RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009181
(541 letters)
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 525 bits (1353), Expect = 0.0
Identities = 219/485 (45%), Positives = 320/485 (65%), Gaps = 18/485 (3%)
Query: 65 SSIKLVPGVNKYIEAEKQKVVD---KMQSGVKSKREGW--WTELPRAGLGV-GVIEKLKE 118
+ G+ A + +D ++S +K R+ + LPRAGL ++ ++
Sbjct: 28 QDYCEIRGIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAA 87
Query: 119 EKGKDVVW--QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV 176
+ G SG VY G + +NE ++ + +NPLH D++ S A+FEAEV
Sbjct: 88 MGAAESPAWRDGYASGAVYHGDEHHI---AFLNEVYALQSQSNPLHPDLWPSTAKFEAEV 144
Query: 177 IAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH 236
+AMTA +LG +GG VCG +TSGGTES+LLA+K+ RD+ R +GIT PE ++PVSAH
Sbjct: 145 VAMTAHMLGGDA--AGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAH 202
Query: 237 SAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELG 296
+A+DKAAQYF IKL R P+D ++RADV A+++ I NTV++ GSAPG+PHG++DPI E+
Sbjct: 203 AAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIA 262
Query: 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSV 356
LA HG HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D HKYG KGTSV
Sbjct: 263 ALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSV 322
Query: 357 VLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAI 416
+LYR ++ +Q+ +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I
Sbjct: 323 ILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRI 382
Query: 417 MEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSI 476
++ ++ ++ G++ IP L I+G P + ++A SD ++I++V + M+ +GW LN L RP +
Sbjct: 383 LQAADRLKAGVRAIPSLKILGDP-LWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAF 441
Query: 477 HICVTLQHV--AVVDVFLRDLRESVETVKQNPGPANGSLAPIYGAAGRMPDRGMVNELLV 534
H+ +TL+H VVD FL DL+++V V+ +P A G AP+YG A P +V ++L
Sbjct: 442 HVALTLRHTEPGVVDRFLADLQDAVAQVRAHPEKATGM-APVYGMAAAAPPE-LVRQVLT 499
Query: 535 NYMDS 539
++D
Sbjct: 500 GFIDL 504
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 520 bits (1341), Expect = 0.0
Identities = 195/481 (40%), Positives = 291/481 (60%), Gaps = 18/481 (3%)
Query: 70 VPGVNKYIEAEKQKVVDKMQSGVKSKREGW--WTELPRAGLGV-GVIEKLKEEKG--KDV 124
P + +E E KV ++ + + +LP G+ VIE+L +
Sbjct: 3 SPFLRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHT 62
Query: 125 VW-QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
W +GK SG VY GG + L A + N LH D+F +V + E+EV++M +
Sbjct: 63 QWKEGKVSGAVYHGGDDLI---HLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRM 119
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
A CG TSGGTES+LLA S++ Y + RGIT PE+I PV+AH+ +DKAA
Sbjct: 120 FN----APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAA 175
Query: 244 QYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH 302
YF +KL V +D ++ D+ +KK+IN+NTVL+VGSAP FPHGI D I+ LG++A +
Sbjct: 176 YYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKY 235
Query: 303 GTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN 361
LHVD CLG F++ F +K GY +P DF V GVTSIS D HKYG APKG+SV++YRN
Sbjct: 236 KLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN 295
Query: 362 REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSE 421
++R HQ+ W+GGLY SPT+AGSRPG ++ G WA ++++G+ GY+E+ + I+ +
Sbjct: 296 SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAM 355
Query: 422 SIQKGIKE-IPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICV 480
+K I+E IP+L I+G P ++++F S ++I E++D +S KGWH N LQ+P ++H+
Sbjct: 356 KFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAF 415
Query: 481 TLQHVAVVDVFLRDLRESVETVKQNPG--PANGSLAPIYGAAGRMPDRGMVNELLVNYMD 538
T VVD LR +V+ +K P+ + +YG AG + G+ ++L+V ++D
Sbjct: 416 TRLSAHVVDEICDILRTTVQELKSESNSKPSPDGTSALYGVAGSVKTAGVADKLIVGFLD 475
Query: 539 S 539
+
Sbjct: 476 A 476
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 444 bits (1145), Expect = e-154
Identities = 103/411 (25%), Positives = 191/411 (46%), Gaps = 32/411 (7%)
Query: 103 LPRAGLGV-GVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNP 160
+ G+ ++E+LK+ + D+ ++ G G++ + + +F TN
Sbjct: 5 MQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMC------SNVLPITRKIVDIFLETNL 58
Query: 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN 220
+F+ E + +A+ +LL NK+ G++ SGGTE+ L+A++ ++ R
Sbjct: 59 GDPGLFKGTKLLEEKAVALLGSLLNNKD------AYGHIVSGGTEANLMALRCIKNