16% Similarity=0.134 Sum_probs=225.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCC--CC-CCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~--~~-~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s 238 (541)
.|...++..++++++.+++.+.+|.+ ++ + + ++|+|||+|+..+++++.+ +| ++|+++.++|++
T Consensus 57 ~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~----v--~~t~g~~~al~~~~~~~~~-----~g---d~Vl~~~~~y~~ 122 (411)
T 2o0r_A 57 QYPPGPGSAPLRRAIAAQRRRHFGVDYDPETE----V--LVTVGATEAIAAAVLGLVE-----PG---SEVLLIEPFYDS 122 (411)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTS----E--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCce----E--EEeCCHHHHHHHHHHHhcC-----CC---CEEEEeCCCcHh
Confidence 34444556788998999999888864 43 4 6 8999999999999998742 56 899999999999
Q ss_pred HHHHHhhcCCeEEEeeCCC---CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCc
Q 009181 239 YDKAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL 312 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~---~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~ 312 (541)
+..+++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|+++|++||+++++|++|
T Consensus 123 ~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~ 202 (411)
T 2o0r_A 123 YSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVY 202 (411)
T ss_dssp HHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 9999999999999999875 4679999999999999999999999999999976 589999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCC-CcC-CCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCC
Q 009181 313 GGFVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388 (541)
Q Consensus 313 gg~~~~f~~~~g~~~p~~-~~~-~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 388 (541)
+++... |...+++ .+. ..+.|+++.++||+ +++.| +|+++.+ +++............ .+
T Consensus 203 ~~~~~~-----g~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~----------~~ 265 (411)
T 2o0r_A 203 EHLVFD-----HARHLPLAGFDGMAERTITISSAAKM-FNCTGWKIGWACGP-AELIAGVRAAKQYLS----------YV 265 (411)
T ss_dssp TTCBCT-----TCCCCCGGGSTTTGGGEEEEEEHHHH-TTCTTTCEEEEECC-HHHHHHHHHHHHHHT----------SC
T ss_pred cccccC-----CCCCcChhhccCCCCCEEEEeechhh-cCCccceEEEEeeC-HHHHHHHHHHHhhcc----------CC
Confidence 876541 1101111 111 25679999999998 56666 8987664 444332111110000 00
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC---CCHHHHHHHHH-hCC
Q 009181 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV---VDIFEVNDIMS-SKG 464 (541)
Q Consensus 389 r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~---~~~~~l~~~l~-~~G 464 (541)
.+....+++.++++. +.+++++..++..++++++.+.|++. ++++..+....++++.+++ .+..++.+.|. ++|
T Consensus 266 ~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~g 343 (411)
T 2o0r_A 266 GGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVG 343 (411)
T ss_dssp CCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 111122344445543 36678889999999999999999987 8887755444577777754 46778888876 678
Q ss_pred ceecc---C-C------------CCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 465 WHLNP---L-Q------------RPNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 465 ~~~~~---~-~------------~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
+.+.. + . .++++|+|++. +.+++++++++|++++++.
T Consensus 344 i~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 344 VAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp EECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHHHHHHHHGGGGC--
T ss_pred EEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHhcc
Confidence 76532 1 1 24689999975 5689999999999876543
No 77
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.94 E-value=4.4e-25 Score=230.86 Aligned_cols=317 Identities=16% Similarity=0.126 Sum_probs=221.7
Q ss_pred cccchHHHHHHHHHHHHHHHHh------C--CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCC
Q 009181 163 LDIFQSVARFEAEVIAMTAALL------G--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234 (541)
Q Consensus 163 ~~~~~~~~~~e~ev~~~la~l~------g--~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~ 234 (541)
|...++..++++.+.+++.+.+ | .++++ + ++|+|+++|+.++++++.+ +| ++|+++.+
T Consensus 71 y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~----v--~~~~g~~~al~~~~~~l~~-----~g---d~vl~~~p 136 (416)
T 1bw0_A 71 YFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN----V--VLCSGGSHGILMAITAICD-----AG---DYALVPQP 136 (416)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEES
T ss_pred cCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcce----E--EEeCChHHHHHHHHHHhCC-----CC---CEEEEcCC
Confidence 3333455667776666666322 2 33443 6 9999999999999998742 56 89999999
Q ss_pred ccchHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEe
Q 009181 235 AHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD 309 (541)
Q Consensus 235 ~h~s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD 309 (541)
+|+++..+++..|++++.+|+++ ++.+|+++|+++++++++++++++|+||+|.+.| +++|+++|++||+++|+|
T Consensus 137 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 216 (416)
T 1bw0_A 137 GFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSD 216 (416)
T ss_dssp CCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999999865 4779999999999989999999999999999998 999999999999999999
Q ss_pred CCcccchhhhhhhc---CCCCCCCCcCCCCceEEEeCCCCCCC-CCCCceEEEEecc-cccccccccccccCCCccCCCc
Q 009181 310 LCLGGFVLPFAKKL---GYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNR-EIRKHQFVAVTEWSGGLYVSPT 384 (541)
Q Consensus 310 ~a~gg~~~~f~~~~---g~~~p~~~~~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~ 384 (541)
++|+.+... ... .. .+...+...+.+++..+++|++. .+..+|+++.+++ ++..........+...
T Consensus 217 e~~~~~~~~--g~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~------ 287 (416)
T 1bw0_A 217 EIYAGMVFK--GKDPNATF-TSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGML------ 287 (416)
T ss_dssp CTTTTCBCC--SSCTTCCC-CCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHH------
T ss_pred ccccccccC--CCCCCCCc-cCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhcc------
Confidence 999876431 100 10 11111222233567778999932 2234898888775 3322111000000000
Q ss_pred ccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC------CCHHHHHH
Q 009181 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV------VDIFEVND 458 (541)
Q Consensus 385 ~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~------~~~~~l~~ 458 (541)
..+-+....+++.++++..+.+++++..++..++++++.+.|+++|++++..+....++++..+. .+..++.+
T Consensus 288 -~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (416)
T 1bw0_A 288 -VCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFE 366 (416)
T ss_dssp -HTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHH
T ss_pred -ccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHH
Confidence 00001111223333443334678899999999999999999999889987755555666666542 36778888
Q ss_pred HH-HhCCceecc---CCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 459 IM-SSKGWHLNP---LQRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 459 ~l-~~~G~~~~~---~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
.| .++|+.+.. ++.++++|+|++ .+.+++++++++|++++++.++
T Consensus 367 ~l~~~~gi~v~~g~~f~~~~~iRis~~-~~~e~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 367 KLLEEENVQVLPGTIFHAPGFTRLTTT-RPVEVYREAVERIKAFCQRHAA 415 (416)
T ss_dssp HHHHHHCEECEEGGGGTCTTEEEEECC-SCHHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHCCEEEecccccCCCCeEEEEec-CCHHHHHHHHHHHHHHHHHhhc
Confidence 87 478976643 334679999996 3568999999999999877543
No 78
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.94 E-value=2.7e-25 Score=231.07 Aligned_cols=309 Identities=15% Similarity=0.128 Sum_probs=223.4
Q ss_pred cccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH
Q 009181 163 LDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (541)
Q Consensus 163 ~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ 240 (541)
|...++..++++++.+++.+.+|.+ +++ + ++|+|+|+|+..+++++.+ +| +++|+++.++|+++.
T Consensus 72 y~~~~g~~~lr~~la~~l~~~~g~~~~~~~----i--~~~~g~~~al~~~~~~l~~-----~g--~d~vl~~~p~~~~~~ 138 (398)
T 3ele_A 72 YTSAQGDVETRAAIAEFLNNTHGTHFNADN----L--YMTMGAAASLSICFRALTS-----DA--YDEFITIAPYFPEYK 138 (398)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESSHHHHHHHHHHHHCC-----ST--TCEEEEESSCCTHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCChHH----E--EEccCHHHHHHHHHHHHcC-----CC--CCEEEEeCCCchhhH
Confidence 4344566788888999999998854 443 6 8999999999999998842 33 268999999999999
Q ss_pred HHHhhcCCeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHH------cCCEEEEeC
Q 009181 241 KAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALS------HGTCLHVDL 310 (541)
Q Consensus 241 ka~~~~G~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~------~~i~lhvD~ 310 (541)
..++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|+++|++ ||+++++|+
T Consensus 139 ~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De 218 (398)
T 3ele_A 139 VFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADE 218 (398)
T ss_dssp HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEec
Confidence 99999999999999985 6789999999999999999999999999999988 6778899999 999999999
Q ss_pred CcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccc-cccccCCCccCCCcccCC
Q 009181 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFV-AVTEWSGGLYVSPTVAGS 388 (541)
Q Consensus 311 a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs 388 (541)
+|+.+... |...| ......+.+++..+++|.+. ++.++|+++.+++........ ....+. . ...
T Consensus 219 ~~~~~~~~-----~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~---~-----~~~ 284 (398)
T 3ele_A 219 PYREIVYD-----GIKVP-FVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAG---R-----ALG 284 (398)
T ss_dssp TTTTCBCT-----TCCCC-CGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHH---H-----HTT
T ss_pred cccccccC-----CCCcC-ChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHh---h-----hcc
Confidence 99876541 11111 22234456788889999953 455689877665422100000 000000 0 000
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceec
Q 009181 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLN 468 (541)
Q Consensus 389 r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~ 468 (541)
.......+++++...+... ...++..++++++.+.|+++ ++++..+....++++..+..+..++.+.|.++|+.+.
T Consensus 285 ~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~ 360 (398)
T 3ele_A 285 YVCAPSLFQKMIVKCQGAT---GDINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIV 360 (398)
T ss_dssp CCCSCHHHHHHHTTCTTCC---CCHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECE
T ss_pred ccCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEe
Confidence 0111123444444333211 13566777888899999887 7877765555557788776678899999999998764
Q ss_pred c---CCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 469 P---LQRPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 469 ~---~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
. ++.++++|++++ .+.+++++++++|++++++++
T Consensus 361 ~g~~~~~~~~iRis~~-~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 361 AADGFGCPGWVRISYC-VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp ESGGGTCTTEEEEECC-SCHHHHHHHHHHHHHHHHHHC
T ss_pred CccccCCCCeEEEEec-CCHHHHHHHHHHHHHHHHHhh
Confidence 3 344689999997 466999999999999998764
No 79
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.94 E-value=6.8e-26 Score=235.63 Aligned_cols=294 Identities=15% Similarity=0.122 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcC
Q 009181 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (541)
Q Consensus 168 ~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G 247 (541)
+..++..++++++++++|.+ + + ++|+|||+|+..+++++.+ +| ++|+++.+.|+++..+++..|
T Consensus 85 g~~~~~~~l~~~la~~~g~~--~----v--~~~~ggt~a~~~~~~~~~~-----~g---d~V~~~~p~~~~~~~~~~~~g 148 (398)
T 3a2b_A 85 GTLDIHVELEEKLSAYVGKE--A----A--ILFSTGFQSNLGPLSCLMG-----RN---DYILLDERDHASIIDGSRLSF 148 (398)
T ss_dssp CCCHHHHHHHHHHHHHHTCS--E----E--EEESSHHHHHHHHHHHSSC-----TT---CEEEEETTCCHHHHHHHHHSS
T ss_pred CCcHHHHHHHHHHHHHhCCC--c----E--EEECCHHHHHHHHHHHHhC-----CC---CEEEECCccCHHHHHHHHHcC
Confidence 44566778889999999974 3 4 8999999999999998743 56 899999999999999999999
Q ss_pred CeEEEeeCCCCCccCHHHHHHhhcc----CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 248 IKLWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 248 ~~v~~v~~~~~~~~d~~~Le~~i~~----~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
++++.+|+ +|+++|++++++ ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.+. ..
T Consensus 149 ~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~---~~ 220 (398)
T 3a2b_A 149 SKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIG---HK 220 (398)
T ss_dssp SEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSS---GG
T ss_pred CceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccC---CC
Confidence 99999987 589999999987 7999999999999999999999999999999999999999765431 11
Q ss_pred CCCCCCCCc-C-CCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 324 GYPIPPFDF-S-VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 324 g~~~p~~~~-~-~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
+. +..+. . ..++|+++.++||+ ++|.| |+++.+ +++..........|... ++......+++.+++
T Consensus 221 ~~--~~~~~~~~~~~~di~~~s~sK~-~~~~G-G~~~~~-~~~~~~l~~~~~~~~~~--------~~~~~~~~a~~~~~l 287 (398)
T 3a2b_A 221 GA--GTASHFGLNDDVDLIMGTFSKS-LASLG-GFVAGD-ADVIDFLKHNARSVMFS--------ASMTPASVASTLKAL 287 (398)
T ss_dssp GC--CHHHHHTCGGGCSEEEEESSST-TCSSC-EEEEEC-HHHHHHHHHHCHHHHSS--------BCCCHHHHHHHHHHH
T ss_pred CC--chHhhcCCCcCCeEEEeccccc-ccCCC-cEEEeC-HHHHHHHHHhcccceec--------CCCCHHHHHHHHHHH
Confidence 11 00110 1 12468999999999 56877 876664 44433221111111110 011111122344555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC-CCHHHHHHHHHhCCceeccCC------CCC
Q 009181 402 MSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV-VDIFEVNDIMSSKGWHLNPLQ------RPN 474 (541)
Q Consensus 402 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~~~G~~~~~~~------~~~ 474 (541)
+.+ +..++..++..++++++.+.|+++ ++++.. +...++++..++ .+..++.+.|.++|+.+.... .++
T Consensus 288 ~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~ 363 (398)
T 3a2b_A 288 EII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLGA-TESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEES 363 (398)
T ss_dssp HHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBCS-CCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGC
T ss_pred HHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcCC-CCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCc
Confidence 543 335678889999999999999988 787663 456788888753 256789999999998765432 136
Q ss_pred eEEEEecCCC-HHHHHHHHHHHHHHHHHH
Q 009181 475 SIHICVTLQH-VAVVDVFLRDLRESVETV 502 (541)
Q Consensus 475 ~iRi~~~~~~-~e~id~~i~~L~~~~~~l 502 (541)
++|++++..+ .+++++++++|+++++++
T Consensus 364 ~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 364 LIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999754 499999999999998765
No 80
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.94 E-value=3.2e-25 Score=228.85 Aligned_cols=319 Identities=14% Similarity=0.110 Sum_probs=227.3
Q ss_pred HHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhC--CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC
Q 009181 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (541)
Q Consensus 147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g--~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi 224 (541)
.+.+++...+.....++... ..++++++.+++++.+| .++++ + ++|+|||+|+..+++++.+ +|
T Consensus 41 ~v~~a~~~~~~~~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~l~~-----~g- 106 (383)
T 3kax_A 41 PIQTALKKRIEHPIFGYTLP--PENIGDIICNWTKKQYNWDIQKEW----I--VFSAGIVPALSTSIQAFTK-----EN- 106 (383)
T ss_dssp HHHHHHHHHHHSCCCCCCCC--CTTHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHCC-----TT-
T ss_pred HHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCChhh----E--EEcCCHHHHHHHHHHHhCC-----CC-
Confidence 33444444443333333222 45778889999999999 44554 6 8999999999999998743 56
Q ss_pred CCCeEEecCCccchHHHHHhhcCCeEEEeeCCC---CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHH
Q 009181 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGEL 298 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~---~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~l 298 (541)
++|+++.++|+++...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|.++
T Consensus 107 --d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~ 184 (383)
T 3kax_A 107 --ESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLGSL 184 (383)
T ss_dssp --CEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHHHHHH
T ss_pred --CEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCCCCCCCcCcCHHHHHHHHHH
Confidence 8999999999999999999999999999864 3569999999999889999999999999999977 5667777
Q ss_pred HHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCC---CCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccc
Q 009181 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV---QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTE 374 (541)
Q Consensus 299 a~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~---~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~ 374 (541)
|++||+++|+|++|+++... |....++.... .+.+++..++||.+. ++.++|+++..++++..........
T Consensus 185 ~~~~~~~li~De~~~~~~~~-----g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 259 (383)
T 3kax_A 185 CTKYNVIVVADEIHSDIIYA-----DHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYR 259 (383)
T ss_dssp HHHHTCEEEEECTTTTCBCT-----TCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEccccccccC-----CCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhh
Confidence 99999999999999876541 11000111111 255688889999843 4445788776565544322111111
Q ss_pred cCCCccCCCcccCCCCCchHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecCC-
Q 009181 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSDV- 450 (541)
Q Consensus 375 ~~~~~~~~~~~~gsr~~~~~a~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~~- 450 (541)
|.. ......++.++...+ +.+.+++..++..++++++.+.|++ +|++++..+....++++.++.
T Consensus 260 ~~~------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (383)
T 3kax_A 260 QGF------------HGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLLWIDCSAL 327 (383)
T ss_dssp TTC------------CCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSBSSEEEEECGGG
T ss_pred ccc------------CCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCceEEEEEEcccc
Confidence 110 011122444444434 3566888899999999999999998 899998755444444566553
Q ss_pred -CCHHHHHHHHH-hCCceecc---CC--CCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 451 -VDIFEVNDIMS-SKGWHLNP---LQ--RPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 451 -~~~~~l~~~l~-~~G~~~~~---~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
.+..++.+.|. ++|+.+.. ++ .++++|++++. +.+++++++++|++++
T Consensus 328 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 328 NLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGC-PRSVLEEILNRLRHTF 382 (383)
T ss_dssp CCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSS-CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 47889999997 68977643 22 24799999984 5699999999998875
No 81
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=1e-25 Score=236.70 Aligned_cols=310 Identities=14% Similarity=0.095 Sum_probs=224.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCC---CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGN---KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~---~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s 238 (541)
+|...++..++++++.+++.+.+|. ++++ + ++|+|+++++..+++++.+ +| ++|+++.++|++
T Consensus 80 ~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~----v--~~t~G~~~al~~~~~~l~~-----~g---d~Vl~~~p~y~~ 145 (425)
T 1vp4_A 80 QYSTTEGDPVLKQQILKLLERMYGITGLDEDN----L--IFTVGSQQALDLIGKLFLD-----DE---SYCVLDDPAYLG 145 (425)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGG----E--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEEESCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCCccc----E--EEeccHHHHHHHHHHHhCC-----CC---CEEEEeCCCcHH
Confidence 3333445678888888888777784 4444 6 9999999999999998742 56 899999999999
Q ss_pred HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhcc--------CceEE-EeecCCCCCccccC---HHHHHHHHHHcCCEE
Q 009181 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR--------NTVLI-VGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~--------~t~~v-v~~~~~~~~G~id~---i~~I~~la~~~~i~l 306 (541)
+...++..|++++.+|+++++ +|+++|++++++ ++++| ++++|+||+|.+.| +++|+++|++||+++
T Consensus 146 ~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~l 224 (425)
T 1vp4_A 146 AINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFI 224 (425)
T ss_dssp HHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 999999999999999997765 999999999976 78887 57999999999976 678999999999999
Q ss_pred EEeCCcccchhhhhhhcCCCCCCC-CcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcc
Q 009181 307 HVDLCLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTV 385 (541)
Q Consensus 307 hvD~a~gg~~~~f~~~~g~~~p~~-~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (541)
++|++|+++... |...+.+ .+...+.+++..+++|++.++..+|+++.+ +++..........+..+
T Consensus 225 i~De~~~~~~~~-----g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~------- 291 (425)
T 1vp4_A 225 VEDDPYGALRYE-----GETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGS-KEFIRKIVQAKQSADLC------- 291 (425)
T ss_dssp EEECSSTTCBCS-----SCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECC-HHHHHHHHHHHHHHHSS-------
T ss_pred EEECCCccccCC-----CCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeC-HHHHHHHHHHhhhhcCC-------
Confidence 999999876531 1100111 112235578888999995422337987765 44433221111111000
Q ss_pred cCCCCCchHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHhhc-CC---CeEEecCCCeeEEEEecCC-CCHHHH
Q 009181 386 AGSRPGGLIAGAWAALMSLG----QEGYLENTKAIMEVSESIQKGIKE-IP---ELFIIGRPDMTIVAFGSDV-VDIFEV 456 (541)
Q Consensus 386 ~gsr~~~~~a~~~~al~~lg----~~g~~~~~~~~~~~a~~l~~~L~~-~~---~~~v~~~~~~~~v~f~~~~-~~~~~l 456 (541)
. ...+++++...+. .+.+++..++..++++++.+.|++ .| ++++..+....++++.+++ .+..++
T Consensus 292 -~-----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l 365 (425)
T 1vp4_A 292 -S-----PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEM 365 (425)
T ss_dssp -C-----CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTT
T ss_pred -C-----CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHH
Confidence 0 1234555554443 345677788888899999999987 45 6888766556678888763 356788
Q ss_pred HHHHHhCCceecc---CC----CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHcC
Q 009181 457 NDIMSSKGWHLNP---LQ----RPNSIHICVTLQHVAVVDVFLRDLRESVETVKQN 505 (541)
Q Consensus 457 ~~~l~~~G~~~~~---~~----~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~~ 505 (541)
.+.|.++|+.+.. +. .++++|++++..+.+++++++++|+++++++.++
T Consensus 366 ~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 366 FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 8999988976643 21 3478999998766699999999999999877653
No 82
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.94 E-value=6.6e-26 Score=235.33 Aligned_cols=294 Identities=12% Similarity=0.074 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCe
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK 249 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~ 249 (541)
.....++++++++++|.+. . +++++||+|+..+++++.+ +| ++|+++.+.|+++..+++..|++
T Consensus 87 ~~~~~~l~~~la~~~~~~~-~-------i~~~sGt~a~~~~l~~~~~-----~g---d~v~~~~~~~~~~~~~~~~~g~~ 150 (399)
T 3tqx_A 87 QTIHKELEKDISEFLGTDD-T-------ILYSSCFDANGGLFETLLG-----PE---DAIISDELNHASIIDGIRLCKAQ 150 (399)
T ss_dssp BHHHHHHHHHHHHHHTCSE-E-------EEESCHHHHHHTTHHHHCC-----TT---CEEEEETTCCHHHHHHHHSCCSE
T ss_pred chHHHHHHHHHHHHHCCCc-E-------EEECchHHHHHHHHHHhcC-----CC---CEEEECCcccHHHHHHHHHcCCc
Confidence 3445567779999999863 2 4555668899998887642 56 89999999999999999999999
Q ss_pred EEEeeCCCCCccCHHHHHHhhcc------CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 250 LWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~i~~------~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
++.+|. +|+++|++++++ ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..+ ..
T Consensus 151 ~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~---~~ 222 (399)
T 3tqx_A 151 RYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIG---EN 222 (399)
T ss_dssp EEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSS---TT
T ss_pred eeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccC---CC
Confidence 999986 478899999886 8999999999999999999999999999999999999999633221 11
Q ss_pred CCCCCCCCc-C-CCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 324 GYPIPPFDF-S-VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 324 g~~~p~~~~-~-~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
+. +.... . ..+.|+++.++||++.++.| |+++. ++++..........|.. .++-....+++..+++
T Consensus 223 ~~--~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l 290 (399)
T 3tqx_A 223 GR--GTPEYCGVADRVDILTGTLGKALGGASG-GYTSG-HKEIIEWLRNRSRPYLF--------SNTVAPVIVATSLKVL 290 (399)
T ss_dssp SC--CHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEE-CHHHHHHHHHHCHHHHS--------SCCCCHHHHHHHHHHH
T ss_pred CC--chHHhhCCCCCCcEEEecchHhcccCce-EEEEc-CHHHHHHHHHhCcceec--------cCCCcHHHHHHHHHHH
Confidence 10 00111 1 23568999999999654766 76555 44443322211111110 0111111233445555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCC-CHHHHHHHHHhCCceeccCCC------CC
Q 009181 402 MSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV-DIFEVNDIMSSKGWHLNPLQR------PN 474 (541)
Q Consensus 402 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~-~~~~l~~~l~~~G~~~~~~~~------~~ 474 (541)
+.+. ++.++..++..++++++.+.|+++ ++++. ++..+++++..++. +..++.+.|.++|+.+..... ++
T Consensus 291 ~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~ 367 (399)
T 3tqx_A 291 ELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKA 367 (399)
T ss_dssp HHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCE
T ss_pred HHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCc
Confidence 4433 567889999999999999999987 77766 56677888877543 567899999999987654222 25
Q ss_pred eEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 475 SIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 475 ~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
++|++++..++ +++++++++|+++++++
T Consensus 368 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 368 RIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 89999985544 99999999999998875
No 83
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=6.4e-25 Score=227.66 Aligned_cols=301 Identities=12% Similarity=0.083 Sum_probs=217.0
Q ss_pred HHH-HHHHHHHHHHHHhC--CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhh
Q 009181 169 VAR-FEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (541)
Q Consensus 169 ~~~-~e~ev~~~la~l~g--~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~ 245 (541)
..+ +++++.+++.+.+| .++++ + ++|+|+++++.++++++.+ +| ++|+++.++|+++..+++.
T Consensus 65 ~~~~lr~~la~~l~~~~g~~~~~~~----v--~~t~g~~~al~~~~~~l~~-----~g---d~vl~~~p~y~~~~~~~~~ 130 (390)
T 1d2f_A 65 KNDEFLAAIAHWFSTQHYTAIDSQT----V--VYGPSVIYMVSELIRQWSE-----TG---EGVVIHTPAYDAFYKAIEG 130 (390)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCGGG----E--EEESCHHHHHHHHHHHSSC-----TT---CEEEEEESCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCCCCHHH----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEEcCCCcHHHHHHHHH
Confidence 445 77778888888888 44444 6 9999999999999998752 56 8999999999999999999
Q ss_pred cCCeEEEeeCCC---CCccCHHHHHHhhcc-CceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhh
Q 009181 246 FNIKLWRVPVDK---EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLP 318 (541)
Q Consensus 246 ~G~~v~~v~~~~---~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~ 318 (541)
.|++++.+|+++ ++.+|+++|++++++ ++++|++++|+||+|.+.| +++|+++|++||+++|+|++|+++...
T Consensus 131 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 210 (390)
T 1d2f_A 131 NQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG 210 (390)
T ss_dssp TTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred CCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence 999999999864 346999999999986 7899999999999999977 889999999999999999999876531
Q ss_pred hhhhcCCCCCCCCcCCCCc-eEEEeCCCCCCCCCC--CceEEEEecccccccccccccccCCCccCCCcccCCCCCchHH
Q 009181 319 FAKKLGYPIPPFDFSVQGV-TSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA 395 (541)
Q Consensus 319 f~~~~g~~~p~~~~~~~gv-dsis~~~hK~~~~p~--g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a 395 (541)
|...+++.-...+. |. ..+++|+ +++. .+|+++.+++++.......... ...+ + .....
T Consensus 211 -----g~~~~~~~~~~~~~~d~-~~s~sK~-~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~------~---~~~~~ 272 (390)
T 1d2f_A 211 -----EQPHIPWSNVARGDWAL-LTSGSKS-FNIPALTGAYGIIENSSSRDAYLSALKG--RDGL------S---SPSVL 272 (390)
T ss_dssp -----SSCCCCGGGTCCSSEEE-EECSHHH-HTCGGGCCEEEEECSHHHHHHHHHHHHT--TSCC------C---SCCHH
T ss_pred -----CCCCcCHHHcchhhHhh-ccCccHh-hcccChhheEEEECCHHHHHHHHHHHhh--hccc------C---CCCHH
Confidence 11111111111122 55 8889999 4444 4798887665544322111110 0000 0 11122
Q ss_pred HHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecCC--CCHHHHHHHHH-hCCceecc
Q 009181 396 GAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSDV--VDIFEVNDIMS-SKGWHLNP 469 (541)
Q Consensus 396 ~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~~--~~~~~l~~~l~-~~G~~~~~ 469 (541)
+++++...+ +.+.+++..++..++++++.+.|++ +|++++..+....++++.+++ .+..++.+.|. ++|+.+..
T Consensus 273 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~ 352 (390)
T 1d2f_A 273 ALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMP 352 (390)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeC
Confidence 333333333 3566888889999999999999998 888877644333445667654 47788999998 68977643
Q ss_pred C---C--CCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 470 L---Q--RPNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 470 ~---~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
. + .++++|++++. +.+++++++++|+++++++
T Consensus 353 g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 353 GYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp GGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 2 1 24789999986 4689999999999988764
No 84
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.94 E-value=2.6e-25 Score=233.62 Aligned_cols=304 Identities=12% Similarity=0.074 Sum_probs=223.0
Q ss_pred cccchHHHHHHHHHHHHHHHHhCCC--CC-CCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchH
Q 009181 163 LDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (541)
Q Consensus 163 ~~~~~~~~~~e~ev~~~la~l~g~~--~~-~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~ 239 (541)
|...++..++++++.+++.+.+|.+ ++ + + ++|+||++|+..+++++.. +| ++|+++.+.|+++
T Consensus 73 y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~----v--~~~~g~~~a~~~~~~~~~~-----~g---d~Vl~~~p~y~~~ 138 (429)
T 1yiz_A 73 YTRGFGHPRLVQALSKLYSQLVDRTINPMTE----V--LVTVGAYEALYATIQGHVD-----EG---DEVIIIEPFFDCY 138 (429)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTSCCCTTTS----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCcCC----E--EEecChHHHHHHHHHHhcC-----CC---CEEEEcCCCchhH
Confidence 3333456788888888988888854 44 4 6 8999999999999998742 56 8999999999999
Q ss_pred HHHHhhcCCeEEEeeCCC----------CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEE
Q 009181 240 DKAAQYFNIKLWRVPVDK----------EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (541)
Q Consensus 240 ~ka~~~~G~~v~~v~~~~----------~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~l 306 (541)
...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|+++|++||+++
T Consensus 139 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 218 (429)
T 1yiz_A 139 EPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLC 218 (429)
T ss_dssp HHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEE
Confidence 999999999999999875 4679999999999989999999999999999985 899999999999999
Q ss_pred EEeCCcccchhhhhhhcCCCCCCCC-c-CCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCC
Q 009181 307 HVDLCLGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVS 382 (541)
Q Consensus 307 hvD~a~gg~~~~f~~~~g~~~p~~~-~-~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~ 382 (541)
|+|++|+++... ..+ .+++. + ...+.|++..++||+ +++.| +|+++.+ +++......... . .
T Consensus 219 i~De~~~~~~~~---g~~--~~~~~~~~~~~~~~~~~~s~sK~-~~~~G~r~G~~~~~-~~~~~~l~~~~~-~--~---- 284 (429)
T 1yiz_A 219 VSDEVYEHMVFE---PFE--HIRICTLPGMWERTITIGSAGKT-FSLTGWKIGWAYGP-EALLKNLQMVHQ-N--C---- 284 (429)
T ss_dssp EEECTTTTCBCT---TSC--CCCGGGSTTTGGGEEEEEEHHHH-HTCGGGCCEEEESC-HHHHHHHHHHHH-T--T----
T ss_pred EEeccccccccC---CCC--CcChhhccCCcCceEEEecchhc-cCCCCcceEEEEeC-HHHHHHHHHHHh-h--c----
Confidence 999999876541 111 11222 2 135689999999998 56666 8987765 444332111000 0 0
Q ss_pred CcccCCCCCchHHHHHHHHHHH----h--HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCC-----
Q 009181 383 PTVAGSRPGGLIAGAWAALMSL----G--QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV----- 451 (541)
Q Consensus 383 ~~~~gsr~~~~~a~~~~al~~l----g--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~----- 451 (541)
+ .+-+....+++.++++.. + .+.+++..++..++++++.+.|+++ ++++..+....++++.+++.
T Consensus 285 -~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~ 360 (429)
T 1yiz_A 285 -V--YTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVD 360 (429)
T ss_dssp -T--CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTT
T ss_pred -c--cCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEccccccccc
Confidence 0 011111122334444431 3 4457888888999999999999987 88877655566788877542
Q ss_pred --------CHHHHHHHHH-hCCceecc---CC-------CCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 452 --------DIFEVNDIMS-SKGWHLNP---LQ-------RPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 452 --------~~~~l~~~l~-~~G~~~~~---~~-------~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
+..++.+.|. ++|+.+.. +. .++++|+|++. +.+++++++++|++++
T Consensus 361 ~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 361 LTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWK 426 (429)
T ss_dssp CCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS-CHHHHHHHHHHHHHHS
T ss_pred ccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC-CHHHHHHHHHHHHHhc
Confidence 4567888876 78977643 21 15789999985 6699999999998875
No 85
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.94 E-value=2.3e-25 Score=237.87 Aligned_cols=313 Identities=12% Similarity=0.089 Sum_probs=221.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH--
Q 009181 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK-- 241 (541)
Q Consensus 164 ~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k-- 241 (541)
...+...++|+++++++++++|++.++-..++ ++++|+ +++..++.++.+ +| |+|+++++.|.++..
T Consensus 83 ~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V--~~~sGs-~an~~~~~all~-----pG---D~Vl~~~~~~~~~~~~~ 151 (483)
T 1rv3_A 83 GGTEHIDELETLCQKRALQAYGLDPQCWGVNV--QPYSGS-PANFAVYTALVE-----PH---GRIMGLDLPDGGHLTHG 151 (483)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEC--CCSSHH-HHHHHHHHHHTC-----TT---CEEEEECGGGTCCGGGC
T ss_pred CcchhHHHHHHHHHHHHHHHhCCCcccCceEE--EECCcH-HHHHHHHHHhcC-----CC---CEEEEecCccCcCcchh
Confidence 34467789999999999999999853100014 666666 888888887742 67 999999999887653
Q ss_pred ------HHhhcC--CeEEEeeCC-CCCccCHHHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCC
Q 009181 242 ------AAQYFN--IKLWRVPVD-KEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (541)
Q Consensus 242 ------a~~~~G--~~v~~v~~~-~~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a 311 (541)
.++..| ++++.++++ +++.+|+++|+++++ ++|++|++ +++|++ .+.|+++|.++|+++|++||+|++
T Consensus 152 ~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~a 229 (483)
T 1rv3_A 152 FMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMA 229 (483)
T ss_dssp CBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECT
T ss_pred hhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEcc
Confidence 334455 344444556 578999999999998 79999998 888877 889999999999999999999999
Q ss_pred cccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccc-------cccccCCCccCCCc
Q 009181 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-------AVTEWSGGLYVSPT 384 (541)
Q Consensus 312 ~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 384 (541)
|+.+..+. |. . +. ...++|+++.++||++.||.| |+++++++.. ..... ...... .....+.
T Consensus 230 h~~g~~~~----~~-~-~~--p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~-~~~~~~g~~~~y~~~~~~-~~~~~~~ 298 (483)
T 1rv3_A 230 HISGLVVA----GV-V-PS--PFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVR-SVDPKTGKEILYNLESLI-NSAVFPG 298 (483)
T ss_dssp TTHHHHHH----TS-S-CC--GGGTCSEEEEESSGGGCCCSC-EEEEEECSBC-C-------CCBCCHHHHH-HHHHTTT
T ss_pred chhccccc----CC-C-CC--CCCCCcEEEecCcccCCCCCc-eEEEEcchhh-hhccccCcchhhHHHHHh-hhhcCCc
Confidence 87555431 11 0 01 112689999999999778887 9888876522 00000 000000 0000111
Q ss_pred ccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-CeeEEEEecC--CCCHHHHHHHHH
Q 009181 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-DMTIVAFGSD--VVDIFEVNDIMS 461 (541)
Q Consensus 385 ~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~f~~~--~~~~~~l~~~l~ 461 (541)
..|+.....++++.+++......+++++.++..++++++.+.|++. |++++.+. ....+++.+. +.+..++.+.|.
T Consensus 299 ~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~ 377 (483)
T 1rv3_A 299 LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLE 377 (483)
T ss_dssp TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCCCCCHHHHHHHHH
Confidence 1233333446677778877766789999999999999999999998 99988653 2234444443 457788889999
Q ss_pred hCCceec----cCC----CCCeEEEEecCCC-----HHHHHHHHHHHHHHHHH
Q 009181 462 SKGWHLN----PLQ----RPNSIHICVTLQH-----VAVVDVFLRDLRESVET 501 (541)
Q Consensus 462 ~~G~~~~----~~~----~~~~iRi~~~~~~-----~e~id~~i~~L~~~~~~ 501 (541)
+.|+.+. ... .++++|++++..+ .+|++++++.|+++++.
T Consensus 378 ~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 378 ACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9998765 211 2368999998654 48999999999999876
No 86
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.94 E-value=5.5e-25 Score=225.82 Aligned_cols=300 Identities=13% Similarity=0.069 Sum_probs=213.5
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCC-CCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch--HHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA 242 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~-~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s--~~ka 242 (541)
++...++.+++++++++++|.+++ + +-++|+|||+++..++.++.+ +| ++|+++.+.|++ +...
T Consensus 44 ~~~~~~~~~~~~~~la~~~g~~~~~~-----~i~~t~g~t~a~~~~~~~l~~-----~g---d~vl~~~~~~~~~~~~~~ 110 (362)
T 2c0r_A 44 GAVYEAVHNEAQARLLALLGNPTGYK-----VLFIQGGASTQFAMIPMNFLK-----EG---QTANYVMTGSWASKALKE 110 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCSSEE-----EEEESSHHHHHHHHHHHHHCC-----TT---CEEEEEECSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcE-----EEEECCCchHHHHHHHHhcCC-----CC---CeEEEEecCcHhHHHHHH
Confidence 466677778899999999999764 3 226789999999999998742 56 889887776666 3467
Q ss_pred HhhcCCeEEEeeCCC--CC--ccCHHHHHHhhccCceEEEeecCCCCCccc-cCHHHHHHHHHHcCCEEEEeCCcccchh
Q 009181 243 AQYFNIKLWRVPVDK--EF--RADVKAIKKYINRNTVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVDLCLGGFVL 317 (541)
Q Consensus 243 ~~~~G~~v~~v~~~~--~~--~~d~~~Le~~i~~~t~~vv~~~~~~~~G~i-d~i~~I~~la~~~~i~lhvD~a~gg~~~ 317 (541)
++..| +++.++++. ++ .+|.++++ ++++|++|++++++||||.+ .|+++| +|+++|+|++|+.+..
T Consensus 111 ~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~ 181 (362)
T 2c0r_A 111 AKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR 181 (362)
T ss_dssp HHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSS
T ss_pred HHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCC
Confidence 77889 999999872 22 35666654 78899999999999999995 888887 8999999999975433
Q ss_pred hhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCC-Ccc-CCCcccCCCCCchHH
Q 009181 318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG-GLY-VSPTVAGSRPGGLIA 395 (541)
Q Consensus 318 ~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~gsr~~~~~a 395 (541)
| ++.. ..|+++.++||+ ++|.|+|+++.+++ +........+.+.. +.. ......++.+...++
T Consensus 182 ~-----------~~~~--~~d~~~~s~~K~-~g~~G~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 246 (362)
T 2c0r_A 182 P-----------FDLN--QFGLVYAGAQKN-LGPSGVTVVIVRED-LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIY 246 (362)
T ss_dssp C-----------CCGG--GCSEEEEETTTT-TCCSSCEEEEEEGG-GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred c-----------cchh--HCcEEEEecccc-ccCcCcEEEEEcHH-HHhhccccCchHHhHHHHhhccCcCCCchHHHHH
Confidence 2 2322 238999999999 57999998777654 32221110010000 000 000112333333456
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhhcCCCe-EEecCC---CeeEEEEecCC-CCHHHHHHHHHhCCceecc
Q 009181 396 GAWAALMSLGQE-GYLENTKAIMEVSESIQKGIKEIPEL-FIIGRP---DMTIVAFGSDV-VDIFEVNDIMSSKGWHLNP 469 (541)
Q Consensus 396 ~~~~al~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~---~~~~v~f~~~~-~~~~~l~~~l~~~G~~~~~ 469 (541)
++.++++.+... +++++.++..++++++.+.|++++++ ++..++ ...+++|..++ .+..++.+.|.++|+.+..
T Consensus 247 a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~ 326 (362)
T 2c0r_A 247 MVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLK 326 (362)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCB
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeecc
Confidence 777777765554 78999999999999999999998546 775432 34677887753 3567899999999985532
Q ss_pred -CCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 470 -LQRPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 470 -~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
....+.+|+|++..++ +|++++++.|++++++.
T Consensus 327 g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 327 GHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp CCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2224679999987665 99999999999987653
No 87
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.94 E-value=6.3e-25 Score=226.57 Aligned_cols=316 Identities=15% Similarity=0.104 Sum_probs=224.6
Q ss_pred HHHHHHhhcccC-CCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC
Q 009181 148 INEACSMFAHTN-PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (541)
Q Consensus 148 ~~~~~~~~~~~n-~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi 224 (541)
+.+++...+... ..+|...++..++++.+.+++.+.+|.+ +.+ ++ ++|+|+++++.++++++.+ +|
T Consensus 43 v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~---~v--~~~~g~~~a~~~~~~~l~~-----~g- 111 (376)
T 2dou_A 43 PLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRR---EA--LALIGSQEGLAHLLLALTE-----PE- 111 (376)
T ss_dssp HHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTT---SE--EEESSHHHHHHHHHHHHCC-----TT-
T ss_pred HHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cE--EEcCCcHHHHHHHHHHhcC-----CC-
Confidence 444444444321 2334333567788888888888877986 231 26 8999999999999998742 56
Q ss_pred CCCeEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHH
Q 009181 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALS 301 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~ 301 (541)
++|+++.++|+++...++..|++++.+|+++++.+|+++|++++++++++|++++|+||+|.+.| +++|+++|++
T Consensus 112 --d~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 189 (376)
T 2dou_A 112 --DLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARK 189 (376)
T ss_dssp --CEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred --CEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999556679999999999888999999999999999977 6789999999
Q ss_pred cCCEEEEeCCcccchhhhhhhcCCCCCCCCc-CCCCceEEEeCCCCCCCCCC--CceEEEEecccccccccccccccCCC
Q 009181 302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGG 378 (541)
Q Consensus 302 ~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~-~~~gvdsis~~~hK~~~~p~--g~g~ll~~~~~~~~~~~~~~~~~~~~ 378 (541)
||+++++|++|+++... |...+.++. ...+.+++..+++|+ +++. .+|+++. ++++..........|..+
T Consensus 190 ~~~~li~De~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~ 262 (376)
T 2dou_A 190 HGLWLIHDNPYVDQVYE-----GEAPSPLALPGAKERVVELFSLSKS-YNLAGFRLGFALG-SEEALARLERVKGVIDFN 262 (376)
T ss_dssp TTCEEEEECTTGGGBSS-----SCCCCGGGSTTGGGTEEEEEEHHHH-HTCGGGCCEEEEE-CHHHHHHHHHHHHHHCCC
T ss_pred cCCEEEEEccchhcccC-----CCCCChhhcCCCCCcEEEEecchhh-cCChhheeEEEec-CHHHHHHHHHHHHhcccC
Confidence 99999999999876531 110111222 123457888899998 4434 4798665 444433221111111110
Q ss_pred ccCCCcccCCCCCchHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC-CCHHH
Q 009181 379 LYVSPTVAGSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV-VDIFE 455 (541)
Q Consensus 379 ~~~~~~~~gsr~~~~~a~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~-~~~~~ 455 (541)
....++.++...+ +.+.+++..++..++++++.+.|+++ +++..+....++++.+++ .+..+
T Consensus 263 -------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 327 (376)
T 2dou_A 263 -------------QYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEGVDDLE 327 (376)
T ss_dssp -------------SCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTTCCHHH
T ss_pred -------------CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCCCCHHH
Confidence 0122344444444 35678888899999999999999887 776644444567777753 46788
Q ss_pred HHHHHHhCCceecc---CC--CCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 456 VNDIMSSKGWHLNP---LQ--RPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 456 l~~~l~~~G~~~~~---~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
+.+.|.++|+.+.. ++ .++++|++++. +.+++++++++|++++
T Consensus 328 ~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 328 FGLRLVERGVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp HHHHHHHTTEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 99999999977643 22 24789999986 6699999999998764
No 88
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=2.8e-25 Score=232.80 Aligned_cols=307 Identities=16% Similarity=0.134 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcC
Q 009181 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (541)
Q Consensus 168 ~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G 247 (541)
+..++..++++.+++++|.+ . . +++++||+|+..++++++- ++| ++|+++.++|+++..+++..|
T Consensus 39 g~~~l~~~l~~~la~~~g~~-~-----~--i~~~~gt~al~~~~~~~~~----~~g---d~Vl~~~~~~~~~~~~~~~~g 103 (418)
T 2c81_A 39 GEESMERKFAKAFADFNGVP-Y-----C--VPTTSGSTALMLALEALGI----GEG---DEVIVPSLTWIATATAVLNVN 103 (418)
T ss_dssp SSCCHHHHHHHHHHHHHTCS-E-----E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEESSSCTHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCC-c-----E--EEeCCHHHHHHHHHHHcCC----CCc---CEEEECCCccHhHHHHHHHcC
Confidence 33445566778999999987 2 2 6788889999999998721 256 899999999999999999999
Q ss_pred CeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCC
Q 009181 248 IKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP 326 (541)
Q Consensus 248 ~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~ 326 (541)
++++.+++++ ++.+|+++|++++++++++|++++ |+|.+.|+++|.++|++||+++|+|++|+.+.. + . +.
T Consensus 104 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-~-~--~~- 175 (418)
T 2c81_A 104 ALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPVH---LFGSMANMDEINEIAQEHNLFVIEDCAQSHGSV-W-N--NQ- 175 (418)
T ss_dssp CEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCBC---CTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-E-T--TE-
T ss_pred CEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEeC---CcCCcccHHHHHHHHHHCCCEEEEECcccccCc-c-C--CE-
Confidence 9999999986 789999999999999999888654 789999999999999999999999999987652 1 1 00
Q ss_pred CCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccc-cC--C------CccC----CCcccCCCCCch
Q 009181 327 IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE-WS--G------GLYV----SPTVAGSRPGGL 393 (541)
Q Consensus 327 ~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~-~~--~------~~~~----~~~~~gsr~~~~ 393 (541)
++. ....+++.++++||++ ++..+|+++.+++++.......... .. . ..+. .+...|......
T Consensus 176 --~~~-~~~~~~~~s~s~~K~~-~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 251 (418)
T 2c81_A 176 --RAG-TIGDIGAFSCQQGKVL-TAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLS 251 (418)
T ss_dssp --ETT-SSSSEEEEECCTTSSS-CSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCC
T ss_pred --ecc-cccceEEEeccCCccc-CCCCeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcC
Confidence 011 1123778888889995 4435676665555543221100000 00 0 0010 011122111111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCe------eEEEEecC-----CCCHHHHHHHHHh
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDM------TIVAFGSD-----VVDIFEVNDIMSS 462 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~------~~v~f~~~-----~~~~~~l~~~l~~ 462 (541)
.+.+++.....+++++..++..++++++.+.|+++|++++..++.. .++.+.++ +.+..++.+.|.+
T Consensus 252 --~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 329 (418)
T 2c81_A 252 --EFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILRE 329 (418)
T ss_dssp --HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHH
Confidence 1122222223456788888999999999999999999998854432 25556665 3578899999999
Q ss_pred C-Cce---eccCC--------------------------------CC-------CeEEEEecCCC-H-HHHHHHHHHHHH
Q 009181 463 K-GWH---LNPLQ--------------------------------RP-------NSIHICVTLQH-V-AVVDVFLRDLRE 497 (541)
Q Consensus 463 ~-G~~---~~~~~--------------------------------~~-------~~iRi~~~~~~-~-e~id~~i~~L~~ 497 (541)
+ |+. +.... .| +.+|++++..+ + +|++++++.|++
T Consensus 330 ~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~ 409 (418)
T 2c81_A 330 KLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAE 409 (418)
T ss_dssp HHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred cCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 9 987 43211 11 47999998766 6 999999999999
Q ss_pred HHHHHH
Q 009181 498 SVETVK 503 (541)
Q Consensus 498 ~~~~l~ 503 (541)
+++++.
T Consensus 410 ~~~~~~ 415 (418)
T 2c81_A 410 LARKFC 415 (418)
T ss_dssp HHHTTC
T ss_pred HHHhhc
Confidence 987543
No 89
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.94 E-value=7.9e-25 Score=230.57 Aligned_cols=304 Identities=12% Similarity=0.131 Sum_probs=217.2
Q ss_pred chHHHHHHHHHHHHHHHHhC----CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH
Q 009181 166 FQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g----~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k 241 (541)
..+..++++++.+++.+..| .++++ + ++|+||++|+..+++++++ +| ++|+++.+.|+++..
T Consensus 85 ~~g~~~l~~~la~~~~~~~~~~~~~~~~~----v--~~~~gg~~a~~~~~~~l~~-----~g---d~vl~~~p~~~~~~~ 150 (435)
T 3piu_A 85 YHGLPAFKKAMVDFMAEIRGNKVTFDPNH----L--VLTAGATSANETFIFCLAD-----PG---EAVLIPTPYYPGFDR 150 (435)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTSSCCCGGG----E--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTHHH
T ss_pred CCCcHHHHHHHHHHHHHhhCCCCCCCHHH----E--EEcCChHHHHHHHHHHhcC-----CC---CeEEECCCccccHHH
Confidence 34556788877777776655 44444 5 9999999999999998853 66 899999999999999
Q ss_pred HHh-hcCCeEEEeeCCC--CCccCHHHHHHhhcc------CceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEe
Q 009181 242 AAQ-YFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD 309 (541)
Q Consensus 242 a~~-~~G~~v~~v~~~~--~~~~d~~~Le~~i~~------~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD 309 (541)
.+. ..|++++.+++++ ++.+|+++|++++++ ++++|++++|+||+|.+.+ +++|.++|++||+++++|
T Consensus 151 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 230 (435)
T 3piu_A 151 DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD 230 (435)
T ss_dssp HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 888 7899999999985 567999999999986 8899999999999999966 578899999999999999
Q ss_pred CCcccchhhhhhhcCCCCCCCCcC-C---------CCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCC
Q 009181 310 LCLGGFVLPFAKKLGYPIPPFDFS-V---------QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGG 378 (541)
Q Consensus 310 ~a~gg~~~~f~~~~g~~~p~~~~~-~---------~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~ 378 (541)
++|+++.+. ..+. .+..... . .+..++..++||.+. ++..+|+++.+++.+..........+.
T Consensus 231 ea~~~~~~~---~~~~-~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-- 304 (435)
T 3piu_A 231 EIYSGTAFS---SPSF-ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL-- 304 (435)
T ss_dssp CTTGGGCCS---SSCC-CCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSC--
T ss_pred ccccccccC---CCCC-cCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCC--
Confidence 999875431 0000 0000000 1 233477889999843 444589887766554332111111000
Q ss_pred ccCCCcccCCCCCchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCC--
Q 009181 379 LYVSPTVAGSRPGGLIAGAWAALMSLG-----QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV-- 451 (541)
Q Consensus 379 ~~~~~~~~gsr~~~~~a~~~~al~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~-- 451 (541)
.+ ..++.++...+. .+.+++..+++.++++++.+.|++. ++++..+....++++.+.+.
T Consensus 305 --------~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~ 370 (435)
T 3piu_A 305 --------VS-----SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLR 370 (435)
T ss_dssp --------CC-----HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSS
T ss_pred --------CC-----HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccc
Confidence 01 112222222222 2345677888889999999999987 88887655556777776542
Q ss_pred -----CHHHHHHHHHhC-Cceecc---C--CCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 452 -----DIFEVNDIMSSK-GWHLNP---L--QRPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 452 -----~~~~l~~~l~~~-G~~~~~---~--~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+..++.+.|.++ |+.+.. + ..++++|++++..+.+++++++++|+++++++.
T Consensus 371 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 371 SNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred cCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 345788888777 876643 1 235799999986666999999999999998764
No 90
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.94 E-value=1.8e-24 Score=221.55 Aligned_cols=285 Identities=14% Similarity=0.109 Sum_probs=215.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v 253 (541)
.++++++++++|.++++ + ++|+|||+|+..+++++ ++|+++.++|+++...++..|++++.+
T Consensus 64 ~~l~~~la~~~~~~~~~----i--~~~~g~t~al~~~~~~~------------d~vi~~~~~~~~~~~~~~~~g~~~~~~ 125 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIG----I--VLGNGASEIIELSISLF------------EKILIIVPSYAEYEINAKKHGVSVVFS 125 (361)
T ss_dssp HHHHHHHHHHHTCCSCE----E--EEESSHHHHHHHHHTTC------------SEEEEEESCCTHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCcce----E--EEcCCHHHHHHHHHHHc------------CcEEEecCChHHHHHHHHHcCCeEEEe
Confidence 34666888888987765 6 89999999999999876 479999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCC
Q 009181 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (541)
Q Consensus 254 ~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~ 330 (541)
|+++++.++++++++++++ ++++++++|+||+|.+.| +++|+++|++||+++|+|++|+++... . + .+..
T Consensus 126 ~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~--~--~~~~ 198 (361)
T 3ftb_A 126 YLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD--P--S--SSFV 198 (361)
T ss_dssp ECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC--T--T--SSSG
T ss_pred ecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC--c--c--cchh
Confidence 9998778899999999998 999999999999999976 667888888999999999999877651 0 0 0111
Q ss_pred Cc-CCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHH-hHH
Q 009181 331 DF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQE 407 (541)
Q Consensus 331 ~~-~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~l-g~~ 407 (541)
.. ...+..++..+++|.+. ++.++|++++.++++..........| .....++.++...+ ..+
T Consensus 199 ~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~ 263 (361)
T 3ftb_A 199 GEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPW---------------NINCFAEMAAINCLKDTN 263 (361)
T ss_dssp GGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTT---------------CSCHHHHHHHHHTSSCHH
T ss_pred HhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCC---------------CCCHHHHHHHHHHhcCHH
Confidence 11 12233567779999943 34457887756766554322111111 11122444444434 346
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeE-EecCCCeeEEEEecCCCCHHHHHHHHHhCCceecc---CC--CCCeEEEEec
Q 009181 408 GYLENTKAIMEVSESIQKGIKEIPELF-IIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP---LQ--RPNSIHICVT 481 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~~~~-v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~---~~--~~~~iRi~~~ 481 (541)
++++..++..++++++.+.|+++|+++ +. ++..+++++..++.+..++.+.|.++|+.+.. ++ .++++|++++
T Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~ 342 (361)
T 3ftb_A 264 YIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK 342 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC
Confidence 788889999999999999999999998 55 55667788887766788999999999987653 21 2478999987
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 009181 482 LQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 482 ~~~~e~id~~i~~L~~~~~~ 501 (541)
+.++++++++.|+++.+.
T Consensus 343 --~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 343 --DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp --CHHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHHhc
Confidence 568889999999887653
No 91
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.94 E-value=2.7e-25 Score=231.14 Aligned_cols=294 Identities=13% Similarity=0.120 Sum_probs=214.2
Q ss_pred HHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeC
Q 009181 176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (541)
Q Consensus 176 v~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~ 255 (541)
+++.+++++|.++++ + ++|+|+++++..+++++.+ +| ++|+++.++|+++...++..|++++.+|.
T Consensus 79 l~~~la~~~g~~~~~----v--~~~~g~~~al~~~~~~~~~-----~g---d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~ 144 (397)
T 2zyj_A 79 LRAFVAEWIGVRPEE----V--LITTGSQQALDLVGKVFLD-----EG---SPVLLEAPSYMGAIQAFRLQGPRFLTVPA 144 (397)
T ss_dssp HHHHHHHHHTSCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHhCCChhh----E--EEeccHHHHHHHHHHHhCC-----CC---CEEEEeCCCcHHHHHHHHHcCCEEEecCc
Confidence 444666777876654 6 8999999999999998742 56 89999999999999999999999999999
Q ss_pred CCCCccCHHHHHHhhcc-CceEE-EeecCCCCCccccCH---HHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCC
Q 009181 256 DKEFRADVKAIKKYINR-NTVLI-VGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (541)
Q Consensus 256 ~~~~~~d~~~Le~~i~~-~t~~v-v~~~~~~~~G~id~i---~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~ 330 (541)
++++ +|+++|++++++ ++++| ++++|+||+|.+.|. ++|+++|++||+++++|++|+++... |...+.+
T Consensus 145 ~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-----g~~~~~~ 218 (397)
T 2zyj_A 145 GEEG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFG-----EARLPSL 218 (397)
T ss_dssp ETTE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCS-----SCCCCCH
T ss_pred CCCC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCC-----CCCCCch
Confidence 7765 999999999987 78877 579999999999875 48999999999999999999876531 1100011
Q ss_pred -CcCCC---CceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhH
Q 009181 331 -DFSVQ---GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (541)
Q Consensus 331 -~~~~~---gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~ 406 (541)
.+... +..++..++||++.++.++|+++.+ +++..........+.. +. ...++.++...+..
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~---------~~----~~~~~~a~~~~l~~ 284 (397)
T 2zyj_A 219 FELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAH-PEALQKLVQAKQGADL---------HT----PMLNQMLVHELLKE 284 (397)
T ss_dssp HHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECC-HHHHHHHHHHHHHHHS---------SC----CHHHHHHHHHHHTT
T ss_pred hhhCcccCCCeEEEEecccccccccceeEEEecC-HHHHHHHHHHHHhhcC---------CC----CHHHHHHHHHHHHh
Confidence 11111 2347788999995533457987765 4443321111111100 00 12244444444432
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhc-CC-CeEEecCCCeeEEEEecCC-CCHHHHHHHHHhCCceecc---CC----CC
Q 009181 407 ---EGYLENTKAIMEVSESIQKGIKE-IP-ELFIIGRPDMTIVAFGSDV-VDIFEVNDIMSSKGWHLNP---LQ----RP 473 (541)
Q Consensus 407 ---~g~~~~~~~~~~~a~~l~~~L~~-~~-~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~~~G~~~~~---~~----~~ 473 (541)
+.+++..+++.++++++.+.|++ +| ++++..+....++++..+. .+..++.+.|.++|+.+.. +. .+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~ 364 (397)
T 2zyj_A 285 GFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGE 364 (397)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCC
Confidence 45777888888999999999987 67 6888766566778888753 4788999999999987643 21 35
Q ss_pred CeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 474 NSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 474 ~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+++|++++..+.+++++++++|+++++++.
T Consensus 365 ~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 365 NTLRLSYATLDREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp TEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 789999987666999999999999988764
No 92
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.94 E-value=7e-25 Score=227.18 Aligned_cols=296 Identities=17% Similarity=0.128 Sum_probs=207.4
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.+ .. + ++++ ||+|+.+++++++ .++| ++|+++.++|+++..+++..|++++.++
T Consensus 42 ~l~~~la~~~~~~-~~----i--~~~s-Gt~al~~~l~~l~----~~~g---d~Vi~~~~~~~~~~~~~~~~g~~~~~v~ 106 (388)
T 1b9h_A 42 SFEREFAAHHGAA-HA----L--AVTN-GTHALELALQVMG----VGPG---TEVIVPAFTFISSSQAAQRLGAVTVPVD 106 (388)
T ss_dssp HHHHHHHHHTTCS-EE----E--EESC-HHHHHHHHHHHTT----CCTT---CEEEEESSSCTHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCCC-eE----E--EeCC-HHHHHHHHHHHcC----CCCc---CEEEECCCccHHHHHHHHHcCCEEEEEe
Confidence 3555888888886 32 3 5555 5999999999872 1256 8999999999999999999999999999
Q ss_pred CCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcC
Q 009181 255 VDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS 333 (541)
Q Consensus 255 ~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~ 333 (541)
+++ ++.+|+++|+++++++|++|+ |+||+|.+.|+++|.++|++||+++|+|++|+.+..+ . | .++.
T Consensus 107 ~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~--~--~-----~~~~ 174 (388)
T 1b9h_A 107 VDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARW--Q--G-----KRVG 174 (388)
T ss_dssp BCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE--T--T-----EEGG
T ss_pred cCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCcc--C--C-----eecc
Confidence 986 589999999999998888877 8889999999999999999999999999999754331 0 1 1111
Q ss_pred CC-CceEEEeCCCCCCCCCCCceEEEEecccc--ccccccccc-ccCCC--ccCCCcccCCCCCchHHHHHHHHHHHhHH
Q 009181 334 VQ-GVTSISVDVHKYGLAPKGTSVVLYRNREI--RKHQFVAVT-EWSGG--LYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (541)
Q Consensus 334 ~~-gvdsis~~~hK~~~~p~g~g~ll~~~~~~--~~~~~~~~~-~~~~~--~~~~~~~~gsr~~~~~a~~~~al~~lg~~ 407 (541)
.. .+++.+++.||++.++ .+|+++.+++.+ ......... .+... .+ .....|+........+++... ..+
T Consensus 175 ~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~a~~~~--~~~ 250 (388)
T 1b9h_A 175 ELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRY-FHKIAGSNMRLNEFSASVLRA--QLA 250 (388)
T ss_dssp GSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSC-CCCSCCCBCBCBHHHHHHHHH--HHT
T ss_pred cccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhCCCCccCccc-eeecccccCCcCHHHHHHHHH--HHH
Confidence 22 3788899999996554 568777666544 222110000 00000 00 000112111111223333322 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEecC------CCeeEEEEecCCC---CHHHHHHHHHhCCceeccCCCC-----
Q 009181 408 GYLENTKAIMEVSESIQKGIKEIPELFIIGR------PDMTIVAFGSDVV---DIFEVNDIMSSKGWHLNPLQRP----- 473 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~------~~~~~v~f~~~~~---~~~~l~~~l~~~G~~~~~~~~~----- 473 (541)
.+++..++..++++++.+.|+++|++++..+ ....++++.+++. +..++.+.|.++|+.+.....|
T Consensus 251 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~ 330 (388)
T 1b9h_A 251 RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTD 330 (388)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccCh
Confidence 5677888888999999999999989988763 2256888888754 5678999999999765321111
Q ss_pred ---------------------------CeEEEEecCCC-H-HHHHHHHHHHHHHHHH
Q 009181 474 ---------------------------NSIHICVTLQH-V-AVVDVFLRDLRESVET 501 (541)
Q Consensus 474 ---------------------------~~iRi~~~~~~-~-e~id~~i~~L~~~~~~ 501 (541)
+.+|++++..+ + +|++++++.|++++++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 331 AFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 25899987666 5 9999999999998764
No 93
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.93 E-value=5.4e-26 Score=234.71 Aligned_cols=299 Identities=14% Similarity=0.025 Sum_probs=214.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCccceEE-cCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch--HHHHH
Q 009181 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKAA 243 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~-t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s--~~ka~ 243 (541)
+...++.+++++.+++++|+++.. ++ +| |+|||+++.+++..+.. +| +++++....|++ +...+
T Consensus 68 ~~~~~~~~~ar~~la~ll~~~~~~---ev--if~t~~~T~a~n~ai~~l~~-----~g---d~v~~~~~~~~~~~~~~~a 134 (386)
T 3qm2_A 68 KEFIQVAEEAEQDFRDLLNIPSNY---KV--LFCHGGGRGQFAGVPLNLLG-----DK---TTADYVDAGYWAASAIKEA 134 (386)
T ss_dssp -----CCHHHHHHHHHHHTCCTTE---EE--EEEESCTTHHHHHHHHHHCT-----TC---CEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc---eE--EEEcCCchHHHHHHHHhccC-----CC---CeEEEEeCCHHHHHHHHHH
Confidence 444566677999999999997532 25 77 79999999999987632 55 777655555555 34456
Q ss_pred hhcCCeEEEeeCC--CCCc-cCHHHHHHhhccCceEEEeecCCCCCccc-cCHHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 244 QYFNIKLWRVPVD--KEFR-ADVKAIKKYINRNTVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 244 ~~~G~~v~~v~~~--~~~~-~d~~~Le~~i~~~t~~vv~~~~~~~~G~i-d~i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
+..| ++..++++ +.|. +++++++++++++|++|.+++.+|.+|++ .|+++|+ +|+++|||++++.+.+
T Consensus 135 ~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~-- 206 (386)
T 3qm2_A 135 KKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSA-- 206 (386)
T ss_dssp TTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS--
T ss_pred HHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCC--
Confidence 6779 99999998 5665 88999999999999999999999999995 9999986 7999999999764444
Q ss_pred hhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccC-CC-ccCCCcccCCCCCchHHHH
Q 009181 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS-GG-LYVSPTVAGSRPGGLIAGA 397 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~gsr~~~~~a~~ 397 (541)
++|+...++ +++++|||+ +|+|+|+++++++.+.... ...+.+. .+ ........|+.+-..++++
T Consensus 207 ---------pidv~~~~~--~~~s~hK~l-GP~G~g~l~v~~~~~~~~~-~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l 273 (386)
T 3qm2_A 207 ---------PLDVSRYGV--IYAGAQKNI-GPAGLTLVIVREDLLGKAH-ESCPSILDYTVLNDNDSMFNTPPTFAWYLS 273 (386)
T ss_dssp ---------CCCGGGCSE--EEEETTTTT-CCTTEEEEEEEGGGCSCCC-TTSCGGGCHHHHHHC-------CCSHHHHH
T ss_pred ---------CCCccccCE--EEEeccccc-CCCccEEEEECHHHHhhhc-ccCCcHHHHHHHhhcCCCCCCCcHHHHHHH
Confidence 466666664 568899996 8999999888866432211 1111110 00 0001112234444568899
Q ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhhcCCCe-EEecCC---CeeEEEEecCC--CCHHHHHHHHHhCCceecc-
Q 009181 398 WAALMSLGQE-GYLENTKAIMEVSESIQKGIKEIPEL-FIIGRP---DMTIVAFGSDV--VDIFEVNDIMSSKGWHLNP- 469 (541)
Q Consensus 398 ~~al~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~---~~~~v~f~~~~--~~~~~l~~~l~~~G~~~~~- 469 (541)
-++++.+... |++++.++..++++++++.|+++ ++ ....++ ...+++|.+++ .+ .++...|.++|+.+..
T Consensus 274 ~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g 351 (386)
T 3qm2_A 274 GLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNTLD-KVFLEESFAAGLHALKG 351 (386)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCcccc-HHHHHHHHHCCCEEeCC
Confidence 9999988888 89999999999999999999998 55 332222 24689999874 23 5677778899977543
Q ss_pred CCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 470 LQRPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 470 ~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
....+.+|+|+..+++ +|||++++.|+++.++
T Consensus 352 ~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 352 HRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 2222569999988877 9999999999998765
No 94
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.93 E-value=6.1e-25 Score=226.46 Aligned_cols=304 Identities=15% Similarity=0.120 Sum_probs=217.7
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHh-CCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccc
Q 009181 159 NPLHLDIFQSVARFEAEVIAMTAALL-GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (541)
Q Consensus 159 n~~~~~~~~~~~~~e~ev~~~la~l~-g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~ 237 (541)
..++|...++..++++ .+++++ +.++++ + ++|+|||+|+..+++++.+ +| ++|+++.+.|+
T Consensus 55 ~~~~y~~~~g~~~l~~----~la~~~~~~~~~~----v--~~~~g~~~a~~~~~~~l~~-----~g---d~Vl~~~~~~~ 116 (375)
T 3op7_A 55 TKLNYGWIEGSPAFKK----SVSQLYTGVKPEQ----I--LQTNGATGANLLVLYSLIE-----PG---DHVISLYPTYQ 116 (375)
T ss_dssp SCCSSCCTTCCHHHHH----HHHTTSSSCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESSCT
T ss_pred CCcCCCCCCChHHHHH----HHHHHhccCChhh----E--EEcCChHHHHHHHHHHhcC-----CC---CEEEEeCCCch
Confidence 3344544555555555 666665 455554 5 8999999999999998753 66 89999999999
Q ss_pred hHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCc
Q 009181 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL 312 (541)
Q Consensus 238 s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~ 312 (541)
++...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|.++|++||+++++|++|
T Consensus 117 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~ 196 (375)
T 3op7_A 117 QLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVY 196 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred hHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 99999999999999999873 6679999999999999999999999999999999 999999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCC
Q 009181 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (541)
Q Consensus 313 gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~ 391 (541)
+++... + .+.. ....+.+.+..+++|.+. ++.++|+++. ++++..........+.. .+
T Consensus 197 ~~~~~~-----~--~~~~-~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~--------~~---- 255 (375)
T 3op7_A 197 RSFSEL-----D--VPSI-IEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMI--------CA---- 255 (375)
T ss_dssp CCCSSS-----C--CCCH-HHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTS--------CC----
T ss_pred cccccc-----C--CCch-hhhcCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhcc--------CC----
Confidence 876531 1 1111 112345677888899953 3344687666 55544332111111100 00
Q ss_pred chHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC-CCCHHHHHHHH-HhCCcee
Q 009181 392 GLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD-VVDIFEVNDIM-SSKGWHL 467 (541)
Q Consensus 392 ~~~a~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~-~~~~~~l~~~l-~~~G~~~ 467 (541)
....++++...+ ....+++..++..++++++.+.|++.+++.+..+.....+++.++ +.+..++.+.+ .++|+.+
T Consensus 256 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 334 (375)
T 3op7_A 256 -GVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLL 334 (375)
T ss_dssp -CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEEC
T ss_pred -CcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEE
Confidence 122333333333 234567777777889999999999988998876555444444443 34677888887 5789765
Q ss_pred cc---CCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 468 NP---LQRPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 468 ~~---~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
.. +..++++|++++.. .+++++++++|+++++++.
T Consensus 335 ~~g~~~~~~~~iRi~~~~~-~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 335 VPGNRFERDGYVRLGFACE-QETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp EEGGGGTCTTEEEECCCSC-HHHHHHHHHHHHHHHGGGC
T ss_pred eChhhhCCCCeEEEEecCC-HHHHHHHHHHHHHHHHHHh
Confidence 43 33468999998864 4899999999999987654
No 95
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.93 E-value=4e-25 Score=227.74 Aligned_cols=297 Identities=12% Similarity=0.078 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcC
Q 009181 170 ARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G 247 (541)
.++++.+.+++.+.+|.+ +++ + ++|+|||+|+..+++++.+ +| ++|+++.++|+++...++..|
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~~~----i--~~t~g~~~a~~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~~g 126 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARPEW----I--FPIPDVVRGLYIAIDHFTP-----AQ---SKVIVPTPAYPPFFHLLSATQ 126 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHSC-----TT---CCEEEEESCCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHH----E--EEeCChHHHHHHHHHHhcC-----CC---CEEEEcCCCcHhHHHHHHHcC
Confidence 677777888888887754 443 6 8999999999999998753 56 899999999999999999999
Q ss_pred CeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcC
Q 009181 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (541)
Q Consensus 248 ~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g 324 (541)
++++.+|++++ +|+++|+++++++++++++++|+||+|.+.| +++|.++|++||+++|+|++|+++... |
T Consensus 127 ~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-----g 199 (377)
T 3fdb_A 127 REGIFIDATGG--INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFD-----G 199 (377)
T ss_dssp CCEEEEECTTS--CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS-----S
T ss_pred CEEEEccCCCC--CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcC-----C
Confidence 99999999876 9999999999999999999999999999976 667888899999999999999876531 1
Q ss_pred -CCCCCC-CcCCCCceEEEeCCCCCC-CCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 325 -YPIPPF-DFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 325 -~~~p~~-~~~~~gvdsis~~~hK~~-~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
...+++ .+...+.+.+..+++|.+ .++.++|+++..++++....... ..+.. + +....++.++.
T Consensus 200 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~-~~~~~---------~---~~~~~~~~a~~ 266 (377)
T 3fdb_A 200 QHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQL-SPVIK---------D---GASTLGLIAAE 266 (377)
T ss_dssp CCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHS-CHHHH---------C---CCCHHHHHHHH
T ss_pred CCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHH-HHhhc---------C---CCCHHHHHHHH
Confidence 000011 111134568888999995 23345787676665544322110 00000 0 01122344433
Q ss_pred HHH--hHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecCCC-CHHHHHHHHHhC-Cceecc---CC--
Q 009181 402 MSL--GQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSDVV-DIFEVNDIMSSK-GWHLNP---LQ-- 471 (541)
Q Consensus 402 ~~l--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~~~-~~~~l~~~l~~~-G~~~~~---~~-- 471 (541)
..+ +.+.+++..++..++++++.+.|++ +|++++..+....++++.++.. ...++.+.|.++ |+.+.. ++
T Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 346 (377)
T 3fdb_A 267 AAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED 346 (377)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC
Confidence 333 3566888999999999999999998 8999988655555556766542 225667777665 876642 22
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 472 RPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 472 ~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
.++++|++++. +.+++++++++|++++++
T Consensus 347 ~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 347 GTGFCRLNFAT-SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp GTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 25799999985 669999999999998754
No 96
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.93 E-value=2.3e-24 Score=223.56 Aligned_cols=316 Identities=14% Similarity=0.111 Sum_probs=220.4
Q ss_pred HHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC
Q 009181 148 INEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (541)
Q Consensus 148 ~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~ 225 (541)
+.+++...+.....+|....+..++++++.+++.+.+|.+ +++ + ++|+|||+|+..+++++.+ +|
T Consensus 49 v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----v--~~t~g~~~al~~~~~~l~~-----~g-- 115 (391)
T 3h14_A 49 AVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGR----V--VITPGSSGGFLLAFTALFD-----SG-- 115 (391)
T ss_dssp HHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESSHHHHHHHHHHHHCC-----TT--
T ss_pred HHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHH----E--EEecChHHHHHHHHHHhcC-----CC--
Confidence 4444544444433455445556788888888888888854 443 6 9999999999999998753 66
Q ss_pred CCeEEecCCccchHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHH
Q 009181 226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELAL 300 (541)
Q Consensus 226 ~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~ 300 (541)
++|+++.++|+++...++..|++++.+|+++ ++.+|+++|+++ ++++|++++|+||+|.+.| +++|+++|+
T Consensus 116 -d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~ 191 (391)
T 3h14_A 116 -DRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQ 191 (391)
T ss_dssp -CEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred -CEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999986 457899999888 7899999999999999987 889999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCc
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGL 379 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~ 379 (541)
+||+++|+|++|+++... ... .+.. ...+.+++..+++|.+. .+.++|+++.++ ++..........+..
T Consensus 192 ~~~~~li~De~~~~~~~~---~~~--~~~~--~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~~~~~~-- 261 (391)
T 3h14_A 192 AQGASFISDEIYHGIEYE---AKA--VTAL--ELTDECYVINSFSKYFSMTGWRVGWMVVPE-DQVRVVERIAQNMFI-- 261 (391)
T ss_dssp HTTCEEEEECTTTTCBSS---SCC--CCGG--GTCSSSEEEEESSSTTCCTTSCCEEEECCG-GGHHHHHHHHHHTTC--
T ss_pred HcCCEEEEECcchhcccC---CCC--cChh--hcCCCEEEEEechhccCCccceeEEEEeCH-HHHHHHHHHHhhhcc--
Confidence 999999999999876541 100 1111 12345677888999953 445578766544 333221111111110
Q ss_pred cCCCcccCCCCCchHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCe-eEEEEecCC--CCHHH
Q 009181 380 YVSPTVAGSRPGGLIAGAWAALMSL-GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDM-TIVAFGSDV--VDIFE 455 (541)
Q Consensus 380 ~~~~~~~gsr~~~~~a~~~~al~~l-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~-~~v~f~~~~--~~~~~ 455 (541)
+ ....+++++...+ +.+.+++..++..++++++.+.|+++ ++....++.. .++++.++. .+..+
T Consensus 262 --------~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (391)
T 3h14_A 262 --------C---APHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGAFYVYADVSDLTDDSRA 329 (391)
T ss_dssp --------C---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBTTEEEEECTTTCSCHHH
T ss_pred --------C---CCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCeeEEEEEecCccCCCHHH
Confidence 0 1122333333333 56778899999999999999999987 4444334443 455556553 47888
Q ss_pred HHHHHHhC-Cceecc---CCC---CCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 456 VNDIMSSK-GWHLNP---LQR---PNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 456 l~~~l~~~-G~~~~~---~~~---~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+.+.|.++ |+.+.. ++. ++++|++++. +.+++++++++|++++++..
T Consensus 330 ~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 330 FAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp HHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHhc
Confidence 99887775 976643 222 4789999997 66999999999999987644
No 97
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.93 E-value=2.7e-26 Score=242.62 Aligned_cols=290 Identities=11% Similarity=0.016 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEE
Q 009181 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (541)
Q Consensus 172 ~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~ 251 (541)
...++++++++ +|.+ .. + ++|+|+|+|+..+++++.. +| ++|+++.++|.++..++...|++++
T Consensus 58 ~~~~~~~~la~-~g~~-~~----v--~~~~G~t~a~~~~~~a~~~-----~g---d~Vlv~~~~h~s~~~~~~~~G~~~~ 121 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDY-DG----Y--FLVNGTTSGILSVIQSFSQ-----KK---GDILMARNVHKSVLHALDISQQEGH 121 (446)
T ss_dssp HHHHHHHHHCS-CTTE-EE----E--EESSHHHHHHHHHHHTTTT-----SS---SCEEECTTCCHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHh-cCCC-ce----E--EEeCCHHHHHHHHHHHhcC-----CC---CEEEEecCccHHHHHHHHHcCCeEE
Confidence 34567779999 9987 33 4 8999999999999998843 66 8999999999999999999999999
Q ss_pred EeeC--CCC----CccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCC
Q 009181 252 RVPV--DKE----FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY 325 (541)
Q Consensus 252 ~v~~--~~~----~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~ 325 (541)
.++. +++ +.+|+++| +++++++|+++++| ++|.+.|+++|+++|++||+++|+|++|++ .+.|...
T Consensus 122 ~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~~n-~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~--- 193 (446)
T 2x3l_A 122 FIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTYPN-YYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGF--- 193 (446)
T ss_dssp ECEEEECTTTSSEEEEEC----------CCEEEEESSC-TTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTS---
T ss_pred EEeCeeccccCcCCCCCHHHH---cCCCceEEEEECCC-CCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCC---
Confidence 9998 655 67899988 56789999999954 599999999999999999999999999987 4433221
Q ss_pred CCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh
Q 009181 326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (541)
Q Consensus 326 ~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg 405 (541)
+++....|+|+++.++||+++++.|+|+++.+++.+....+. .. + .....++.....++++.++++.+.
T Consensus 194 ---~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~--~~---~---~~~~~~s~~~~~~aal~~a~~~l~ 262 (446)
T 2x3l_A 194 ---PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENII--EY---L---SYFQTSSPSYLIMASLESAAQFYK 262 (446)
T ss_dssp ---CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHH--HH---H---HHHSCSSCCHHHHHHHHHHHHHHH
T ss_pred ---CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHH--HH---H---HHHcCCCchHHHHHHHHHHHHHHH
Confidence 233334467999999999888999999988876532211110 00 0 001123334444567777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH
Q 009181 406 QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV 485 (541)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~ 485 (541)
..+.++..++..++++++++. +++++.+.+...+++..++.+..++.+.|.++|+.+... ..+++|++++..++
T Consensus 263 ~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~-g~~~iRi~~~~~~t 336 (446)
T 2x3l_A 263 TYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELA-DDYQALAILPLWHH 336 (446)
T ss_dssp HCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEE-CSSCEEEECCCCCT
T ss_pred HhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEec-CCCEEEEEeecCCC
Confidence 555556788888888888877 778776544445777776667889999999999877522 23689999998766
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 009181 486 -AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 486 -e~id~~i~~L~~~~~~l~ 503 (541)
+++ +++++|+++++.+.
T Consensus 337 ~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 337 DDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp TCCC-CHHHHHHHHHTCCC
T ss_pred HHHH-HHHHHHHHHHHhhc
Confidence 889 99999999986653
No 98
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.93 E-value=1.5e-24 Score=226.64 Aligned_cols=322 Identities=12% Similarity=0.103 Sum_probs=224.9
Q ss_pred HHHHHHhhcccC-CCCcccchHHHHHHHHHHHHHHHHhCCC--C-CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcC
Q 009181 148 INEACSMFAHTN-PLHLDIFQSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG 223 (541)
Q Consensus 148 ~~~~~~~~~~~n-~~~~~~~~~~~~~e~ev~~~la~l~g~~--~-~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~G 223 (541)
+.+++...+... ..+|...++..++++.+.+++.+.+|.+ + ++ + ++|+||++|+..+++++.+ +|
T Consensus 55 v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~----v--~~t~g~~~a~~~~~~~~~~-----~g 123 (412)
T 2x5d_A 55 IVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESE----A--IVTIGSKEGLAHLMLATLD-----HG 123 (412)
T ss_dssp HHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTS----E--EEESCHHHHHHHHHHHHCC-----TT
T ss_pred HHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcC----E--EEcCChHHHHHHHHHHhCC-----CC
Confidence 444444443322 2234334556778887888888777863 3 33 6 9999999999999998742 56
Q ss_pred CCCCeEEecCCccchHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHH
Q 009181 224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGEL 298 (541)
Q Consensus 224 i~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~l 298 (541)
++|+++.++|+++...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|+++
T Consensus 124 ---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 200 (412)
T 2x5d_A 124 ---DTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVAL 200 (412)
T ss_dssp ---CEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred ---CEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHH
Confidence 8999999999999999999999999999976 3458999999999989999999999999999976 6899999
Q ss_pred HHHcCCEEEEeCCcccchhhhhhhcCCCCCC-CCcC-CCCceEEEeCCCCCCC-CCCCceEEEEeccccccccccccccc
Q 009181 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP-FDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEW 375 (541)
Q Consensus 299 a~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~-~~~~-~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~ 375 (541)
|++||+++|+|++|+++... |...+. ..+. ..+.+++..++||++. ++..+|+++. ++++..........+
T Consensus 201 ~~~~~~~li~De~~~~~~~~-----g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~ 274 (412)
T 2x5d_A 201 AKQYDVMVVHDLAYADIVYD-----GWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYH 274 (412)
T ss_dssp HHHHTCEEEEECTTTTCBCT-----TCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE-CHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEeccccccccC-----CCCCCChhhccCccCcEEEEecCccccCCcccceEEEEc-CHHHHHHHHHHHhhh
Confidence 99999999999999877541 110111 1111 1467899999999943 3334798776 444433211111100
Q ss_pred CCCccCCCcccCCCCCchHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC-C-
Q 009181 376 SGGLYVSPTVAGSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV-V- 451 (541)
Q Consensus 376 ~~~~~~~~~~~gsr~~~~~a~~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~-~- 451 (541)
.. +....+++++...+ +.+.+++..++..++++++.+.|+++ ++++..+....++++.++. .
T Consensus 275 ~~-------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~ 340 (412)
T 2x5d_A 275 DY-------------GTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAKIPEPYA 340 (412)
T ss_dssp CC-------------CCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEECCTTTG
T ss_pred cc-------------CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEEcCCccC
Confidence 00 01122444444444 34668888999999999999999987 7776644334467777743 3
Q ss_pred --CHHHHHHHHHh-CCceeccC---C--CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 452 --DIFEVNDIMSS-KGWHLNPL---Q--RPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 452 --~~~~l~~~l~~-~G~~~~~~---~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
+..++.+.|.+ +|+.+... + .++++|++++. +.+++++++++|+++++++..
T Consensus 341 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 341 HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhcCC
Confidence 67789998865 69766432 1 24789999997 669999999999999887543
No 99
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.93 E-value=3e-24 Score=220.59 Aligned_cols=285 Identities=11% Similarity=0.102 Sum_probs=209.7
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.++++ + ++|+|+++++.++++++ +| ++|+++.++|+++...++..|++++.+|
T Consensus 63 ~l~~~la~~~~~~~~~----v--~~~~g~~~al~~~~~~~-------~g---d~vl~~~p~y~~~~~~~~~~g~~~~~v~ 126 (364)
T 1lc5_A 63 HLHQALARHHQVPASW----I--LAGNGETESIFTVASGL-------KP---RRAMIVTPGFAEYGRALAQSGCEIRRWS 126 (364)
T ss_dssp HHHHHHHHHHTSCGGG----E--EEESSHHHHHHHHHHHH-------CC---SEEEEEESCCTHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCcCHHH----E--EECCCHHHHHHHHHHHc-------CC---CeEEEeCCCcHHHHHHHHHcCCeEEEEe
Confidence 4666888888887665 6 89999999999999887 24 7899999999999999999999999999
Q ss_pred CCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCC
Q 009181 255 VDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (541)
Q Consensus 255 ~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~ 329 (541)
.++ ++.+ ++++.+++++++++|++++|+||+|.+.| +++|.++|++||+++++|++|+++... + .+.
T Consensus 127 ~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-----~--~~~ 198 (364)
T 1lc5_A 127 LREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH-----E--TGF 198 (364)
T ss_dssp CCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT-----C--CCS
T ss_pred CCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC-----c--cch
Confidence 975 3333 57677777778899999999999999988 899999999999999999999876531 1 111
Q ss_pred CCc-CCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhH-
Q 009181 330 FDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ- 406 (541)
Q Consensus 330 ~~~-~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~- 406 (541)
++. ...+.+++..++||++. ++..+|++++.++++..........| +....+++++...+..
T Consensus 199 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~l~~~ 263 (364)
T 1lc5_A 199 IPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPW---------------SVNALAALAGEVALQDS 263 (364)
T ss_dssp GGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTT---------------CSCHHHHHHHHHGGGCH
T ss_pred hhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCCC---------------CCCHHHHHHHHHHHhCc
Confidence 221 23567888999999943 23347986635555443221111111 1113355555555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCC-----CCCeEEEEec
Q 009181 407 EGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQ-----RPNSIHICVT 481 (541)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~-----~~~~iRi~~~ 481 (541)
+.+++..++..++++++.+.|+++|++++. ++..+++++..++ +..++.+.|.++|+.+.... .++++|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~-~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~ 341 (364)
T 1lc5_A 264 AWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER-EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR 341 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC-TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCeEEEEECCC-cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC
Confidence 567888888899999999999998899876 4566777777653 34578889999998765321 2478999986
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 009181 482 LQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 482 ~~~~e~id~~i~~L~~~~~~l 502 (541)
+.++++++++.|+++++++
T Consensus 342 --~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 342 --SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp --CHHHHHHHHHHHHHHC---
T ss_pred --CHHHHHHHHHHHHHHhhcc
Confidence 3688999999999987665
No 100
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.93 E-value=5.8e-25 Score=228.75 Aligned_cols=295 Identities=14% Similarity=0.084 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeE
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v 250 (541)
....++++.+++++|.+ .. +++++||+++..+++++. ++| ++|+++.+.|+++..+++..|+++
T Consensus 90 ~~~~~l~~~la~~~g~~-~~-------i~~~sGs~a~~~~~~~~~-----~~g---d~v~~~~~~~~~~~~~~~~~g~~~ 153 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-DA-------ILYSSCFDANGGLFETLL-----GAE---DAIISDALNHASIIDGVRLCKAKR 153 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-EE-------EEESCHHHHHHTTHHHHC-----CTT---CEEEEETTCCHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHHHhCCC-cE-------EEeCChHHHHHHHHHHHc-----CCC---CEEEEcchhHHHHHHHHHHcCCce
Confidence 44556777899999987 32 455666889999888874 256 899999999999999999999999
Q ss_pred EEeeCCCCCccCHHHHHHhhcc------CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc-cchhhhhhhc
Q 009181 251 WRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG-GFVLPFAKKL 323 (541)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~i~~------~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g-g~~~~f~~~~ 323 (541)
+.+|. +|+++|++++++ ++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+ ++..+ .
T Consensus 154 ~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~----~ 224 (401)
T 1fc4_A 154 YRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGE----N 224 (401)
T ss_dssp EEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSST----T
T ss_pred EEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCC----C
Confidence 99884 489999999976 79999999999999999999999999999999999999996 55321 0
Q ss_pred CCCCC-CCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHH
Q 009181 324 GYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (541)
Q Consensus 324 g~~~p-~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~ 402 (541)
|...+ .++.. +++|+++.++||++.++.| |+++. ++++..........|. ..++.+....+++.++++
T Consensus 225 g~~~~~~~~~~-~~~di~~~s~sK~~~~~~g-G~~~~-~~~~~~~l~~~~~~~~--------~~~~~~~~~~~a~~~~l~ 293 (401)
T 1fc4_A 225 GRGSHEYCDVM-GRVDIITGTLGKALGGASG-GYTAA-RKEVVEWLRQRSRPYL--------FSNSLAPAIVAASIKVLE 293 (401)
T ss_dssp SCCHHHHTTCT-TCCSEEEEESSSTTCSSSC-EEEEE-CHHHHHHHHHHCHHHH--------HSCCCCHHHHHHHHHHHH
T ss_pred CCccHHHcCCC-cCCcEEEecchhhccCCCC-EEEEc-CHHHHHHHHHhCcCce--------eCCCCCHHHHHHHHHHHH
Confidence 10000 02222 3679999999999657776 87666 4544432211111110 001111112333344444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC-CCHHHHHHHHHhCCceeccCCC------CCe
Q 009181 403 SLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV-VDIFEVNDIMSSKGWHLNPLQR------PNS 475 (541)
Q Consensus 403 ~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~~~G~~~~~~~~------~~~ 475 (541)
.+. ..++..++..++++++.+.|+++ ++++. ++..+++++..++ .+..++.+.|.++|+.+..... .++
T Consensus 294 ~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~ 369 (401)
T 1fc4_A 294 MVE--AGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQAR 369 (401)
T ss_dssp HHH--TCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEE
T ss_pred HHh--cCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCce
Confidence 332 14678888999999999999988 77766 5567788887754 2567889999999987654321 257
Q ss_pred EEEEecCCCH-HHHHHHHHHHHHHHHHHHcC
Q 009181 476 IHICVTLQHV-AVVDVFLRDLRESVETVKQN 505 (541)
Q Consensus 476 iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~ 505 (541)
+|++++..++ +++++++++|+++++++...
T Consensus 370 iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 400 (401)
T 1fc4_A 370 IRTQMSAAHTPEQITRAVEAFTRIGKQLGVI 400 (401)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999986544 99999999999999877543
No 101
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.93 E-value=3.6e-25 Score=226.65 Aligned_cols=303 Identities=13% Similarity=0.027 Sum_probs=215.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcH-HHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHh
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGG-TESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ 244 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Gg-t~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~ 244 (541)
+++..++..++++++++++|.+..+ ++ ++|+|+ |+|+..++.++.... ++| ++|+++...|++.. .++
T Consensus 43 ~~~~~~~~~~l~~~la~~~g~~~~~---~v--~~~~g~gt~al~~~~~~l~~~~--~~g---~~vi~~~~~~~~~~-~~~ 111 (360)
T 1w23_A 43 SQSYEEVHEQAQNLLRELLQIPNDY---QI--LFLQGGASLQFTMLPMNLLTKG--TIG---NYVLTGSWSEKALK-EAK 111 (360)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTE---EE--EEESSHHHHHHHHHHHHHCCTT--CEE---EEEECSHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCc---eE--EEECCcchHHHHHHHHHhcCCC--Ccc---cEEEecchhHHHHH-HHH
Confidence 5677778888999999999997322 25 899998 999999998875311 123 67888888887744 467
Q ss_pred hcCCeEEEeeCCC-CCccCHHHHHH-hhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhh
Q 009181 245 YFNIKLWRVPVDK-EFRADVKAIKK-YINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (541)
Q Consensus 245 ~~G~~v~~v~~~~-~~~~d~~~Le~-~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~ 322 (541)
.+| +++.+|+++ ++.+|+++|++ +++++|++|++++++||+|.+.| + ++++||+++++|++|+.+..|
T Consensus 112 ~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~~---- 181 (360)
T 1w23_A 112 LLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSRP---- 181 (360)
T ss_dssp TTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSSC----
T ss_pred HhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCCC----
Confidence 789 999999985 66799999999 99989999999999999999865 3 333899999999999765432
Q ss_pred cCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccC---CCcccCCCCCchHHHHHH
Q 009181 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV---SPTVAGSRPGGLIAGAWA 399 (541)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~---~~~~~gsr~~~~~a~~~~ 399 (541)
++.. ..|+++.++||+ ++|.|+|+++.+++.. ....... .|...... .....++.+...++++.+
T Consensus 182 -------~~~~--~~di~~~s~sK~-~~~~G~G~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (360)
T 1w23_A 182 -------LKVN--QFGMIYAGAQKN-LGPSGVTVVIVKKDLL-NTKVEQV-PTMLQYATHIKSDSLYNTPPTFSIYMLRN 249 (360)
T ss_dssp -------CCGG--GCSEEEEETTTT-TSCTTCEEEEEEHHHH-CSCCTTC-CGGGCHHHHHHTTTCSSCCCHHHHHHHHH
T ss_pred -------cCcc--cCCEEEEEcccc-cCCCCcEEEEEcHHHH-hhcccCC-cchhhhhhhhhccCCCCCCCHHHHHHHHH
Confidence 2222 127899999998 6788999888765432 2111111 11000000 001112222233446666
Q ss_pred HHHHHhHH-HHHHHHHHHHHHHHHHHHHhhcCCCe-EEecCC--Cee-EEEEecCCC-CHHHHHHHHHhCCceeccC-CC
Q 009181 400 ALMSLGQE-GYLENTKAIMEVSESIQKGIKEIPEL-FIIGRP--DMT-IVAFGSDVV-DIFEVNDIMSSKGWHLNPL-QR 472 (541)
Q Consensus 400 al~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~--~~~-~v~f~~~~~-~~~~l~~~l~~~G~~~~~~-~~ 472 (541)
+++.+... +++++.++..++++++.+.|++++++ ....++ ..+ +++|..++. +..++.+.|.++|+.+... ..
T Consensus 250 al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 329 (360)
T 1w23_A 250 VLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRS 329 (360)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCC
Confidence 77665555 78999999999999999999998765 554222 234 888887642 4567888899999876432 23
Q ss_pred CCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 473 PNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 473 ~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
++++|++++..++ ++++++++.|++++++
T Consensus 330 ~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 330 VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 5789999987655 9999999999988754
No 102
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=5.1e-25 Score=226.88 Aligned_cols=316 Identities=14% Similarity=0.042 Sum_probs=215.4
Q ss_pred HHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009181 148 INEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227 (541)
Q Consensus 148 ~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~ 227 (541)
+.+++...+.... +...++..+ +++.+++++|.+ . + ++|+|||+|+..++++++- ++| +
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~----l~~~la~~~~~~--~----~--~~~~~gt~a~~~~~~~~~~----~~g---d 79 (374)
T 3uwc_A 21 YLNDLREFIKTAD--FTLGAELEK----FEKRFAALHNAP--H----A--IGVGTGTDALAMSFKMLNI----GAG---D 79 (374)
T ss_dssp HHHHHHHHHHHTC--CSSCHHHHH----HHHHHHHHTTCS--E----E--EEESCHHHHHHHHHHHTTC----CTT---C
T ss_pred HHHHHHHHHHcCC--cccChhHHH----HHHHHHHHhCCC--c----E--EEeCCHHHHHHHHHHHcCC----CCC---C
Confidence 4444444443332 223445444 555888888876 2 3 8999999999999988721 255 8
Q ss_pred eEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEE
Q 009181 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (541)
Q Consensus 228 ~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lh 307 (541)
+|+++.++|+++..+++..|++++.+++++++.+|++++++++++++++|+ ++||+|.+.|+++|.++|++||+++|
T Consensus 80 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li 156 (374)
T 3uwc_A 80 EVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIV 156 (374)
T ss_dssp EEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEE
T ss_pred EEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999988899999999999999988877 78899999999999999999999999
Q ss_pred EeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCC--CCCCCC-CCceEEEEecccccccccccccccCCCccCCCc
Q 009181 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVH--KYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384 (541)
Q Consensus 308 vD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~h--K~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (541)
+|++|+.+.. +.. .......|+++.++| |++ ++ ..+|+++.+++++...............+ ...
T Consensus 157 ~D~~~~~g~~-~~~---------~~~~~~~d~~~~s~~~~K~l-~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 224 (374)
T 3uwc_A 157 EDACQTILGR-IND---------KFVGSWGQFACFSLHPLKNL-NVWSDAGVIITHSDEYAEKLRLYRNHGLINRD-VCV 224 (374)
T ss_dssp EECTTCTTCE-ETT---------EETTSSSSEEEEECSSSSSS-CCSSCCEEEEESCHHHHHHHHHHTBTTEEETT-EES
T ss_pred EeCCCccCce-eCC---------eeccccccEEEEeCCCCCcC-CccceeEEEEeCCHHHHHHHHHHHhcCccccC-ccc
Confidence 9999975433 100 000111488888877 995 55 34666666655443221111100000000 000
Q ss_pred ccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCC-eEEecCCCe---eEEEEecCCCCHHHHHHHH
Q 009181 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPE-LFIIGRPDM---TIVAFGSDVVDIFEVNDIM 460 (541)
Q Consensus 385 ~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~v~~~~~~---~~v~f~~~~~~~~~l~~~l 460 (541)
..|...... .+.+++.....+++++..++..++++++.+.|+++++ +++...+.. .++.|.....+..++.+.|
T Consensus 225 ~~~~~~~~~--~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 302 (374)
T 3uwc_A 225 EYGINCRMD--TIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYL 302 (374)
T ss_dssp SCCCBCBCC--HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHH
T ss_pred cccccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHH
Confidence 011111112 3444444444567788899999999999999999887 887644331 1122222223678999999
Q ss_pred HhCCceeccCC-------------------CC-------CeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 461 SSKGWHLNPLQ-------------------RP-------NSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 461 ~~~G~~~~~~~-------------------~~-------~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
.++|+.+.... .| +.+|++++..++ +|++++++.|++++++
T Consensus 303 ~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 303 KDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99997654321 11 579998887766 9999999999998864
No 103
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.93 E-value=9.6e-24 Score=221.66 Aligned_cols=308 Identities=10% Similarity=0.019 Sum_probs=215.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCC-----CCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKA-----SGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~-----~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ 240 (541)
..|..++.+++.+++.+.+|.+... ..+++ ++|+|+++++.++++++.+ +| ++|+++.++|+++.
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i--~~t~G~~~al~~~~~~l~~-----~g---d~Vlv~~p~y~~~~ 146 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDL--CVTSGSQQGLCKVFEMIIN-----PG---DNVLLDEPAYSGTL 146 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEE--EEESSHHHHHHHHHHHHCC-----TT---CEEEEESSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcE--EEeCcHHHHHHHHHHHhCC-----CC---CEEEEeCCCcHHHH
Confidence 3455677888888999988986410 00136 9999999999999999853 66 89999999999999
Q ss_pred HHHhhcCCeEEEeeCCCCCccCHHHHHHhhc------------cCceEEEe-ecCCCCCccccCHH---HHHHHHHHcCC
Q 009181 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYIN------------RNTVLIVG-SAPGFPHGIIDPIQ---ELGELALSHGT 304 (541)
Q Consensus 241 ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~------------~~t~~vv~-~~~~~~~G~id~i~---~I~~la~~~~i 304 (541)
..++..|++++.+|+++++ +|+++|+++++ +++++|++ ++|+||||.+.+.+ +|+++|++||+
T Consensus 147 ~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~ 225 (425)
T 2r2n_A 147 QSLHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225 (425)
T ss_dssp HHHGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999997654 89999999987 35777765 78999999998855 99999999999
Q ss_pred EEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCc
Q 009181 305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384 (541)
Q Consensus 305 ~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (541)
++++|++|+.+.+. .... .+-..+...+.+++..+++|++..+..+|+++.+++ +..........+.
T Consensus 226 ~li~De~~~~~~~~---g~~~-~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~-l~~~l~~~~~~~~-------- 292 (425)
T 2r2n_A 226 LIIEDDPYYFLQFN---KFRV-PTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP-LIERVILHIQVST-------- 292 (425)
T ss_dssp EEEEECTTGGGBSS---SSCC-CCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH-HHHHHHHHHHTTT--------
T ss_pred EEEEECCcccccCC---CCCC-CCccccCCCCCEEEEccchhhccCccceEEEecCHH-HHHHHHHHHHHhc--------
Confidence 99999999865431 1000 111222234557888899999542334798777643 3322111100000
Q ss_pred ccCCCCCchHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHhhc-CCCeE-EecCCCeeEEEEecCCC-CHH
Q 009181 385 VAGSRPGGLIAGAWAALMSLGQ-------EGYLENTKAIMEVSESIQKGIKE-IPELF-IIGRPDMTIVAFGSDVV-DIF 454 (541)
Q Consensus 385 ~~gsr~~~~~a~~~~al~~lg~-------~g~~~~~~~~~~~a~~l~~~L~~-~~~~~-v~~~~~~~~v~f~~~~~-~~~ 454 (541)
.+....++.++...+.. +.+++..++..++++++.+.|++ +|++. +..+....++++.+++. +..
T Consensus 293 -----~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~ 367 (425)
T 2r2n_A 293 -----LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVK 367 (425)
T ss_dssp -----CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCH
T ss_pred -----CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHH
Confidence 00112244444433322 34566667778888999999987 67874 44444566777777642 444
Q ss_pred H-HHHHHHhCCceecc---CC-----CCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 455 E-VNDIMSSKGWHLNP---LQ-----RPNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 455 ~-l~~~l~~~G~~~~~---~~-----~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
+ +.+.|.++|+.+.. +. ..+++|++++..+.+++++++++|++++++.
T Consensus 368 ~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 368 ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp HHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 5 67888899976542 22 2368999998656799999999999988653
No 104
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.93 E-value=6e-25 Score=224.83 Aligned_cols=298 Identities=12% Similarity=-0.012 Sum_probs=213.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEE-cCcHHHHHHHHHHHHHHHHHhhcCCCCCe---EEecCCccchHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPE---MIIPVSAHSAYDK 241 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~-t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~---vi~~~~~h~s~~k 241 (541)
.+...++.+++++.+++++|+++.. ++ +| |+|||+++.+++..+. +| ++ |+.+...|. +..
T Consensus 45 ~~~~~~~~~~~r~~la~ll~~~~~~---~v--~f~t~~~T~a~n~~~~~~~------~~---~~~~~i~~~~~~~~-~~~ 109 (361)
T 3m5u_A 45 TKVFEEVHFGAQEKAKKLYELNDDY---EV--LFLQGGASLQFAMIPMNLA------LN---GVCEYANTGVWTKK-AIK 109 (361)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTE---EE--EEESSHHHHHHHHHHHHHC------CS---SCEEEEECSHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCc---eE--EEEcCcHHHHHHHHHHhcC------CC---CeEEEEeCCHHHHH-HHH
Confidence 4556777788999999999997542 25 77 9999999999998763 23 43 333344454 334
Q ss_pred HHhhcCCeEEEeeCCCCCc--cCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 242 AAQYFNIKLWRVPVDKEFR--ADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 242 a~~~~G~~v~~v~~~~~~~--~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
.++..|++++.+++++++. +++++ + |+++|++|.+++.+|.+|++.|. +++ +|+++|||++++.+..
T Consensus 110 ~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~-- 178 (361)
T 3m5u_A 110 EAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR-- 178 (361)
T ss_dssp HHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS--
T ss_pred HHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC--
Confidence 5566799999999988664 56766 4 89999999999999999998552 333 4999999999754433
Q ss_pred hhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCC-Ccc-CCCcccCCCCCchHHHH
Q 009181 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG-GLY-VSPTVAGSRPGGLIAGA 397 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~gsr~~~~~a~~ 397 (541)
++|+. .+|++++++|||+ +|+|+|+++++++.+....-...+.+.. ... ......|+.+-..++++
T Consensus 179 ---------~id~~--~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l 246 (361)
T 3m5u_A 179 ---------KVDFS--NIALFYGGVQKNA-GISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMF 246 (361)
T ss_dssp ---------CCCCT--TEEEEEEETTTTS-SCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHH
T ss_pred ---------CCCcc--cCCEEEEechhcc-CCCccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHH
Confidence 35544 5899999999996 8999999888765432110000011100 000 01112244444567788
Q ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhhcCCCe-EEecCCC---eeEEEEecCC-CCH-HHHHHHHHhCCceeccC
Q 009181 398 WAALMSLGQE-GYLENTKAIMEVSESIQKGIKEIPEL-FIIGRPD---MTIVAFGSDV-VDI-FEVNDIMSSKGWHLNPL 470 (541)
Q Consensus 398 ~~al~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~~---~~~v~f~~~~-~~~-~~l~~~l~~~G~~~~~~ 470 (541)
.++++++... |++++.++..++++++++.|++++++ ++..++. ..+++|..++ ... .++...|.++|+.+..-
T Consensus 247 ~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g 326 (361)
T 3m5u_A 247 NLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKG 326 (361)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecC
Confidence 8999988777 89999999999999999999999776 6654432 4689999875 222 46788899999876432
Q ss_pred -CCCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 471 -QRPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 471 -~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
...+.+|+|+..+++ +|+|++++.|+++.++
T Consensus 327 ~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 327 HRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 222579999998877 9999999999998765
No 105
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.93 E-value=4.1e-24 Score=219.20 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=210.2
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.++++ + ++|+|||+|+..+++++.+ +| ++|+++.++|+++...++..|++++.+|
T Consensus 69 ~lr~~la~~~g~~~~~----i--~~t~g~~~al~~~~~~l~~-----~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~v~ 134 (360)
T 3hdo_A 69 KLREVAGELYGFDPSW----I--IMANGSDEVLNNLIRAFAA-----EG---EEIGYVHPSYSYYGTLAEVQGARVRTFG 134 (360)
T ss_dssp HHHHHHHHHHTCCGGG----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEESSSCTHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHhCcCcce----E--EEcCCHHHHHHHHHHHHhC-----CC---CEEEEcCCChHHHHHHHHHCCCEEEEee
Confidence 4666888888987665 6 9999999999999998753 66 8999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc-C
Q 009181 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF-S 333 (541)
Q Consensus 255 ~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~-~ 333 (541)
+++++.+ ++++++++ ++++++++|+||+|.+.|+++|.++|+++|+++++|++|+.+.- . + .... .
T Consensus 135 ~~~~~~~--~~l~~~~~--~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~----~-~----~~~~~~ 201 (360)
T 3hdo_A 135 LTGDFRI--AGFPERYE--GKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAE----S-N----ALELVR 201 (360)
T ss_dssp BCTTSSB--TTCCSSBC--SSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSS----C-C----CTHHHH
T ss_pred CCCCCCH--HHHHhhcC--CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCC----c-c----hhHHhc
Confidence 9877766 55555443 56899999999999999999999999999999999999986421 0 1 1111 1
Q ss_pred CCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-HHHHHH
Q 009181 334 VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLE 411 (541)
Q Consensus 334 ~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg-~~g~~~ 411 (541)
..+.+++..+++|.+. ++.++|+++. ++++..........| +....+++++...+. .+.+++
T Consensus 202 ~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~a~~~~l~~~~~~~~ 265 (360)
T 3hdo_A 202 RHENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDHY---------------NLDRLAQAACVAALRDQAYLSE 265 (360)
T ss_dssp HCSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSC---------------CSCHHHHHHHHHHHHCHHHHHH
T ss_pred cCCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCCC---------------CCCHHHHHHHHHHhcCHHHHHH
Confidence 2345677889999942 4455787665 444433221111111 111224444443332 456788
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCC---CCCeEEEEecCCCHHHH
Q 009181 412 NTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQ---RPNSIHICVTLQHVAVV 488 (541)
Q Consensus 412 ~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~---~~~~iRi~~~~~~~e~i 488 (541)
..++..++++++.+.|+++ ++++. ++..+++++...+.+..++.+.|.++|+.+.... .++++|++++ +.+|+
T Consensus 266 ~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~ 341 (360)
T 3hdo_A 266 CCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEM 341 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHH
Confidence 9999999999999999998 88875 5567778888776788999999999998776533 3478999988 56999
Q ss_pred HHHHHHHHHHHH
Q 009181 489 DVFLRDLRESVE 500 (541)
Q Consensus 489 d~~i~~L~~~~~ 500 (541)
|+++++|+++.+
T Consensus 342 ~~l~~al~~~~~ 353 (360)
T 3hdo_A 342 EQTLAALKEIGE 353 (360)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 106
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.93 E-value=1.3e-24 Score=228.28 Aligned_cols=298 Identities=12% Similarity=0.151 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHHHHhC----CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH
Q 009181 168 SVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243 (541)
Q Consensus 168 ~~~~~e~ev~~~la~l~g----~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~ 243 (541)
+..++++.+.+++.+.+| .++++ + ++|+|+++++..+++++.+ +| ++|+++.++|.++...+
T Consensus 84 g~~~lr~~la~~~~~~~g~~~~~~~~~----i--~~~~G~~~ai~~~~~~~~~-----~g---d~Vl~~~p~y~~~~~~~ 149 (428)
T 1iay_A 84 GLPEFRKAIAKFMEKTRGGRVRFDPER----V--VMAGGATGANETIIFCLAD-----PG---DAFLVPSPYYPAFNRDL 149 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTS----C--EEEEHHHHHHHHHHHHHCC-----TT---CEEEEESSCCTTHHHHT
T ss_pred CcHHHHHHHHHHHHHhcCCCCCCChhh----E--EEccChHHHHHHHHHHhCC-----CC---CeEEEccCCCcchHHHH
Confidence 466788878888887777 44444 6 8999999999999998853 66 89999999999988755
Q ss_pred -hhcCCeEEEeeCCC--CCccCHHHHHHhhcc------CceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCC
Q 009181 244 -QYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLC 311 (541)
Q Consensus 244 -~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~------~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a 311 (541)
...|++++.+|.++ ++.+|+++|++++++ ++++|++++|+||+|.+.| +++|.++|++||+++|+|++
T Consensus 150 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea 229 (428)
T 1iay_A 150 RWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEI 229 (428)
T ss_dssp TTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECT
T ss_pred HHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecc
Confidence 47899999999873 568999999999974 6899999999999999999 99999999999999999999
Q ss_pred cccchhhhhhhcCCCCCCC-CcCC------CCce--EEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCcc
Q 009181 312 LGGFVLPFAKKLGYPIPPF-DFSV------QGVT--SISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLY 380 (541)
Q Consensus 312 ~gg~~~~f~~~~g~~~p~~-~~~~------~gvd--sis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~ 380 (541)
|+++.+. ..+ .+.+ .... .+.| ++..++||+ ++..| +|+++..++++..........|.
T Consensus 230 ~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~d~viv~~s~sK~-~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~---- 299 (428)
T 1iay_A 230 YAATVFD---TPQ--FVSIAEILDEQEMTYCNKDLVHIVYSLSKD-MGLPGFRVGIIYSFNDDVVNCARKMSSFGL---- 299 (428)
T ss_dssp TGGGCCS---SSC--CCCHHHHHTSGGGTTSCTTSEEEEEESTTT-SSCGGGCEEEEEESCHHHHHHHHHHHTTSC----
T ss_pred ccccccC---CCC--ccCHHHhccccccccCCCCcEEEEecchhh-cCCCCceEEEEEeCCHHHHHHHHHHHhccc----
Confidence 9875431 000 0011 1111 1245 778899998 44444 69877756554432211111110
Q ss_pred CCCcccCCCCCchHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCC----
Q 009181 381 VSPTVAGSRPGGLIAGAWAALMSLGQ-----EGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV---- 451 (541)
Q Consensus 381 ~~~~~~gsr~~~~~a~~~~al~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~---- 451 (541)
. ...++.++...+.. +.+++..+++.++++++.+.|+++ ++++..+....++++.+.+.
T Consensus 300 ------~-----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~ 367 (428)
T 1iay_A 300 ------V-----STQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRES 367 (428)
T ss_dssp ------C-----CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSS
T ss_pred ------C-----CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEechhhcCCC
Confidence 0 12244444444432 256778888899999999999988 77765443566777776532
Q ss_pred ---CHHHHHHHHHhC-CceeccC---C--CCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 452 ---DIFEVNDIMSSK-GWHLNPL---Q--RPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 452 ---~~~~l~~~l~~~-G~~~~~~---~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
+..++.+.|.++ |+.+... . .++++|++++..+.+++++++++|++++++
T Consensus 368 ~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 368 TFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp SHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 245788888876 9766432 1 146899999854569999999999998754
No 107
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.93 E-value=5.9e-25 Score=226.63 Aligned_cols=292 Identities=14% Similarity=0.049 Sum_probs=202.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.+ . + ++|+|||+|+..+++++.- ++| ++|+++.++|+++..+++..|++++.++
T Consensus 40 ~l~~~la~~~~~~--~----~--i~~~sgt~al~~~l~~l~~----~~g---d~Vi~~~~~~~~~~~~~~~~g~~~~~~~ 104 (373)
T 3frk_A 40 KFEQEFADYCNVN--Y----C--IGCGNGLDALHLILKGYDI----GFG---DEVIVPSNTFIATALAVSYTGAKPIFVE 104 (373)
T ss_dssp HHHHHHHHHHTSS--E----E--EEESCHHHHHHHHHHHTTC----CTT---CEEEEETTSCTHHHHHHHHHSCEEEEEC
T ss_pred HHHHHHHHHhCCC--e----E--EEeCCHHHHHHHHHHHcCC----CCc---CEEEECCCCcHHHHHHHHHcCCEEEEEe
Confidence 3555888888875 2 3 8999999999999998721 255 8999999999999999999999999999
Q ss_pred CC-CCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcC
Q 009181 255 VD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS 333 (541)
Q Consensus 255 ~~-~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~ 333 (541)
++ +++.+|+++|++++++++++|+ ++||+|.+.|+++|.++|++||+++|+|++|+.+.. + +..
T Consensus 105 ~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~-----------~~~ 169 (373)
T 3frk_A 105 PDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL-Y-----------KGM 169 (373)
T ss_dssp EETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE-E-----------TTE
T ss_pred ccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE-E-----------CCE
Confidence 98 5889999999999999998888 566899999999999999999999999999975433 1 111
Q ss_pred CCC--ceEEEeC--CCCCCCCC-CCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHH
Q 009181 334 VQG--VTSISVD--VHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (541)
Q Consensus 334 ~~g--vdsis~~--~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g 408 (541)
..| .|+++++ .||++ ++ ...|+++.+++++..........+... .......|...... .+.+++.....++
T Consensus 170 ~~~~~~d~~~~S~~~~K~l-~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~g~~~~~~--~~~aa~~~~~~~~ 245 (373)
T 3frk_A 170 KVGSLGDAAGFSFYPAKNL-GSLGDGGAVVTNDKDLAEKIKALSNYGSEK-KYHHIYKGFNSRLD--ELQAGFLRVKLKY 245 (373)
T ss_dssp ETTSSSSEEEEECCTTSSS-CCSSSCEEEEESCHHHHHHHHHHHBTTCSB-TTBCCSCCCBCCCC--HHHHHHHHHHHHT
T ss_pred eccccccEEEEeCcCCCcc-CccceeEEEEeCCHHHHHHHHHHHhcCccc-CCccccccccCCCC--HHHHHHHHHHHHH
Confidence 112 3555555 77995 55 445665555554432211111110000 00111222222222 3444444455677
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC---eeEEEEecCCCCHHHHHHHHHhCCceeccCC--------------
Q 009181 409 YLENTKAIMEVSESIQKGIKEIPELFIIGRPD---MTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQ-------------- 471 (541)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~---~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~-------------- 471 (541)
+++..++..++++++.+.|++++ +++...+. ...+.|.....+..++.+.|.++|+.+....
T Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~ 324 (373)
T 3frk_A 246 LDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLG 324 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcC
Confidence 88899999999999999999986 77653332 1222222222367899999999997654211
Q ss_pred -----CC-------CeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 472 -----RP-------NSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 472 -----~~-------~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
.| +.+|++++..++ +|++++++.|+++..+
T Consensus 325 ~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 325 FKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp CCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred CCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 01 579999987776 9999999999887543
No 108
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.93 E-value=1.1e-24 Score=227.25 Aligned_cols=301 Identities=13% Similarity=0.084 Sum_probs=219.6
Q ss_pred chHHHHHHHHHHHHHHHHhCCC--C-CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~--~-~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka 242 (541)
.++..++++.+.+++.+.+|.+ + ++ + ++|+|+++++..+++++.+ +| ++|+++.+.|+++..+
T Consensus 84 ~~g~~~lr~~ia~~~~~~~g~~~~~~~~----v--~~t~G~~~al~~~~~~l~~-----~g---d~Vl~~~p~y~~~~~~ 149 (404)
T 2o1b_A 84 FHGKEAFKQAIVDFYQRQYNVTLDKEDE----V--CILYGTKNGLVAVPTCVIN-----PG---DYVLLPDPGYTDYLAG 149 (404)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCTTTS----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEEESCCSSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCccc----E--EEcCCcHHHHHHHHHHhcC-----CC---CEEEEcCCCchhHHHH
Confidence 3456788888888888888976 2 33 5 8999999999999998752 56 8999999999999999
Q ss_pred HhhcCCeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhh
Q 009181 243 AQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLP 318 (541)
Q Consensus 243 ~~~~G~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~ 318 (541)
++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.| +++|+++|++||+++++|++|+.+...
T Consensus 150 ~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 229 (404)
T 2o1b_A 150 VLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFD 229 (404)
T ss_dssp HHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSS
T ss_pred HHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence 999999999999986 5578999999999888999999999999999976 789999999999999999999876531
Q ss_pred hhhhcCCCCCCCCcC-CCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHH
Q 009181 319 FAKKLGYPIPPFDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG 396 (541)
Q Consensus 319 f~~~~g~~~p~~~~~-~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~ 396 (541)
|...+..... ..+.+++..++||++. ++..+|+++. ++++..........+.. + ....+
T Consensus 230 -----g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~----------~---~~~~~ 290 (404)
T 2o1b_A 230 -----AKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG-NKDMIQALKKYQTHTNA----------G---MFGAL 290 (404)
T ss_dssp -----SCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHHHHHCC----------C---CCHHH
T ss_pred -----CCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec-CHHHHHHHHHHHhhccC----------C---CCHHH
Confidence 1101111221 1256888999999943 2334798665 44443322111111110 0 01224
Q ss_pred HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC-CCHHHHHHHHH-hCCceecc---
Q 009181 397 AWAALMSL--GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV-VDIFEVNDIMS-SKGWHLNP--- 469 (541)
Q Consensus 397 ~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~-~~G~~~~~--- 469 (541)
++++...+ +.+.+++..++..++++++.+.|+++ ++++..+....++++.++. .+..++.+.|. ++|+.+..
T Consensus 291 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~ 369 (404)
T 2o1b_A 291 QDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKP 369 (404)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchh
Confidence 44444444 35678888888999999999999988 7887654444457777653 46778888877 57976643
Q ss_pred CC--CCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 470 LQ--RPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 470 ~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
++ .++++|++++. +.+++++++++|++++++
T Consensus 370 f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 370 FGENGNRYVRISLAL-DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp GCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGG
T ss_pred hCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 22 25789999986 558999999999887654
No 109
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.93 E-value=8.4e-25 Score=242.12 Aligned_cols=310 Identities=11% Similarity=0.029 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH-HhhcCCeEE
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-AQYFNIKLW 251 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka-~~~~G~~v~ 251 (541)
..++++.+++++|.+.. + ++++|+|+|+..++.++.. +| ++|+++.+.|.|+..+ +...|++++
T Consensus 175 i~e~e~~lA~~~gae~~-----i--~v~nGtt~an~~ai~al~~-----pG---D~VLv~~~~H~S~~~~~~~l~Ga~~v 239 (730)
T 1c4k_A 175 AVAAEKHAARVYNADKT-----Y--FVLGGSSNANNTVTSALVS-----NG---DLVLFDRNNHKSVYNSALAMAGGRPV 239 (730)
T ss_dssp HHHHHHHHHHHTTCSEE-----E--EESSHHHHHHHHHHHHHCC-----TT---CEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred HHHHHHHHHHHHCCCcE-----E--EECCHHHHHHHHHHHHhcC-----CC---CEEEEcCCchHHHHHHHHHHCCCEEE
Confidence 44577799999999753 3 7889999999999998753 67 9999999999999988 899999999
Q ss_pred EeeCCC-C----CccCHHHH-----HHhhccC------c----eEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCC
Q 009181 252 RVPVDK-E----FRADVKAI-----KKYINRN------T----VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (541)
Q Consensus 252 ~v~~~~-~----~~~d~~~L-----e~~i~~~------t----~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a 311 (541)
.++.+. + +.+|+++| +++|+++ + +++++++|| ++|.+.|+++|+++|++||+++|+|+|
T Consensus 240 ~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn-~~G~v~dl~~I~~la~~~g~~livDeA 318 (730)
T 1c4k_A 240 YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIYNAHEVVKRIGHLCDYIEFDSA 318 (730)
T ss_dssp EECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TTSEEECHHHHHHHHGGGBSEEEEECT
T ss_pred EEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC-CCCeecCHHHHHHHHHHcCCeEEEEcc
Confidence 988743 2 45789888 9999876 5 789999985 799999999999999999999999999
Q ss_pred cccchhhhhhhc-CCCCCCCCcCCCCce----EEEeCCCCCCCCCCCceEEEEeccccccc-ccccccccCCCccCCCcc
Q 009181 312 LGGFVLPFAKKL-GYPIPPFDFSVQGVT----SISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGLYVSPTV 385 (541)
Q Consensus 312 ~gg~~~~f~~~~-g~~~p~~~~~~~gvd----sis~~~hK~~~~p~g~g~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 385 (541)
|++.+. |.... |. ..++....|+| +++.++||++.++.++|+++++++.+... .+.....+. .......
T Consensus 319 h~~~~~-f~~~~~g~--~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~--~~~~~~~ 393 (730)
T 1c4k_A 319 WVGYEQ-FIPMMRNS--SPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN--NSFNLFM 393 (730)
T ss_dssp TCCGGG-SSGGGGGG--CTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH--HHHHHHS
T ss_pred cccccc-cCcccCCc--CcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHH--HHHHHhC
Confidence 975422 21100 00 02333334666 99999999987788888888887653110 000000000 0000011
Q ss_pred cCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCC------------------------
Q 009181 386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPD------------------------ 440 (541)
Q Consensus 386 ~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~------------------------ 440 (541)
.++.+...++++.++++.+..++..+..++..++++++++.|++ +++++++.+..
T Consensus 394 stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (730)
T 1c4k_A 394 STSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFE 473 (730)
T ss_dssp CSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCC
T ss_pred CCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccC
Confidence 23344455677777877776645577789999999999999998 78999876421
Q ss_pred ------------e---eE----EEEecC------------CCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHH
Q 009181 441 ------------M---TI----VAFGSD------------VVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVV 488 (541)
Q Consensus 441 ------------~---~~----v~f~~~------------~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~i 488 (541)
. .+ +.|..+ +.+..++.+.|.++|+.+...+ ...+|++++..++ +++
T Consensus 474 ~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~-~~~ir~~~s~g~t~e~i 552 (730)
T 1c4k_A 474 KGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD-LNSILFLMTPAETPAKM 552 (730)
T ss_dssp TTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC-SSEEEEECCTTCCHHHH
T ss_pred ccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECC-CCeEEEEeCCCCCHHHH
Confidence 0 11 556653 2467899999999998765443 4689999998777 999
Q ss_pred HHHHHHHHHHHHHHHc
Q 009181 489 DVFLRDLRESVETVKQ 504 (541)
Q Consensus 489 d~~i~~L~~~~~~l~~ 504 (541)
++++++|+++.+.+.+
T Consensus 553 ~~Ll~aL~~i~~~~~~ 568 (730)
T 1c4k_A 553 NNLITQLLQLQRLIEE 568 (730)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999887753
No 110
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.93 E-value=4.1e-24 Score=222.49 Aligned_cols=299 Identities=15% Similarity=0.152 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchH---HHHH
Q 009181 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY---DKAA 243 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~---~ka~ 243 (541)
+....+|+.+++++++++|.++.. +++++||+|+..+++++. ++| ++|+++.++|+++ ..++
T Consensus 65 ~~~~~~e~~ar~~la~~~g~~~~~-------i~~~sGt~a~~~~~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~ 129 (407)
T 2dkj_A 65 EVIDRVESLAIERAKALFGAAWAN-------VQPHSGSQANMAVYMALM-----EPG---DTLMGMDLAAGGHLTHGSRV 129 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHC-----CTT---CEEEEECGGGTCCGGGTCTT
T ss_pred hHHHHHHHHHHHHHHHHhCCCcce-------EEecchHHHHHHHHHHhc-----CCC---CEEEEecccccCccchHHHH
Confidence 334466766778999999998653 344455779999999884 256 8999999999887 4566
Q ss_pred hhcCCeEEEeeC--CC-CCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 244 QYFNIKLWRVPV--DK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 244 ~~~G~~v~~v~~--~~-~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
+..|..++.+++ ++ ++.+|+++|++++++ ++++|+++.|+|| .+.|+++|.++|++||+++|+|++|+.+..+
T Consensus 130 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~- 206 (407)
T 2dkj_A 130 NFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVA- 206 (407)
T ss_dssp SHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHH-
T ss_pred HhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccc-
Confidence 667774444444 43 788999999999985 8999998888886 7889999999999999999999999874432
Q ss_pred hhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHH
Q 009181 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~ 399 (541)
.|..... ...+|+++.++||++.++.+ |+++.+++++..........|. .++.....++++.+
T Consensus 207 ---~~~~~~~----~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~a~~~ 269 (407)
T 2dkj_A 207 ---AGLHPNP----LPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFPGI---------QGGPLEHVIAGKAV 269 (407)
T ss_dssp ---TTCSCCC----TTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTTTT---------CSSCCHHHHHHHHH
T ss_pred ---cCccCCc----cccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcccc---------cCCCcHHHHHHHHH
Confidence 1110001 12369999999998666765 8877764554432211111111 11111122345566
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-CCeeEEEEecCC--CCHHHHHHHHHhCCceeccC------
Q 009181 400 ALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR-PDMTIVAFGSDV--VDIFEVNDIMSSKGWHLNPL------ 470 (541)
Q Consensus 400 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~f~~~~--~~~~~l~~~l~~~G~~~~~~------ 470 (541)
++..+..+++++..++..++++++.+.|+++ +++++.+ ...+++++.++. .+..++.+.|.++|+.+...
T Consensus 270 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~ 348 (407)
T 2dkj_A 270 AFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDP 348 (407)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCcccc
Confidence 7766555788999999999999999999998 8988764 457788888753 36788999999999765432
Q ss_pred ---CCCCeEEEEecC-----CCHHHHHHHHHHHHHHHHH
Q 009181 471 ---QRPNSIHICVTL-----QHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 471 ---~~~~~iRi~~~~-----~~~e~id~~i~~L~~~~~~ 501 (541)
..++++|++++. .+.+++++++++|++++++
T Consensus 349 ~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 349 KPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp SCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 125689999975 3459999999999999876
No 111
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.5e-25 Score=232.17 Aligned_cols=319 Identities=15% Similarity=0.138 Sum_probs=224.4
Q ss_pred HHHHHHHhhccc-CCCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcC
Q 009181 147 LINEACSMFAHT-NPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG 223 (541)
Q Consensus 147 ~~~~~~~~~~~~-n~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~G 223 (541)
.+.+++...+.. ...+|....+..++++++.+++.+.+|.+ +++ + ++|+||++|+..+++++.+ +|
T Consensus 74 ~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~----v--~~t~G~~~al~~~~~~l~~-----~g 142 (447)
T 3b46_A 74 FAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAEN----V--TVTTGANEGILSCLMGLLN-----AG 142 (447)
T ss_dssp HHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGG----E--EEESHHHHHHHHHHHHHCC-----TT
T ss_pred HHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----E--EEeCCHHHHHHHHHHHHcC-----CC
Confidence 344444444432 12344444566788888888888877764 333 6 9999999999999998853 56
Q ss_pred CCCCeEEecCCccchHHHHHhhcCCeEEEeeCCC------------CCccCHHHHHHhhccCceEEEeecCCCCCcccc-
Q 009181 224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK------------EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID- 290 (541)
Q Consensus 224 i~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~------------~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id- 290 (541)
++|+++.+.|+++...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.
T Consensus 143 ---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 219 (447)
T 3b46_A 143 ---DEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFT 219 (447)
T ss_dssp ---CEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTCCCCC
T ss_pred ---CEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCCCCCcccC
Confidence 8999999999999999999999999999864 468999999999998999999999999999985
Q ss_pred --CHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCC-Cc--CCCCceEEEeCCCCCCCCCCC--ceEEEEeccc
Q 009181 291 --PIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DF--SVQGVTSISVDVHKYGLAPKG--TSVVLYRNRE 363 (541)
Q Consensus 291 --~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~-~~--~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~ 363 (541)
++++|+++|++||+++++|++|+++... |. .+++ .+ ...+.+++..++||+ +++.| +|+++.++++
T Consensus 220 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~-----g~-~~~~~~~~~~~~~~~i~i~S~sK~-~~~~G~riG~~~~~~~~ 292 (447)
T 3b46_A 220 REELTTLGNICVKHNVVIISDEVYEHLYFT-----DS-FTRIATLSPEIGQLTLTVGSAGKS-FAATGWRIGWVLSLNAE 292 (447)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCBCS-----SC-CCCGGGSCHHHHTTEEEEEEHHHH-TTCTTSCCEEEECSCHH
T ss_pred HHHHHHHHHHHHHcCcEEEEeccchhcccC-----CC-CcCHHHcCCCCCCcEEEEecCchh-cCCcchhhEEEEeCCHH
Confidence 5899999999999999999999876541 10 1111 11 124678999999999 55455 8987763554
Q ss_pred ccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCee
Q 009181 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMT 442 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~ 442 (541)
+............ .+.+....+++.++++... .+.+++..++..++++++.+.|+++ ++++..+....
T Consensus 293 l~~~l~~~~~~~~----------~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~ 361 (447)
T 3b46_A 293 LLSYAAKAHTRIC----------FASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTY 361 (447)
T ss_dssp HHHHHHHHHHHHT----------SSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSS
T ss_pred HHHHHHHHHhhcc----------CCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeE
Confidence 4432211000000 0111111223333443322 3457788889999999999999987 78877555566
Q ss_pred EEEEecCC----------------CCHHHHHHHHH-hCCceeccC---C-------CCCeEEEEecCCCHHHHHHHHHHH
Q 009181 443 IVAFGSDV----------------VDIFEVNDIMS-SKGWHLNPL---Q-------RPNSIHICVTLQHVAVVDVFLRDL 495 (541)
Q Consensus 443 ~v~f~~~~----------------~~~~~l~~~l~-~~G~~~~~~---~-------~~~~iRi~~~~~~~e~id~~i~~L 495 (541)
++++.++. .+..++.+.|. ++|+.+... . .++++|+|++. +.+++++++++|
T Consensus 362 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~-~~e~l~~~~~~l 440 (447)
T 3b46_A 362 FVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-DDAYLENAVERL 440 (447)
T ss_dssp EEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS-CHHHHHHHHHHG
T ss_pred EEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC-CHHHHHHHHHHH
Confidence 67777653 24557888886 578765432 1 15789999985 568999999988
Q ss_pred HHH
Q 009181 496 RES 498 (541)
Q Consensus 496 ~~~ 498 (541)
+++
T Consensus 441 ~~~ 443 (447)
T 3b46_A 441 KLL 443 (447)
T ss_dssp GGG
T ss_pred HHH
Confidence 763
No 112
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.93 E-value=3.4e-24 Score=222.98 Aligned_cols=300 Identities=15% Similarity=0.140 Sum_probs=215.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH-H--H
Q 009181 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK-A--A 243 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k-a--~ 243 (541)
+...++++++++++++++|.++.. +++++||+|+.++++++.. +| ++|+++.+.|+++.. . +
T Consensus 65 ~~~~~l~~~~r~~la~~~g~~~~~-------i~~~sGt~a~~~a~~~~~~-----~g---d~Vl~~~~~~~~~~~~~~~~ 129 (405)
T 2vi8_A 65 EYVDIVEELARERAKQLFGAEHAN-------VQPHSGAQANMAVYFTVLE-----HG---DTVLGMNLSHGGHLTHGSPV 129 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHCC-----TT---CEEEEECGGGTCCTTTTCTT
T ss_pred hHHHHHHHHHHHHHHHHhCCCceE-------EEecCcHHHHHHHHHHhcC-----CC---CEEEEecccccchhcccchh
Confidence 556788888999999999998543 4444459999999998842 56 899999999988753 2 2
Q ss_pred hhcCC--eEEEeeCC-CCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 244 QYFNI--KLWRVPVD-KEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 244 ~~~G~--~v~~v~~~-~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
...|. +++.++++ +++.+|+++|++++++ +|++|+++. ++ .|...++++|.++|++||+++|+|++|+.+..+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~-~~-~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~ 207 (405)
T 2vi8_A 130 NFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAA-AA-YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA 207 (405)
T ss_dssp SHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECC-SS-CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT
T ss_pred hhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEeC-CC-CCccCCHHHHHHHHHHcCCEEEEEcccccccccc
Confidence 34444 78888876 5788999999999986 888877743 33 4677799999999999999999999998443321
Q ss_pred hhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHH
Q 009181 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~ 399 (541)
+. .... ..++|+++.++||++.+|.| |+++.+ +++..........|. .|+.....++++.+
T Consensus 208 ----~~--~~~~--~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~~~~l~~~~~~~~---------~~~~~~~~~aa~~~ 268 (405)
T 2vi8_A 208 ----GL--HPNP--VPYAHFVTTTTHKTLRGPRG-GMILCQ-EQFAKQIDKAIFPGI---------QGGPLMHVIAAKAV 268 (405)
T ss_dssp ----TS--SCCS--TTTCSEEEEESSSTTCCCSC-EEEEEC-HHHHHHHHHHHTTTT---------CSSCCHHHHHHHHH
T ss_pred ----Cc--CCCc--cccCCEEEEeccccCCCCCC-eEEEEc-HHHHHHHHhhhcccc---------cCCCCHHHHHHHHH
Confidence 11 1111 23578999999999666888 876665 444332111111111 11111223445566
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-CeeEEEEecCC--CCHHHHHHHHHhCCceeccC------
Q 009181 400 ALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-DMTIVAFGSDV--VDIFEVNDIMSSKGWHLNPL------ 470 (541)
Q Consensus 400 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~~~v~f~~~~--~~~~~l~~~l~~~G~~~~~~------ 470 (541)
+++.+...++++..++..++++++.+.|+++ ++++..++ ...++++.+.. .+..++.+.|.++|+.+...
T Consensus 269 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~ 347 (405)
T 2vi8_A 269 AFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDP 347 (405)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCcccc
Confidence 6665555688999999999999999999998 89988653 46777777653 36788999999999766531
Q ss_pred ---CCCCeEEEEecC-----CCHHHHHHHHHHHHHHHHHHH
Q 009181 471 ---QRPNSIHICVTL-----QHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 471 ---~~~~~iRi~~~~-----~~~e~id~~i~~L~~~~~~l~ 503 (541)
..++++|++++. .+.+++++++++|+++++++.
T Consensus 348 ~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 348 ESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 124689999985 345999999999999886543
No 113
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.93 E-value=2.3e-24 Score=222.84 Aligned_cols=289 Identities=14% Similarity=0.141 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeE
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v 250 (541)
....++++.+++++|.+ .. +++++||+++..+++++. ++| ++|+++.+.|+++..+++..|+++
T Consensus 84 ~~~~~l~~~la~~~g~~-~~-------i~~~sGt~a~~~~~~~~~-----~~g---d~v~~~~~~~~~~~~~~~~~g~~~ 147 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS-RA-------LLFISGFAANQAVIAAMM-----AKE---DRIAADRLSHASLLEAASLSPSQL 147 (384)
T ss_dssp HHHHHHHHHHHHHHTCS-EE-------EEESCHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHTSSSEE
T ss_pred HHHHHHHHHHHHHhCCC-cE-------EEeCCcHHHHHHHHHHhC-----CCC---cEEEEcccccHHHHHHHHHcCCCE
Confidence 34456777888889986 32 555666999999998864 256 899999999999999999999999
Q ss_pred EEeeCCCCCccCHHHHHHhhccC---ceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCC
Q 009181 251 WRVPVDKEFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI 327 (541)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~i~~~---t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~ 327 (541)
+.+|. .|+++|+++++++ +++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.+. ..|...
T Consensus 148 ~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~---~~~~~~ 219 (384)
T 1bs0_A 148 RRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIG---EQGRGS 219 (384)
T ss_dssp EEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSS---GGGCCH
T ss_pred EEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceec---CCCCch
Confidence 99985 4899999999764 889999999999999999999999999999999999999755421 011100
Q ss_pred CCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHH
Q 009181 328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (541)
Q Consensus 328 p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~ 407 (541)
+ +....+.|+++.++||+ ++|.| |+++.+ +++..........|..+ ++.+....+++.++++.+...
T Consensus 220 ~--~~~~~~~di~~~s~sK~-~~~~G-G~~~~~-~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~al~~~~~~ 286 (384)
T 1bs0_A 220 C--WLQKVKPELLVVTFGKG-FGVSG-AAVLCS-STVADYLLQFARHLIYS--------TSMPPAQAQALRASLAVIRSD 286 (384)
T ss_dssp H--HHTTCCCSEEEEESSST-TSSCC-EEEEEC-HHHHHHHHHHCHHHHSS--------BCCCHHHHHHHHHHHHHHHSH
T ss_pred H--HhcCCCCcEEEeeccch-hhccC-cEEEeC-HHHHHHHHHhchhhhcC--------CCCCHHHHHHHHHHHHHHhcc
Confidence 0 11113568999999999 56777 876664 44433221111112111 011111233444555544322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC-CCHHHHHHHHHhCCceeccCCC------CCeEEEEe
Q 009181 408 GYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV-VDIFEVNDIMSSKGWHLNPLQR------PNSIHICV 480 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~~~G~~~~~~~~------~~~iRi~~ 480 (541)
+.++..++..++++++.+.|+++ ++++. ++..+++++.+++ .+..++.+.|.++|+.+..... .+++|+++
T Consensus 287 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~ 364 (384)
T 1bs0_A 287 EGDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTL 364 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBC
T ss_pred ccHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEE
Confidence 56788899999999999999988 78876 3455666666643 2567899999999987654321 26899999
Q ss_pred cCCC-HHHHHHHHHHHHHH
Q 009181 481 TLQH-VAVVDVFLRDLRES 498 (541)
Q Consensus 481 ~~~~-~e~id~~i~~L~~~ 498 (541)
+..+ .+++++++++|+++
T Consensus 365 ~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 365 TAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhh
Confidence 8764 49999999999875
No 114
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.92 E-value=2.8e-24 Score=222.98 Aligned_cols=295 Identities=16% Similarity=0.066 Sum_probs=208.9
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.+ . + ++|+|||+|+..+++++.- ++| ++|+++.++|+++..+++..|++++.++
T Consensus 60 ~l~~~la~~~~~~--~----~--i~~~~gt~al~~~l~~~~~----~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~~~ 124 (391)
T 3dr4_A 60 EFEKAFADYCGVK--H----A--IACNNGTTALHLALVAMGI----GPG---DEVIVPSLTYIASANSVTYCGATPVLVD 124 (391)
T ss_dssp HHHHHHHHHHTCS--E----E--EEESSHHHHHHHHHHHHTC----CTT---CEEEEESSSCTHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCCC--c----E--EEeCCHHHHHHHHHHHcCC----CCc---CEEEECCCchHHHHHHHHHCCCEEEEEe
Confidence 4555888888876 2 3 8999999999999998721 255 8999999999999999999999999999
Q ss_pred CC-CCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcC
Q 009181 255 VD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS 333 (541)
Q Consensus 255 ~~-~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~ 333 (541)
++ +++.+|+++|++++++++++|+ ++||+|.+.|+++|.++|++||+++|+|++|+.+..+.....+ .
T Consensus 125 ~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--------~ 193 (391)
T 3dr4_A 125 NDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSG--------S 193 (391)
T ss_dssp BCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--------S
T ss_pred cCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeec--------c
Confidence 98 5789999999999999998887 4568999999999999999999999999999754432100001 1
Q ss_pred CCCceEEEeCCCCCCCCCCCceEEEEeccccccccccccc-ccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHH
Q 009181 334 VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLEN 412 (541)
Q Consensus 334 ~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~ 412 (541)
...+++++++.||++ ++...|+++.+++++......... .+...........|...... .+.+++.....+++++.
T Consensus 194 ~~di~~~S~s~~K~l-~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~--~l~aa~~~~~~~~~~~~ 270 (391)
T 3dr4_A 194 LGDCATFSFFGNAII-TTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMT--NIQAAIGLAQLERVDEH 270 (391)
T ss_dssp SSSEEEEECBTTSSS-CCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCC--HHHHHHHHHHHHTHHHH
T ss_pred cCCEEEEECCCCCcC-CcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCC--HHHHHHHHHHHHHHHHH
Confidence 124778888899996 444466666665544322111100 00000000111122222222 44445544556778889
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEecC--C-----CeeEEEEecCC---CCHHHHHHHHHhCCceeccCC-----------
Q 009181 413 TKAIMEVSESIQKGIKEIPELFIIGR--P-----DMTIVAFGSDV---VDIFEVNDIMSSKGWHLNPLQ----------- 471 (541)
Q Consensus 413 ~~~~~~~a~~l~~~L~~~~~~~v~~~--~-----~~~~v~f~~~~---~~~~~l~~~l~~~G~~~~~~~----------- 471 (541)
.++..++++++.+.|+++ ++++..+ + ...++.+..++ .+..++.+.|.++|+.+....
T Consensus 271 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~ 349 (391)
T 3dr4_A 271 LAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAH 349 (391)
T ss_dssp HHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGG
T ss_pred HHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhh
Confidence 999999999999999998 8887755 2 22345666543 468899999999997654321
Q ss_pred -----C-------CCeEEEEecCCCH-HHHHHHHHHHHHHH
Q 009181 472 -----R-------PNSIHICVTLQHV-AVVDVFLRDLRESV 499 (541)
Q Consensus 472 -----~-------~~~iRi~~~~~~~-e~id~~i~~L~~~~ 499 (541)
. ...+|++++..++ +|++++++.|++++
T Consensus 350 ~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 350 LATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp GCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred cCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0 1468998877666 99999999998753
No 115
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.92 E-value=3.8e-23 Score=209.57 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=205.4
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.++++ + ++|+|+++++.+++.++ +| ++|+++.++|+++...++..|++++.+|
T Consensus 55 ~lr~~la~~~~~~~~~----i--~~t~G~~~~l~~~~~~~-------~g---d~vl~~~p~~~~~~~~~~~~g~~~~~v~ 118 (337)
T 3p1t_A 55 RVMRKLAEHFSCPEDN----L--MLVRGIDECFDRISAEF-------SS---MRFVTAWPGFDGYRARIAVSGLRHFEIG 118 (337)
T ss_dssp HHHHHHHHHHTSCGGG----E--EEESHHHHHHHHHHHHS-------TT---SEEEEESSSCSHHHHHHTTSCCEEEEEC
T ss_pred HHHHHHHHHhCcCHHH----E--EEeCCHHHHHHHHHHhc-------CC---CeEEEeCCCcHHHHHHHHHcCCEEEEec
Confidence 4566888889988765 6 99999999999998876 34 8999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCC
Q 009181 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV 334 (541)
Q Consensus 255 ~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~ 334 (541)
+++++.+|+++|+++ .+++++++++|+||+|.+.|++++.++|+++++ +++|++|+.+... + ......
T Consensus 119 ~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~-----~----~~~~~~ 186 (337)
T 3p1t_A 119 LTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSF-----R----ARGLAY 186 (337)
T ss_dssp BCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSC-----S----SSCCCC
T ss_pred CCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccc-----c----cccccc
Confidence 998899999999987 468999999999999999999999999999997 6669999865321 1 111223
Q ss_pred CCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-HHHHHHH
Q 009181 335 QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLEN 412 (541)
Q Consensus 335 ~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg-~~g~~~~ 412 (541)
.+.+++..+++|++. .+.++|+++. ++++..........| .....++.++...+. .+.+.+.
T Consensus 187 ~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~---------------~~~~~~~~a~~~~l~~~~~~~~~ 250 (337)
T 3p1t_A 187 GENELVFRSFSKSYGLAGLRLGALFG-PSELIAAMKRKQWFC---------------NVGTLDLHALEAALDNDRAREAH 250 (337)
T ss_dssp BTTEEEEEESSSTTCCTTTCCEEEEC-CHHHHHHHHTTSCTT---------------CSCHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCEEEEeeCchhccCcchheEEEEe-CHHHHHHHHhhcCCC---------------CCCHHHHHHHHHHhCCHHHHHHH
Confidence 456788889999942 4455787655 343332211110000 011223444443443 3457788
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceecc---CCCCCeEEEEecCCCHHHHH
Q 009181 413 TKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP---LQRPNSIHICVTLQHVAVVD 489 (541)
Q Consensus 413 ~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~---~~~~~~iRi~~~~~~~e~id 489 (541)
.++..++++++.+.|+++ ++++. ++..+++++... +..++.+.|.++|+.+.. ++.++++|+|++ +.++++
T Consensus 251 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~ 324 (337)
T 3p1t_A 251 IAKTLAQRRRVADALRGL-GYRVA-SSEANFVLVENA--AGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDND 324 (337)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCBC-CCSSSEEEEECT--TTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-cCEEC-CCCCeEEEEEcC--CHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHH
Confidence 888888999999999988 77765 456677777764 346788889999976643 344689999987 468999
Q ss_pred HHHHHHHHHH
Q 009181 490 VFLRDLRESV 499 (541)
Q Consensus 490 ~~i~~L~~~~ 499 (541)
++++.|+++.
T Consensus 325 ~l~~al~~~~ 334 (337)
T 3p1t_A 325 RLLAALAEYS 334 (337)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 116
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.92 E-value=5.4e-24 Score=220.93 Aligned_cols=317 Identities=13% Similarity=0.128 Sum_probs=222.6
Q ss_pred HHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCC---CC-CCCCccceEEcCcHHHHHHHHHHHHHHHHHhhc
Q 009181 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK---EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR 222 (541)
Q Consensus 147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~---~~-~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~ 222 (541)
.+.+++..... ...+|....+..++++++.+++.+.+|.+ ++ + + ++|+|+++++.++++++.+ +
T Consensus 47 ~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~----i--~~t~g~~~al~~~~~~~~~-----~ 114 (396)
T 3jtx_A 47 VITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNE----I--LPVLGSREALFSFVQTVLN-----P 114 (396)
T ss_dssp HHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTS----E--EEESSHHHHHHHHHHHHCC-----C
T ss_pred HHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCe----E--EEcCCcHHHHHHHHHHHhC-----C
Confidence 34444444432 22334334456788888999999998864 55 4 6 8999999999999998853 3
Q ss_pred CC--CCCeEEecCCccchHHHHHhhcCCeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHH---HHH
Q 009181 223 GI--TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQ---ELG 296 (541)
Q Consensus 223 Gi--~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~---~I~ 296 (541)
|- .+++|+++.++|+++..+++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+.|.+ +|+
T Consensus 115 g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~ 194 (396)
T 3jtx_A 115 VSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVF 194 (396)
T ss_dssp ---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHH
Confidence 20 125899999999999999999999999999965 567899999999999999999999999999998755 599
Q ss_pred HHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc--------CCCCceEEEeCCCCC-CCCCCCceEEEEeccccccc
Q 009181 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF--------SVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKH 367 (541)
Q Consensus 297 ~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~--------~~~gvdsis~~~hK~-~~~p~g~g~ll~~~~~~~~~ 367 (541)
++|++||+++++|++|+.+... +. ++... ...+.+++..+++|. +.++.++|+++. ++++...
T Consensus 195 ~~~~~~~~~li~De~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~ 266 (396)
T 3jtx_A 195 DLQDKYGFIIASDECYSEIYFD-----GN--KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAG-DAELLKN 266 (396)
T ss_dssp HHHHHHCCEEEEECTTTTCCST-----TC--CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEE-CHHHHHH
T ss_pred HHHHHcCCEEEEEccccccccC-----CC--CCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEe-CHHHHHH
Confidence 9999999999999999876531 10 01111 024667888899995 445566897654 4444332
Q ss_pred ccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEE
Q 009181 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAF 446 (541)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f 446 (541)
.......+.. + ....++.++...+. .+.+.+..+++.++++++.+.|++. +.+..+....++++
T Consensus 267 ~~~~~~~~~~----------~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~ 331 (396)
T 3jtx_A 267 FLLYRTYHGS----------A---MSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWL 331 (396)
T ss_dssp HHHHHHHHTC----------C---CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEE
T ss_pred HHHHHhhccc----------C---CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEE
Confidence 1111000000 0 01223444433332 4567888888999999999999875 33343444567777
Q ss_pred ecCCCCHHHHHHHHH-hCCceecc---C--------CCCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 447 GSDVVDIFEVNDIMS-SKGWHLNP---L--------QRPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 447 ~~~~~~~~~l~~~l~-~~G~~~~~---~--------~~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
.++..+..++.+.|. ++|+.+.. + ..++++|++++. +.+++++++++|++++
T Consensus 332 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 332 KVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAEDIVSLY 395 (396)
T ss_dssp ECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred ECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 776667788888885 56876532 1 124799999986 6699999999998764
No 117
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.92 E-value=3.9e-24 Score=220.41 Aligned_cols=313 Identities=13% Similarity=0.039 Sum_probs=221.2
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCC--CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhc-
Q 009181 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR- 222 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~--~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~- 222 (541)
..+.+++.... ....+|....+..++++++.+++.+.+|. ++++ + ++|+|+|+++.++++++.+ +
T Consensus 39 ~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~----i--~~t~g~~~al~~~~~~~~~-----~~ 106 (376)
T 3ezs_A 39 KFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENE----L--ISTLGSREVLFNFPSFVLF-----DY 106 (376)
T ss_dssp HHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGG----E--EEESSSHHHHHHHHHHHTT-----TC
T ss_pred HHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH----E--EECcCcHHHHHHHHHHHcC-----CC
Confidence 34555555544 22234444455678888899999999998 4444 6 9999999999999998853 5
Q ss_pred -CCCCCeEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHH
Q 009181 223 -GITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGEL 298 (541)
Q Consensus 223 -Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~l 298 (541)
| ++|+++.++|+++...++..|++++.+|++++..+++ ++++++.+++++|++++|+||+|.+.| +++|+++
T Consensus 107 ~g---d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~ 182 (376)
T 3ezs_A 107 QN---PTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKL 182 (376)
T ss_dssp SS---CEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred CC---CEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHHH
Confidence 6 8999999999999999999999999999987544555 777888888999999999999999977 6678888
Q ss_pred HHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc------CCCCceEEEeCCCCCC-CCCCCceEEEEeccccccccccc
Q 009181 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF------SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVA 371 (541)
Q Consensus 299 a~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~------~~~gvdsis~~~hK~~-~~p~g~g~ll~~~~~~~~~~~~~ 371 (541)
|++||+++|+|++|+++... . ...+.... ...+.+++..+++|.+ .++.++|+++. ++++.......
T Consensus 183 ~~~~~~~li~De~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~ 256 (376)
T 3ezs_A 183 ALKHDFILINDECYSEIYEN---T--PPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG-DSRLLEKYKAF 256 (376)
T ss_dssp HHHHTCEEEEECTTTTCBSS---S--CCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHH
T ss_pred HHHcCcEEEEEccchhhccC---C--CCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee-CHHHHHHHHHH
Confidence 99999999999999876541 1 00110110 0356788889999995 24455887665 44443321111
Q ss_pred ccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC
Q 009181 372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV 450 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~ 450 (541)
...+ .......++.++...+. .+.+++..++..++++++.+.|+ ++. .+....++++..+
T Consensus 257 ~~~~-------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~- 317 (376)
T 3ezs_A 257 RAYL-------------GYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ- 317 (376)
T ss_dssp HTTT-------------CCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS-
T ss_pred Hhhh-------------cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC-
Confidence 0000 00111223444443332 34578888888899999999987 444 3344566677765
Q ss_pred CCHHHHHHHHHh-CCceecc---C----CCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 451 VDIFEVNDIMSS-KGWHLNP---L----QRPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 451 ~~~~~l~~~l~~-~G~~~~~---~----~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
+..++.+.|.+ +|+.+.. + ..++++|++++. +.+++++++++|++++++
T Consensus 318 -~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 318 -NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp -CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 67889999987 8977643 1 235799999985 669999999999998753
No 118
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.92 E-value=1.3e-23 Score=218.83 Aligned_cols=297 Identities=15% Similarity=0.058 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v 253 (541)
.++++.+++++|.+ + + +++++||+|+..++++++ .++| ++|+++.++|+++..+++..|++++.+
T Consensus 66 ~~l~~~la~~~~~~--~----~--v~~~~Gt~a~~~~l~~~~----~~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~~ 130 (399)
T 2oga_A 66 EGFEAEFAAYCETD--H----A--VGVNSGMDALQLALRGLG----IGPG---DEVIVPSHTYIASWLAVSATGATPVPV 130 (399)
T ss_dssp HHHHHHHHHHTTSS--E----E--EEESCHHHHHHHHHHHTT----CCTT---CEEEEESSSCTHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCC--e----E--EEecCHHHHHHHHHHHhC----CCCc---CEEEECCCccHHHHHHHHHCCCEEEEE
Confidence 34556888888876 2 3 788889999999998872 1255 899999999999999999999999999
Q ss_pred eCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc
Q 009181 254 PVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (541)
Q Consensus 254 ~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~ 332 (541)
|+++ ++.+|+++|++++++++++|+ ++||+|.+.|+++|.++|+++|+++|+|++|+.+... . +. .+.
T Consensus 131 ~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~--~--~~---~~~- 199 (399)
T 2oga_A 131 EPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY--R--GR---RIG- 199 (399)
T ss_dssp CBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE--T--TE---ETT-
T ss_pred ecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc--C--Ce---ecc-
Confidence 9986 688999999999998888877 4678999999999999999999999999999755321 1 10 110
Q ss_pred CCCCceEEEeCC--CCCCCCCC-CceEEEEeccccccccccc-ccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHH
Q 009181 333 SVQGVTSISVDV--HKYGLAPK-GTSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (541)
Q Consensus 333 ~~~gvdsis~~~--hK~~~~p~-g~g~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g 408 (541)
.-.|++++++ +|+ +++. .+|+++.+++++....... ...+.. .+. ....|........+++++...+ +.
T Consensus 200 --~~~di~~~S~~~sK~-~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~-~~~-~~~~g~~~~~~~~~~a~~~~~l--~~ 272 (399)
T 2oga_A 200 --AGSSVAAFSFYPGKN-LGCFGDGGAVVTGDPELAERLRMLRNYGSRQ-KYS-HETKGTNSRLDEMQAAVLRIRL--AH 272 (399)
T ss_dssp --CTTCEEEEECCTTSS-SCCSSCCEEEEESCHHHHHHHHHHHBTTCSS-TTC-CCSCCCBCCCCHHHHHHHHHHH--HT
T ss_pred --cccCEEEEeCCCCcc-CCcCCceEEEEeCCHHHHHHHHHHHhcCccc-ccc-ccccccCCCcCHHHHHHHHHHH--HH
Confidence 0137778887 498 4554 4676666655543321110 011100 000 0111111111122444444322 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC-eeE--EEEecCCCCHHHHHHHHHhCCceeccCC-C------------
Q 009181 409 YLENTKAIMEVSESIQKGIKEIPELFIIGRPD-MTI--VAFGSDVVDIFEVNDIMSSKGWHLNPLQ-R------------ 472 (541)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-~~~--v~f~~~~~~~~~l~~~l~~~G~~~~~~~-~------------ 472 (541)
+++..++..++++++.+.|+++|++++...+. ... +.|.....+..++.+.|.++|+.+.... .
T Consensus 273 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~ 352 (399)
T 2oga_A 273 LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEA 352 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccC
Confidence 56677888889999999999988888754443 222 1233333467889999999998765321 0
Q ss_pred -------------CCeEEEEecCCCH-HHHHHHHHHHHHHHHHHH
Q 009181 473 -------------PNSIHICVTLQHV-AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 473 -------------~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~ 503 (541)
.+.+|++++..++ +|++++++.|++++++++
T Consensus 353 ~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 353 PPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp CCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1579999987665 999999999999987543
No 119
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.92 E-value=7.3e-24 Score=222.76 Aligned_cols=310 Identities=10% Similarity=0.061 Sum_probs=218.4
Q ss_pred CcccchHHHHHHHHHHHHHHHHh-CCCCCCCCCc---cceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccc
Q 009181 162 HLDIFQSVARFEAEVIAMTAALL-GNKEKASGGQ---VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~-g~~~~~~~~~---v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~ 237 (541)
+|....+..++++.+.+++.+.. +.+++ + + ++|+||++|+.++++++.+ +| ++|+++.+.|+
T Consensus 83 ~y~~~~g~~~lr~~ia~~~~~~~~~~~~~----~~~~i--~~t~g~~~al~~~~~~l~~-----~g---d~Vl~~~p~y~ 148 (430)
T 2x5f_A 83 PYAPPQGIEELRDLWQQKMLRDNPELSID----NMSRP--IVTNALTHGLSLVGDLFVN-----QD---DTILLPEHNWG 148 (430)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHCTTCCGG----GBCCC--EEESHHHHHHHHHHHHHCC-----TT---CEEEEESSCCT
T ss_pred ccCCCCCCHHHHHHHHHHHhccCcccCCC----ccceE--EEcCCchHHHHHHHHHHhC-----CC---CEEEEcCCcCc
Confidence 33333455667776666665542 44432 3 5 8999999999999998853 56 89999999999
Q ss_pred hHHHHHhh-cCCeEEEeeCCC-CCccCHHHHHHhhcc---CceEEEeecCCCCCccccC---HHHHHHHHHH-----cCC
Q 009181 238 AYDKAAQY-FNIKLWRVPVDK-EFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP---IQELGELALS-----HGT 304 (541)
Q Consensus 238 s~~ka~~~-~G~~v~~v~~~~-~~~~d~~~Le~~i~~---~t~~vv~~~~~~~~G~id~---i~~I~~la~~-----~~i 304 (541)
++...++. .|++++.+|+++ ++.+|+++|++++++ +++++++++|+||+|.+.| +++|.++|++ ||+
T Consensus 149 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~ 228 (430)
T 2x5f_A 149 NYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKV 228 (430)
T ss_dssp HHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred cHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCE
Confidence 99999999 999999999876 578999999999987 8899999999999999988 8899999999 999
Q ss_pred EEEEeCCcccchhhhhhhcCCCCCCC--CcC-CCCc---eEEEeCCCCCCCCCCC--ceEEEE--ecccccccccccccc
Q 009181 305 CLHVDLCLGGFVLPFAKKLGYPIPPF--DFS-VQGV---TSISVDVHKYGLAPKG--TSVVLY--RNREIRKHQFVAVTE 374 (541)
Q Consensus 305 ~lhvD~a~gg~~~~f~~~~g~~~p~~--~~~-~~gv---dsis~~~hK~~~~p~g--~g~ll~--~~~~~~~~~~~~~~~ 374 (541)
++++|++|+++... ..+ .+++ ++. ..+. +++..++||+ +++.| +|+++. +++++..........
T Consensus 229 ~li~De~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~l~~~~~~ 302 (430)
T 2x5f_A 229 IAVVDDAYYGLFYE---DVY--TQSLFTALTNLHSNAILPIRLDGATKE-FFAWGFRVGFMTFGTSDQTTKEVLEAKVKG 302 (430)
T ss_dssp EEEEECTTTTCBCS---SSC--CSCHHHHHHTTCCTTEEEEEEEEHHHH-TTCGGGCCEEEEEBCCCHHHHHHHHHHHHH
T ss_pred EEEEehhcccccCC---ccc--chHHHHHHhhccCCcceEEEEEecccC-CCCCCCCeEEEEEecCCHHHHHHHHHHHhh
Confidence 99999999876531 100 1111 221 1334 6778899999 45445 798777 244443321111100
Q ss_pred cCCCccCCCcccCCCCCchHHHHHHHHHHHh-H----HHHHHHHHHHHHHHHHHHHHhh----cCCCeEEecCCCeeEEE
Q 009181 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-Q----EGYLENTKAIMEVSESIQKGIK----EIPELFIIGRPDMTIVA 445 (541)
Q Consensus 375 ~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg-~----~g~~~~~~~~~~~a~~l~~~L~----~~~~~~v~~~~~~~~v~ 445 (541)
. ..+........+++++...+. . +.+++..+++.++++++.+.|+ +. ++++..+....+++
T Consensus 303 ~---------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~ 372 (430)
T 2x5f_A 303 L---------IRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMA 372 (430)
T ss_dssp H---------HHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEE
T ss_pred h---------hhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEE
Confidence 0 000000111334444444443 2 2234478888888999999998 55 78876544444577
Q ss_pred EecCCCCHHHHHHHHHh-CCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 446 FGSDVVDIFEVNDIMSS-KGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 446 f~~~~~~~~~l~~~l~~-~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
+..++.+..++.+.|.+ +|+.+... .++++|+|++..+.+++++++++|+++++++
T Consensus 373 ~~~~~~~~~~~~~~l~~~~gi~v~~g-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 373 IKVHDVDPEALRKHLIDKYSIGVIAL-NATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp EEESSSCHHHHHHHHHHHHCEECEEC-SSSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHhCCEEEecC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 77665578889999998 89877643 4578999999545589999999999998765
No 120
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.92 E-value=4.7e-24 Score=223.39 Aligned_cols=306 Identities=15% Similarity=0.100 Sum_probs=219.7
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCC--C-CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~--~-~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s 238 (541)
+|....+..++++++.+++.+.+|.+ + ++ + ++|+||++|+..+++++.+ +| ++|+++.+.|++
T Consensus 62 ~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~----i--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~p~~~~ 127 (422)
T 3fvs_A 62 QYTKTFGYPPLTKILASFFGELLGQEIDPLRN----V--LVTVGGYGALFTAFQALVD-----EG---DEVIIIEPFFDC 127 (422)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHH----E--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCc----E--EEECChHHHHHHHHHHHcC-----CC---CEEEEcCCCchh
Confidence 34434456788888999999888865 3 33 6 8999999999999998742 56 899999999999
Q ss_pred HHHHHhhcCCeEEEeeCCC------------CCccCHHHHHHhhccCceEEEeecCCCCCcccc---CHHHHHHHHHHcC
Q 009181 239 YDKAAQYFNIKLWRVPVDK------------EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHG 303 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~------------~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id---~i~~I~~la~~~~ 303 (541)
+...++..|++++.+|+++ ++.+|+++|++++++++++|++++|+||+|.+. ++++|+++|++||
T Consensus 128 ~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~ 207 (422)
T 3fvs_A 128 YEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHD 207 (422)
T ss_dssp HHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999875 457999999999999999999999999999998 4899999999999
Q ss_pred CEEEEeCCcccchhhhhhhcCCCCCCCCcC-CCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccC
Q 009181 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (541)
Q Consensus 304 i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~-~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 381 (541)
+++|+|++|+++... .... .+-..+. ..+.+++..+++|.+. .+.++|+++.++ ++.......... .
T Consensus 208 ~~li~De~~~~~~~~---~~~~-~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~~~---~--- 276 (422)
T 3fvs_A 208 VVCITDEVYQWMVYD---GHQH-ISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD-HIMKHLRTVHQN---S--- 276 (422)
T ss_dssp CEEEEECTTTTCBCT---TCCC-CCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH-HHHHHHHHHHHT---T---
T ss_pred cEEEEEccchhhccC---CCCC-CChhhcccccCcEEEEecchhccCCccceEEEEEeCH-HHHHHHHHHHhh---c---
Confidence 999999999876541 1000 0101111 2355788888999942 334588766544 332221110000 0
Q ss_pred CCcccCCCCCchHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCC-
Q 009181 382 SPTVAGSRPGGLIAGAWAALMSLG---------QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV- 451 (541)
Q Consensus 382 ~~~~~gsr~~~~~a~~~~al~~lg---------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~- 451 (541)
..+....+++++...+. .+.+++..++..++++++.+.|+++ ++++..+....++++.....
T Consensus 277 -------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 348 (422)
T 3fvs_A 277 -------VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFK 348 (422)
T ss_dssp -------TCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHH
T ss_pred -------cCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhc
Confidence 00011224444444342 3567888899999999999999998 89887666666666664321
Q ss_pred ---C----------HHHHHHHHH-hCCceecc---C-------CCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 452 ---D----------IFEVNDIMS-SKGWHLNP---L-------QRPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 452 ---~----------~~~l~~~l~-~~G~~~~~---~-------~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
+ ..++...+. ++|+.+.. + ...+++|+|++. +.+++++++++|++++++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 349 RKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhh
Confidence 1 456777654 56876543 2 125799999987 669999999999998764
No 121
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.92 E-value=2.7e-24 Score=224.52 Aligned_cols=291 Identities=15% Similarity=0.114 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCe
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK 249 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~ 249 (541)
.+...++++++++++|.+.. +++++|++++..+++++.+ +| ++|+++.+.|+++..+++..|++
T Consensus 103 ~~~~~~l~~~la~~~g~~~~--------i~~~sGt~a~~~~l~~~~~-----~g---d~Vl~~~~~~~~~~~~~~~~g~~ 166 (409)
T 3kki_A 103 DYDKPMIEKRLAKFTGFDEC--------LLSQSGWNANVGLLQTICQ-----PN---TNVYIDFFAHMSLWEGARYANAQ 166 (409)
T ss_dssp TTTSCHHHHHHHHHHTCSEE--------EEESCHHHHHHHHHHHHCC-----TT---CEEEEETTSCHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHHhCCCeE--------EEecchHHHHHHHHHHhcC-----CC---CEEEECCCcCHHHHHHHHHcCCe
Confidence 34445677799999988642 5566678999999988753 66 89999999999999999999999
Q ss_pred EEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCC-
Q 009181 250 LWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI- 327 (541)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~- 327 (541)
++.++. .|+++|++++++ ++++|++++++||+|.+.|+++|.++|++||++|++|++|+++.+. ..|...
T Consensus 167 ~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g---~~g~~~~ 238 (409)
T 3kki_A 167 AHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHG---PNGAGLL 238 (409)
T ss_dssp EEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSS---GGGCCHH
T ss_pred EEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccC---CCCCcch
Confidence 988876 489999999986 5899999999999999999999999999999999999999875431 111100
Q ss_pred CCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHH
Q 009181 328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (541)
Q Consensus 328 p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~ 407 (541)
..++. ..++|+++.+++|++ ++. .|+++. ++++..........+..+ ++.....+++..++++.+..
T Consensus 239 ~~~~~-~~~~di~~~s~sK~~-~~~-gg~v~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~aa~~aal~~~~~- 305 (409)
T 3kki_A 239 AELGL-TREVHFMTASLAKTF-AYR-AGAIWC-NNEVNRCVPFISYPAIFS--------STLLPYEAAGLETTLEIIES- 305 (409)
T ss_dssp HHHTC-GGGCSEEEEESSSTT-CSS-CEEEEE-SSSGGGTHHHHCHHHHHS--------BCCCHHHHHHHHHHHHHHHH-
T ss_pred hhcCC-CCCCCEEEeecchhh-CCC-ceEEEE-CHHHHHHHHHhCcCcccc--------CCCcHHHHHHHHHHHHHHhc-
Confidence 00111 235789999999995 444 465444 454443221111111100 11111123345555554422
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCC-CHHHHHHHHHhCCceeccCC------CCCeEEEEe
Q 009181 408 GYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV-DIFEVNDIMSSKGWHLNPLQ------RPNSIHICV 480 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~-~~~~l~~~l~~~G~~~~~~~------~~~~iRi~~ 480 (541)
.++..++..++++++.+.|+++ ++++. +...++++...+. +..++.+.|.++|+.+.... .++.+|+++
T Consensus 306 -~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~ 381 (409)
T 3kki_A 306 -ADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSL 381 (409)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEEC
T ss_pred -CHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEc
Confidence 2677888899999999999987 77665 3556677766542 46678999999998764322 236899999
Q ss_pred cCCCH-HHHHHHHHHHHHHHHH
Q 009181 481 TLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 481 ~~~~~-e~id~~i~~L~~~~~~ 501 (541)
+..++ +++++++++|+++++.
T Consensus 382 ~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 382 NSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhc
Confidence 86655 9999999999999865
No 122
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.92 E-value=3e-23 Score=217.03 Aligned_cols=285 Identities=12% Similarity=0.133 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH----HhhcCC
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFNI 248 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka----~~~~G~ 248 (541)
..++++++++++|.+ + + ++|+|||+|+..+++++. ++| ++|+++.+.|+++... ++..|+
T Consensus 58 ~~~l~~~la~~~g~~--~----~--~~~~~gt~a~~~al~~l~-----~~g---d~vi~~~~~~~~~~~~~~~~~~~~g~ 121 (412)
T 2cb1_A 58 AKALEERLKALEGAL--E----A--VVLASGQAATFAALLALL-----RPG---DEVVAAKGLFGQTIGLFGQVLSLMGV 121 (412)
T ss_dssp HHHHHHHHHHHHTCS--E----E--EEESSHHHHHHHHHHTTC-----CTT---CEEEEETTCCHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHhCCC--c----E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 445666899999875 2 4 899999999999999873 255 8999999999986665 455799
Q ss_pred eEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
+++.++.+ +++|+++++++|++|++++|+||+|.+.|+++|+++|++||+++|+|++|+.+...
T Consensus 122 ~~~~~~~~------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~---------- 185 (412)
T 2cb1_A 122 TVRYVDPE------PEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL---------- 185 (412)
T ss_dssp EEEEECSS------HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS----------
T ss_pred EEEEECCC------HHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc----------
Confidence 99999863 89999999999999999999999999999999999999999999999999765211
Q ss_pred CCCcCCCCceEEEeCCCCCCCCCCC-ceEEEEecccccccccc-ccccc-CCC---------cc------CCCcccCCCC
Q 009181 329 PFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIRKHQFV-AVTEW-SGG---------LY------VSPTVAGSRP 390 (541)
Q Consensus 329 ~~~~~~~gvdsis~~~hK~~~~p~g-~g~ll~~~~~~~~~~~~-~~~~~-~~~---------~~------~~~~~~gsr~ 390 (541)
.+....++|+++.++||++.+|.+ .|+++++++......+. ..+.. .++ .. ......|...
T Consensus 186 -~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~ 264 (412)
T 2cb1_A 186 -CRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMAL 264 (412)
T ss_dssp -CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCC
T ss_pred -CCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCC
Confidence 111234689999999999777766 77777776442100000 00000 000 00 0001112211
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEec-C----------------CCeeEEEEecCCCCH
Q 009181 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIG-R----------------PDMTIVAFGSDVVDI 453 (541)
Q Consensus 391 ~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~----------------~~~~~v~f~~~~~~~ 453 (541)
...++|+++. +.+.+.+..++..++++++.+.|.+.+++..+. + ...++++|.+ + +.
T Consensus 265 --~~~~a~~~~~--~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~ 338 (412)
T 2cb1_A 265 --SPFNAYLLFQ--GLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DL 338 (412)
T ss_dssp --CHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SH
T ss_pred --ChHHhHHHHc--CCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CH
Confidence 1234555543 334456777778889999999999999988552 2 1356899998 5 77
Q ss_pred HHHHHHHHhCCceeccC----------------------------CC-CCeEEEEecCCCH-HHHHHHHHHHHH
Q 009181 454 FEVNDIMSSKGWHLNPL----------------------------QR-PNSIHICVTLQHV-AVVDVFLRDLRE 497 (541)
Q Consensus 454 ~~l~~~l~~~G~~~~~~----------------------------~~-~~~iRi~~~~~~~-e~id~~i~~L~~ 497 (541)
.++...+.+.|+.. .. +. ++.+|+|++..++ ++++++++.|++
T Consensus 339 ~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 339 ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 77888888888654 21 11 4789999999998 888888888764
No 123
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.92 E-value=1.5e-22 Score=212.43 Aligned_cols=294 Identities=15% Similarity=0.136 Sum_probs=204.8
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.+ + + ++|+|||+|+..+++++. +| ++|+++.++|+++..+++..|++++.++
T Consensus 56 ~l~~~la~~~~~~--~----v--~~~~ggt~al~~~l~~l~------~g---d~Vlv~~~~~~~~~~~~~~~G~~~~~v~ 118 (424)
T 2po3_A 56 EFEERVAGLAGVR--H----A--VATCNATAGLQLLAHAAG------LT---GEVIMPSMTFAATPHALRWIGLTPVFAD 118 (424)
T ss_dssp HHHHHHHHHHTSS--E----E--EEESCHHHHHHHHHHHHT------CC---SEEEEESSSCTHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCCC--e----E--EEeCCHHHHHHHHHHHcC------CC---CEEEECCCccHHHHHHHHHcCCEEEEEe
Confidence 3555777888764 2 4 899999999999999873 45 8999999999999999999999999999
Q ss_pred CCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc-cchhhhhhhcCCCCCCCCc
Q 009181 255 VDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG-GFVLPFAKKLGYPIPPFDF 332 (541)
Q Consensus 255 ~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g-g~~~~f~~~~g~~~p~~~~ 332 (541)
+++ ++.+|+++|++++++++++|++++ |+|.+.++++|.++|++||+++|+|++|+ |+... +. ++..
T Consensus 119 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~-----~~---~~~~ 187 (424)
T 2po3_A 119 IDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVD-----GR---PAGS 187 (424)
T ss_dssp BCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET-----TE---ETTS
T ss_pred cCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeEC-----Ce---eccc
Confidence 986 788999999999998999888865 79999999999999999999999999998 44321 11 1110
Q ss_pred CCCCceEEEeCC--CCCCCCCCCceEEEEeccccccccccccc-ccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHH
Q 009181 333 SVQGVTSISVDV--HKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGY 409 (541)
Q Consensus 333 ~~~gvdsis~~~--hK~~~~p~g~g~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~ 409 (541)
. .|+++.++ +|+ ++|..+|+++.+++++......... .+.. .+ .....|........++++++. ..+++
T Consensus 188 -~--~di~~~S~sk~K~-l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~-~~-~~~~~g~~~~~~~~~aa~~l~--~~~~~ 259 (424)
T 2po3_A 188 -L--GDAEVFSFHATKA-VNAFEGGAVVTDDADLAARIRALHNFGFDL-PG-GSPAGGTNAKMSEAAAAMGLT--SLDAF 259 (424)
T ss_dssp -S--SSEEEEECCTTSS-SCCSSCEEEEESCHHHHHHHHHHHBTTTTC-TT-CCTTCCCBCCCCHHHHHHHHH--HHHHH
T ss_pred -c--cCEEEEeCCCCCC-ccCCCCeEEEeCCHHHHHHHHHHHhcCccc-cc-cccccCcCCCcCHHHHHHHHH--HHHHH
Confidence 1 24555554 597 5566678766654554332111111 1100 00 111112111111223444443 34567
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEecCCC-----eeEEEEecC----CCCHHHHHHHHHhCCceeccC-C--------
Q 009181 410 LENTKAIMEVSESIQKGIKEIPELFIIGRPD-----MTIVAFGSD----VVDIFEVNDIMSSKGWHLNPL-Q-------- 471 (541)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----~~~v~f~~~----~~~~~~l~~~l~~~G~~~~~~-~-------- 471 (541)
++..++..++++++.+.|+++|++++..++. ..++.+..+ +.+..++.+.|.++|+.+... .
T Consensus 260 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~ 339 (424)
T 2po3_A 260 PEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEP 339 (424)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchh
Confidence 8888999999999999999988999876332 245656655 347888999999999876541 1
Q ss_pred --------CCCe-------EEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 472 --------RPNS-------IHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 472 --------~~~~-------iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
.++. +|+++...++ +|++++++.|+++++...+
T Consensus 340 ~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 340 YRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp TTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 0122 6665445554 9999999999998876543
No 124
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.92 E-value=2.3e-23 Score=215.90 Aligned_cols=296 Identities=15% Similarity=0.081 Sum_probs=206.3
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++.+++++|.+ + + ++|+|||+|+..++++++ -++| ++|+++.++|+++..+++..|++++.+|
T Consensus 43 ~l~~~la~~~~~~--~----~--~~~~~gt~al~~~~~~~~----~~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~v~ 107 (393)
T 1mdo_A 43 ELEAAFCRLTGNQ--Y----A--VAVSSATAGMHIALMALG----IGEG---DEVITPSMTWVSTLNMIVLLGANPVMVD 107 (393)
T ss_dssp HHHHHHHHHHCCS--E----E--EEESCHHHHHHHHHHHTT----CCTT---CEEEEESSSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCCC--c----E--EEecChHHHHHHHHHHcC----CCCC---CEEEeCCCccHhHHHHHHHCCCEEEEEe
Confidence 4555888888875 2 4 899999999999999872 1255 8999999999999999999999999999
Q ss_pred CCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcC
Q 009181 255 VDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS 333 (541)
Q Consensus 255 ~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~ 333 (541)
+++ ++.+|+++|++++++++++|++++ |+|.+.|+++|.++|++||+++|+|++|+.+..+ . +. +
T Consensus 108 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~--~--~~---~---- 173 (393)
T 1mdo_A 108 VDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSY--K--GR---H---- 173 (393)
T ss_dssp BCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE--T--TE---E----
T ss_pred ccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECccccCCeE--C--Ce---e----
Confidence 986 478999999999998899888764 6999999999999999999999999999854321 0 10 1
Q ss_pred CCC-ceEEEeCCC--CCCCCCCCceEEEEeccccccccccccc-ccCCCc---cC---CCc----ccCCCCCchHHHHHH
Q 009181 334 VQG-VTSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGL---YV---SPT----VAGSRPGGLIAGAWA 399 (541)
Q Consensus 334 ~~g-vdsis~~~h--K~~~~p~g~g~ll~~~~~~~~~~~~~~~-~~~~~~---~~---~~~----~~gsr~~~~~a~~~~ 399 (541)
.+ .|+++.++| |++ ++..+|+++.+++++......... .+.... +. ... ..|.........+.+
T Consensus 174 -~~~~d~~~~S~~k~K~l-~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~ 251 (393)
T 1mdo_A 174 -IGARGTAIFSFHAIKNI-TCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAI 251 (393)
T ss_dssp -TTSSSEEEEECCTTSSS-CSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHH
T ss_pred -cCCCCeEEEeCCCCCcc-ccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHH
Confidence 12 788899988 995 444577766655554332111000 000000 00 000 011111111112222
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC------CeeEEEEecC----CCCHHHHHHHHHhCCceecc
Q 009181 400 ALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP------DMTIVAFGSD----VVDIFEVNDIMSSKGWHLNP 469 (541)
Q Consensus 400 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~------~~~~v~f~~~----~~~~~~l~~~l~~~G~~~~~ 469 (541)
++ ...+++++..++..++++++.+.|++++ +++...+ ...++++.++ +.+..++.+.|.++|+.+..
T Consensus 252 ~~--~~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~ 328 (393)
T 1mdo_A 252 AL--AQLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL 328 (393)
T ss_dssp HH--HHHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBC
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCccc
Confidence 22 2335677888888999999999999986 8876433 2346788776 45788999999999976654
Q ss_pred CCC-----------------C-------CeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 470 LQR-----------------P-------NSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 470 ~~~-----------------~-------~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
... + ..+|++++..++ +|++++++.|+++++....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~~ 388 (393)
T 1mdo_A 329 HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGSH 388 (393)
T ss_dssp CCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC----
T ss_pred ccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 211 1 269999886555 9999999999998866543
No 125
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.92 E-value=4.5e-23 Score=215.34 Aligned_cols=300 Identities=13% Similarity=0.104 Sum_probs=208.8
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH---H
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---A 242 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k---a 242 (541)
.+...++++.+++++++++|.++.+ + ++++| |+|+..+++++.+ +| ++|+++.++|+++.. .
T Consensus 66 ~~~~~~~~~~~~~~la~~~g~~~~~----i--~~~sG-t~a~~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~ 130 (417)
T 3n0l_A 66 CEFVDEIETLAIERCKKLFNCKFAN----V--QPNSG-SQANQGVYAALIN-----PG---DKILGMDLSHGGHLTHGAK 130 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEE----C--CCSSH-HHHHHHHHHHHSC-----TT---CEEEEECC-----------
T ss_pred chHHHHHHHHHHHHHHHHhCCCCcc----e--EeccH-HHHHHHHHHHhcC-----CC---CEEEecccccccccchhhh
Confidence 3566788888999999999997764 4 55665 8999999998843 66 899999999988654 3
Q ss_pred HhhcC--CeEEEeeCCCCCccCHHHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 243 AQYFN--IKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 243 ~~~~G--~~v~~v~~~~~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
....| +.++.+++++++.+|+++|+++++ ++|++|++++++| |.+.|+++|.++|++||+++|+|++++.....
T Consensus 131 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~- 207 (417)
T 3n0l_A 131 VSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVV- 207 (417)
T ss_dssp -----CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHH-
T ss_pred hhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhh-
Confidence 33433 456667777788899999999998 6899999888875 99999999999999999999999997544331
Q ss_pred hhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHH
Q 009181 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~ 399 (541)
. +. ......++|+++.++||++.+|. +|+++.+++++.......... ...++.....++++.+
T Consensus 208 -~--~~----~~~~~~~~di~~~s~sK~l~g~~-~G~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~aa~~~ 270 (417)
T 3n0l_A 208 -A--GE----HPSPFPYAHVVSSTTHKTLRGPR-GGIIMTNDEELAKKINSAIFP---------GIQGGPLMHVIAAKAV 270 (417)
T ss_dssp -T--TS----SCCCTTTCSEEEEESSTTTCSCS-CEEEEESCHHHHHHHHHHHTT---------TTCSSCCHHHHHHHHH
T ss_pred -c--cc----CCCccccceEEEeeCccccCCCC-eeEEEECCHHHHHHHhhhhCC---------cccCCcHHHHHHHHHH
Confidence 1 11 11112257999999999975665 487776655544322111111 1112222333556666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-CCeeEEEEecCC--CCHHHHHHHHHhCCceeccCC-----
Q 009181 400 ALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR-PDMTIVAFGSDV--VDIFEVNDIMSSKGWHLNPLQ----- 471 (541)
Q Consensus 400 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~f~~~~--~~~~~l~~~l~~~G~~~~~~~----- 471 (541)
++.....+++++..++..++++++.+.|++ .++++... ....++++...+ .+..++.+.|.++|+.+....
T Consensus 271 a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~ 349 (417)
T 3n0l_A 271 GFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEI 349 (417)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCC
Confidence 666555577899999999999999999998 58888753 335566666543 367889999999998765321
Q ss_pred ----CCCeEEEEecCC-----CHHHHHHHHHHHHHHHHH
Q 009181 472 ----RPNSIHICVTLQ-----HVAVVDVFLRDLRESVET 501 (541)
Q Consensus 472 ----~~~~iRi~~~~~-----~~e~id~~i~~L~~~~~~ 501 (541)
.++.+|++++.. +.++++++++.|++++++
T Consensus 350 ~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 350 RSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 125699987643 348999999999998864
No 126
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.92 E-value=4.9e-23 Score=220.86 Aligned_cols=313 Identities=11% Similarity=0.111 Sum_probs=217.6
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCcc
Q 009181 159 NPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH 236 (541)
Q Consensus 159 n~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h 236 (541)
....|...++..++++++.+++.+..|.+ +++ + ++|+|+++++.+++.++.. .+| ++|+++.+.|
T Consensus 126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~l~~----~~g---d~Vlv~~p~y 192 (500)
T 3tcm_A 126 ATGAYSHSQGIHGLRDAIASGIASRDGFPANADD----I--FLTDGASPGVHLMMQLLIR----NEK---DGILVPIPQY 192 (500)
T ss_dssp CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGG----E--EEESSSHHHHHHHHHHHCC----STT---EEEEEEESCC
T ss_pred cCCCcCCCcChHHHHHHHHHHHHhhcCCCCCccc----E--EEcCCHHHHHHHHHHHHcC----CCC---CEEEEeCCCc
Confidence 34566667788889999999998888854 443 6 9999999999999998741 155 8999999999
Q ss_pred chHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhcc------CceEEEeecCCCCCccccC---HHHHHHHHHHcCCE
Q 009181 237 SAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTC 305 (541)
Q Consensus 237 ~s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~------~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~ 305 (541)
+++..+++..|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.+.+ +++|+++|++||++
T Consensus 193 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~ 272 (500)
T 3tcm_A 193 PLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLV 272 (500)
T ss_dssp THHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 999999999999999999976 468999999999987 7899999999999999966 66788889999999
Q ss_pred EEEeCCcccchhhhhhhcCCCCCCC-------CcCCCCce-EEEeCCCCCCCCC--CCceEEEEe--ccccccccccccc
Q 009181 306 LHVDLCLGGFVLPFAKKLGYPIPPF-------DFSVQGVT-SISVDVHKYGLAP--KGTSVVLYR--NREIRKHQFVAVT 373 (541)
Q Consensus 306 lhvD~a~gg~~~~f~~~~g~~~p~~-------~~~~~gvd-sis~~~hK~~~~p--~g~g~ll~~--~~~~~~~~~~~~~ 373 (541)
+++|++|+.+.+. .... .+.+ +....++. ++..+++|.++++ ..+|+++.. ++++.........
T Consensus 273 li~Deay~~~~~~--~~~~--~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 348 (500)
T 3tcm_A 273 LLADEVYQENIYV--DNKK--FHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIAS 348 (500)
T ss_dssp EEEECTTTTCBCC--TTCC--CCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHH
T ss_pred EEEecCccccccC--CCCC--CCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHh
Confidence 9999999876541 0000 0111 00022333 4455889984344 447887774 4444432221111
Q ss_pred ccCCCccCCCcccCCCCCchHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCe
Q 009181 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG------------QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDM 441 (541)
Q Consensus 374 ~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~ 441 (541)
. .......++.++...+. .+...++.+++.++++++.+.|+++|++++.. |..
T Consensus 349 ~--------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~g 413 (500)
T 3tcm_A 349 V--------------NLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNE-AEG 413 (500)
T ss_dssp T--------------TCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCB
T ss_pred c--------------ccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEec-CCe
Confidence 0 00111223333333332 24456777888899999999999999998774 444
Q ss_pred eEEEE-ecCC------------CC-HHH-HHHHHHhCCceecc---CC---CCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 442 TIVAF-GSDV------------VD-IFE-VNDIMSSKGWHLNP---LQ---RPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 442 ~~v~f-~~~~------------~~-~~~-l~~~l~~~G~~~~~---~~---~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
+++.| +..- .. ... +.+.|.++|+.+.. ++ ..+.+|++++ .+.+++++++++|+++++
T Consensus 414 ~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 414 AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHHH
T ss_pred EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHH
Confidence 44443 2221 11 112 23566677976643 22 2357999999 455899999999999998
Q ss_pred HHHc
Q 009181 501 TVKQ 504 (541)
Q Consensus 501 ~l~~ 504 (541)
++++
T Consensus 493 ~~~~ 496 (500)
T 3tcm_A 493 AFMS 496 (500)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 127
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.92 E-value=6.8e-24 Score=220.74 Aligned_cols=300 Identities=14% Similarity=0.030 Sum_probs=207.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEE-cCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAA 243 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~-t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~ 243 (541)
++...++..++++++++++|+++.+ ++ ++ |+|||+|+.++++++.+ +| .++++...|.. +...+
T Consensus 73 ~~~~~~~~~~~~~~la~~~g~~~~~---~i--~~~t~g~t~al~~~~~~l~~-----~g----v~~v~~~~~~~~~~~~~ 138 (398)
T 2fyf_A 73 QAPVKNLVGRVRSGLAELFSLPDGY---EV--ILGNGGATAFWDAAAFGLID-----KR----SLHLTYGEFSAKFASAV 138 (398)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCTTC---EE--EEEETCHHHHHHHHHHHTCS-----SC----EEEEECSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCc---eE--EEeCCchhHHHHHHHHHhcC-----CC----eEEEeCCHHHHHHHHHH
Confidence 4556677788999999999998432 25 77 99999999999998742 22 24445555532 23345
Q ss_pred hhc--CCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhh
Q 009181 244 QYF--NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (541)
Q Consensus 244 ~~~--G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~ 321 (541)
... |++++.|+++++...+. .++++|++|++++++||+|.+.|+++|.++ +|+++|+|++|+.+..|
T Consensus 139 ~~~~~g~~~~~v~~~~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~--- 207 (398)
T 2fyf_A 139 SKNPFVGEPIIITSDPGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP--- 207 (398)
T ss_dssp HHCTTSCCCEEEECCTTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC---
T ss_pred HHhCCCCceEEEecCCCCCCCc-----cccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc---
Confidence 555 88999999874333332 267789999999999999999999999887 89999999999755432
Q ss_pred hcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccccccc------ccc-cCCCccCC----CcccCCCC
Q 009181 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA------VTE-WSGGLYVS----PTVAGSRP 390 (541)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~------~~~-~~~~~~~~----~~~~gsr~ 390 (541)
++. .++|+++.++||++..|.|+|+++.+++ +....... .+. +.++.... ....++..
T Consensus 208 --------~~~--~~~di~~~s~sK~~~~~gg~g~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 276 (398)
T 2fyf_A 208 --------VDI--AETDAYYFAPQKNFASDGGLWLAIMSPA-ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPA 276 (398)
T ss_dssp --------CCG--GGCSEEEECTTSTTCSCSSEEEEEECHH-HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCC
T ss_pred --------cCc--ccCcEEEEecCcccCCCCceEEEEECHH-HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCC
Confidence 222 2479999999999544446887666543 32211000 001 11110000 01112222
Q ss_pred CchHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHhhcCCCeEEec-CC--Cee-EEEEecC-CCCHHHHHHHHHhCC
Q 009181 391 GGLIAGAWAALMSLGQEG-YLENTKAIMEVSESIQKGIKEIPELFIIG-RP--DMT-IVAFGSD-VVDIFEVNDIMSSKG 464 (541)
Q Consensus 391 ~~~~a~~~~al~~lg~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~~--~~~-~v~f~~~-~~~~~~l~~~l~~~G 464 (541)
...++++.++++.+...| +++..++..++++++.+.|+++|++++.. +| ..+ +++|..+ +.+..++.+.|.++|
T Consensus 277 ~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 356 (398)
T 2fyf_A 277 IATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANG 356 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCC
Confidence 223456677777666666 89999999999999999999998999875 23 345 8888874 357889999999999
Q ss_pred ceeccC-C-C-CCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 465 WHLNPL-Q-R-PNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 465 ~~~~~~-~-~-~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
+.+... . . ++++|++++..++ +|+++++++|++++++
T Consensus 357 I~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 357 IVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp CBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred cEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 876431 1 1 4689999987655 9999999999998754
No 128
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.92 E-value=3e-23 Score=217.97 Aligned_cols=299 Identities=14% Similarity=0.064 Sum_probs=211.1
Q ss_pred HHHHHHHHhCCCCCCCCCccceEEcCcHHHHH--HHHHHHHHHHHH-------hhcCCCCCeEEecCCccchHHHHHhhc
Q 009181 176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESI--LLAVKSSRDYMR-------NKRGITRPEMIIPVSAHSAYDKAAQYF 246 (541)
Q Consensus 176 v~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~--~~al~a~r~~~~-------~~~Gi~~~~vi~~~~~h~s~~ka~~~~ 246 (541)
+++.+++++++++++ + ++|+|+++++ .++++++.+... +.+| ++|+++.++|+++...++..
T Consensus 83 lr~~ia~~~~~~~~~----i--~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~g---d~V~v~~p~y~~~~~~~~~~ 153 (427)
T 3ppl_A 83 IRQIWADLLGVPVEQ----V--LAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEET---VKWICPVPGYDRHFSITERF 153 (427)
T ss_dssp HHHHHHHHHTSCGGG----E--EECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSC---CEEEEEESCCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcce----E--EEeCCcHHHHHHHHHHHHHhccCCcccccccCCCC---CEEEEcCCCcHHHHHHHHHc
Confidence 455777777888765 6 8999999999 477777653100 0015 89999999999999999999
Q ss_pred CCeEEEeeCCCCCccCHHHHHHhhc-cCceEEEee-cCCCCCccccCHH---HHHHHH-HHcCCEEEEeCCcccchhhhh
Q 009181 247 NIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGS-APGFPHGIIDPIQ---ELGELA-LSHGTCLHVDLCLGGFVLPFA 320 (541)
Q Consensus 247 G~~v~~v~~~~~~~~d~~~Le~~i~-~~t~~vv~~-~~~~~~G~id~i~---~I~~la-~~~~i~lhvD~a~gg~~~~f~ 320 (541)
|++++.+|+++++ +|+++|+++++ +++++|+++ +++||||.+.|.+ +|+++| ++||+++|+|++|+.+.+
T Consensus 154 g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~--- 229 (427)
T 3ppl_A 154 GFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTL--- 229 (427)
T ss_dssp TCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS---
T ss_pred CCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCccccc---
Confidence 9999999998776 99999999995 678888755 8899999998876 888888 999999999999987543
Q ss_pred hhcCCCCCCCCc-------CCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch
Q 009181 321 KKLGYPIPPFDF-------SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (541)
Q Consensus 321 ~~~g~~~p~~~~-------~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~ 393 (541)
...+ .+..++ ...+.+++..+++|++.++.++|+++.+ +++........... +....
T Consensus 230 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~-~~l~~~~~~~~~~~-----------~~~~~-- 293 (427)
T 3ppl_A 230 TDEF--PEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTS-AENRKWYTGHAGIR-----------GIGPN-- 293 (427)
T ss_dssp SSCC--CCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECC-HHHHHHHHHHHHHH-----------CSCCC--
T ss_pred CCCC--CCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcC-HHHHHHHHHHhhcc-----------cCCCC--
Confidence 1111 111111 1456688888999997677789976654 43332211110000 00111
Q ss_pred HHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCC
Q 009181 394 IAGAWAALMSLGQ-----EGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKG 464 (541)
Q Consensus 394 ~a~~~~al~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G 464 (541)
...++++...+.. ..+++..+.+.++.+++.+.|.+ ++++++..+....++++.+++.+..++.+.|.++|
T Consensus 294 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~g 373 (427)
T 3ppl_A 294 KVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAG 373 (427)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCC
Confidence 2245555544432 33455555566666666666644 34677766666777888887667888999999999
Q ss_pred ceecc----C-----CCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 465 WHLNP----L-----QRPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 465 ~~~~~----~-----~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+.+.. + ..++++|+|++..+.+++++++++|+++++++.
T Consensus 374 v~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 374 IALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp EECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 87654 1 135799999987666999999999999988764
No 129
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.92 E-value=3.8e-23 Score=214.93 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v 253 (541)
.++++.+++++|.+ + + ++|+|||+|+.+++++++ .++| ++|+++.+.|+++..+++..|++++.+
T Consensus 35 ~~l~~~la~~~~~~--~----v--~~~~ggt~al~~~~~~l~----~~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~v 99 (394)
T 1o69_A 35 NRFEQSVKDYSKSE--N----A--LALNSATAALHLALRVAG----VKQD---DIVLASSFTFIASVAPICYLKAKPVFI 99 (394)
T ss_dssp HHHHHHHHHHHCCS--E----E--EEESCHHHHHHHHHHHTT----CCTT---CEEEEESSSCGGGTHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCC--c----E--EEeCCHHHHHHHHHHHcC----CCCC---CEEEECCCccHHHHHHHHHcCCEEEEE
Confidence 34666888888873 2 4 899999999999999872 1255 899999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhcc---CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc-cchhhhhhhcCCCCCC
Q 009181 254 PVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG-GFVLPFAKKLGYPIPP 329 (541)
Q Consensus 254 ~~~~~~~~d~~~Le~~i~~---~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g-g~~~~f~~~~g~~~p~ 329 (541)
|+++++.+|+++|++++++ ++++|++++ |+|...|+++|.++|+++|+++|+|++|+ |+.. . +....
T Consensus 100 ~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~---~--~~~~~- 170 (394)
T 1o69_A 100 DCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFY---K--NKALG- 170 (394)
T ss_dssp CBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE---T--TEETT-
T ss_pred EeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCccccee---C--Ccccc-
Confidence 9988899999999999987 788988886 79999999999999999999999999998 4322 0 11000
Q ss_pred CCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccC-CCccCCCcccCCCCCchHHHHHHHHHHHhHHH
Q 009181 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS-GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (541)
Q Consensus 330 ~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g 408 (541)
...++|+++++.||. ++|.++|+++.+++++..........+. ..........|.+++.....+.+++.. .+.
T Consensus 171 ---~~~~~~~~s~s~~K~-l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--l~~ 244 (394)
T 1o69_A 171 ---TFGEFGVYSYNGNKI-ITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQ--MEV 244 (394)
T ss_dssp ---SSSSEEEEECCTTSS-SCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHH--HTT
T ss_pred ---cccCcEEEEEeCCcc-CCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHH--HHH
Confidence 123589999999997 6788899887766554432211111110 000011122344444432233333322 245
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-----CeeEEEEecCC----------------------CCHHHHHHHHH
Q 009181 409 YLENTKAIMEVSESIQKGIKEIPELFIIGRP-----DMTIVAFGSDV----------------------VDIFEVNDIMS 461 (541)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----~~~~v~f~~~~----------------------~~~~~l~~~l~ 461 (541)
+++..++..++++++.+.|+++ +++..++ ...++++..++ .+..++.+.|.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK 322 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH
Confidence 6778899999999999999887 6665442 22256676652 15678999999
Q ss_pred hCCceeccCCCC-----------------------CeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 462 SKGWHLNPLQRP-----------------------NSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 462 ~~G~~~~~~~~~-----------------------~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
++|+.+.....+ ..+++.....++ +|++++++.|+++++.
T Consensus 323 ~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 323 NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999765432111 234444444444 9999999999988643
No 130
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=4.1e-24 Score=217.74 Aligned_cols=288 Identities=19% Similarity=0.182 Sum_probs=195.7
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH---HHhhcCCeEE
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---AAQYFNIKLW 251 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k---a~~~~G~~v~ 251 (541)
++++.+++++|.+. + ++++|||+|+.++++++.+ +| ++|+++.+.|++... .+...|++++
T Consensus 42 ~l~~~la~~~g~~~------~--~~~~~gt~a~~~~~~~~~~-----~g---d~Vl~~~~~~~~~~~~~~~~~~~g~~~~ 105 (347)
T 1jg8_A 42 ELERLAAETFGKEA------A--LFVPSGTMGNQVSIMAHTQ-----RG---DEVILEADSHIFWYEVGAMAVLSGVMPH 105 (347)
T ss_dssp HHHHHHHHHHTCSE------E--EEESCHHHHHHHHHHHHCC-----TT---CEEEEETTCHHHHSSTTHHHHHTCCEEE
T ss_pred HHHHHHHHHhCCce------E--EEecCcHHHHHHHHHHhcC-----CC---CEEEEcCcchhhhccccchhhccCeEEE
Confidence 35568888888752 3 7888999999988877642 66 899999999987543 5677899999
Q ss_pred EeeCCCCCccCHHHHHHhhcc------CceEEEeecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhh
Q 009181 252 RVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPH-GIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (541)
Q Consensus 252 ~v~~~~~~~~d~~~Le~~i~~------~t~~vv~~~~~~~~-G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~ 321 (541)
.+ .++++.+|+++|++++++ +|++|++++|+||+ |.+.| +++|.++|++||+++|+|+++..+...
T Consensus 106 ~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~--- 181 (347)
T 1jg8_A 106 PV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI--- 181 (347)
T ss_dssp EE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHH---
T ss_pred Ee-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchh---
Confidence 88 556788999999999985 68999999999999 99866 578999999999999999987422111
Q ss_pred hcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
..+. .......++|++++++||++.+| .|++++.++++..........|.++ .+.. ...+.++.
T Consensus 182 ~~~~---~~~~~~~~~d~~~~s~sK~l~~~--~G~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~ 245 (347)
T 1jg8_A 182 ASGV---PVKEYAGYADSVMFCLSKGLCAP--VGSVVVGDRDFIERARKARKMLGGG---------MRQA--GVLAAAGI 245 (347)
T ss_dssp HHCC---CHHHHHHTCSEEEEESSSTTCCS--SCEEEEECHHHHHHHHHHHHHHTCC---------CSST--HHHHHHHH
T ss_pred hcCC---ChHHhcccccEEEEecccccCCC--ceEEEEcCHHHHHHHHHHHHHcCCc---------hhHH--HHHHHHHH
Confidence 1111 01111135678888999996555 4544555554433221111112111 0111 11222222
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe-cCCCeeEEEEecC--CCCHHHHHHHHHhCCceeccCCCCCeEEE
Q 009181 402 MSLGQEGYLENTKAIMEVSESIQKGIKEIPELFII-GRPDMTIVAFGSD--VVDIFEVNDIMSSKGWHLNPLQRPNSIHI 478 (541)
Q Consensus 402 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~~~~~~v~f~~~--~~~~~~l~~~l~~~G~~~~~~~~~~~iRi 478 (541)
..+. ...+..++..++++++.+.|+++ ++++. .++..+++++..+ +.+..++.+.|.++|+.+...+ ++.+|+
T Consensus 246 ~~l~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-~~~iRl 321 (347)
T 1jg8_A 246 IALT--KMVDRLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVS-DTEIRL 321 (347)
T ss_dssp HHHH--HSSTTHHHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEE-TTEEEE
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecCC-CCeEEE
Confidence 2221 11222344456778888888887 77653 3456677888876 3468899999999998776543 468999
Q ss_pred EecCCC-HHHHHHHHHHHHHHHHHH
Q 009181 479 CVTLQH-VAVVDVFLRDLRESVETV 502 (541)
Q Consensus 479 ~~~~~~-~e~id~~i~~L~~~~~~l 502 (541)
+++..+ .+++++++++|+++++++
T Consensus 322 ~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 322 VTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 996554 499999999999988653
No 131
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.91 E-value=1.1e-23 Score=219.27 Aligned_cols=294 Identities=15% Similarity=0.084 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEE
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~ 252 (541)
..++++.+++++|.+ .. + ++|+|++ ++..++.++... .+| ++|+++.+.|+++..+++..|++++.
T Consensus 93 ~~~l~~~la~~~~~~-~~----i--~~~sG~~-a~~~~~~~l~~~---~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~ 158 (401)
T 2bwn_A 93 HRRLEAEIAGLHQKE-AA----L--VFSSAYN-ANDATLSTLRVL---FPG---LIIYSDSLNHASMIEGIKRNAGPKRI 158 (401)
T ss_dssp HHHHHHHHHHHTTCS-EE----E--EESCHHH-HHHHHHHHHHHH---STT---CEEEEETTCCHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHHHhCCC-cE----E--EECCcHH-HHHHHHHHHhcC---CCC---CEEEECchhhHHHHHHHHHcCCeEEE
Confidence 445677888899874 32 4 6666655 887777765321 255 89999999999999999999999999
Q ss_pred eeCCCCCccCHHHHHHhhc----cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 253 VPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 253 v~~~~~~~~d~~~Le~~i~----~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
+|.+ |+++|+++++ +++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.+ ...|....
T Consensus 159 v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~---~~~g~~~~ 230 (401)
T 2bwn_A 159 FRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMY---GPRGAGVA 230 (401)
T ss_dssp ECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS---STTSCCHH
T ss_pred EcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccccc---CCCCceee
Confidence 9976 7899999887 5799999999999999999999999999999999999999984322 00110000
Q ss_pred CCCcC-CCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHH
Q 009181 329 PFDFS-VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (541)
Q Consensus 329 ~~~~~-~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~ 407 (541)
.... ..++|.+..+++|. ++..| |+++. ++++..........|... .++ +....+++.++++.+...
T Consensus 231 -~~~~~~~~~~i~~~s~sK~-~~~~G-G~~~~-~~~~~~~l~~~~~~~~~~-------~~~-~~~~~~a~~~al~~~~~~ 298 (401)
T 2bwn_A 231 -ERDGLMHRIDIFNGTLAKA-YGVFG-GYIAA-SARMVDAVRSYAPGFIFS-------TSL-PPAIAAGAQASIAFLKTA 298 (401)
T ss_dssp -HHHTCGGGCSEEEEESSST-TCSCC-EEEEE-CHHHHHHHHHHCHHHHTS-------BCC-CHHHHHHHHHHHHHHTSH
T ss_pred -eccCccccCcEEEeechhh-ccCCC-CEEec-CHHHHHHHHHhCcCceec-------CCC-CHHHHHHHHHHHHHHHhc
Confidence 0011 12357888899999 55555 76555 444332211101111100 111 113355667788777667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC-CCHHHHHHHHH-hCCceeccCC---CC---CeEEEE
Q 009181 408 GYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV-VDIFEVNDIMS-SKGWHLNPLQ---RP---NSIHIC 479 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~-~~G~~~~~~~---~~---~~iRi~ 479 (541)
++++..++..++++++.+.|+++ ++++.. +..+++++...+ .+..++.+.|. ++|+.+.... .+ +++|++
T Consensus 299 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis 376 (401)
T 2bwn_A 299 EGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFT 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEE
Confidence 78899999999999999999987 887764 445688888754 35678888885 7898764322 22 489999
Q ss_pred ecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 480 VTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 480 ~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
++..++ ++++++++.|+++++++
T Consensus 377 ~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 377 PSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CCTTSCHHHHHHHHHHHHHHC---
T ss_pred eeCCCCHHHHHHHHHHHHHHHHhc
Confidence 997655 99999999999987653
No 132
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.91 E-value=2.5e-23 Score=232.20 Aligned_cols=299 Identities=13% Similarity=0.061 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v 253 (541)
.+.++.+++++|.+.. + ++++|+++|+..++.++.. +| ++|+++.++|+++..++...|++++.+
T Consensus 208 ~~~ee~la~l~G~d~~-----i--~~~~Gtt~a~~~~i~al~~-----~G---D~Vlv~~~~h~s~~~~~~~~G~~~v~v 272 (755)
T 2vyc_A 208 GESEKYAARVFGADRS-----W--SVVVGTSGSNRTIMQACMT-----DN---DVVVVDRNCHKSIEQGLMLTGAKPVYM 272 (755)
T ss_dssp HHHHHHHHHHHTCSEE-----E--EESSHHHHHHHHHHHHHCC-----TT---CEEEEESSCCHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHhCCCce-----E--EECCcHHHHHHHHHHHhcC-----CC---CEEEECCCchHHHHHHHHHcCCEEEEE
Confidence 4567799999998743 3 7899999999999999853 67 999999999999999999999999999
Q ss_pred eCCCC-----Ccc-----CHHHHHHhhcc--Cce--------EEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 254 PVDKE-----FRA-----DVKAIKKYINR--NTV--------LIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 254 ~~~~~-----~~~-----d~~~Le~~i~~--~t~--------~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+.+.+ +.+ |+++|+++|++ +++ ++++++| |++|.+.|+++|+++|++||+++|+|+||+
T Consensus 273 ~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~ 351 (755)
T 2vyc_A 273 VPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_dssp CCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTC
T ss_pred eCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCc
Confidence 88642 346 99999999975 343 8888998 589999999999999999999999999998
Q ss_pred cchhhhhhhcCCCCCCCCcCCCC--ceE------EEeCCCCCCCCCCCceEEEEecc--cccccccccccccCCCccCCC
Q 009181 314 GFVLPFAKKLGYPIPPFDFSVQG--VTS------ISVDVHKYGLAPKGTSVVLYRNR--EIRKHQFVAVTEWSGGLYVSP 383 (541)
Q Consensus 314 g~~~~f~~~~g~~~p~~~~~~~g--vds------is~~~hK~~~~p~g~g~ll~~~~--~~~~~~~~~~~~~~~~~~~~~ 383 (541)
+.+. |..... +.... .| +|+ ++.++||++.+|.++|+++++++ .+....+..... .
T Consensus 352 ~~~~-~~~~~~----~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~--------~ 417 (755)
T 2vyc_A 352 GYAR-FNPIYA----DHYAM-RGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYM--------M 417 (755)
T ss_dssp TTGG-GCGGGT----TSSSS-CSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHH--------H
T ss_pred hhcc-cCcccC----Ccchh-cCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHH--------H
Confidence 6432 211110 00001 33 444 89999999888888898888765 121111100000 0
Q ss_pred cccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCC---------eEEecCCC--------------
Q 009181 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPE---------LFIIGRPD-------------- 440 (541)
Q Consensus 384 ~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~---------~~v~~~~~-------------- 440 (541)
...++.+...++++.++++.+..+|.++..++..++++++++.|+++++ +++++++.
T Consensus 418 ~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (755)
T 2vyc_A 418 HATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFAD 497 (755)
T ss_dssp TSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGG
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccccccccccccc
Confidence 1112333445778888888887776688999999999999999998877 87776531
Q ss_pred -----------------------------------eeEEEEecCC-----------CCHHHHHHHHHhCCceeccCCCCC
Q 009181 441 -----------------------------------MTIVAFGSDV-----------VDIFEVNDIMSSKGWHLNPLQRPN 474 (541)
Q Consensus 441 -----------------------------------~~~v~f~~~~-----------~~~~~l~~~l~~~G~~~~~~~~~~ 474 (541)
...+.|..++ .+..++.+.|.++|+..... ..+
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~-~~~ 576 (755)
T 2vyc_A 498 APTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT-TDF 576 (755)
T ss_dssp SCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE-CSS
T ss_pred ccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec-CCC
Confidence 1356666552 35589999999998766433 357
Q ss_pred eEEEEecCCCH-HHHHHHHHHHHHHHHHHH
Q 009181 475 SIHICVTLQHV-AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 475 ~iRi~~~~~~~-e~id~~i~~L~~~~~~l~ 503 (541)
.+|++++..++ +++++++++|+++.+...
T Consensus 577 ~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 577 QIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp EEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 89999998777 999999999999987664
No 133
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.91 E-value=5.8e-23 Score=215.32 Aligned_cols=303 Identities=12% Similarity=0.043 Sum_probs=208.3
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHH--HHHHHHHHHHHhh-------cCCCCCeEEecCCccchHHHHHhh
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESIL--LAVKSSRDYMRNK-------RGITRPEMIIPVSAHSAYDKAAQY 245 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~--~al~a~r~~~~~~-------~Gi~~~~vi~~~~~h~s~~ka~~~ 245 (541)
++++.+++++++++++ + ++|+|+++++. ++++++.+.. ++ +| ++|+++.++|+.+...++.
T Consensus 74 ~lr~~ia~~~~~~~~~----i--~~t~G~~~al~~~~~~~~l~~~~-~g~~~~~~~~g---d~Vlv~~p~y~~~~~~~~~ 143 (423)
T 3ez1_A 74 SARALFAGYLDVKAEN----V--LVWNNSSLELQGLVLTFALLHGV-RGSTGPWLSQT---PKMIVTVPGYDRHFLLLQT 143 (423)
T ss_dssp HHHHHHHHHTTSCGGG----E--EECSSCHHHHHHHHHHHHHHTCC-TTCSSCGGGGC---CEEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhh----E--EEeCCcHHHHHHHHHHHHHhccC-CCccccccCCC---CEEEEcCCCcHHHHHHHHH
Confidence 3555778888888765 6 99999999998 7887765200 00 04 8999999999999999999
Q ss_pred cCCeEEEeeCCCCCccCHHHHHHhh--ccCceEEEe-ecCCCCCccccCHH---HHHHHH-HHcCCEEEEeCCcccchhh
Q 009181 246 FNIKLWRVPVDKEFRADVKAIKKYI--NRNTVLIVG-SAPGFPHGIIDPIQ---ELGELA-LSHGTCLHVDLCLGGFVLP 318 (541)
Q Consensus 246 ~G~~v~~v~~~~~~~~d~~~Le~~i--~~~t~~vv~-~~~~~~~G~id~i~---~I~~la-~~~~i~lhvD~a~gg~~~~ 318 (541)
.|++++.+|+++++ +|+++|++++ ++++++|++ ++++||||.+.|.+ +|+++| ++||+++|+|++|+.+.+.
T Consensus 144 ~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~ 222 (423)
T 3ez1_A 144 LGFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLV 222 (423)
T ss_dssp HTCEEEEEEEETTE-ECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCC
T ss_pred cCCEEEeccCCCCC-CCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcC
Confidence 99999999998765 9999999999 578888864 58999999998876 888888 8999999999999843221
Q ss_pred hhhhcCCCC-CCCCc----CCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch
Q 009181 319 FAKKLGYPI-PPFDF----SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (541)
Q Consensus 319 f~~~~g~~~-p~~~~----~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~ 393 (541)
..-+... +.+.+ ...+.+++..+++|++.++.++|+++.++ ++..........+ +....
T Consensus 223 --~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~~~~~~~~~~~~~-----------~~~~~-- 286 (423)
T 3ez1_A 223 --EEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE-DNIRWLSKYLGAQ-----------SIGPN-- 286 (423)
T ss_dssp --SSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH-HHHHHHHHHHHHS-----------CSCCC--
T ss_pred --CCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH-HHHHHHHHHHhhh-----------ccCCC--
Confidence 1000000 00111 23456788889999877778899866644 3332211111000 00111
Q ss_pred HHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHh----hcCC-CeEEecCCCeeEEEEecCCCCHHHHHHHHHh
Q 009181 394 IAGAWAALMSLGQ------EGYLENTKAIMEVSESIQKGI----KEIP-ELFIIGRPDMTIVAFGSDVVDIFEVNDIMSS 462 (541)
Q Consensus 394 ~a~~~~al~~lg~------~g~~~~~~~~~~~a~~l~~~L----~~~~-~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~ 462 (541)
...++++...+.. ..+++..+.+.+..+.+.+.| .+++ ++++..+....++++.+++.+..++.+.|.+
T Consensus 287 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~ 366 (423)
T 3ez1_A 287 KVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEA 366 (423)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHH
Confidence 2244444444433 234444444444555555444 4454 4777666566778888765577889999999
Q ss_pred CCceeccC---------CCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 463 KGWHLNPL---------QRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 463 ~G~~~~~~---------~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
+|+.+... ..++++|+|++..+.+++++++++|+++++++..
T Consensus 367 ~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 367 AGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp TTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99877541 1347999999866679999999999999987653
No 134
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.91 E-value=4.3e-23 Score=214.79 Aligned_cols=281 Identities=15% Similarity=0.117 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH----hhc
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYF 246 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~----~~~ 246 (541)
....++++++++++|.+ . . +++++|++|+..+++++.. +| ++|+++.+.|+++...+ +..
T Consensus 64 ~~~~~l~~~la~~~g~~-~-----~--i~~~sG~~a~~~~l~~~~~-----~g---d~vi~~~~~~~~~~~~~~~~~~~~ 127 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGE-A-----G--LATASGISAITTTLLTLCQ-----QG---DHIVSASAIYGCTHAFLSHSMPKF 127 (398)
T ss_dssp HHHHHHHHHHHHHHTCS-E-----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEESSSCHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHHHHHhCCC-c-----E--EEECCHHHHHHHHHHHHhC-----CC---CEEEEcCCCcccHHHHHHHHHHHc
Confidence 34456777999999986 3 2 6677788999999998742 56 89999999999988776 788
Q ss_pred CCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCC
Q 009181 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP 326 (541)
Q Consensus 247 G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~ 326 (541)
|++++.+|.+ |++++++++++++++|++++|+||+|.+.|+++|+++|++||+++|+|++|+.+..+
T Consensus 128 g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-------- 194 (398)
T 2rfv_A 128 GINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ-------- 194 (398)
T ss_dssp TCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTC--------
T ss_pred CCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC--------
Confidence 9999999986 899999999999999999999999999999999999999999999999999865431
Q ss_pred CCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHH
Q 009181 327 IPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL 404 (541)
Q Consensus 327 ~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~l 404 (541)
. ++ ..++|+++.++||++.+|.+ +|+++.+++.+..........+.+ . ......+++++..+
T Consensus 195 ~-~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~l 258 (398)
T 2rfv_A 195 Q-PL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITG----------G--CMSPFNAWLTLRGV 258 (398)
T ss_dssp C-GG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTC----------C--CCCHHHHHHHHHHH
T ss_pred C-ch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCC----------C--CCCHHHHHHHHhhh
Confidence 1 12 23689999999999666665 587666544322111111111100 0 11133566665555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------eEEecC---CCeeEEEEecCCC--CHHHHHHHHHhCCc
Q 009181 405 GQEGYLENTKAIMEVSESIQKGIKEIPE--------------LFIIGR---PDMTIVAFGSDVV--DIFEVNDIMSSKGW 465 (541)
Q Consensus 405 g~~g~~~~~~~~~~~a~~l~~~L~~~~~--------------~~v~~~---~~~~~v~f~~~~~--~~~~l~~~l~~~G~ 465 (541)
. .+....++..++++++.+.|++.+. +++..+ ...++++|.+++. +..++.+.+...|+
T Consensus 259 ~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i 336 (398)
T 2rfv_A 259 K--TLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLL 336 (398)
T ss_dssp T--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEE
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCccee
Confidence 2 2344455566667777777766543 333322 2477888887642 22233333322332
Q ss_pred eecc-------------------------CCC-CCeEEEEecCCCH-HHHHHHHHHHHHH
Q 009181 466 HLNP-------------------------LQR-PNSIHICVTLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 466 ~~~~-------------------------~~~-~~~iRi~~~~~~~-e~id~~i~~L~~~ 498 (541)
.+.. .+. ++.+|+|++..++ ++++++++.|+++
T Consensus 337 ~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 337 AVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp CSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 2110 111 5799999998887 8888888887754
No 135
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.91 E-value=2.4e-23 Score=217.96 Aligned_cols=328 Identities=10% Similarity=0.073 Sum_probs=219.3
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC
Q 009181 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~ 225 (541)
..+.+++.........+|....+..++++++.+++....+.+... ++ ++|+||++|+..+++++.+ +|
T Consensus 59 ~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~i--~~t~g~~~al~~~~~~l~~-----~g-- 126 (418)
T 3rq1_A 59 KTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHI---RS--IATAGGTGGIHHLIHNYTE-----PG-- 126 (418)
T ss_dssp HHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEE---EE--EEESHHHHHHHHHHHHHSC-----TT--
T ss_pred HHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccc---cE--EECCchHHHHHHHHHHhcC-----CC--
Confidence 445555555433223344445567778887777776666543221 25 8999999999999998753 66
Q ss_pred CCeEEecCCccchHHHHHhhcCCeEEEeeCC-CCCccCHHHHHHhhcc----Cce-EEEeecC-CCCCccccCHHH---H
Q 009181 226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD-KEFRADVKAIKKYINR----NTV-LIVGSAP-GFPHGIIDPIQE---L 295 (541)
Q Consensus 226 ~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~-~~~~~d~~~Le~~i~~----~t~-~vv~~~~-~~~~G~id~i~~---I 295 (541)
++|+++.+.|+++...++..|++++.+|++ +++.+|+++|++++++ ++. ++++++| +||+|.+.|.++ |
T Consensus 127 -d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l 205 (418)
T 3rq1_A 127 -DEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSI 205 (418)
T ss_dssp -CEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred -CEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 899999999999999999999999999985 4679999999999985 665 8888999 999999988654 5
Q ss_pred HHHHH------HcCCEEEEeCCcccchhhhh--hhcCCCCCCCCcCCCCc-eEEEeCCCCCCC-CCCCceEEEE--eccc
Q 009181 296 GELAL------SHGTCLHVDLCLGGFVLPFA--KKLGYPIPPFDFSVQGV-TSISVDVHKYGL-APKGTSVVLY--RNRE 363 (541)
Q Consensus 296 ~~la~------~~~i~lhvD~a~gg~~~~f~--~~~g~~~p~~~~~~~gv-dsis~~~hK~~~-~p~g~g~ll~--~~~~ 363 (541)
+++|+ +||+++++|++|.++...-. ..... .+.-....+ .++..+++|.+. .+.++|+++. ++++
T Consensus 206 ~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~ 282 (418)
T 3rq1_A 206 LNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFN---KFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEE 282 (418)
T ss_dssp HHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGG---GGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHH
T ss_pred HHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHH---HHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHH
Confidence 55555 89999999999977653100 00000 000001111 367779999842 3345788766 2555
Q ss_pred ccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 009181 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE--------GYLENTKAIMEVSESIQKGIKEIPELFI 435 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~--------g~~~~~~~~~~~a~~l~~~L~~~~~~~v 435 (541)
+............. +.......+++.++...+... ..+++.++..++++++.+.|+++ ++++
T Consensus 283 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 352 (418)
T 3rq1_A 283 IADEFFEVNKSTSR---------ATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPM 352 (418)
T ss_dssp HHHHHHHHHHHHHH---------HHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCC
T ss_pred HHHHHHHHHHHHHh---------hccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 44322111000000 000011133555555444322 23355677788889999999887 7776
Q ss_pred ecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 436 IGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 436 ~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
..+....++++... +..++.+.|.++|+.+... ++++|+|++..+.+++++++++|+++++++.
T Consensus 353 ~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g--~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 353 LPYRGGFFITIPTD--SANAICEELKKEHIYVIAL--ANGIRIAACGIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp CCCCSSSEEEEECT--THHHHHHHHHHTTEECEEC--SSEEEEEGGGSCHHHHTTHHHHHHHHHHHTT
T ss_pred CCCCceEEEEcCCC--CHHHHHHHHHhCCEEEecC--CCCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 64433334444442 6788999999999877653 4689999885577999999999999998764
No 136
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.91 E-value=1.6e-22 Score=211.10 Aligned_cols=280 Identities=16% Similarity=0.143 Sum_probs=200.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH----HHhhcCCe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNIK 249 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k----a~~~~G~~ 249 (541)
.++++.+++++|.+ . + ++++||++|+..+++++.+ +| ++|+++.+.|+++.. .++..|++
T Consensus 65 ~~l~~~ia~~~g~~-~-----~--i~~~~g~~ai~~~~~~l~~-----~g---d~Vl~~~~~y~~~~~~~~~~~~~~g~~ 128 (404)
T 1e5e_A 65 SNLEGKIAFLEKTE-A-----C--VATSSGMGAIAATVLTILK-----AG---DHLISDECLYGCTHALFEHALTKFGIQ 128 (404)
T ss_dssp HHHHHHHHHHHTCS-E-----E--EEESSHHHHHHHHHHHHCC-----TT---CEEEEESCCCHHHHHHHHTHHHHTTCE
T ss_pred HHHHHHHHHHhCCC-c-----E--EEeCChHHHHHHHHHHHhC-----CC---CEEEEeCCCchhHHHHHHHHHHHcCCE
Confidence 34666888888886 2 3 6788889999999988742 66 899999999999888 78889999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHH-cCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS-HGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~-~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
++.+|.+ |+++|+++++++|++|++++|+||+|.+.|+++|+++|++ +|+++++|++|+.+... .
T Consensus 129 ~~~v~~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~--------~- 194 (404)
T 1e5e_A 129 VDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT--------N- 194 (404)
T ss_dssp EEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC--------C-
T ss_pred EEEECCC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC--------C-
Confidence 9999986 8899999999999999999999999999999999999999 99999999999876531 1
Q ss_pred CCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhH
Q 009181 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (541)
Q Consensus 329 ~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~ 406 (541)
+++ .|+|+++.++||++.+|.+ +|+++.+++.+..........|.+ .. .....+|+++..+.
T Consensus 195 ~~~---~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g----------~~--~~~~~~~~~~~~l~- 258 (404)
T 1e5e_A 195 PVD---FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG----------SV--ISPHDAWLITRGLS- 258 (404)
T ss_dssp GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC----------CC--CCHHHHHHHHHHHT-
T ss_pred ccc---cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCC----------CC--CCHHHHHHHHHhHh-
Confidence 122 3789999999999666655 587776554332121111111101 11 11336677665553
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeEE-ecC------------C----CeeEEEEecCCCCHHHHHHHHHhCCceecc
Q 009181 407 EGYLENTKAIMEVSESIQKGIKEIPELFI-IGR------------P----DMTIVAFGSDVVDIFEVNDIMSSKGWHLNP 469 (541)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~v-~~~------------~----~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~ 469 (541)
......++..++++++.+.+++.+.+.- ..+ + ..+++.|.+.+. ..++.+.+.+.|+....
T Consensus 259 -~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~i~~~~ 336 (404)
T 1e5e_A 259 -TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNLKLITLA 336 (404)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTCSSSEES
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-HHHHHHHHHhCCCceec
Confidence 2455566667777777777777654431 111 1 267888877542 24456667777753222
Q ss_pred --C--------------------------CC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 470 --L--------------------------QR-PNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 470 --~--------------------------~~-~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
+ +. ++.+|+|++. +++++++++|+++++.+..
T Consensus 337 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 337 VSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDALLR 397 (404)
T ss_dssp SCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHHHHH
Confidence 1 12 4789999997 7899999999999876553
No 137
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.91 E-value=8.5e-23 Score=212.23 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=194.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH----hhcCCe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNIK 249 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~----~~~G~~ 249 (541)
.++++.+++++|.+. + ++++||++|+..+++++. ++| ++|+++.+.|++....+ +..|++
T Consensus 69 ~~l~~~la~~~g~~~------~--~~~~sGt~A~~~al~~~~-----~~g---d~Vi~~~~~y~~~~~~~~~~~~~~g~~ 132 (392)
T 3qhx_A 69 TALEAALAAVEDAAF------G--RAFSSGMAAADCALRAML-----RPG---DHVVIPDDAYGGTFRLIDKVFTGWNVE 132 (392)
T ss_dssp HHHHHHHHHHTTCSE------E--EEESSHHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHHTGGGGTCE
T ss_pred HHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEeCCCcchHHHHHHHHHHhcCcE
Confidence 346668899998862 3 788999999999999874 256 89999999999876665 677999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCC
Q 009181 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (541)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~ 329 (541)
++.++++ |+++++++++++|++|++++|+||+|.+.|+++|+++|++||+++|+|++|+.+..
T Consensus 133 ~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~------------ 195 (392)
T 3qhx_A 133 YTPVALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL------------ 195 (392)
T ss_dssp EEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT------------
T ss_pred EEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc------------
Confidence 9999986 99999999999999999999999999999999999999999999999999975432
Q ss_pred CCcCCCCceEEEeCCCCCCCCCCC---ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhH
Q 009181 330 FDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (541)
Q Consensus 330 ~~~~~~gvdsis~~~hK~~~~p~g---~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~ 406 (541)
.+....|+|+++.++||++ ++.| +|+++.+++++.......... .|.+.+ ...+|++++.+
T Consensus 196 ~~~~~~~~di~~~S~sK~l-g~~g~~~~G~v~~~~~~~~~~l~~~~~~-----------~g~~~~--~~~~~~~~~~l-- 259 (392)
T 3qhx_A 196 QQPLSLGADVVLHSTTKYI-GGHSDVVGGALVTNDEELDQSFAFLQNG-----------AGAVPG--PFDAYLTMRGL-- 259 (392)
T ss_dssp CCGGGGTCSEEEEETTTTT-TCSSCCCCEEEEESCHHHHHHHHHHHHH-----------HCCCCC--HHHHHHHHHHH--
T ss_pred CChHHhCCcEEEEcCcccc-CCCCCceEEEEEECcHHHHHHHHHHHHh-----------cCCCCC--HHHHHHHHhhh--
Confidence 1122347899999999994 5554 787666654443322111110 112222 23667766544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC-----------------eeEEEEecCC--CCHHHHHHHHHhCCcee
Q 009181 407 EGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD-----------------MTIVAFGSDV--VDIFEVNDIMSSKGWHL 467 (541)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----------------~~~v~f~~~~--~~~~~l~~~l~~~G~~~ 467 (541)
+.+....++..++++++.+.|++.|.+..+..|. ..+++|.+++ .....+.+.|...|+.+
T Consensus 260 ~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 339 (392)
T 3qhx_A 260 KTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAE 339 (392)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECC
Confidence 3456677888899999999999988876553322 5688998875 23455666665444211
Q ss_pred c----------c------------C-CCCCeEEEEecCCCH-HHHHHHHHH
Q 009181 468 N----------P------------L-QRPNSIHICVTLQHV-AVVDVFLRD 494 (541)
Q Consensus 468 ~----------~------------~-~~~~~iRi~~~~~~~-e~id~~i~~ 494 (541)
+ . . -.++.+|+|++..++ ++++.+.++
T Consensus 340 s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~a 390 (392)
T 3qhx_A 340 SLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQA 390 (392)
T ss_dssp CCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHH
T ss_pred CCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 1 0 0 124789999998665 444444443
No 138
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.91 E-value=2.2e-23 Score=217.33 Aligned_cols=303 Identities=12% Similarity=0.074 Sum_probs=213.1
Q ss_pred cccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH
Q 009181 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (541)
Q Consensus 163 ~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka 242 (541)
|....+..++++++.+++.+.+|.+... ..++ ++|+||++|+..+++++.+ +| ++|+++.+.|.++...
T Consensus 57 y~~~~g~~~l~~~la~~~~~~~~~~~~~-~~~i--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~p~~~~~~~~ 125 (410)
T 3e2y_A 57 YTRGFGHPALVKALSCLYGKIYQRQIDP-NEEI--LVAVGAYGSLFNSIQGLVD-----PG---DEVIIMVPFYDCYEPM 125 (410)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHTSCCCT-TTSE--EEESHHHHHHHHHHHHHCC-----TT---CEEEEEESCCTTHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCC-CCCE--EEeCCcHHHHHHHHHHhcC-----CC---CEEEEeCCCchhhHHH
Confidence 3333456778888888888888865210 0136 8999999999999998743 56 8999999999999999
Q ss_pred HhhcCCeEEEeeCC-----------CCCccCHHHHHHhhccCceEEEeecCCCCCccc---cCHHHHHHHHHHcCCEEEE
Q 009181 243 AQYFNIKLWRVPVD-----------KEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHV 308 (541)
Q Consensus 243 ~~~~G~~v~~v~~~-----------~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~i---d~i~~I~~la~~~~i~lhv 308 (541)
++..|.+++.+|++ .++.+|++++++++++++++|++++|+||+|.+ +++++|+++|++||+++|+
T Consensus 126 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 205 (410)
T 3e2y_A 126 VRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCIS 205 (410)
T ss_dssp HHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 99999999999986 356789999999999999999999999999999 5699999999999999999
Q ss_pred eCCcccchhhhhhhcCCCCCCCC-c-CCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcc
Q 009181 309 DLCLGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTV 385 (541)
Q Consensus 309 D~a~gg~~~~f~~~~g~~~p~~~-~-~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (541)
|++|+++... |...+.+. . ...+.+++..+++|.+. ++.++|+++.++ ++.......... .
T Consensus 206 De~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~~~---~------- 269 (410)
T 3e2y_A 206 DEVYEWLVYT-----GHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA-HLIKHLQTVQQN---S------- 269 (410)
T ss_dssp ECTTTTCBCT-----TCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH-HHHHHHHHHHHT---T-------
T ss_pred EhhhhhcccC-----CCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECH-HHHHHHHHHHHh---h-------
Confidence 9999876541 11000111 1 12245677888899842 344588766544 333221110000 0
Q ss_pred cCCCCCchHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCC----C
Q 009181 386 AGSRPGGLIAGAWAALMSLG---------QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV----D 452 (541)
Q Consensus 386 ~gsr~~~~~a~~~~al~~lg---------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~----~ 452 (541)
.......++.++...+. .+.+++..++..++++++.+.|+++ ++++..+....++++..... +
T Consensus 270 ---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 345 (410)
T 3e2y_A 270 ---FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLS 345 (410)
T ss_dssp ---TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGCCCCT
T ss_pred ---ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhhcccc
Confidence 00011223444433332 4567888899999999999999998 88887666666666655321 1
Q ss_pred --------HHHHHHHH-HhCCceecc---CC-------CCCeEEEEecCCCHHHHHHHHHHHHH
Q 009181 453 --------IFEVNDIM-SSKGWHLNP---LQ-------RPNSIHICVTLQHVAVVDVFLRDLRE 497 (541)
Q Consensus 453 --------~~~l~~~l-~~~G~~~~~---~~-------~~~~iRi~~~~~~~e~id~~i~~L~~ 497 (541)
..++...+ .++|+.+.. +. .++++|+|++. +.+++++++++|++
T Consensus 346 ~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 346 DMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA 408 (410)
T ss_dssp TCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred cccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence 23666655 567876532 22 13789999986 66999999998875
No 139
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.91 E-value=3.4e-23 Score=219.81 Aligned_cols=309 Identities=12% Similarity=0.069 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCcc-ceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH------
Q 009181 168 SVARFEAEVIAMTAALLGNKEKASGGQV-CGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD------ 240 (541)
Q Consensus 168 ~~~~~e~ev~~~la~l~g~~~~~~~~~v-~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~------ 240 (541)
...++|.++++++++++|.+.+. + +-+++++||+||..++.++.+ +| |+|+++...|.+..
T Consensus 97 ~~~~lE~~a~~~~a~l~g~~~~~----~~~~v~~~sGt~An~~al~al~~-----pG---D~Vl~~~~~h~g~l~h~~~~ 164 (490)
T 2a7v_A 97 VVDEIELLCQRRALEAFDLDPAQ----WGVNVQPYSGSPANLAVYTALLQ-----PH---DRIMGLDLPDGGHLTHGYMS 164 (490)
T ss_dssp -CTHHHHHHHHHHHHHTTCCTTT----EEEECCCSSHHHHHHHHHHHHCC-----SC---EECCC---------------
T ss_pred HHHHHHHHHHHHHHHHcCCCccc----CceEEeCCchHHHHHHHHHHHcC-----CC---CEecccCccccccccchhhh
Confidence 34588888999999999998742 1 115667899999999998853 77 99999998886532
Q ss_pred --HHHhhcCCeEE--EeeCC-CCCccCHHHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 241 --KAAQYFNIKLW--RVPVD-KEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 241 --ka~~~~G~~v~--~v~~~-~~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
+.+...|..+. .++++ +++.+|+++|++++. .+|++|+++.++|| ...|+++|+++|++||++||+|++++.
T Consensus 165 ~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~ 242 (490)
T 2a7v_A 165 DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp ----------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGH
T ss_pred cchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEcccccc
Confidence 13445665444 44455 478999999999996 47888888777764 577999999999999999999999865
Q ss_pred chhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccc------cc-cccccccCCCccCCCcccC
Q 009181 315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRK------HQ-FVAVTEWSGGLYVSPTVAG 387 (541)
Q Consensus 315 ~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~g 387 (541)
.++. .|. . +..+ .++|+++.++||++.||.| |+++.++..... .. +.....+. ....+...|
T Consensus 243 glv~----~g~-~-~~~~--~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~--~~~~~g~qg 311 (490)
T 2a7v_A 243 GLVA----AKV-I-PSPF--KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRIN--FAVFPSLQG 311 (490)
T ss_dssp HHHH----TTS-S-CCGG--GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHH--HHHTTTTCC
T ss_pred cccc----CCc-C-CCCC--CCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHH--HHhcccCCC
Confidence 4431 121 1 1112 3789999999998777876 877776541100 00 00000000 000112223
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-CCeeEEEEecCC--CCHHHHHHHHHhCC
Q 009181 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR-PDMTIVAFGSDV--VDIFEVNDIMSSKG 464 (541)
Q Consensus 388 sr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~f~~~~--~~~~~l~~~l~~~G 464 (541)
+.....++++.+++.....+.+++..++..+++++|++.|++. |++++.. .+.+++++.+.+ .+..++.+.|.+.|
T Consensus 312 gp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~G 390 (490)
T 2a7v_A 312 GPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVS 390 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCC
Confidence 3333446666667665544567889999999999999999997 9998753 346677777643 46788999999999
Q ss_pred ceeccC--------CCCCeEEEEecC-----CCHHHHHHHHHHHHHHHHHH
Q 009181 465 WHLNPL--------QRPNSIHICVTL-----QHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 465 ~~~~~~--------~~~~~iRi~~~~-----~~~e~id~~i~~L~~~~~~l 502 (541)
+.++.. ..+..+|++.+. .+.+|++++++.|.++++..
T Consensus 391 I~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 391 ITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp EECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 876521 124689997643 23489999999999988643
No 140
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.7e-22 Score=216.38 Aligned_cols=325 Identities=12% Similarity=0.115 Sum_probs=217.5
Q ss_pred HHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhC-CC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC-
Q 009181 149 NEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG-NK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI- 224 (541)
Q Consensus 149 ~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g-~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi- 224 (541)
.+++..........|....+..++++++.+++.+..| .+ +++ + ++|+|+++++.+++.++.+ +|-
T Consensus 111 ~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~----i--~~t~G~~~ai~~~~~~l~~-----~gd~ 179 (498)
T 3ihj_A 111 RRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDN----I--YLTTGASDGISTILKILVS-----GGGK 179 (498)
T ss_dssp HHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGG----E--EEESSHHHHHHHHHHHHCC-----CCGG
T ss_pred HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCccc----E--EEcCCHHHHHHHHHHHHcC-----CCCC
Confidence 4444443222234565667778889989999988885 53 444 6 8999999999999998753 330
Q ss_pred CCCeEEecCCccchHHHHHhhcCCeEEEeeCCC--CCccCHHHHHHhhcc-----CceEEEeecCCCCCccccC---HHH
Q 009181 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR-----NTVLIVGSAPGFPHGIIDP---IQE 294 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~-----~t~~vv~~~~~~~~G~id~---i~~ 294 (541)
.+++|+++.+.|+++..+++.+|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.+.+ +++
T Consensus 180 ~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~ 259 (498)
T 3ihj_A 180 SRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIED 259 (498)
T ss_dssp GSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHH
Confidence 014899999999999999999999999999985 578999999999987 6899999999999999966 678
Q ss_pred HHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCC--------CCce-EEEeCCCCCCC--CCCCceEEEE--ec
Q 009181 295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV--------QGVT-SISVDVHKYGL--APKGTSVVLY--RN 361 (541)
Q Consensus 295 I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~--------~gvd-sis~~~hK~~~--~p~g~g~ll~--~~ 361 (541)
|+++|++||+++++|++|+.+.+. .... .+.+.-.. ..+. ++..+++|.+. ++..+|++++ .+
T Consensus 260 i~~la~~~~~~li~De~y~~~~~~--~~~~--~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~ 335 (498)
T 3ihj_A 260 VIHFAWEEKLFLLADEVYQDNVYS--PDCR--FHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLH 335 (498)
T ss_dssp HHHHHHHHTCEEEEECTTTTCBCC--TTCC--CCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCC
T ss_pred HHHHHHHcCcEEEEEcCccccccC--CCCC--cCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCC
Confidence 999999999999999999876541 0000 01111000 1232 45568899953 4556898775 45
Q ss_pred ccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHhhc
Q 009181 362 REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG------------QEGYLENTKAIMEVSESIQKGIKE 429 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg------------~~g~~~~~~~~~~~a~~l~~~L~~ 429 (541)
+++..........+ ......+++++...+. .....++.+++.++++++.+.|++
T Consensus 336 ~~l~~~l~~~~~~~--------------~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 401 (498)
T 3ihj_A 336 PEIKGQLVKLLSVR--------------LCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ 401 (498)
T ss_dssp HHHHHHHHHHHHHS--------------CCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc--------------CCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54443321111100 0111234444333332 123456678888999999999999
Q ss_pred CCCeEEecCCCeeEEEE-ecC------------CCCHHH--HHHHHHhCCceecc---CC---CCCeEEEEecCCCHHHH
Q 009181 430 IPELFIIGRPDMTIVAF-GSD------------VVDIFE--VNDIMSSKGWHLNP---LQ---RPNSIHICVTLQHVAVV 488 (541)
Q Consensus 430 ~~~~~v~~~~~~~~v~f-~~~------------~~~~~~--l~~~l~~~G~~~~~---~~---~~~~iRi~~~~~~~e~i 488 (541)
+|++++.. |..+++.| ++. +.+..+ +.+.|.++|+.+.. ++ .++++|+++. .+.+++
T Consensus 402 ~~g~~~~~-p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~-~~~e~l 479 (498)
T 3ihj_A 402 VPGIHCNP-LQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL-PPVEKL 479 (498)
T ss_dssp STTEECCC-CCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC-SCHHHH
T ss_pred CCCcEecC-CCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC-CCHHHH
Confidence 99998764 44444444 332 223344 35566778976543 22 2358999996 456999
Q ss_pred HHHHHHHHHHHHHHHc
Q 009181 489 DVFLRDLRESVETVKQ 504 (541)
Q Consensus 489 d~~i~~L~~~~~~l~~ 504 (541)
++++++|+++++++++
T Consensus 480 ~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 480 KTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 141
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.91 E-value=6e-23 Score=207.90 Aligned_cols=275 Identities=17% Similarity=0.141 Sum_probs=190.3
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH----hhcCCeE
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNIKL 250 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~----~~~G~~v 250 (541)
++++.+++++|.+ .. +++++||+|+..+++++. ++| ++|+++.+.|+++...+ +..|+++
T Consensus 2 ~l~~~la~~~g~~-~~-------i~~~sG~~a~~~~~~~~~-----~~g---~~v~~~~~~~~~~~~~~~~~~~~~g~~~ 65 (331)
T 1pff_A 2 ALEGKIAKLEHAE-AC-------AATASGMGAIAASVWTFL-----KAG---DHLISDDCLYGCTHALFEHQLRKFGVEV 65 (331)
T ss_dssp HHHHHHHHHHTCS-EE-------EEESSHHHHHHHHHHHHC-----CTT---CEEEEESCCCHHHHHHHHTHHHHTTCEE
T ss_pred hHHHHHHHHhCCC-eE-------EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCCcchHHHHHHHHHHhcCCEE
Confidence 4667899999987 32 455555999999999874 256 89999999999987765 4579999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHH-cCCEEEEeCCcccchhhhhhhcCCCCCC
Q 009181 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS-HGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (541)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~-~~i~lhvD~a~gg~~~~f~~~~g~~~p~ 329 (541)
+.++. .|++++++++++++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++|+.+... . +
T Consensus 66 ~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~--------~-~ 131 (331)
T 1pff_A 66 DFIDM-----AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT--------N-P 131 (331)
T ss_dssp EEECT-----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC--------C-G
T ss_pred EEeCC-----CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccC--------C-h
Confidence 99987 48999999999999999999999999999999999999999 99999999999866541 1 1
Q ss_pred CCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHH
Q 009181 330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (541)
Q Consensus 330 ~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~ 407 (541)
+ ..++|+++.++||++.+|.+ +|+++.+++++..........|. |... ...++++++..+ +
T Consensus 132 ~---~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~----------~~~~--~~~~~~~~~~~l--~ 194 (331)
T 1pff_A 132 L---DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDIT----------GAII--SPHDAWLITRGT--L 194 (331)
T ss_dssp G---GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCC----------CCCC--CHHHHHHHHHHH--H
T ss_pred h---hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhc----------CCCC--CHHHHHHHHcCc--c
Confidence 2 24689999999999767766 78776665344332211111100 0011 122455543333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--------------CCCeEEecC---CCeeEEEEecCCCCHHHHHHHHHhCCceeccC
Q 009181 408 GYLENTKAIMEVSESIQKGIKE--------------IPELFIIGR---PDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPL 470 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~--------------~~~~~v~~~---~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~ 470 (541)
.+....++..++++.+.+.|++ +|++++..+ ...++++|... +..++.+.|.++|+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~~~ 272 (331)
T 1pff_A 195 TLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHVVSLAV 272 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSSSEECS
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCCceecc
Confidence 2333333444444444444433 234433322 13578888876 5678888899999743211
Q ss_pred ----------------------------CC-CCeEEEEecCCCH-HHHHHHHHHHHHH
Q 009181 471 ----------------------------QR-PNSIHICVTLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 471 ----------------------------~~-~~~iRi~~~~~~~-e~id~~i~~L~~~ 498 (541)
+. ++.+|+|++..++ ++++++++.|+++
T Consensus 273 s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 273 SLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 12 4799999998888 8999998888754
No 142
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.91 E-value=3.9e-23 Score=218.03 Aligned_cols=308 Identities=14% Similarity=0.136 Sum_probs=211.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCC------------
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP------------ 227 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~------------ 227 (541)
.|....+..++++++.+++.+.+|.+ +++ + ++|+|+|+|+.++++++.. +| +
T Consensus 78 ~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~----i--~~t~G~t~al~~~~~~l~~-----~g---d~~~~~~~~~~g~ 143 (444)
T 3if2_A 78 NYSNPQGDSAFIDALVGFFNRHYDWNLTSEN----I--ALTNGSQNAFFYLFNLFGG-----AF---VNEHSQDKESKSV 143 (444)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG----E--EEESSHHHHHHHHHHHSSE-----EE---ECC-------CEE
T ss_pred ccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH----E--EEecCcHHHHHHHHHHHhC-----CC---ccccccccccccc
Confidence 44445567788888888888877754 443 6 9999999999999998753 44 4
Q ss_pred --eEEec-CCccchHHHHH------hhcCCeEEEeeCCC-C----CccCHHHHHHh---hccCceEEEeecCCCCCcccc
Q 009181 228 --EMIIP-VSAHSAYDKAA------QYFNIKLWRVPVDK-E----FRADVKAIKKY---INRNTVLIVGSAPGFPHGIID 290 (541)
Q Consensus 228 --~vi~~-~~~h~s~~ka~------~~~G~~v~~v~~~~-~----~~~d~~~Le~~---i~~~t~~vv~~~~~~~~G~id 290 (541)
+|+++ .+.|+.+..++ ...|..+..+++++ + +.+|+++|+++ +++++++|++++|+||+|.+.
T Consensus 144 ~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~ 223 (444)
T 3if2_A 144 DKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL 223 (444)
T ss_dssp EEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC
T ss_pred cceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC
Confidence 67776 78888877643 34577888888875 3 47999999998 678899999999999999999
Q ss_pred C---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccc
Q 009181 291 P---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH 367 (541)
Q Consensus 291 ~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~ 367 (541)
| +++|+++|++||+++|+|++|+.+... ..+ . .......+.++++.++||++.++.++|+++. ++++...
T Consensus 224 ~~~~l~~i~~~a~~~~~~li~De~~~~~~~~----~~~-~-~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~-~~~l~~~ 296 (444)
T 3if2_A 224 TDEEMAHLAEIAKRYDIPLIIDNAYGMPFPN----IIY-S-DAHLNWDNNTILCFSLSKIGLPGMRTGIIVA-DAKVIEA 296 (444)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTCTTTTC----CBC-S-CCCCCCCTTEEEEEESTTTTCGGGCCEEEEC-CHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCcccc----ccc-c-cccccCCCCEEEEechhhccCCCCceEEEEE-CHHHHHH
Confidence 8 889999999999999999999754321 000 0 1111235678889999998666677897554 4444332
Q ss_pred ccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHH----HHH-HHHHHHHHHHHHHHHhhc-CC--CeEEecCC
Q 009181 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG----YLE-NTKAIMEVSESIQKGIKE-IP--ELFIIGRP 439 (541)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g----~~~-~~~~~~~~a~~l~~~L~~-~~--~~~v~~~~ 439 (541)
.......+. .+.... ++.++...+.... ..+ ..++..++++++.+.|.+ ++ ++++..+.
T Consensus 297 ~~~~~~~~~-----------~~~~~~--~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 363 (444)
T 3if2_A 297 VSAMNAVVN-----------LAPTRF--GAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE 363 (444)
T ss_dssp HHHHHHHHH-----------SSCCCH--HHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC
T ss_pred HHHHHHhcc-----------CCCChH--HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC
Confidence 211111100 011111 3333333332211 222 445556666777777665 44 46766665
Q ss_pred CeeEEEEecCC--CCHHHHHHHHHhCCceecc---C--C--------CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 440 DMTIVAFGSDV--VDIFEVNDIMSSKGWHLNP---L--Q--------RPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 440 ~~~~v~f~~~~--~~~~~l~~~l~~~G~~~~~---~--~--------~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
...++++.++. .+..++.+.|.++|+.+.. + + .++++|++++. +.+++++++++|+++++++.+
T Consensus 364 ~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 364 GAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp BSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHHc
Confidence 56677777664 4788999999999976543 1 1 12589999997 779999999999999988765
No 143
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.91 E-value=1.2e-22 Score=213.85 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH----HhhcCC
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFNI 248 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka----~~~~G~ 248 (541)
..++++.+++++|.+ .. +++++|++|+.++++++.. +| ++|+++.+.|.++... ++.+|+
T Consensus 116 ~~~l~~~lA~l~g~~-~~-------v~~~sG~~Ai~~al~~l~~-----~G---d~Vi~~~~~y~~~~~~~~~~~~~~G~ 179 (445)
T 1qgn_A 116 TVVLEEKISALEGAE-ST-------LLMASGMCASTVMLLALVP-----AG---GHIVTTTDCYRKTRIFIETILPKMGI 179 (445)
T ss_dssp HHHHHHHHHHHHTCS-EE-------EEESCHHHHHHHHHHHHSC-----SS---CEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred HHHHHHHHHHHhCCC-cE-------EEeCCHHHHHHHHHHHHhC-----CC---CEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 344666889999986 32 4555556999999997642 56 8999999999986663 567899
Q ss_pred eEEEeeCCCCCccCHHHHHHhhccCc-eEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCC
Q 009181 249 KLWRVPVDKEFRADVKAIKKYINRNT-VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI 327 (541)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~i~~~t-~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~ 327 (541)
+++.++.+ |+++|+++|+++| ++|++++|+||+|.+.|+++|+++|++||+++|+|++|+.+..
T Consensus 180 ~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~---------- 244 (445)
T 1qgn_A 180 TATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN---------- 244 (445)
T ss_dssp EEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT----------
T ss_pred EEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc----------
Confidence 99999875 8999999999999 9999999999999999999999999999999999999975432
Q ss_pred CCCCcCCCCceEEEeCCCCCCCCCCC---ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHH
Q 009181 328 PPFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL 404 (541)
Q Consensus 328 p~~~~~~~gvdsis~~~hK~~~~p~g---~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~l 404 (541)
.+....|+|+++.++||+ ++|.| +|+++.++ ++.......... .|.... ...+|.+++.+
T Consensus 245 --~~~~~~g~Div~~S~sK~-~gg~gd~~~G~l~~~~-~l~~~l~~~~~~-----------~g~~~~--~~~a~~~~~~l 307 (445)
T 1qgn_A 245 --QKALALGADLVLHSATKF-LGGHNDVLAGCISGPL-KLVSEIRNLHHI-----------LGGALN--PNAAYLIIRGM 307 (445)
T ss_dssp --CCTTTTTCSEEEECTTTT-TTCSSSCCCEEEEECH-HHHHHHHHHHHH-----------HCCCCC--HHHHHHHHHHG
T ss_pred --CCccccCCEEEEECCccc-ccccccceEEEEEECH-HHHHHHHHHHHH-----------hCCCCC--HHHHHHHHHhH
Confidence 111235789999999999 56666 88766544 333221110000 111111 22456655433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCe-EEecCC----------------CeeEEEEecCCC--CHHHHHHHHHhCCc
Q 009181 405 GQEGYLENTKAIMEVSESIQKGIKEIPEL-FIIGRP----------------DMTIVAFGSDVV--DIFEVNDIMSSKGW 465 (541)
Q Consensus 405 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~v~~~~----------------~~~~v~f~~~~~--~~~~l~~~l~~~G~ 465 (541)
+.+....++..++++++.+.|++.|++ ++..+. ..++++|.+++. +..++.+.|...++
T Consensus 308 --~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i 385 (445)
T 1qgn_A 308 --KTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYI 385 (445)
T ss_dssp --GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceE
Confidence 445666777888899999999999888 454431 467899998753 24455555542221
Q ss_pred ------eec-------------------cCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 466 ------HLN-------------------PLQR-PNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 466 ------~~~-------------------~~~~-~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
..+ ..+. ++.+|+|++. ||+|+++++|+++++.
T Consensus 386 ~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~---Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 386 APSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV---EDFDDLKADILQALDS 444 (445)
T ss_dssp CSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred eccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 100 1233 3789999995 6899999999998864
No 144
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.91 E-value=3.8e-22 Score=206.69 Aligned_cols=276 Identities=16% Similarity=0.120 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH----HHhhcCCe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNIK 249 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k----a~~~~G~~ 249 (541)
.++++.+++++|.+ .. + ++++ |++|+..+++++. ++| ++|+++.+.|+++.. .++..|++
T Consensus 55 ~~l~~~la~~~~~~-~~----i--~~~s-Gt~a~~~~~~~~~-----~~g---~~vl~~~~~~~~~~~~~~~~~~~~g~~ 118 (386)
T 1cs1_A 55 DVVQRALAELEGGA-GA----V--LTNT-GMSAIHLVTTVFL-----KPG---DLLVAPHDCYGGSYRLFDSLAKRGCYR 118 (386)
T ss_dssp HHHHHHHHHHHTCS-EE----E--EESS-HHHHHHHHHHHHC-----CTT---CEEEEETTCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHhCCC-cE----E--EeCC-HHHHHHHHHHHHh-----CCC---CEEEEecCCcHhHHHHHHHHHHhcCCE
Confidence 34566888888887 32 3 5554 5999999999873 255 899999999998544 34777999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCC
Q 009181 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (541)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~ 329 (541)
++.++.+ |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+++... . +
T Consensus 119 ~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~--------~-~ 184 (386)
T 1cs1_A 119 VLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ--------N-P 184 (386)
T ss_dssp EEEECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC--------C-G
T ss_pred EEEeCCC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC--------C-c
Confidence 9999875 899999999999999999999999999999999999999999999999999877542 1 1
Q ss_pred CCcCCCCceEEEeCCCCCCCCCCCc--eEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHH
Q 009181 330 FDFSVQGVTSISVDVHKYGLAPKGT--SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (541)
Q Consensus 330 ~~~~~~gvdsis~~~hK~~~~p~g~--g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~ 407 (541)
+ ..++|+++.++||++.+|.+. |+++.+++++..........|.+ .....++++++..+ +
T Consensus 185 ~---~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~-------------~~~~~~~~~~~~~l--~ 246 (386)
T 1cs1_A 185 L---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV-------------TGGAFDSYLLLRGL--R 246 (386)
T ss_dssp G---GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTC-------------BCCHHHHHHHHHHH--T
T ss_pred c---ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCC-------------CCCHHHHHHHHhcc--c
Confidence 2 246799999999997667663 87777654443322111111110 01133555554333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEec-C----------------CCeeEEEEecCCCCHHHHHHHHHhCCceecc-
Q 009181 408 GYLENTKAIMEVSESIQKGIKEIPELFIIG-R----------------PDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP- 469 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~-~----------------~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~- 469 (541)
.+.+..++..++++++.+.|++++.+.-.. + ...++++|.+.+. ..++.+.|.++|+.+..
T Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~ 325 (386)
T 1cs1_A 247 TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAE 325 (386)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEcc
Confidence 456667777888889999988877765432 1 1267888887653 66788888888976542
Q ss_pred -CC--------------------------C-CCeEEEEecCCCH-HHHHHHHHHHHHH
Q 009181 470 -LQ--------------------------R-PNSIHICVTLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 470 -~~--------------------------~-~~~iRi~~~~~~~-e~id~~i~~L~~~ 498 (541)
.+ . ++.+|+|++..++ ++++++.+.|+++
T Consensus 326 ~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 326 SLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp CCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 22 1 4799999998666 6666666666554
No 145
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.91 E-value=2.7e-22 Score=208.84 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH----hhcCC
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNI 248 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~----~~~G~ 248 (541)
..++++.+++++|.+ .. +++++|++|+..+++++.. +| ++|+++.+.|+++...+ ...|+
T Consensus 67 ~~~l~~~la~~~g~~-~~-------i~~~sG~~a~~~~l~~~~~-----~g---d~vl~~~~~~~~~~~~~~~~~~~~g~ 130 (398)
T 1gc0_A 67 LNLLEARMASLEGGE-AG-------LALASGMGAITSTLWTLLR-----PG---DEVLLGNTLYGCTFAFLHHGIGEFGV 130 (398)
T ss_dssp HHHHHHHHHHHHTCS-EE-------EEESSHHHHHHHHHHHHCC-----TT---CEEEEESSCCSHHHHHHHHTGGGGTC
T ss_pred HHHHHHHHHHHhCCC-cE-------EEECCHHHHHHHHHHHHhc-----CC---CEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 445666888999886 32 5666678999999998742 55 89999999999987765 67799
Q ss_pred eEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
+++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|++||+++|+|++|+.+... .
T Consensus 131 ~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~--------~- 196 (398)
T 1gc0_A 131 KLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQ--------R- 196 (398)
T ss_dssp EEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHC--------C-
T ss_pred EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccC--------C-
Confidence 99999875 899999999999999999999999999999999999999999999999999876542 1
Q ss_pred CCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhH
Q 009181 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (541)
Q Consensus 329 ~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~ 406 (541)
++ ..++|+++.++||++.+|.+ +|+++.+++.+..........+.++ .. ....+|+++..+
T Consensus 197 ~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~l-- 259 (398)
T 1gc0_A 197 PL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA----------VL--SPHDAALLMRGI-- 259 (398)
T ss_dssp GG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC----------CC--CHHHHHHHHHHH--
T ss_pred ch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC----------CC--CHHHHHHHHhcc--
Confidence 12 24689999999999666665 5876665443221111001110111 01 133566665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeE--------------EecC---CCeeEEEEecCCCCHHHHHHHHHhCCceecc
Q 009181 407 EGYLENTKAIMEVSESIQKGIKEIPELF--------------IIGR---PDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP 469 (541)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~--------------v~~~---~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~ 469 (541)
+.+....++..++++++.+.|++.++++ +..+ ...++++|.+.+ +..+..+.+.+.|+....
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~~i~~~~ 338 (398)
T 1gc0_A 260 KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-GIGAGRRFMNALQLFSRA 338 (398)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-HHHHHHHHHHHCSSSEEC
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-CHHHHHHHHHhCCCceec
Confidence 3456667777778888888887765543 2222 246788888754 233455666666643211
Q ss_pred ----------------------------CCC-CCeEEEEecCCCH-HHHHHHHHHHHHH
Q 009181 470 ----------------------------LQR-PNSIHICVTLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 470 ----------------------------~~~-~~~iRi~~~~~~~-e~id~~i~~L~~~ 498 (541)
.+. ++.+|+|++..++ ++++.+.+.|+++
T Consensus 339 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 011 3789999998877 7888888877754
No 146
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.91 E-value=1.8e-22 Score=211.76 Aligned_cols=311 Identities=14% Similarity=0.061 Sum_probs=210.5
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHH--HHHHHHHHHHHHhhcCC------CCCeEEecC
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESI--LLAVKSSRDYMRNKRGI------TRPEMIIPV 233 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~--~~al~a~r~~~~~~~Gi------~~~~vi~~~ 233 (541)
+|....+..+ +++.++++++.++++ + ++|+|+++++ .+++.++.... .+|- +.++|+++.
T Consensus 71 ~Y~~~~G~~~----lr~~ia~~~~~~~~~----i--~~t~G~~~al~l~~~~~~l~~~~--~~g~~~~~~~d~~~Vl~~~ 138 (422)
T 3d6k_A 71 NYGGLLGIAD----IRELWAEALGLPADL----V--VAQDGSSLNIMFDLISWSYTWGN--NDSSRPWSAEEKVKWLCPV 138 (422)
T ss_dssp SSCCSSCCHH----HHHHHHHHHTCCGGG----E--EECSSCHHHHHHHHHHHHHHHCC--TTCSSCGGGSSCCEEEEEE
T ss_pred CCCCCCCCHH----HHHHHHHHhCCChhH----E--EEecchHHHHHHHHHHHHhcCcc--cccccccccCCCCEEEEeC
Confidence 3433444444 444777777888765 6 8999999997 45556654300 0010 125799999
Q ss_pred CccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhcc-CceEEE-eecCCCCCccccCHH---HHHHHHH-HcCCEEE
Q 009181 234 SAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIV-GSAPGFPHGIIDPIQ---ELGELAL-SHGTCLH 307 (541)
Q Consensus 234 ~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv-~~~~~~~~G~id~i~---~I~~la~-~~~i~lh 307 (541)
++|+.+..+++..|++++.+|+++++ +|+++|++++++ ++++|+ .++|+||||.+.+.+ +|+++|+ +||++++
T Consensus 139 p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li 217 (422)
T 3d6k_A 139 PGYDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIV 217 (422)
T ss_dssp SCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEE
T ss_pred CccHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEE
Confidence 99999999999999999999998765 999999999986 788877 789999999998876 7888887 9999999
Q ss_pred EeCCccc--chhhhhhhcCCCCCCC-C----cCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCcc
Q 009181 308 VDLCLGG--FVLPFAKKLGYPIPPF-D----FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY 380 (541)
Q Consensus 308 vD~a~gg--~~~~f~~~~g~~~p~~-~----~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~ 380 (541)
+|++|+. +.. .+...+++ + ....+.+++..+++|++.++.++|+++.+ +++..........+..
T Consensus 218 ~De~y~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~-~~l~~~l~~~~~~~~~--- 288 (422)
T 3d6k_A 218 WDNAYALHTLSD-----EFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASS-KENIEWYASHANVRGI--- 288 (422)
T ss_dssp EECTTTTCBSSS-----CCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECC-HHHHHHHHHHHHHHCS---
T ss_pred EECCccccccCC-----CCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeC-HHHHHHHHHHHHhhcC---
Confidence 9999973 321 01101111 1 12345678888899995555679986654 4443322111111100
Q ss_pred CCCcccCCCCCchHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEecCCC
Q 009181 381 VSPTVAGSRPGGLIAGAWAALMSLGQ-----EGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGSDVV 451 (541)
Q Consensus 381 ~~~~~~gsr~~~~~a~~~~al~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~~~~ 451 (541)
+....++.++...+.. +.+++..+.+.+.++++.+.|.+ .+++++..+....++++.+++.
T Consensus 289 ----------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~ 358 (422)
T 3d6k_A 289 ----------GPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG 358 (422)
T ss_dssp ----------CCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT
T ss_pred ----------CCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC
Confidence 0113355555555543 33455555566666777666654 3346766555666777777654
Q ss_pred CHHHHHHHHHhCCceecc----CC-----CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 452 DIFEVNDIMSSKGWHLNP----LQ-----RPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 452 ~~~~l~~~l~~~G~~~~~----~~-----~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
+..++.+.|.++|+.+.. +. .++++|+|++..+.+++++++++|+++++++..
T Consensus 359 ~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 359 TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 677888899999987654 21 247899999874569999999999999987754
No 147
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.91 E-value=5.3e-23 Score=214.90 Aligned_cols=323 Identities=13% Similarity=0.092 Sum_probs=214.7
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC
Q 009181 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~ 225 (541)
..+.+++.........+|...++..++.+++.+++.+..+.+..+ ++ ++|+||++|+..+++++.+ +|
T Consensus 58 ~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~---~i--~~t~g~~~al~~~~~~~~~-----~g-- 125 (413)
T 3t18_A 58 PSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYI---SA--IATPGGTGAIRSAIFSYLD-----EG-- 125 (413)
T ss_dssp HHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEE---EE--EEESHHHHHHHHHHHHHCC-----SS--
T ss_pred HHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccC---cE--EEcCccHHHHHHHHHHhcC-----CC--
Confidence 344555554332222344445566777777777776665543221 25 8999999999999998753 66
Q ss_pred CCeEEecCCccchHHHHHhhcCCeEEEeeC-CCCCccCHHHHHHhhcc----Cce-EEEeecC-CCCCccccCHHH---H
Q 009181 226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DKEFRADVKAIKKYINR----NTV-LIVGSAP-GFPHGIIDPIQE---L 295 (541)
Q Consensus 226 ~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~-~~~~~~d~~~Le~~i~~----~t~-~vv~~~~-~~~~G~id~i~~---I 295 (541)
++|+++.+.|+++...++..|++++.+|+ ++++.+|+++|++++++ ++. ++++++| +||+|.+.|.++ |
T Consensus 126 -d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l 204 (413)
T 3t18_A 126 -DPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEV 204 (413)
T ss_dssp -CEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred -CEEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 89999999999999999999999999998 45679999999999986 676 8888899 999999988665 4
Q ss_pred HHHHH------HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCC----C-ceEEEeCCCCCCCCCCC--ceEEEEe--
Q 009181 296 GELAL------SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ----G-VTSISVDVHKYGLAPKG--TSVVLYR-- 360 (541)
Q Consensus 296 ~~la~------~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~----g-vdsis~~~hK~~~~p~g--~g~ll~~-- 360 (541)
+++|+ +||+++++|++|+++... |...+.+-.... . +.++..+++|. +++.| +|+++..
T Consensus 205 ~~~~~~~~~~~~~~~~li~De~y~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~~G~riG~~~~~~~ 278 (413)
T 3t18_A 205 ITFLKEKAEDKDKKITLIVDVAYLEFAGD-----GDQQRKFFEKFSNLPRNLFVVVAFSMSKS-HTAYGLRSGAAVGISS 278 (413)
T ss_dssp HHHHHHHTTSTTCEEEEEEECTTGGGSSS-----SSTTTGGGGGGTTCCTTEEEEEEEEHHHH-TTCGGGCCEEEEEEES
T ss_pred HHHHHHHhhccCCcEEEEEecccccccCC-----hhhHHHHHHHHhhcCCCeeEEEEEecCcc-CCCcCcCcEEEEEecC
Confidence 55555 899999999999876531 110111111111 1 13667789999 45444 7987763
Q ss_pred cccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHhhcCCCe
Q 009181 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE-------GYLENTKAIMEVSESIQKGIKEIPEL 433 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~-------g~~~~~~~~~~~a~~l~~~L~~~~~~ 433 (541)
++++............ .+.-.....+++.++...+... ..++..++..++++++.+.|+++ ++
T Consensus 279 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 348 (413)
T 3t18_A 279 SKEIIEEFEASLAHSA---------RCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKEN-KL 348 (413)
T ss_dssp CHHHHHHHHHHHHHHH---------HHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred CHHHHHHHHHHHHHhh---------hccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 4544332211100000 0000001133555554444332 34456677888889999999988 88
Q ss_pred EEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 434 FIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 434 ~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
++..+....++++.. .+..++.+.|.++|+.+... ++++|++++..+++++ +++|+++++++++
T Consensus 349 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gv~v~~g--~~~iRis~~~~~~~~~---l~~l~~~l~~~~~ 412 (413)
T 3t18_A 349 TMIPYFGGFFTFIPT--DKAFDIVKDLEKENIFTIPS--AKGIRVAICGVGEEKI---PKLVQRLAFYTNK 412 (413)
T ss_dssp CCBCCCSSSCEEEEC--SCHHHHHHHHHHTTEECEEC--SSEEEECTTTSCGGGH---HHHHHHHHHHHHC
T ss_pred CccCCCceEEEEeCC--CCHHHHHHHHHhCCEEEecC--CCceEEEEeeCCHHHH---HHHHHHHHHHHhc
Confidence 776544434444444 36788999999999877653 5789999986666555 7888888877653
No 148
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.90 E-value=2e-22 Score=210.78 Aligned_cols=275 Identities=18% Similarity=0.182 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhh----cCC
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY----FNI 248 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~----~G~ 248 (541)
..++++++++++|.+. + ++++||++|+..+++++.. +| ++|+++.+.|.++...++. +|+
T Consensus 83 ~~~l~~~la~~~g~~~------~--~~~~sG~~Ai~~al~~l~~-----~G---d~Vi~~~~~y~~~~~~~~~~~~~~g~ 146 (414)
T 3ndn_A 83 VSVFEERLRLIEGAPA------A--FATASGMAAVFTSLGALLG-----AG---DRLVAARSLFGSCFVVCSEILPRWGV 146 (414)
T ss_dssp HHHHHHHHHHHHTCSE------E--EEESSHHHHHHHHHHTTCC-----TT---CEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred HHHHHHHHHHHHCCCc------E--EEECCHHHHHHHHHHHHhC-----CC---CEEEEcCCccchHHHHHHHHHHHcCc
Confidence 3446668899998742 3 8899999999999988742 66 8999999999997777654 899
Q ss_pred eEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
+++.+|.+ |+++|+++++++|++|++++|+||+|.+.|+++|+++|++||+++++|++|+.+... .
T Consensus 147 ~~~~v~~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~--------~- 212 (414)
T 3ndn_A 147 QTVFVDGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQ--------Q- 212 (414)
T ss_dssp EEEEECTT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC--------C-
T ss_pred EEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccC--------C-
Confidence 99999986 899999999999999999999999999999999999999999999999999854331 1
Q ss_pred CCCcCCCCceEEEeCCCCCCCCCCC---ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh
Q 009181 329 PFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (541)
Q Consensus 329 ~~~~~~~gvdsis~~~hK~~~~p~g---~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg 405 (541)
++ ..|+|+++.+++|+ +++.| +|+++.+++.+..........+ |.... ...+|++++ +
T Consensus 213 ~~---~~g~div~~S~sK~-l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~-----------g~~~~--~~~a~~~~~--~ 273 (414)
T 3ndn_A 213 GF---PLGVDVVVYSGTKH-IDGQGRVLGGAILGDREYIDGPVQKLMRHT-----------GPAMS--AFNAWVLLK--G 273 (414)
T ss_dssp CG---GGTCSEEEEETTTT-TTCSSCCCCEEEEECHHHHTTHHHHHHHHH-----------CCCCC--HHHHHHHHH--H
T ss_pred ch---hcCCCeEeccCCcc-ccCCCCceEEEEEECHHHHHHHHHHHHHHc-----------CCCCC--HHHHHHHHH--H
Confidence 12 35679999999999 56655 6876665443321111011111 11122 235666664 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-----------------CeeEEEEecCCC------CHHHHHHHHHh
Q 009181 406 QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-----------------DMTIVAFGSDVV------DIFEVNDIMSS 462 (541)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~f~~~~~------~~~~l~~~l~~ 462 (541)
.+.+....++..++++++.+.|++.|++..+..| ...+++|.+++. +..++.+.|..
T Consensus 274 l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~ 353 (414)
T 3ndn_A 274 LETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRL 353 (414)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCcc
Confidence 4556778888899999999999999888655333 256889988652 24455555554
Q ss_pred CCceec--c-----------------------CC-CCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 463 KGWHLN--P-----------------------LQ-RPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 463 ~G~~~~--~-----------------------~~-~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
.+...+ . .+ .++.+|+|++. |+++.++++|++++
T Consensus 354 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 354 IDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp SEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred ceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 431110 0 11 24789999997 56677777777765
No 149
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.90 E-value=6.2e-23 Score=208.37 Aligned_cols=269 Identities=16% Similarity=0.161 Sum_probs=200.4
Q ss_pred HHHHHHHHHHhC---CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeE
Q 009181 174 AEVIAMTAALLG---NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (541)
Q Consensus 174 ~ev~~~la~l~g---~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v 250 (541)
.++++.++++++ .++++ + ++|+|+++++..+++++ | ++|+++ ++|+++...++..|+++
T Consensus 59 ~~lr~~la~~~~~~~~~~~~----v--~~~~G~~~al~~~~~~~--------g---d~Vl~~-p~y~~~~~~~~~~g~~~ 120 (335)
T 1uu1_A 59 EELIEKILSYLDTDFLSKNN----V--SVGNGADEIIYVMMLMF--------D---RSVFFP-PTYSCYRIFAKAVGAKF 120 (335)
T ss_dssp HHHHHHHHHHHTCSSCCGGG----E--EEESSHHHHHHHHHHHS--------S---EEEECS-SSCHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHcCCCCCCHHH----E--EEcCChHHHHHHHHHHh--------C---CcEEEC-CCcHHHHHHHHHcCCeE
Confidence 346668888888 66654 6 99999999999999886 3 789999 99999999999999999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCC
Q 009181 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (541)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~ 330 (541)
+.+|+++++.+|+++| +++++|++++|+||+|.+.|.+++.++++.+| ++++|++|+.+.. . +..
T Consensus 121 ~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~---~------~~~ 185 (335)
T 1uu1_A 121 LEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHG---E------SYV 185 (335)
T ss_dssp EECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHC---C------CCG
T ss_pred EEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcc---h------hHH
Confidence 9999987888898877 57899999999999999999999999999999 9999999986532 0 111
Q ss_pred C-cCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh-H
Q 009181 331 D-FSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-Q 406 (541)
Q Consensus 331 ~-~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg-~ 406 (541)
+ ....+.+++..+++|+ +++.| +|+++. ++++..........| +....+++++...+. .
T Consensus 186 ~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~-~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~l~~~ 248 (335)
T 1uu1_A 186 DFLKKYENLAVIRTFSKA-FSLAAQRVGYVVA-SEKFIDAYNRVRLPF---------------NVSYVSQMFAKVALDHR 248 (335)
T ss_dssp GGGGTCSSEEEEEESTTT-TTCGGGCCEEEEE-CHHHHHHHHHHSCTT---------------CSCHHHHHHHHHHHHTH
T ss_pred HHhhhCCCEEEEecchhh-cCCcccCeEEEEe-CHHHHHHHHHhcCCC---------------CcCHHHHHHHHHHhCCH
Confidence 2 1234567888899999 45445 798777 444433221111111 111224444444443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHH
Q 009181 407 EGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVA 486 (541)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e 486 (541)
+.+++..++..++++++.+.|++. ++++. ++..+++++..++.+..++.+.|.++|+.+.. .++++|+|++. .+
T Consensus 249 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~--~~~~iRis~~~--~~ 322 (335)
T 1uu1_A 249 EIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKEEKERLLEHLRTKNVAVRS--FREGVRITIGK--RE 322 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCTHHHHHHHHHHHHHTEEEEE--ETTEEEEECCC--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE--CCCeEEEEeCC--HH
Confidence 467888899999999999999987 67654 45566777776543566788999999987765 35789999863 57
Q ss_pred HHHHHHHHHHHH
Q 009181 487 VVDVFLRDLRES 498 (541)
Q Consensus 487 ~id~~i~~L~~~ 498 (541)
++++++++|+++
T Consensus 323 ~i~~~~~~l~~~ 334 (335)
T 1uu1_A 323 ENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhh
Confidence 899999988754
No 150
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.90 E-value=1.1e-22 Score=212.41 Aligned_cols=325 Identities=12% Similarity=0.098 Sum_probs=214.3
Q ss_pred HHHHHHHHhhcccCC-----CCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHH
Q 009181 146 SLINEACSMFAHTNP-----LHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYM 218 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~-----~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~ 218 (541)
+.+.+++...+..+. ++|...++..++++.+.+++.+.+|.+ +++ + ++|+|+|+|+.++++++..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~t~al~~~~~~l~~-- 120 (417)
T 3g7q_A 49 DYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQN----I--ALTNGSQSAFFYLFNLFAG-- 120 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGG----E--EEESCHHHHHHHHHHHHSB--
T ss_pred HHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCccc----E--EEeCCcHHHHHHHHHHHcC--
Confidence 555555554443221 245556677788888888888877754 443 6 9999999999999999853
Q ss_pred HhhcCC--CCCeEEec-CCccchHHHHHhhc------CCeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCcc
Q 009181 219 RNKRGI--TRPEMIIP-VSAHSAYDKAAQYF------NIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGI 288 (541)
Q Consensus 219 ~~~~Gi--~~~~vi~~-~~~h~s~~ka~~~~------G~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~ 288 (541)
+|- ...+|+++ .+.|+.+...+... +..+..++.+. ++.+|+++|+ +++++++|++++|+||+|.
T Consensus 121 ---~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~ 195 (417)
T 3g7q_A 121 ---RRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGN 195 (417)
T ss_dssp ---C----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCC
T ss_pred ---CCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCC
Confidence 440 01189987 88898887665322 33555555442 5678999998 7888999999999999999
Q ss_pred ccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccc
Q 009181 289 IDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR 365 (541)
Q Consensus 289 id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~ 365 (541)
+.| +++|+++|++||+++|+|++|+.+... .... .......+.+++..+++|++.++.++|+++. ++++.
T Consensus 196 ~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~-~~~~-----~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~-~~~~~ 268 (417)
T 3g7q_A 196 VITDEELMKLDRLANQHNIPLVIDNAYGVPFPG-IIFS-----EARPLWNPNIILCMSLSKLGLPGSRCGIIIA-NDKTI 268 (417)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTC-CBCS-----CCCCCCCTTEEEEEESGGGTCTTSCCEEEEC-CHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEeCCCcccccc-cccc-----ccccCCCCCEEEEEechhccCCCcceEEEEe-CHHHH
Confidence 988 889999999999999999999754311 0000 1111234668888899998666667897554 44443
Q ss_pred ccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHH----HHH-HHHHHHHHHHHHHHHhhc-CC--CeEEec
Q 009181 366 KHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG----YLE-NTKAIMEVSESIQKGIKE-IP--ELFIIG 437 (541)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g----~~~-~~~~~~~~a~~l~~~L~~-~~--~~~v~~ 437 (541)
.........+.. ... ..++.++...+.... ..+ +.+++.++++++.+.|++ ++ ++++..
T Consensus 269 ~~~~~~~~~~~~-----------~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 335 (417)
T 3g7q_A 269 TAIANMNGIISL-----------APG--GMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK 335 (417)
T ss_dssp HHHHHHHHHHCC-----------CCC--SHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEEC
T ss_pred HHHHHhhcceee-----------CCC--cHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeC
Confidence 322111111110 011 113333333332211 222 455566777777777776 55 477776
Q ss_pred CCCeeEEEEecCC--CCHHHHHHHHHhCCceecc---CCC---------CCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 438 RPDMTIVAFGSDV--VDIFEVNDIMSSKGWHLNP---LQR---------PNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 438 ~~~~~~v~f~~~~--~~~~~l~~~l~~~G~~~~~---~~~---------~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+....++++.++. .+..++.+.|.++|+.+.. +.. ++++|+|++. +.+++++++++|+++++++.
T Consensus 336 ~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 336 PEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIERAW 414 (417)
T ss_dssp CCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC-CHHHHHHHHHHHHHHHHHHH
Confidence 6666777777764 4788999999999976543 111 4689999986 67999999999999998775
Q ss_pred c
Q 009181 504 Q 504 (541)
Q Consensus 504 ~ 504 (541)
+
T Consensus 415 ~ 415 (417)
T 3g7q_A 415 R 415 (417)
T ss_dssp H
T ss_pred h
Confidence 4
No 151
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.90 E-value=1.3e-22 Score=207.15 Aligned_cols=278 Identities=15% Similarity=0.142 Sum_probs=203.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEee
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~ 254 (541)
++++++++++|.++++ + ++|+|+|+++.++++++. | ++|+++.++|+++..+++..|++++.+|
T Consensus 54 ~lr~~la~~~~~~~~~----i--~~t~g~~~al~~~~~~l~-------g---d~Vi~~~p~~~~~~~~~~~~g~~~~~v~ 117 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNNA----I--LVTNGPTAAFYQIAQAFR-------G---SRSLIAIPSFAEYEDACRMYEHEVCFYP 117 (350)
T ss_dssp HHHHHHHHHTTCCGGG----E--EEESHHHHHHHHHHHHTT-------T---CEEEEEESCCHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCcCHHH----E--EEcCCHHHHHHHHHHHHC-------C---CEEEEeCCCcHHHHHHHHHcCCeEEEEe
Confidence 4677999999988765 6 899999999999999874 4 8999999999999999999999999999
Q ss_pred C-CCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcC-CEEEEeCCcccchhhhhhhcCCCCCCCCc
Q 009181 255 V-DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG-TCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (541)
Q Consensus 255 ~-~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~-i~lhvD~a~gg~~~~f~~~~g~~~p~~~~ 332 (541)
+ ++...+++ +++++|++++|+||+|.+.|++++.++++.++ .++++|++|+.+... +. .+....
T Consensus 118 ~~~~~~~~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~-----~~-~~~~~~ 183 (350)
T 3fkd_A 118 SNEDIGEADF--------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTE-----EV-IRPADI 183 (350)
T ss_dssp TTSCGGGSCC--------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSS-----CC-CCGGGG
T ss_pred cCCccccCcc--------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccC-----cc-hhhHHh
Confidence 9 65444444 57899999999999999999999999999886 799999999765431 11 011222
Q ss_pred CCCCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHH-HH
Q 009181 333 SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG-YL 410 (541)
Q Consensus 333 ~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g-~~ 410 (541)
...+.+++..+++|++. .+.++|+++. ++++..........| .....+++++...+.... +.
T Consensus 184 ~~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~ 247 (350)
T 3fkd_A 184 KGRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPW---------------AVNALAIEAAKFILIHPAQFT 247 (350)
T ss_dssp TTCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTT---------------CSCHHHHHHHHHHHHCTTTTC
T ss_pred hcCCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCCC---------------CCCHHHHHHHHHHHhCHHHHH
Confidence 33455688889999843 3455888666 555443322111111 111335555555553322 44
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHh-CCceeccC---C--CCCeEEEEecCCC
Q 009181 411 ENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSS-KGWHLNPL---Q--RPNSIHICVTLQH 484 (541)
Q Consensus 411 ~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~-~G~~~~~~---~--~~~~iRi~~~~~~ 484 (541)
+..++..++++++.+.|+++|++++. ++..+++++..+..+..++.+.|.+ +|+.+... + .++++|+|++ +
T Consensus 248 ~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~ 324 (350)
T 3fkd_A 248 LPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--R 324 (350)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--C
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--C
Confidence 44555558899999999999999875 5566677777765578899999998 89876532 1 1579999987 4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009181 485 VAVVDVFLRDLRESVET 501 (541)
Q Consensus 485 ~e~id~~i~~L~~~~~~ 501 (541)
.+++++++++|+++.++
T Consensus 325 ~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 325 PAQNQLFIKALETFLEK 341 (350)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68899999999888754
No 152
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.90 E-value=1.3e-21 Score=202.97 Aligned_cols=295 Identities=16% Similarity=0.145 Sum_probs=199.8
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHH--HhhcCCCCCeEEecCCccchHHHHHhhcCCeEEE
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYM--RNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~--~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~ 252 (541)
++++.+++++|.+ . + +++++||+|+..++++++... ..++| ++|+++.++|+++..+++..|++++.
T Consensus 38 ~l~~~la~~~~~~--~----~--i~~~sGt~a~~~al~~~~~~~~~~~~~g---~~Vi~~~~~~~~~~~~~~~~g~~~~~ 106 (390)
T 3b8x_A 38 QYETQFAKTFGSK--Y----A--VMVSSGSTANLLMIAALFFTKKPRLKKG---DEIIVPAVSWSTTYYPLQQYGLRVKF 106 (390)
T ss_dssp HHHHHHHHHHTCS--E----E--EEESCHHHHHHHHHHHTTSSSSCSCCTT---CEEEEESSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCC--c----E--EEECCHHHHHHHHHHHHHhhhhcCCCCc---CEEEECCCCcHHHHHHHHHcCCEEEE
Confidence 3555888888876 2 2 788899999999999873100 01244 89999999999999999999999999
Q ss_pred eeCCCC-CccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCC
Q 009181 253 VPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (541)
Q Consensus 253 v~~~~~-~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~ 331 (541)
++++++ +.+|+++|+++++++|++|++++ ++|...|+++|.++|++||+++|+|++|+.+..+-... +.
T Consensus 107 ~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-------~g 176 (390)
T 3b8x_A 107 VDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKC-------AG 176 (390)
T ss_dssp ECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEE-------TT
T ss_pred EecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcc-------cc
Confidence 999874 99999999999999999988874 57889999999999999999999999998544320000 11
Q ss_pred cCCCCceEEEeC-CCCCCCCCCCceEEEEecccccccccc-cccccCCC--------------cc---CCCcccCCCCCc
Q 009181 332 FSVQGVTSISVD-VHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGG--------------LY---VSPTVAGSRPGG 392 (541)
Q Consensus 332 ~~~~gvdsis~~-~hK~~~~p~g~g~ll~~~~~~~~~~~~-~~~~~~~~--------------~~---~~~~~~gsr~~~ 392 (541)
....+.+++.. +||+ .+|.| |+++.+++++...... ....|.+. .+ ......|.+.+.
T Consensus 177 -~~~~~~~~s~~~~k~~-~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 253 (390)
T 3b8x_A 177 -TFGLMGTFSSFYSNHI-ATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRP 253 (390)
T ss_dssp -SSSSEEEEECCTTSSS-CSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCC
T ss_pred -cccceEEEEccCCCCC-ccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCc
Confidence 01123444543 4554 55555 7666655443221100 00011000 00 001112433333
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-Ce--eEEEEecC---CCCHHHHHHHHHhCCce
Q 009181 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-DM--TIVAFGSD---VVDIFEVNDIMSSKGWH 466 (541)
Q Consensus 393 ~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-~~--~~v~f~~~---~~~~~~l~~~l~~~G~~ 466 (541)
.-..+++++.. .+.+++..++..++++++.+.|+++|++++..++ .. ..+.+... +.+..++.+.|.++|+.
T Consensus 254 ~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~ 331 (390)
T 3b8x_A 254 LEMSGAIGIEQ--LKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIE 331 (390)
T ss_dssp CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBC
T ss_pred CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCC
Confidence 33355555544 3677889999999999999999999999887643 22 23445554 34788999999999965
Q ss_pred eccC------CC-C---------------------CeEEEEecCCCH-HHHHHHHHHH
Q 009181 467 LNPL------QR-P---------------------NSIHICVTLQHV-AVVDVFLRDL 495 (541)
Q Consensus 467 ~~~~------~~-~---------------------~~iRi~~~~~~~-e~id~~i~~L 495 (541)
+... .. | +.+|++++..++ +|++++++.|
T Consensus 332 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 332 CRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred eeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 4431 01 1 258999887766 9999998876
No 153
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.90 E-value=3.6e-22 Score=210.97 Aligned_cols=322 Identities=12% Similarity=0.092 Sum_probs=214.7
Q ss_pred HHHHHHHHHhhcc-cCCCCcccchHHHHHHHHHHHHHHHHhC--CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhh
Q 009181 145 FSLINEACSMFAH-TNPLHLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK 221 (541)
Q Consensus 145 ~~~~~~~~~~~~~-~n~~~~~~~~~~~~~e~ev~~~la~l~g--~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~ 221 (541)
.+.+.+.+..... .....|...++..++++++.+++. .| .++++ + ++|+|+++++..+ .++.+
T Consensus 88 ~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~----i--~~t~G~~~al~~~-~~l~~----- 153 (449)
T 3qgu_A 88 ADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADE----I--FISDGSKCDIARI-QMMFG----- 153 (449)
T ss_dssp HHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGG----E--EEESCHHHHHHHH-HHHHC-----
T ss_pred HHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHH----E--EEccCHHHHHHHH-HHHhC-----
Confidence 3444445443322 222334334455666665555554 34 44444 6 8999999999987 55542
Q ss_pred cCCCCCeEEecCCccchHHHHHhhcCCe----------EEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccc
Q 009181 222 RGITRPEMIIPVSAHSAYDKAAQYFNIK----------LWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGII 289 (541)
Q Consensus 222 ~Gi~~~~vi~~~~~h~s~~ka~~~~G~~----------v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~i 289 (541)
+| ++|+++.+.|+++...++..|.+ ++.+|+++ ++..|++++ +++++|++++|+||+|.+
T Consensus 154 ~g---d~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~ 225 (449)
T 3qgu_A 154 SK---PTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAA 225 (449)
T ss_dssp SS---SCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCC
T ss_pred CC---CEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCCCCCCCCc
Confidence 56 89999999999999999999998 99999975 344454321 578899999999999999
Q ss_pred cC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcC-CCCceEEEeCCCCCCC-CCCCceEEEEecccc
Q 009181 290 DP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREI 364 (541)
Q Consensus 290 d~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~-~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~ 364 (541)
.+ +++|+++|++||+++++|++|+++... ..+. .+-..+. ..+++++..+++|.+. ++.++|+++.+++ +
T Consensus 226 ~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~---~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~ 300 (449)
T 3qgu_A 226 ATRAQLTELVNFARKNGSILVYDAAYALYISN---PDCP-KTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA-L 300 (449)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCC---TTSC-SSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTT-C
T ss_pred CCHHHHHHHHHHHHHCCcEEEEEcchHhhhcC---CCCC-CCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHH-H
Confidence 76 788999999999999999999886541 1000 0001111 2456888999999943 4556898766543 3
Q ss_pred ccc-ccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC
Q 009181 365 RKH-QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG---QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD 440 (541)
Q Consensus 365 ~~~-~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~ 440 (541)
... .......|... ..+.-.+....++.++...+. .+.+++..+++.++++++.+.|+++ ++++..+..
T Consensus 301 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 373 (449)
T 3qgu_A 301 KYANGEPVHADWNRV------MTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDD 373 (449)
T ss_dssp BCTTSCBHHHHHHHH------HHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSS
T ss_pred HhhhhhhHHHHHHHH------hhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCC
Confidence 321 00000000000 000001112335555555553 3567888999999999999999998 888876666
Q ss_pred eeEEEEecCCCCHHHHHHHHHhC-Cceecc---C--CCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 441 MTIVAFGSDVVDIFEVNDIMSSK-GWHLNP---L--QRPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 441 ~~~v~f~~~~~~~~~l~~~l~~~-G~~~~~---~--~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
..++++.+++.+..++.+.|.++ |+.+.. + ..++++|+++.. +.+++++++++|++++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 374 APYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEAVRRFKEAYGK 439 (449)
T ss_dssp SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHC-
T ss_pred eeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 77788887655788888888876 876543 1 124799999764 669999999999998754
No 154
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.90 E-value=2.3e-23 Score=218.33 Aligned_cols=322 Identities=12% Similarity=0.122 Sum_probs=210.4
Q ss_pred HHHHHHHHhhccc-CCCCcccchHHHHHHHHHHHHHHHHhCC--CCC--CCCCccceEEcCcHHHHHHHHHHHHHHHHHh
Q 009181 146 SLINEACSMFAHT-NPLHLDIFQSVARFEAEVIAMTAALLGN--KEK--ASGGQVCGNMTSGGTESILLAVKSSRDYMRN 220 (541)
Q Consensus 146 ~~~~~~~~~~~~~-n~~~~~~~~~~~~~e~ev~~~la~l~g~--~~~--~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~ 220 (541)
..+.+++...+.. ....|....+..++.+++.+++....+. +++ + + ++|+|||+|+..+++.+...
T Consensus 70 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~----i--~~t~G~t~al~~~~~~~~~~--- 140 (420)
T 4f4e_A 70 RAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVV----T--AQALGGTGALKIGADFLRTL--- 140 (420)
T ss_dssp HHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE----E--EEEEHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceE----E--EECCccHHHHHHHHHHHHHh---
Confidence 3444444444333 2234545566667777666666543331 233 3 5 89999999999996543211
Q ss_pred hcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeC--CCCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC---H
Q 009181 221 KRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV--DKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---I 292 (541)
Q Consensus 221 ~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~--~~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~---i 292 (541)
.+| ++|+++.++|+++...++..|++++.+|+ ++++.+|+++|+++++ ++++++++++|+||||.+.+ +
T Consensus 141 ~~g---d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l 217 (420)
T 4f4e_A 141 NPK---AKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQW 217 (420)
T ss_dssp CTT---CCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHH
T ss_pred CCC---CEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHH
Confidence 256 89999999999999999999999999999 3478999999999998 67899999999999999965 6
Q ss_pred HHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEE--ecccccccc
Q 009181 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLY--RNREIRKHQ 368 (541)
Q Consensus 293 ~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~--~~~~~~~~~ 368 (541)
++|+++|++||+++++|++|+++....-... ..+..+. ...+.+++..+++|. ++++| +|+++. .+++.....
T Consensus 218 ~~i~~~~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~~-~~~~~~i~~~S~SK~-~~~~G~RiG~~~~~~~~~~~~~~~ 294 (420)
T 4f4e_A 218 AQVVEVVKARRLVPFLDIAYQGFGESIEADA-AAVRLFA-AANLNVFVSSSFSKS-FSLYGERVGALSIITDSKDEAARV 294 (420)
T ss_dssp HHHHHHHHHHTCEEEEEESCTTSSSCTTGGG-HHHHHHH-HTTCCEEEEEECTTT-TTCGGGCEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHCCcEEEEccccccccCCcchhh-HHHHHHH-hcCCCEEEEEeCCcc-CcCcCCCcEEEEEEcCCHHHHHHH
Confidence 7899999999999999999987764100000 0000000 123446778899999 56555 888764 233322110
Q ss_pred cccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEec
Q 009181 369 FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIKEI---PELFIIG 437 (541)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~ 437 (541)
...........+..+ + ..++.++...+. .+.+++..+++.++++++.+.|+++ +++.+..
T Consensus 295 ~~~~~~~~~~~~~~~----~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 365 (420)
T 4f4e_A 295 LSQLKRVIRTNYSNP----P-----THGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFIN 365 (420)
T ss_dssp HHHHHHHHHTTTSSC----C-----SHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH
T ss_pred HHHHHHHHhcccCCC----C-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEC
Confidence 000000000000000 0 112333322221 3456788889999999999999986 4666554
Q ss_pred CCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 438 RPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 438 ~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
+....++++. .+...+...+.++|+.+... .|+|++..+++++++++++|++++
T Consensus 366 ~~~g~~~~~~---~~~~~~~~~l~~~gI~v~~~-----~Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 366 AQRGMFSYSG---LTSAQVDRLREEFGIYAVST-----GRICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp HSCSSEEECC---CCHHHHHHHHHHHCEECCTT-----SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred CCccEEEEeC---CCHHHHHHHHHhCCEEecCC-----CeEEEecCCHHHHHHHHHHHHHHh
Confidence 4333333332 34567777888889877642 399998767788999999999875
No 155
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.90 E-value=9.8e-22 Score=203.75 Aligned_cols=289 Identities=17% Similarity=0.129 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC--CCeEEecCCccchHHHHHhhcCC--
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSAHSAYDKAAQYFNI-- 248 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~--~~~vi~~~~~h~s~~ka~~~~G~-- 248 (541)
..++++++++++|. +. + ++|+|||+|+..++++++.......|.. +++|+++.++|++....+...+.
T Consensus 80 ~~~l~~~la~~~g~--~~----v--~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 151 (392)
T 3ruy_A 80 LGPWYEKVAKLTNK--EM----V--LPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNE 151 (392)
T ss_dssp HHHHHHHHHHHHTC--SE----E--EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCT
T ss_pred HHHHHHHHHHhcCC--CE----E--EEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCCh
Confidence 44566789999982 22 4 8999999999999998875422112211 36899999988765544433321
Q ss_pred -----------eEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccC----HHHHHHHHHHcCCEEEEeCCcc
Q 009181 249 -----------KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 249 -----------~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i~lhvD~a~g 313 (541)
.+..++.+ |+++|++++++++++|++++++||+|.+.| +++|.++|++||+++|+|++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~ 226 (392)
T 3ruy_A 152 EYKRGFGPMLPGIIVIPYG-----DLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT 226 (392)
T ss_dssp TTTTTCCSCCSSEEEECTT-----CHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT
T ss_pred hhccccCCCCCCCeeeCcc-----cHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 25555543 899999999999999999999999999998 9999999999999999999997
Q ss_pred cchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCC-CCceEEEEecccccccccccccccCCCccCCCcccCCCCCc
Q 009181 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (541)
Q Consensus 314 g~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~ 392 (541)
++... |... ..+......|+++++ |.+.++ ..+|+++.++ ++........ .+.....
T Consensus 227 ~~~~~-----g~~~-~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~-~~~~~~~~~~-------------~~~~~~~ 284 (392)
T 3ruy_A 227 GLGRT-----GKVF-ACDWDNVTPDMYILG--KALGGGVFPISCAAANR-DILGVFEPGS-------------HGSTFGG 284 (392)
T ss_dssp TTTTT-----SSSS-GGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECH-HHHTTCCTTS-------------SCCSSTT
T ss_pred CCCcc-----ccch-hhhccCCCCCEEEEc--hhhhCChhhhEEEEECH-HHHhhhccCC-------------cCCCCCC
Confidence 65331 1100 111112234777775 874333 5688876654 3332211000 0001111
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC--CCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccC
Q 009181 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI--PELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPL 470 (541)
Q Consensus 393 ~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~--~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~ 470 (541)
...++.++...+.....++..++..++++++.+.|+++ +.+... ++..+++.|.+++ +..++.+.|.++|+.+...
T Consensus 285 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~l~~~l~~~gi~v~~~ 362 (392)
T 3ruy_A 285 NPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEV-RGKGLFIGIELNE-PARPYCEQLKAAGLLCKET 362 (392)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE-EEETTEEEEEESS-CSHHHHHHHHTTTEECCCB
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcc-hHHHHHHHHHHCCcEEecC
Confidence 12233333333322222678888999999999999986 345443 3345677777655 7788999999999877653
Q ss_pred CCCCeEEEEecCCCH-HHHHHHHHHHHHHH
Q 009181 471 QRPNSIHICVTLQHV-AVVDVFLRDLRESV 499 (541)
Q Consensus 471 ~~~~~iRi~~~~~~~-e~id~~i~~L~~~~ 499 (541)
.++++|++++..++ +++++++++|++++
T Consensus 363 -~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 363 -HENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp -TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999877655 99999999999875
No 156
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.90 E-value=1.3e-22 Score=212.78 Aligned_cols=290 Identities=15% Similarity=0.140 Sum_probs=197.9
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH----
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---- 241 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k---- 241 (541)
.|...++ ++.+++++|.+.. +++++|++|+..+++++.. +| ++|+++.+.|.+...
T Consensus 81 ~p~~~~l----e~~lA~l~g~~~~--------v~~~sG~~Ai~~al~al~~-----~G---d~Vi~~~~~y~~~~~~~~~ 140 (430)
T 3ri6_A 81 NPTVEDL----EQRLKNLTGALGV--------LALGSGMAAISTAILTLAR-----AG---DSVVTTDRLFGHTLSLFQK 140 (430)
T ss_dssp CHHHHHH----HHHHHHHHTCSEE--------EEESCHHHHHHHHHHHHCC-----TT---CEEEEETTCCHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHHCCCcE--------EEECCHHHHHHHHHHHHhC-----CC---CEEEEcCCCchhHHHHHHH
Confidence 3554444 4588889988642 6777788999999988742 66 899999999998777
Q ss_pred HHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhh
Q 009181 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (541)
Q Consensus 242 a~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~ 321 (541)
.++.+|++++.|+.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++|+|++++.+.+
T Consensus 141 ~~~~~G~~~~~v~~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~---- 211 (430)
T 3ri6_A 141 TLPSFGIEVRFVDVM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL---- 211 (430)
T ss_dssp HHHHTTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT----
T ss_pred HHHHcCCEEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc----
Confidence 667889999999986 99999999999999999999999999999999999999999999999999875432
Q ss_pred hcCCCCCCCCcCCCCceEEEeCCCCCCCCCC--CceEEEEecc-cccc-cccccccccCCC------cc-CCCcccCCCC
Q 009181 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNR-EIRK-HQFVAVTEWSGG------LY-VSPTVAGSRP 390 (541)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~--g~g~ll~~~~-~~~~-~~~~~~~~~~~~------~~-~~~~~~gsr~ 390 (541)
.+....|+|+++.+++|++.++. -.|+++.+.+ .+.. ..+.....+.+. .. ......|...
T Consensus 212 --------~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~ 283 (430)
T 3ri6_A 212 --------LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSL 283 (430)
T ss_dssp --------CCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCC
T ss_pred --------CChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCC
Confidence 22234578999999999954431 2454444333 2210 000000000000 00 0000112222
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC----------------ee-EEEEecCCC-C
Q 009181 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD----------------MT-IVAFGSDVV-D 452 (541)
Q Consensus 391 ~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~----------------~~-~v~f~~~~~-~ 452 (541)
. ...+|.++ .+.+.+....++..++++++.+.|++.|+++.+..|. ++ +++|.+++. +
T Consensus 284 ~--~~~a~l~l--~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~ 359 (430)
T 3ri6_A 284 S--PHNAYLQS--LGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEA 359 (430)
T ss_dssp C--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHH
T ss_pred C--HHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHH
Confidence 2 22556555 3567778888999999999999999999988554443 45 999998732 3
Q ss_pred HHHHHHHHHhCCcee------c-------------------cC-CCCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 453 IFEVNDIMSSKGWHL------N-------------------PL-QRPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 453 ~~~l~~~l~~~G~~~------~-------------------~~-~~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
..++.+.+...+... + .. ..++.+|+|++. |+++.++++|++++
T Consensus 360 ~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~dl~~dl~~al 429 (430)
T 3ri6_A 360 SYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIEDLKEDILQAL 429 (430)
T ss_dssp HHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHhh
Confidence 344444444322100 0 01 134789999997 66777788888765
No 157
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.90 E-value=2.1e-22 Score=210.29 Aligned_cols=296 Identities=15% Similarity=0.148 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH---HHHhhc
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD---KAAQYF 246 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~---ka~~~~ 246 (541)
..+++.+++++++++|.++.. + +++ +|++|+..+++++.. +| ++|+++.+.|.++. ......
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~----v--~~~-sGs~a~~~a~~~~~~-----~g---d~v~~~~~~~~~~~~~~~~~~~~ 139 (420)
T 3gbx_A 75 DVVEQLAIDRAKELFGADYAN----V--QPH-SGSQANFAVYTALLQ-----PG---DTVLGMNLAQGGHLTHGSPVNFS 139 (420)
T ss_dssp HHHHHHHHHHHHHHHTCSEEE----C--CCS-SHHHHHHHHHHHHCC-----TT---CEEEEEEEC------------CH
T ss_pred HHHHHHHHHHHHHHhCCCCce----e--Eec-CcHHHHHHHHHHhcC-----CC---CEEEecchhhcceeccchhhhhc
Confidence 456777778999999997664 3 344 458999999888753 66 89999999998843 222233
Q ss_pred C--CeEEEeeCCCCCccCHHHHHHhhcc-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 247 N--IKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 247 G--~~v~~v~~~~~~~~d~~~Le~~i~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
| .....++.++++.+|+++|++++++ ++++|++++|+++ ...|+++|.++|++||+++|+|++|+.+... .
T Consensus 140 g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~----~ 213 (420)
T 3gbx_A 140 GKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIA----A 213 (420)
T ss_dssp HHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHH----T
T ss_pred ccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhcee----c
Confidence 4 4555666777889999999999987 5899999888874 5889999999999999999999998644331 1
Q ss_pred CCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecc--cccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR--EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 324 g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
+. .......+|+++.++||++.+|.| |+++.++. ++.......... ...++.....++++.+++
T Consensus 214 ~~----~~~~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~a~ 279 (420)
T 3gbx_A 214 GV----YPNPVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFP---------SAQGGPLMHVIAGKAVAL 279 (420)
T ss_dssp TS----SCCSTTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC-------------CCCCHHHHHHHHHHH
T ss_pred cc----CCcccccCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCC---------CCCCCcchhHHHHHHHHH
Confidence 11 111223479999999999656775 76665541 333221110000 011122222344556566
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-CCeeEEEEecC--CCCHHHHHHHHHhCCceeccC--------
Q 009181 402 MSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR-PDMTIVAFGSD--VVDIFEVNDIMSSKGWHLNPL-------- 470 (541)
Q Consensus 402 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~f~~~--~~~~~~l~~~l~~~G~~~~~~-------- 470 (541)
.....+++++..++..++++++.+.|++. +++++.+ ....++++... +.+...+.+.|.++|+.+...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 358 (420)
T 3gbx_A 280 KEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKS 358 (420)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSC
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccc
Confidence 55556778899999999999999999984 8888754 35667777654 346788889999999876541
Q ss_pred -CCCCeEEEEecCCC-----HHHHHHHHHHHHHHHHH
Q 009181 471 -QRPNSIHICVTLQH-----VAVVDVFLRDLRESVET 501 (541)
Q Consensus 471 -~~~~~iRi~~~~~~-----~e~id~~i~~L~~~~~~ 501 (541)
..+..+|++++..+ .++++++++.|++++++
T Consensus 359 ~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 359 PFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 12356999986543 48899999999988754
No 158
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.90 E-value=2.1e-22 Score=209.00 Aligned_cols=321 Identities=12% Similarity=0.083 Sum_probs=209.3
Q ss_pred HHHHHHHHh-hccc-CCCCcccchHHHHHHHHHHHHHHHHhCC--CCC--CCCCccceEEcCcHHHHHHHHHHHHHHHHH
Q 009181 146 SLINEACSM-FAHT-NPLHLDIFQSVARFEAEVIAMTAALLGN--KEK--ASGGQVCGNMTSGGTESILLAVKSSRDYMR 219 (541)
Q Consensus 146 ~~~~~~~~~-~~~~-n~~~~~~~~~~~~~e~ev~~~la~l~g~--~~~--~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~ 219 (541)
..+.+++.. .+.. ...+|...++..++.+++.+++....+. +++ + + ++|+|||+|+..+++.+...
T Consensus 47 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~----i--~~t~g~~~a~~~~~~~~~~~-- 118 (397)
T 3fsl_A 47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVA----T--IQTLGGSGALKVGADFLKRY-- 118 (397)
T ss_dssp HHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE----E--EEESHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceE----E--EEcCCcHHHHHHHHHHHHhc--
Confidence 444555554 4433 2234544556666776666665543331 333 4 5 89999999999997544311
Q ss_pred hhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeC--CCCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC---
Q 009181 220 NKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV--DKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP--- 291 (541)
Q Consensus 220 ~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~--~~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~--- 291 (541)
++| ++|+++.++|+++...++..|++++.+|+ ++++.+|+++|+++++ +++.++++++|+||||.+.+
T Consensus 119 -~~g---d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~ 194 (397)
T 3fsl_A 119 -FPE---SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQ 194 (397)
T ss_dssp -CTT---CCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHH
T ss_pred -CCC---CeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHH
Confidence 255 89999999999999999999999999999 4578999999999998 67899999999999999955
Q ss_pred HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEe--ccccccc
Q 009181 292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYR--NREIRKH 367 (541)
Q Consensus 292 i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~--~~~~~~~ 367 (541)
+++|+++|++||+++++|++|+.+.... .........+. ...+..++..+++|. +++.| +|+++.. +++....
T Consensus 195 l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~S~SK~-~~~~G~riG~~~~~~~~~~~~~~ 271 (397)
T 3fsl_A 195 WDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIA-SAGLPALVSNSFSKI-FSLYGERVGGLSVMCEDAEAAGR 271 (397)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHH-HTTCCEEEEEECTTT-TTCGGGCCEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHH-hcCCCEEEEeccccc-ccCcCCCeeEEEEecCCHHHHHH
Confidence 6699999999999999999998775310 00000000000 123346777888998 56555 7887653 3333221
Q ss_pred ccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEe
Q 009181 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIKEIP---ELFII 436 (541)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~v~ 436 (541)
.......+....+..+ + ..++.++...+. .+.+++..++..++++++.+.|++++ ++++.
T Consensus 272 ~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 342 (397)
T 3fsl_A 272 VLGQLKATVRRNYSSP----P-----NFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYL 342 (397)
T ss_dssp HHHHHHHHHHTTTSSC----C-----SHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHH
T ss_pred HHHHHHHHHHhccCCC----C-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceee
Confidence 1100000000000000 0 112222222222 45678888899999999999999864 56655
Q ss_pred cCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHH
Q 009181 437 GRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRES 498 (541)
Q Consensus 437 ~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~ 498 (541)
.+....++++. .+...+...+.++|+.+...+ |++++..+++++++++++|+++
T Consensus 343 ~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~-----Ris~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 343 LNQRGMFSYTG---LSAAQVDRLREEFGVYLIASG-----RMCVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp HHCCSSEEECC---CCHHHHHHHHHTTCEECCTTC-----EEEGGGCCTTTHHHHHHHHHHH
T ss_pred cCCceEEEecC---CCHHHHHHHHHhCCEEECCCC-----eEEEEecCHhhHHHHHHHHHhh
Confidence 43333333333 345667788888998776422 9999876778899999999875
No 159
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.90 E-value=5.6e-22 Score=204.15 Aligned_cols=281 Identities=16% Similarity=0.125 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHh-hcCCCCCeEEecCCccchHHHHHhhcC-C---
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSAHSAYDKAAQYFN-I--- 248 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~-~~Gi~~~~vi~~~~~h~s~~ka~~~~G-~--- 248 (541)
.++++++++++|.+ ++ + ++|+|||+|+.+++++++..... ++| +++|+++++.|+.+...+...+ .
T Consensus 73 ~~l~~~la~~~g~~-~~----v--~~~~g~t~a~~~~~~~~~~~~~~~~~g--~~~vl~~~~~y~~~~~~~~~~~~~~~~ 143 (375)
T 2eh6_A 73 EELAHKLVKHFWTE-GK----V--FFANSGTESVEAAIKLARKYWRDKGKN--KWKFISFENSFHGRTYGSLSATGQPKF 143 (375)
T ss_dssp HHHHHHHHHTSSSC-EE----E--EEESSHHHHHHHHHHHHHHHHHHTTCC--CCEEEEEBTCCCCSSHHHHHHCBCGGG
T ss_pred HHHHHHHHhhcCCC-Ce----E--EEeCchHHHHHHHHHHHHHHhccCCCC--CCEEEEECCCcCCCchhhhhhcCCccc
Confidence 45667899999984 43 5 89999999999999876432210 122 3789999988666444333322 2
Q ss_pred ----e-----EEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccC----HHHHHHHHHHcCCEEEEeCCcccc
Q 009181 249 ----K-----LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGF 315 (541)
Q Consensus 249 ----~-----v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i~lhvD~a~gg~ 315 (541)
. +..+|. .|+++|++++++++++|++++++||+|.+.| +++|.++|++||+++|+|++|+++
T Consensus 144 ~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 218 (375)
T 2eh6_A 144 HKGFEPLVPGFSYAKL-----NDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGI 218 (375)
T ss_dssp TTTTCSCCSSEEEECT-----TCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cCCCCCCCCCceeCCC-----chHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 1 344443 4999999999999999999999999999987 999999999999999999999865
Q ss_pred hhhhhhhcCCCCCCCCcCCCC--ceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch
Q 009181 316 VLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (541)
Q Consensus 316 ~~~f~~~~g~~~p~~~~~~~g--vdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~ 393 (541)
... +. .+.....| .|+++++ |++.+|.++|+++.+++ +...... ...+. + .+..
T Consensus 219 ~~~-----~~---~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~-~~~~~~~---~~~~~-----~-----~~~~ 274 (375)
T 2eh6_A 219 GRT-----GE---FYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREE-VAQSFTP---GSHGS-----T-----FGGN 274 (375)
T ss_dssp TTT-----SS---SSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHH-HHTTCCT---TSCCC-----S-----STTC
T ss_pred CCC-----Cc---chhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHH-HHhhhcC---CCCCC-----C-----CCCC
Confidence 321 10 12222233 6888777 77667788998887653 3322111 00001 0 1111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCC
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRP 473 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~ 473 (541)
...+.++...+... .+..++..++++++.+.|++++... . ++...++++...+ +..++.+.|.++|+.+... .+
T Consensus 275 ~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~g~~~~~~~~~-~~~~~~~~l~~~gi~~~~~-~~ 348 (375)
T 2eh6_A 275 PLACRAGTVVVDEV--EKLLPHVREVGNYFKEKLKELGKGK-V-KGRGLMLGLELER-ECKDYVLKALEKGLLINCT-AG 348 (375)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSSE-E-EEETTEEEEECSS-CCHHHHHHHHHTTEECEEE-TT
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCC-c-eEEEEEEEEEEcC-cHHHHHHHHHHCCCEEecC-CC
Confidence 22333333333221 1678888889999999999875422 2 2345677777654 5678999999999876543 35
Q ss_pred CeEEEEecCCC-HHHHHHHHHHHHHH
Q 009181 474 NSIHICVTLQH-VAVVDVFLRDLRES 498 (541)
Q Consensus 474 ~~iRi~~~~~~-~e~id~~i~~L~~~ 498 (541)
+++|++++..+ .+++++++++|+++
T Consensus 349 ~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 349 KVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 78999988544 49999999999875
No 160
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.90 E-value=2.2e-22 Score=207.00 Aligned_cols=312 Identities=14% Similarity=0.055 Sum_probs=204.2
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC
Q 009181 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~ 225 (541)
..+.+++...+....+. ..+...+ +++.+++++|.+ . + ++|+|||+|+..++++++- ++|
T Consensus 16 ~~v~~a~~~~~~~~~~~--~~~~~~~----l~~~la~~~~~~--~----~--~~~~sGt~al~~al~~~~~----~~g-- 75 (367)
T 3nyt_A 16 DKIDAGIQRVLRHGQYI--LGPEVTE----LEDRLADFVGAK--Y----C--ISCANGTDALQIVQMALGV----GPG-- 75 (367)
T ss_dssp HHHHHHHHHHHHHCCCS--SCHHHHH----HHHHHHHHHTCS--E----E--EEESCHHHHHHHHHHHTTC----CTT--
T ss_pred HHHHHHHHHHHhcCCcc--CChHHHH----HHHHHHHHhCCC--c----E--EEeCCHHHHHHHHHHHhCC----CCc--
Confidence 34444444444433222 3455444 455888888876 2 3 8999999999999998731 255
Q ss_pred CCeEEecCCccchHHHHHhhcCCeEEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCC
Q 009181 226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGT 304 (541)
Q Consensus 226 ~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i 304 (541)
++|+++...|+++..+++..|++++.+++++ ++.+|+++|++++++++++|+ ++||+|...|+++|.++|++||+
T Consensus 76 -d~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~ 151 (367)
T 3nyt_A 76 -DEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGI 151 (367)
T ss_dssp -CEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTC
T ss_pred -CEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCC
Confidence 8999999999999999999999999999986 489999999999999998887 67789999999999999999999
Q ss_pred EEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeC--CCCCCCCCCC-ceEEEEecccccccccccccccCCCccC
Q 009181 305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVD--VHKYGLAPKG-TSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (541)
Q Consensus 305 ~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~--~hK~~~~p~g-~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 381 (541)
++|+|++|+.+.. + . +. .....| |+++++ +||++ ++.| +|+++.+++++...............+
T Consensus 152 ~li~D~a~~~g~~-~-~--~~-----~~~~~~-di~~~Sf~~~K~l-~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~- 219 (367)
T 3nyt_A 152 PVIEDAAQSFGAS-Y-K--GK-----RSCNLS-TVACTSFFPSAPL-GCYGDGGAIFTNDDELATAIRQIARHGQDRRY- 219 (367)
T ss_dssp CBEEECTTTTTCE-E-T--TE-----ETTSSS-SEEEEECCTTSSS-CCSSCCEEEEESCHHHHHHHHHHTBTTEEETT-
T ss_pred EEEEECccccCCe-E-C--Ce-----eccCCC-CEEEEECCCCCcC-CCcCceeEEEeCCHHHHHHHHHHHhcCCCcCc-
Confidence 9999999864322 1 0 10 011112 566665 69994 5533 666666555543321111000000000
Q ss_pred CCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC-----eeEEEEecCCCCHHHH
Q 009181 382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD-----MTIVAFGSDVVDIFEV 456 (541)
Q Consensus 382 ~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-----~~~v~f~~~~~~~~~l 456 (541)
.....|.........+.+++.. .+.+++..++..++++++.+.|+++ ++.+...+. ...+.+... +..++
T Consensus 220 ~~~~~g~~~~~~~~~aa~~~~~--l~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 294 (367)
T 3nyt_A 220 HHIRVGVNSRLDTLQAAILLPK--LEIFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD--NRESV 294 (367)
T ss_dssp EECSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS--SHHHH
T ss_pred eeeccCcCCCccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC--CHHHH
Confidence 0011122222222233444332 3456778888899999999999987 455433221 223444443 67889
Q ss_pred HHHHHhCCceeccCC----------------CC-------CeEEEEecCCCH-HHHHHHHHHHHHH
Q 009181 457 NDIMSSKGWHLNPLQ----------------RP-------NSIHICVTLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 457 ~~~l~~~G~~~~~~~----------------~~-------~~iRi~~~~~~~-e~id~~i~~L~~~ 498 (541)
.+.|.++|+.+.... .| ..+|+++....+ +|++++++.|++.
T Consensus 295 ~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 295 QASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 999999996543211 01 467888766555 9999999988764
No 161
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.89 E-value=6.4e-22 Score=207.58 Aligned_cols=286 Identities=16% Similarity=0.145 Sum_probs=193.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH----hhcCCe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNIK 249 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~----~~~G~~ 249 (541)
.++++.+++++|.+. . +++++|++|+..+++++. ++| ++|+++...|++....+ +..|++
T Consensus 61 ~~l~~~la~~~g~~~-~-------v~~~sGt~A~~~~l~~~~-----~~g---d~vi~~~~~~~~~~~~~~~~~~~~g~~ 124 (421)
T 2ctz_A 61 DVLEKRLAALEGGKA-A-------LATASGHAAQFLALTTLA-----QAG---DNIVSTPNLYGGTFNQFKVTLKRLGIE 124 (421)
T ss_dssp HHHHHHHHHHHTCSE-E-------EEESSHHHHHHHHHHHHC-----CTT---CEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred HHHHHHHHHHhCCCc-e-------EEecCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 346668889998862 1 455666999999999873 256 89999999999987765 778999
Q ss_pred EEEe-eCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCc-ccchhhhhhhcCCCC
Q 009181 250 LWRV-PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL-GGFVLPFAKKLGYPI 327 (541)
Q Consensus 250 v~~v-~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~-gg~~~~f~~~~g~~~ 327 (541)
++.+ +.+ |+++++++|+++|++|++++++||+|.+.|+++|+++|++||+++|+|+++ +.+.. .
T Consensus 125 ~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~---------~ 190 (421)
T 2ctz_A 125 VRFTSREE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL---------L 190 (421)
T ss_dssp EEECCTTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS---------C
T ss_pred EEEECCCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc---------C
Confidence 9999 765 899999999999999999999999999999999999999999999999999 53311 1
Q ss_pred CCCCcCCCCceEEEeCCCCCCCCCCC-ceEEEEec--ccc----cccccccccccCCCccC---------C------Ccc
Q 009181 328 PPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRN--REI----RKHQFVAVTEWSGGLYV---------S------PTV 385 (541)
Q Consensus 328 p~~~~~~~gvdsis~~~hK~~~~p~g-~g~ll~~~--~~~----~~~~~~~~~~~~~~~~~---------~------~~~ 385 (541)
.++ ..++|+++.++||++.+|.+ .|++++++ +++ ..........|.+..+. . ...
T Consensus 191 ~~~---~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~ 267 (421)
T 2ctz_A 191 RPL---AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRD 267 (421)
T ss_dssp CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHH
T ss_pred Ccc---ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHh
Confidence 112 24689999999999666553 67677763 222 11110111112111100 0 000
Q ss_pred cCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC------------------CCeeEEEEe
Q 009181 386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR------------------PDMTIVAFG 447 (541)
Q Consensus 386 ~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~------------------~~~~~v~f~ 447 (541)
.|.+.. ...+|+++. +.+.+....++..++++++.+.|+++|+++.+.. ...++++|.
T Consensus 268 ~g~~~~--~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~ 343 (421)
T 2ctz_A 268 QGQALG--PFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFG 343 (421)
T ss_dssp HCCCCC--HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEE
T ss_pred cCCCCC--HHHHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEE
Confidence 122222 224555553 3344566777788999999999999999998742 236789998
Q ss_pred cCCC--CHHHHHHHHHhCCceec-------------------------cCCC-CCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 448 SDVV--DIFEVNDIMSSKGWHLN-------------------------PLQR-PNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 448 ~~~~--~~~~l~~~l~~~G~~~~-------------------------~~~~-~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
+.+. +...+.+.+...++..+ ..+. ++.+|+|++. +++|+++++|++++
T Consensus 344 l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~---e~~~~li~~l~~al 420 (421)
T 2ctz_A 344 LKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL---EHVEDLKAELKEAL 420 (421)
T ss_dssp ETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHT
T ss_pred eCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHh
Confidence 8752 22333343332221100 0011 3789999997 56788888887764
No 162
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.89 E-value=2.1e-21 Score=201.42 Aligned_cols=274 Identities=15% Similarity=0.132 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH----HhhcCC
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFNI 248 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka----~~~~G~ 248 (541)
..++++.+++++|.+ . . +++++|++|+..+++++. ++| ++|+++.+.|.++... ++.+|+
T Consensus 61 ~~~l~~~la~~~g~~-~-----~--i~~~sG~~ai~~~~~~~~-----~~g---d~vl~~~~~y~~~~~~~~~~~~~~g~ 124 (389)
T 3acz_A 61 VEQFEEMVCSIEGAA-G-----S--AAFGSGMGAISSSTLAFL-----QKG---DHLIAGDTLYGCTVSLFTHWLPRFGI 124 (389)
T ss_dssp HHHHHHHHHHHHTCS-E-----E--EEESSHHHHHHHHHTTTC-----CTT---CEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC-e-----E--EEeCCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 344666889999886 3 2 677778899999998763 256 8999999999986665 577899
Q ss_pred eEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
+++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|++||+++++|++|+.+... .
T Consensus 125 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~---------~ 190 (389)
T 3acz_A 125 EVDLIDTS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL---------K 190 (389)
T ss_dssp EEEEECTT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC---------C
T ss_pred EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc---------C
Confidence 99999874 899999999999999999999999999999999999999999999999999866430 1
Q ss_pred CCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhH
Q 009181 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (541)
Q Consensus 329 ~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~ 406 (541)
+++ .++|+++.++||++.+|.+ +|+++.+++++..........|. .... ...+|+++..+.
T Consensus 191 ~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g-----------~~~~--~~~~~~~~~~l~- 253 (389)
T 3acz_A 191 PLE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAG-----------SLMA--PMDAFLCARGMK- 253 (389)
T ss_dssp GGG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHC-----------CCCC--HHHHHHHHHHHT-
T ss_pred ccc---cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcC-----------CCCC--HHHHHHHHcCcc-
Confidence 232 4789999999999777766 58777665244332211111111 1111 236676665443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-----------------CCeeEEEEecCCCCHHHHHHHHHhCCceecc
Q 009181 407 EGYLENTKAIMEVSESIQKGIKEIPELFIIGR-----------------PDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP 469 (541)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-----------------~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~ 469 (541)
.+....++..++++.+.+.|++.+.++-+.. ...++++|...+ ..++.+.+.+.|+....
T Consensus 254 -~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 254 -TLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEB
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEEC
Confidence 3455566667777888888877655443211 125788888764 55666777777743321
Q ss_pred C----------------------------CC-CCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 470 L----------------------------QR-PNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 470 ~----------------------------~~-~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
. +. ++.+|+|++..+ .++++++|++++
T Consensus 331 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~---~~~li~~l~~al 386 (389)
T 3acz_A 331 VSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIEN---VDDIIADLKQAL 386 (389)
T ss_dssp SCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSC---HHHHHHHHHHHH
T ss_pred cCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCC---HHHHHHHHHHHH
Confidence 0 11 478999999854 555666666655
No 163
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.89 E-value=2.8e-22 Score=209.01 Aligned_cols=273 Identities=15% Similarity=0.127 Sum_probs=183.1
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH----HHhhcCCeE
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNIKL 250 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k----a~~~~G~~v 250 (541)
++++.+++++|.+ .. +++++|++|+..+++ +. ++| ++|+++.+.|.+... .++.+|+++
T Consensus 71 ~l~~~la~~~g~~-~~-------i~~~sG~~ai~~~~~-l~-----~~g---d~Vl~~~~~y~~~~~~~~~~~~~~G~~v 133 (403)
T 3cog_A 71 CLEKAVAALDGAK-YC-------LAFASGLAATVTITH-LL-----KAG---DQIICMDDVYGGTNRYFRQVASEFGLKI 133 (403)
T ss_dssp HHHHHHHHHHTCS-EE-------EEESCHHHHHHHHHT-TS-----CTT---CEEEEESSCCHHHHHHHHHTGGGGTCEE
T ss_pred HHHHHHHHHhCCC-cE-------EEECCHHHHHHHHHH-Hh-----CCC---CEEEEeCCCcchHHHHHHHHHHHcCCEE
Confidence 3555888888886 32 444455799998887 53 256 899999999998444 356789999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcC-CEEEEeCCcccchhhhhhhcCCCCCC
Q 009181 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG-TCLHVDLCLGGFVLPFAKKLGYPIPP 329 (541)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~-i~lhvD~a~gg~~~~f~~~~g~~~p~ 329 (541)
+.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++| +++++|++|+.+... . +
T Consensus 134 ~~v~~~-----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~--------~-~ 199 (403)
T 3cog_A 134 SFVDCS-----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQ--------R-P 199 (403)
T ss_dssp EEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTC--------C-T
T ss_pred EEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccC--------C-c
Confidence 999986 899999999999999999999999999999999999999999 999999999876431 1 2
Q ss_pred CCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHH
Q 009181 330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (541)
Q Consensus 330 ~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~ 407 (541)
++ .++|++..++||++.+|.+ +|+++.+++++..........|.. .. ....+|++++.+.
T Consensus 200 ~~---~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~-----------~~--~~~~~~~~~~~l~-- 261 (403)
T 3cog_A 200 LA---LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGA-----------VP--SPIDCYLCNRGLK-- 261 (403)
T ss_dssp TT---TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCC-----------CC--CHHHHHHHHHHHT--
T ss_pred cc---cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCC-----------CC--CHHHHHHHHhhhh--
Confidence 33 4789999999999777766 488777665544322111111111 00 1336676665443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC--------------CCeEEecC---CCeeEEEEecCCCCHHHHHHHHHhCCceecc-
Q 009181 408 GYLENTKAIMEVSESIQKGIKEI--------------PELFIIGR---PDMTIVAFGSDVVDIFEVNDIMSSKGWHLNP- 469 (541)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~--------------~~~~v~~~---~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~- 469 (541)
.+....++..+++..+.+.+++. |++++..+ ...++++|.+++. ..+..+.+.+.|+....
T Consensus 262 ~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~l~~~~i~~~~~ 340 (403)
T 3cog_A 262 TLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-LQHAEIFLKNLKLFTLAE 340 (403)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHHHHHCSSSEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-HHHHHHHHHhCCcceEcc
Confidence 23444555555555555555544 34433322 1367888887542 34556666666653211
Q ss_pred ---------------------------CCC-CCeEEEEecCCCH-HHHHHHHHHHHH
Q 009181 470 ---------------------------LQR-PNSIHICVTLQHV-AVVDVFLRDLRE 497 (541)
Q Consensus 470 ---------------------------~~~-~~~iRi~~~~~~~-e~id~~i~~L~~ 497 (541)
.+. ++.+|+|++..++ ++++++.+.|++
T Consensus 341 s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 341 SLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA 397 (403)
T ss_dssp CCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 022 4789999998665 455555544443
No 164
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.89 E-value=3.8e-22 Score=215.39 Aligned_cols=337 Identities=12% Similarity=0.065 Sum_probs=221.6
Q ss_pred HHHHHHHHHhhcccCCCCcccchHHHHHHHHHHHHHHHHhCC--CC--CCCCCccceEEcCcHHHHHHHHHHHHHHHHHh
Q 009181 145 FSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN--KE--KASGGQVCGNMTSGGTESILLAVKSSRDYMRN 220 (541)
Q Consensus 145 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ev~~~la~l~g~--~~--~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~ 220 (541)
+..+.++.......+ + +....+..++++++.+++.+.++. +. .+ ++ ++|+|+|+|+.+++.++.....-
T Consensus 118 ~~~v~a~~~~~~~~~-y-~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~---~i--~~t~G~t~al~~~~~~l~~~~l~ 190 (533)
T 3f6t_A 118 DKVVAEWVNGAVANN-Y-PVPDRCLVNTEKIINYFLQELSYKDANLAEQT---DL--FPTEGGTAAIVYAFHSLAENHLL 190 (533)
T ss_dssp HHHHHHHHHHHHTCS-C-CSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGE---EE--EEEEHHHHHHHHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHhCC-C-CCCcccHHHHHHHHHHHHHHhcCCCCCCCCcc---eE--EEECCHHHHHHHHHHHhhhhhcc
Confidence 445554444433221 1 223456678888888888776332 22 12 26 89999999999999985322112
Q ss_pred hcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC----CCCccCHHHHHHhhccCceEEEeecCCCCCccccCHH---
Q 009181 221 KRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD----KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQ--- 293 (541)
Q Consensus 221 ~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~----~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~--- 293 (541)
++| ++|+++.+.|+++...++..|++++.++++ +++.+|+++|++++++++++|++++|+||+|.+.+.+
T Consensus 191 ~~g---d~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~ 267 (533)
T 3f6t_A 191 KKG---DKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALN 267 (533)
T ss_dssp CTT---CEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHH
T ss_pred CCc---CEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHH
Confidence 356 899999999999999999999999999985 3688999999999999999999999999999998765
Q ss_pred HHHHHHH-HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccc
Q 009181 294 ELGELAL-SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFV 370 (541)
Q Consensus 294 ~I~~la~-~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~ 370 (541)
+|+++|+ +||+++++|++|+++... .+++.....+.++++.+++|. ++++| +|+++.+++........
T Consensus 268 ~l~~la~~~~~~~li~De~y~~~~~~--------~~~~~~~~~~~~i~~~S~SK~-~g~~G~RiG~l~~~~~~~~~~li~ 338 (533)
T 3f6t_A 268 AIKQAVEKNPKLMIISDEVYGAFVPN--------FKSIYSVVPYNTMLVYSYSKL-FGCTGWRLGVIALNEKNVFDDNIA 338 (533)
T ss_dssp HHHHHHHHCTTCEEEEECTTGGGSTT--------CCCHHHHSGGGEEEEEESHHH-HTCGGGCEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEcCCccccccC--------ccCHhhcCCCCEEEEecCccc-CCCcccceEEEEECcHHHHHHHHH
Confidence 8888888 689999999999876531 111111223567888999998 66666 89888776633221110
Q ss_pred ccccc---------C---CC---c----------cCCCcccCCCCCchHHHHHH----HHHHH--------hHHHHHHHH
Q 009181 371 AVTEW---------S---GG---L----------YVSPTVAGSRPGGLIAGAWA----ALMSL--------GQEGYLENT 413 (541)
Q Consensus 371 ~~~~~---------~---~~---~----------~~~~~~~gsr~~~~~a~~~~----al~~l--------g~~g~~~~~ 413 (541)
..+.| . .. . ........+ +.....+.+ ++..+ .....++..
T Consensus 339 ~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~--~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~ 416 (533)
T 3f6t_A 339 HLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTA--GLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIAR 416 (533)
T ss_dssp TSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGC--SCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHH
T ss_pred hcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhccc--CCChHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Confidence 00000 0 00 0 000000000 111222332 33334 235677888
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecCC-----------------CCHHHHHHHH-HhCCceecc---CCC
Q 009181 414 KAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDV-----------------VDIFEVNDIM-SSKGWHLNP---LQR 472 (541)
Q Consensus 414 ~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~-----------------~~~~~l~~~l-~~~G~~~~~---~~~ 472 (541)
+++.++++++.+.|. + ++.+..+....++++.... .+..++...+ .++|+.+.. ++.
T Consensus 417 ~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~ 494 (533)
T 3f6t_A 417 KLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGA 494 (533)
T ss_dssp HHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECS
T ss_pred HHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCC
Confidence 888899999999997 5 5554433333444444431 2444555555 467876643 222
Q ss_pred -CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 473 -PNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 473 -~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
++++|+|++..+.+++++++++|+++++++.+
T Consensus 495 ~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 495 KPGELRVSQANLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp STTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999877789999999999999988764
No 165
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.89 E-value=3.1e-22 Score=204.75 Aligned_cols=285 Identities=14% Similarity=0.097 Sum_probs=193.1
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCC--eEEecCCccchHHH---HHhhcCCe
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDK---AAQYFNIK 249 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~--~vi~~~~~h~s~~k---a~~~~G~~ 249 (541)
++++++++++|.+.. ++++|||+|+.++++++.. +| + .|+++...|++... .+...|++
T Consensus 51 ~l~~~la~~~~~~~~--------i~~~~G~~a~~~al~~~~~-----~g---d~~~vi~~~~~~~~~~~~~~~~~~~g~~ 114 (357)
T 3lws_A 51 PFEQKFADVLGMDDA--------VFFPSGTMAQQVALRIWSD-----ET---DNRTVAYHPLCHLEIHEQDGLKELHPIE 114 (357)
T ss_dssp HHHHHHHHHHTCSEE--------EEESCHHHHHHHHHHHHHH-----HH---TCCEEEECTTCHHHHSSTTHHHHHSSCE
T ss_pred HHHHHHHHHhCCCcE--------EEecCcHHHHHHHHHHHhh-----cC---CCcEEEecccceeeeeccchhhhccCcE
Confidence 344588899987532 6778899999999998765 33 4 78888888887654 45566999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCC
Q 009181 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH-GIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGY 325 (541)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~-G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~ 325 (541)
++.++. +++.+|+++|+++. ++++|++++|+||+ |.+.+ +++|.++|++||++||+|++|+.....+ .|.
T Consensus 115 ~~~v~~-~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~---~~~ 188 (357)
T 3lws_A 115 TILVGA-ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPY---YEK 188 (357)
T ss_dssp EEECSC-TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH---HTC
T ss_pred EEEecC-CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhh---cCC
Confidence 998885 56789999999984 38999999999998 98875 8899999999999999999986332221 111
Q ss_pred CCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh
Q 009181 326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (541)
Q Consensus 326 ~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg 405 (541)
.. ..+ ..++|+++.++||++.+|.| |+ ++.++++..........+.++. . ..+...++..++++.
T Consensus 189 ~~--~~~-~~~~d~~~~s~sK~~~~~~g-g~-~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~l~~-- 253 (357)
T 3lws_A 189 TA--AEI-AGLFDSIYISFYKGLGGIAG-AI-LAGPAAFCQTARIWKRRYGGDL-I-------SLYPYIVSADYYYEL-- 253 (357)
T ss_dssp CH--HHH-HTTSSEEEEESSSTTCCSSC-EE-EEECHHHHHHHHHHHHHTTCCC-S-------CCHHHHHHHHHHHHH--
T ss_pred Ch--HHH-HhcCCEEEEeccccCCCCce-EE-EEcCHHHHHHHHHHHHHhcCCc-c-------cchHHHHHHHHHHHH--
Confidence 01 111 13467889999999668877 75 4555555433211111111110 0 011111122223321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe-cCCCeeEEEEecCCC---CHHHHHHHHHhCCceeccCC--CCC--eEE
Q 009181 406 QEGYLENTKAIMEVSESIQKGIKEIPELFII-GRPDMTIVAFGSDVV---DIFEVNDIMSSKGWHLNPLQ--RPN--SIH 477 (541)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~~~~~~v~f~~~~~---~~~~l~~~l~~~G~~~~~~~--~~~--~iR 477 (541)
..+..++..++++++.+.|+++|++++. .++..+++++++... +..++.+.|.++|+.+.... .|+ ++|
T Consensus 254 ---~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r 330 (357)
T 3lws_A 254 ---RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTE 330 (357)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEE
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEE
Confidence 3344555678899999999999999984 566778888887653 25688899999998765431 133 789
Q ss_pred EEecCC----CHHHHHHHHHHHHHHH
Q 009181 478 ICVTLQ----HVAVVDVFLRDLRESV 499 (541)
Q Consensus 478 i~~~~~----~~e~id~~i~~L~~~~ 499 (541)
++++.. +.+++++.+++|++++
T Consensus 331 ~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 331 ISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEecchhhhcCHHHHHHHHHHHHHhc
Confidence 988643 2378888888887654
No 166
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.89 E-value=9.8e-22 Score=208.09 Aligned_cols=309 Identities=13% Similarity=0.068 Sum_probs=200.3
Q ss_pred cccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCcc-chHHH
Q 009181 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH-SAYDK 241 (541)
Q Consensus 163 ~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h-~s~~k 241 (541)
+...++..++++ .+++++|.+ + + ++|+|||+|+.++++++. ++| + +++.+.| .++..
T Consensus 71 y~~~~~~~~l~~----~la~~~~~~--~----~--~~~~~gt~a~~~al~~l~-----~~g---d--i~~~~~~~~~~~~ 128 (456)
T 2ez2_A 71 YAGSENFYHLER----TVQELFGFK--H----I--VPTHQGRGAENLLSQLAI-----KPG---Q--YVAGNMYFTTTRY 128 (456)
T ss_dssp SSSCHHHHHHHH----HHHHHHCCS--E----E--EEESSHHHHHHHHHHHHC-----CTT---C--EEEESSCCHHHHH
T ss_pred cccChhHHHHHH----HHHHHhCCC--c----E--EEeCCcHHHHHHHHHHhC-----CCC---C--EeccccccchhHH
Confidence 333555555554 777888765 2 4 899999999999998874 256 6 6777888 88889
Q ss_pred HHhhcCCeEEEeeCCC----------CCccCHHHHHHhhccCc----eEEEeecCCC-CCccccC---HHHHHHHHHHcC
Q 009181 242 AAQYFNIKLWRVPVDK----------EFRADVKAIKKYINRNT----VLIVGSAPGF-PHGIIDP---IQELGELALSHG 303 (541)
Q Consensus 242 a~~~~G~~v~~v~~~~----------~~~~d~~~Le~~i~~~t----~~vv~~~~~~-~~G~id~---i~~I~~la~~~~ 303 (541)
++...|++++.+++++ ++.+|+++|++++++++ ++|++++|+| |+|.+.| +++|+++|++||
T Consensus 129 ~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~ 208 (456)
T 2ez2_A 129 HQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHG 208 (456)
T ss_dssp HHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 9999999999999873 26899999999998776 8999999998 9999877 999999999999
Q ss_pred CEEEEeCCcccchhhhhhhcCCCCCCCCc------CCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCC
Q 009181 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDF------SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG 377 (541)
Q Consensus 304 i~lhvD~a~gg~~~~f~~~~g~~~p~~~~------~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~ 377 (541)
+++|+|++|+.+...|....+.......+ .....|++++++||++..| .+|+++.+++++..........+.+
T Consensus 209 i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
T 2ez2_A 209 IKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEG 287 (456)
T ss_dssp CCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccC
Confidence 99999999975311111110100000000 0012477777899995534 4677666555554322111111111
Q ss_pred CccCCCcccCCCCCchHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEec----CCCC
Q 009181 378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGY-LENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGS----DVVD 452 (541)
Q Consensus 378 ~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~-~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~----~~~~ 452 (541)
. .+..|.... .+.++ ++..+ +.+ ++..++..++++++.+.|++. ++++..+....++++.. .+.+
T Consensus 288 ~----~~~~~~~~~-~~~a~--a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~~~~ 357 (456)
T 2ez2_A 288 M----PSYGGLAGR-DMEAM--AIGLR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEHLT 357 (456)
T ss_dssp C----TTTTTCCHH-HHHHH--HHHHH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTTSC
T ss_pred c----ccccCcchh-HHHHH--HHHHH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcCCCC
Confidence 0 011111111 12221 22111 233 466777788889999999885 77776655566666664 2334
Q ss_pred HHHH-----HHHH-HhCCceeccC----------------CCCCeEEEEecCC--CHHHHHHHHHHHHHHHHHHHc
Q 009181 453 IFEV-----NDIM-SSKGWHLNPL----------------QRPNSIHICVTLQ--HVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 453 ~~~l-----~~~l-~~~G~~~~~~----------------~~~~~iRi~~~~~--~~e~id~~i~~L~~~~~~l~~ 504 (541)
..++ .+.| .++|+.+... ...+.+|++++.. +.+++++++++|++++++...
T Consensus 358 ~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~~ 433 (456)
T 2ez2_A 358 QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 4444 6666 5777643210 1136899999864 459999999999999887654
No 167
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.89 E-value=8.8e-22 Score=205.93 Aligned_cols=297 Identities=15% Similarity=0.135 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHHh--hcC
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQ--YFN 247 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~~--~~G 247 (541)
.+++..++++++++|.+... ++++||++|+..+++++.+ +| ++|+++.+.|++ +...+. ..|
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~-------v~~~~Gs~a~~~al~~~~~-----~g---d~Vi~~~~~~~~~~~~~~~~~~~g 142 (425)
T 3ecd_A 78 EVEALAIERVKRLFNAGHAN-------VQPHSGAQANGAVMLALAK-----PG---DTVLGMSLDAGGHLTHGAKPALSG 142 (425)
T ss_dssp HHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHCC-----TT---CEEEEECC----------------
T ss_pred HHHHHHHHHHHHHhCCCCce-------eecCchHHHHHHHHHHccC-----CC---CEEEEcccccccceecchhhhhcc
Confidence 34554557888999987643 5688999999999988742 66 899999999988 323322 445
Q ss_pred C--eEEEeeCCC-CCccCHHHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhc
Q 009181 248 I--KLWRVPVDK-EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (541)
Q Consensus 248 ~--~v~~v~~~~-~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~ 323 (541)
. +++.++.++ ++.+|+++|+++++ +++++|++++|+| |...++++|.++|++||+++|+|++|+.+... .
T Consensus 143 ~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~--~-- 216 (425)
T 3ecd_A 143 KWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIA--A-- 216 (425)
T ss_dssp --CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHH--T--
T ss_pred cceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhh--c--
Confidence 5 555666653 68899999999997 5899999998887 67899999999999999999999996544331 1
Q ss_pred CCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHH
Q 009181 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS 403 (541)
Q Consensus 324 g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~ 403 (541)
+. ... ....+|+++.++||++.+|. +|+++.+++.+......... +...++.....++++.+++..
T Consensus 217 ~~---~~~-~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~a~~~ 282 (425)
T 3ecd_A 217 GR---HAN-PVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVF---------PGLQGGPLMHVIAGKAVAFGE 282 (425)
T ss_dssp TS---SCC-GGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHH
T ss_pred cc---ccC-chhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhC---------ccccCCccHHHHHHHHHHHHH
Confidence 11 011 11236899999999964554 68777665544332111000 001112222234556666655
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-CCeeEEEEecC--CCCHHHHHHHHHhCCceeccCC---------
Q 009181 404 LGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR-PDMTIVAFGSD--VVDIFEVNDIMSSKGWHLNPLQ--------- 471 (541)
Q Consensus 404 lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~f~~~--~~~~~~l~~~l~~~G~~~~~~~--------- 471 (541)
...+++++..++..++++++.+.|++. ++++..+ ....++++... +.+...+.+.|.++|+.+....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~ 361 (425)
T 3ecd_A 283 ALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPT 361 (425)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCC
Confidence 556788899999999999999999985 8888754 35667777764 3467888999999998765211
Q ss_pred CCCeEEEEecCCC-----HHHHHHHHHHHHHHHHHHH
Q 009181 472 RPNSIHICVTLQH-----VAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 472 ~~~~iRi~~~~~~-----~e~id~~i~~L~~~~~~l~ 503 (541)
.++.+|++++..+ .++++++++.|++++++.+
T Consensus 362 ~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~~ 398 (425)
T 3ecd_A 362 ITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEALR 398 (425)
T ss_dssp TCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccceeccchhheeccCCHHHHHHHHHHHHHHHhccc
Confidence 1257999854332 4899999999999998774
No 168
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.89 E-value=3.8e-22 Score=207.47 Aligned_cols=318 Identities=12% Similarity=0.084 Sum_probs=207.1
Q ss_pred HHHHHHHHhhcc-cCCCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEE--cCcHHHHHHHHHHHHHHHHHh
Q 009181 146 SLINEACSMFAH-TNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNM--TSGGTESILLAVKSSRDYMRN 220 (541)
Q Consensus 146 ~~~~~~~~~~~~-~n~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~--t~Ggt~a~~~al~a~r~~~~~ 220 (541)
+.+.+++..... ....+|....+..++.+.+.+++...+|.+ +++ + ++ |+|||+|+.+++++++...
T Consensus 49 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~----i--~~v~t~G~~~al~~~~~~l~~~~-- 120 (401)
T 7aat_A 49 NCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGR----Y--VTVQGISGTGSLRVGANFLQRFF-- 120 (401)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----E--EEEEEEHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCc----e--EEEecCcchHHHHHHHHHHHHhc--
Confidence 344444444332 122344444566666666666665544432 444 5 55 9999999999998876322
Q ss_pred hcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC--CCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC---H
Q 009181 221 KRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---I 292 (541)
Q Consensus 221 ~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~---i 292 (541)
++| ++|+++.+.|.++...++..|++++.+|++ +++.+|++++++.+. ++++++++++|+||||.+.+ +
T Consensus 121 ~~g---d~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l 197 (401)
T 7aat_A 121 KFS---RDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQW 197 (401)
T ss_dssp TTC---CEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHH
T ss_pred cCC---CEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHH
Confidence 256 899999999999999999999999999985 378999997777665 57899999999999997755 7
Q ss_pred HHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCC--cCCCCceEEEeCCCCCCCCCCC--ceEEEEe--cccc--
Q 009181 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD--FSVQGVTSISVDVHKYGLAPKG--TSVVLYR--NREI-- 364 (541)
Q Consensus 293 ~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~--~~~~gvdsis~~~hK~~~~p~g--~g~ll~~--~~~~-- 364 (541)
++|+++|++||+++++|++|+.+...-.. .. .+.+. .....-.+++.+++|. ++++| +|+++.. +++.
T Consensus 198 ~~i~~~~~~~~~~li~Deay~~~~~~~~~-~~--~~~~~~~~~~~~~~i~~~S~sK~-~~~~G~RiG~l~~~~~~~~~~~ 273 (401)
T 7aat_A 198 KELASVVKKRNLLAYFDMAYQGFASGDIN-RD--AWALRHFIEQGIDVVLSQSYAKN-MGLYGERAGAFTVICRDAEEAK 273 (401)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTTTTSCHH-HH--THHHHHHHHTTCCCEEEEECTTT-SCCGGGCEEEEEEECSSHHHHH
T ss_pred HHHHHHHHhCCcEEEEccccccccCCCcc-cc--HHHHHHHHhcCCcEEEEecCCcc-cccccCceEEEEEEeCCHHHHH
Confidence 89999999999999999999876541000 00 00000 0122336778899999 66666 7987763 3331
Q ss_pred --cccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhhcC---C
Q 009181 365 --RKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIKEI---P 431 (541)
Q Consensus 365 --~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~---~ 431 (541)
..........+.. . ....++.++...+. .+.+++..+++.++++++.+.|+++ +
T Consensus 274 ~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 340 (401)
T 7aat_A 274 RVESQLKILIRPMYS----------N---PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSH 340 (401)
T ss_dssp HHHHHHHHHHHHHHS----------S---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhccC----------C---CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1111100000000 0 01223333332231 3446777888889999999999886 2
Q ss_pred CeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 432 ELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 432 ~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
++++.. |..+++.|. +.+...+...+.++|+.+.. .+|++++..++++++++++.|++++
T Consensus 341 ~~~~~~-~~~~~~~~~--~~~~~~~~~ll~~~gi~v~~-----~~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 341 NWQHIT-DQIGMFCFT--GLKPEQVERLTKEFSIYMTK-----DGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CCHHHH-HCCSSEEEC--CCCHHHHHHHHHHHCEECCT-----TCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred CCceec-CCcceEEec--CCCHHHHHHHHHhCCEeccC-----CCeEEeccCChhhHHHHHHHHHHHh
Confidence 355443 344444443 33455555555677887652 4799999877777999999999875
No 169
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.89 E-value=5.6e-22 Score=208.50 Aligned_cols=319 Identities=13% Similarity=0.083 Sum_probs=213.3
Q ss_pred HHHHHHHHHHhhcccC-CCCcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhc
Q 009181 144 HFSLINEACSMFAHTN-PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR 222 (541)
Q Consensus 144 ~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~ 222 (541)
..+.+.+.+....+.. ...|...++..++++++.+|+.+-++.++++ + ++|+|+++++..+ .++. ++
T Consensus 74 v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~----i--~~t~G~~~al~~l-~~l~-----~~ 141 (432)
T 3ei9_A 74 ITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDD----V--FVSDGAKCDISRL-QVMF-----GS 141 (432)
T ss_dssp HHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGG----E--EEESCHHHHHHHH-HHHH-----CT
T ss_pred HHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcce----E--EECCChHHHHHHH-HHHc-----CC
Confidence 3344444444332212 2234334556777877777776555666654 6 8999999999863 4433 25
Q ss_pred CCCCCeEEecCCccchHHHHHhhcCC------------eEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCcc
Q 009181 223 GITRPEMIIPVSAHSAYDKAAQYFNI------------KLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGI 288 (541)
Q Consensus 223 Gi~~~~vi~~~~~h~s~~ka~~~~G~------------~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~ 288 (541)
| ++|+++.+.|+++..+++..|. +++.+|+++ ++..|+++ .+++++|++++|+||+|.
T Consensus 142 g---d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~ 213 (432)
T 3ei9_A 142 N---VTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGA 213 (432)
T ss_dssp T---CCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCC
T ss_pred C---CEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCC
Confidence 6 8999999999999999988884 688888875 34445332 357889999999999999
Q ss_pred ccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCc-CCCCceEEEeCCCCCCC-CCCCceEEEEeccc
Q 009181 289 IDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNRE 363 (541)
Q Consensus 289 id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~-~~~gvdsis~~~hK~~~-~p~g~g~ll~~~~~ 363 (541)
+.+ +++|+++|++||+++++|++|+.+... .... +...+ ...+.+++..+++|.+. ++..+|+++.+++.
T Consensus 214 ~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~---~~~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~ 288 (432)
T 3ei9_A 214 AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSD---DNPR--SIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKL 288 (432)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS---SCCS--SGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTC
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEccchHhhccC---CCCC--ChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHH
Confidence 876 667888899999999999999877542 1111 00111 12345788899999942 44458987765543
Q ss_pred cc------ccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhhcCCCeE
Q 009181 364 IR------KHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGIKEIPELF 434 (541)
Q Consensus 364 ~~------~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~l---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 434 (541)
.. ...+...... .-.+....++.++...+ +.+.+++..+++.++++++.+.|+++ +++
T Consensus 289 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 355 (432)
T 3ei9_A 289 LYSDGFPVAKDFNRIICT------------CFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYD 355 (432)
T ss_dssp BCTTSCBHHHHHHHHHHH------------SCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred hhcchHHHHHHHHHHhcc------------ccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cce
Confidence 11 0111000000 00011133555555444 33567888999999999999999988 888
Q ss_pred EecCCCeeEEEEecCCCCHHHHHHHHHhC-Cceecc---CC--CCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 435 IIGRPDMTIVAFGSDVVDIFEVNDIMSSK-GWHLNP---LQ--RPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 435 v~~~~~~~~v~f~~~~~~~~~l~~~l~~~-G~~~~~---~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
+..+....++++.+++.+..++.+.|.++ |+.+.. ++ .++++|+|+.. +.+++++++++|++--+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 356 VYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENILEACRRFKQLYKH 427 (432)
T ss_dssp EEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred ecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHhhh
Confidence 88666677888888766777888887765 876543 21 24789999864 569999999999876543
No 170
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.89 E-value=1.3e-21 Score=203.01 Aligned_cols=287 Identities=15% Similarity=0.087 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCcc-chHHHHHhhcCCe
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH-SAYDKAAQYFNIK 249 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h-~s~~ka~~~~G~~ 249 (541)
....++++.+++++|.+.++ + ++|+||++|+..++++++... +| ++|+++++.| .++..++...|.+
T Consensus 87 ~~~~~l~~~la~~~~~~~~~----v--~~~~gg~~a~~~al~~~~~~~---~~---~~vi~~~~~y~~~~~~~~~~~g~~ 154 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELNR----V--FPVNSGTEANEAALKFARAHT---GR---KKFVAAMRGFSGRTMGSLSVTWEP 154 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEEE----E--EEESSHHHHHHHHHHHHHHHH---SC---CEEEEETTCCCCSSHHHHHTCCCH
T ss_pred HHHHHHHHHHHHhcCCCcCE----E--EEcCcHHHHHHHHHHHHHHHh---CC---CeEEEEcCCcCCCchhhhhhcCCc
Confidence 34556777999999876554 5 899999999999999875321 34 7788877765 4566677777765
Q ss_pred ------------EEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccC----HHHHHHHHHHcCCEEEEeCCcc
Q 009181 250 ------------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 250 ------------v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i~lhvD~a~g 313 (541)
+..++. .|+++|++++++++++|+++++++|+|.+.| +++|.++|++||+++|+|++|+
T Consensus 155 ~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~ 229 (395)
T 1vef_A 155 KYREPFLPLVEPVEFIPY-----NDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 229 (395)
T ss_dssp HHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred ccccccCCCCCCeeEeCC-----CcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 333332 4899999999989999998888889999877 9999999999999999999998
Q ss_pred cchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch
Q 009181 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (541)
Q Consensus 314 g~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~ 393 (541)
++.. .|... .++....+.|++++ ||++.+|.++|+++.+++ +...... .+.+. +. +.+...
T Consensus 230 ~~~~-----~g~~~-~~~~~~~~~d~~s~--sK~~~~g~~~G~~~~~~~-~~~~l~~---~~~~~-----~~--~~~~~~ 290 (395)
T 1vef_A 230 GMGR-----TGKRF-AFEHFGIVPDILTL--AKALGGGVPLGVAVMREE-VARSMPK---GGHGT-----TF--GGNPLA 290 (395)
T ss_dssp TTTT-----TSSSS-THHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHH-HHHTSCT---TSSCC-----SS--TTCHHH
T ss_pred CCcc-----CCchh-HhhhcCCCCCEEEE--cccccCCCceEEEEehHH-HHhhhcc---CCcCC-----Cc--CCCHHH
Confidence 6432 11100 11111223577654 899777778998887764 3322111 11111 00 011112
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCC--eEEecCCCeeEEEEecCCCCHHHHHHHHH-hCCceeccC
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPE--LFIIGRPDMTIVAFGSDVVDIFEVNDIMS-SKGWHLNPL 470 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~--~~v~~~~~~~~v~f~~~~~~~~~l~~~l~-~~G~~~~~~ 470 (541)
.+++.++++.+.. .+..++..++++++.+.|++++. +... ++..+++++.+++ +..++.+.|. ++|+.+...
T Consensus 291 ~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~l~~~l~~~~gi~v~~~ 365 (395)
T 1vef_A 291 MAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREV-RGMGLMVGLELKE-KAAPYIARLEKEHRVLALQA 365 (395)
T ss_dssp HHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EEETTEEEEEESS-CSHHHHHHHHHHHCEECEES
T ss_pred HHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEE-EEEEEEEEEEEcC-hHHHHHHHHHHHCCeEEecC
Confidence 3344455554432 45678888899999999988642 2211 2345677777754 3678899998 899877653
Q ss_pred CCCCeEEEEecCCCH-HHHHHHHHHHHHHH
Q 009181 471 QRPNSIHICVTLQHV-AVVDVFLRDLRESV 499 (541)
Q Consensus 471 ~~~~~iRi~~~~~~~-e~id~~i~~L~~~~ 499 (541)
.++++|++++..++ +++++++++|++++
T Consensus 366 -~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 366 -GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp -STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 35789999876554 99999999998875
No 171
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.81 E-value=7.3e-25 Score=227.56 Aligned_cols=303 Identities=12% Similarity=0.069 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHHHhCC--CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhc
Q 009181 169 VARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF 246 (541)
Q Consensus 169 ~~~~e~ev~~~la~l~g~--~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~ 246 (541)
..++++++.+++.+.+|. ++++ + ++|+|+++|+.++++++.+ +| ++|+++.+.|+++..+++..
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~----v--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~p~~~~~~~~~~~~ 133 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKED----I--VFVEGVVPAISIAIQAFTK-----EG---EAVLINSPVYPPFARSVRLN 133 (392)
Confidence 567777788888887784 4443 6 8999999999999999854 55 88999999999999999999
Q ss_pred CCeEEEeeCC-C--CCccCHHHHHHhhc-cCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 247 NIKLWRVPVD-K--EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 247 G~~v~~v~~~-~--~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
|++++.+|.+ + ++.+|+++|+++++ +++++|++++|+||+|.+.+ +++|.++|++||+++++|++|+++...
T Consensus 134 g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~- 212 (392)
T 3b1d_A 134 NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF- 212 (392)
Confidence 9999999985 3 36799999999998 67889999999999999865 899999999999999999999887642
Q ss_pred hhhcCCCCCCCCcCC--CCceEEEeCCCCCCC-CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHH
Q 009181 320 AKKLGYPIPPFDFSV--QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG 396 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~--~gvdsis~~~hK~~~-~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~ 396 (541)
..+. .+-..+.. .+.+++..+++|.+. ++..+|+++.+++++..........|..+ + .+.. ..++
T Consensus 213 --g~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~--~~~a 280 (392)
T 3b1d_A 213 --GHEH-VSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHH---E----VSSL--GYIA 280 (392)
Confidence 1010 11111111 345677888999953 44568988876664543322111111000 0 0100 0112
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEecCCCeeEEEEecCC--CCHHHHHHHHH-hCCceeccC--
Q 009181 397 AWAALMSLGQEGYLENTKAIMEVSESIQKGIKE-IPELFIIGRPDMTIVAFGSDV--VDIFEVNDIMS-SKGWHLNPL-- 470 (541)
Q Consensus 397 ~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~v~~~~~~~~v~f~~~~--~~~~~l~~~l~-~~G~~~~~~-- 470 (541)
+.+++. .+.+.+++..++..++++++.+.|++ +|++++..+....++++.++. .+..++.+.|. ++|+.+...
T Consensus 281 ~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~ 359 (392)
T 3b1d_A 281 TETAYR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSD 359 (392)
Confidence 223333 23456778888889999999999988 788887654333344456543 35667888886 789766432
Q ss_pred -C--CCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 471 -Q--RPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 471 -~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
+ .++++|++++. +.+++++++++|+++++
T Consensus 360 f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 360 YGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 1 24689999875 35889999999988764
No 172
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.89 E-value=5e-22 Score=210.52 Aligned_cols=280 Identities=15% Similarity=0.166 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHH----HhhcC
Q 009181 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFN 247 (541)
Q Consensus 172 ~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka----~~~~G 247 (541)
...++++++++++|.+ + + ++++||++|+..++. +. ++| ++|+++.+.|+++... ++.+|
T Consensus 134 ~~~~l~~~la~~~g~~--~----~--i~~~sGt~al~~~l~-~~-----~~G---d~Vi~~~~~y~~~~~~~~~~~~~~G 196 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD--R----A--FCFTSGMAALSAVTH-LI-----KNG---EEIVAGDDVYGGSDRLLSQVVPRSG 196 (464)
T ss_dssp HHHHHHHHHHHHHTCS--E----E--EEESSHHHHHHHHHT-TS-----CTT---CEEEEESSCCHHHHHHHHHTSGGGT
T ss_pred HHHHHHHHHHHHhCCC--e----E--EEECCHHHHHHHHHH-Hh-----CCC---CEEEEECCCchhHHHHHHHHHHHcC
Confidence 4556888999999975 2 3 677888999877664 21 256 8999999999998754 56789
Q ss_pred CeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCC
Q 009181 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI 327 (541)
Q Consensus 248 ~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~ 327 (541)
++++.+|.+ |+++|+++++++|++|++++|+||+|.+.|+++|+++|++||+++|+|++|+.+.. .
T Consensus 197 ~~v~~v~~~-----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~---------~ 262 (464)
T 1ibj_A 197 VVVKRVNTT-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL---------S 262 (464)
T ss_dssp CEEEEECTT-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT---------C
T ss_pred CEEEEeCCC-----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCccccc---------C
Confidence 999999975 89999999999999999999999999999999999999999999999999964322 1
Q ss_pred CCCCcCCCCceEEEeCCCCCCCCCCCc--eEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh
Q 009181 328 PPFDFSVQGVTSISVDVHKYGLAPKGT--SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (541)
Q Consensus 328 p~~~~~~~gvdsis~~~hK~~~~p~g~--g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg 405 (541)
.+++ .|+|+++.++||++++|.|+ |+++.+++++........ ...++. . ...++|+++..+.
T Consensus 263 ~~~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~-~~~g~~----------~--~~~~~~a~~~al~ 326 (464)
T 1ibj_A 263 RPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ-NSEGSG----------L--APFDCWLCLRGIK 326 (464)
T ss_dssp CGGG---TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH-HHTTCB----------C--CHHHHHHHHHHHT
T ss_pred Chhh---cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHH-HhcCCC----------C--CHHHHHHHHhchh
Confidence 1222 47899999999997777765 887776544433221111 001110 0 1335666665543
Q ss_pred H--HHHHHHHHHHHHHHHHHHH----------HhhcCCCeEEecCC---CeeEEEEecCCCC-HHHHHHHHHhCCceecc
Q 009181 406 Q--EGYLENTKAIMEVSESIQK----------GIKEIPELFIIGRP---DMTIVAFGSDVVD-IFEVNDIMSSKGWHLNP 469 (541)
Q Consensus 406 ~--~g~~~~~~~~~~~a~~l~~----------~L~~~~~~~v~~~~---~~~~v~f~~~~~~-~~~l~~~l~~~G~~~~~ 469 (541)
. ..+++..+....+++++.+ .|+++|++++..+. ..++++|.+.+.+ ..++.+.|...|+.+..
T Consensus 327 ~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~ 406 (464)
T 1ibj_A 327 TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSF 406 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecC
Confidence 1 2344444444444455543 34445666655443 2568889875321 23466666555432211
Q ss_pred -------------------------CCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 470 -------------------------LQR-PNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 470 -------------------------~~~-~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
.+. ++.+|++++. +++++++++|++++++
T Consensus 407 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 407 GSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp CSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 112 4689999997 8899999999998753
No 173
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.89 E-value=7.5e-21 Score=198.67 Aligned_cols=273 Identities=12% Similarity=0.082 Sum_probs=188.6
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH----hhcCCeE
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNIKL 250 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~----~~~G~~v 250 (541)
++++.+++++|.+. . ++++||++|+.++++++. ++| ++|+++.+.|.+....+ +..|+++
T Consensus 86 ~le~~lA~l~g~~~------~--i~~ssGt~Ai~~al~~l~-----~~G---d~Vi~~~~~y~~~~~~~~~~l~~~G~~v 149 (415)
T 2fq6_A 86 SLQQAMCELEGGAG------C--VLFPCGAAAVANSILAFI-----EQG---DHVLMTNTAYEPSQDFCSKILSKLGVTT 149 (415)
T ss_dssp HHHHHHHHHHTCSE------E--EEESSHHHHHHHHHHTTC-----CTT---CEEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred HHHHHHHHHhCCCe------E--EEeCCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHHcCcEE
Confidence 34558888998752 2 677889999999998764 266 89999999999876554 4579999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHH--cCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~--~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
+.++.+ |+++++++|+++|++|++++|+||+|.+.|+++|+++|++ +|+++|+|++|+.++. ..
T Consensus 150 ~~v~~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~---------~~ 215 (415)
T 2fq6_A 150 SWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL---------FK 215 (415)
T ss_dssp EEECTT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---------SC
T ss_pred EEECCC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc---------CC
Confidence 999875 8999999999999999999999999999999999999999 9999999999875421 11
Q ss_pred CCCcCCCCceEEEeCCCCCCCCCCC---ceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh
Q 009181 329 PFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (541)
Q Consensus 329 ~~~~~~~gvdsis~~~hK~~~~p~g---~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg 405 (541)
++ ..|+|+++.++||+ ++|.| .|+++.+ +++........ .. .|.... ...+|.+++ +
T Consensus 216 p~---~~g~Div~~S~sK~-lg~~g~~~~G~l~~~-~~~~~~l~~~~-~~----------~G~~~~--~~~a~~~~~--~ 275 (415)
T 2fq6_A 216 AL---DFGIDVSIQAATKY-LVGHSDAMIGTAVCN-ARCWEQLRENA-YL----------MGQMVD--ADTAYITSR--G 275 (415)
T ss_dssp GG---GGTCSEEEEETTTT-TTCSSSCCCEEEEEC-TTTHHHHHHHH-HH----------TTCCCC--HHHHHHHHH--H
T ss_pred cc---ccCCeEEEEeCccc-cCCCCCceEEEEEeC-HHHHHHHHHHH-Hh----------cCCCCC--HHHHHHHHh--h
Confidence 22 34789999999999 45554 5766654 44332211110 00 111111 224555543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe-cC----------------CCeeEEEEecCCC----CHHHHHHHHHhCC
Q 009181 406 QEGYLENTKAIMEVSESIQKGIKEIPELFII-GR----------------PDMTIVAFGSDVV----DIFEVNDIMSSKG 464 (541)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~----------------~~~~~v~f~~~~~----~~~~l~~~l~~~G 464 (541)
.+.+....++..++++++++.|++.|.+.-+ .+ ...++++|.+++. +...+.+.+...+
T Consensus 276 l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~ 355 (415)
T 2fq6_A 276 LRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS 355 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCe
Confidence 4566777788888899999999888776533 11 1367899998752 2333333332111
Q ss_pred ce----------e---c----------cCCC-CCeEEEEecCCCH-HHHHHHHHHHHH
Q 009181 465 WH----------L---N----------PLQR-PNSIHICVTLQHV-AVVDVFLRDLRE 497 (541)
Q Consensus 465 ~~----------~---~----------~~~~-~~~iRi~~~~~~~-e~id~~i~~L~~ 497 (541)
+. . + ..+. ++.+|+|++..++ ++++.+.++|++
T Consensus 356 ~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 356 MAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp ECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred EeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 00 0 0 1222 3789999999887 667777776653
No 174
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.89 E-value=4.4e-21 Score=202.14 Aligned_cols=296 Identities=15% Similarity=0.089 Sum_probs=194.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHH----hhcCCCCCeEEecCCccchHHHHHhhcCCe
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR----NKRGITRPEMIIPVSAHSAYDKAAQYFNIK 249 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~----~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~ 249 (541)
.++++.+++++|.+ . + +++++||+|+.++++++..+.. .++| ++|+++.++|+++..+++..|++
T Consensus 65 ~~l~~~la~~~g~~--~----~--i~~~sGt~a~~~al~~l~~~~~~~~~~~~g---d~Vi~~~~~~~~~~~~~~~~g~~ 133 (437)
T 3bb8_A 65 DAFEKKLGEYLGVP--Y----V--LTTTSGSSANLLALTALTSPKLGVRALKPG---DEVITVAAGFPTTVNPTIQNGLI 133 (437)
T ss_dssp HHHHHHHHHHHTCS--E----E--EEESCHHHHHHHHHHHTTCGGGGGGSCCTT---CEEEECSSSCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCC--c----E--EEeCCHHHHHHHHHHHhhhcccccccCCCc---CEEEECCCCcHHHHHHHHHcCCE
Confidence 34566888899886 2 3 7889999999999998731000 1245 89999999999999999999999
Q ss_pred EEEeeCCC-CCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCC
Q 009181 250 LWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (541)
Q Consensus 250 v~~v~~~~-~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p 328 (541)
++.+++++ ++.+|+++|+++++++|++|++++ ++|...|+++|.++|+++|+++|+|++|+.+..+
T Consensus 134 ~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~---------- 200 (437)
T 3bb8_A 134 PVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTY---------- 200 (437)
T ss_dssp EEECCEETTTTEECGGGHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE----------
T ss_pred EEEEeccCccCCcCHHHHHHhcCCCCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceE----------
Confidence 99999986 799999999999999999999876 3677899999999999999999999999744332
Q ss_pred CCCcCCCC--ceEEEeC---CCCCCCCCCCceEEEEecccccccccccccccCCC-------------------------
Q 009181 329 PFDFSVQG--VTSISVD---VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG------------------------- 378 (541)
Q Consensus 329 ~~~~~~~g--vdsis~~---~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~------------------------- 378 (541)
+....| .|+++.+ .||+ .+ ..+|+++.+++.+... ......|..+
T Consensus 201 --~~~~~~~~~d~~~~s~~~~k~l-~~-g~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (437)
T 3bb8_A 201 --DGKMAGTFGDIGTVSFYPAKHI-TM-GEGGAVFTQSAELKSI-IESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFG 275 (437)
T ss_dssp --TTEETTSSSSEEEEECSTTSSS-CC-SSCEEEEESCHHHHHH-HHHHHBTTBCC----------------CCSCCCTT
T ss_pred --CCeecccccCEEEEECcCCcCC-CC-CCeEEEEeCCHHHHHH-HHHHHHhCccccccccccccccccccccccccccc
Confidence 001112 3565554 4554 22 2346544443332221 1001111100
Q ss_pred --ccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC------Ce--eEEEEec
Q 009181 379 --LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP------DM--TIVAFGS 448 (541)
Q Consensus 379 --~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~------~~--~~v~f~~ 448 (541)
...++...|.+.+..-..+.+++..+ +.+.+..++..++++++.+.|++++++.++... .. .++.|..
T Consensus 276 ~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 353 (437)
T 3bb8_A 276 YDHKYTYSHLGYNLKITDMQAACGLAQL--ERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKE 353 (437)
T ss_dssp CCGGGCBCSCCCBCCCBHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECG
T ss_pred ccccccccccCcccCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECC
Confidence 00011112222221222333333333 344667777788999999999998887765321 11 1334544
Q ss_pred C-CCCHHHHHHHHHhCCceeccCCC------C---------------------CeEEEEecCCCH-HHHHHHHHHHHHHH
Q 009181 449 D-VVDIFEVNDIMSSKGWHLNPLQR------P---------------------NSIHICVTLQHV-AVVDVFLRDLRESV 499 (541)
Q Consensus 449 ~-~~~~~~l~~~l~~~G~~~~~~~~------~---------------------~~iRi~~~~~~~-e~id~~i~~L~~~~ 499 (541)
+ +.+..++.+.|.++|+.+..... | +.+|++++..++ +|++++++.|++++
T Consensus 354 ~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~ 433 (437)
T 3bb8_A 354 DSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFF 433 (437)
T ss_dssp GGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred cCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 3 34788999999999976543211 1 248998887766 99999999998875
Q ss_pred H
Q 009181 500 E 500 (541)
Q Consensus 500 ~ 500 (541)
+
T Consensus 434 ~ 434 (437)
T 3bb8_A 434 G 434 (437)
T ss_dssp T
T ss_pred c
Confidence 3
No 175
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.88 E-value=1.7e-21 Score=199.32 Aligned_cols=286 Identities=13% Similarity=0.108 Sum_probs=192.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCe--EEecCCccchHHH---HHhhcCC
Q 009181 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE--MIIPVSAHSAYDK---AAQYFNI 248 (541)
Q Consensus 174 ~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~--vi~~~~~h~s~~k---a~~~~G~ 248 (541)
.++++++++++|.+.. ++++||++|+.++++++.. +| ++ |+++.+.|+.... .+...|+
T Consensus 51 ~~l~~~la~~~~~~~~--------i~~~~g~~a~~~a~~~~~~-----~g---~~~vvi~~~~~~~~~~~~~~~~~~~g~ 114 (359)
T 3pj0_A 51 EDFETKIAKILGKQSA--------VFFPSGTMAQQIALRIWAD-----RK---ENRRVAYHPLSHLEIHEQDGLKELQQI 114 (359)
T ss_dssp HHHHHHHHHHHTCSEE--------EEESCHHHHHHHHHHHHHH-----HH---TCCEEEECTTCHHHHSSTTHHHHHHCC
T ss_pred HHHHHHHHHHhCCCcE--------EEeCCHHHHHHHHHHHHHh-----cC---CCcEEEEeccceeeehhcchHHHhcCc
Confidence 3456688999988642 6778999999999998865 33 44 6677777776543 2356799
Q ss_pred eEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCC-ccccCHH---HHHHHHHHcCCEEEEeCCcccchhhhhhhcC
Q 009181 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH-GIIDPIQ---ELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (541)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~-G~id~i~---~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g 324 (541)
+++.+|. +++.+|+++|+++ .+++++|++++|+||+ |.+.|.+ +|.++|++||++||+|++|..+..++ .+
T Consensus 115 ~~~~v~~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~---~~ 189 (359)
T 3pj0_A 115 TPLLLGT-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPF---YQ 189 (359)
T ss_dssp EEEECSC-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHH---HT
T ss_pred eEEecCC-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhh---hC
Confidence 9999987 5688999999999 7889999999999888 7887755 55999999999999999986554321 12
Q ss_pred CCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHH
Q 009181 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL 404 (541)
Q Consensus 325 ~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~l 404 (541)
. +..++ ..++|+++.++||++.+|.| | +++.++++..........+.++. . ..+...++..++++.
T Consensus 190 ~--~~~~~-~~~~d~~~~s~sK~~~~~~g-g-~~~~~~~l~~~~~~~~~~~~~~~-~-------~~~~~~~a~~~~l~~- 255 (359)
T 3pj0_A 190 K--SAEEI-CALFDSVYVSFYKGIGGIAG-A-ILAGNDDFVQEAKIWKRRYGGDL-I-------SLYPYILSADYYFEK- 255 (359)
T ss_dssp C--CHHHH-HTTCSEEEEESSSTTCCSSC-E-EEEECHHHHHHHHHHHHHTTCCC-S-------CCHHHHHHHHHHHHH-
T ss_pred C--CHHHh-hccCCEEEEeccccCCCcce-E-EEECCHHHHHHHHHHHHHhCCCc-c-------hhHHHHHHHHHHHHH-
Confidence 1 11111 14668888899998667755 5 45566655443211111111110 0 011111122223321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe-cCCCeeEEEEecCCC---CHHHHHHHHHhCCceeccCC-----CCCe
Q 009181 405 GQEGYLENTKAIMEVSESIQKGIKEIPELFII-GRPDMTIVAFGSDVV---DIFEVNDIMSSKGWHLNPLQ-----RPNS 475 (541)
Q Consensus 405 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~-~~~~~~~v~f~~~~~---~~~~l~~~l~~~G~~~~~~~-----~~~~ 475 (541)
..+..++..++++++.+.|+++|++++. .++..+++++.+... +..++.+.|.++|+.+.... ..++
T Consensus 256 ----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~ 331 (359)
T 3pj0_A 256 ----RIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCA 331 (359)
T ss_dssp ----HGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEE
T ss_pred ----HHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceE
Confidence 1355666788899999999999999986 456677777776543 35788899999998765432 1257
Q ss_pred EEEEecCC----CHHHHHHHHHHHHHH
Q 009181 476 IHICVTLQ----HVAVVDVFLRDLRES 498 (541)
Q Consensus 476 iRi~~~~~----~~e~id~~i~~L~~~ 498 (541)
+|++++.. +.+++++.+++|++.
T Consensus 332 ~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 332 FEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred EEEEecCccccCCHHHHHHHHHHHHhc
Confidence 89988632 337788888777664
No 176
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.88 E-value=8.1e-22 Score=208.51 Aligned_cols=318 Identities=13% Similarity=0.126 Sum_probs=204.5
Q ss_pred HHHHHHHHHHhhc---ccCCCCcccchHHHHHHHHHHHHHHHHhCCC-----CCCCCCccceEE--cCcHHHHHHHHHHH
Q 009181 144 HFSLINEACSMFA---HTNPLHLDIFQSVARFEAEVIAMTAALLGNK-----EKASGGQVCGNM--TSGGTESILLAVKS 213 (541)
Q Consensus 144 ~~~~~~~~~~~~~---~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~-----~~~~~~~v~G~~--t~Ggt~a~~~al~a 213 (541)
..+.+.+++.... ......|...++..++.+++.+++ +|.+ +++ + ++ |+|||+|+.++...
T Consensus 68 v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~----i--~~~~t~ggt~al~l~~~~ 138 (448)
T 3meb_A 68 ILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKDSKAAQEGR----I--ASCQSLSGTGSLHIGFEF 138 (448)
T ss_dssp CCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTTCHHHHTTC----E--EEEEESHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCCccccCcCc----E--EEEECCcHHHHHHHHHHH
Confidence 4455555544333 122234444455555555444443 3765 344 6 77 99999999885543
Q ss_pred HHHHHHhhcCCCCCeEEecCCccchHHHHHh----hcCCeEEEeeC-CCC--CccCHHHHHHhhcc---CceEEEeecCC
Q 009181 214 SRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ----YFNIKLWRVPV-DKE--FRADVKAIKKYINR---NTVLIVGSAPG 283 (541)
Q Consensus 214 ~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~----~~G~~v~~v~~-~~~--~~~d~~~Le~~i~~---~t~~vv~~~~~ 283 (541)
... . .+| ++|+++.++|+++...++ ..|++++.+|+ +++ +.+|+++|++++++ +++++++++|+
T Consensus 139 ~~~-~--~~g---d~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~ 212 (448)
T 3meb_A 139 LHL-W--MPK---AEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAH 212 (448)
T ss_dssp HHH-H--CTT---CCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSC
T ss_pred HHH-h--CCC---CEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 221 1 255 899999999999999999 99999999998 554 89999999999984 58899999999
Q ss_pred CCCccccC---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCC-c-CCCCceEEEeCCCCCCCCCCC--ceE
Q 009181 284 FPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGLAPKG--TSV 356 (541)
Q Consensus 284 ~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~-~-~~~gvdsis~~~hK~~~~p~g--~g~ 356 (541)
||||.+.+ +++|+++|++||+++++|++|+++...-... . .+.++ + ....-.+++.++||. ++++| +|+
T Consensus 213 NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~-~--~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~RiG~ 288 (448)
T 3meb_A 213 NPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEA-D--AFAVRMFVDAGVEVLVAQSFSKN-FGLYGERIGC 288 (448)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHH-H--THHHHHHHHTTCCEEEEEECTTT-SCCGGGCCEE
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCccc-C--chhHHHHhhcCCcEEEEeccccc-CCCcccccee
Confidence 99999977 5569999999999999999998765310000 0 00000 0 011124667899999 66665 787
Q ss_pred E--EE--------ecc----cccccccc-cccccCCCccCCCcccCCCCCchHHHHHHHHHHHhH--------HHHHHHH
Q 009181 357 V--LY--------RNR----EIRKHQFV-AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ--------EGYLENT 413 (541)
Q Consensus 357 l--l~--------~~~----~~~~~~~~-~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~--------~g~~~~~ 413 (541)
+ +. .++ .+...... ....| ......+++++...+.. +.+++..
T Consensus 289 l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------------~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~ 354 (448)
T 3meb_A 289 LHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTW--------------SMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMS 354 (448)
T ss_dssp EEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTT--------------SSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCCHHHHHHHHHHHHHHHhccc--------------CCccHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 6 44 343 22221110 00001 01112345554444432 3467888
Q ss_pred HHHHHHHHHHHHHhhcC--CC------eEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH
Q 009181 414 KAIMEVSESIQKGIKEI--PE------LFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV 485 (541)
Q Consensus 414 ~~~~~~a~~l~~~L~~~--~~------~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~ 485 (541)
+++.++++++.+.|+++ ++ +.... |..+++.|. +.+...+...+.+.|+.+..- ..|+|++..++
T Consensus 355 ~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~ll~~~gV~v~~G----~gRis~a~~~~ 427 (448)
T 3meb_A 355 ARIHRMRSLLHASLAKRKTPGPGSKGTWDHIL-TAIGMFTFT--GLTPEHVDYLKEKWSIYLVKA----GGRMSMCGLTE 427 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHH-HCCSSEEEC--CCCHHHHHHHHHHHCEEECSG----GGEEEGGGCCT
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCcccccceeC-CCceEEEec--CCCHHHHHHHHHhCCEEEeCC----CcEEEEecCCH
Confidence 88999999999999886 55 44443 334444443 223333334446678876541 23999987677
Q ss_pred HHHHHHHHHHHHHHHH
Q 009181 486 AVVDVFLRDLRESVET 501 (541)
Q Consensus 486 e~id~~i~~L~~~~~~ 501 (541)
+++++++++|+++++.
T Consensus 428 ~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 428 SNCDYVAEAIHDAVTK 443 (448)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999999874
No 177
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.88 E-value=2.4e-21 Score=200.20 Aligned_cols=300 Identities=14% Similarity=0.098 Sum_probs=199.9
Q ss_pred hHHHHHHHHHHHHH-HHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHH-HHHHHhhcCCCCCeEEecCCccchHHHHHh
Q 009181 167 QSVARFEAEVIAMT-AALLGNKEKASGGQVCGNMTSGGTESILLAVKSS-RDYMRNKRGITRPEMIIPVSAHSAYDKAAQ 244 (541)
Q Consensus 167 ~~~~~~e~ev~~~l-a~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~-r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~ 244 (541)
|...++|+ .+ ++++|... . + ++|+|||+|+.++++++ . ++| ++|+++.+.|+++..++.
T Consensus 36 ~~~~~l~~----~~~a~~~g~~~-~----~--v~~~sgt~al~~al~~l~~-----~~G---d~Vi~~~~~~~~~~~~~~ 96 (377)
T 3ju7_A 36 PINQRFEQ----TIMSGFFQNRG-A----V--TTVANATLGLMAAIQLKKR-----KKG---KYALMPSFTFPATPLAAI 96 (377)
T ss_dssp HHHHHHHH----HHHHHTSTTCS-E----E--EEESCHHHHHHHHHHHHSC-----TTC---CEEEEESSSCTHHHHHHH
T ss_pred HHHHHHHH----HHHHHHhCCCC-e----E--EEeCCHHHHHHHHHHHcCC-----CCc---CEEEECCCCcHHHHHHHH
Confidence 55555555 77 88888322 2 3 89999999999999886 3 367 999999999999999999
Q ss_pred hcCCeEEEeeCC-CCCccCHHHHHHhh-ccC--ceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhh
Q 009181 245 YFNIKLWRVPVD-KEFRADVKAIKKYI-NRN--TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (541)
Q Consensus 245 ~~G~~v~~v~~~-~~~~~d~~~Le~~i-~~~--t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~ 320 (541)
..|++++.++++ +++.+|++++++++ +++ |++|+ +++++|.+.|+++|.++|+ ||+++|+|++++.+...
T Consensus 97 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~-- 170 (377)
T 3ju7_A 97 WCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMN-- 170 (377)
T ss_dssp HTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEE--
T ss_pred HcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeE--
Confidence 999999999998 48899999999998 667 88887 5667999999999999999 99999999998644321
Q ss_pred hhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEeccccccccccccc-ccCCCccCCCcccCCCCCchHHHHHH
Q 009181 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLYVSPTVAGSRPGGLIAGAWA 399 (541)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gsr~~~~~a~~~~ 399 (541)
. +. +.......++.+|+++||++.+ ...|+++.+++++......... .+.. .+ .....|.+.+..-..++.
T Consensus 171 ~--~~---~~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~~~~~~~~~g~~~-~~-~~~~~g~~~~~~~~~aa~ 242 (377)
T 3ju7_A 171 G--GM---HYGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNEEDIQRIKRMGNFGFDT-NR-ECTMMGFNCKMSEYAAAI 242 (377)
T ss_dssp T--TE---ETTTTCSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHTBTTBCT-TS-CBCSSCCBCCCCHHHHHH
T ss_pred C--CE---eccCCCCcEEEEECCCCCcCCC-CCcEEEEECCHHHHHHHHHHHhcCCCC-CC-ceeeccccCCCCHHHHHH
Confidence 0 00 0100113467888889999544 4566666666654432211111 1100 00 112223333322223333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEE-ecCCC-----eeEEEEecCCC-CHHHHHHHHHhCCceeccCC-
Q 009181 400 ALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFI-IGRPD-----MTIVAFGSDVV-DIFEVNDIMSSKGWHLNPLQ- 471 (541)
Q Consensus 400 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v-~~~~~-----~~~v~f~~~~~-~~~~l~~~l~~~G~~~~~~~- 471 (541)
++ .+.+.+.+..++..++++++.+.|++++++.+ +.++. ..++.+..++. +..++.+.|.++|+.+...-
T Consensus 243 ~~--~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~ 320 (377)
T 3ju7_A 243 GI--ATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFS 320 (377)
T ss_dssp HH--HHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTS
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHCCCceecccC
Confidence 33 34467788899999999999999998865422 11111 12345555432 48899999999996442210
Q ss_pred ----------------CC-------CeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 472 ----------------RP-------NSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 472 ----------------~~-------~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
.| ..+|+.+....+ +|++++++.|++++..
T Consensus 321 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 321 PSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp SCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred CccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 11 467887765544 9999999999887754
No 178
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.88 E-value=1.5e-21 Score=202.77 Aligned_cols=275 Identities=14% Similarity=0.126 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH----HHhhcCC
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNI 248 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k----a~~~~G~ 248 (541)
..++++.+++++|.+ .. +++++||+|+.++++ +. ++| ++|+++.+.|++... .++..|+
T Consensus 57 ~~~lr~~la~~~g~~-~~-------i~~~sGt~a~~~al~-~~-----~~g---d~Vi~~~~~y~~~~~~~~~~~~~~G~ 119 (393)
T 1n8p_A 57 RENLERAVAALENAQ-YG-------LAFSSGSATTATILQ-SL-----PQG---SHAVSIGDVYGGTHRYFTKVANAHGV 119 (393)
T ss_dssp HHHHHHHHHHHTTCS-EE-------EEESCHHHHHHHHHH-TS-----CSS---CEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred HHHHHHHHHHHhCCC-cE-------EEECChHHHHHHHHH-Hc-----CCC---CEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 334666899999987 22 455556999999998 53 256 899999999986544 4567799
Q ss_pred eEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHc----CCEEEEeCCcccchhhhhhhcC
Q 009181 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH----GTCLHVDLCLGGFVLPFAKKLG 324 (541)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~----~i~lhvD~a~gg~~~~f~~~~g 324 (541)
+++.+|++ | ++++++++++|++|++++|+||+|.+.|+++|+++|++| |+++|+|++|+.+...
T Consensus 120 ~v~~v~~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~------ 187 (393)
T 1n8p_A 120 ETSFTNDL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS------ 187 (393)
T ss_dssp CCEEESSH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC------
T ss_pred EEEEeCCC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC------
Confidence 99999886 7 999999999999999999999999999999999999999 9999999999876541
Q ss_pred CCCCCCCcCCCCceEEEeCCCCCCCCCCC--c-eEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHH
Q 009181 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKG--T-SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (541)
Q Consensus 325 ~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~-g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al 401 (541)
.++ ..|+|+++.++||+ ++|.| . |+++.+++++.......... .|.+.. ...+++++
T Consensus 188 ---~~~---~~~~di~~~S~sK~-~g~~G~rigG~~~~~~~~~~~~l~~~~~~-----------~g~~~~--~~~~~~~~ 247 (393)
T 1n8p_A 188 ---NPL---NFGADIVVHSATKY-INGHSDVVLGVLATNNKPLYERLQFLQNA-----------IGAIPS--PFDAWLTH 247 (393)
T ss_dssp ---CGG---GGTCSEEEEETTTT-TTCSSCCCCEEEEESCHHHHHHHHHHHHH-----------HCCCCC--HHHHHHHH
T ss_pred ---CHH---HcCCeEEEEECccc-ccCCCCceeEEEEeCCHHHHHHHHHHHHh-----------cCCCCC--HHHHHHHH
Confidence 012 23689999999998 67777 6 77666555543322111111 112222 22455544
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCC-eEEe-cC-----C------------C-eeEEEEecCCC--CHHHHHHH
Q 009181 402 MSLGQEGYLENTKAIMEVSESIQKGIKEIPE-LFII-GR-----P------------D-MTIVAFGSDVV--DIFEVNDI 459 (541)
Q Consensus 402 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~v~-~~-----~------------~-~~~v~f~~~~~--~~~~l~~~ 459 (541)
..+ +.+....++..++++++.+.|++.+. +.-+ .+ + . .++++|.+++. +...+.+.
T Consensus 248 ~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~ 325 (393)
T 1n8p_A 248 RGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASS 325 (393)
T ss_dssp HHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHH
T ss_pred hcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhh
Confidence 333 34566677777888888888888766 5432 11 1 2 67889988653 34445555
Q ss_pred HHhCCcee-------------------------ccCCC-CCeEEEEecCCCH-HHHHHHHHHHHHH
Q 009181 460 MSSKGWHL-------------------------NPLQR-PNSIHICVTLQHV-AVVDVFLRDLRES 498 (541)
Q Consensus 460 l~~~G~~~-------------------------~~~~~-~~~iRi~~~~~~~-e~id~~i~~L~~~ 498 (541)
+...++.+ ...+. ++.+|+|++..++ ++++.+.++|+++
T Consensus 326 l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 326 TRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp CSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 43322110 01122 3789999999888 7788888887764
No 179
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.88 E-value=1.9e-21 Score=206.54 Aligned_cols=312 Identities=15% Similarity=0.083 Sum_probs=198.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCe---EEecCCcc-chHHH
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE---MIIPVSAH-SAYDK 241 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~---vi~~~~~h-~s~~k 241 (541)
.++..++ ++++++++|.+ + + ++|+|||+|+.+++++++++.. .+| ++ |+++ ..| .++..
T Consensus 75 ~~~~~~l----~~~la~~~~~~--~----v--~~t~ggt~A~~~al~~~~~~~~-~~G---d~~~~viv~-~~~~~~~~~ 137 (467)
T 1ax4_A 75 SRNYYDL----KDKAKELFNYD--Y----I--IPAHQGRGAENILFPVLLKYKQ-KEG---KAKNPVFIS-NFHFDTTAA 137 (467)
T ss_dssp CHHHHHH----HHHHHHHHCCC--E----E--EEESSHHHHHHHHHHHHHHHHH-HTT---CCSSCEEEE-SSCCHHHHH
T ss_pred CccHHHH----HHHHHHHcCCC--c----E--EEcCCcHHHHHHHHHHHHHhhc-cCC---CccceEEEe-ccccchhhH
Confidence 4554444 55788888763 2 4 8999999999999999875321 245 77 8888 555 55677
Q ss_pred HHhhcCCeEEEeeCCC----------CCccCHHHHHHhhcc----CceEEEeecCCCCC-cccc---CHHHHHHHHHHcC
Q 009181 242 AAQYFNIKLWRVPVDK----------EFRADVKAIKKYINR----NTVLIVGSAPGFPH-GIID---PIQELGELALSHG 303 (541)
Q Consensus 242 a~~~~G~~v~~v~~~~----------~~~~d~~~Le~~i~~----~t~~vv~~~~~~~~-G~id---~i~~I~~la~~~~ 303 (541)
++...|.+++.++.+. ++.+|+++|+++|++ +|++|++++++||+ |.+. ++++|+++|++||
T Consensus 138 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~g 217 (467)
T 1ax4_A 138 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217 (467)
T ss_dssp HHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred HHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcC
Confidence 8888899988776421 467999999999984 68999999999999 7764 4789999999999
Q ss_pred CEEEEeCCccc-chh-hhh---hhcCCCCCCCC-cCCCCceEEEeCCCCCCCCCCCceEEEEecc-cccccccccccccC
Q 009181 304 TCLHVDLCLGG-FVL-PFA---KKLGYPIPPFD-FSVQGVTSISVDVHKYGLAPKGTSVVLYRNR-EIRKHQFVAVTEWS 376 (541)
Q Consensus 304 i~lhvD~a~gg-~~~-~f~---~~~g~~~p~~~-~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~-~~~~~~~~~~~~~~ 376 (541)
++||+|++++. ... .+- ...+.+++.+. -....+|++++++||++..|.| |+++.+++ ++..........|
T Consensus 218 i~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~- 295 (467)
T 1ax4_A 218 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM- 295 (467)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH-
T ss_pred CEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc-
Confidence 99999998653 111 000 01111000000 0002367889999999644434 55444535 5543221111112
Q ss_pred CCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEe-------cC
Q 009181 377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFG-------SD 449 (541)
Q Consensus 377 ~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~-------~~ 449 (541)
++. ...+..+...++++..++..... .+..++..++++++.+.|++ +++++..+.....+++. ..
T Consensus 296 ~~~----~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T 1ax4_A 296 EGF----VTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQIP 367 (467)
T ss_dssp TCS----TTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTSC
T ss_pred ccc----cccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccccc
Confidence 110 11122222222222223432211 12444455778889999987 58877766666677777 32
Q ss_pred C--CCHHHHHHHH-HhCCceeccC-----------C-----CCCeEEEEecCC--CHHHHHHHHHHHHHHHHHHHc
Q 009181 450 V--VDIFEVNDIM-SSKGWHLNPL-----------Q-----RPNSIHICVTLQ--HVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 450 ~--~~~~~l~~~l-~~~G~~~~~~-----------~-----~~~~iRi~~~~~--~~e~id~~i~~L~~~~~~l~~ 504 (541)
. .+..++.+.| .++|+.+... + ..+.+|++++.. +.++++++++.|++++++++.
T Consensus 368 ~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~~ 443 (467)
T 1ax4_A 368 GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFAT 443 (467)
T ss_dssp GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 1 2467888888 8889765431 1 126899999843 449999999999999988654
No 180
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.88 E-value=1.6e-22 Score=211.15 Aligned_cols=321 Identities=11% Similarity=0.074 Sum_probs=209.3
Q ss_pred HHHHHHHHh-hccc-CCCCcccchHHHHHHHHHHHHHHHHhCC--CCCCCCCccceEE--cCcHHHHHHHHHHHHHHHHH
Q 009181 146 SLINEACSM-FAHT-NPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNM--TSGGTESILLAVKSSRDYMR 219 (541)
Q Consensus 146 ~~~~~~~~~-~~~~-n~~~~~~~~~~~~~e~ev~~~la~l~g~--~~~~~~~~v~G~~--t~Ggt~a~~~al~a~r~~~~ 219 (541)
..+.+++.. .+.. ...+|...++..++++.+.+++....|. ++++ + ++ |+||++|+.++++.++..
T Consensus 50 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~----i--~~~~t~g~~~a~~~~~~~~~~~-- 121 (412)
T 1yaa_A 50 PSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDR----V--ISVQSLSGTGALHISAKFFSKF-- 121 (412)
T ss_dssp HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----E--EEEEEEHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcce----E--EEEeccchHhHHHHHHHHHHHh--
Confidence 445555555 4432 2233434455666666666666444442 3444 6 78 999999999986554421
Q ss_pred hhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeC-CC-CCccCHHHHHHhhccC---ceEEEeecCCCCCccccC---
Q 009181 220 NKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DK-EFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDP--- 291 (541)
Q Consensus 220 ~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~-~~-~~~~d~~~Le~~i~~~---t~~vv~~~~~~~~G~id~--- 291 (541)
.+| ++|+++.++|+++...++..|++++.+|. ++ ++.+|+++|+++++++ ++++++++|+||||.+.+
T Consensus 122 -~~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~ 197 (412)
T 1yaa_A 122 -FPD---KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQ 197 (412)
T ss_dssp -CTT---CCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHH
T ss_pred -CCC---CEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHH
Confidence 255 89999999999999999999999999998 53 7889999999999764 566666999999999966
Q ss_pred HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC--ceEEEeCCCCCCCCCCC--ceEEE--E----ec
Q 009181 292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKG--TSVVL--Y----RN 361 (541)
Q Consensus 292 i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g--vdsis~~~hK~~~~p~g--~g~ll--~----~~ 361 (541)
+++|+++|++||+++++|++|+++...-......++..+.-.... .+++..+++|. ++|.| +|+++ . ++
T Consensus 198 l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~GlriG~~~~~~~~~~~~ 276 (412)
T 1yaa_A 198 WVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKN-AGMYGERVGCFHLALTKQAQN 276 (412)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTT-SCCGGGCEEEEEEECCSCTTH
T ss_pred HHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCC-CCCcCCcceEEEEEecCCCCC
Confidence 668999999999999999999765431000000000001000111 35778889998 67766 68876 3 14
Q ss_pred cc----ccccccc-cccccCCCccCCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhh
Q 009181 362 RE----IRKHQFV-AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIK 428 (541)
Q Consensus 362 ~~----~~~~~~~-~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~ 428 (541)
++ +...... ....|. .....++.++...+. .+++++..++..++++++.+.|+
T Consensus 277 ~~~~~~l~~~l~~~~~~~~~--------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 342 (412)
T 1yaa_A 277 KTIKPAVTSQLAKIIRSEVS--------------NPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLV 342 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTTS--------------SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccC--------------CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3222111 000110 001223444433332 24678888899999999999998
Q ss_pred cCC---CeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 429 EIP---ELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 429 ~~~---~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
+++ ++++..+ ..+++.|. +.+...+...+.++|+.+.. ++|++++..+.++++++++.|+++++.
T Consensus 343 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~~gi~v~~-----~~Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 343 KLGTPGNWDHIVN-QCGMFSFT--GLTPQMVKRLEETHAVYLVA-----SGRASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp HHTCSSCCTHHHH-CCSSEEEC--CCCHHHHHHHHHHHCEECCT-----TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred hhCCCCCeeeecc-CceEEEee--CCCHHHHHHHHHhCCEEecc-----CcEEEEccCCHhHHHHHHHHHHHHHHh
Confidence 864 3665543 44444442 23456676666678987764 589999865559999999999998864
No 181
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.88 E-value=7.6e-22 Score=205.97 Aligned_cols=324 Identities=12% Similarity=0.097 Sum_probs=207.7
Q ss_pred HHHHHHHHhhc--ccCCCCcccchHHHHHHHHHHHHHHHHhCC--CCCCCCCccceEE--cCcHHHHHHHHHHHHHHHHH
Q 009181 146 SLINEACSMFA--HTNPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNM--TSGGTESILLAVKSSRDYMR 219 (541)
Q Consensus 146 ~~~~~~~~~~~--~~n~~~~~~~~~~~~~e~ev~~~la~l~g~--~~~~~~~~v~G~~--t~Ggt~a~~~al~a~r~~~~ 219 (541)
..+.+++.... .....+|...++..++++.+.+++....|. ++++ + ++ |+||++|+.++++.++..
T Consensus 51 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~----v--~~~~t~gg~~a~~~~~~~~~~~-- 122 (412)
T 1ajs_A 51 PVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKR----V--GGVQSLGGTGALRIGAEFLARW-- 122 (412)
T ss_dssp HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----E--EEEEEEHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCc----E--EEEECCCcHHHHHHHHHHHHHh--
Confidence 34555555444 112233433455555565444444332222 3443 6 88 999999999998755421
Q ss_pred hhcC--CCCCeEEecCCccchHHHHHhhcCCe-EEEeeCC--CCCccCHHHHHHhhcc---CceEEEeecCCCCCccccC
Q 009181 220 NKRG--ITRPEMIIPVSAHSAYDKAAQYFNIK-LWRVPVD--KEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP 291 (541)
Q Consensus 220 ~~~G--i~~~~vi~~~~~h~s~~ka~~~~G~~-v~~v~~~--~~~~~d~~~Le~~i~~---~t~~vv~~~~~~~~G~id~ 291 (541)
.+| ...++|+++.++|+++...++..|++ ++.+|.+ +++.+|+++|++++++ +++++++++|+||||.+.+
T Consensus 123 -~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~ 201 (412)
T 1ajs_A 123 -YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPT 201 (412)
T ss_dssp -SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCC
T ss_pred -CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCC
Confidence 122 11268999999999999999999999 9999984 5788999999999975 6788889999999999965
Q ss_pred ---HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEe--cccc
Q 009181 292 ---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYR--NREI 364 (541)
Q Consensus 292 ---i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~--~~~~ 364 (541)
+++|+++|++||+++++|++|+++...-.......+..++ ....-+++..+++|. +++.| +|+++.. +++.
T Consensus 202 ~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~ 279 (412)
T 1ajs_A 202 PEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFV-SEGFELFCAQSFSKN-FGLYNERVGNLTVVAKEPDS 279 (412)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH-HTTCCEEEEEECTTT-SCCGGGCEEEEEEECSSHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHh-ccCCcEEEEEecccc-cCCCCcceEEEEEecCCHHH
Confidence 6689999999999999999998764310000000000011 011224778899998 67666 7987772 4442
Q ss_pred ----cccccc-cccccCCCccCCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009181 365 ----RKHQFV-AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIKEIP 431 (541)
Q Consensus 365 ----~~~~~~-~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (541)
...... ....|.+ .+ ..+++++...+. .+.+++..++..++++++.+.|++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~---------~~-----~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1ajs_A 280 ILRVLSQMQKIVRVTWSN---------PP-----AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK 345 (412)
T ss_dssp HHHHHHHHHHHHHTTTSS---------CC-----SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCC---------CC-----hHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 111100 0011110 01 113333333332 24678888999999999999999874
Q ss_pred ---CeEEecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 432 ---ELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 432 ---~~~v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
++++..+ ..+++.|. +.+...+...+.++|+.+.. .+|++++..+.+++++++++|+++++++
T Consensus 346 ~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~~gv~v~~-----~~Ris~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 346 TPGTWNHITD-QIGMFSFT--GLNPKQVEYLINQKHIYLLP-----SGRINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CSSCCHHHHH-CCSSEEEC--CCCHHHHHHHHHTTCEECCT-----TSEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred CCCCeeEEcC-CCceEEEe--CCCHHHHHHHHHhCCEEecC-----CcEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 3665533 33333332 22344555667788987763 3699998545699999999999998753
No 182
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.88 E-value=5.8e-21 Score=198.71 Aligned_cols=295 Identities=14% Similarity=0.055 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhc-C---
Q 009181 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-N--- 247 (541)
Q Consensus 172 ~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~-G--- 247 (541)
...++++++++++|.+ + + ++|+|||+|+..++++++.+.....+-.+++|++.++.|+.+...+... +
T Consensus 82 ~~~~l~~~la~~~~~~--~----v--~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~ 153 (406)
T 4adb_A 82 PVLRLAKKLIDATFAD--R----V--FFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPA 153 (406)
T ss_dssp HHHHHHHHHHHHSSCS--E----E--EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGG
T ss_pred HHHHHHHHHHhhCCCC--e----E--EEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcc
Confidence 3456777999999765 3 5 8999999999999999875432211111378888888776654333333 2
Q ss_pred ---------CeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccc-----cCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 248 ---------IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-----DPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 248 ---------~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~i-----d~i~~I~~la~~~~i~lhvD~a~g 313 (541)
.++..+|.+ |+++|++++++++++|+++ |+||+|.+ +++++|.++|++||+++|+|++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~ 227 (406)
T 4adb_A 154 YSQDFAPLPADIRHAAYN-----DINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT 227 (406)
T ss_dssp GTGGGCSCCSSEEEECTT-----CHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccccCCCCCCCceEeCCC-----cHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 245555543 8999999999999999999 89999965 469999999999999999999998
Q ss_pred cchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch
Q 009181 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (541)
Q Consensus 314 g~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~ 393 (541)
++... |... .++......|++++ +|.+.++.++|+++.+ +++........ .+......
T Consensus 228 ~~~~~-----g~~~-~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~-~~~~~~~~~~~-------------~~~~~~~~ 285 (406)
T 4adb_A 228 GVGRT-----GELY-AYMHYGVTPDLLTT--AKALGGGFPVGALLAT-EECARVMTVGT-------------HGTTYGGN 285 (406)
T ss_dssp TTTTT-----SSSS-HHHHHTCCCSEEEE--CGGGGTTSCCEEEEEC-HHHHHTCCTTS-------------SCCSSTTC
T ss_pred CCCcc-----chhH-HHHhcCCCCCEEEe--chhhcCCCCeEEEEEc-HHHHhhhccCC-------------cCCCCCCC
Confidence 65321 1100 01111123467765 8986555568986654 43332211000 00011111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----CCeEEecCCCeeEEEEecCCC---CHHHHHHHHHhCCce
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI----PELFIIGRPDMTIVAFGSDVV---DIFEVNDIMSSKGWH 466 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~f~~~~~---~~~~l~~~l~~~G~~ 466 (541)
..++.++...+.....++..++..++++++.+.|+++ +.+.-. +....++++...+. +..++.+.|.++|+.
T Consensus 286 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 364 (406)
T 4adb_A 286 PLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEV-RGLGLLIGCVLNADYAGQAKQISQEAAKAGVM 364 (406)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECTTTTTCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEE-EEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcE
Confidence 2234444333322112577778888888888888764 222111 12345667776542 578999999999987
Q ss_pred eccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 467 LNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 467 ~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
+...+ ++++|++++..++ +++++++++|+++++++.+
T Consensus 365 v~~~~-~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 365 VLIAG-GNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp CEESS-TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EeecC-CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 76543 5799998776655 9999999999999988764
No 183
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.87 E-value=4.9e-21 Score=198.89 Aligned_cols=289 Identities=14% Similarity=0.094 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHh-hcCCCCCeEEecCCc-cchHHHHHhhcCC
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSA-HSAYDKAAQYFNI 248 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~-~~Gi~~~~vi~~~~~-h~s~~ka~~~~G~ 248 (541)
....++++.+++++|. ++ + ++|+||++|+..++++++.+... .+| +++|+++++. |.++..+++..|.
T Consensus 82 ~~~~~l~~~la~~~g~--~~----v--~~~~gg~~a~~~al~~~~~~~~~~~~~--~~~vi~~~~~yh~~~~~~~~~~g~ 151 (397)
T 2ord_A 82 RPQMELAELLSKNTFG--GK----V--FFANTGTEANEAAIKIARKYGKKKSEK--KYRILSAHNSFHGRTLGSLTATGQ 151 (397)
T ss_dssp HHHHHHHHHHHHTTTS--CE----E--EEESSHHHHHHHHHHHHHHHHHHHCTT--CCEEEEEBTCCCCSSHHHHHHSBC
T ss_pred HHHHHHHHHHHHhcCC--Ce----E--EEeCCHHHHHHHHHHHHHHHhhcCCCC--CceEEEEcCCcCCCchhhhhccCC
Confidence 3445677788888873 22 5 89999999999999988643211 011 2567776655 5666667788887
Q ss_pred e------------EEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCcc----ccCHHHHHHHHHHcCCEEEEeCCc
Q 009181 249 K------------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGI----IDPIQELGELALSHGTCLHVDLCL 312 (541)
Q Consensus 249 ~------------v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~----id~i~~I~~la~~~~i~lhvD~a~ 312 (541)
+ ++.+|.+ |+++|++++++++++|++++|+||+|. .+++++|.++|++||+++++|++|
T Consensus 152 ~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~ 226 (397)
T 2ord_A 152 PKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQ 226 (397)
T ss_dssp HHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred hhhccccCCCCCCeeEecCC-----CHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 6 7777764 899999999999999999999999999 367999999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCCCcCC--CCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCC
Q 009181 313 GGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP 390 (541)
Q Consensus 313 gg~~~~f~~~~g~~~p~~~~~~--~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~ 390 (541)
+++... |. .+.+.. ...|++++ +|++.++.++|+++.+++ +. . +. ....+. +..+ +
T Consensus 227 ~~~~~~-----g~---~~~~~~~~~~~d~~s~--sK~~~~G~r~G~~~~~~~-~~-~-l~--~~~~~~-----~~~~--~ 284 (397)
T 2ord_A 227 CGMGRT-----GK---LFAYQKYGVVPDVLTT--AKGLGGGVPIGAVIVNER-AN-V-LE--PGDHGT-----TFGG--N 284 (397)
T ss_dssp TTTTTT-----SS---SSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECST-TC-C-CC--TTSSCC-----SSTT--C
T ss_pred cCCccC-----cc---chhhhhhCCCCCeeee--ccccCCCcCeEEEEEchH-hc-c-cC--CCCcCC-----CCCC--C
Confidence 865321 10 111111 12466655 698666667998777654 32 1 11 000000 1111 1
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----CCeEEecCCCeeEEEEecCC-CCHHHHHHHHHhCCc
Q 009181 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI----PELFIIGRPDMTIVAFGSDV-VDIFEVNDIMSSKGW 465 (541)
Q Consensus 391 ~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~l~~~G~ 465 (541)
....+++.++++.+.. ++..++..++++++.+.|+++ +.+... ++..+++++.+.+ .+..++.+.|.++|+
T Consensus 285 ~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~l~~~l~~~gi 360 (397)
T 2ord_A 285 PLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV-RGMGLMIGIQFREEVSNREVATKCFENKL 360 (397)
T ss_dssp HHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTSCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE-EEEeEEEEEEECChHHHHHHHHHHHHCCC
Confidence 1112334444444332 456778888888888888764 333222 2345677777654 367889999999998
Q ss_pred eeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 466 HLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 466 ~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
.+...+ ++.+|++++..++ +++++++++|++++++
T Consensus 361 ~v~~~~-~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 361 LVVPAG-NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp ECEEET-TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEccCC-CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 766543 5789999875444 9999999999998754
No 184
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.87 E-value=2e-20 Score=194.12 Aligned_cols=294 Identities=15% Similarity=0.070 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHh-h----
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ-Y---- 245 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~-~---- 245 (541)
....++.+++++++|. +. + ++|+||++|+..|+++++..... +|..+++|++.++.|+.....+. .
T Consensus 78 ~~~~~l~~~la~~~~~--~~----v--~~~~gg~ea~~~al~~~~~~~~~-~g~~~~~vi~~~~~yhg~~~~~~~~~~~~ 148 (395)
T 3nx3_A 78 ENIAAAAKNLAKASAL--ER----V--FFTNSGTESIEGAMKTARKYAFN-KGVKGGQFIAFKHSFHGRTLGALSLTANE 148 (395)
T ss_dssp HHHHHHHHHHHHHHTC--SE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred HHHHHHHHHHHHhcCC--Ce----E--EEeCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEcCCcCCCCHHHHhhcCCc
Confidence 4455677799999873 32 5 89999999999999998764332 23234788888877655332222 2
Q ss_pred --------cCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccC----HHHHHHHHHHcCCEEEEeCCcc
Q 009181 246 --------FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 246 --------~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i~lhvD~a~g 313 (541)
.+.++..+|.+ |+++|++++++++++|++..+++++|.+.+ +++|.++|++||++||+|++|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~ 223 (395)
T 3nx3_A 149 KYQKPFKPLISGVKFAKYN-----DISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC 223 (395)
T ss_dssp HHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred ccccccCCCCCCcEEeCCC-----CHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 23466666654 899999999999999999999999999877 9999999999999999999998
Q ss_pred cchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch
Q 009181 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (541)
Q Consensus 314 g~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~ 393 (541)
++... |... ..+.....+|.++++ |.+.++.++|+++.+++.+....... ..+......
T Consensus 224 ~~g~~-----g~~~-~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 282 (395)
T 3nx3_A 224 GMGRS-----GKFF-AYEHAQILPDIMTSA--KALGCGLSVGAFVINQKVASNSLEAG-------------DHGSTYGGN 282 (395)
T ss_dssp TTTTT-----SSSS-GGGGGTCCCSEEEEC--GGGTTTSCCEEEEECHHHHHHHSCTT-------------CCSSCBSCC
T ss_pred CCCcC-----Ccch-hHHhcCCCCCEEEec--ccccCCCceEEEEEchhhhhhhcCCc-------------ccCCCCCCC
Confidence 76321 1100 011111224677665 77555677898776544212221100 001111111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEecCCC-CHHHHHHHHHhCCceec
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGSDVV-DIFEVNDIMSSKGWHLN 468 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~~~~-~~~~l~~~l~~~G~~~~ 468 (541)
..++.+++..+....-++..++..++.+++++.|++ .|.+..+ ++...++++.+.+. +..++.+.|.++|+.+.
T Consensus 283 ~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 361 (395)
T 3nx3_A 283 PLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKSVKVAKVIQKCQENALLLI 361 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTSCHHHHHHHHHHTTEECE
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCcchHHHHHHHHHHCCCEEe
Confidence 224444443332111134455555555565555543 4555443 23456777776553 67889999999998776
Q ss_pred cCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 469 PLQRPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 469 ~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
..+ ++++|++++..++ +++++++++|++++++
T Consensus 362 ~~~-~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 362 SCG-ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp EET-TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 543 5799999877655 9999999999998763
No 185
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.87 E-value=7.5e-21 Score=201.02 Aligned_cols=300 Identities=15% Similarity=0.129 Sum_probs=206.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHH--H
Q 009181 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKA--A 243 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka--~ 243 (541)
+....+|+..++++++++|.+... +++++|++|+..+++++++ +| ++|+++.+.|.+ +... .
T Consensus 87 ~~~~~~e~~a~~~la~~~g~~~~~-------v~~~sGs~a~~~a~~~~~~-----~G---d~Vl~~~~~~~~~~~~~~~~ 151 (447)
T 3h7f_A 87 EHVDVVENLARDRAKALFGAEFAN-------VQPHSGAQANAAVLHALMS-----PG---ERLLGLDLANGGHLTHGMRL 151 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEE-------CCCSSHHHHHHHHHHHHCC-----TT---CEEEEECGGGTCCGGGTCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceE-------EEeCCHHHHHHHHHHHhcC-----CC---CEEEecCcccccccchhhhh
Confidence 344455654558999999998643 4477889999999988753 67 899999999876 2211 1
Q ss_pred hhc--CCeEEEeeCC-CCCccCHHHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhh
Q 009181 244 QYF--NIKLWRVPVD-KEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (541)
Q Consensus 244 ~~~--G~~v~~v~~~-~~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f 319 (541)
... +..+..++++ +++.+|+++|++++. .++++|+++.++||++. ++++|.++|++||+++|+|++|+.....
T Consensus 152 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~- 228 (447)
T 3h7f_A 152 NFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVA- 228 (447)
T ss_dssp SHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHH-
T ss_pred hhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhc-
Confidence 222 3466667776 478899999999996 47889898899988876 9999999999999999999997543321
Q ss_pred hhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHH
Q 009181 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (541)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~ 399 (541)
.|. . .. ...++|+++.++||++.||.| |+++.+ +++......... +...|+.....++++.+
T Consensus 229 ---~g~-~--~~-~~~~~di~~~s~sK~l~G~~g-G~i~~~-~~~~~~l~~~~~---------~~~~~~~~~~~~~a~~~ 290 (447)
T 3h7f_A 229 ---AGL-H--PS-PVPHADVVSTTVHKTLGGGRS-GLIVGK-QQYAKAINSAVF---------PGQQGGPLMHVIAGKAV 290 (447)
T ss_dssp ---TTS-S--CC-STTTCSEEEEESSGGGCCCSC-EEEEEC-GGGHHHHHHHHT---------TTTCSSCCHHHHHHHHH
T ss_pred ---CCC-C--CC-CCCCCcEEEecCCcCCCCCCe-EEEEEC-HHHHHHHhhhcC---------CcccCCccHHHHHHHHH
Confidence 121 1 11 124679999999999666665 765554 443322111101 11112222223556666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----CCeEEecC-CCeeEEEEecCC--CCHHHHHHHHHhCCceec----
Q 009181 400 ALMSLGQEGYLENTKAIMEVSESIQKGIKEI----PELFIIGR-PDMTIVAFGSDV--VDIFEVNDIMSSKGWHLN---- 468 (541)
Q Consensus 400 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~-~~~~~v~f~~~~--~~~~~l~~~l~~~G~~~~---- 468 (541)
++.....+++++..++..++++++.+.|++. ++++++.. ....++++...+ .+...+.+.|.++|+.+.
T Consensus 291 a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i 370 (447)
T 3h7f_A 291 ALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAV 370 (447)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC---
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccC
Confidence 6665555678899999999999999999876 58888753 345566666543 366777888888897765
Q ss_pred cC-----CCCCeEEEEecCC-----CHHHHHHHHHHHHHHHHHH
Q 009181 469 PL-----QRPNSIHICVTLQ-----HVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 469 ~~-----~~~~~iRi~~~~~-----~~e~id~~i~~L~~~~~~l 502 (541)
.. ..++++|+++... +.++++++++.|++++++.
T Consensus 371 ~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 371 PNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp ----------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred CCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 22 1246799987643 3489999999999988654
No 186
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.87 E-value=1.2e-21 Score=203.16 Aligned_cols=300 Identities=12% Similarity=0.073 Sum_probs=199.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHhC--CCCCCCCCccceEE--cCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccc
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNM--TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g--~~~~~~~~~v~G~~--t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~ 237 (541)
+|...++..++++.+.+++....+ +++++ + ++ |+||++|+.+++++++.. .+| ++|+++.++|+
T Consensus 64 ~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~----v--~~~~~~g~~~a~~~~~~~~~~~---~~g---d~Vl~~~p~y~ 131 (396)
T 2q7w_A 64 NYLGIDGIPEFGRCTQELLFGKGSALINDKR----A--RTAQTPGGTGALRVAADFLAKN---TSV---KRVWVSNPSWP 131 (396)
T ss_dssp CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC----E--EEEEESHHHHHHHHHHHHHHHH---SCC---CEEEEEESCCT
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCcccccc----E--EEEecccchhhHHHHHHHHHHh---CCC---CEEEEcCCCch
Confidence 343345555666655555432211 12443 5 66 999999999999887531 255 89999999999
Q ss_pred hHHHHHhhcCCeEEEeeCC--CCCccCHHHHHHhhcc---CceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEe
Q 009181 238 AYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD 309 (541)
Q Consensus 238 s~~ka~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~~---~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD 309 (541)
++...++..|++++.+|.+ +++.+|+++|++++++ +++++++++|+||||.+.+ +++|+++|++||+++++|
T Consensus 132 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 211 (396)
T 2q7w_A 132 NHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFD 211 (396)
T ss_dssp HHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 9999999999999999985 5788999999999975 4788999999999999876 568999999999999999
Q ss_pred CCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEE--eccc----ccccccc-cccccCCCcc
Q 009181 310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLY--RNRE----IRKHQFV-AVTEWSGGLY 380 (541)
Q Consensus 310 ~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~--~~~~----~~~~~~~-~~~~~~~~~~ 380 (541)
++|+++...- .....++..++. ....+++..+++|. +++.| +|+++. ++++ +...... ....|.
T Consensus 212 e~~~~~~~~~-~~~~~~~~~~~~-~~~~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 284 (396)
T 2q7w_A 212 FAYQGFARGL-EEDAEGLRAFAA-MHKELIVASSYSXN-FGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYS---- 284 (396)
T ss_dssp ESCTTSSSCH-HHHTHHHHHHHH-HCSCEEEEEECTTT-TTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTS----
T ss_pred cccccccCCc-cchhHHHHHHHh-cCCcEEEEEecccc-ccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccC----
Confidence 9998764310 000000000110 11235778899998 56566 798776 2442 2211100 000110
Q ss_pred CCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEecCCCeeEEEEecC
Q 009181 381 VSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIKEIP---ELFIIGRPDMTIVAFGSD 449 (541)
Q Consensus 381 ~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~f~~~ 449 (541)
+....++.++...+. .+.+++..++..++++++.+.|+++. ++++..+....++++..
T Consensus 285 ----------~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~- 353 (396)
T 2q7w_A 285 ----------NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL- 353 (396)
T ss_dssp ----------SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC-
T ss_pred ----------CCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC-
Confidence 001334555544443 24677788888999999999999873 36655333333333332
Q ss_pred CCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHH
Q 009181 450 VVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRES 498 (541)
Q Consensus 450 ~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~ 498 (541)
+...+...+.++|+.+.. .+|++++..+.+++++++++|+++
T Consensus 354 --~~~~~~~~l~~~gv~v~~-----~~Ris~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 354 --TKEQVLRLREEFGVYAVA-----SGRVNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp --CHHHHHHHHHHHCEECCT-----TCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHhcCeeecC-----CceEEEeecCHHHHHHHHHHHHhc
Confidence 345667777788987763 379999865569999999999875
No 187
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.87 E-value=1.7e-20 Score=197.01 Aligned_cols=303 Identities=13% Similarity=0.122 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHHhhcC----
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYFN---- 247 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~~~~G---- 247 (541)
..++.+.++++++.+.++ + ++|+||++|+..++++++.+... +|-.+++|+++++.|+. ...++...|
T Consensus 88 ~~~l~~~la~~~~~~~~~----v--~~~~ggtea~~~ai~~~~~~~~~-~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~ 160 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLEC----V--FLADSGSVAVEVAMKMALQYWQA-KGEARQRFLTFRNGYHGDTFGAMSVCDPDNS 160 (429)
T ss_dssp HHHHHHHHHHHSCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHH-HTCCCCEEEEETTCCCCSSHHHHTTSCTTTT
T ss_pred HHHHHHHHHHhCCCCCCE----E--EEeCCHHHHHHHHHHHHHHHhcc-cCCCCCeEEEECCCCCCCchhhhhhcCCchh
Confidence 345667889999876654 6 99999999999999987643321 11112789998876544 333433322
Q ss_pred ---------CeEEEeeCCC-----C-CccCHHHHHHhhc---cCceEEEeecC-CCCCccccC----HHHHHHHHHHcCC
Q 009181 248 ---------IKLWRVPVDK-----E-FRADVKAIKKYIN---RNTVLIVGSAP-GFPHGIIDP----IQELGELALSHGT 304 (541)
Q Consensus 248 ---------~~v~~v~~~~-----~-~~~d~~~Le~~i~---~~t~~vv~~~~-~~~~G~id~----i~~I~~la~~~~i 304 (541)
..+..++++. . +.+|+++|+++++ +++++|+++.. +||+|.+.+ +++|.++|++||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~ 240 (429)
T 1s0a_A 161 MHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240 (429)
T ss_dssp TGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC
T ss_pred hcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 1355666542 2 3589999999997 46677776666 789998766 9999999999999
Q ss_pred EEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCC-CCceEEEEecccccccccccccccCCCccCCC
Q 009181 305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP 383 (541)
Q Consensus 305 ~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (541)
++|+|++|+++... |... .++......|+++++ |.+.++ .++|+++.++ ++......... .......
T Consensus 241 ~li~De~~~~~g~~-----g~~~-~~~~~~~~~d~~t~s--K~l~~G~~~iG~~~~~~-~~~~~l~~~~~---~~~~~~~ 308 (429)
T 1s0a_A 241 LLIADEIATGFGRT-----GKLF-ACEHAEIAPDILCLG--KALTGGTMTLSATLTTR-EVAETISNGEA---GCFMHGP 308 (429)
T ss_dssp EEEEECTTTTTTTT-----SSSS-GGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECH-HHHHHHHTSTT---SSCSCCC
T ss_pred EEEEeehhhCCccc-----chHH-HhhhcCCCCCEEEec--ccccCCCccceEEEeCH-HHHHHhhcCCC---cccccCC
Confidence 99999999765321 1000 011112235777665 875566 7899877654 44322111000 0000000
Q ss_pred cccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEecCCCeeEEEEecCC-CCHHHHHHH
Q 009181 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI---PELFIIGRPDMTIVAFGSDV-VDIFEVNDI 459 (541)
Q Consensus 384 ~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~ 459 (541)
+..++ ....+++.++++.+.. .+..++..++++++.+.|+++ |++..+ ++...++++.+.+ .+..++.+.
T Consensus 309 t~~~n--~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~l~~~ 382 (429)
T 1s0a_A 309 TFMGN--PLACAAANASLAILES---GDWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTHPVNMAALQKF 382 (429)
T ss_dssp TTTTC--HHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESSCBCHHHHHHH
T ss_pred CCCCC--HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEEEECCcccHHHHHHH
Confidence 11111 1112344445544332 245677777888999988875 566533 2334567777654 367889999
Q ss_pred HHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 460 MSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 460 l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
|.++|+.+... .+++|++++..++ +++++++++|+++++++
T Consensus 383 l~~~Gi~v~~~--~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 383 FVEQGVWIRPF--GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HHHTTEECCCB--TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred HHHCCCEEecc--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999887654 3689999886655 99999999999987544
No 188
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.87 E-value=7e-21 Score=198.07 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=190.9
Q ss_pred hHHHHHHHHHHHHHHHH--hC-CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH
Q 009181 167 QSVARFEAEVIAMTAAL--LG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l--~g-~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~ 243 (541)
++..++++ .++++ .| .++++ + ++|+|+++++..++..+ .+| ++|+++.++|+++..++
T Consensus 75 ~g~~~lr~----~la~~l~~g~~~~~~----v--~~~~G~~~al~~~~~~~------~~g---d~Vl~~~p~y~~~~~~~ 135 (400)
T 3asa_A 75 FGLPALRQ----KLSEDFYRGFVDAKE----I--FISDGAKVDLFRLLSFF------GPN---QTVAIQDPSYPAYLDIA 135 (400)
T ss_dssp TCCHHHHH----HHHHTTSTTSSCGGG----E--EEESCHHHHHHHHHHHH------CSS---CEEEEEESCCHHHHHHH
T ss_pred CCCHHHHH----HHHHHHHcCCCCHHH----E--EEccChHHHHHHHHHHc------CCC---CEEEECCCCcHHHHHHH
Confidence 34444444 56665 56 55554 6 89999999999865432 256 89999999999999999
Q ss_pred hhcCCe-EEEeeCCCC--CccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCCcccchh
Q 009181 244 QYFNIK-LWRVPVDKE--FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVL 317 (541)
Q Consensus 244 ~~~G~~-v~~v~~~~~--~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a~gg~~~ 317 (541)
+..|++ ++.+|++++ +..|++ + + +++++|++++|+||||.+.| +++|+++|+++|+++++|++|+++..
T Consensus 136 ~~~g~~~~~~~~~~~~~~~~~~l~---~-~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 210 (400)
T 3asa_A 136 RLTGAKEIIALPCLQENAFFPEFP---E-D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFIS 210 (400)
T ss_dssp HHTTCSEEEEEECCGGGTTCCCCC---T-T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCC
T ss_pred HHcCCcceEecccchhcCcccChh---h-c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhc
Confidence 999998 999998753 333432 2 1 57889999999999999987 66789999999999999999986643
Q ss_pred hhhhhcCCCCCCCCcC-CCCceEEEeCCCCCCCCCC--CceEEEEecccc------cccccccccccCCCccCCCcccCC
Q 009181 318 PFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGLAPK--GTSVVLYRNREI------RKHQFVAVTEWSGGLYVSPTVAGS 388 (541)
Q Consensus 318 ~f~~~~g~~~p~~~~~-~~gvdsis~~~hK~~~~p~--g~g~ll~~~~~~------~~~~~~~~~~~~~~~~~~~~~~gs 388 (541)
. .... .+...+. ..+.+++..+++|+ +++. .+|+++.+++.. .......... ...++
T Consensus 211 ~---~~~~-~~~~~~~~~~~~~i~~~s~sK~-~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 276 (400)
T 3asa_A 211 D---PSLP-KSIFEIPDARFCAIEINSFSKP-LGFAGIRLGWTVIPQELTYADGHFVIQDWERFLS---------TTFNG 276 (400)
T ss_dssp C---TTSC-SSGGGSTTGGGTEEEEEECCGG-GTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHH---------HHCCC
T ss_pred C---CCCC-CchhhCCCCCCceEEEecchhh-cCCcchheeEEeeChhhccchhhhHHHHHHHHhc---------cCccC
Confidence 1 0000 0011111 12346788899999 4444 479876654331 1111000000 00000
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEe-cCC-CCHHHHHHHHHh-CCc
Q 009181 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFG-SDV-VDIFEVNDIMSS-KGW 465 (541)
Q Consensus 389 r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~-~~~-~~~~~l~~~l~~-~G~ 465 (541)
....++.++...+....+++..+++.++++++.+.|++. ++++..+....++++. .+. .+..++.+.|.+ +|+
T Consensus 277 ---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv 352 (400)
T 3asa_A 277 ---ASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHI 352 (400)
T ss_dssp ---CCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSE
T ss_pred ---CChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCE
Confidence 112244444444432256778888889999999999987 8888765556778887 653 355678887765 487
Q ss_pred eecc---CC--CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 466 HLNP---LQ--RPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 466 ~~~~---~~--~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
.+.. +. .++++|+++. .+.+++++++++|+++++....
T Consensus 353 ~v~~g~~f~~~~~~~iRis~~-~~~e~i~~~l~~l~~~~~~~~~ 395 (400)
T 3asa_A 353 AITPGIGFGRSGSGFVRFSSL-GKREDILAACERLQMAPALQSH 395 (400)
T ss_dssp ECEEGGGGCGGGTTCEEEECC-SCHHHHHHHHHHHHC-------
T ss_pred EEeChhHhCCCCCCEEEEEee-CCHHHHHHHHHHHHHHHHhhhh
Confidence 6543 11 2468999953 3459999999999999876553
No 189
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.87 E-value=2.6e-20 Score=195.22 Aligned_cols=295 Identities=16% Similarity=0.051 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC-CCeEEecCCcc-chHHHHHhhcCC
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT-RPEMIIPVSAH-SAYDKAAQYFNI 248 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~-~~~vi~~~~~h-~s~~ka~~~~G~ 248 (541)
+...++.+.+++++|. +. + ++|+||++|+..++++++.+...+ |.. +++|+++++.+ .....++...|.
T Consensus 99 ~~~~~l~~~la~~~g~--~~----v--~~~~ggteA~~~al~~~~~~~~~~-~~~g~~~vi~~~~~yh~~~~~~~~~~g~ 169 (420)
T 2pb2_A 99 EPALRLGRKLIDATFA--ER----V--LFMNSGTEANETAFKLARHYACVR-HSPFKTKIIAFHNAFHGRSLFTVSVGGQ 169 (420)
T ss_dssp HHHHHHHHHHHHHSSC--SE----E--EEESSHHHHHHHHHHHHHHHHHHH-TCTTCCEEEEETTCCCCSSHHHHHHSSC
T ss_pred HHHHHHHHHHHhhCCC--Ce----E--EEeCCHHHHHHHHHHHHHHHhhhc-cCCCCCEEEEEeCCcCCcCHHHHHhcCC
Confidence 4455677788888874 22 5 899999999999999988643221 111 24788887665 444555555554
Q ss_pred e------------EEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCcc----ccCHHHHHHHHHHcCCEEEEeCCc
Q 009181 249 K------------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGI----IDPIQELGELALSHGTCLHVDLCL 312 (541)
Q Consensus 249 ~------------v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~----id~i~~I~~la~~~~i~lhvD~a~ 312 (541)
+ +..+|.+ |+++|++++++++++|+++.++++.|. .+++++|.++|++||++|++|++|
T Consensus 170 ~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~ 244 (420)
T 2pb2_A 170 PKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ 244 (420)
T ss_dssp HHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccccccCCCCCCCeEEecCC-----CHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 3 5666653 899999999999999999999888786 356999999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCc
Q 009181 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (541)
Q Consensus 313 gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~ 392 (541)
.++.. .|... .++......|++++ +|++.++.++|+++.+++ +...... ...+. +..++ ..
T Consensus 245 ~g~~~-----~g~~~-~~~~~~~~~diit~--sK~l~~G~~iG~~~~~~~-l~~~l~~---~~~~~-----t~~~~--~~ 305 (420)
T 2pb2_A 245 CGMGR-----TGDLF-AYMHYGVTPDILTS--AKALGGGFPVSAMLTTQE-IASAFHV---GSHGS-----TYGGN--PL 305 (420)
T ss_dssp TTTTT-----TSSSS-HHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHH-HHTTCC-------CC-----EECCC--HH
T ss_pred cCccc-----CCcHH-HHHhcCCCCCeEEe--cccccCCCceEEEEEhHH-HHHhhcC---CCcCc-----ccCcC--HH
Confidence 76532 11100 00111123477754 698666667998887654 3322110 00000 11111 11
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----CCeEEecCCCeeEEEEecCCC---CHHHHHHHHHhCCc
Q 009181 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI----PELFIIGRPDMTIVAFGSDVV---DIFEVNDIMSSKGW 465 (541)
Q Consensus 393 ~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~f~~~~~---~~~~l~~~l~~~G~ 465 (541)
..++..++++.+.. ++..++..++++++.+.|+++ |.+..+ ++...++++.+.+. +..++.+.|.++|+
T Consensus 306 ~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi 381 (420)
T 2pb2_A 306 ACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKYKGRARDFLYAGAEAGV 381 (420)
T ss_dssp HHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGGTTCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCCchHHHHHHHHHHHHCCC
Confidence 12334444544433 456777888888888888764 444333 23456677766532 57889999999998
Q ss_pred eeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHH
Q 009181 466 HLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 466 ~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~ 503 (541)
.+...+ ++.+|++++...+ +++++++++|+++++++.
T Consensus 382 ~v~~~~-~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~~ 419 (420)
T 2pb2_A 382 MVLNAG-ADVMRFAPSLVVEEADIHEGMQRFAQAVGKVV 419 (420)
T ss_dssp ECEESS-TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 776543 6789999875544 999999999999987653
No 190
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.86 E-value=2.1e-20 Score=192.95 Aligned_cols=290 Identities=16% Similarity=0.175 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCc---cchHHHHHhhc
Q 009181 171 RFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA---HSAYDKAAQYF 246 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~-~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~---h~s~~ka~~~~ 246 (541)
.++.++.+.+++++|.++ ++ + ++|+|||+|+..+++++ +| ++|+++.+. |.++...++..
T Consensus 58 ~~~~~~~~~~a~~~g~~~~~~----~--~~~~ggt~a~~~~~~~~-------~g---d~Vl~~~~~y~~~~~~~~~~~~~ 121 (374)
T 2aeu_A 58 YFAEKVNEYGLKHLGGDENDK----C--VGFNRTSSAILATILAL-------KP---KKVIHYLPELPGHPSIERSCKIV 121 (374)
T ss_dssp HHHHHHHHHHHHHHTCCTTEE----E--EEESSHHHHHHHHHHHH-------CC---SEEEEECSSSSCCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCcce----E--EEEcChHHHHHHHHHhC-------CC---CEEEEecCCCCccHHHHHHHHHc
Confidence 456778888889999842 33 4 89999999999999876 45 899999995 44444478888
Q ss_pred CCeEEEeeCCCCCccCHHHHHHhhccCceE-EEeecCCCCCc-cccCHHHHHHHHHHcCCEEEEeCCcccchh-hhhhhc
Q 009181 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVL-IVGSAPGFPHG-IIDPIQELGELALSHGTCLHVDLCLGGFVL-PFAKKL 323 (541)
Q Consensus 247 G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~-vv~~~~~~~~G-~id~i~~I~~la~~~~i~lhvD~a~gg~~~-~f~~~~ 323 (541)
|++++.+ .|+++|+++ +++|++ |++++|+||+| ...++++|.++|++||+++|+|++|+.+.. +.
T Consensus 122 g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~---- 189 (374)
T 2aeu_A 122 NAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLF---- 189 (374)
T ss_dssp TCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT----
T ss_pred CcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCccccccccc----
Confidence 9999888 389999999 888999 99999999999 889999999999999999999999986642 10
Q ss_pred CCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHH
Q 009181 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS 403 (541)
Q Consensus 324 g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~ 403 (541)
. . . .....++|+++.++||++. +.++|+++.++ ++..........+ +. +-+....+++.+++..
T Consensus 190 ~--~-~-~~~~~~~di~~~S~sK~l~-g~~~G~~~~~~-~~~~~l~~~~~~~-~~---------~~~~~~~~a~~~al~~ 253 (374)
T 2aeu_A 190 N--Q-P-PALKLGADLVVTSTDKLME-GPRGGLLAGKK-ELVDKIYIEGTKF-GL---------EAQPPLLAGIYRALKN 253 (374)
T ss_dssp T--C-C-CHHHHTCSEEEEETTSSSS-SCSCEEEEEEH-HHHHHHHHHHHTT-TC---------BCCHHHHHHHHHHHHH
T ss_pred c--c-C-CccccCCcEEEecCccccc-CcceEEEEECH-HHHHHHHHhhccc-cC---------CCCHHHHHHHHHHHHH
Confidence 0 0 0 0111356899999999954 45889866654 4433211111111 10 0011122334444444
Q ss_pred HhHHHHHHHHHHHHHH----HHHHHHHhhcC---CCeEEecCCCeeEEEEe-cCCC-C---HHHHHH-HHHhCCceeccC
Q 009181 404 LGQEGYLENTKAIMEV----SESIQKGIKEI---PELFIIGRPDMTIVAFG-SDVV-D---IFEVND-IMSSKGWHLNPL 470 (541)
Q Consensus 404 lg~~g~~~~~~~~~~~----a~~l~~~L~~~---~~~~v~~~~~~~~v~f~-~~~~-~---~~~l~~-~l~~~G~~~~~~ 470 (541)
+..+.+++..++.... .+.+.+.|.++ +++.+..++...++.+. .... + ..++.. .+.++|+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g 333 (374)
T 2aeu_A 254 FNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITV 333 (374)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecC
Confidence 4333444444444444 46666666654 46666555555554443 2110 1 112543 445679776432
Q ss_pred -C---CCCeEEEEecCCCH--HHHHHHHHHHHHHHHHHHc
Q 009181 471 -Q---RPNSIHICVTLQHV--AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 471 -~---~~~~iRi~~~~~~~--e~id~~i~~L~~~~~~l~~ 504 (541)
. .++++|++++..+. .+++++++.|+++++++.+
T Consensus 334 ~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 334 AGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp SSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 23589999975333 3589999999999888753
No 191
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.86 E-value=4.7e-21 Score=198.69 Aligned_cols=299 Identities=12% Similarity=0.111 Sum_probs=197.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEE--cCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchH
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNM--TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~--t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~ 239 (541)
+|....+..++++.+.+++... +.++++ + ++ |+||++|+.+++++++.. .+| ++|+++.++|+++
T Consensus 64 ~y~~~~g~~~lr~~la~~~~~~-~~~~~~----v--~~~~~~g~~~a~~~~~~~~~~~---~~g---d~vl~~~p~~~~~ 130 (394)
T 2ay1_A 64 TYAGLSGEPEFQKAMGELILGD-GLKSET----T--ATLATVGGTGALRQALELARMA---NPD---LRVFVSDPTWPNH 130 (394)
T ss_dssp CCCCSSCCHHHHHHHHHHHHGG-GCCGGG----E--EEEEEEHHHHHHHHHHHHHHHH---CTT---CCEEEEESCCHHH
T ss_pred CCCCCCCcHHHHHHHHHHHhCC-CCCccc----E--EEEecCCchhHHHHHHHHHHhc---CCC---CEEEEcCCCChhH
Confidence 3433344555666555544211 224444 5 77 999999999999887642 145 8899999999999
Q ss_pred HHHHhhcCCeEEEeeCC--CCCccCHHHHHHhhccC---ceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCC
Q 009181 240 DKAAQYFNIKLWRVPVD--KEFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLC 311 (541)
Q Consensus 240 ~ka~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~~~---t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a 311 (541)
...++..|++++.+|.+ +++.+|+++++++++++ ++++++++|+||||.+.| +++|.++|++||+++++|++
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~ 210 (394)
T 2ay1_A 131 VSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLA 210 (394)
T ss_dssp HHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 99999999999999986 57889999999999753 678888999999999976 56889999999999999999
Q ss_pred cccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEE--ecccccccc---cc--cccccCCCccCC
Q 009181 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLY--RNREIRKHQ---FV--AVTEWSGGLYVS 382 (541)
Q Consensus 312 ~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~--~~~~~~~~~---~~--~~~~~~~~~~~~ 382 (541)
|+++...-... ..++..++.. ..-.++..+++|+ +++.| +|+++. ++++..... .. ....|.+
T Consensus 211 ~~~~~~~~~~~-~~~~~~~~~~-~~~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----- 282 (394)
T 2ay1_A 211 YQGFGDGLEED-AAGTRLIASR-IPEVLIAASCSKN-FGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSF----- 282 (394)
T ss_dssp CTTSSSCHHHH-HHHHHHHHHH-CSSEEEEEECTTT-TTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSS-----
T ss_pred ccccccCcccc-hHHHHHHhhc-CCCEEEEEeccCC-CcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCC-----
Confidence 98764310000 0000001100 1124567788998 55555 698776 344322110 00 0011110
Q ss_pred CcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEecCCCeeEEEEecCCC
Q 009181 383 PTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIKEIP---ELFIIGRPDMTIVAFGSDVV 451 (541)
Q Consensus 383 ~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~f~~~~~ 451 (541)
.+ ..++.++...+. .+++++..++..++++++.+.|+++. ++++..+....++++..
T Consensus 283 ----~~-----~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~--- 350 (394)
T 2ay1_A 283 ----PP-----FHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA--- 350 (394)
T ss_dssp ----CC-----CHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCC---
T ss_pred ----CC-----hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCC---
Confidence 01 113333333332 24677888888999999999998763 36655433344444433
Q ss_pred CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHH
Q 009181 452 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRES 498 (541)
Q Consensus 452 ~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~ 498 (541)
+...+...+.++|+.+.. .+|++++..+.+++++++++|+++
T Consensus 351 ~~~~~~~~l~~~gi~v~~-----~~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 351 TPEQVKRIKEEFGIYMVG-----DSRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp CHHHHHHHHHHHCEECCT-----TCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCEEecC-----CCeEEeecCCHhhHHHHHHHHHHc
Confidence 345677778888987753 379999854559999999999876
No 192
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.86 E-value=2.1e-20 Score=194.49 Aligned_cols=279 Identities=15% Similarity=0.091 Sum_probs=190.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH--
Q 009181 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-- 243 (541)
Q Consensus 166 ~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~-- 243 (541)
.|...++| +.++++.|.+. + +++++|++|+..+ .++. ++| ++|+++.+.|.+....+
T Consensus 66 ~p~~~~l~----~~la~l~g~~~------~--~~~~sG~~Ai~~~-~~l~-----~~g---d~Vi~~~~~y~~~~~~~~~ 124 (400)
T 3nmy_A 66 NPTRFAYE----RCVAALEGGTR------A--FAFASGMAATSTV-MELL-----DAG---SHVVAMDDLYGGTFRLFER 124 (400)
T ss_dssp CHHHHHHH----HHHHHHHTCSE------E--EEESSHHHHHHHH-HTTS-----CTT---CEEEEESSCCHHHHHHHHH
T ss_pred CHHHHHHH----HHHHHHhCCCC------E--EEecCHHHHHHHH-HHHc-----CCC---CEEEEeCCCchHHHHHHHH
Confidence 34444444 47888888762 2 6777779998874 3322 256 89999999998655543
Q ss_pred ---hhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchhhhh
Q 009181 244 ---QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (541)
Q Consensus 244 ---~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~ 320 (541)
..+|++++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|++||+++++|++|+.+..
T Consensus 125 ~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~--- 196 (400)
T 3nmy_A 125 VRRRTAGLDFSFVDLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPML--- 196 (400)
T ss_dssp THHHHHCCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHH---
T ss_pred hhHhhcCeEEEEECCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc---
Confidence 3369999999886 89999999999999999999999999999999999999999999999999975443
Q ss_pred hhcCCCCCCCCcCCCCceEEEeCCCCCCCCCC-C-ce-EEEEecccccccccccccccCCCccCCCcccCCCCCchHHHH
Q 009181 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK-G-TS-VVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397 (541)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~-g-~g-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~ 397 (541)
. .+++ .|+|+++.+++|++.+|. . .| +++.+++++..........+ |.... ...+
T Consensus 197 ~------~~~~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~-----------g~~~~--~~~a 254 (400)
T 3nmy_A 197 Q------RPLS---LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI-----------GGVQG--PFDS 254 (400)
T ss_dssp C------CGGG---GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH-----------CCBCC--HHHH
T ss_pred C------Chhh---cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc-----------CCCCC--HHHH
Confidence 1 1222 378999999999966552 2 34 45555554433221111110 11111 3367
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCC-----------------CeeEEEEecCCC--CHHHHHH
Q 009181 398 WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP-----------------DMTIVAFGSDVV--DIFEVND 458 (541)
Q Consensus 398 ~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~-----------------~~~~v~f~~~~~--~~~~l~~ 458 (541)
|++++. .+.+....++..++++++.+.|++.|.+.-+..| ...+++|.+++. ...++.+
T Consensus 255 ~~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~ 332 (400)
T 3nmy_A 255 FLALRG--LKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCE 332 (400)
T ss_dssp HHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHH
T ss_pred HHHHHh--HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHH
Confidence 777654 3456778888899999999999999888755333 256889988642 2334444
Q ss_pred HHHhCCc--e--------ec-----c----------CC-CCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 459 IMSSKGW--H--------LN-----P----------LQ-RPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 459 ~l~~~G~--~--------~~-----~----------~~-~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
.+.--+. . .. . .+ .++.+|+|++. |+++.++++|+++++
T Consensus 333 ~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 333 KTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp HCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred cCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 4432220 0 00 0 01 23689999998 455666777777765
No 193
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.86 E-value=2.8e-20 Score=204.36 Aligned_cols=299 Identities=12% Similarity=0.073 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEE
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~ 252 (541)
-.++++.+++++|.+.. + ++++|++.||..++.++.+ +| |+|+++.++|.|+..++.+.|++++.
T Consensus 197 i~eaE~~lA~~fGa~~a-----~--~v~nGts~An~~ai~al~~-----pG---D~VLv~r~~H~S~~~~l~lsGa~pv~ 261 (715)
T 3n75_A 197 HKEAEQYIARVFNADRS-----Y--MVTNGTSTANKIVGMYSAP-----AG---STILIDRNCHKSLTHLMMMSDVTPIY 261 (715)
T ss_dssp HHHHHHHHHHHHTCSEE-----E--EESSHHHHHHHHHHHHHCC-----TT---CEEEEESSCCHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHHhCCCCc-----e--EECcHHHHHHHHHHHHhCC-----CC---CEEEECCCccHHHHHHHHHcCCEEEE
Confidence 34566699999999754 2 6788888999999988753 77 99999999999999999999999999
Q ss_pred eeCCC-CCc----c-----CHHHHHHhhccC--ce---EEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcccchh
Q 009181 253 VPVDK-EFR----A-----DVKAIKKYINRN--TV---LIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL 317 (541)
Q Consensus 253 v~~~~-~~~----~-----d~~~Le~~i~~~--t~---~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~~~ 317 (541)
++.+. ++. + |+++|+++++++ ++ ++++++| |++|.+.|+++|+++|++++ ++||+|||+.+.
T Consensus 262 v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~ 338 (715)
T 3n75_A 262 FRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTN 338 (715)
T ss_dssp ECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGG
T ss_pred EeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccc
Confidence 98753 333 3 899999999854 34 7999999 88999999999999998763 899999987642
Q ss_pred hhhhhcCCCCCCCCcCCC--CceEE---EeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCc
Q 009181 318 PFAKKLGYPIPPFDFSVQ--GVTSI---SVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (541)
Q Consensus 318 ~f~~~~g~~~p~~~~~~~--gvdsi---s~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~ 392 (541)
|.... |....... ++|.+ +.++||++.++.++|++.+++. .....+.....+ ...++.+..
T Consensus 339 -f~~~~----~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-i~~~~~~~~~~~--------~~STSpsy~ 404 (715)
T 3n75_A 339 -FSPIY----EGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMM--------HTTTSPHYG 404 (715)
T ss_dssp -GSGGG----TTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-CCHHHHHHHHHH--------TSCSSCCHH
T ss_pred -cCCcc----ccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-hhHHHHHHHHHh--------hcCCCchHH
Confidence 11110 10111111 24544 8899999888888998888765 211111111111 112234445
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCC------eEEecCCC--------------------------
Q 009181 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPE------LFIIGRPD-------------------------- 440 (541)
Q Consensus 393 ~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~------~~v~~~~~-------------------------- 440 (541)
+++++-++++.+....-.+..++..++++++++.|+++++ ++++++..
T Consensus 405 ~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~ 484 (715)
T 3n75_A 405 IVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHM 484 (715)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSE
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcc
Confidence 5778888887776433456789999999999999988753 56665321
Q ss_pred ---eeEEEEecC-----------CCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 441 ---MTIVAFGSD-----------VVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 441 ---~~~v~f~~~-----------~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
..=+.+..+ +.+..++.+.|.++|+.+.-.. ...+-+-++..++ +++++++++|.++-+...+
T Consensus 485 ~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d-~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~~~ 562 (715)
T 3n75_A 485 YLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG-PYNLLFLFSIGIDKTKALSLLRALTDFKRAFDL 562 (715)
T ss_dssp EECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE-TTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC-CCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 011222222 2356789999998887654332 3456666666544 8999999999988766543
No 194
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.86 E-value=1.9e-19 Score=189.47 Aligned_cols=294 Identities=15% Similarity=0.074 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC--CCeEEecCCccch-HHHHHhhcC
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSAHSA-YDKAAQYFN 247 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~--~~~vi~~~~~h~s-~~ka~~~~G 247 (541)
....++.+.+++++|. +. + ++|+|||+|+..|+++++.+....+|+. +++|++.++.|.. ...++...|
T Consensus 107 ~~~~~l~~~la~~~g~--~~----v--~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g 178 (433)
T 1z7d_A 107 VPLGICERYLTNLLGY--DK----V--LMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISAST 178 (433)
T ss_dssp HHHHHHHHHHHHHHTC--SE----E--EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-------------
T ss_pred HHHHHHHHHHHhhcCC--Ce----E--EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccC
Confidence 3445566788888874 22 5 8999999999999999875432223331 3788888876554 444444444
Q ss_pred ------------CeEEEeeCCCCCccCHHHHHHhh-ccCceEEEeecCCCCCcccc----CHHHHHHHHHHcCCEEEEeC
Q 009181 248 ------------IKLWRVPVDKEFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDL 310 (541)
Q Consensus 248 ------------~~v~~v~~~~~~~~d~~~Le~~i-~~~t~~vv~~~~~~~~G~id----~i~~I~~la~~~~i~lhvD~ 310 (541)
..+..+|.+ |+++|++++ ++++++|+++..++++|.+. ++++|.++|++||++|++|+
T Consensus 179 ~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 253 (433)
T 1z7d_A 179 TKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE 253 (433)
T ss_dssp -------------CEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 355666653 899999999 57788888887777789865 69999999999999999999
Q ss_pred CcccchhhhhhhcCCCCCCCCcCC--CCceEEEeCCCCCCCCC-CCceEEEEecccccccccccccccCCCccCCCcccC
Q 009181 311 CLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG 387 (541)
Q Consensus 311 a~gg~~~~f~~~~g~~~p~~~~~~--~gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 387 (541)
+|.|+.. .|. .+.+.. ..+|++++ .|.+.++ ..+|+++.++ ++...... ...++ +..+
T Consensus 254 v~~g~g~-----~g~---~~~~~~~~~~~di~t~--sK~l~~G~~~~G~v~~~~-~~~~~l~~---~~~~~-----t~~~ 314 (433)
T 1z7d_A 254 VQTGLGR-----TGK---LLCVHHYNVKPDVILL--GKALSGGHYPISAVLAND-DIMLVIKP---GEHGS-----TYGG 314 (433)
T ss_dssp TTTTTTT-----TSS---SSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECH-HHHTTCCT---TCCCC-----TTTT
T ss_pred CccCCCc-----CCc---chhhHhcCCCCCEEEE--CccccCCCCCeEEEEECH-HHHhhhcc---ccccc-----cCCC
Confidence 9986532 111 111111 23577755 5985544 4588877654 43322110 00001 1111
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----CCeEEecCCCeeEEEEecCC--CCHHHHHHHHH
Q 009181 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI----PELFIIGRPDMTIVAFGSDV--VDIFEVNDIMS 461 (541)
Q Consensus 388 sr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~f~~~~--~~~~~l~~~l~ 461 (541)
+ ....++..++++.+.. .+..++..++++++.+.|+++ |.+..+ ++...++++.+.+ .+..++.+.|.
T Consensus 315 ~--~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~l~ 388 (433)
T 1z7d_A 315 N--PLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFKNELVNVLDICLKLK 388 (433)
T ss_dssp C--HHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECTTTCCHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEccChhHHHHHHHHHH
Confidence 1 0112234444544432 256777778888888888754 333322 2345667777654 25788999999
Q ss_pred hCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHH
Q 009181 462 SKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 462 ~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~ 503 (541)
++|+.+... .++.+|++++..++ ++++++++.|+++++++.
T Consensus 389 ~~Gv~v~~~-~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 389 ENGLITRDV-HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 430 (433)
T ss_dssp HTTEECCEE-TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HCCeEEecC-CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999877653 25789999886554 999999999999988764
No 195
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.85 E-value=5.9e-20 Score=192.92 Aligned_cols=304 Identities=17% Similarity=0.141 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC-CCCeEEecCCccchHHHHHhhcCC-
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNI- 248 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi-~~~~vi~~~~~h~s~~ka~~~~G~- 248 (541)
....++.+++++.++.+.++ + ++|+||++|+..++++++..... +|- .+++|++.++.|+.+...+...+.
T Consensus 72 ~~~~~l~~~la~~~~~~~~~----v--~~~~gg~ea~~~al~~~~~~~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 144 (430)
T 3i4j_A 72 DVLEEYAGRLARFVGLPTFR----F--WAVSGGSEATESAVKLARQYHVE-RGEPGRFKVITRVPSYHGASLGSLAASGM 144 (430)
T ss_dssp HHHHHHHHHHHHHTTCTTCE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTC--------------
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCcHHHHHHHHHHHHHHHHHh-cCCCCCcEEEEEeCCcCCCCcccccccCc
Confidence 44556777999999877665 6 99999999999999998864332 221 137899888887766554433332
Q ss_pred --------------eEEEeeCCCC---CccCHHHHHHhhc----cCceEEEeecCCC-CCccccC----HHHHHHHHHHc
Q 009181 249 --------------KLWRVPVDKE---FRADVKAIKKYIN----RNTVLIVGSAPGF-PHGIIDP----IQELGELALSH 302 (541)
Q Consensus 249 --------------~v~~v~~~~~---~~~d~~~Le~~i~----~~t~~vv~~~~~~-~~G~id~----i~~I~~la~~~ 302 (541)
.+..+|.++. +..|+++|+++++ +++.+|+++.+++ ++|.+.+ +++|.++|++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~ 224 (430)
T 3i4j_A 145 GARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA 224 (430)
T ss_dssp -----------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred cccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence 3445555433 3457799999997 4567777777777 8898776 99999999999
Q ss_pred CCEEEEeCCcccchhhhhhhcCCCCCCCCcCCC-C--ceEEEeCCCCCCCCC-CCceEEEEecccccccccccccccCCC
Q 009181 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ-G--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGG 378 (541)
Q Consensus 303 ~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~-g--vdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~ 378 (541)
|++||+|++|.++... |. .+..... + .|.++++ |.+.++ ..+|+++. ++++.........
T Consensus 225 ~~~li~DEv~~~~~~~-----g~---~~~~~~~~~~~~di~t~s--K~l~~G~~r~G~~~~-~~~i~~~~~~~~~----- 288 (430)
T 3i4j_A 225 GIIFIADEVMSGMGRC-----GS---PLALSRWSGVTPDIAVLG--KGLAAGYAPLAGLLA-APQVYETVMGGSG----- 288 (430)
T ss_dssp TCEEEEECTTTTTTTT-----SS---SSGGGGTTTCCCSEEEEC--GGGTTTSSCCEEEEE-CHHHHHHHHHTTC-----
T ss_pred CCEEEEechhhCCCcc-----cc---hhhhhhhcCCCCcEEEEc--ccccCCccccEEEEE-CHHHHHHHhccCC-----
Confidence 9999999999876431 11 1111111 2 3666655 885444 55788766 4444332211000
Q ss_pred ccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEecCCCeeEEEEecCCC---
Q 009181 379 LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIK----EIPELFIIGRPDMTIVAFGSDVV--- 451 (541)
Q Consensus 379 ~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~----~~~~~~v~~~~~~~~v~f~~~~~--- 451 (541)
+...++.......++.+++..+....-++..++..++.+++++.|+ ++|++..+ ++...++.+...+.
T Consensus 289 ----~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 363 (430)
T 3i4j_A 289 ----AFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGVVLGDLATG 363 (430)
T ss_dssp ----BCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEC-----
T ss_pred ----cccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEecccccc
Confidence 0011111111233444444433211113444555555555555544 45666655 23455666655322
Q ss_pred -------CHHHHHHHHHhCCceeccC-----C-CCCeEEEEecCCC-HHHHHHHHHHHHHHHHHH
Q 009181 452 -------DIFEVNDIMSSKGWHLNPL-----Q-RPNSIHICVTLQH-VAVVDVFLRDLRESVETV 502 (541)
Q Consensus 452 -------~~~~l~~~l~~~G~~~~~~-----~-~~~~iRi~~~~~~-~e~id~~i~~L~~~~~~l 502 (541)
...++.+.|.++|+.+... + .++++|++++... .+++++++++|+++++++
T Consensus 364 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 364 QAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp -------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2367889999999876543 1 2468999988554 499999999999998765
No 196
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.85 E-value=1.4e-19 Score=190.86 Aligned_cols=290 Identities=15% Similarity=0.086 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCC--CCeEEecCCcc-chHHHHHhhcC--
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSAH-SAYDKAAQYFN-- 247 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~--~~~vi~~~~~h-~s~~ka~~~~G-- 247 (541)
..++.+.+++++|. +. + ++|+||++|+..++++++.+....+|+. +++|++.++.| .+...++...|
T Consensus 120 ~~~l~~~la~~~g~--~~----v--~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~ 191 (439)
T 2oat_A 120 LGEYEEYITKLFNY--HK----V--LPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDP 191 (439)
T ss_dssp HHHHHHHHHHHHTC--SE----E--EEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred HHHHHHHHHHhcCC--CE----E--EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCCh
Confidence 34566678888874 22 5 8999999999999999986443323332 36788877664 55555666555
Q ss_pred ----------CeEEEeeCCCCCccCHHHHHHhhc-cCceEEEeecCCCCCcccc----CHHHHHHHHHHcCCEEEEeCCc
Q 009181 248 ----------IKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLCL 312 (541)
Q Consensus 248 ----------~~v~~v~~~~~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id----~i~~I~~la~~~~i~lhvD~a~ 312 (541)
.++..+|.+ |+++|+++++ +++++|+++..++++|.+. ++++|.++|++||++||+|++|
T Consensus 192 ~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~ 266 (439)
T 2oat_A 192 TSYDGFGPFMPGFDIIPYN-----DLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ 266 (439)
T ss_dssp HHHTTSCSCCTTEEEECSS-----CHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred hcccCCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 467777764 8999999994 6788888877777789765 6999999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCCCcCCC--CceEEEeCCCCCCCCC-CCceEEEEecccccccccccccccCCCccCCCcccCCC
Q 009181 313 GGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (541)
Q Consensus 313 gg~~~~f~~~~g~~~p~~~~~~~--gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr 389 (541)
.|+.. .|. .+.+... ..|++++ +|.+.++ ..+|+++.++ ++...... ...+ .+..++
T Consensus 267 ~g~g~-----~g~---~~~~~~~~~~~Di~t~--sK~l~~G~~~~G~v~~~~-~~~~~l~~---~~~~-----~t~~~~- 326 (439)
T 2oat_A 267 TGLAR-----TGR---WLAVDYENVRPDIVLL--GKALSGGLYPVSAVLCDD-DIMLTIKP---GEHG-----STYGGN- 326 (439)
T ss_dssp TTTTT-----TSS---SSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECH-HHHTTSCT---TSSC-----CSSTTC-
T ss_pred cCCcc-----CCc---chhHHHhCCCCcEEEe--cccccCCCCCeEEEEECH-HHHhccCC---CCcc-----cCCCcC-
Confidence 76532 111 1111112 3477654 5985554 4589877764 33322110 0000 111111
Q ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe--cCCCeeEEEEecCC---CCHHHHHHHHHhCC
Q 009181 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFII--GRPDMTIVAFGSDV---VDIFEVNDIMSSKG 464 (541)
Q Consensus 390 ~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~--~~~~~~~v~f~~~~---~~~~~l~~~l~~~G 464 (541)
....++..++++.+.. .+..++..++++++.+.|+++ ++.++ .++...++++.+.+ .+..++.+.|.++|
T Consensus 327 -~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~G 401 (439)
T 2oat_A 327 -PLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNG 401 (439)
T ss_dssp -HHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCC
Confidence 0112344445544433 356788888999999999886 33221 12345666776654 35778999999999
Q ss_pred ceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 465 WHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 465 ~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
+.+... .++.+|++++..++ ++++++++.|++++++
T Consensus 402 v~v~~~-~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 402 LLAKPT-HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EECCBS-SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred eEEecC-CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 877653 35789999876554 9999999999998754
No 197
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.85 E-value=6.7e-20 Score=191.16 Aligned_cols=304 Identities=12% Similarity=0.127 Sum_probs=196.4
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHhCCC-----CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCC
Q 009181 160 PLHLDIFQSVARFEAEVIAMTAALLGNK-----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234 (541)
Q Consensus 160 ~~~~~~~~~~~~~e~ev~~~la~l~g~~-----~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~ 234 (541)
..+|...++..++++++.+++ .|.. +++ +....|.||++|+..+..+++.. .++| ++|+++.+
T Consensus 72 ~~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~~----i~~~~~~~g~ga~~~~~~~~~~~--~~~g---d~Vlv~~p 139 (409)
T 4eu1_A 72 NMDYAPVTGIASFVEEAQKLC---FGPTCAALRDGR----IASCQTLGGTGALRIGGDLLNRF--VANC---NRIYGPDV 139 (409)
T ss_dssp CCCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTTC----EEEEEESHHHHHHHHHHHHGGGT--SSSC---CEEEEESS
T ss_pred cccCCCCCCcHHHHHHHHHHH---cCCCchhhccCc----eeeeecccchHHHHHHHHHHHHh--cCCC---CEEEEeCC
Confidence 345544566666666555554 3544 333 42234999999999876655321 1355 89999999
Q ss_pred ccchHHHHHhhcCCeEEEeeCC--CCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC---HHHHHHHHHHcCCEE
Q 009181 235 AHSAYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (541)
Q Consensus 235 ~h~s~~ka~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~l 306 (541)
+|+++...++..|++++.+|++ +++.+|+++|+++++ ++++++++++|+||||.+.+ +++|+++|++||+++
T Consensus 140 ~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 219 (409)
T 4eu1_A 140 GYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIP 219 (409)
T ss_dssp CCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred CcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEE
Confidence 9999999999999999999983 478899999999996 35678888999999999987 556999999999999
Q ss_pred EEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEE--EEeccc----ccccccccc-cccCC
Q 009181 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVV--LYRNRE----IRKHQFVAV-TEWSG 377 (541)
Q Consensus 307 hvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~l--l~~~~~----~~~~~~~~~-~~~~~ 377 (541)
++|++|+++...-...-+..+..+ .....-.++..+++|. ++++| +|++ ++.+++ +........ ..|..
T Consensus 220 i~De~y~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~-~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~ 297 (409)
T 4eu1_A 220 FVDMAYQGFATGQLDYDAFVPRHL-VDMVPNLIVAQSFSKN-FGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNN 297 (409)
T ss_dssp EEEESCTTTTTSCHHHHTHHHHHH-HTTSSCCEEEEECTTT-SSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSS
T ss_pred EEeccccccccCCcccchHHHHHH-HhhCCcEEEEecCccc-ccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCC
Confidence 999999877531000000000000 0111123556688898 45444 7886 566655 322211100 11110
Q ss_pred CccCCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhhcCC--C-eEEecCCCeeEEEE
Q 009181 378 GLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIKEIP--E-LFIIGRPDMTIVAF 446 (541)
Q Consensus 378 ~~~~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~--~-~~v~~~~~~~~v~f 446 (541)
....+++++...+. .+.+++..++..++++++.+.|++++ + +++.. |..+++.|
T Consensus 298 --------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~ 362 (409)
T 4eu1_A 298 --------------PPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAY 362 (409)
T ss_dssp --------------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEE
T ss_pred --------------CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEE
Confidence 01224444444443 34467788889999999999999862 1 55443 34444444
Q ss_pred ecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHH
Q 009181 447 GSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESV 499 (541)
Q Consensus 447 ~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~ 499 (541)
. +.+...+...+.++|+.+.. ..|++++..+++++++++++|++++
T Consensus 363 ~--~~~~~~~~~ll~~~gv~v~p-----~~Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 363 T--GLTREQVELLRSEYHIYMTL-----NGRAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp C--CCCHHHHHHHHHHHCEECCT-----TCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred e--CCCHHHHHHHHHcCCEEEcC-----CCEEEEEecCHhhHHHHHHHHHHHh
Confidence 2 22333333344466887664 2599998877788999999998875
No 198
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.85 E-value=1.2e-19 Score=192.10 Aligned_cols=304 Identities=14% Similarity=0.074 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcC-CCCCeEEecCCccchHHHHHhhc----
Q 009181 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSAHSAYDKAAQYF---- 246 (541)
Q Consensus 172 ~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~G-i~~~~vi~~~~~h~s~~ka~~~~---- 246 (541)
...+++++++++++.+.+. + ++|+||++|+..|+++++.+...+ | -.+++|++.+..+......+...
T Consensus 119 ~~~~L~e~la~~~~~~~~~----v--~~~~sGseA~~~Alk~a~~~~~~~-g~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 191 (457)
T 3tfu_A 119 PAARLAKLLVDITPAGLDT----V--FFSDSGSVSVEVAAKMALQYWRGR-GLPGKRRLMTWRGGYHGDTFLAMSICDPH 191 (457)
T ss_dssp HHHHHHHHHHHHSSTTEEE----E--EEESSHHHHHHHHHHHHHHHHHHT-TCTTCCEEEEETTCCCCSSHHHHTTSCCC
T ss_pred HHHHHHHHHHHhCCCCcCE----E--EEeCcHHHHHHHHHHHHHHHHHhc-CCCCCceEEEEcCCcCCccHHhhcccCCc
Confidence 3446777999999766554 5 999999999999999998753322 2 12357877766654433222222
Q ss_pred ----------CCeEEEeeCCC--CCccCHHHHHHhhc---cCceEEEeec-CCCCCccccC----HHHHHHHHHHcCCEE
Q 009181 247 ----------NIKLWRVPVDK--EFRADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELGELALSHGTCL 306 (541)
Q Consensus 247 ----------G~~v~~v~~~~--~~~~d~~~Le~~i~---~~t~~vv~~~-~~~~~G~id~----i~~I~~la~~~~i~l 306 (541)
...+..+|... ....|+++|+++++ +++++|+++. +++++|.+.+ +++|.++|++||++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 12344444432 23358999999998 6788888888 8999998876 999999999999999
Q ss_pred EEeCCcccchhhhhhhcCCCCCCCCcCC--CCceEEEeCCCCCCCCC-CCceEEEEecccccccccccccccCCCccCCC
Q 009181 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP 383 (541)
Q Consensus 307 hvD~a~gg~~~~f~~~~g~~~p~~~~~~--~gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (541)
|+|++|.+|.. .|. .+.+.. ...|.++++ |.+.++ ..+|+++.+++ +........ . + .
T Consensus 272 I~DEv~~g~gr-----~G~---~~a~~~~~~~pdiit~s--K~l~gG~~~lG~v~~~~~-i~~~~~~~~---~-~----~ 332 (457)
T 3tfu_A 272 IFDEIATGFGR-----TGA---LFAADHAGVSPDIMCVG--KALTGGYLSLAATLCTAD-VAHTISAGA---A-G----A 332 (457)
T ss_dssp EEECTTTTTTT-----TSS---SSTHHHHTCCCSEEEEC--GGGGTTSSCCEEEEEEHH-HHHHHHHSS---S-C----S
T ss_pred EEEcCccCCcc-----ccc---hhHhHhcCCCceEEEEC--hhhhCCCcceEEEEEcHH-HHHHhhccC---C-C----c
Confidence 99999987642 111 111111 124777665 875444 47888777654 322110000 0 0 1
Q ss_pred cccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEecCCCeeEEEEecCC-CCHHHHHHH
Q 009181 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI---PELFIIGRPDMTIVAFGSDV-VDIFEVNDI 459 (541)
Q Consensus 384 ~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~f~~~~-~~~~~l~~~ 459 (541)
...++.++....++.+++..+..-.-++..++..++.+++++.|+++ |++..+ ++...++.+...+ .+..++.+.
T Consensus 333 ~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~~~~~~~~~~~~ 411 (457)
T 3tfu_A 333 LMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECDRPVDLAVATPA 411 (457)
T ss_dssp CCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEESSCCCHHHHHHH
T ss_pred eeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEECCcccHHHHHHH
Confidence 11222222233345555444432112356677777888888888764 455433 2345566666644 367899999
Q ss_pred HHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 460 MSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 460 l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
|.++|+.+...+ +.+|++++...+ +++++++++|+++++++..
T Consensus 412 l~~~Gv~v~~~~--~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~ 455 (457)
T 3tfu_A 412 ALDRGVWLRPFR--NLVYAMPPYICTPAEITQITSAMVEVARLVGS 455 (457)
T ss_dssp HHHTTEECCCBT--TEEEECCCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHCCeEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999998776543 689998876544 9999999999999987654
No 199
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=2e-19 Score=188.36 Aligned_cols=287 Identities=15% Similarity=0.059 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHhCCC-CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccc-hHHHHHhhc---
Q 009181 172 FEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS-AYDKAAQYF--- 246 (541)
Q Consensus 172 ~e~ev~~~la~l~g~~-~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~-s~~ka~~~~--- 246 (541)
...++.+.+++.+|.+ +++ + ++|+||++|+..++++++.. .| ++|+++++.++ ....++...
T Consensus 87 ~~~~l~~~la~~~~~~~~~~----v--~~~~gg~ea~~~ai~~~~~~----~~---~~vi~~~p~yh~~~~~~~~~~~~~ 153 (419)
T 2eo5_A 87 PQLELAKKLVTYSPGNFQKK----V--FFSNSGTEAIEASIKVVKNT----GR---KYIIAFLGGFHGRTFGSISLTASK 153 (419)
T ss_dssp HHHHHHHHHHHHSSCSSCEE----E--EEESSHHHHHHHHHHHHHTT----SC---CEEEEETTCCCCSSHHHHHHCCSC
T ss_pred HHHHHHHHHHHhCCCCcCCE----E--EEeCchHHHHHHHHHHHHHh----hC---CcEEEECCCcCCCCHhhHhhcCCc
Confidence 3455777899999986 444 6 99999999999999987642 13 78988887654 444444322
Q ss_pred ----------CCeEEEeeCCCCCc----------------cCHHHHH-Hhhc-----cCceEEEeecCCCCCccccC---
Q 009181 247 ----------NIKLWRVPVDKEFR----------------ADVKAIK-KYIN-----RNTVLIVGSAPGFPHGIIDP--- 291 (541)
Q Consensus 247 ----------G~~v~~v~~~~~~~----------------~d~~~Le-~~i~-----~~t~~vv~~~~~~~~G~id~--- 291 (541)
+.+++.+|.+++++ +|+++|+ ++++ +++++|+++..++++|.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~ 233 (419)
T 2eo5_A 154 AVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKN 233 (419)
T ss_dssp GGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTT
T ss_pred cccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHH
Confidence 23678888865543 4789999 9987 35666666655567898665
Q ss_pred -HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCC-CCceEEEEeccccccccc
Q 009181 292 -IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQF 369 (541)
Q Consensus 292 -i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~ 369 (541)
+++|.++|++||+++|+|++|.++... |. .-.++......|.++++ |.+.++ .++|+++.+++ +. . +
T Consensus 234 ~l~~l~~l~~~~~~~li~DE~~~~~g~~-----g~-~~~~~~~~~~~d~~t~s--K~~~~G~~riG~~~~~~~-~~-~-~ 302 (419)
T 2eo5_A 234 FFAELQKLAKKYGILLVDDEVQMGLGRT-----GK-LFAIENFNTVPDVITLA--KALGGGIMPIGATIFRKD-LD-F-K 302 (419)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTT-----SS-SSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEEEGG-GC-C-C
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCccC-----cc-hhhHHhcCCCCCEEEec--ccccCCccceEEEEEchH-hh-c-C
Confidence 999999999999999999999876431 10 00011111234677654 875555 77898777654 33 2 1
Q ss_pred ccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC
Q 009181 370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD 449 (541)
Q Consensus 370 ~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~ 449 (541)
. .... .+ ......++.++...+.. +++..+++.++++++.+.|+++ +..+ ++..+++++.+.
T Consensus 303 ~---~~~~-----~t-----~~~n~~~~~aa~aal~~--~~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~i~~~ 364 (419)
T 2eo5_A 303 P---GMHS-----NT-----FGGNALACAIGSKVIDI--VKDLLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWGLEYN 364 (419)
T ss_dssp --------------C-----CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEEEECS
T ss_pred C---cccC-----CC-----CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEEEEEe
Confidence 1 0000 01 11112344444333321 2237788889999999999876 2222 234567777763
Q ss_pred C--CCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 450 V--VDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 450 ~--~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
+ .... +.+.|.++|+.+...+ ++++|++++..++ +++++++++|+++++++
T Consensus 365 ~~~~~~~-~~~~l~~~Gv~v~~~~-~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 365 EKKVRDR-IIGESFKRGLLLLPAG-RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp CHHHHHH-HHHHHHHTTEECEEET-TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cCccHHH-HHHHHHHCCCEEecCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2 1245 8888999998776544 5789999876554 99999999999988754
No 200
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.84 E-value=2.3e-19 Score=190.22 Aligned_cols=309 Identities=12% Similarity=0.048 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC-CCCeEEecCCccchHHHHHhhc---
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYF--- 246 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi-~~~~vi~~~~~h~s~~ka~~~~--- 246 (541)
....++.++++++++.+.+. + ++|+||++|+..|+++++.+... +|. .+++|++.+.+++.....+..+
T Consensus 95 ~~~~~la~~l~~~~~~~~~~----v--~~~~gGseA~~~al~~~~~~~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 167 (460)
T 3gju_A 95 EASITLAKMIIDRAPKGMSR----V--YFGLSGSDANETNIKLIWYYNNV-LGRPEKKKIISRWRGYHGSGVMTGSLTGL 167 (460)
T ss_dssp HHHHHHHHHHHHHSCTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred HHHHHHHHHHHhhCCCCcCE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence 45566778899988766554 6 89999999999999999875432 221 2478888777765533332222
Q ss_pred ----------CCeEEEeeCCCCC-----ccC--------HHHHHHhhc----cCceEEEeecCCCCCccccC----HHHH
Q 009181 247 ----------NIKLWRVPVDKEF-----RAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (541)
Q Consensus 247 ----------G~~v~~v~~~~~~-----~~d--------~~~Le~~i~----~~t~~vv~~~~~~~~G~id~----i~~I 295 (541)
...+..+|....+ .++ +++|+++++ +++++|+++.++++.|.+.+ +++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l 247 (460)
T 3gju_A 168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI 247 (460)
T ss_dssp GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence 1245666643222 123 689999987 56788888888888888665 9999
Q ss_pred HHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCC--CceEEEeCCCCCCCCC-CCceEEEEecccccccccccc
Q 009181 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV 372 (541)
Q Consensus 296 ~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~--gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~ 372 (541)
.++|++||++|++|++|.+|... |. .+..... ..|.++++ |.+.++ ..+|+++.+++ +........
T Consensus 248 ~~l~~~~~~llI~DEv~~g~gr~-----g~---~~~~~~~~~~pdi~t~s--K~l~gG~~~lg~v~~~~~-i~~~~~~~~ 316 (460)
T 3gju_A 248 QAVLKKYDVLLVADEVVTGFGRL-----GT---MFGSDHYGIKPDLITIA--KGLTSAYAPLSGVIVADR-VWQVLVQGS 316 (460)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTT-----SS---SCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHH-HHHHHHHHH
T ss_pred HHHHHHcCCEEEEeccccCCCcc-----cc---cchHhhcCCCCCeeeee--hhhcCCCCCeEEEEECHH-HHHHHhccc
Confidence 99999999999999999876421 10 0111111 23666665 885554 46788776543 322211000
Q ss_pred cccCCCccCCCcccCCCCCchHHHHHHHHHHHh---HHH-HHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEec
Q 009181 373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG---QEG-YLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGS 448 (541)
Q Consensus 373 ~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg---~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~ 448 (541)
..+ .....++......+++.+++..+. .+. +++..+....+.+.|.+.+++.|.+..+ ++...++.+.+
T Consensus 317 ~~~------~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~ 389 (460)
T 3gju_A 317 DKL------GSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV-RGDGMLAAVEF 389 (460)
T ss_dssp HHH------CSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEE
T ss_pred ccc------cccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-eeeeEEEEEEE
Confidence 000 000111111112334444444332 322 2233333333344444555556655544 23345555554
Q ss_pred CCC------------CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 449 DVV------------DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 449 ~~~------------~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
.+. ...++.+.|.++|+.+...+.++.+|++++...+ +++++++++|+++++++.+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 390 VADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp CSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 321 1557889999999877766545799999876555 9999999999999988764
No 201
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.84 E-value=2.7e-19 Score=187.31 Aligned_cols=295 Identities=18% Similarity=0.096 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhCCCC-CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccc-hHHHHHhhcCCe-
Q 009181 173 EAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS-AYDKAAQYFNIK- 249 (541)
Q Consensus 173 e~ev~~~la~l~g~~~-~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~-s~~ka~~~~G~~- 249 (541)
..++++.++++++.+. ++ + ++|+||++|+..+++.++... ++ ++|++.++.|+ ....++...|.+
T Consensus 86 ~~~l~~~la~~~~~~~~~~----v--~~~~g~~~a~~~~~~~a~~~~--~~----~~vi~~~p~y~~~~~~~~~~~g~~~ 153 (426)
T 1sff_A 86 YLELCEIMNQKVPGDFAKK----T--LLVTTGSEAVENAVKIARAAT--KR----SGTIAFSGAYHGRTHYTLALTGKVN 153 (426)
T ss_dssp HHHHHHHHHHHSSCSSCEE----E--EEESSHHHHHHHHHHHHHHHH--TC----CEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred HHHHHHHHHHhCCcccccE----E--EEeCchHHHHHHHHHHHHHhh--CC----CeEEEECCCcCCCchHhhhhcCCcc
Confidence 3456668888883232 33 5 999999999999999654322 12 36777766654 455566666643
Q ss_pred ------------EEEeeCCC-----CCccCHHHHHHhhc-----cCceEEEeec-CCCCCccccC----HHHHHHHHHHc
Q 009181 250 ------------LWRVPVDK-----EFRADVKAIKKYIN-----RNTVLIVGSA-PGFPHGIIDP----IQELGELALSH 302 (541)
Q Consensus 250 ------------v~~v~~~~-----~~~~d~~~Le~~i~-----~~t~~vv~~~-~~~~~G~id~----i~~I~~la~~~ 302 (541)
++.+|++. ++.+|+++|+++++ +++++|+++. ++| +|.+.+ +++|.++|++|
T Consensus 154 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~ 232 (426)
T 1sff_A 154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEH 232 (426)
T ss_dssp TTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHc
Confidence 77788753 34589999999997 4677777744 455 997766 99999999999
Q ss_pred CCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCC
Q 009181 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS 382 (541)
Q Consensus 303 ~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~ 382 (541)
|+++++|++|+++... |. ...++.....+|++++ +|++.++..+|+++.+++ +...... ... .
T Consensus 233 ~~~li~De~~~~~~~~-----g~-~~~~~~~~~~~di~s~--sK~~~~GlriG~~~~~~~-~~~~l~~-------~~~-~ 295 (426)
T 1sff_A 233 GIMLIADEVQSGAGRT-----GT-LFAMEQMGVAPDLTTF--AKSIAGGFPLAGVTGRAE-VMDAVAP-------GGL-G 295 (426)
T ss_dssp TCEEEEECTTTTTTTT-----SS-SSGGGGTTSCCSEEEE--CGGGGTSSCCEEEEEEHH-HHTTSCT-------TSB-C
T ss_pred CCEEEEechhhccCcc-----cc-hhhhhhcCCCCCEEEE--cccccCCCceEEEEEcHH-HHhhhcc-------CCc-C
Confidence 9999999999875321 10 0001111123576654 598433233798777653 3322110 000 0
Q ss_pred CcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEecCC--------
Q 009181 383 PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGSDV-------- 450 (541)
Q Consensus 383 ~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~~~-------- 450 (541)
.+..+ +....+++.++++.+..+ +..+++.++++++++.|++ ++.+..+ ++...++++.+.+
T Consensus 296 ~~~~~--~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 369 (426)
T 1sff_A 296 GTYAG--NPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDGDHNKPD 369 (426)
T ss_dssp CSSSS--CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGGCTTSBC
T ss_pred cCCCC--CHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCC
Confidence 01111 111123444455544332 4566777777888877765 4444333 2345677777632
Q ss_pred -CCHHHHHHHHHhCCceeccCC-CCCeEEEEecCCC-HHHHHHHHHHHHHHHHHHH
Q 009181 451 -VDIFEVNDIMSSKGWHLNPLQ-RPNSIHICVTLQH-VAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 451 -~~~~~l~~~l~~~G~~~~~~~-~~~~iRi~~~~~~-~e~id~~i~~L~~~~~~l~ 503 (541)
.+..++.+.|.++|+.+.... .++++|++++..+ .+++++++++|++++++++
T Consensus 370 ~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 370 AKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 235678899999998765433 3578999998444 4999999999999988764
No 202
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.84 E-value=5.6e-20 Score=195.09 Aligned_cols=316 Identities=10% Similarity=0.093 Sum_probs=189.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCC-CeEEecCCccch-H
Q 009181 162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR-PEMIIPVSAHSA-Y 239 (541)
Q Consensus 162 ~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~-~~vi~~~~~h~s-~ 239 (541)
.+...++..++ ++++++++|.+ . + ++|+|||+|+..|++++++.....+|..+ ++|+++ ..|+. +
T Consensus 69 ~y~~~~~~~~l----~~~la~~~~~~--~----v--~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~ 135 (467)
T 2oqx_A 69 AYSGSRSYYAL----AESVKNIFGYQ--Y----T--IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTT 135 (467)
T ss_dssp CSSSCHHHHHH----HHHHHHHHCCS--E----E--EEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHH
T ss_pred eeccCchhHHH----HHHHHHHhCcC--c----E--EEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccc
Confidence 34445555544 45788888763 2 4 89999999999999999753111114333 667776 56754 3
Q ss_pred HHHHhhcCCeEEEe------eCC----CCCccCHHHHHHhhcc----CceEEEeecCCCCC-cccc---CHHHHHHHHHH
Q 009181 240 DKAAQYFNIKLWRV------PVD----KEFRADVKAIKKYINR----NTVLIVGSAPGFPH-GIID---PIQELGELALS 301 (541)
Q Consensus 240 ~ka~~~~G~~v~~v------~~~----~~~~~d~~~Le~~i~~----~t~~vv~~~~~~~~-G~id---~i~~I~~la~~ 301 (541)
.......|..+... +.+ .++.+|+++|+++|++ +|++|++++++||+ |.+. ++++|+++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~ 215 (467)
T 2oqx_A 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred hhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 34445556665543 222 3567999999999984 79999999999998 7764 48899999999
Q ss_pred cCCEEEEeCCccc-chhhh----hhhcCCCCCCCCcC---CCCceEEEeCCCCCCCCCCCceEEEEecc---cccccccc
Q 009181 302 HGTCLHVDLCLGG-FVLPF----AKKLGYPIPPFDFS---VQGVTSISVDVHKYGLAPKGTSVVLYRNR---EIRKHQFV 370 (541)
Q Consensus 302 ~~i~lhvD~a~gg-~~~~f----~~~~g~~~p~~~~~---~~gvdsis~~~hK~~~~p~g~g~ll~~~~---~~~~~~~~ 370 (541)
||++||+|++++. ..... ....|. +...+. ..++|++++++||++..|.| |+++.+++ +..... .
T Consensus 216 ~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~-~ 291 (467)
T 2oqx_A 216 YDIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTEC-R 291 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHH-H
T ss_pred cCCEEEEEchhhhhhhhhcccccccccCc--cHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHH-H
Confidence 9999999988754 22100 001111 000110 12357888999999655544 55454444 121111 0
Q ss_pred cccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHhhcCCCeEEecCCCeeEEEEecC
Q 009181 371 AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGY-LENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSD 449 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~-~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~ 449 (541)
....+.++. ...+..... ++ +++...-.+.+ ++..++..++++++.+.|+++ ++++. +....++++...
T Consensus 292 ~~~~~~~~~----~~~~~~~~~---~~-~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~ 361 (467)
T 2oqx_A 292 TLCVVQEGF----PTYGGLEGG---AM-ERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAG 361 (467)
T ss_dssp HHHHHTTSS----CCCCCCCHH---HH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHH
T ss_pred HhhhccCCc----ccccchhhh---HH-HHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEech
Confidence 000001110 111222111 11 12221101112 234556678889999999888 78777 555666777653
Q ss_pred ----CCC-----HHHHHHHH-HhCCceeccCC----------------CCCeEEEEecCC-CH-HHHHHHHHHHHHHHHH
Q 009181 450 ----VVD-----IFEVNDIM-SSKGWHLNPLQ----------------RPNSIHICVTLQ-HV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 450 ----~~~-----~~~l~~~l-~~~G~~~~~~~----------------~~~~iRi~~~~~-~~-e~id~~i~~L~~~~~~ 501 (541)
+.+ ..++.+.| .++|+.+...+ ..+.+|++++.. ++ +++++++++|++++++
T Consensus 362 ~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 362 KLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp HHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred hhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 223 34568888 88897654311 126899999865 44 9999999999999877
Q ss_pred HHc
Q 009181 502 VKQ 504 (541)
Q Consensus 502 l~~ 504 (541)
...
T Consensus 442 ~~~ 444 (467)
T 2oqx_A 442 AAN 444 (467)
T ss_dssp GGG
T ss_pred hhh
Confidence 553
No 203
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.84 E-value=3.3e-20 Score=193.03 Aligned_cols=248 Identities=14% Similarity=0.053 Sum_probs=178.2
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEE---cCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecC-CccchHHH---------
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNM---TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDK--------- 241 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~---t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~-~~h~s~~k--------- 241 (541)
++++.+++++|.+.. ++ +++|++|+..++.++.+ +| ++|+++. +.|..+..
T Consensus 63 ~Le~~lA~l~g~e~a--------lv~p~~~sGt~Ai~~al~all~-----~G---D~Vl~~~~~~y~~~~~~~~~~g~~~ 126 (409)
T 3jzl_A 63 TLERVYATVFKTEAA--------LVRPQIISGTHAISTVLFGILR-----PD---DELLYITGQPYDTLEEIVGIRKQGQ 126 (409)
T ss_dssp HHHHHHHHHHTCSEE--------EEETTSCSHHHHHHHHHHHHCC-----TT---CEEEECSSSCCTTHHHHHTSSSSSS
T ss_pred HHHHHHHHHhCCCcE--------EEECCCccHHHHHHHHHHHhcC-----CC---CEEEEeCCCCcHhHHHHHhcccchh
Confidence 455588999998753 44 88999999999988753 66 9999998 88988875
Q ss_pred -HHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeec----CCCCCccccCHHHHHHHHHH--cCCEEEEeCCccc
Q 009181 242 -AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSA----PGFPHGIIDPIQELGELALS--HGTCLHVDLCLGG 314 (541)
Q Consensus 242 -a~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~----~~~~~G~id~i~~I~~la~~--~~i~lhvD~a~gg 314 (541)
.++..|++++.+++++++.+|+++++++++++|++|++++ |+||+|.+.|+++|+++|++ ||+++|||+||+.
T Consensus 127 ~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~ 206 (409)
T 3jzl_A 127 GSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE 206 (409)
T ss_dssp SCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred hHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc
Confidence 3466799999999988999999999999999999999999 99999999999999999999 9999999999986
Q ss_pred chhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCC--CceEEEEeccccccccccc-ccccCCCccCCCcccCCCCC
Q 009181 315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGSRPG 391 (541)
Q Consensus 315 ~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~--g~g~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gsr~~ 391 (541)
++.. .+....|+|+++.++||++.++. ..|+++. ++++....... ...+.+ .. .|..
T Consensus 207 ~~~~-----------~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g-~~-----~g~~-- 266 (409)
T 3jzl_A 207 FVEY-----------QEPPEVGADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLCGYRLTTPGIG-RE-----AGAS-- 266 (409)
T ss_dssp TTSS-----------CCSGGGTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTG-GG-----CCCC--
T ss_pred cccc-----------CCccccCCeEEEECccccCCccCCceEEEEEe-CHHHHHHHHHHhcccccc-cc-----cccc--
Confidence 5421 11223578999999999954432 2465444 55544332111 111111 00 1111
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCee-----EEEEecCCC-CHHHHHHHHHhCC
Q 009181 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMT-----IVAFGSDVV-DIFEVNDIMSSKG 464 (541)
Q Consensus 392 ~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-----~v~f~~~~~-~~~~l~~~l~~~G 464 (541)
...+|++++ |......+.++..++++++++.|+++ ++++. +.... +++|.+.+. ...++++.|....
T Consensus 267 --~~~~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~v~-p~~~~~~~~~i~~i~l~~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 267 --LYSLLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEF-GVEAD-PVWDAPRTDLIQSVSFHNKEKMVAFAQAIQAAS 339 (409)
T ss_dssp --TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCCSSSCCEEECSCHHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCCCCCccEEEEEEeCCHHHHHHHHHHHHhcC
Confidence 111344443 33455678888899999999999998 66774 32323 777777543 4567778888764
No 204
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.84 E-value=4.3e-19 Score=187.67 Aligned_cols=305 Identities=17% Similarity=0.100 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhc-CC
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-NI 248 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~-G~ 248 (541)
.+...++.+++++.++.+.+ + ++|+|||+|+..|+++++.+......-.+++|++.++.++.....+... |.
T Consensus 90 ~~~~~~la~~l~~~~~~~~~-----v--~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 162 (452)
T 3n5m_A 90 HEPAIKLAEKLNEWLGGEYV-----I--FFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQ 162 (452)
T ss_dssp EHHHHHHHHHHHHHHTSCEE-----E--EEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCC
T ss_pred CHHHHHHHHHHHHhCCCCce-----E--EEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCc
Confidence 34556788899999876543 4 8999999999999999986533220001378988888776544333322 21
Q ss_pred ------------eEEEeeCCCCCcc------------CHHHHHHhhc----cCceEEEeecC-CCCCccccC----HHHH
Q 009181 249 ------------KLWRVPVDKEFRA------------DVKAIKKYIN----RNTVLIVGSAP-GFPHGIIDP----IQEL 295 (541)
Q Consensus 249 ------------~v~~v~~~~~~~~------------d~~~Le~~i~----~~t~~vv~~~~-~~~~G~id~----i~~I 295 (541)
.+..++....++. ++++|+++++ +++++|+++.+ +| +|.+.+ +++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l 241 (452)
T 3n5m_A 163 AQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAV 241 (452)
T ss_dssp GGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHH
T ss_pred hhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHH
Confidence 3455554322211 1899999998 56788888888 79 998876 9999
Q ss_pred HHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC--ceEEEeCCCCCCCCC-CCceEEEEecccccccccccc
Q 009181 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV 372 (541)
Q Consensus 296 ~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g--vdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~ 372 (541)
.++|++||++||+|++|.+|.. .|. .+.....+ .|.++++ |.+.++ .++|+++.++ ++.......
T Consensus 242 ~~l~~~~~~llI~DEv~~g~g~-----~g~---~~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~-~i~~~~~~~- 309 (452)
T 3n5m_A 242 HETCQKHGALLISDEVICGFGR-----TGK---AFGFMNYDVKPDIITMA--KGITSAYLPLSATAVKR-EIYEAFKGK- 309 (452)
T ss_dssp HHHHHHHTCEEEEECTTTTTTT-----TSS---SSGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEH-HHHGGGCSS-
T ss_pred HHHHHHcCCEEEEecchhCCCc-----ccc---cchhhhcCCCCCEEeec--ccccCCCcceEEEEECH-HHHHHHhhc-
Confidence 9999999999999999987643 111 11112223 4677765 775445 6788877654 343321100
Q ss_pred cccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEec
Q 009181 373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGS 448 (541)
Q Consensus 373 ~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~ 448 (541)
. .......++..+....++.+++..+....-++..++..++.+++++.|++ .|.+..+. +...++.+.+
T Consensus 310 ~------~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~i~~ 382 (452)
T 3n5m_A 310 G------EYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIR-GKGLLVGIEL 382 (452)
T ss_dssp S------TTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-ESSSCEEEEE
T ss_pred c------CCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-EEEEEEEEEE
Confidence 0 00111112222222334444444443211134455666666666666644 45554442 3334444443
Q ss_pred C--CC--------CHHHHHHHHHhCCceeccCC-----CCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 449 D--VV--------DIFEVNDIMSSKGWHLNPLQ-----RPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 449 ~--~~--------~~~~l~~~l~~~G~~~~~~~-----~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
. .. ...++.+.|.++|+.+...+ .++++|++++..++ +++++++++|++++++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 383 VNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp EEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred ecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 11 13478889999998776554 25799999876655 9999999999998753
No 205
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.84 E-value=1.6e-19 Score=192.08 Aligned_cols=301 Identities=13% Similarity=0.088 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC-CCCeEEecCCccchHHHHHhhcCC-
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNI- 248 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi-~~~~vi~~~~~h~s~~ka~~~~G~- 248 (541)
....++.+.++++++.+.+. + ++++||++|+..|+++++.+... +|. .+++|++.+.++......+...+.
T Consensus 99 ~~~~~lae~l~~~~~~~~~~----v--~~~~sGseA~~~aik~a~~~~~~-~g~~~~~~ii~~~~~yHg~t~~~~~~~~~ 171 (472)
T 3hmu_A 99 VPAIALAQKLAELAPGDLNH----V--FFAGGGSEANDTNIRMVRTYWQN-KGQPEKTVIISRKNAYHGSTVASSALGGM 171 (472)
T ss_dssp HHHHHHHHHHHHHSCTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHSCC
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCcCCCccHHhhhccCC
Confidence 34455777888888765554 5 89999999999999999875432 222 246788877776553333322221
Q ss_pred -----------eEEEeeCCCCCc----cC--------HHHHHHhhc----cCceEEEeecCCCCCccccC----HHHHHH
Q 009181 249 -----------KLWRVPVDKEFR----AD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE 297 (541)
Q Consensus 249 -----------~v~~v~~~~~~~----~d--------~~~Le~~i~----~~t~~vv~~~~~~~~G~id~----i~~I~~ 297 (541)
.+..+|....++ .| +++|+++|+ +++++|++..++++.|.+.+ +++|.+
T Consensus 172 ~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~ 251 (472)
T 3hmu_A 172 AGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQR 251 (472)
T ss_dssp HHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHH
T ss_pred hhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHH
Confidence 455666432111 33 788999886 56788888888888898877 999999
Q ss_pred HHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC--ceEEEeCCCCCCCCC-CCceEEEEecccccccccccccc
Q 009181 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTE 374 (541)
Q Consensus 298 la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g--vdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~ 374 (541)
+|++||++|++|++|.||.. .|. .+.+...| .|+++++ |.+.++ ..+|+++.+++ +.... ..
T Consensus 252 l~~~~gillI~DEv~~gfgr-----~G~---~~a~~~~~v~pdi~t~s--K~l~gg~~plG~v~~~~~-i~~~~-~~--- 316 (472)
T 3hmu_A 252 ICDKYDILLIADEVICGFGR-----TGN---WFGTQTMGIRPHIMTIA--KGLSSGYAPIGGSIVCDE-VAHVI-GK--- 316 (472)
T ss_dssp HHHHTTCEEEEECTTTTTTT-----TSS---SCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHH-HHHHH-TT---
T ss_pred HHHHcCCEEEEEccccCCcc-----cCc---cchhHHhCCCCceeeec--hhhhcCCcceEEEEECHH-HHHhc-cc---
Confidence 99999999999999987743 110 01111112 3677765 875444 56787777543 33221 00
Q ss_pred cCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHhhcC---CCeEEecCCCeeEEEEecCC
Q 009181 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIM-EVSESIQKGIKEI---PELFIIGRPDMTIVAFGSDV 450 (541)
Q Consensus 375 ~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~-~~a~~l~~~L~~~---~~~~v~~~~~~~~v~f~~~~ 450 (541)
.....++..+...+++.+++..+..-.-++..++.. ++.+++++.|+++ |.+..+ ++...++.+.+..
T Consensus 317 -------~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~~~~ 388 (472)
T 3hmu_A 317 -------DEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGMMASIALTP 388 (472)
T ss_dssp -------SCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETTEEEEEECS
T ss_pred -------CCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceEEEEEec
Confidence 001112222222334555544443211235566666 6777777777554 445443 2344555665432
Q ss_pred C---------C----HHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHH
Q 009181 451 V---------D----IFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVK 503 (541)
Q Consensus 451 ~---------~----~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~ 503 (541)
. + ..++.+.|.++|+.+...+ +.+|++++...+ +++++++++|+++++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 389 NKASRAKFASEPGTIGYICRERCFANNLIMRHVG--DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp CGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccchhHHHHHHHHHHHHHCCcEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1 5678899999998776655 799999876655 999999999999987654
No 206
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.84 E-value=2.8e-19 Score=188.98 Aligned_cols=308 Identities=15% Similarity=0.134 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC-CCCeEEecCCccchHHHHHhhc-C-
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYF-N- 247 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi-~~~~vi~~~~~h~s~~ka~~~~-G- 247 (541)
+...++.++++++++.+.+. + ++|+|||+|+..|+++++..... +|. .+++|++.+++|+.....+... |
T Consensus 87 ~~~~~la~~l~~~~~~~~~~----v--~~~~sGseA~~~al~~~~~~~~~-~G~~~~~~vi~~~~~yhg~~~~~~~~~~~ 159 (448)
T 3dod_A 87 VPATQLAETLIDISPKKLTR----V--FYSDSGAEAMEIALKMAFQYWKN-IGKPEKQKFIAMKNGYHGDTIGAVSVGSI 159 (448)
T ss_dssp HHHHHHHHHHHHHSCTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEEC----------------
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCchHHHHHHHHHHHHHHHHh-hCCCCCCEEEEECCCCCCccHHHHHhcCC
Confidence 44556778999998765544 5 99999999999999999874322 221 1378999888876544332222 2
Q ss_pred -----------CeEEEeeCCCCCcc-----------CHHHHHHhhc---cCceEEEeecCC-CCCccccC----HHHHHH
Q 009181 248 -----------IKLWRVPVDKEFRA-----------DVKAIKKYIN---RNTVLIVGSAPG-FPHGIIDP----IQELGE 297 (541)
Q Consensus 248 -----------~~v~~v~~~~~~~~-----------d~~~Le~~i~---~~t~~vv~~~~~-~~~G~id~----i~~I~~ 297 (541)
..+..+|.+..++. |+++|+++++ +++++|+++..+ ++.|.+.+ +++|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~ 239 (448)
T 3dod_A 160 ELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRE 239 (448)
T ss_dssp -------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHH
T ss_pred ccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHH
Confidence 23455666544443 4899999997 457778887777 88887765 999999
Q ss_pred HHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC--ceEEEeCCCCCCCCC-CCceEEEEecccccccccccccc
Q 009181 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTE 374 (541)
Q Consensus 298 la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g--vdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~ 374 (541)
+|++||++|++|++|.++... |. .+.....+ .|.++++ |.+.++ ..+|+++.+++ +..........
T Consensus 240 l~~~~~~~lI~DEv~~g~g~~-----g~---~~a~~~~~~~~di~t~s--K~l~~G~~~ig~v~~~~~-~~~~~~~~~~~ 308 (448)
T 3dod_A 240 LCTTYDVLMIVDEVATGFGRT-----GK---MFACEHENVQPDLMAAG--KGITGGYLPIAVTFATED-IYKAFYDDYEN 308 (448)
T ss_dssp HHHHTTCEEEEECTTTTTTTT-----SS---SSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEEEHH-HHHTTCSCGGG
T ss_pred HHHHhCCEEEEeccccCCCcc-----cc---hhhhhhcCCCCCEEEec--ccccCCcCceEEEEECHH-HHHHhhhcccc
Confidence 999999999999999876431 11 11111222 3666665 886555 37788776543 33221110000
Q ss_pred cCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---CCCeEEecCCCeeEEEEecCCC
Q 009181 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE---IPELFIIGRPDMTIVAFGSDVV 451 (541)
Q Consensus 375 ~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~---~~~~~v~~~~~~~~v~f~~~~~ 451 (541)
. .....++..+....++.+++..+..-.-++..++..++.+++++.|++ .|.+..+ ++...++++.+.+.
T Consensus 309 ~------~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~ 381 (448)
T 3dod_A 309 L------KTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI-RQLGFMCGAELVRS 381 (448)
T ss_dssp C------CCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEECSB
T ss_pred C------CcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EeeeEEEEEEEccC
Confidence 0 001111122222234444443332111134455555555666555544 4444333 22344556655331
Q ss_pred -C-----------HHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHcC
Q 009181 452 -D-----------IFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQN 505 (541)
Q Consensus 452 -~-----------~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~ 505 (541)
+ ..++.+.|.++|+.+...+ +.+|++++..++ +++++++++|+++++++...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 382 KETKEPYPADRRIGYKVSLKMRELGMLTRPLG--DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp TTTTBCCCGGGCHHHHHHHHHHHTTEECCEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccchhhHHHHHHHHHHHHCCcEEeccC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 1 3678899999998776543 789998876555 99999999999999887643
No 207
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.84 E-value=8.5e-20 Score=192.27 Aligned_cols=299 Identities=12% Similarity=0.016 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHhCCCC-CCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCc-cchHHHHHhhcC
Q 009181 170 ARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN 247 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~-~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~-h~s~~ka~~~~G 247 (541)
.....++.++++++++.+. +. + ++|+||++|+..++++++... ++ ++|++.+.. |.....++...|
T Consensus 85 ~~~~~~l~~~la~~~~~~~~~~----v--~~~~ggsea~~~al~~~~~~~---~~---~~vi~~~~~yhg~~~~~~~~~~ 152 (439)
T 3dxv_A 85 NAPAVTLAERLLASFPGEGTHK----I--WFGHSGSDANEAAYRAIVKAT---GR---SGVIAFAGAYHGCTVGSMAFSG 152 (439)
T ss_dssp EHHHHHHHHHHHHTTTCTTTEE----E--EEESSHHHHHHHHHHHHHHHH---SC---CEEEEETTCCCCSSHHHHCC--
T ss_pred CHHHHHHHHHHHHhCCCCCCCE----E--EEeCCHHHHHHHHHHHHHHHh---CC---CEEEEECCCCCCCcHHHHhhcC
Confidence 3556678889999986554 33 5 999999999999999986432 12 566665555 555555555544
Q ss_pred Ce--------------EEEeeCCCCCcc-----CHHHHHHhh----ccCceEEEeecCCCCCccccC----HHHHHHHHH
Q 009181 248 IK--------------LWRVPVDKEFRA-----DVKAIKKYI----NRNTVLIVGSAPGFPHGIIDP----IQELGELAL 300 (541)
Q Consensus 248 ~~--------------v~~v~~~~~~~~-----d~~~Le~~i----~~~t~~vv~~~~~~~~G~id~----i~~I~~la~ 300 (541)
.. +..+|.+..+.. |+++|++++ .+++++|+++.+++++|.+.+ +++|.++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~ 232 (439)
T 3dxv_A 153 HSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICR 232 (439)
T ss_dssp -----------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred CCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 32 234454432222 799999999 567889999999999999988 999999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCcc
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY 380 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~ 380 (541)
+||++|++|++|+++.. .|... .++......|.+++ .|.+.++..+|+++.+. ++.......
T Consensus 233 ~~~~~li~DE~~~g~g~-----~g~~~-~~~~~~~~~di~s~--sK~~~~G~riG~~~~~~-~~~~~~~~~--------- 294 (439)
T 3dxv_A 233 AHGILVVCDEVKVGLAR-----SGRLH-CFEHEGFVPDILVL--GKGLGGGLPLSAVIAPA-EILDCASAF--------- 294 (439)
T ss_dssp HTTCEEEEECTTTCTTT-----TSSSS-GGGGTTCCCSEEEE--CGGGGTTSCCEEEEEEH-HHHTSCSSS---------
T ss_pred HcCCEEEEeccccCCCc-----Cchhh-HHHhcCCCCCEEEE--cchhcCCcceEEEEECH-HHHhhhcCC---------
Confidence 99999999999987532 11100 11111122466655 48855555688876654 333221100
Q ss_pred CCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEecC-------
Q 009181 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGSD------- 449 (541)
Q Consensus 381 ~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~~------- 449 (541)
..+... ....++.+++..+....-++..++..++.+++++.|++ .+.+..+ ++...++++.+.
T Consensus 295 ----~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ 368 (439)
T 3dxv_A 295 ----AMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMELVCDRQSRE 368 (439)
T ss_dssp ----SCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTE
T ss_pred ----CcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccC
Confidence 000111 11234444444332211145566666666677666654 4555444 234455555541
Q ss_pred -C-CCHHHHHHHHHhCCceeccCC-CCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 450 -V-VDIFEVNDIMSSKGWHLNPLQ-RPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 450 -~-~~~~~l~~~l~~~G~~~~~~~-~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
+ .+..++.+.|.++|+.+...+ .++++|++++..++ +++++++++|+++++++.+
T Consensus 369 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 369 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp ECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred CCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1 135678889999998765543 34789999886655 9999999999999987653
No 208
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.84 E-value=2.5e-19 Score=189.23 Aligned_cols=305 Identities=17% Similarity=0.124 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC-CCCeEEecCCccch-HHHHHhhcCC
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSA-YDKAAQYFNI 248 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi-~~~~vi~~~~~h~s-~~ka~~~~G~ 248 (541)
....++.+.++++++.+.+. + ++|+|||+|+..++++++.+... +|- .+++|++.++.|+. ...++...|.
T Consensus 93 ~~~~~l~~~la~~~~~~~~~----v--~~~~ggsea~~~al~~~~~~~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~g~ 165 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNLNH----V--FFTDSGSECALTAVKMVRAYWRL-KGQATKTKMIGRARGYHGVNIAGTSLGGV 165 (449)
T ss_dssp HHHHHHHHHHHTTSSTTEEE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEcCcHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCCChhhhhccCC
Confidence 34456777888888766554 5 89999999999999998764422 111 13788887666544 4455555442
Q ss_pred ------------eEEEeeCCCCCc-----cC--------HHHHHHhhc----cCceEEEeecCCCCCccccC----HHHH
Q 009181 249 ------------KLWRVPVDKEFR-----AD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (541)
Q Consensus 249 ------------~v~~v~~~~~~~-----~d--------~~~Le~~i~----~~t~~vv~~~~~~~~G~id~----i~~I 295 (541)
.+..++++..+. +| +++|+++++ +++++|+++..++++|.+.| +++|
T Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l 245 (449)
T 3a8u_X 166 NGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRN 245 (449)
T ss_dssp HHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred hhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHH
Confidence 355666543222 46 999999997 46777777766677998877 9999
Q ss_pred HHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCC--CCceEEEeCCCCCCCCC-CCceEEEEecccccccccccc
Q 009181 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV 372 (541)
Q Consensus 296 ~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~--~gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~ 372 (541)
.++|++||++|++|++|.++.. .|. .+.+.. ...|+++++ |.+.++ ..+|+++.++ ++........
T Consensus 246 ~~l~~~~~~~li~Dev~~~~g~-----~g~---~~~~~~~~~~~di~s~s--K~l~~G~~~~G~~~~~~-~~~~~l~~~~ 314 (449)
T 3a8u_X 246 REICNQHNILLVFDEVITGFGR-----TGS---MFGADSFGVTPDLMCIA--KQVTNGAIPMGAVIAST-EIYQTFMNQP 314 (449)
T ss_dssp HHHHHHHTCEEEEECTTTTTTT-----TSS---SSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEEEH-HHHHHHHTCS
T ss_pred HHHHHHhCCEEEEeccccCccc-----cCc---chhhhhcCCCCCEEEEc--ccccCCCCceEEEEECH-HHHHHhhccC
Confidence 9999999999999999976532 110 011111 123666554 884432 3488877764 4432211110
Q ss_pred cccCCCccCCCcccCCCCCch---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe--cCCCeeEEEEe
Q 009181 373 TEWSGGLYVSPTVAGSRPGGL---IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFII--GRPDMTIVAFG 447 (541)
Q Consensus 373 ~~~~~~~~~~~~~~gsr~~~~---~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~--~~~~~~~v~f~ 447 (541)
..+... ....+...... .+++.++++.+.. .+..++..++.+++++.|++++++.++ .++...++++.
T Consensus 315 ~~~~~~----~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~ 387 (449)
T 3a8u_X 315 TPEYAV----EFPHGYTYSAHPVACAAGLAALCLLQK---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQ 387 (449)
T ss_dssp SCTTSC----SSCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEE
T ss_pred cccccc----cccccCCCcccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEE
Confidence 000000 00111111111 2233444443332 256778888888999988875322211 12345677777
Q ss_pred cCCC------CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 448 SDVV------DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 448 ~~~~------~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
+.+. +..++.+.|.++|+.+...+ +.+|++++..++ +++++++++|+++++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 388 IAPRDGDAIVRPFEAGMALWKAGFYVRFGG--DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp ECCBTTBSSHHHHHHHHHHHHHTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EecCcccccccHHHHHHHHHHCCcEEecCC--CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 6532 12368899999998776543 789999875544 99999999999998764
No 209
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.83 E-value=9.6e-19 Score=186.25 Aligned_cols=309 Identities=14% Similarity=0.080 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcC-CCCCeEEecCCccchHHHHHhhc-C
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSAHSAYDKAAQYF-N 247 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~G-i~~~~vi~~~~~h~s~~ka~~~~-G 247 (541)
.+...++.++++++++.+.+. + ++++||++|+..|+++++.+... +| ..+++|++.++++......+... |
T Consensus 96 ~~~~~~la~~l~~~~~~~~~~----v--~~~~sGseA~~~Aik~a~~~~~~-~g~~~~~~vi~~~~~yHg~~~~~~~~~~ 168 (476)
T 3i5t_A 96 TSPAARLAEKIATLTPGDLNR----I--FFTTGGSTAVDSALRFSEFYNNV-LGRPQKKRIIVRYDGYHGSTALTAACTG 168 (476)
T ss_dssp CHHHHHHHHHHHTTSSTTCCE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHTCC
T ss_pred CHHHHHHHHHHHhcCCCCcCE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCcCcCChhhccccC
Confidence 345566788999998765554 5 99999999999999999875433 23 12468888777766544333322 2
Q ss_pred C------------eEEEeeCCCCC---ccC--------HHHHHHhhc----cCceEEEeecCCCCCccccC----HHHHH
Q 009181 248 I------------KLWRVPVDKEF---RAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG 296 (541)
Q Consensus 248 ~------------~v~~v~~~~~~---~~d--------~~~Le~~i~----~~t~~vv~~~~~~~~G~id~----i~~I~ 296 (541)
. .+..++....+ ..| +++|+++++ +++++|+++.++++.|.+.+ +++|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~ 248 (476)
T 3i5t_A 169 RTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFK 248 (476)
T ss_dssp CGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred ChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 1 24445432211 122 789999886 46788999988888887655 99999
Q ss_pred HHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcC-CCC--ceEEEeCCCCCCCCC-CCceEEEEecccccccccccc
Q 009181 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS-VQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV 372 (541)
Q Consensus 297 ~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~-~~g--vdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~ 372 (541)
++|++||++|++|++|.||.. .|. .+.+. ..| .|+++++ |.+.++ ..+|+++.++ ++........
T Consensus 249 ~lc~~~gillI~DEv~~g~gr-----~G~---~~~~~~~~~v~pdi~t~s--K~l~~G~~plg~v~~~~-~i~~~~~~~~ 317 (476)
T 3i5t_A 249 AICEKHDILYISDEVVTGFGR-----CGE---WFASEKVFGVVPDIITFA--KGVTSGYVPLGGLAISE-AVLARISGEN 317 (476)
T ss_dssp HHHHHTTCEEEEECTTTTTTT-----TSS---SCHHHHTTCCCCSEEEEC--GGGGTTSSCCEEEEECH-HHHHTTSGGG
T ss_pred HHHHHcCCEEEEEecccCCcc-----ccC---ceeeecccCCCcchhhhh--hhhcCCCcCeEEEEECH-HHHHHHhcCC
Confidence 999999999999999987643 111 11111 222 3677765 886555 5678777644 4433211100
Q ss_pred cccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEecCCCeeEEEEecC
Q 009181 373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI---PELFIIGRPDMTIVAFGSD 449 (541)
Q Consensus 373 ~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~f~~~ 449 (541)
..+ .....++..+...+++.+++..+..-.-++..++..++.+++++.|+++ |.+..+ ++...++.+.+.
T Consensus 318 ~~~------~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-~~~G~~~~i~~~ 390 (476)
T 3i5t_A 318 AKG------SWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAET-RSVGLVGCVQCL 390 (476)
T ss_dssp CTT------CEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEE-EEETTEEEEEEC
T ss_pred ccc------ccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceeEEEEe
Confidence 000 0001112222223345554444432111456777777888888887764 444433 233455556554
Q ss_pred CC------------CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHcC
Q 009181 450 VV------------DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQN 505 (541)
Q Consensus 450 ~~------------~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~~ 505 (541)
+. ...++.+.|.++|+.+...+ +.+|++++...+ +++++++++|+++++++.+.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 391 LDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG--DLCVISPPLIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccccchhHHHHHHHHHHHHCCCEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 32 14578889999998776654 799999876555 99999999999999887754
No 210
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.83 E-value=9.6e-20 Score=190.29 Aligned_cols=248 Identities=11% Similarity=0.051 Sum_probs=178.3
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEE---cCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecC-CccchHH----------
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNM---TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYD---------- 240 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~---t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~-~~h~s~~---------- 240 (541)
++++.+++++|.+.. ++ +++|++|+..++.++.+ +| ++|+++. +.|..+.
T Consensus 77 ~Le~~lA~l~g~e~a--------lv~p~~~sGt~Ai~~al~all~-----pG---D~Vl~~~~~~y~~~~~~~g~~~~~~ 140 (427)
T 3i16_A 77 SLDAVYARVFNTESA--------LVRPHFVNGTHALGAALFGNLR-----PG---NTMLSVCGEPYDTLHDVIGITENSN 140 (427)
T ss_dssp HHHHHHHHHHTCSEE--------EEETTCCSHHHHHHHHHHHHCC-----TT---CEEEESSSSCCGGGHHHHTCSCCCS
T ss_pred HHHHHHHHHhCCcce--------EEeCCCccHHHHHHHHHHHHhC-----CC---CEEEEeCCCccHHHHHHHhccccch
Confidence 344589999998753 45 88999999999988753 66 9999998 8888766
Q ss_pred -HHHhhcCCeEEEeeCCCCCccCHHHHHHhhc--cCceEEEeec----CCCCCccccCHHHHHHHHHH--cCCEEEEeCC
Q 009181 241 -KAAQYFNIKLWRVPVDKEFRADVKAIKKYIN--RNTVLIVGSA----PGFPHGIIDPIQELGELALS--HGTCLHVDLC 311 (541)
Q Consensus 241 -ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~--~~t~~vv~~~----~~~~~G~id~i~~I~~la~~--~~i~lhvD~a 311 (541)
..++.+|++++.+++++++.+|+++++++++ ++|++|++++ |+||+|.+.|+++|+++|++ +|+++|||+|
T Consensus 141 ~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a 220 (427)
T 3i16_A 141 MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNC 220 (427)
T ss_dssp SCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred HHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3456679999999998889999999999999 8899999999 99999999999999999999 9999999999
Q ss_pred cccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCC--CCceEEEEeccccccccccc-ccccCCCccCCCcccCC
Q 009181 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGS 388 (541)
Q Consensus 312 ~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p--~g~g~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs 388 (541)
|+.+... .+....|+|+++.++||++.++ ...|+++. ++++....... ..... +...
T Consensus 221 ~~~~~~~-----------~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~-~~~li~~l~~~~~~~~~-g~~~------- 280 (427)
T 3i16_A 221 YGEFMDT-----------KEPTDVGADLIAGSLIKNIGGGIAPTGGYLAG-TKDCIEKTSYRLTVPGI-GGEC------- 280 (427)
T ss_dssp TTTTSSS-----------SCGGGGTCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSCTTT-GGGC-------
T ss_pred Ccccccc-----------CCccccCCeEEEecCcccCCCCCCceEEEEEE-CHHHHHHHHHhcccCcc-CccC-------
Confidence 9865421 1112357899999999994332 33576554 45444332110 01000 1000
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCee-----EEEEecCCC-CHHHHHHHHHh
Q 009181 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMT-----IVAFGSDVV-DIFEVNDIMSS 462 (541)
Q Consensus 389 r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-----~v~f~~~~~-~~~~l~~~l~~ 462 (541)
+.....+|.+++ |......+.++..+++.++++.|+++ ++++. +.... ++.|.+.+. ...++++.|..
T Consensus 281 --~~~~~~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~-p~~~~~~~~~i~~i~l~~~~~~~~f~~~l~~ 354 (427)
T 3i16_A 281 --GSTFGVVRSMYQ--GLFLAPHISMEALKGAILCSRIMELA-GFEVM-PKYDEKRSDIIQSIKFNDKDKLIEFCKGIQT 354 (427)
T ss_dssp --CCCTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCCSSSCEEEECSSHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCCccEEEEEEECCHHHHHHHHHHHhh
Confidence 110112455553 34555788899999999999999998 56774 32333 788877543 35577788877
Q ss_pred CC
Q 009181 463 KG 464 (541)
Q Consensus 463 ~G 464 (541)
..
T Consensus 355 ~~ 356 (427)
T 3i16_A 355 GS 356 (427)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 211
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.83 E-value=3.6e-19 Score=188.75 Aligned_cols=304 Identities=15% Similarity=0.081 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC-CCCeEEecCCccchHHHHHhhcC-
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFN- 247 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi-~~~~vi~~~~~h~s~~ka~~~~G- 247 (541)
.....++.++++++++.+.+. + ++|+||++|+..|+++++.+... +|- .+++|++.+++++.....+...+
T Consensus 93 ~~~~~~la~~l~~~~~~~~~~----v--~~~~ggseA~~~al~~~~~~~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~~ 165 (459)
T 4a6r_A 93 HPAVVELSSLLAEVTPAGFDR----V--FYTNSGSESVDTMIRMVRRYWDV-QGKPEKKTLIGRWNGYHGSTIGGASLGG 165 (459)
T ss_dssp CHHHHHHHHHHHHHSCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHH-TTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred CHHHHHHHHHHHHhCCCCCCE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCccHHHHhhcC
Confidence 345566888999998876554 6 99999999999999999875432 221 14788888877665443333221
Q ss_pred ------------CeEEEeeCCCCCc----cC--------HHHHHHhhc----cCceEEEeecCCCCCccccC----HHHH
Q 009181 248 ------------IKLWRVPVDKEFR----AD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (541)
Q Consensus 248 ------------~~v~~v~~~~~~~----~d--------~~~Le~~i~----~~t~~vv~~~~~~~~G~id~----i~~I 295 (541)
..+..++....++ +| +++|++++. +++.+|+++..+++.|.+.+ +++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l 245 (459)
T 4a6r_A 166 MKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEI 245 (459)
T ss_dssp CTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred ChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence 1445555432111 44 789999987 45677777777777788776 9999
Q ss_pred HHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCC--CCceEEEeCCCCCCCCC-CCceEEEEecccccccccccc
Q 009181 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV 372 (541)
Q Consensus 296 ~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~--~gvdsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~ 372 (541)
.++|++||++||+|++|.+|... |. .+.... ...|+++++ |.+.++ ..+|+++.+ +++.......
T Consensus 246 ~~l~~~~~~llI~DEv~~g~gr~-----G~---~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~-~~i~~~~~~~- 313 (459)
T 4a6r_A 246 ERICRKYDVLLVADEVICGFGRT-----GE---WFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVG-KRVAEGLIAG- 313 (459)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTT-----SS---SSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEEC-HHHHHHHHHH-
T ss_pred HHHHHHcCCEEEEeccccCCCcc-----cc---cchHhhcCCCCCeeehh--hhhcCCCCCccceeeC-HHHHHHhhcC-
Confidence 99999999999999999876431 10 011111 123677765 874444 578877664 4433221100
Q ss_pred cccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHh----hcCCCeEEecCCCeeEEEEe
Q 009181 373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIM-EVSESIQKGI----KEIPELFIIGRPDMTIVAFG 447 (541)
Q Consensus 373 ~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~-~~a~~l~~~L----~~~~~~~v~~~~~~~~v~f~ 447 (541)
..+ ....+..++ ..++.+++..+..-.-++..++.. ++.+++++.| .+.|.+..+ ++...++.+.
T Consensus 314 ~~~----~~~~t~~~~-----~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~ 383 (459)
T 4a6r_A 314 GDF----NHGFTYSGH-----PVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDV-RGVGMVQAFT 383 (459)
T ss_dssp CTT----HHHHHHCSC-----HHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEE
T ss_pred CCc----ccCCCCCCC-----HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEE
Confidence 000 000011111 224444444332111123444444 4445555444 555555544 2344555665
Q ss_pred cCCC-C-----------HHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 448 SDVV-D-----------IFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 448 ~~~~-~-----------~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
+... . ..++.+.|.++|+.+...+ +.+|++++...+ +++++++++|+++++++.+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 384 LVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG--DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp ECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCccccccccchHHHHHHHHHHHHHCCeEEecCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4321 1 5678899999998776654 799999876655 9999999999999987653
No 212
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.83 E-value=9.5e-19 Score=182.17 Aligned_cols=320 Identities=11% Similarity=0.049 Sum_probs=205.2
Q ss_pred HHHHHHHHHhhc--ccCCCCcccchHHHHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHh
Q 009181 145 FSLINEACSMFA--HTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRN 220 (541)
Q Consensus 145 ~~~~~~~~~~~~--~~n~~~~~~~~~~~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~ 220 (541)
.+.+.++.. .. .....+|....|..++.+.+.+|+.+..+.+ +++ +..++|+|+++|+.+++.++.+.
T Consensus 49 ~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~----i~i~~t~G~~~al~~~~~~l~~~--- 120 (405)
T 3k7y_A 49 FDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKK----ICTIQCIGGTGAIFVLLEFLKML--- 120 (405)
T ss_dssp CHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTC----EEEEEEEHHHHHHHHHHHHHHTT---
T ss_pred cHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccc----eEEEEcCchHHHHHHHHHHHHhc---
Confidence 344555544 22 2233456667788888887888875444332 221 22378999999999999887631
Q ss_pred hcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeC-CC-CCccCHHHHHHhhcc--CceEEEeecC-CCCCccccC---H
Q 009181 221 KRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DK-EFRADVKAIKKYINR--NTVLIVGSAP-GFPHGIIDP---I 292 (541)
Q Consensus 221 ~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~-~~-~~~~d~~~Le~~i~~--~t~~vv~~~~-~~~~G~id~---i 292 (541)
.+ ++|++++++|+.+..+++..|++++.+|+ ++ ++.+|+++|++++++ ++++++++.| +||||.+.+ +
T Consensus 121 -~~---d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~ 196 (405)
T 3k7y_A 121 -NV---ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYF 196 (405)
T ss_dssp -TC---CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHH
T ss_pred -CC---CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHH
Confidence 12 78999999999999999999999999998 44 689999999999974 4667777655 899999976 6
Q ss_pred HHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCC-CCCCceEEEE--ecccccccc-
Q 009181 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLY--RNREIRKHQ- 368 (541)
Q Consensus 293 ~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~-~p~g~g~ll~--~~~~~~~~~- 368 (541)
++|+++|++|++++++|++|+.+...-.......+..+. ....-.++..++.|... .+..+|+++. .+++++...
T Consensus 197 ~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~ 275 (405)
T 3k7y_A 197 DEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFE-EKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVF 275 (405)
T ss_dssp HHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHH-TTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHH-hcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHH
Confidence 688999999999999999998765310000000000000 11122456678899843 4566898764 344433211
Q ss_pred --cc--cccccCCCccCCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhh----cCC-
Q 009181 369 --FV--AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIK----EIP- 431 (541)
Q Consensus 369 --~~--~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~----~~~- 431 (541)
.. ....|... ...++.++...+. .+.++++.+++.++++++.+.|+ ++.
T Consensus 276 ~~l~~~~~~~~~~~--------------~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~ 341 (405)
T 3k7y_A 276 NNLCFIVRKFYSSP--------------VIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNL 341 (405)
T ss_dssp HHHHHHHHTTTSSC--------------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred HHHHHHHhcccCCC--------------cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 00 01111110 1223333333332 12345666778889999999998 762
Q ss_pred --CeEEecCCCeeEE-EEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 432 --ELFIIGRPDMTIV-AFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 432 --~~~v~~~~~~~~v-~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
++++. +|..+++ ++..+. +..+.|.++|+.+... . |||++..+.+++++++++|+++++.
T Consensus 342 ~~~~~~~-~p~gg~f~~~~l~~----~~~~~L~~~gV~v~p~----~-Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 342 NYDWNVY-KKQRGLFSFVPLLA----KIAEHLKTHHIYIINN----G-RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp CCCGGGG-SSCCSSEEECGGGG----GGTTTTTTTTEECCTT----S-EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred CCCCccc-cCCceEEEecCCCH----HHHHHHHHCCEeecCC----C-eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 14544 4455544 443332 3345666777766542 2 9999877779999999999998764
No 213
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.82 E-value=1e-18 Score=184.63 Aligned_cols=300 Identities=14% Similarity=0.099 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHhC-CCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhh---cCC---CCCeEEecCCccchHHH-H
Q 009181 171 RFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---RGI---TRPEMIIPVSAHSAYDK-A 242 (541)
Q Consensus 171 ~~e~ev~~~la~l~g-~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~---~Gi---~~~~vi~~~~~h~s~~k-a 242 (541)
+...++.+.++++++ .+.+. + ++|+|||+|+..|+++++.+.... .|. .+++|++.++.|+.... +
T Consensus 101 ~~~~~la~~la~~~~~~~~~~----v--~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~ 174 (449)
T 2cjg_A 101 VAMARFVETFARVLGDPALPH----L--FFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT 174 (449)
T ss_dssp HHHHHHHHHHHHHHCCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG
T ss_pred HHHHHHHHHHHHhcCCCCCCE----E--EEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccch
Confidence 334557778888887 33333 6 999999999999999887544311 010 02789998877654322 2
Q ss_pred HhhcC-------------CeEEEeeCCC--CC--------ccCHHHHHHhhc---cCceEEEeecCCCCCccccC----H
Q 009181 243 AQYFN-------------IKLWRVPVDK--EF--------RADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----I 292 (541)
Q Consensus 243 ~~~~G-------------~~v~~v~~~~--~~--------~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~----i 292 (541)
....| ..+..+|.++ .. ..++++|+++++ +++++|+++..++++|.+.+ +
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 254 (449)
T 2cjg_A 175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFF 254 (449)
T ss_dssp GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHH
T ss_pred hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHH
Confidence 22222 2567777754 11 356777999995 57888888887889997666 9
Q ss_pred HHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccc
Q 009181 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV 372 (541)
Q Consensus 293 ~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~ 372 (541)
++|.++|++||++||+|++|+++... |... .+.......|+++++ |++ .+|+++.++ ++......
T Consensus 255 ~~l~~l~~~~g~lli~DEv~~g~g~~-----g~~~-~~~~~~~~~di~t~s--K~l----~iG~~~~~~-~~~~~l~~-- 319 (449)
T 2cjg_A 255 AAMRELCDEFDALLIFDEVQTGCGLT-----GTAW-AYQQLDVAPDIVAFG--KKT----QVCGVMAGR-RVDEVADN-- 319 (449)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTT-----SSSS-THHHHTCCCSEEEEC--GGG----SSEEEEECG-GGGGSTTC--
T ss_pred HHHHHHHHHCCcEEEEeccccCCCcc-----Ccce-eecccCCCceEEEec--Ccc----cEEEEEECH-HHhhhhhh--
Confidence 99999999999999999999876431 1000 011111234777665 984 378777654 44432100
Q ss_pred cccCCCccCCCcccCCCCCchHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----CCC-eEEecCCCeeEE
Q 009181 373 TEWSGGLYVSPTVAGSRPGGLIAGAW---AALMSLGQEGYLENTKAIMEVSESIQKGIKE----IPE-LFIIGRPDMTIV 444 (541)
Q Consensus 373 ~~~~~~~~~~~~~~gsr~~~~~a~~~---~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~-~~v~~~~~~~~v 444 (541)
.+... ...++..+....++. ++++.+.. ++..++..++++++++.|++ .|. +..+ ++...++
T Consensus 320 -~~~~~-----~~~~~t~~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~~g~~~ 389 (449)
T 2cjg_A 320 -VFAVP-----SRLNSTWGGNLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDP-RGRGLMC 389 (449)
T ss_dssp -TTTST-----TSSCCSSSSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EEETTEE
T ss_pred -cccCC-----cccccCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-eeccEEE
Confidence 00000 001111111222344 44443323 34667778888888888875 354 5443 2345677
Q ss_pred EEecCCC-CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 445 AFGSDVV-DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 445 ~f~~~~~-~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
.+.+.+. +..++.+.|.++|+.+...+ ++.+|++++..++ +++++++++|+++++++
T Consensus 390 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 390 AFSLPTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEECSSHHHHHHHHHHHHHTTEECEEET-TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECChHHHHHHHHHHHHCCeEEecCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7776542 35678899999998776543 4799999886655 99999999999998764
No 214
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.81 E-value=6.8e-19 Score=182.69 Aligned_cols=288 Identities=13% Similarity=0.122 Sum_probs=192.2
Q ss_pred CCcccchHH-----HHHHHHHHHHHHHHhCCC--CCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCC----eE
Q 009181 161 LHLDIFQSV-----ARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP----EM 229 (541)
Q Consensus 161 ~~~~~~~~~-----~~~e~ev~~~la~l~g~~--~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~----~v 229 (541)
.+|....+. .++++.+.+++. ..|.+ +.+ ++ ++|+|+++++.++++++.+ +| + +|
T Consensus 57 ~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~---~i--~~t~G~~~al~~~~~~l~~-----~G---d~~~~~V 122 (391)
T 3bwn_A 57 SYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDR---YI--VVGTGSTQLCQAAVHALSS-----LA---RSQPVSV 122 (391)
T ss_dssp SSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSS---EE--EEEEHHHHHHHHHHHHHHH-----TS---SSSSEEE
T ss_pred hcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCC---eE--EEeCChHHHHHHHHHHhcC-----CC---CCCcceE
Confidence 345445555 667776666665 34543 322 36 8999999999999999864 66 7 99
Q ss_pred EecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEe
Q 009181 230 IIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD 309 (541)
Q Consensus 230 i~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD 309 (541)
+++++.|+++...++..|++++.++++.++ ++ .+++++|++++|+||||.+.+ +|++.++.+++++++|
T Consensus 123 lv~~P~y~~~~~~~~~~g~~~~~~~~d~~~-l~--------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~D 191 (391)
T 3bwn_A 123 VAAAPFYSTYVEETTYVRSGMYKWEGDAWG-FD--------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHD 191 (391)
T ss_dssp EECSSCCTHHHHHHHTTCBTTEEEEEESTT-CC--------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEE
T ss_pred EEcCCCchhHHHHHHHcCCeEEEecCCHHH-cC--------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEe
Confidence 999999999999999999999999886432 11 257899999999999999986 4544222233999999
Q ss_pred CCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccccccccCCCccCCCcccC
Q 009181 310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG 387 (541)
Q Consensus 310 ~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 387 (541)
++|+... .+++.. ..+.+++..+++|. ++++| +|+++..++++.............
T Consensus 192 e~y~~~~----------~~~l~~-~~~~~i~~~S~SK~-~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~---------- 249 (391)
T 3bwn_A 192 FAYYWPH----------YTPITR-RQDHDIMLFTFSKI-TGHAGSRIGWALVKDKEVAKKMVEYIIVNSI---------- 249 (391)
T ss_dssp CTTCSTT----------TSCCCC-CBCCSEEEEEHHHH-HSCGGGCEEEEEECCHHHHHHHHHHHHHHHS----------
T ss_pred CCCCCCC----------CCcccc-CCCCeEEEEechhh-cCCCccceEEEEecCHHHHHHHHHHhccccc----------
Confidence 9996210 112322 34567888899998 66666 598776555544322111110000
Q ss_pred CCCCchHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC-------------ee
Q 009181 388 SRPGGLIAGAWAALMSLG------------QEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD-------------MT 442 (541)
Q Consensus 388 sr~~~~~a~~~~al~~lg------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~-------------~~ 442 (541)
+....+++++...+. ...+++..+++.++++++.+.|+++|++++..+.. ..
T Consensus 250 ---~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~ 326 (391)
T 3bwn_A 250 ---GVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPA 326 (391)
T ss_dssp ---SCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCS
T ss_pred ---CCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcce
Confidence 001224444444442 23577888889999999999999988887654322 22
Q ss_pred EEEEecCCCCHHHHHHHHHhCCceecc---CCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 443 IVAFGSDVVDIFEVNDIMSSKGWHLNP---LQR-PNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 443 ~v~f~~~~~~~~~l~~~l~~~G~~~~~---~~~-~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
++++..++. ..+.+.|.++|+.+.. ++. ++++|+|++. +.+++++++++|++++++
T Consensus 327 ~~~~~~~~~--~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~-~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 327 FAWLGTKEE--TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLS-REDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEEEESSS--CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCS-CHHHHHHHHHHHHSCC--
T ss_pred EEEecCCcH--HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 566766532 3566778889976543 332 5789999985 668899999999887643
No 215
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.81 E-value=6.2e-19 Score=184.15 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=174.6
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEE---cCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecC-CccchHH----------
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNM---TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYD---------- 240 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~---t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~-~~h~s~~---------- 240 (541)
++++.+++++|.+.. ++ +++|++|+..++.++.+ +| |+|++++ +.|....
T Consensus 78 ~Le~~lA~l~g~e~a--------lv~p~~~sGt~A~~~al~all~-----pG---D~Vl~~~~~~y~~~~~~~g~~~~~~ 141 (427)
T 3hvy_A 78 SLDRVYANIFNTESA--------FVRPHFVNGTHAIGAALFGNLR-----PN---DTMMSICGMPYDTLHDIIGMDDSKK 141 (427)
T ss_dssp HHHHHHHHHHTCSEE--------EEETTCCSHHHHHHHHHHHTCC-----TT---CEEEECSSSCCGGGHHHHTCCTTCC
T ss_pred HHHHHHHHHhCCCce--------EEeCCCCcHHHHHHHHHHHhcC-----CC---CEEEEeCCCCchhHHHHhccccchh
Confidence 344588999998753 45 78999999999888643 67 9999998 8887765
Q ss_pred -HHHhhcCCeEEEeeCCCCCccCHHHHHHhhc--cCceEEEeec----CCCCCccccCHHHHHHHHHH--cCCEEEEeCC
Q 009181 241 -KAAQYFNIKLWRVPVDKEFRADVKAIKKYIN--RNTVLIVGSA----PGFPHGIIDPIQELGELALS--HGTCLHVDLC 311 (541)
Q Consensus 241 -ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~--~~t~~vv~~~----~~~~~G~id~i~~I~~la~~--~~i~lhvD~a 311 (541)
..++..|++++.++. +++.+|+++++++++ ++|++|++++ |+||+|.+.|+++|+++|++ +|++++||+|
T Consensus 142 ~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a 220 (427)
T 3hvy_A 142 VGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNC 220 (427)
T ss_dssp SCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred hhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 345667999999998 788999999999999 7899999999 99999999999999999999 8999999999
Q ss_pred cccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCC--CCceEEEEeccccccccccc-ccccCCCccCCCcccCC
Q 009181 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGS 388 (541)
Q Consensus 312 ~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p--~g~g~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs 388 (541)
|+.++.. .+....|+|+++.++||++.++ ...|+++. ++++....... ..... +....++
T Consensus 221 ~~~~~~~-----------~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~-~~~li~~l~~~~~~~~~-g~~~~~~---- 283 (427)
T 3hvy_A 221 YGEFVEE-----------KEPTDVGADIIAGSLIKNIGGGIATTGGYIAG-KEEYVTQATFRVTVPGI-GGECGST---- 283 (427)
T ss_dssp TCTTTSS-----------SCGGGGTCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSCTTT-GGGCCCC----
T ss_pred ccccccC-----------CCCcccCCeEEEECCcccccccccceEEEEEE-CHHHHHHHHHHhhcCCc-ccccCCC----
Confidence 9866521 1112347899999999995442 23476554 45544332111 01000 0000010
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCCee-----EEEEecCCC-CHHHHHHHHHh
Q 009181 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMT-----IVAFGSDVV-DIFEVNDIMSS 462 (541)
Q Consensus 389 r~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~~~-----~v~f~~~~~-~~~~l~~~l~~ 462 (541)
+. .+|++++ |......+.++..+++.++++.|+++ ++++. +.... +++|.+.+. ...++++.|..
T Consensus 284 -~~----~a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~-p~~~~~~~~li~~~~l~~~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 284 -FG----VMRSLYE--GLFMAPHVTIEAVKGAVFCARIMELA-GFDVL-PKYNDKRTDIIQAIKFNDEKKLIDFIKGIQT 354 (427)
T ss_dssp -TT----CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCCSSSEEEEECSSHHHHHHHHHHHHH
T ss_pred -HH----HHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCCceEEEEEeCCCHHHHHHHHHHhcc
Confidence 11 1444543 33445678888999999999999998 66774 32333 778877542 34567777776
Q ss_pred CC
Q 009181 463 KG 464 (541)
Q Consensus 463 ~G 464 (541)
..
T Consensus 355 ~~ 356 (427)
T 3hvy_A 355 AS 356 (427)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 216
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.81 E-value=4e-19 Score=186.36 Aligned_cols=254 Identities=15% Similarity=0.079 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecC-CccchHHHHHh-------
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDKAAQ------- 244 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~-~~h~s~~ka~~------- 244 (541)
..++++++++++|.+... .-+++++||+|+..++.++.. +| ++|+++. +.|.++...+.
T Consensus 67 ~~~l~~~la~~~g~~~~~-----~~i~~~sGt~Ai~~al~al~~-----~G---d~Vl~~~~~~y~~~~~~~~l~g~~~~ 133 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGL-----VRPQIISGTHAISTALFGILR-----PG---DELLYITGKPYDTLEEIVGVRGKGVG 133 (431)
T ss_dssp HHHHHHHHHHHTTCSEEC-----CBTTSCSHHHHHHHHHHTTCC-----TT---CEEEECSSSCCTTHHHHTTSSSCSSS
T ss_pred HHHHHHHHHHHhCCCccc-----ccceeeCHHHHHHHHHHHhCC-----CC---CEEEEeCCCCchhHHHHHhhcccccc
Confidence 455777999999997543 112244779999999987642 66 8999998 89999887664
Q ss_pred ---hcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeec----CCCCCccccCHHHHHHHHHH--cCCEEEEeCCcccc
Q 009181 245 ---YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSA----PGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGF 315 (541)
Q Consensus 245 ---~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~----~~~~~G~id~i~~I~~la~~--~~i~lhvD~a~gg~ 315 (541)
.+|++++.++.++++.+|+++|+++++++|++|++++ |++++|.+.++++|+++|++ +|+++++|++|+.+
T Consensus 134 ~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~ 213 (431)
T 3ht4_A 134 SFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEF 213 (431)
T ss_dssp CSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTT
T ss_pred hHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhh
Confidence 4799999999988999999999999999999999996 55666667889999999999 99999999999877
Q ss_pred hhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCC---CCCceEEEEecccccccccccccccCCCccCCCcccCCCCCc
Q 009181 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLA---PKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (541)
Q Consensus 316 ~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~---p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~ 392 (541)
... .+....|+|+++.++||++.+ |.| |+++. ++++.............+.. .|..+.
T Consensus 214 ~~~-----------~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~-~~~li~~l~~~~~~~~~g~~-----~~~~~~- 274 (431)
T 3ht4_A 214 IEE-----------QEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVG-KEQYVEACAYRLTSPGIGAE-----AGASLY- 274 (431)
T ss_dssp SSS-----------CCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEE-CHHHHHHHHHHHSCTTTTTS-----CSCCCS-
T ss_pred ccC-----------CCccccCCeEEEcCccccCCCCCCCce-EEEEe-cHHHHHHHHHHhccCCcccc-----cCccHH-
Confidence 541 111234789999999999433 566 76555 44443322111111000100 111111
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecCCC----eeEEEEecCCC-CHHHHHHHHHhCC
Q 009181 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD----MTIVAFGSDVV-DIFEVNDIMSSKG 464 (541)
Q Consensus 393 ~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~~~----~~~v~f~~~~~-~~~~l~~~l~~~G 464 (541)
.+|++++ +......+.++..++++++++.|+++ ++++...+. ..++.+.+.+. ...++.+.|.+..
T Consensus 275 ---~~~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 275 ---SLQEMYQ--GFFLAPHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQYAS 345 (431)
T ss_dssp ---CSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHHHTS
T ss_pred ---HHHHHHh--HhhhHHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHHhcC
Confidence 1222332 33445677888899999999999987 566642221 12667776542 4567777777764
No 217
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.80 E-value=2.5e-18 Score=181.92 Aligned_cols=298 Identities=18% Similarity=0.155 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhc-C--
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-N-- 247 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~-G-- 247 (541)
+...++.++++++++.+..+ ++ ++|+|||||+..|+++++.+. | +++|++.+.+|+.....+..+ +
T Consensus 107 ~~~~~la~~l~~~~~~~~~~---~v--~~~~sGseA~~~alk~a~~~~----g--~~~ii~~~~~yhg~~~~~~~~~~~~ 175 (453)
T 4ffc_A 107 EQYVQVAELLNALTPGDHDK---RT--ALFNSGAEAVENAIKVARLAT----G--RPAVVAFDNAYHGRTNLTMALTAKS 175 (453)
T ss_dssp HHHHHHHHHHHHHSSCSSCE---EE--EEESSHHHHHHHHHHHHHHHH----C--CCEEEEETTCCCCSSHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCc---EE--EEeCcHHHHHHHHHHHHHHhc----C--CCEEEEEcCccCCcchHHHhhcCCC
Confidence 45556788999998754322 25 999999999999999987532 2 267888777765433332222 1
Q ss_pred -----------CeEEEeeCCCCC------------ccCHHHHHHhhccCceEEEeecCCCCC-ccccC----HHHHHHHH
Q 009181 248 -----------IKLWRVPVDKEF------------RADVKAIKKYINRNTVLIVGSAPGFPH-GIIDP----IQELGELA 299 (541)
Q Consensus 248 -----------~~v~~v~~~~~~------------~~d~~~Le~~i~~~t~~vv~~~~~~~~-G~id~----i~~I~~la 299 (541)
..+..+|+...+ ..+.++|++++.+++.++++..|.+++ |.+.+ +++|.++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~ 255 (453)
T 4ffc_A 176 MPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWA 255 (453)
T ss_dssp TTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred cccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHH
Confidence 156677765211 122577777776555555555555555 55654 99999999
Q ss_pred HHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCC--CceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCC
Q 009181 300 LSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG 377 (541)
Q Consensus 300 ~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~--gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~ 377 (541)
++||++||+|++|.+|... |. .+.+... ..|.++++ |.+.++..+|+++.++ ++......
T Consensus 256 ~~~~~llI~DEv~~g~g~~-----g~---~~a~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~-~i~~~~~~------- 317 (453)
T 4ffc_A 256 SENGVVFIADEVQTGFART-----GA---WFASEHEGIVPDIVTMA--KGIAGGMPLSAVTGRA-ELMDAVYA------- 317 (453)
T ss_dssp HHHTCEEEEECTTTTTTTT-----SS---SSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEH-HHHTTSCT-------
T ss_pred HHcCCEEEEecCccCCCcc-----cc---cchhhhcCCCcchHhhh--hhhcCCcCeEEEEECH-HHHhhhcc-------
Confidence 9999999999999876431 10 0111111 23666665 8865556789876654 33322110
Q ss_pred CccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEecCCCeeEEEEecCC---
Q 009181 378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIK----EIPELFIIGRPDMTIVAFGSDV--- 450 (541)
Q Consensus 378 ~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~----~~~~~~v~~~~~~~~v~f~~~~--- 450 (541)
...++..+....++.+++..+....-++..++..++.+++++.|+ +.|.+..+ ++...++++.+.+
T Consensus 318 ------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~ 390 (453)
T 4ffc_A 318 ------GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV-RGRGAMLAIEIVKPGT 390 (453)
T ss_dssp ------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE-EEETTEEEEEEBCTTS
T ss_pred ------cCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EeeceEEEEEEecCcc
Confidence 001111112233454444444321113445555555555555554 45655443 2334566665432
Q ss_pred --C---CHHHHHHHHHhCCceeccCC-CCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 451 --V---DIFEVNDIMSSKGWHLNPLQ-RPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 451 --~---~~~~l~~~l~~~G~~~~~~~-~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
. ...++.+.|.++|+.+...+ .++.+|++++..++ +++++++++|+++++++.+
T Consensus 391 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 391 LEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp CCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 35678899999998775433 34789999887655 9999999999999987653
No 218
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.80 E-value=2.7e-18 Score=185.52 Aligned_cols=319 Identities=11% Similarity=0.076 Sum_probs=200.0
Q ss_pred cccchHHHHHHHHH-HHHHHHHhCC-----CCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCcc
Q 009181 163 LDIFQSVARFEAEV-IAMTAALLGN-----KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH 236 (541)
Q Consensus 163 ~~~~~~~~~~e~ev-~~~la~l~g~-----~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h 236 (541)
|...++...+.+++ ..++.+.++. ++++ + ++|+|+++++.+++.++..+..-.+| ++|+++.+.|
T Consensus 134 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~----I--~~t~G~~eal~~~~~~l~~~~l~~~G---d~Vlv~~P~y 204 (546)
T 2zy4_A 134 YPVPPRMLNISEKIVRQYIIREMGADAIPSESVN----L--FAVEGGTAAMAYIFESLKLNGLLKAG---DKVAIGMPVF 204 (546)
T ss_dssp CCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEE----E--EEEEHHHHHHHHHHHHHHHTTSSCTT---CEEEEEESCC
T ss_pred CCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcce----E--EEECCHHHHHHHHHHHhhhhhcCCCC---CEEEEeCCCC
Confidence 33333444455443 3455555443 1233 6 89999999999999885311111256 8999999999
Q ss_pred chHHHHHhhc--CCeEEEeeCCC--CCccCHHHHHHhhccCceEEEeecCCCCCccccC---HHHHHHHH--HHcCCEEE
Q 009181 237 SAYDKAAQYF--NIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELA--LSHGTCLH 307 (541)
Q Consensus 237 ~s~~ka~~~~--G~~v~~v~~~~--~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~---i~~I~~la--~~~~i~lh 307 (541)
+.+..++... |++++.+|+++ ++.+|+++|++++++++++|++++|+||||.+.+ +++|.++| +++|++++
T Consensus 205 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii 284 (546)
T 2zy4_A 205 TPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMIL 284 (546)
T ss_dssp HHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEE
T ss_pred ccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEE
Confidence 9999887654 68899999875 5679999999999888999999999999999977 56788888 78999999
Q ss_pred EeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEecccccccccc------------ccc
Q 009181 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFV------------AVT 373 (541)
Q Consensus 308 vD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~~~~~~------------~~~ 373 (541)
+|++|+.+... . .+... ...+.+++..+++|. ++..| +|+++..++++...... ...
T Consensus 285 ~De~y~~~~~~-----~--~s~~~-~~~~~~i~~~S~SK~-~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~ 355 (546)
T 2zy4_A 285 TDDVYGTFADD-----F--QSLFA-ICPENTLLVYSFSKY-FGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYR 355 (546)
T ss_dssp EECTTGGGSTT-----C--CCHHH-HCGGGEEEEEESTTT-TTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHT
T ss_pred EeCcchhhccc-----C--cCHHH-hCCCCEEEEEeCccc-cCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhh
Confidence 99999876531 0 11111 113457888899998 44444 89887766533322100 000
Q ss_pred ccCCCccC------------C-CcccCCCCCchHHHHHH----HH-HHH--hHHHHHHHHHHHHHHHHHHHHHhhcCCCe
Q 009181 374 EWSGGLYV------------S-PTVAGSRPGGLIAGAWA----AL-MSL--GQEGYLENTKAIMEVSESIQKGIKEIPEL 433 (541)
Q Consensus 374 ~~~~~~~~------------~-~~~~gsr~~~~~a~~~~----al-~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 433 (541)
.|...... . ....+. +.....+.+ ++ ..+ +....++..+.+.++.+.+.+.|. . ++
T Consensus 356 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~ 431 (546)
T 2zy4_A 356 SLLPDVRSLKFIDRLVADSRAVALNHTA--GLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M-PP 431 (546)
T ss_dssp TTCSCGGGCCHHHHHHHHTTTTTTGGGC--SSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SC
T ss_pred hccccccchhhhhhhhhhhHHHHhhccC--CCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C-Cc
Confidence 01000000 0 000000 111112221 11 222 234456666777777888888885 4 33
Q ss_pred EEecCCCee-EEEEecCC-----------------C-CHHHHHHHHHhCCceecc---CC-CCCeEEEEecCCCHHHHHH
Q 009181 434 FIIGRPDMT-IVAFGSDV-----------------V-DIFEVNDIMSSKGWHLNP---LQ-RPNSIHICVTLQHVAVVDV 490 (541)
Q Consensus 434 ~v~~~~~~~-~v~f~~~~-----------------~-~~~~l~~~l~~~G~~~~~---~~-~~~~iRi~~~~~~~e~id~ 490 (541)
.+ .++..+ ++++++.. . +...+.+.+.++|+.+.. ++ .++++|+|++..+.+++++
T Consensus 432 ~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~ 510 (546)
T 2zy4_A 432 LR-DENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAA 510 (546)
T ss_dssp CC-CTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHH
T ss_pred cc-CCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHH
Confidence 32 234444 44665431 1 223466777888976543 22 2368999998666799999
Q ss_pred HHHHHHHHHHHHHc
Q 009181 491 FLRDLRESVETVKQ 504 (541)
Q Consensus 491 ~i~~L~~~~~~l~~ 504 (541)
++++|+++++++.+
T Consensus 511 ~~~~l~~~l~~~~~ 524 (546)
T 2zy4_A 511 IGRALRKMADELYA 524 (546)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987764
No 219
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.79 E-value=2.5e-18 Score=180.57 Aligned_cols=299 Identities=14% Similarity=0.056 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHHhhc---
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYF--- 246 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~~~~--- 246 (541)
....++.+.++++++.+.++ + ++|+||++|+..++++++.. +| +++|++.++.++. ...+....
T Consensus 85 ~~~~~l~~~la~~~~~~~~~----v--~~~~gg~ea~~~a~~~~~~~----~~--~~~vi~~~~~yhg~~~~~~~~~~~~ 152 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLDR----A--LLLSTGAESNEAAIRMAKLV----TG--KYEIVGFAQSWHGMTGAAASATYSA 152 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCCE----E--EEESCHHHHHHHHHHHHHHH----HT--CCEEEEETTCCCCSSHHHHHTCCSS
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEeCchHHHHHHHHHHHHHh----hC--CCeEEEECCCcCCCChhHHhhcCCc
Confidence 34456777899999876554 6 89999999999999987642 11 2678888776544 33333221
Q ss_pred --------CCeEEEeeCCCC------------CccCHHHHHHhhc----cCceEEEeecCCCCCccccC----HHHHHHH
Q 009181 247 --------NIKLWRVPVDKE------------FRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGEL 298 (541)
Q Consensus 247 --------G~~v~~v~~~~~------------~~~d~~~Le~~i~----~~t~~vv~~~~~~~~G~id~----i~~I~~l 298 (541)
...++.++++.. +.+|+++|+++++ +++++|+++..++++|.+.+ +++|.++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l 232 (433)
T 1zod_A 153 GRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRK 232 (433)
T ss_dssp CCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHH
T ss_pred cccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHH
Confidence 124555554321 1257999999997 45667776655688997655 9999999
Q ss_pred HHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCC
Q 009181 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG 378 (541)
Q Consensus 299 a~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~ 378 (541)
|++||+++|+|++|+++... |. .-.++......|+++++ |.+.++.++|+++.++ ++...... .....+
T Consensus 233 ~~~~~~~li~DEv~~~~g~~-----g~-~~~~~~~~~~~di~s~s--K~~~~G~~ig~~~~~~-~~~~~~~~-~~~~~~- 301 (433)
T 1zod_A 233 CEARGMLLILDEAQTGVGRT-----GT-MFACQRDGVTPDILTLS--KTLGAGLPLAAIVTSA-AIEERAHE-LGYLFY- 301 (433)
T ss_dssp HHHHTCEEEEECTTTTTTTT-----SS-SSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEECH-HHHHHHHH-TTCCCC-
T ss_pred HHHhCCEEEEeccccCCCcC-----ch-HhHHhhcCCCCCEEEec--ccccCCCCeeEEEEhH-HHHHhhcc-CCCCCC-
Confidence 99999999999999876421 10 00011111224666554 8755556789877754 44322111 000000
Q ss_pred ccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEecCC----
Q 009181 379 LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGSDV---- 450 (541)
Q Consensus 379 ~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~~~---- 450 (541)
.+..+. ....++..++++.+.. .+..++..++++++++.|++ .+.+..+ ++...++++.+.+
T Consensus 302 ----~t~~~~--~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~ 371 (433)
T 1zod_A 302 ----TTHVSD--PLPAAVGLRVLDVVQR---DGLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEIVKDRRT 371 (433)
T ss_dssp ----CTTTTC--HHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTT
T ss_pred ----CCCCcC--HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccc
Confidence 011111 0112233344443333 24566677777788777765 3554433 2344556665432
Q ss_pred -----CCHHHHHHHHHhCCceeccCC-C--CCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 451 -----VDIFEVNDIMSSKGWHLNPLQ-R--PNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 451 -----~~~~~l~~~l~~~G~~~~~~~-~--~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
.+..++.+.|.++|+.+...+ . ++++|++++..++ +++++++++|+++++++
T Consensus 372 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 372 KEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp TEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 236678899999998765432 2 3789998876554 99999999999998764
No 220
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.79 E-value=1.1e-17 Score=176.88 Aligned_cols=294 Identities=17% Similarity=0.102 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhc----
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF---- 246 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~---- 246 (541)
+...++.++++++++.+..+ ++ ++|+|||+|+..|+++++.+. | +++|++.+.+|+.....+..+
T Consensus 104 ~~~~~la~~l~~~~~~~~~~---~v--~~~~sGseA~~~Alk~a~~~~----g--~~~ii~~~~~yhG~~~~~~~~~~~~ 172 (451)
T 3oks_A 104 EGYVAVCEQLNRLTPVRGDK---RS--ALFNSGSEAVENAVKIARSHT----H--KPAVVAFDHAYHGRTNLTMALTAKV 172 (451)
T ss_dssp HHHHHHHHHHHHHSSCCSSE---EE--EEESSHHHHHHHHHHHHHHHH----C--CCEEEEETTCCCCSSHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhCCcCCCC---EE--EEeCcHHHHHHHHHHHHHHhc----C--CCeEEEEcCCcCCccHHHHHhcCCC
Confidence 45566888999998754322 25 999999999999999987532 2 267888777765433332222
Q ss_pred ----------CCeEEEeeCCCCCc-------------cCHHHHHHhhc----c-CceEEEeecCCCCCccccC----HHH
Q 009181 247 ----------NIKLWRVPVDKEFR-------------ADVKAIKKYIN----R-NTVLIVGSAPGFPHGIIDP----IQE 294 (541)
Q Consensus 247 ----------G~~v~~v~~~~~~~-------------~d~~~Le~~i~----~-~t~~vv~~~~~~~~G~id~----i~~ 294 (541)
...+..+|....++ -+++.+++++. + ++.+|+++..+++.|.+.+ +++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~ 252 (451)
T 3oks_A 173 MPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPT 252 (451)
T ss_dssp TTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHH
T ss_pred cccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHH
Confidence 12567777652111 13444444443 3 4555555555555566655 999
Q ss_pred HHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC--ceEEEeCCCCCCCCCCCceEEEEecccccccccccc
Q 009181 295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV 372 (541)
Q Consensus 295 I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g--vdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~ 372 (541)
|.++|++||++|++|++|.++... |. .+.+...+ .|+++++ |.+.++..+|+++.++ ++......
T Consensus 253 l~~l~~~~g~~lI~DEv~~g~g~~-----g~---~~~~~~~~~~pdi~t~s--K~l~~G~~iG~v~~~~-~~~~~~~~-- 319 (451)
T 3oks_A 253 LLDWCRKNDVVFIADEVQTGFART-----GA---MFACEHEGIDPDLIVTA--KGIAGGLPLSAVTGRA-EIMDSPHV-- 319 (451)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTT-----SS---SSGGGGGTCCCSEEEEC--GGGGTTSSCEEEEEEH-HHHTCSCT--
T ss_pred HHHHHHHcCCEEEEEecccCCCcc-----cc---chhhhhcCCCCCeeeeh--hhhhCCcceEEEEECH-HHHhhhcC--
Confidence 999999999999999999876431 11 11111222 3677665 8866666789876654 33322110
Q ss_pred cccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEec
Q 009181 373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGS 448 (541)
Q Consensus 373 ~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~ 448 (541)
...++..+....++.+++..+..-.-.+..++..++.+++++.|++ .|.+..+ ++...++++.+
T Consensus 320 -----------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~ 387 (451)
T 3oks_A 320 -----------SGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV-RGRGAMIAMEL 387 (451)
T ss_dssp -----------TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEE
T ss_pred -----------CCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EEeeEEEEEEE
Confidence 0011111222335555544443211124455555566666665544 4555443 23345666655
Q ss_pred CC-----C---CHHHHHHHHHhCCceeccCC-CCCeEEEEecCCCH-HHHHHHHHHHHHHHH
Q 009181 449 DV-----V---DIFEVNDIMSSKGWHLNPLQ-RPNSIHICVTLQHV-AVVDVFLRDLRESVE 500 (541)
Q Consensus 449 ~~-----~---~~~~l~~~l~~~G~~~~~~~-~~~~iRi~~~~~~~-e~id~~i~~L~~~~~ 500 (541)
.+ . +..++.+.|.++|+.+...+ .++.+|++++..++ +++++++++|+++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 388 VKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp BSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 22 1 35678899999998765433 34789999887655 999999999999875
No 221
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.78 E-value=7.5e-18 Score=177.10 Aligned_cols=292 Identities=13% Similarity=0.122 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhh-cCC--
Q 009181 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY-FNI-- 248 (541)
Q Consensus 172 ~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~-~G~-- 248 (541)
...++.+.+++.++ +.+. + ++|+|||+|+..|+++++... ++ ++|++.+++|+.....+.. .|.
T Consensus 96 ~~~~l~~~la~~~~-~~~~----v--~~~~sGsea~~~ai~~a~~~~---~~---~~vi~~~~~yhg~~~~~~~~~g~~~ 162 (434)
T 3l44_A 96 LEVKFAKMLKEAMP-ALDK----V--RFVNSGTEAVMTTIRVARAYT---GR---TKIMKFAGCYHGHSDLVLVAAGSGP 162 (434)
T ss_dssp HHHHHHHHHHHHCT-TCSE----E--EEESSHHHHHHHHHHHHHHHH---CC---CEEEEETTCCCCSSGGGGBC-----
T ss_pred HHHHHHHHHHHhCC-CCCE----E--EEeCchHHHHHHHHHHHHHhh---CC---CEEEEEcCccCCCcHHHHhhcCCcc
Confidence 34456668888886 3343 5 899999999999999987531 22 6888887776554333222 222
Q ss_pred -----------------eEEEeeCCCCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC----HHHHHHHHHHcCC
Q 009181 249 -----------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGT 304 (541)
Q Consensus 249 -----------------~v~~v~~~~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i 304 (541)
.+..+|.+ |+++|+++++ +++.+|+++.+++++|.+.+ +++|.++|++||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~i 237 (434)
T 3l44_A 163 STLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGA 237 (434)
T ss_dssp --CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTC
T ss_pred cccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 23333332 8999999997 46778888888778888887 9999999999999
Q ss_pred EEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCc
Q 009181 305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384 (541)
Q Consensus 305 ~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (541)
+||+|++|.+| .. ...+ .++......|.++++ |.+.++.++|+++. ++++........ +.
T Consensus 238 llI~DEv~~g~-~~--g~~~----~~~~~~~~~di~t~s--K~~~~G~~iG~~~~-~~~i~~~~~~~~----------~~ 297 (434)
T 3l44_A 238 LVIYDEVITAF-RF--MYGG----AQDLLGVTPDLTALG--KVIGGGLPIGAYGG-KKEIMEQVAPLG----------PA 297 (434)
T ss_dssp EEEEECTTTTT-TS--SSSC----HHHHHTCCCSEEEEE--GGGGTTSSCEEEEE-CHHHHTTBTTTS----------SB
T ss_pred EEEEeccccce-ec--cccH----HHHHcCCCCCeeehh--hhhcCCcCeeeEEE-cHHHHHhhccCC----------Cc
Confidence 99999999876 31 0000 001111123566554 87666778998755 444433221100 01
Q ss_pred ccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----CCCeEEecCCCeeEEEEecCCC---------
Q 009181 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE----IPELFIIGRPDMTIVAFGSDVV--------- 451 (541)
Q Consensus 385 ~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~v~~~~~~~~v~f~~~~~--------- 451 (541)
..++.......++.+++..+....-++..++..++.+++++.|++ .+....+ ++...++.+.+.+.
T Consensus 298 ~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 376 (434)
T 3l44_A 298 YQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALTVYFTTNTIEDYDAAQ 376 (434)
T ss_dssp CCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEEEEESSSCCCSHHHHH
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEEEEEecCcccchhhcc
Confidence 111111222234444433332111145566666666777776665 3332222 23445666654221
Q ss_pred -----CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 452 -----DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 452 -----~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
...++.+.|.++|+.+...+. +.+|+++. .+.+++++++++|+++++++++
T Consensus 377 ~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~rl~~~-~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 377 DTDGEMFGKFFKLMLQEGVNLAPSKY-EAWFLTTE-HTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp HSCHHHHHHHHHHHHHTTEECCSSTT-CCEECCTT-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCeEEeecCC-CcEEEecc-cCHHHHHHHHHHHHHHHHHHHh
Confidence 125688899999987765443 46788543 3459999999999999988765
No 222
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.78 E-value=1.7e-17 Score=174.00 Aligned_cols=290 Identities=17% Similarity=0.121 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHH-HHHhhcCC-
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYFNI- 248 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~-ka~~~~G~- 248 (541)
....++.+++++.++ +.+. + ++|+||++|+..|+++++... | +++|++.++.|+... .+....|.
T Consensus 92 ~~~~~la~~l~~~~~-~~~~----v--~~~~ggsea~~~al~~a~~~~----~--~~~vi~~~~~yhg~~~~~~~~~~~~ 158 (427)
T 3fq8_A 92 ALENVLAEMVNDAVP-SIEM----V--RFVNSGTEACMAVLRIMRAYT----G--RDKIIKFEGCYHGHADMFLVKAGSG 158 (427)
T ss_dssp HHHHHHHHHHHHHST-TCSE----E--EEESSHHHHHHHHHHHHHHHH----C--CCEEEEEETCCCCSCGGGCSSCCTH
T ss_pred HHHHHHHHHHHHhCC-CCCE----E--EEeCCHHHHHHHHHHHHHHhh----C--CCEEEEECCCcCCCCHHHHHhcCCc
Confidence 455667789999987 4443 5 999999999999999887532 1 257777666654422 22111111
Q ss_pred ------------------eEEEeeCCCCCccCHHHHHHhhcc---CceEEEeecCCCCCccccC----HHHHHHHHHHcC
Q 009181 249 ------------------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHG 303 (541)
Q Consensus 249 ------------------~v~~v~~~~~~~~d~~~Le~~i~~---~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~ 303 (541)
.+..+|.+ |+++|++++++ ++++|+++.+++++|.+.+ +++|.++|++||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 233 (427)
T 3fq8_A 159 VATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD 233 (427)
T ss_dssp HHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred ccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 24444443 89999999986 6888999988888999988 999999999999
Q ss_pred CEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCC
Q 009181 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP 383 (541)
Q Consensus 304 i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (541)
++|++|++|++| .. ...+ ..+......|.++++ |.+.++..+|+++. ++++........ .
T Consensus 234 ~~li~DEv~~g~-~~--g~~~----~~~~~~~~~di~t~s--K~~~~G~~~G~~~~-~~~~~~~~~~~~----------~ 293 (427)
T 3fq8_A 234 ALLVFDEVITGF-RI--AYGG----VQEKFGVTPDLTTLG--KIIGGGLPVGAYGG-KREIMQLVAPAG----------P 293 (427)
T ss_dssp CEEEEECTTTBT-TT--BTTH----HHHHTTCCCSEEEEC--GGGGTTSSCEEEEE-CHHHHTTBTTTS----------S
T ss_pred CEEEEecccccc-cc--Ccch----hhHhcCCCCChhhhh--hhhhCCcceEEEEE-cHHHHHhhccCC----------C
Confidence 999999999877 31 0000 000111123666665 88555556898655 444443221100 0
Q ss_pred cccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEecCCCeeEEEEecCCC--C------
Q 009181 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI---PELFIIGRPDMTIVAFGSDVV--D------ 452 (541)
Q Consensus 384 ~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~f~~~~~--~------ 452 (541)
...++.......++.+++..+..-.-++..++..++.+++++.|+++ .++....+....++++.+.+. .
T Consensus 294 ~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 373 (427)
T 3fq8_A 294 MYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAK 373 (427)
T ss_dssp BCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHT
T ss_pred ccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccc
Confidence 11111111122344444433321111345566666666666666542 022111122345666665431 1
Q ss_pred ------HHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 453 ------IFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 453 ------~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
..++.+.|.++|+.+...+. . |++++..++ +++++++++|++++++
T Consensus 374 ~~~~~~~~~l~~~l~~~Gi~v~~~~~-~--r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 374 KSDLQKFSRFHRGMLEQGIYLAPSQF-E--AGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp TSCHHHHHHHHHHHHHTTEECCSSTT-S--CEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCcEEecCCC-C--CEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 35788899999987765543 2 454544444 9999999999998865
No 223
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.77 E-value=3.1e-18 Score=179.79 Aligned_cols=302 Identities=11% Similarity=0.091 Sum_probs=201.4
Q ss_pred HHHHHHHHHhhcc-cC--CCCcccch-H---HHHHHHHHHHHHHHHhC--CCCCCCCCccceEEcCcHHHHHHHHHHHH-
Q 009181 145 FSLINEACSMFAH-TN--PLHLDIFQ-S---VARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSS- 214 (541)
Q Consensus 145 ~~~~~~~~~~~~~-~n--~~~~~~~~-~---~~~~e~ev~~~la~l~g--~~~~~~~~~v~G~~t~Ggt~a~~~al~a~- 214 (541)
+..+.+++...+. .+ .+.|.... + ..++++.+.+++.+..+ .++++ + ++|+|+++++.+++.++
T Consensus 71 ~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~----i--v~t~G~~~al~~~~~~l~ 144 (427)
T 2hox_A 71 EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRY----I--VFGVGVTQLIHGLVISLS 144 (427)
T ss_dssp HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCE----E--EEESHHHHHHHHHHHHHS
T ss_pred CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCE----E--EEeCCHHHHHHHHHHHHh
Confidence 3445555554442 21 11243334 5 56777777777766443 34443 6 99999999999999988
Q ss_pred -------HHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCc
Q 009181 215 -------RDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG 287 (541)
Q Consensus 215 -------r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G 287 (541)
.+ +| ++|+++.+.|+.+...++..|++++. +.+|+++|++++++++++|++++|+||||
T Consensus 145 ~~~~~~~~~-----~G---d~Vlv~~P~y~~~~~~~~~~g~~~~~------~~~d~~~l~~~~~~~~k~v~l~~p~NPtG 210 (427)
T 2hox_A 145 PNMTATPDA-----PE---SKVVAHAPFYPVFREQTKYFDKKGYV------WAGNAANYVNVSNPEQYIEMVTSPNNPEG 210 (427)
T ss_dssp CCTTTCTTS-----CC---EEEEECSSCCHHHHHHHHHSCBTTEE------EEEEGGGGTTCSCGGGEEEEEESSCTTTC
T ss_pred hccccccCC-----CC---CEEEEeCCCcccHHHHHHHcCCeeee------ecCCHHHHHHhhcCCceEEEEcCCCCCcc
Confidence 32 56 89999999999999999999998763 45788999999988899999999999999
Q ss_pred cccCHHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCC--ceEEEEeccccc
Q 009181 288 IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIR 365 (541)
Q Consensus 288 ~id~i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g--~g~ll~~~~~~~ 365 (541)
.+.+ + +++ ++..+.|+++-. ++ .+..... .+.+++..+++|. +++.| +|+++.+++++.
T Consensus 211 ~~~~-~----~l~--~~~~i~d~~~~~---~~-------~s~~~~~-~~~~i~~~S~SK~-~g~~G~RiG~~~~~~~~l~ 271 (427)
T 2hox_A 211 LLRH-A----VIK--GCKSIYDMVYYW---PH-------YTPIKYK-ADEDILLFTMSKF-TGHSGSRFGWALIKDESVY 271 (427)
T ss_dssp CCCC-C----SST--TCEEEEECTTCS---TT-------TSCCCSC-BCCSEEEEEHHHH-TSCGGGCCEEEEECCHHHH
T ss_pred cccH-H----HHc--CCCEEEeecccC---CC-------CCccccC-CCceEEEEeChhc-CCCCCceEEEEEECCHHHH
Confidence 9988 4 222 667888887632 10 1111221 4568999999998 56555 898877666554
Q ss_pred ccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 009181 366 KHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-------------EGYLENTKAIMEVSESIQKGIKEIPE 432 (541)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~-------------~g~~~~~~~~~~~a~~l~~~L~~~~~ 432 (541)
.........+.. +....+++++...+.. +.+++..+++.++++++.+.|++.++
T Consensus 272 ~~l~~~~~~~~~-------------~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 338 (427)
T 2hox_A 272 NNLLNYMTKNTE-------------GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR 338 (427)
T ss_dssp HHHHHHHHHHTS-------------SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhcCC-------------CCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 432211111100 1112345554444432 12445667888889999999999888
Q ss_pred eEE--ec------------CCCeeEEEEecCCCCHHHHHHHHH-hCCceecc---CC-CCCeEEEEecCCCHHHHHHHHH
Q 009181 433 LFI--IG------------RPDMTIVAFGSDVVDIFEVNDIMS-SKGWHLNP---LQ-RPNSIHICVTLQHVAVVDVFLR 493 (541)
Q Consensus 433 ~~v--~~------------~~~~~~v~f~~~~~~~~~l~~~l~-~~G~~~~~---~~-~~~~iRi~~~~~~~e~id~~i~ 493 (541)
+++ +. +....+++++.+. +..++.+.|. ++|+.+.. ++ .++++|+|++. +.++++++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~-~~e~l~~~l~ 416 (427)
T 2hox_A 339 FSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-TQDDFDQLMY 416 (427)
T ss_dssp EECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-CHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC-CHHHHHHHHH
Confidence 876 22 1124556667654 3445666664 78876542 33 25799999996 5688999999
Q ss_pred HHHHHHH
Q 009181 494 DLRESVE 500 (541)
Q Consensus 494 ~L~~~~~ 500 (541)
+|+++++
T Consensus 417 ~l~~~~~ 423 (427)
T 2hox_A 417 YLKDMVK 423 (427)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988763
No 224
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.77 E-value=3.8e-17 Score=173.69 Aligned_cols=296 Identities=14% Similarity=0.080 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHH---hh-----------------cCCCCCeE
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---NK-----------------RGITRPEM 229 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~---~~-----------------~Gi~~~~v 229 (541)
.++++++.+.++++++.+.+. + ++++||+||+..|+++++.+.. ++ +|-.+++|
T Consensus 109 ~~l~~~la~~l~~~~~~~~~~----v--~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~i 182 (472)
T 1ohv_A 109 ENFVEKLRESLLSVAPKGMSQ----L--ITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSI 182 (472)
T ss_dssp TTHHHHHHHTGGGGCCTTCCE----E--EEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEE
T ss_pred HHHHHHHHHHHHHhCCCCcCE----E--EEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeE
Confidence 456665666666666444333 5 8999999999999999986532 10 12114788
Q ss_pred EecCCccch-HHHHHhhcCCe-----------EEEeeCCC-CC-------------ccCHHHHHHhhcc------CceEE
Q 009181 230 IIPVSAHSA-YDKAAQYFNIK-----------LWRVPVDK-EF-------------RADVKAIKKYINR------NTVLI 277 (541)
Q Consensus 230 i~~~~~h~s-~~ka~~~~G~~-----------v~~v~~~~-~~-------------~~d~~~Le~~i~~------~t~~v 277 (541)
++.+..|.. ...+....|.. +..+++.. .+ ..|+++|+++|++ ++++|
T Consensus 183 i~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 262 (472)
T 1ohv_A 183 LSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGI 262 (472)
T ss_dssp EEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 888766544 44444443321 12223321 01 2378999999986 78999
Q ss_pred EeecCCCCCccccC----HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC----ceEEEeCCCCCCC
Q 009181 278 VGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG----VTSISVDVHKYGL 349 (541)
Q Consensus 278 v~~~~~~~~G~id~----i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g----vdsis~~~hK~~~ 349 (541)
++...++++|.+.| +++|.++|++||++||+|++|.|+.. .|. .+.+...| +|+++++ |..
T Consensus 263 ive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~-----~g~---~~~~~~~gv~~~~Di~t~s--K~~- 331 (472)
T 1ohv_A 263 IVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGS-----TGK---FWAHEHWGLDDPADVMTFS--KKM- 331 (472)
T ss_dssp EECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTT-----TSS---SSGGGGGCCSSCCSEEEEC--GGG-
T ss_pred EEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCC-----CCC---chhccccCCCCCCCEEEEc--ccc-
Confidence 99888888998877 99999999999999999999986432 111 12222223 6777766 872
Q ss_pred CCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009181 350 APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKE 429 (541)
Q Consensus 350 ~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 429 (541)
.+.|+++ ++++.. ....+.++ +..+. ....++..++++.+.. .+..++..++++++++.|++
T Consensus 332 --l~GG~~~--~~~~~~----~~~~~~~~-----T~~~~--~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 393 (472)
T 1ohv_A 332 --MTGGFFH--KEEFRP----NAPYRIFN-----TWLGD--PSKNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLD 393 (472)
T ss_dssp --SSEEEEE--CGGGSC----SSSSSSCC-----SSSSC--HHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCccC--chhhcc----cccccccC-----ccCcc--HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHH
Confidence 1125443 333311 00000011 11111 0112233344444433 34567777888888888876
Q ss_pred C----CC-eEEecCCCeeEEEEecCCC-CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 430 I----PE-LFIIGRPDMTIVAFGSDVV-DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 430 ~----~~-~~v~~~~~~~~v~f~~~~~-~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
+ |+ +..+ .+...++.|...+. +..++.+.|.++|+.+...+ .+.+|++++..++ +++++++++|+++++++
T Consensus 394 l~~~~~~~v~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g-~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 394 LQARYPQFISRV-RGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG-DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHCTTTCEEE-EEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHhhCCCcEEee-cCCceEEEEEeCChhHHHHHHHHHHHCCeEEecCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4 43 4323 23355667765431 35678899999998766533 4689999987766 99999999999988654
No 225
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.77 E-value=1.3e-17 Score=175.36 Aligned_cols=287 Identities=16% Similarity=0.150 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH-h-----
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-Q----- 244 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~-~----- 244 (541)
....++.++++++++ +.+. + ++|+|||+|+..|++++|... ++ ++|++.++.|+.....+ .
T Consensus 96 ~~~~~l~~~la~~~~-~~~~----v--~~~~sgseA~~~al~~ar~~~---~~---~~vi~~~~~yhg~~~~~~~~~~~~ 162 (434)
T 2epj_A 96 EAEVLLAEKILGYVK-RGGM----I--RFVNSGTEATMTAIRLARGYT---GR---DLILKFDGCYHGSHDAVLVAAGSA 162 (434)
T ss_dssp HHHHHHHHHHHHHHC-TTCE----E--EEESSHHHHHHHHHHHHHHHH---CC---CEEEEEETCCCCSSGGGSEECC--
T ss_pred HHHHHHHHHHHHhCC-CCCE----E--EEeCCHHHHHHHHHHHHHHhh---CC---CeEEEEcCCcCCCCHHHHHhcCCC
Confidence 445567778888885 3333 5 899999999999999976432 22 67877776655432211 1
Q ss_pred --------hcCC------eEEEeeCCCCCccCHHHHHHhhcc---CceEEEeecCCCCCccccC----HHHHHHHHHHcC
Q 009181 245 --------YFNI------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHG 303 (541)
Q Consensus 245 --------~~G~------~v~~v~~~~~~~~d~~~Le~~i~~---~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~ 303 (541)
..|+ ++..+|.+ |+++|++++++ ++++|+++..++++|.+.| +++|.++|++||
T Consensus 163 ~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 237 (434)
T 2epj_A 163 AAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESG 237 (434)
T ss_dssp ----CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHT
T ss_pred ccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcC
Confidence 1233 35556643 89999999974 6778877777778999887 999999999999
Q ss_pred CEEEEeCCcccchh--hhh-hhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCcc
Q 009181 304 TCLHVDLCLGGFVL--PFA-KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY 380 (541)
Q Consensus 304 i~lhvD~a~gg~~~--~f~-~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~ 380 (541)
++|++|++|+++.. .+. +..+ ...|++++ +|.+.++..+|+++.++ ++....... +
T Consensus 238 ~~lI~DEv~~g~~~g~~~~~~~~~----------~~~di~s~--sK~l~~G~~~G~v~~~~-~~~~~l~~~------~-- 296 (434)
T 2epj_A 238 ALLILDEVVTGFRLGLEGAQGYFN----------IEGDIIVL--GKIIGGGFPVGAVAGSR-EVMSLLTPQ------G-- 296 (434)
T ss_dssp CEEEEEETTTTTTSSTTHHHHHHT----------CCCSEEEE--EGGGGTTSSCEEEEECH-HHHTTBTTT------S--
T ss_pred CEEEEEcchhceeCCcchhhHHhC----------CCCCeeee--cchhcCCcceeeeeecH-HHHHhhccC------C--
Confidence 99999999987621 010 1111 12355554 49855555688877654 433221110 0
Q ss_pred CCCcccCCCCCch---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEecCCCeeEEEEecCCC---
Q 009181 381 VSPTVAGSRPGGL---IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIP---ELFIIGRPDMTIVAFGSDVV--- 451 (541)
Q Consensus 381 ~~~~~~gsr~~~~---~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~v~~~~~~~~v~f~~~~~--- 451 (541)
....++..... .++..++++.+.. ++..++..++++++++.|+++. ++....++...++++.+.+.
T Consensus 297 --~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 371 (434)
T 2epj_A 297 --KVFNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVS 371 (434)
T ss_dssp --SBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCS
T ss_pred --CcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcc
Confidence 00111111111 2233444443322 4567777788888888887641 33211123456677776531
Q ss_pred -----------CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 452 -----------DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 452 -----------~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+..++.+.|.++|+.+...+. ..+|+++. .+.+++++++++|+++++++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~-~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 372 NAAQARKADKKFYVKLHEEMLRRGVFIAPSNL-EAVFTGLP-HQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp SHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTT-CSHHHHHHHHHHHHHHHHHHH
T ss_pred cchhccccCHHHHHHHHHHHHHCCeEEeccCC-CcEEEecc-CCHHHHHHHHHHHHHHHHHHh
Confidence 246788899999987765443 34555432 244999999999999988764
No 226
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.76 E-value=2.7e-17 Score=173.90 Aligned_cols=295 Identities=12% Similarity=0.114 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH-h---
Q 009181 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-Q--- 244 (541)
Q Consensus 169 ~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~-~--- 244 (541)
..+++.++.++++++++ +.+. + ++|+||++|+..+++++|... .+ ++|++.++.|+.+...+ .
T Consensus 95 ~~~~~~~la~~l~~~~~-~~~~----v--~~~~gg~eA~~~al~~ar~~~---~~---~~vi~~~~~yhg~~~~~~~~~~ 161 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFP-SIRK----L--RFTGSGTETTLLALRVARAFT---GR---RMILRFEGHYHGWHDFSASGYN 161 (453)
T ss_dssp SCHHHHHHHHHHHHHCT-TCSE----E--EEESCHHHHHHHHHHHHHHHH---CC---CEEEEECC--------------
T ss_pred CCHHHHHHHHHHHhhCC-CCCE----E--EEeCCHHHHHHHHHHHHHHhh---CC---CEEEEEcCCcCCCchhhHhhcC
Confidence 45678889999999886 4333 5 899999999999999976422 12 57888777665433321 1
Q ss_pred -------hcCC------eEEEeeCCCCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC----HHHHHHHHHHcCC
Q 009181 245 -------YFNI------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGT 304 (541)
Q Consensus 245 -------~~G~------~v~~v~~~~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i 304 (541)
..|+ .+..+|. .|+++|+++++ +++++|+++..++++|.+.| +++|.++|++||+
T Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~ 236 (453)
T 2cy8_A 162 SHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA 236 (453)
T ss_dssp --------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC
T ss_pred CccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 1233 2344443 38999999997 46778777776677998877 9999999999999
Q ss_pred EEEEeCCcccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCc
Q 009181 305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384 (541)
Q Consensus 305 ~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (541)
+|++|++|+++ .. ...+ .++......|++++ .|.+.++..+|+++.++ ++......... + ..
T Consensus 237 ~lI~DEv~~g~-~~--g~~~----~~~~~~~~~di~s~--sK~l~~G~~~G~v~~~~-~~~~~l~~~~~----~----~~ 298 (453)
T 2cy8_A 237 LFILDEVISGF-RV--GNHG----MQALLDVQPDLTCL--AKASAGGLPGGILGGRE-DVMGVLSRGSD----R----KV 298 (453)
T ss_dssp EEEEECTTTTT-TT--CTTH----HHHHHTCCCSEEEE--EGGGGTTSSCEEEEECH-HHHTTSSSCC------------
T ss_pred EEEEecCcccc-cc--Cchh----hhHHhCCCCcEEEE--ChhhhCCcceEEEechH-HHHHHhccccC----C----Cc
Confidence 99999999876 21 0000 00000112355544 49865566789877764 43322111000 0 00
Q ss_pred ccCCCCCchHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhhcC----CCeEEecCCCeeEEEEecCC-----C---
Q 009181 385 VAGSRPGGLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGIKEI----PELFIIGRPDMTIVAFGSDV-----V--- 451 (541)
Q Consensus 385 ~~gsr~~~~~a~~~~al~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~f~~~~-----~--- 451 (541)
..++.......++.+++..+.. . .++..++..++++++++.|+++ +....+ ++...++++.+.+ .
T Consensus 299 ~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~ 376 (453)
T 2cy8_A 299 LHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLA-YGRFSGFHLMPGLPPNTTDTGS 376 (453)
T ss_dssp -----CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-ECCTTEEEEEETSCTTCCCCHH
T ss_pred eeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEeeeEEEEEEecccccccccc
Confidence 0111111122234443333322 1 2456677778888888888664 322222 3455677777653 1
Q ss_pred ---------C---HHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHcC
Q 009181 452 ---------D---IFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQN 505 (541)
Q Consensus 452 ---------~---~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~~ 505 (541)
+ ..++.+.|.++|+.+... +.+|++. ..+.+++++++++|+++++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~---~~~~l~~-~~t~~~i~~~l~~l~~~l~~~~~~ 438 (453)
T 2cy8_A 377 ITRAEVARPDVKMIAAMRMALILEGVDIGGR---GSVFLSA-QHEREHVEHLVTTFDRVLDRLADE 438 (453)
T ss_dssp HHTTCSCCCCHHHHHHHHHHHHHTTEECBTT---TEEECCT-TCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccHHHHHHHHHHHHHCCeEEeCC---CCEEeec-cCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1 467888999999877432 2356542 234499999999999999988764
No 227
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.76 E-value=5e-17 Score=170.57 Aligned_cols=289 Identities=13% Similarity=0.118 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHH-HHhhcC--
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK-AAQYFN-- 247 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~k-a~~~~G-- 247 (541)
....++.++++++++ +.+. + ++|+|||+|+..|+++++... . +++|++.+..|+.... ++...+
T Consensus 93 ~~~~~la~~l~~~~~-~~~~----v--~~~~sGsea~~~al~~a~~~~---~---~~~ii~~~~~yhg~~~~~~~~~~~~ 159 (429)
T 4e77_A 93 EMEVKMAQLVTDLVP-TMDM----V--RMVNSGTEATMSAIRLARGYT---G---RDKIIKFEGCYHGHADCLLVKAGSG 159 (429)
T ss_dssp HHHHHHHHHHHHHST-TCSE----E--EEESSHHHHHHHHHHHHHHHH---C---CCEEEEETTCCCC------------
T ss_pred HHHHHHHHHHHhhCC-CCCE----E--EEeCcHHHHHHHHHHHHHHhh---C---CCEEEEEcCccCCCChhhhhhcCCc
Confidence 345567778888887 3333 5 999999999999999887532 1 2577776666554332 221111
Q ss_pred -----------C------eEEEeeCCCCCccCHHHHHHhhcc---CceEEEeecCCCCCccccC----HHHHHHHHHHcC
Q 009181 248 -----------I------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHG 303 (541)
Q Consensus 248 -----------~------~v~~v~~~~~~~~d~~~Le~~i~~---~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~ 303 (541)
+ .+..++.+ |+++|++++++ ++++|+++..+++.|.+.+ +++|.++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 4e77_A 160 ALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFG 234 (429)
T ss_dssp ------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred ccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 1 22333322 89999999974 5667776666666778877 999999999999
Q ss_pred CEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC--ceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccC
Q 009181 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (541)
Q Consensus 304 i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g--vdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 381 (541)
++||+|++|++| .. .. .+.....+ .|.++++ |.+.++.++|+++. ++++.........
T Consensus 235 ~lli~DEv~~g~-r~--g~------~~~~~~~~~~pdi~t~s--K~~~~G~~~G~~~~-~~~~~~~l~~~~~-------- 294 (429)
T 4e77_A 235 ALLIIDEVMTGF-RV--AL------AGAQDYYHVIPDLTCLG--KIIGGGMPVGAFGG-RREVMNALAPTGP-------- 294 (429)
T ss_dssp CEEEEEETTTBT-TT--BT------TCHHHHTTCCCSEEEEE--GGGGTTSCCEEEEE-CHHHHTTBTTTSS--------
T ss_pred CEEEEeccccCc-cc--Cc------chHHHhcCCCCCeeeec--ccccCCCCeEEEEE-CHHHHHHhccCCC--------
Confidence 999999999977 31 10 01111112 2666554 88666667887655 4444332211000
Q ss_pred CCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEecCCCeeEEEEecCCCC------
Q 009181 382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI---PELFIIGRPDMTIVAFGSDVVD------ 452 (541)
Q Consensus 382 ~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~f~~~~~~------ 452 (541)
...++.......++.+++..+..-.-++..++..++.+++++.|+++ .++....++...++++.+.+.+
T Consensus 295 --~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 372 (429)
T 4e77_A 295 --VYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQ 372 (429)
T ss_dssp --BCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHH
T ss_pred --ccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCccccccc
Confidence 01111112222344444333321111345566666666666666542 1221111233556666654321
Q ss_pred ---------HHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 009181 453 ---------IFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVET 501 (541)
Q Consensus 453 ---------~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~ 501 (541)
..++.+.|.++|+.+...+. ..+|++.. .+.+++++++++|++++++
T Consensus 373 ~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~~~~~~~-~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 373 DVMNCDVERFKRFFHLMLEEGVYLAPSAF-EAGFMSLA-HSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTT-CCHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHCCeEEeecCC-CCEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 26788899999988766543 34555422 2449999999999998753
No 228
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.76 E-value=2.6e-17 Score=171.63 Aligned_cols=324 Identities=13% Similarity=0.128 Sum_probs=200.9
Q ss_pred HHHHHHHHhhcccCCC-CcccchHHHHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCC
Q 009181 146 SLINEACSMFAHTNPL-HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (541)
Q Consensus 146 ~~~~~~~~~~~~~n~~-~~~~~~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi 224 (541)
..+.++.......+.. .|....|..++.+.+.+++ +|-.... +.+..+.|.|||.|+..++..+.... ..+|
T Consensus 65 ~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~~--~~~~~~qt~ggtga~~~a~~~l~~~~-~~pg- 137 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVEL--ENLVAVQTLSGTGAVSLGAKLLTRVF-DAET- 137 (420)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---CG--GGEEEEEEEHHHHHHHHHHHHHTTTS-CTTT-
T ss_pred HHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCccc--cccceeeecCchHHHHHHHHHHHHhc-CCCC-
Confidence 4455554444444333 3666677777776555443 3322110 12344669999999998887765322 1255
Q ss_pred CCCeEEecCCccchHHHHHhhcCCe-EEEeeCC--CCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC---HHHH
Q 009181 225 TRPEMIIPVSAHSAYDKAAQYFNIK-LWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQEL 295 (541)
Q Consensus 225 ~~~~vi~~~~~h~s~~ka~~~~G~~-v~~v~~~--~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~---i~~I 295 (541)
++|+++++.++++...++..|.+ +...+.. +++.+|.+.+.+.+. +++++++.+.|+||||...+ +++|
T Consensus 138 --d~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i 215 (420)
T 4h51_A 138 --TPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEI 215 (420)
T ss_dssp --SCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred --CEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 89999999999999999999997 4444442 367789999888774 56789999999999999865 7789
Q ss_pred HHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCC-ceEEEeCCCCCCCCCC--CceEEEEecccccccc----
Q 009181 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG-VTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQ---- 368 (541)
Q Consensus 296 ~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~g-vdsis~~~hK~~~~p~--g~g~ll~~~~~~~~~~---- 368 (541)
+++|++++++++.|++|.++..--...... ....+...+ -.+++.++.|. ++.+ .+|++....+......
T Consensus 216 ~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~s~SK~-~~~~G~RvG~~~~~~~~~~~~~~~~~ 292 (420)
T 4h51_A 216 ASLMLAKHHQVFFDSAYQGYASGSLDTDAY--AARLFARRGIEVLLAQSFSKN-MGLYSERAGTLSLLLKDKTKRADVKS 292 (420)
T ss_dssp HHHHHHHTCEEEEEESCTTTTTSCHHHHTH--HHHHHHHTTCCCEEEEECTTT-SCCGGGCEEEEEEECSCHHHHHHHHH
T ss_pred HHHHHhcCceEeeehhhhhhccCCcccchH--HHHhHHhhCceEEEEeccccc-cccccCceEEEEecccCHHHHHHHHH
Confidence 999999999999999998875310000000 000000111 13556678896 4444 4898877655322110
Q ss_pred -c--ccccccCCCccCCCcccCCCCCchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHhhcC--CC-eE
Q 009181 369 -F--VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG--------QEGYLENTKAIMEVSESIQKGIKEI--PE-LF 434 (541)
Q Consensus 369 -~--~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~--~~-~~ 434 (541)
. .....| ..+ ...++.++...+. .+.++.+.+++.++++.|.+.|++. ++ |.
T Consensus 293 ~l~~~~r~~~-----s~~---------p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~ 358 (420)
T 4h51_A 293 VMDSLIREEY-----TCP---------PAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWE 358 (420)
T ss_dssp HHHHHHHTTT-----SSC---------CHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCT
T ss_pred HHHHhhhccc-----Ccc---------hHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 0 001111 111 1223333333332 3456677888889999999999875 11 33
Q ss_pred EecCCCeeEEEEecCCCCHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 435 IIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 435 v~~~~~~~~v~f~~~~~~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
.+.++. ++++|. +.+.. ..+.|.+.|+.+..- -|||+...+.+.|++++++|.++++++.+
T Consensus 359 ~i~~q~-GmF~~~--gls~e-~v~~L~e~~Vy~~~~-----gRis~Agl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 359 HVINQI-GMFSFL--GLSKA-QCEYCQNHNIFITVS-----GRANMAGLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp HHHHCC-SSEEEC--CCCHH-HHHHHHHTTEECCTT-----CEEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred eecCCC-ceEEec--CcCHH-HHHHHHhCCEEEcCC-----CEEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence 233333 444443 34443 357888888766532 29999988889999999999999988764
No 229
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.75 E-value=2.3e-17 Score=173.25 Aligned_cols=284 Identities=14% Similarity=0.118 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHHhhcCC---
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYFNI--- 248 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~~~~G~--- 248 (541)
..++.+.++++++ +.+. + ++|+|||+|+..|+++++... .+ ++|++.++++.. ...+....|.
T Consensus 95 ~~~l~~~la~~~~-~~~~----v--~~~~~Gsea~~~ai~~a~~~~---~~---~~vi~~~~~yhg~~~~~~~~~g~~~~ 161 (429)
T 3k28_A 95 ENKLAKLVIERVP-SIEI----V--RMVNSGTEATMSALRLARGYT---GR---NKILKFIGCYHGHGDSLLIKAGSGVA 161 (429)
T ss_dssp HHHHHHHHHHHST-TCSE----E--EEESSHHHHHHHHHHHHHHHH---TC---CEEEEEETCCCCSCGGGCSSCCTTC-
T ss_pred HHHHHHHHHHhCC-CCCE----E--EEeCChHHHHHHHHHHHHHhh---CC---CEEEEECCCcCCCcHHHHHhcCCccc
Confidence 3456668888876 3333 5 899999999999999987532 12 677776665543 3333322232
Q ss_pred ----------------eEEEeeCCCCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC----HHHHHHHHHHcCCE
Q 009181 249 ----------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTC 305 (541)
Q Consensus 249 ----------------~v~~v~~~~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i~ 305 (541)
.+..+|.+ |+++|+++++ +++.+|+++..+++.|.+.+ +++|.++|++||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 236 (429)
T 3k28_A 162 TLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGAL 236 (429)
T ss_dssp ----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCE
T ss_pred ccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 22333332 8999999997 46778888887778888888 99999999999999
Q ss_pred EEEeCCcccchhh---h-hhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccC
Q 009181 306 LHVDLCLGGFVLP---F-AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (541)
Q Consensus 306 lhvD~a~gg~~~~---f-~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 381 (541)
||+|++|.+| .. + .+..+ ...|.++++ |.+.++.++|+++.+ +++........
T Consensus 237 li~DEv~~g~-~~g~~~~~~~~~----------~~~di~t~s--K~~~~G~~iG~~~~~-~~~~~~~~~~~--------- 293 (429)
T 3k28_A 237 LIFDEVMTGF-RVAYNCGQGYYG----------VTPDLTCLG--KVIGGGLPVGAYGGK-AEIMRQVAPSG--------- 293 (429)
T ss_dssp EEEECTTTTT-TSSTTHHHHHHT----------CCCSEEEEC--GGGGTTSCCEEEEEC-HHHHTTBTTTS---------
T ss_pred EEEecccccc-ccCcchHHHHhC----------CCCceehhh--hhhcCCCCeEEEEEc-HHHHhhhccCC---------
Confidence 9999999876 31 0 01111 123566654 876556778987664 44433221100
Q ss_pred CCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----CCeEEecCCCeeEEEEecCCC------
Q 009181 382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI----PELFIIGRPDMTIVAFGSDVV------ 451 (541)
Q Consensus 382 ~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~v~~~~~~~~v~f~~~~~------ 451 (541)
....++.......++.+++..+.... ++..++..++++++++.|+++ +.+..+ ++...++.|.+.+.
T Consensus 294 -~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~ 370 (429)
T 3k28_A 294 -PIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTDEPVINYD 370 (429)
T ss_dssp -SBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSSCCCSHH
T ss_pred -CccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEecCCccccc
Confidence 01111112222334555444443111 567777777888888777653 332222 23345666654321
Q ss_pred --------CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009181 452 --------DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETV 502 (541)
Q Consensus 452 --------~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l 502 (541)
...++.+.|.++|+.+...+ .+.+|+++. .+.+++++++++|+++++++
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~r~~~~-~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 371 AAKSSNLQFFAAYYREMVEQGVFLPPSQ-FEGLFLSTV-HSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp HHTTSCHHHHHHHHHHHHHTTEECCSST-TSCBCCCTT-CCHHHHHHHHHHHHHHHHTC
T ss_pred ccccccHHHHHHHHHHHHHCCeEEecCC-CCCEEEECC-CCHHHHHHHHHHHHHHHHHH
Confidence 13678889999998776543 346788643 34599999999999998764
No 230
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.72 E-value=2e-15 Score=154.06 Aligned_cols=303 Identities=12% Similarity=0.081 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCCccce--EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccc---hHH-
Q 009181 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCG--NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS---AYD- 240 (541)
Q Consensus 167 ~~~~~~e~ev~~~la~l~g~~~~~~~~~v~G--~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~---s~~- 240 (541)
..+.++|.-+++...++||++... +| +-..+|+.||+.+..++.+ +| |.|+..+..|- +.-
T Consensus 96 e~vD~iE~la~~rak~lF~a~~A~-----w~VNVQP~SGs~AN~avy~All~-----PG---D~ilg~~l~~GGHltHg~ 162 (490)
T 3ou5_A 96 EVVDEIELLCQRRALEAFDLDPAQ-----WGVNVQPYSGSPANLAVYTALLQ-----PH---DRIMGLDLPDGGHLTHGY 162 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTT-----EEEECCCSSHHHHHHHHHHHHCC------C---CCEECBC-----------
T ss_pred hHHHHHHHHHHHHHHHHhCCCccc-----cCCCCCcCCHHHHHHHHHHHHcC-----CC---CEEEecccCCCCcccccc
Confidence 457789998999999999999763 32 4566799999999999874 78 89987665543 322
Q ss_pred ----HHHhhcCC--eEEEeeCCC-CCccCHHHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCc
Q 009181 241 ----KAAQYFNI--KLWRVPVDK-EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL 312 (541)
Q Consensus 241 ----ka~~~~G~--~v~~v~~~~-~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~ 312 (541)
+.....|. +....++++ ++.+|.+++++... .+|++|++-.-.+ -...|++++.++|++.|.+|++|.++
T Consensus 163 ~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY--~r~id~~~~reIAd~vGA~Lm~DmAH 240 (490)
T 3ou5_A 163 MSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAH 240 (490)
T ss_dssp -----------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECGG
T ss_pred cCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccC--ccccCHHHHHHHHhhcccEEEechhh
Confidence 22233344 344445554 89999999998776 4799888766554 45779999999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccc---------ccc--ccccccCCCccC
Q 009181 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRK---------HQF--VAVTEWSGGLYV 381 (541)
Q Consensus 313 gg~~~~f~~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~---------~~~--~~~~~~~~~~~~ 381 (541)
-.+++. .|.-..|+ +.+|+++.++||.+.||. .|++++++..... +.+ .... ..
T Consensus 241 iaGLVA----~g~~psP~----~~ADvVTtTTHKTLrGPr-GG~Il~~~~~~~~~~k~~~~~~~~~~kkin~------aV 305 (490)
T 3ou5_A 241 ISGLVA----AKVIPSPF----KHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRINF------AV 305 (490)
T ss_dssp GHHHHH----TTSSCCGG----GTCSEEEEESSSTTCSCS-CEEEEEECSEEEECC--CCEEECCCHHHHHH------HH
T ss_pred hhhhhc----ccccCCcc----ccceEEeccccccccCCC-ceEEEeccccccccccccchhHHHHHHHHHh------hc
Confidence 666552 22101123 336999999999977777 5667777631100 000 0000 01
Q ss_pred CCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEecC-CCeeEEEEecC--CCCHHHHHH
Q 009181 382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGR-PDMTIVAFGSD--VVDIFEVND 458 (541)
Q Consensus 382 ~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~v~~~-~~~~~v~f~~~--~~~~~~l~~ 458 (541)
-|.+.|..--..+++...++..-....+++..+++.++++.|++.|.+. |++++.. .+.+++.+... +.+..+..+
T Consensus 306 FPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~ 384 (490)
T 3ou5_A 306 FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAER 384 (490)
T ss_dssp TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEEEeccccCCCHHHHHH
Confidence 1233333333446666666665555678999999999999999999997 9999843 44666666654 457788888
Q ss_pred HHHhCCceeccC--------CCCCeEEEEecCCCH-----HHHHHHHHHHHHHHH
Q 009181 459 IMSSKGWHLNPL--------QRPNSIHICVTLQHV-----AVVDVFLRDLRESVE 500 (541)
Q Consensus 459 ~l~~~G~~~~~~--------~~~~~iRi~~~~~~~-----e~id~~i~~L~~~~~ 500 (541)
.|.+.|+.++.- ..+..|||.....++ +|++++.+.|.+++.
T Consensus 385 ~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 385 VLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999766531 123689998776554 788888888887765
No 231
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.70 E-value=2.1e-16 Score=165.47 Aligned_cols=283 Identities=16% Similarity=0.114 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHH-hh---
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-QY--- 245 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~-~~--- 245 (541)
.....++.++++++++ +.+. + ++|+||++|+..+++++|... ++ ++|++.++.|+.+...+ ..
T Consensus 91 ~~~~~~l~~~l~~~~~-~~~~----v--~~~~~g~ea~~~al~~ar~~~---~~---~~vi~~~~~yhg~~~~~~~~~~~ 157 (424)
T 2e7u_A 91 SPLEVALAKKVKRAYP-FVDL----V--RFVNSGTEATMSALRLARGYT---GR---PYIVKFRGNYHGHADGLLVEAGS 157 (424)
T ss_dssp CHHHHHHHHHHHHHCT-TCCE----E--EEESSHHHHHHHHHHHHHHHH---CC---CEEEEETTCCCCCCGGGSEECCS
T ss_pred CHHHHHHHHHHHHhCC-CCCE----E--EEeCCHHHHHHHHHHHHHHhh---CC---CEEEEECCCcCCCcHHHHHhcCC
Confidence 3455667778888886 3333 5 899999999999999876432 22 67877777765533322 11
Q ss_pred ----------cCC------eEEEeeCCCCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC----HHHHHHHHHHc
Q 009181 246 ----------FNI------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSH 302 (541)
Q Consensus 246 ----------~G~------~v~~v~~~~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~ 302 (541)
.|+ ++..+|. .|+++|+++++ +++++|+++..++++|.+.| +++|.++ ++|
T Consensus 158 ~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~ 231 (424)
T 2e7u_A 158 GALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAY 231 (424)
T ss_dssp SSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGG
T ss_pred cccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc
Confidence 232 3555554 38999999997 35666666555555898877 9999999 999
Q ss_pred CCEEEEeCCcccchh--hhh-hhcCCCCCCCCcCCCCceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCc
Q 009181 303 GTCLHVDLCLGGFVL--PFA-KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL 379 (541)
Q Consensus 303 ~i~lhvD~a~gg~~~--~f~-~~~g~~~p~~~~~~~gvdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~ 379 (541)
|++|++|++|+++.. .+. +..| ...|.++ ++|.+.++..+|+++.++ ++.........
T Consensus 232 g~~lI~DEv~~g~~~g~~~~~~~~~----------~~~di~s--~sK~l~~G~~~G~~~~~~-~~~~~~~~~~~------ 292 (424)
T 2e7u_A 232 GVLLIADEVMTGFRLAFGGATELLG----------LKPDLVT--LGKILGGGLPAAAYAGRR-EIMEKVAPLGP------ 292 (424)
T ss_dssp TCEEEEECTTTTTTSSTTHHHHHHT----------CCCSEEE--ECGGGGTTSSCEEEEECH-HHHTTBTTTSS------
T ss_pred CCEEEEecCccccccchhHHHHHhC----------CCcchhh--hhhhhhCCcceEEEEEcH-HHHhhhcccCC------
Confidence 999999999987621 010 1111 1235554 459866656789877654 44332111000
Q ss_pred cCCCcccCCCCCch---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEecCCCeeEEEEecCCC--
Q 009181 380 YVSPTVAGSRPGGL---IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI---PELFIIGRPDMTIVAFGSDVV-- 451 (541)
Q Consensus 380 ~~~~~~~gsr~~~~---~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~f~~~~~-- 451 (541)
...++..... .++..++++.+.. .++..++..++++++++.|+++ .++....++...++++.+.+.
T Consensus 293 ----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 366 (424)
T 2e7u_A 293 ----VYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPV 366 (424)
T ss_dssp ----BCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCC
T ss_pred ----cccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCC
Confidence 0011111111 2233444443322 2557777888888888888764 133211123456777776531
Q ss_pred ------------CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHH
Q 009181 452 ------------DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRES 498 (541)
Q Consensus 452 ------------~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~ 498 (541)
+..++.+.|.++|+.+...+. ..+|+++. .+.+++++++++|+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~-~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 367 VTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF-EAAFLSVA-HREEDVEKTLEALRKA 423 (424)
T ss_dssp CSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-SCEECCTT-CCHHHHHHHHHHHHHH
T ss_pred cchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-CceEeecc-CCHHHHHHHHHHHHHh
Confidence 245788899999987765443 34565532 3449999999999875
No 232
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.61 E-value=1.6e-14 Score=152.47 Aligned_cols=306 Identities=14% Similarity=0.067 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHHhhcC----
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYFN---- 247 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~~~~G---- 247 (541)
+.++.+.++++.+.+.+. + .|+++||||+..|++.+|.+..++....+.+|+.-..+|.. ...++...|
T Consensus 113 ~~~lAe~L~~~~p~~~~~----v--~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~ 186 (473)
T 4e3q_A 113 TVMLSEKLVEVSPFDSGR----V--FYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYN 186 (473)
T ss_dssp HHHHHHHHHHHSSCSSCE----E--EEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGG
T ss_pred HHHHHHHHHhhCCCCccE----E--EEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccc
Confidence 445677888888665443 5 89999999999999999876544222234567766665443 333333322
Q ss_pred -------CeEEEeeCCC------CCcc-------CHHHHHHhhc----cCceEEEeecCCCCCccccC----HHHHHHHH
Q 009181 248 -------IKLWRVPVDK------EFRA-------DVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGELA 299 (541)
Q Consensus 248 -------~~v~~v~~~~------~~~~-------d~~~Le~~i~----~~t~~vv~~~~~~~~G~id~----i~~I~~la 299 (541)
.....++... .+.. ..+++++.|. +++.+|++......-|.+.| +++|.++|
T Consensus 187 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc 266 (473)
T 4e3q_A 187 SVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPIL 266 (473)
T ss_dssp GGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred cccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHh
Confidence 1344454321 1111 1345555553 35678888888877787755 89999999
Q ss_pred HHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCc--eEEEeCCCCCCCCC-CCceEEEEecccccccccccccccC
Q 009181 300 LSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWS 376 (541)
Q Consensus 300 ~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gv--dsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~ 376 (541)
++||++|++|+++.||.. .|. -+.+...|+ |++++. |.+.++ ...|+++.+++-. .......
T Consensus 267 ~~~gilLI~DEV~tGfGR-----tG~---~fa~e~~gv~PDi~t~~--K~l~gG~~Pl~av~~~~~i~-~~~~~~~---- 331 (473)
T 4e3q_A 267 RKYDIPVISDEVICGFGR-----TGN---TWGCVTYDFTPDAIISS--KNLTAGFFPMGAVILGPELS-KRLETAI---- 331 (473)
T ss_dssp HHTTCCEEEECTTTSSST-----TSS---SCHHHHTTCCCSEEEEC--GGGGTTSSCCEEEEECHHHH-HHHHHHH----
T ss_pred cccceEEeccCccccCCc-----ccc---hhHHHhcCCCCChHHhc--ccccCCCCCcccccccHHHH-HHhcccc----
Confidence 999999999999988743 121 122223343 888776 765444 5678777765422 1110000
Q ss_pred CCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEecCCCeeEEEEecCC---
Q 009181 377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI---PELFIIGRPDMTIVAFGSDV--- 450 (541)
Q Consensus 377 ~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~v~~~~~~~~v~f~~~~--- 450 (541)
....+...|+.+++..+++.+++..+..-.-++..++..++.++|.+.|+++ |.+.-+. ....++.+.+..
T Consensus 332 --~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~~gielv~~~~ 408 (473)
T 4e3q_A 332 --EAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYR-GIGFMWALEAVKDKA 408 (473)
T ss_dssp --HHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTT
T ss_pred --ccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEe-ecceEEEEEEecCcc
Confidence 0001122333444334455555555443333455666777788888887764 4432111 112344443311
Q ss_pred ----C-----CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCH-HHHHHHHHHHHHHHHHHHc
Q 009181 451 ----V-----DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV-AVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 451 ----~-----~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~l~~ 504 (541)
. -..++.+.+.++|..+...+ +.+|++++...+ +++|++++.|+++++++.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g--~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 409 SKTPFDGNLSVSERIANTCTDLGLICRPLG--QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp TTBCCCGGGCHHHHHHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHCCcEEEecC--CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 14568889999998876654 589998776544 9999999999999987654
No 233
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.59 E-value=8.7e-13 Score=138.71 Aligned_cols=294 Identities=18% Similarity=0.124 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHHhhcC----
Q 009181 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYFN---- 247 (541)
Q Consensus 173 e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~~~~G---- 247 (541)
+.++.+.+++++..+..+ .+ .|+++||||+..|++.+|.+.. +.+|+.-+.+|.. ...+....+
T Consensus 109 ~~~lae~L~~~~p~~~~~---~v--~f~~sGsEA~e~AlklAr~~t~------r~~ii~~~~~yHG~t~~als~t~~~~~ 177 (456)
T 4atq_A 109 YVAVTEQLNRLTPGDHAK---RT--VLFNSGAEAVENAVKVARLATG------RDAVVAFDHAYHGRTNLTMALTAKAMP 177 (456)
T ss_dssp HHHHHHHHHHHSSCSSCE---EE--EEESSHHHHHHHHHHHHHHHHC------CCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred HHHHHHHHHHhCCCCCCc---EE--EEeCChHHHHHHHHHHHhhhhc------CCeEEEEecccCCccccccccccCccc
Confidence 345666788887654322 14 7899999999999999987532 2567776665443 333332221
Q ss_pred ---------CeEEEeeCCCC------CccCHHHHHHhh-------c-cCceEEEeecCCCCCccccC----HHHHHHHHH
Q 009181 248 ---------IKLWRVPVDKE------FRADVKAIKKYI-------N-RNTVLIVGSAPGFPHGIIDP----IQELGELAL 300 (541)
Q Consensus 248 ---------~~v~~v~~~~~------~~~d~~~Le~~i-------~-~~t~~vv~~~~~~~~G~id~----i~~I~~la~ 300 (541)
-.+..+|.... ...+.+.+++.+ . +++.+|++.......|.+.| +++|.++|+
T Consensus 178 ~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~ 257 (456)
T 4atq_A 178 YKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAK 257 (456)
T ss_dssp TTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH
T ss_pred cccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHh
Confidence 24667765421 112333333333 2 35788888888777787755 899999999
Q ss_pred HcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCCCc--eEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCC
Q 009181 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG 378 (541)
Q Consensus 301 ~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~gv--dsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~ 378 (541)
+||++|++|+++.||.. .|. -+.+...|| |++++. |.+.+....|+++.+++.... .
T Consensus 258 ~~gillI~DEV~tG~GR-----tG~---~~a~e~~gv~PDivt~g--K~lggg~P~~av~~~~~i~~~-~---------- 316 (456)
T 4atq_A 258 EKGIVFIADEVQSGFCR-----TGE---WFAVDHEGVVPDIITMA--KGIAGGLPLSAITGRADLLDA-V---------- 316 (456)
T ss_dssp HHTCEEEEECTTTTTTT-----TSS---SSGGGGTTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTT-S----------
T ss_pred hcCCceEecccccccCC-----ccc---cccccccCCCCchhhhh--hcccCcCCceeeEecHHHHhc-c----------
Confidence 99999999999988643 222 233344454 888886 665566677877877653211 0
Q ss_pred ccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----CC--eEEecCC--CeeEEEEecCC
Q 009181 379 LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI----PE--LFIIGRP--DMTIVAFGSDV 450 (541)
Q Consensus 379 ~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~--~~v~~~~--~~~~v~f~~~~ 450 (541)
.+...++.+++..+++.+++..+..-.-++..++..++.+++.+.|+++ +. ..++++. ...++.+.+..
T Consensus 317 ---~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~ 393 (456)
T 4atq_A 317 ---HPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQ 393 (456)
T ss_dssp ---CTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBC
T ss_pred ---cccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEec
Confidence 0111223333333344444444432222344556666666676666543 21 1222221 13344444321
Q ss_pred C-----C---HHHHHHHHHhCCceeccCC-CCCeEEEEecCCCH-HHHHHHHHHHHHHHHH
Q 009181 451 V-----D---IFEVNDIMSSKGWHLNPLQ-RPNSIHICVTLQHV-AVVDVFLRDLRESVET 501 (541)
Q Consensus 451 ~-----~---~~~l~~~l~~~G~~~~~~~-~~~~iRi~~~~~~~-e~id~~i~~L~~~~~~ 501 (541)
. + ..++.+.+.++|..+...+ .++.+|++++...+ +++|++++.|+++++.
T Consensus 394 ~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 394 PGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp TTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 1 4568889999998765443 34789998876544 9999999999999874
No 234
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.56 E-value=1.6e-13 Score=143.76 Aligned_cols=284 Identities=15% Similarity=0.128 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHHhhc----
Q 009181 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYF---- 246 (541)
Q Consensus 172 ~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~~~~---- 246 (541)
.+.++.+.+++++...+ . + .|+++||||++.|++.+|.+.. +++|+..+.+|.. ...+....
T Consensus 128 ~~~~lae~l~~~~p~~~-~----v--~f~~SGsEA~e~AiklAr~~tg------r~~ii~~~~~yHG~t~~~~~~~~~~~ 194 (454)
T 4ao9_A 128 LEGRLARLICERFPQIE-Q----L--RFTNSGTEANLMALTAALHFTG------RRKIVVFSGGYHGGVLGFGARPSPTT 194 (454)
T ss_dssp SHHHHHHHHHHHSTTCS-E----E--EEESSHHHHHHHHHHHHHHHHT------CCEEEEETTCBCSTTCBBSSSBCTTS
T ss_pred HHHHHHHHHHHhCCCCC-E----E--EEeCchHHHHHHHHHHHHhccc------CCeEEEEeCCcCCccccccccccCcc
Confidence 34556667888875322 2 4 8999999999999999997542 2567665555433 21111111
Q ss_pred -CCeEEEeeCCCCCccCHHHHHHhhcc---CceEEEeecCCCCCccccC----HHHHHHHHHHcCCEEEEeCCcccchhh
Q 009181 247 -NIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLP 318 (541)
Q Consensus 247 -G~~v~~v~~~~~~~~d~~~Le~~i~~---~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i~lhvD~a~gg~~~~ 318 (541)
......+|.+ |.+++++.+++ ++.+|++.......|.+.| +++|.++|++||++|++|+++.|-.-.
T Consensus 195 ~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~ 269 (454)
T 4ao9_A 195 VPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAP 269 (454)
T ss_dssp CCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGST
T ss_pred CCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCcc
Confidence 1244555554 88999998874 5788888888888898877 999999999999999999998652111
Q ss_pred hhhhcCCCCCCCCcCCCCc--eEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCch---
Q 009181 319 FAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL--- 393 (541)
Q Consensus 319 f~~~~g~~~p~~~~~~~gv--dsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~--- 393 (541)
.+.....|| |.+++. |.+.++...|++..+.+ +..... + -. .+...++.+++.
T Consensus 270 ----------~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~e-i~~~~~---~-~~-----~~~~h~~T~~gnPla 327 (454)
T 4ao9_A 270 ----------HGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRAD-VMALFD---P-RT-----GPLAHSGTFNNNVMT 327 (454)
T ss_dssp ----------TCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHH-HHGGGC---T-TT-----CSCCCCCTTTTCHHH
T ss_pred ----------ccchhccCCCCcEEEec--cccCCCCcceeeeeHHH-HHHHHh---h-cc-----CCccccCCCCCCHHH
Confidence 111112222 777765 77666677887776654 322110 0 00 111122222222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC----CC-eEEecCCCeeEEEEecCC--C---------C---HH
Q 009181 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI----PE-LFIIGRPDMTIVAFGSDV--V---------D---IF 454 (541)
Q Consensus 394 ~a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~-~~v~~~~~~~~v~f~~~~--~---------~---~~ 454 (541)
.++..++|+.+..+ +..++..++.++|++.|+++ +- .++-+. ..++.+.+.+ . + ..
T Consensus 328 ~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~--G~m~gi~f~~~~~~~~~~~~~~d~~~~~ 402 (454)
T 4ao9_A 328 MAAGYAGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFTGI--GSLMNAHFVQGDVRSSEDLAAVDGRLRQ 402 (454)
T ss_dssp HHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEE--TTEEEEESCCSCCCSGGGGTTCCHHHHH
T ss_pred HHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeee--ceEEEEEEecCCCCCHHHHHhhhHHHHH
Confidence 23444555555433 44566666777777777653 11 122222 2344443311 1 1 13
Q ss_pred HHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHc
Q 009181 455 EVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVKQ 504 (541)
Q Consensus 455 ~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~~ 504 (541)
.+...|.++|+.+...+ .+.++.. .+.+|||+++++|++++.+..+
T Consensus 403 ~~~~~ll~~Gv~~~p~~---~~~~s~~-~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 403 LLFFHLLNEDIYSSPRG---FVVLSLP-LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp HHHHHHHHTTEECCTTC---EEECCTT-CCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHCCEEEcCCC---CEEEeCC-CCHHHHHHHHHHHHHHHHhccc
Confidence 45677889998775433 2333333 2449999999999999987653
No 235
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.33 E-value=3e-16 Score=165.54 Aligned_cols=291 Identities=15% Similarity=0.034 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccch-HHHHH---hh
Q 009181 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAA---QY 245 (541)
Q Consensus 170 ~~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s-~~ka~---~~ 245 (541)
...+.++.+.++++++ ..+. + .++++|++|+..|++++|.... +++|++.+.++.. ...+. ..
T Consensus 139 ~~~~~~Lae~L~~~~p-~~~~----v--~~~nSGseA~~~Aik~ar~~tg------r~~ii~~~~~yHG~~~~~~sg~~~ 205 (465)
T 2yky_A 139 TENEALFAEAVCDRFP-SIDL----V--RFTNSGTEANLMALATATAITG------RKTVLAFDGGYHGGLLNFASGHAP 205 (465)
Confidence 4556667778888885 2232 4 8999999999999999874321 2678877766544 33222 12
Q ss_pred cCC--eEEEeeCCCCCccCHHHHHHhhc---cCceEEEeecCCCCCccccC----HHHHHHHHHHcCCEEEEeCCcccch
Q 009181 246 FNI--KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFV 316 (541)
Q Consensus 246 ~G~--~v~~v~~~~~~~~d~~~Le~~i~---~~t~~vv~~~~~~~~G~id~----i~~I~~la~~~~i~lhvD~a~gg~~ 316 (541)
.|+ .+..+|. -|+++|+++++ +++++|++....+++|.+.| +++|.++|++||++|++|++|+ |-
T Consensus 206 ~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r 279 (465)
T 2yky_A 206 TNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SR 279 (465)
Confidence 233 3333443 28899999998 67888888876677997766 9999999999999999999998 52
Q ss_pred hhhhhhcCCCCCCCCcCCCC--ceEEEeCCCCCCCCCCCceEEEEecccccccccccccccCCCccCCCcccCCCCCchH
Q 009181 317 LPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLI 394 (541)
Q Consensus 317 ~~f~~~~g~~~p~~~~~~~g--vdsis~~~hK~~~~p~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~ 394 (541)
. .. .+.+...| .|+++ +.|++.++..+|+++.++ ++........ .+..+...+..+... ..
T Consensus 280 ~---g~------~~a~~~~gv~pDi~t--~sK~lg~G~piG~v~~~~-~i~~~l~~~~---~g~~~~~~T~~~npl--a~ 342 (465)
T 2yky_A 280 L---SG------GGAQEMLGISADLTT--LGKYIGGGMSFGAFGGRR-DLMERFDPAR---DGAFAHAGTFNNNIL--TM 342 (465)
Confidence 1 11 11112223 36554 459966555688766554 3332211100 000000111111111 12
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEe--cCCCeeEEEEecCC--C------------CHHHHH
Q 009181 395 AGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI-PELFII--GRPDMTIVAFGSDV--V------------DIFEVN 457 (541)
Q Consensus 395 a~~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~v~--~~~~~~~v~f~~~~--~------------~~~~l~ 457 (541)
++..++++.+.. .+..++..++.+++++.|+++ ....+. .+....++++.+.+ . ...++.
T Consensus 343 aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~ 419 (465)
T 2yky_A 343 SAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFF 419 (465)
Confidence 234445554433 346777778888888888764 122221 12345566665432 0 145678
Q ss_pred HHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009181 458 DIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVETVK 503 (541)
Q Consensus 458 ~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~~l~ 503 (541)
+.|.++|+.+...+.+. +++. .+.+|+|+++++|++++++++
T Consensus 420 ~~ll~~GV~v~p~~~~~---~s~~-~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 420 FHMLRKGIYLAPRGMYA---LSLE-IADAGRDAFAEALADFIGEQR 461 (465)
Confidence 88999998776544322 4332 233999999999999987764
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.46 E-value=1.7e-12 Score=145.95 Aligned_cols=301 Identities=13% Similarity=0.087 Sum_probs=169.4
Q ss_pred HHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHH-HHHHHhhcCC---------CCCeEEecCCc-cchHHHHH
Q 009181 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSS-RDYMRNKRGI---------TRPEMIIPVSA-HSAYDKAA 243 (541)
Q Consensus 175 ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~-r~~~~~~~Gi---------~~~~vi~~~~~-h~s~~ka~ 243 (541)
++.+.++++++.+.-+ .+ .|+++|++|+..|++++ |.+... +|. .+.+||.-..+ |.....++
T Consensus 428 ~Lae~L~~~~p~~~l~---~v--ff~~SGSeA~E~AlK~A~r~~~~~-~g~~~~~~~~~~~r~~iI~~~~syHG~T~gal 501 (831)
T 4a0g_A 428 KCAELLLDGVGKGWAS---RV--YFSDNGSTAIEIALKMAFRKFCVD-HNFCEATEEEKHIVVKVIALRGSYHGDTLGAM 501 (831)
T ss_dssp HHHHHHHHTTTTTTCC---EE--EEESSHHHHHHHHHHHHHHHHHHT-TTC---------CCEEEEEETTCCCCSSHHHH
T ss_pred HHHHHHHHhCCCCCCC---EE--EECCChhHHHHHHHHHHHHHHHhh-cCCCccccccccCccEEEEecCCcccCceeee
Confidence 4556788887644112 25 89999999999999999 444332 332 24467665554 55555555
Q ss_pred hhcCCe----------------------------EEEeeCCCCCc---------cC------------------HHHHHH
Q 009181 244 QYFNIK----------------------------LWRVPVDKEFR---------AD------------------VKAIKK 268 (541)
Q Consensus 244 ~~~G~~----------------------------v~~v~~~~~~~---------~d------------------~~~Le~ 268 (541)
...|.. +..++....++ -| .++|++
T Consensus 502 s~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 581 (831)
T 4a0g_A 502 EAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSK 581 (831)
T ss_dssp HTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred eccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHH
Confidence 544321 11233221110 01 267888
Q ss_pred hhc--------cCceEEEeecC-CCCCccccC----HHHHHHHHHHcCCEEEEeCCcccchhhhhhhcCCCCCCCCcCCC
Q 009181 269 YIN--------RNTVLIVGSAP-GFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ 335 (541)
Q Consensus 269 ~i~--------~~t~~vv~~~~-~~~~G~id~----i~~I~~la~~~~i~lhvD~a~gg~~~~f~~~~g~~~p~~~~~~~ 335 (541)
.|+ +++.+|++... ....|.+.+ +++|.++|++||++||+|+++.||.. .|. .+.+...
T Consensus 582 ~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGR-----tG~---~fa~e~~ 653 (831)
T 4a0g_A 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWR-----LGV---ETTTELL 653 (831)
T ss_dssp HC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTT-----TSB---SSTHHHH
T ss_pred HHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcccccc-----CCC---chhhHhc
Confidence 775 24667777765 666777754 89999999999999999999987633 111 1111222
Q ss_pred Cc--eEEEeCCCCCCCCC-CCceEEEEecccccccccccccccCCCccCCCcccCCCCCchHHHHHHHHHHHhHHHHHHH
Q 009181 336 GV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLEN 412 (541)
Q Consensus 336 gv--dsis~~~hK~~~~p-~g~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsr~~~~~a~~~~al~~lg~~g~~~~ 412 (541)
|+ |+++++ |.+.++ ...|+++.+++ +...... +........|..+++..+++.+++..+..-.-.+.
T Consensus 654 gv~PDiitls--K~L~gG~~Plgav~~~~~-i~~~~~~-------~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l 723 (831)
T 4a0g_A 654 GCKPDIACFA--KLLTGGMVPLAVTLATDA-VFDSFSG-------DSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET 723 (831)
T ss_dssp SSCCSEEEEC--GGGGTTSSCCEEEEECHH-HHHTTCS-------SCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCcEEEEe--cccccCccCcEEEEECHH-HHHHHhc-------ccccccceeecCCcccHHHHHHHHHHHHHHHhhHH
Confidence 33 777655 875444 35687777654 2221110 00001122233333334455555444321100111
Q ss_pred HHHHHHH--------HHHHHHHhhcCCCeEEecCCCeeEEEEecCCC---------CHHHHHHHHHhCCceeccCCCCCe
Q 009181 413 TKAIMEV--------SESIQKGIKEIPELFIIGRPDMTIVAFGSDVV---------DIFEVNDIMSSKGWHLNPLQRPNS 475 (541)
Q Consensus 413 ~~~~~~~--------a~~l~~~L~~~~~~~v~~~~~~~~v~f~~~~~---------~~~~l~~~l~~~G~~~~~~~~~~~ 475 (541)
.++..++ .+.+.+.+++.|.+.-+. ....++.+.+.+. ...++.+.+.++|+.+...+ +.
T Consensus 724 ~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g--~~ 800 (831)
T 4a0g_A 724 NHNITSQGKTLRELWDEELVQQISSHSAVQRVV-VIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLG--NV 800 (831)
T ss_dssp CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE-EETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCBT--TE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe-ecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEecC--CE
Confidence 2222111 123445566666654432 2234444443211 24578889999998877654 68
Q ss_pred EEEEecCCCH-HHHHHHHHHHHHHHHHH
Q 009181 476 IHICVTLQHV-AVVDVFLRDLRESVETV 502 (541)
Q Consensus 476 iRi~~~~~~~-e~id~~i~~L~~~~~~l 502 (541)
+|++++..++ ++++++++.|+++++++
T Consensus 801 lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 801 IYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999776655 99999999999988654
No 237
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=45.03 E-value=10 Score=38.94 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=29.6
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
.++..|+.++++++++.||++||.|++|.++-.
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH 101 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINH 101 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCc
Confidence 456789999999999999999999999999743
No 238
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=40.24 E-value=18 Score=32.39 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=36.5
Q ss_pred CHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcC--CEEEEeCCcc
Q 009181 262 DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLG 313 (541)
Q Consensus 262 d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~--i~lhvD~a~g 313 (541)
|.++|+++++.+...+++- +|.+..++++.+.++++| +.+|+|-+-|
T Consensus 18 ~~~~l~~al~s~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~G 66 (192)
T 3kts_A 18 NQKDMEKILELDLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLVNG 66 (192)
T ss_dssp SSHHHHHHTTSSCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGEET
T ss_pred CHHHHHHHHcCCCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCchhc
Confidence 7799999998765555443 467889999999999997 5567777754
No 239
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=40.10 E-value=44 Score=32.74 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=40.9
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+-+|+|..+.-+|..+.+ .|++ -.|++|+..-..-...++.+|++|+.++..
T Consensus 91 v~aSsGN~g~alA~~aa~------~G~~-~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 91 IEPTSGNMGISMAFMAAM------KGYK-MVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCE-EEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEeCCcHHHHHHHHHHHH------cCCc-EEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 567778999888888775 3432 468999888888888899999999988754
No 240
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=38.00 E-value=14 Score=37.72 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=29.0
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 281 APGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 281 ~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
..+...|+.++++++++.||++|+.|++|.++-
T Consensus 56 ~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 56 ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 345568999999999999999999999999964
No 241
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=37.64 E-value=34 Score=28.05 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=30.8
Q ss_pred HHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 263 VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 263 ~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++.++++....++.++++.+. . -+++.++|+++|+.++ ..|.|
T Consensus 72 ~~~v~e~~~~g~k~v~~~~G~-----~--~~e~~~~a~~~Girvv-~nC~g 114 (122)
T 3ff4_A 72 LSEYNYILSLKPKRVIFNPGT-----E--NEELEEILSENGIEPV-IGCTL 114 (122)
T ss_dssp GGGHHHHHHHCCSEEEECTTC-----C--CHHHHHHHHHTTCEEE-ESCHH
T ss_pred HHHHHHHHhcCCCEEEECCCC-----C--hHHHHHHHHHcCCeEE-CCcCe
Confidence 345666666677777776653 2 2799999999999988 47754
No 242
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=37.49 E-value=51 Score=31.94 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=36.9
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ ..|++|...-..-...++.+|++++.++.+
T Consensus 77 v~aSsGN~g~alA~aa~~------~G~~-~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 77 LEPTSGNTGISLAMAARL------KGYR-LICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCE-EEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred EEeCCcHHHHHHHHHHHH------cCCc-EEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 445567777777766654 3432 457888876666777888999999999864
No 243
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=36.58 E-value=1.5e+02 Score=26.61 Aligned_cols=129 Identities=9% Similarity=-0.070 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceEEcCcHHHHHHHHHHHHHHHHHhh--cCCCCCeEEecC---Cccch----HHH
Q 009181 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK--RGITRPEMIIPV---SAHSA----YDK 241 (541)
Q Consensus 171 ~~e~ev~~~la~l~g~~~~~~~~~v~G~~t~Ggt~a~~~al~a~r~~~~~~--~Gi~~~~vi~~~---~~h~s----~~k 241 (541)
+.-....+.+.++++...-. + .-.-=+++.+..++..+....... ..-++++|++.. ..|-- +..
T Consensus 41 ~~l~p~m~~VG~lw~~g~i~----v--~q~~~aa~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~gd~HdiG~~iv~~ 114 (215)
T 3ezx_A 41 KGLSVGMKIVGDKFEAAEIF----L--PQIMMSGKAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEGDIHDIGHRLVTT 114 (215)
T ss_dssp HTHHHHHHHHHHHHHTTSSC----H--HHHHHHHHHHHHHHHHHHHHHTSSCCC---CCEEEEEECTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCc----H--HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCCChhHHHHHHHHH
Confidence 33344556677777654321 1 001113455555555544433321 112235665432 34543 445
Q ss_pred HHhhcCCeEEEeeCCCCCccCHHHHHHhh-ccCceEEEe--ecCCCCCccccCHHHHHHHHHHcC----CEEEEeCC
Q 009181 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYI-NRNTVLIVG--SAPGFPHGIIDPIQELGELALSHG----TCLHVDLC 311 (541)
Q Consensus 242 a~~~~G~~v~~v~~~~~~~~d~~~Le~~i-~~~t~~vv~--~~~~~~~G~id~i~~I~~la~~~~----i~lhvD~a 311 (541)
..+..|.+++....+ +.++++.+++ +.++.+|.+ |.-. +.....++++.+..++.+ +.+++=|+
T Consensus 115 ~l~~~G~~Vi~LG~~----vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 115 MLGANGFQIVDLGVD----VLNENVVEEAAKHKGEKVLLVGSALM--TTSMLGQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHTSCEEEECCSS----CCHHHHHHHHHHTTTSCEEEEEECSS--HHHHTHHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred HHHHCCCeEEEcCCC----CCHHHHHHHHHHcCCCEEEEEchhcc--cCcHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 556679999887664 5778875544 556777777 6654 345667888888888874 67777666
No 244
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=34.84 E-value=19 Score=37.05 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=28.2
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++++.||++|+.|++|.++.
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 102 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVVLN 102 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34457999999999999999999999999964
No 245
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=34.42 E-value=76 Score=21.13 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=26.9
Q ss_pred eEEEEecCCCHHHHHHHHHHHHHHHHHHHcC
Q 009181 475 SIHICVTLQHVAVVDVFLRDLRESVETVKQN 505 (541)
Q Consensus 475 ~iRi~~~~~~~e~id~~i~~L~~~~~~l~~~ 505 (541)
.+|++++.-+..+.++|...|-++..++.-+
T Consensus 3 rvrisitartkkeaekfaailikvfaelgyn 33 (62)
T 2gjh_A 3 RVRISITARTKKEAEKFAAILIKVFAELGYN 33 (62)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHHhCcc
Confidence 5899999877789999999999999988754
No 246
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=34.30 E-value=50 Score=29.66 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=32.2
Q ss_pred ccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEE
Q 009181 271 NRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (541)
Q Consensus 271 ~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhv 308 (541)
.-.|..|++.-..+..|.....+++.++|++||+.++.
T Consensus 157 Gl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 157 GLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp TSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 34688888877767889999999999999999998763
No 247
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=34.13 E-value=20 Score=36.86 Aligned_cols=32 Identities=9% Similarity=-0.042 Sum_probs=28.1
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++++.||++|+.|++|.++-
T Consensus 73 idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 104 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKSNDINVYGDVVMN 104 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34457999999999999999999999999964
No 248
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=33.99 E-value=3e+02 Score=25.80 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=43.6
Q ss_pred CeEEecCCccchHHHHHhhcCCeEEEeeC-CCCCccCHHHHHHhh---cc-CceEEEeecCCCCCccccCHHHHHHHHHH
Q 009181 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DKEFRADVKAIKKYI---NR-NTVLIVGSAPGFPHGIIDPIQELGELALS 301 (541)
Q Consensus 227 ~~vi~~~~~h~s~~ka~~~~G~~v~~v~~-~~~~~~d~~~Le~~i---~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~ 301 (541)
..+++ .|++|...++.+|++...+.- .++....+.+|.+.+ ++ +..+|+.. ++.+. +-+..++++
T Consensus 180 ~~~v~---~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e-~~~~~------~~~~~la~~ 249 (286)
T 3gi1_A 180 KTFVT---QHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAE-DNVNP------KIAHAIAKS 249 (286)
T ss_dssp CEEEE---EESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEEC-TTSCT------HHHHHHHHT
T ss_pred CEEEE---ECCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe-CCCCh------HHHHHHHHH
Confidence 44554 699999999999999887653 334456666666655 34 45555544 44322 233456777
Q ss_pred cCCEEEE
Q 009181 302 HGTCLHV 308 (541)
Q Consensus 302 ~~i~lhv 308 (541)
.|+.+.+
T Consensus 250 ~g~~v~~ 256 (286)
T 3gi1_A 250 TGAKVKT 256 (286)
T ss_dssp TTCEEEE
T ss_pred hCCeEEE
Confidence 8887653
No 249
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=33.65 E-value=21 Score=36.26 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=28.1
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++++.||++|+.|++|.++.
T Consensus 79 id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 110 (435)
T 1mxg_A 79 VETRFGSKEELVRLIQTAHAYGIKVIADVVIN 110 (435)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 34457999999999999999999999999964
No 250
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=33.49 E-value=21 Score=36.79 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=28.2
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++++.||++|+.|++|.++.
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 106 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMN 106 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 34457999999999999999999999999964
No 251
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=33.45 E-value=41 Score=32.87 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=36.0
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ ..|++|...-..-...++.+|++++.++.+
T Consensus 82 v~aSsGN~g~alA~aa~~------~G~~-~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 82 IESTSGNTGIALCQAGAV------FGYR-VNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCC-EEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEECCcHHHHHHHHHHHH------cCCC-EEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 445557777766666654 3432 467888876666777888999999998753
No 252
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=33.30 E-value=18 Score=36.81 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=27.7
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+...|+.++++++++.||++|+.|++|.++.
T Consensus 63 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 93 (441)
T 1lwj_A 63 KAEYGSEREFKEMIEAFHDSGIKVVLDLPIH 93 (441)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3457999999999999999999999999874
No 253
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=33.05 E-value=1.6e+02 Score=26.12 Aligned_cols=68 Identities=9% Similarity=-0.012 Sum_probs=48.1
Q ss_pred HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcC----CEEEEeCCc
Q 009181 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHG----TCLHVDLCL 312 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~----i~lhvD~a~ 312 (541)
+....+..|.+++.+..+ +.++++.+++. .++.+|.++.-.+ .....+.++.+..++.+ +++++=|+.
T Consensus 108 va~~l~~~G~~v~~LG~~----vp~~~l~~~~~~~~~d~v~lS~~~~--~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 108 VAMMLESGGFTVYNLGVD----IEPGKFVEAVKKYQPDIVGMSALLT--TTMMNMKSTIDALIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp HHHHHHHTTCEEEECCSS----BCHHHHHHHHHHHCCSEEEEECCSG--GGTHHHHHHHHHHHHTTCGGGCEEEEESTT
T ss_pred HHHHHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEECCC
Confidence 344455668999887654 67788877664 5788888887543 35667888888888764 788887763
No 254
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=32.94 E-value=22 Score=37.08 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=28.1
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++++.||++|+.|++|.++.
T Consensus 74 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 105 (515)
T 1hvx_A 74 VRTKYGTKAQYLQAIQAAHAAGMQVYADVVFD 105 (515)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 34457999999999999999999999999964
No 255
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=32.72 E-value=3.3e+02 Score=25.90 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=45.3
Q ss_pred CeEEecCCccchHHHHHhhcCCeEEEeeC-CCCCccCHHHHHHhhc---cC-ceEEEeecCCCCCccccCHHHHHHHHHH
Q 009181 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DKEFRADVKAIKKYIN---RN-TVLIVGSAPGFPHGIIDPIQELGELALS 301 (541)
Q Consensus 227 ~~vi~~~~~h~s~~ka~~~~G~~v~~v~~-~~~~~~d~~~Le~~i~---~~-t~~vv~~~~~~~~G~id~i~~I~~la~~ 301 (541)
..+++ .|++|...++.+|++...+.- .++-...+.+|.+.++ ++ ..+|+.. ++.+ -+-+..++++
T Consensus 191 ~~~v~---~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e-~~~~------~~~~~~ia~e 260 (312)
T 2o1e_A 191 KEFIT---QHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFE-EIAS------SKVADTLASE 260 (312)
T ss_dssp CEEEE---SSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECS-SCCC------HHHHHHHHHH
T ss_pred CEEEE---ECCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe-CCCC------hHHHHHHHHH
Confidence 44555 589999999999999876642 3345667777766654 43 4555444 4332 2445556788
Q ss_pred cCCEEE
Q 009181 302 HGTCLH 307 (541)
Q Consensus 302 ~~i~lh 307 (541)
.|+.+.
T Consensus 261 ~g~~v~ 266 (312)
T 2o1e_A 261 IGAKTE 266 (312)
T ss_dssp TCCEEE
T ss_pred hCCcEE
Confidence 887763
No 256
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=32.18 E-value=39 Score=32.49 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=36.0
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ -.|++|...-..-.+.++.+|++++.++.+
T Consensus 71 v~assGN~g~alA~~a~~------~G~~-~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 71 LEPTSGNTGIALAMVCAA------RGYR-CVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCE-EEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEeCCCHHHHHHHHHHHH------cCCc-EEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 455667777776666653 3422 457888776666677888999999998864
No 257
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=32.17 E-value=2.7e+02 Score=24.71 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=66.2
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhc-CCeEEEeeCCC------CCccCHHHHHHhh
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-NIKLWRVPVDK------EFRADVKAIKKYI 270 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~-G~~v~~v~~~~------~~~~d~~~Le~~i 270 (541)
.|-.-|.+=....+..+.+++.. .|| +.|++.+..=.+-.++++.+ |++++.|..-. ...++.+..+++-
T Consensus 19 YF~~~G~eNT~~tl~la~era~e-~~I--k~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 95 (201)
T 1vp8_A 19 YFNKPGRENTEETLRLAVERAKE-LGI--KHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELR 95 (201)
T ss_dssp EESSCSGGGHHHHHHHHHHHHHH-HTC--CEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred EecCCCcccHHHHHHHHHHHHHH-cCC--CEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 55555555555555555554443 454 46777777666667777766 77888887532 4567888777777
Q ss_pred ccCceEEEeecCCCC--------CccccCHHHHHHHHH
Q 009181 271 NRNTVLIVGSAPGFP--------HGIIDPIQELGELAL 300 (541)
Q Consensus 271 ~~~t~~vv~~~~~~~--------~G~id~i~~I~~la~ 300 (541)
+....++..++.-.. .|-+.|.+-|++..+
T Consensus 96 ~~G~~V~t~tH~lsgveR~is~kfGG~~p~eiiA~tLR 133 (201)
T 1vp8_A 96 KRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALR 133 (201)
T ss_dssp HTTCEEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hCCCEEEEEeccccchhHHHHHhcCCCCHHHHHHHHHH
Confidence 777888888887433 445678888888777
No 258
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=32.02 E-value=23 Score=36.98 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=27.5
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 284 FPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 284 ~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
...|+.++++++++.||++|+.|++|.++.
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~N 116 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 668999999999999999999999998764
No 259
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=31.75 E-value=20 Score=36.91 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.3
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++++.||++|+.|++|.++.
T Consensus 90 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 90 LNENYGTADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp ECTTSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 34457999999999999999999999999874
No 260
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=30.96 E-value=23 Score=36.99 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=28.1
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
+...|+.++++++++.||++|+.|+.|.++..
T Consensus 73 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH 104 (549)
T 4aie_A 73 DPQYGTMADMDELISKAKEHHIKIVMDLVVNH 104 (549)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 33479999999999999999999999999743
No 261
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=30.44 E-value=97 Score=29.16 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=51.3
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhcc-----
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR----- 272 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~----- 272 (541)
++.+||+.++=.++.-... +.| -+|++..-.-....+.++-+|.++..+..|-. |.+++++++++
T Consensus 32 alVTGas~GIG~aiA~~la----~~G---a~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~---~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 32 AVITGATSGIGLAAAKRFV----AEG---ARVFITGRRKDVLDAAIAEIGGGAVGIQADSA---NLAELDRLYEKVKAEA 101 (273)
T ss_dssp EEEESCSSHHHHHHHHHHH----HTT---CEEEEEESCHHHHHHHHHHHCTTCEEEECCTT---CHHHHHHHHHHHHHHH
T ss_pred EEEeCcCCHHHHHHHHHHH----HCC---CEEEEEECCHHHHHHHHHHcCCCeEEEEecCC---CHHHHHHHHHHHHHHc
Confidence 5666666666555443221 256 56776655555566777777888888877643 56666665542
Q ss_pred -CceEEEeecCCCCCccccC
Q 009181 273 -NTVLIVGSAPGFPHGIIDP 291 (541)
Q Consensus 273 -~t~~vv~~~~~~~~G~id~ 291 (541)
+.-.++-+++.++.+.+.+
T Consensus 102 G~iDiLVNNAG~~~~~~~~~ 121 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGE 121 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTS
T ss_pred CCCCEEEECCCCCCCCChhh
Confidence 3456777777666666544
No 262
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=30.16 E-value=22 Score=35.74 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=27.1
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 284 FPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 284 ~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
...|+.++++++++.||++|+.|++|.++.
T Consensus 63 ~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 92 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHGKGVQAIADIVIN 92 (405)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 346999999999999999999999999964
No 263
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=30.09 E-value=23 Score=36.12 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
.+...|+.++++++++.||++|+.|++|.+..
T Consensus 76 i~~~~Gt~~~~~~lv~~~h~~Gi~vi~D~V~N 107 (449)
T 3dhu_A 76 INPEYGTLADFKALTDRAHELGMKVMLDIVYN 107 (449)
T ss_dssp CCGGGCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34457889999999999999999999999864
No 264
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=29.50 E-value=21 Score=36.17 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=28.3
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++.+.||++|+.|++|.++.
T Consensus 74 idp~~Gt~~d~~~lv~~ah~~Gi~vilD~V~N 105 (424)
T 2dh2_A 74 IDPNFGSKEDFDSLLQSAKKKSIRVILDLTPN 105 (424)
T ss_dssp ECGGGCCHHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34457999999999999999999999999874
No 265
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=29.30 E-value=51 Score=33.48 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=37.4
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ -.|++|+..-..-...++.+|++++.++.+
T Consensus 179 V~aSsGNhG~AlA~aAa~------~Gl~-~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~ 230 (430)
T 4aec_A 179 VEPTSGNTGIGLAFIAAS------RGYR-LILTMPASMSMERRVLLKAFGAELVLTDPA 230 (430)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCE-EEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEECCCHHHHHHHHHHHH------hCCE-EEEEEcCCCCHHHHHHHHHCCCEEEEECCC
Confidence 445667777777777654 3432 457888887667778889999999988753
No 266
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=29.19 E-value=46 Score=31.97 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=36.8
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ ..|++|...-..-...++.+|++++.++.+
T Consensus 66 v~~ssGN~g~a~A~~a~~------~G~~-~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 66 VDATSGNTGIALAYVAAA------RGYK-ITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp EESCCSHHHHHHHHHHHH------HTCC-EEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEeCCcHHHHHHHHHHHH------cCCc-EEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 455567777777766654 3432 467888876666777888999999998753
No 267
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=28.80 E-value=22 Score=36.71 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=28.0
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
+...|+.++++++++.||++|+.|++|.++..
T Consensus 75 dp~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 106 (488)
T 1wza_A 75 NPDYGTLEDFHKLVEAAHQRGIKVIIDLPINH 106 (488)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEECCCSB
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 33479999999999999999999999999743
No 268
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=28.45 E-value=3.4e+02 Score=24.76 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=56.7
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEE-----ecC---------CccchHHHHHhhcCCeEEEeeCCCCCccCH
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMI-----IPV---------SAHSAYDKAAQYFNIKLWRVPVDKEFRADV 263 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi-----~~~---------~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~ 263 (541)
+..|||-.|...+.++.. .| -+|+ .+. ..+....+.|+.+|+.+..+++.....--.
T Consensus 9 vl~SGGkDSs~al~~l~~------~G---~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~ 79 (237)
T 3rjz_A 9 VLYSGGKDSNYALYWAIK------NR---FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEV 79 (237)
T ss_dssp EECCSSHHHHHHHHHHHH------TT---CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------CH
T ss_pred EEecCcHHHHHHHHHHHH------cC---CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHH
Confidence 788999999888776653 34 2331 111 123457788999999998888764323346
Q ss_pred HHHHHhhccC-ceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEE
Q 009181 264 KAIKKYINRN-TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH 307 (541)
Q Consensus 264 ~~Le~~i~~~-t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lh 307 (541)
++|.+++.+- .-.++ +|.++. -..+-..|.+.|+..+
T Consensus 80 e~l~~~l~~~~i~~vv-------~Gdi~s~yqr~r~e~vc~~~gl~~~ 120 (237)
T 3rjz_A 80 EDLKRVLSGLKIQGIV-------AGALASKYQRKRIEKVAKELGLEVY 120 (237)
T ss_dssp HHHHHHHTTSCCSEEE-------CC---CCSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhcCCcEEE-------ECCcchHHHHHHHHHHHHHcCCEEE
Confidence 7888887652 22222 566642 4578888999887765
No 269
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=28.31 E-value=79 Score=30.12 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=36.1
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ -.|++|...-..-.+.++.+|++++.++.+
T Consensus 65 v~~ssGN~g~a~A~~a~~------~G~~-~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 65 IEATSGNTGIALAMIAAL------KGYR-MKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCE-EEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred EEECCcHHHHHHHHHHHH------cCCc-EEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 445557777766666653 3431 457888776666777889999999999864
No 270
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=27.89 E-value=23 Score=36.52 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=28.3
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++++.||++|+.|++|.++.
T Consensus 90 id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (484)
T 2aaa_A 90 VNSNFGTADNLKSLSDALHARGMYLMVDVVPD 121 (484)
T ss_dssp ECTTTCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 34457999999999999999999999999874
No 271
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=27.76 E-value=21 Score=36.72 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=28.1
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
.+...|+.++++++++.||++|+.|++|.++-
T Consensus 67 idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 98 (471)
T 1jae_A 67 INTRSGDESAFTDMTRRCNDAGVRIYVDAVIN 98 (471)
T ss_dssp SEETTEEHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 34457999999999999999999999999863
No 272
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=27.73 E-value=22 Score=36.58 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
++...|+.++++++++.||++|+.|++|.++..
T Consensus 89 idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH 121 (475)
T 2z1k_A 89 VDPILGGNEALRHLLEVAHAHGVRVILDGVFNH 121 (475)
T ss_dssp ECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 344579999999999999999999999998743
No 273
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=27.44 E-value=3.1e+02 Score=25.59 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=41.4
Q ss_pred CeEEecCCccchHHHHHhhcCCeEEEeeC-CCCCccCHHHHHHhh---cc-CceEEEeecCCCCCccccCHHHHHHHHHH
Q 009181 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DKEFRADVKAIKKYI---NR-NTVLIVGSAPGFPHGIIDPIQELGELALS 301 (541)
Q Consensus 227 ~~vi~~~~~h~s~~ka~~~~G~~v~~v~~-~~~~~~d~~~Le~~i---~~-~t~~vv~~~~~~~~G~id~i~~I~~la~~ 301 (541)
..+++ .|++|...++.+|++...+.- .++-...+.+|.+.+ ++ +..+|+.. ++.+. +-+..++++
T Consensus 178 ~~~v~---~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e-~~~~~------~~~~~ia~~ 247 (284)
T 3cx3_A 178 KTFVT---QHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTE-SNASS------KVAETLVKS 247 (284)
T ss_dssp CCEEE---EESCCHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEEC-SSSCC------HHHHHHHSS
T ss_pred CEEEE---ECCchHHHHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe-CCCCc------HHHHHHHHH
Confidence 44555 589999999999998776653 334445555555544 44 34454443 33321 233445666
Q ss_pred cCCEEE
Q 009181 302 HGTCLH 307 (541)
Q Consensus 302 ~~i~lh 307 (541)
.|+.+.
T Consensus 248 ~g~~v~ 253 (284)
T 3cx3_A 248 TGVGLK 253 (284)
T ss_dssp SSCCEE
T ss_pred cCCeEE
Confidence 776653
No 274
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=27.35 E-value=3.9e+02 Score=25.09 Aligned_cols=66 Identities=6% Similarity=0.068 Sum_probs=43.7
Q ss_pred ccchHHHHHhhcCCeEEEee-CCCCCccCHHHHHHhhc---c-CceEEEeecCCCCCccccCHHHHHHHHHHcCCEEE
Q 009181 235 AHSAYDKAAQYFNIKLWRVP-VDKEFRADVKAIKKYIN---R-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (541)
Q Consensus 235 ~h~s~~ka~~~~G~~v~~v~-~~~~~~~d~~~Le~~i~---~-~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lh 307 (541)
.|++|...++.+|++...+. +.++-...+.+|.+.++ + +..+|+.....++ +.+..++++.|+.+.
T Consensus 189 ~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 189 SEGCFKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDR-------RPMETVSKDSGIPIY 259 (294)
T ss_dssp EESCCHHHHHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEETTSCS-------HHHHHHHHHHCCCEE
T ss_pred ECChHHHHHHHcCCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HHHHHHHHHhCCcEE
Confidence 59999999999999887764 33445566666666554 3 4556655443221 345567888888775
No 275
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=27.28 E-value=2.5e+02 Score=22.86 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=29.2
Q ss_pred HHHHHhhc-cCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEE
Q 009181 264 KAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (541)
Q Consensus 264 ~~Le~~i~-~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhv 308 (541)
+.+..+++ .++.+++++.+. .|-+++.++|+++|++++.
T Consensus 64 ~~~l~a~~~~~~~~iIlt~g~------~~~~~i~~~A~~~~ipvl~ 103 (139)
T 2ioj_A 64 DLLLTALEMPNVRCLILTGNL------EPVQLVLTKAEERGVPVIL 103 (139)
T ss_dssp HHHHHHTTCTTEEEEEEETTC------CCCHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhCCCCcEEEEcCCC------CCCHHHHHHHHHCCCeEEE
Confidence 44456666 678888887664 3668888999999999875
No 276
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=27.24 E-value=1.8e+02 Score=25.61 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=35.7
Q ss_pred CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 452 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 452 ~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
....+..++.+.+.-+++...+..+|+.++..+.|.=.+++..++...+
T Consensus 74 ~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E 122 (185)
T 1is1_A 74 LTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAE 122 (185)
T ss_dssp THHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 5778888888887766666666799999998887665666665555443
No 277
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=27.14 E-value=60 Score=30.73 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=48.7
Q ss_pred eEEecCCccchHHHHHhhcCCeEEEee-CCCCCccCHHHHHHhhc----cCceEEEeecCCCCCccccCHHHHHHHHHHc
Q 009181 228 EMIIPVSAHSAYDKAAQYFNIKLWRVP-VDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSH 302 (541)
Q Consensus 228 ~vi~~~~~h~s~~ka~~~~G~~v~~v~-~~~~~~~d~~~Le~~i~----~~t~~vv~~~~~~~~G~id~i~~I~~la~~~ 302 (541)
+.++. .|++|...++.+|++...+. +.++-...+.+|.+.++ .+..+|+... +.+ -...+.|.++|++.
T Consensus 164 ~~~vt--~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~-~~~---~~~~~~l~~~a~~~ 237 (282)
T 3mfq_A 164 RYLVT--PHDAFNYFAASYDFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAIFTES-TTN---PERMKKLQEAVKAK 237 (282)
T ss_dssp CEEEC--SSSCCHHHHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEECBT-TSC---THHHHHHHHHHHTT
T ss_pred cEEEE--ECchHHHHHHHCCCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-CCC---hHHHHHHHHHHHhc
Confidence 44443 58999999999999987653 23344566777766654 3556665443 321 11267788889998
Q ss_pred CCEEEE
Q 009181 303 GTCLHV 308 (541)
Q Consensus 303 ~i~lhv 308 (541)
|+.+.+
T Consensus 238 g~~v~~ 243 (282)
T 3mfq_A 238 GGQVEV 243 (282)
T ss_dssp SCCCEE
T ss_pred CCceEE
Confidence 877654
No 278
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=26.99 E-value=26 Score=37.16 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=28.7
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcccc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~ 315 (541)
+...|+.++++++++.||++|+.|++|.++..+
T Consensus 216 dp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 248 (588)
T 1j0h_A 216 DPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHC 248 (588)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEECcCcC
Confidence 345799999999999999999999999997543
No 279
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=26.91 E-value=1.8e+02 Score=25.60 Aligned_cols=49 Identities=14% Similarity=0.075 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 452 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 452 ~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
....+..++.+.+.-+++...+..+|+.++..+.|.=.+++..++...+
T Consensus 74 ~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E 122 (185)
T 1ise_A 74 MSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAE 122 (185)
T ss_dssp GHHHHHHHHHTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4667788888887767666666799999999887666666666555444
No 280
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=26.73 E-value=2.3e+02 Score=27.73 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=34.5
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~ 255 (541)
+..++|..+..+|..+.+ .|++ -.|++|...-..-...++.+|++++.++-
T Consensus 97 v~aSsGN~g~alA~aa~~------~G~~-~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~ 147 (364)
T 4h27_A 97 VCSSSGNAGMAAAYAARQ------LGVP-ATIVVPGTTPALTIERLKNEGATVKVVGE 147 (364)
T ss_dssp EECCSSHHHHHHHHHHHH------HTCC-EEEEEETTSCHHHHHHHHTTTCEEEEECS
T ss_pred EEeCCChHHHHHHHHHHH------hCCc-eEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 445556666666666543 4432 46788887666667778889999988863
No 281
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=26.48 E-value=53 Score=31.97 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=36.3
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ -.|++|+..-..-...++.+|++++.++.+
T Consensus 76 v~aSsGN~g~alA~aa~~------~G~~-~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 76 VESSSGNTGVSLAHLGAI------RGYK-VIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCE-EEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEeCCCHHHHHHHHHHHH------hCCC-EEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344557777777766654 3432 457888876666777889999999999754
No 282
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=26.40 E-value=28 Score=36.71 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=28.6
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcccc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~ 315 (541)
+...|+.++++++++.||++|+.|++|.++...
T Consensus 73 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NHt 105 (557)
T 1zja_A 73 MKEYGTMEDFDRLMAELKKRGMRLMVDVVINHS 105 (557)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 345799999999999999999999999997543
No 283
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=26.40 E-value=1.8e+02 Score=25.62 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 452 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 452 ~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
....+..++.+.+.-+++...+..+|+.++..|.|.=.+++..++...+
T Consensus 74 ~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E 122 (185)
T 1wqg_A 74 QLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGE 122 (185)
T ss_dssp GHHHHHHHHHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4667888888887777766666789999998887655666665555443
No 284
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=26.36 E-value=39 Score=30.55 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=43.6
Q ss_pred chHHHHHhhcCCeEEEeeCCCCCc--cCHHHHHHhhccCceEEEeecCC--CCCc----cccCHHHHHHHHHHcCCEEEE
Q 009181 237 SAYDKAAQYFNIKLWRVPVDKEFR--ADVKAIKKYINRNTVLIVGSAPG--FPHG----IIDPIQELGELALSHGTCLHV 308 (541)
Q Consensus 237 ~s~~ka~~~~G~~v~~v~~~~~~~--~d~~~Le~~i~~~t~~vv~~~~~--~~~G----~id~i~~I~~la~~~~i~lhv 308 (541)
.....+++- .+.++.-|-+..+. +|.+.++.+.+.++.+=+-+.+- .+.| .+.+..++.++|++||+++++
T Consensus 87 ~~n~~a~~~-~vDII~Hp~~~~~~~~~~~~~a~~A~e~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivi 165 (212)
T 1v77_A 87 RVIRYSIEK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFL 165 (212)
T ss_dssp HHHHHHHHT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhC-CCCEEecccccccCCCCCHHHHHHHHHCCeEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 346667777 88887776654333 34444555555555443322221 1222 356777999999999988876
Q ss_pred eC
Q 009181 309 DL 310 (541)
Q Consensus 309 D~ 310 (541)
..
T Consensus 166 sS 167 (212)
T 1v77_A 166 TS 167 (212)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 285
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=26.03 E-value=1.4e+02 Score=28.68 Aligned_cols=52 Identities=6% Similarity=0.081 Sum_probs=34.6
Q ss_pred EEcC---cHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCc-cchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTS---GGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~---Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~-h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+++. +|..+..+|..+.+ .|++ ..|+++... -..-...++.+|++++.++-+
T Consensus 73 vv~~G~ssGN~g~alA~~a~~------~G~~-~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~ 128 (325)
T 1j0a_A 73 VITVGAVHSNHAFVTGLAAKK------LGLD-AILVLRGKEELKGNYLLDKIMGIETRVYDAK 128 (325)
T ss_dssp EEEECCTTCHHHHHHHHHHHH------TTCE-EEEEEESCCCSCHHHHHHHHTTCEEEEESCC
T ss_pred EEEcCCcchHHHHHHHHHHHH------hCCc-EEEEECCCCCCCchHHHHHHCCCEEEEeCcc
Confidence 5664 44555555544443 4432 467888877 666778889999999998764
No 286
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=25.93 E-value=29 Score=36.78 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=29.5
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcccc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~ 315 (541)
++...|+.++++++++.||++|+.|++|.++..+
T Consensus 211 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 244 (583)
T 1ea9_C 211 IDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS 244 (583)
T ss_dssp CCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBC
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEEccccC
Confidence 4455788999999999999999999999998644
No 287
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=25.22 E-value=23 Score=36.49 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=27.6
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+...|+.++++++++.||++|+.|++|.++.
T Consensus 96 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 126 (488)
T 2wc7_A 96 DPMLGGNEAFKELLDAAHQRNIKVVLDGVFN 126 (488)
T ss_dssp CGGGTHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3457999999999999999999999999874
No 288
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=24.87 E-value=44 Score=27.89 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=29.0
Q ss_pred HHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 266 IKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 266 Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+++++......+++..+.. -+++.++|+++|+.++-+.|.|
T Consensus 87 ~~~~~~~gi~~i~~~~g~~-------~~~~~~~a~~~Gir~vgpnc~g 127 (140)
T 1iuk_A 87 LPEVLALRPGLVWLQSGIR-------HPEFEKALKEAGIPVVADRCLM 127 (140)
T ss_dssp HHHHHHHCCSCEEECTTCC-------CHHHHHHHHHTTCCEEESCCHH
T ss_pred HHHHHHcCCCEEEEcCCcC-------HHHHHHHHHHcCCEEEcCCccc
Confidence 4444444555555554332 3899999999999999999976
No 289
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=24.86 E-value=28 Score=36.95 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.0
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcccc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~ 315 (541)
++...|+.++++++++.||++|+.|++|.++..+
T Consensus 212 id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~ 245 (585)
T 1wzl_A 212 IDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585)
T ss_dssp ECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 3445789999999999999999999999997543
No 290
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=24.56 E-value=42 Score=32.15 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=36.0
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ ..|++|...-..-.+.++.+|++++.++.+
T Consensus 69 v~assGN~g~a~A~~a~~------~G~~-~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 69 VEPTSGNTGIGLAMVAAA------KGYK-AVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp EEECCHHHHHHHHHHHHH------HTCE-EEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEeCCCHHHHHHHHHHHH------cCCC-EEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 445667777776666654 3321 457888776566677888999999998754
No 291
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=24.40 E-value=27 Score=36.93 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=28.0
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
+...|+.++++++++.||++|+.|++|.++..
T Consensus 86 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH 117 (570)
T 1m53_A 86 MKEYGTMEDFDSLVAEMKKRNMRLMIDVVINH 117 (570)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 33479999999999999999999999999754
No 292
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=24.34 E-value=1.8e+02 Score=25.62 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhCCceeccCCCCCeEEEEecCCCHHHHHHHHHHHHHHHH
Q 009181 452 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFLRDLRESVE 500 (541)
Q Consensus 452 ~~~~l~~~l~~~G~~~~~~~~~~~iRi~~~~~~~e~id~~i~~L~~~~~ 500 (541)
....+..++.+.+.-+++...+..+|+.++..+.|.=.+++..++...+
T Consensus 74 ~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E 122 (185)
T 1dd5_A 74 VLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVE 122 (185)
T ss_dssp HHHHHHHHHHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4667788888887777766666789999999887666666666555443
No 293
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=24.33 E-value=34 Score=37.04 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+...|+.++++++++.||++|+.|++|.++-
T Consensus 109 dp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~N 139 (686)
T 1d3c_A 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPN 139 (686)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCcC
Confidence 4457999999999999999999999999964
No 294
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A
Probab=24.09 E-value=37 Score=36.15 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=27.6
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+...|+.++++++++.||++|+.|++|.++-
T Consensus 202 dp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~N 232 (599)
T 3bc9_A 202 RTKYGTKGELENAIDALHNNDIKVYFDAVLN 232 (599)
T ss_dssp SBTTBCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 3457999999999999999999999999964
No 295
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=24.08 E-value=35 Score=36.98 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=27.9
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+...|+.++++++++.||++|+.|++|.++-
T Consensus 101 dp~~Gt~~df~~Lv~~aH~~GikVilD~V~N 131 (686)
T 1qho_A 101 EEHFGNWTTFDTLVNDAHQNGIKVIVDFVPN 131 (686)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 3457999999999999999999999999974
No 296
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.91 E-value=1.9e+02 Score=27.07 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=41.3
Q ss_pred HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEE
Q 009181 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhv 308 (541)
+.++++..|.++.....+.+..-..+.++..+..++-.|++..... .......+.+++.|++++.
T Consensus 25 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~-----~~~~~~~~~~~~~giPvV~ 89 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG-----TTLSDVLKQAGEQGIKVIA 89 (330)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG-----GGGHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc-----hhHHHHHHHHHHCCCCEEE
Confidence 4556666788887776543333334566777777777777654331 2355667778888998763
No 297
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=23.73 E-value=1.9e+02 Score=23.30 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCeEEEeeCCCCCccCHHHHHHhhccC-----------ceEEEeecCCCCCccccCHHHHHHHHHHcCCEEE-EeCC
Q 009181 247 NIKLWRVPVDKEFRADVKAIKKYINRN-----------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH-VDLC 311 (541)
Q Consensus 247 G~~v~~v~~~~~~~~d~~~Le~~i~~~-----------t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lh-vD~a 311 (541)
++.+..++.. |++++.+.++++ +.++-++.-. ...++.+|.++++++|+.++ |-++
T Consensus 16 ~l~vl~l~~~-----d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~vGV~g~ 83 (120)
T 3ghf_A 16 TLSVVHLHEA-----EPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRIIGVSGC 83 (120)
T ss_dssp CCEEEEEESC-----CHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEEEEESC
T ss_pred eEEEEEeCCC-----CHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3444555433 666666665431 4444444332 23579999999999998764 5554
No 298
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=23.61 E-value=2.1e+02 Score=27.52 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=31.9
Q ss_pred EEcCcHH---HHHHHHHHHHHHHHHhhcCCCCCeEEecCCcc-----------chHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGT---ESILLAVKSSRDYMRNKRGITRPEMIIPVSAH-----------SAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt---~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h-----------~s~~ka~~~~G~~v~~v~~~ 256 (541)
+++.|+| .+..+|..+.+ .|++ ..|+++...- ..-...++.+|++++.++.+
T Consensus 70 vv~~G~ssGN~g~alA~~a~~------~G~~-~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~ 135 (341)
T 1f2d_A 70 LVSIGGRQSNQTRMVAALAAK------LGKK-CVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDG 135 (341)
T ss_dssp EEEEEETTCHHHHHHHHHHHH------HTCE-EEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCC
T ss_pred EEEcCCcchHHHHHHHHHHHH------hCCc-eEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCc
Confidence 5664444 44444444443 3432 4577776553 22677889999999998854
No 299
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=23.58 E-value=2.2e+02 Score=26.05 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=40.0
Q ss_pred HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEE
Q 009181 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhv 308 (541)
+.++++..|.++.....+.+..-..+.++.++..+.-.+++.... .+.+.++.+.+++.++++++
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~-----~~~~~~~~~~~~~~~iPvV~ 94 (293)
T 3l6u_A 30 FKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLD-----DVYIGSAIEEAKKAGIPVFA 94 (293)
T ss_dssp HHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSC-----TTTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC-----hHHHHHHHHHHHHcCCCEEE
Confidence 455566678888887765433333455666666777776665432 12345666677778887663
No 300
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=23.52 E-value=2.3e+02 Score=25.80 Aligned_cols=80 Identities=3% Similarity=-0.003 Sum_probs=47.3
Q ss_pred EEecCCccch-------HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHH
Q 009181 229 MIIPVSAHSA-------YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS 301 (541)
Q Consensus 229 vi~~~~~h~s-------~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~ 301 (541)
++++...++- +.++++..|.++.....+.+..-..+.++..+..+...+++..... ...++..+..+.+++
T Consensus 20 vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~~~~~~~~~~ 97 (298)
T 3tb6_A 20 VLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKS--ALQTPNIGYYLNLEK 97 (298)
T ss_dssp EEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSST--TSCCTTHHHHHHHHH
T ss_pred EEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccc--cccCCcHHHHHHHHh
Confidence 4666655443 4556667798888877654332234455666667777777654432 122344556666777
Q ss_pred cCCEEE-EeC
Q 009181 302 HGTCLH-VDL 310 (541)
Q Consensus 302 ~~i~lh-vD~ 310 (541)
.+++++ +|.
T Consensus 98 ~~iPvV~~~~ 107 (298)
T 3tb6_A 98 NGIPFAMINA 107 (298)
T ss_dssp TTCCEEEESS
T ss_pred cCCCEEEEec
Confidence 888876 444
No 301
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=23.50 E-value=24 Score=35.65 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=26.7
Q ss_pred CCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 285 PHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 285 ~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
..|+.++++++++.||++|+.|++|.++.
T Consensus 70 ~~G~~~d~~~lv~~~h~~Gi~VilD~V~N 98 (422)
T 1ua7_A 70 YLGTEQEFKEMCAAAEEYGIKVIVDAVIN 98 (422)
T ss_dssp TTEEHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 46999999999999999999999999874
No 302
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=23.34 E-value=34 Score=36.42 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+...|+.++++++++.||++|+.|++|.++-
T Consensus 192 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 222 (601)
T 3edf_A 192 DPRYGSNEDFVRLSTEARKRGMGLIQDVVLS 222 (601)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEEECCc
Confidence 3347999999999999999999999999963
No 303
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=23.15 E-value=34 Score=37.04 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=27.6
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+...|+.++++++++.||++|+.|++|.++-
T Consensus 105 dp~~Gt~~df~~Lv~~aH~~GIkVilD~V~N 135 (680)
T 1cyg_A 105 NPFFGTLSDFQRLVDAAHAKGIKVIIDFAPN 135 (680)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3457999999999999999999999999863
No 304
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=23.11 E-value=39 Score=36.24 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=28.0
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
++...|+.++++++++-||++|+.|++|.++.
T Consensus 155 vdp~~Gt~~d~~~Lv~~ah~~GI~VilD~V~N 186 (628)
T 1g5a_A 155 VNPALGTIGDLREVIAALHEAGISAVVDFIFN 186 (628)
T ss_dssp BCTTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 34457899999999999999999999999874
No 305
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=23.08 E-value=30 Score=36.48 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=27.6
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 284 FPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 284 ~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
...|+.++++++++.||++|+.|++|.++..
T Consensus 73 ~~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH 103 (558)
T 1uok_A 73 NEFGTMEDWDELLHEMHERNMKLMMDLVVNH 103 (558)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 3479999999999999999999999998743
No 306
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=22.93 E-value=38 Score=36.66 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=27.7
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
+...|+.++++++++.||++|+.|++|.++-
T Consensus 110 dp~~Gt~~dfk~Lv~~aH~~GikVilD~V~N 140 (683)
T 3bmv_A 110 NPYFGSFTDFQNLINTAHAHNIKVIIDFAPN 140 (683)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 3457999999999999999999999999964
No 307
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=22.34 E-value=31 Score=36.76 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=28.5
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
++...|+.++++++++.||++|+.|+.|.++..
T Consensus 185 ~~~~~Gt~~d~~~lv~~~H~~Gi~VilD~V~NH 217 (602)
T 2bhu_A 185 PYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNH 217 (602)
T ss_dssp ECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred cCcCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 444578999999999999999999999998743
No 308
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=22.31 E-value=25 Score=38.44 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=25.4
Q ss_pred CccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 286 HGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 286 ~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
.|+.++++++++.||++|+.|+.|.++..
T Consensus 312 ~~~~~dfk~LV~~aH~~GI~VIlDvV~NH 340 (718)
T 2e8y_A 312 QTRKTELKQMINTLHQHGLRVILDVVFNH 340 (718)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred cccHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 34678999999999999999999999753
No 309
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=22.31 E-value=92 Score=25.98 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 263 VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 263 ~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
.+.+++++......+++..+ .. -+++.++|+++|+.++-+.|.|
T Consensus 91 ~~vv~~~~~~gi~~i~~~~g-----~~--~~~l~~~a~~~Gi~vvGpnc~g 134 (144)
T 2d59_A 91 MEYVEQAIKKGAKVVWFQYN-----TY--NREASKKADEAGLIIVANRCMM 134 (144)
T ss_dssp HHHHHHHHHHTCSEEEECTT-----CC--CHHHHHHHHHTTCEEEESCCHH
T ss_pred HHHHHHHHHcCCCEEEECCC-----ch--HHHHHHHHHHcCCEEEcCCchh
Confidence 44455566555656655432 22 5899999999999999899975
No 310
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=22.29 E-value=37 Score=36.06 Aligned_cols=32 Identities=19% Similarity=0.067 Sum_probs=28.1
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeCCcccc
Q 009181 284 FPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (541)
Q Consensus 284 ~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~ 315 (541)
...|+.++++++++.||++|+.|++|.++...
T Consensus 82 ~~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~ 113 (589)
T 3aj7_A 82 PTYGTNEDCFALIEKTHKLGMKFITDLVINHC 113 (589)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 44799999999999999999999999997543
No 311
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=22.27 E-value=31 Score=37.07 Aligned_cols=33 Identities=9% Similarity=-0.156 Sum_probs=28.7
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
++...|+.++++++++.||+.|+.|+.|.++..
T Consensus 278 idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH 310 (645)
T 4aef_A 278 VARRLGGDRAFVDLLSELKRFDIKVILDGVFHH 310 (645)
T ss_dssp ECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred cCcccCCHHHHHHHHHHhhhcCCEEEEEecccc
Confidence 344579999999999999999999999998753
No 312
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=21.86 E-value=30 Score=36.36 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=27.0
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 284 FPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 284 ~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
...|+.++++++++.||++|+.|++|.++.
T Consensus 73 p~~Gt~~df~~lv~~~h~~Gi~VilD~V~N 102 (543)
T 2zic_A 73 DIFGNMADMDNLLTQAKMRGIKIIMDLVVN 102 (543)
T ss_dssp GGGCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 357899999999999999999999999874
No 313
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=21.13 E-value=31 Score=36.32 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=28.9
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 281 APGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 281 ~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
.++...|+.++++++++.||++|+.|++|.++.
T Consensus 159 ~~~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 191 (558)
T 3vgf_A 159 AVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYN 191 (558)
T ss_dssp EECGGGTHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccccccCCHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 345568999999999999999999999999874
No 314
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=21.04 E-value=31 Score=36.31 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=27.8
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
+...|+.++++++++.||++|+.|++|.+...
T Consensus 72 d~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 103 (555)
T 2ze0_A 72 MDEFGTMDDFDELLAQAHRRGLKVILDLVINH 103 (555)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEEEECSB
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 34578999999999999999999999998743
No 315
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=21.00 E-value=34 Score=36.53 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=28.6
Q ss_pred CCCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 282 ~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
++...|+.++++++++.||++|+.|++|.++..
T Consensus 197 ~~~~~Gt~~~~~~lv~~~H~~Gi~VilD~V~NH 229 (617)
T 1m7x_A 197 PTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGH 229 (617)
T ss_dssp ECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 344578999999999999999999999999753
No 316
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Probab=21.00 E-value=49 Score=35.93 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=27.8
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCEEEEeCCcc
Q 009181 281 APGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (541)
Q Consensus 281 ~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~g 313 (541)
.++...|+.++++++++.||++|+.|++|.++.
T Consensus 312 ~idp~~Gt~edfk~LV~~aH~~GI~VilD~V~N 344 (695)
T 3zss_A 312 SIHPALGTLDDFDHFVTEAGKLGLEIALDFALQ 344 (695)
T ss_dssp SCCTTTCCHHHHHHHHHHHHHTTCEEEEEECCE
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEEEEeecc
Confidence 344456888889999999999999999999864
No 317
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=20.92 E-value=41 Score=35.98 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=29.4
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 281 APGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 281 ~~~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
.++...|+.++++++++.||++|+.|++|.++..
T Consensus 194 ~~~~~~G~~~~~~~lv~~~H~~Gi~VilD~V~NH 227 (618)
T 3m07_A 194 APHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNH 227 (618)
T ss_dssp EECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred ccCcCcCCHHHHHHHHHHHHHCCCEEEEeecCcc
Confidence 3455689999999999999999999999998753
No 318
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=20.88 E-value=39 Score=36.35 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=27.7
Q ss_pred CCCCccccCHHHHHHHHHHcCCEEEEeCCccc
Q 009181 283 GFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (541)
Q Consensus 283 ~~~~G~id~i~~I~~la~~~~i~lhvD~a~gg 314 (541)
+...|+.++++++++.||++|+.|++|.++..
T Consensus 149 dp~~Gt~~df~~Lv~~aH~~GI~VilD~V~NH 180 (644)
T 3czg_A 149 EPSLGSNDDLVALTSRLREAGISLCADFVLNH 180 (644)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEecCC
Confidence 34468889999999999999999999998743
No 319
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=20.73 E-value=97 Score=29.74 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=35.3
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~ 256 (541)
+..++|..+..+|..+.+ .|++ ..|++|...-..-...++.+|++++.++.+
T Consensus 71 v~assGN~g~alA~aa~~------~G~~-~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 71 IEPTSGNTGVGLAFTAAA------KGYK-LIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCE-EEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEeCCCHHHHHHHHHHHH------cCCC-EEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344556777777666654 3432 457888776666777888999999988753
No 320
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=20.62 E-value=4.1e+02 Score=22.83 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=31.0
Q ss_pred HHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEE
Q 009181 263 VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (541)
Q Consensus 263 ~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lh 307 (541)
.+.+...++++..+|+++. .|.-.++-++++.|++.|+.++
T Consensus 104 ~~~~~~~~~~~DvvI~iS~----SG~t~~~i~~~~~ak~~g~~vI 144 (199)
T 1x92_A 104 SKQIRALGQPGDVLLAIST----SGNSANVIQAIQAAHDREMLVV 144 (199)
T ss_dssp HHHHHHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhCCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEE
Confidence 3445566788888888877 4767778889999999997765
No 321
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=20.49 E-value=1.7e+02 Score=30.22 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=38.5
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCCC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK 257 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~ 257 (541)
+..++|..+..+|..+.+ .|++ ..|++|...-..-...++.+|++++.++.+.
T Consensus 117 v~~ssGN~g~a~A~~a~~------~G~~-~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~ 169 (527)
T 3pc3_A 117 IEPTSGNTGIGLAMACAV------KGYK-CIIVMPEKMSNEKVSALRTLGAKIIRTPTEA 169 (527)
T ss_dssp EEECSSHHHHHHHHHHHH------HTCE-EEEEEETTSCHHHHHHHHHTTCEEEEECTTS
T ss_pred EEeCCCHHHHHHHHHHHH------hCCe-EEEEEcCCCCHHHHHHHHHCCCEEEEeCCCC
Confidence 556667788777776654 3432 4578888776667788899999999998653
No 322
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.39 E-value=2.6e+02 Score=25.88 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=40.9
Q ss_pred HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccCceEEEeecCCCCCccccCHHHHHHHHHHcCCEEEE
Q 009181 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (541)
Q Consensus 239 ~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~t~~vv~~~~~~~~G~id~i~~I~~la~~~~i~lhv 308 (541)
+.++++..|.++.....+.+..-..+.++.++..+.-.+++..... +.+.+..+.+++.|++++.
T Consensus 24 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-----~~~~~~~~~~~~~~iPvV~ 88 (313)
T 3m9w_A 24 FVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG-----QVLSNVVKEAKQEGIKVLA 88 (313)
T ss_dssp HHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSST-----TSCHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-----hhhHHHHHHHHHCCCeEEE
Confidence 5566677788888776643332234556666677777776655432 2345666777888988764
No 323
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=20.38 E-value=40 Score=36.71 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=26.5
Q ss_pred CCCccccCHHHHHHHHHHcCCEEEEeCCcccc
Q 009181 284 FPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (541)
Q Consensus 284 ~~~G~id~i~~I~~la~~~~i~lhvD~a~gg~ 315 (541)
.+++..++++++++.||++||.|++|.++...
T Consensus 249 ~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~ 280 (714)
T 2ya0_A 249 NPEKRIAEFKNLINEIHKRGMGAILDVVYNHT 280 (714)
T ss_dssp STTHHHHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred CccchHHHHHHHHHHHHHCCCEEEEEeccCcc
Confidence 34445788999999999999999999997533
No 324
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=20.36 E-value=2.9e+02 Score=25.31 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=45.0
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccchHHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhcc-----
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR----- 272 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~s~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~----- 272 (541)
++.+||+..+=.++.-.. . +.| -+|++...........++..|.++..+..|-. |.+++++++++
T Consensus 30 vlVTGas~gIG~aia~~l--a--~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~ 99 (266)
T 3grp_A 30 ALVTGATGGIGEAIARCF--H--AQG---AIVGLHGTREDKLKEIAADLGKDVFVFSANLS---DRKSIKQLAEVAEREM 99 (266)
T ss_dssp EEESSTTSHHHHHHHHHH--H--HTT---CEEEEEESCHHHHHHHHHHHCSSEEEEECCTT---SHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHH--H--HCC---CEEEEEeCCHHHHHHHHHHhCCceEEEEeecC---CHHHHHHHHHHHHHHc
Confidence 566666666554443221 1 255 56766554444455566666778888877632 66666666542
Q ss_pred -CceEEEeecCCCCCcccc
Q 009181 273 -NTVLIVGSAPGFPHGIID 290 (541)
Q Consensus 273 -~t~~vv~~~~~~~~G~id 290 (541)
+.-.++-+++....+.+.
T Consensus 100 g~iD~lvnnAg~~~~~~~~ 118 (266)
T 3grp_A 100 EGIDILVNNAGITRDGLFV 118 (266)
T ss_dssp TSCCEEEECCCCC-----C
T ss_pred CCCCEEEECCCCCCCCCcc
Confidence 455677777665555443
No 325
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=20.29 E-value=3.3e+02 Score=26.12 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=58.4
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhhcCCCCCeEEecCCccc--h--HHHHHhhcCCeEEEeeCCCCCccCHHHHHHhhccC
Q 009181 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS--A--YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN 273 (541)
Q Consensus 198 ~~t~Ggt~a~~~al~a~r~~~~~~~Gi~~~~vi~~~~~h~--s--~~ka~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~ 273 (541)
++|.|.+......++.+.+ .|. +-+|++.++--. . +.+.....|+.+..|+-. ++-..+.+-
T Consensus 125 ILTh~~S~tv~~~l~~A~~-----~gk-~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Ds--------a~~~~m~~v 190 (315)
T 3ecs_A 125 ILTHAYSRVVLRVLEAAVA-----AKK-RFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA--------AVGYIMEKA 190 (315)
T ss_dssp EEECSCCHHHHHHHHHHHT-----TTC-CEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGG--------GHHHHGGGC
T ss_pred EEEcCCcHHHHHHHHHHHH-----cCC-eEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehh--------HHHHHHHhC
Confidence 7888877666666655532 231 136777765321 1 223334458888877632 222233444
Q ss_pred ceEEEeecCCCCCccccC---HHHHHHHHHHcCCEEEEeCC
Q 009181 274 TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLC 311 (541)
Q Consensus 274 t~~vv~~~~~~~~G~id~---i~~I~~la~~~~i~lhvD~a 311 (541)
.+++++...-...|.+.+ --.++-+|+.+|++++|=+-
T Consensus 191 d~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 191 DLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp SEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred CEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEec
Confidence 566666655455565543 35788899999999998443
Done!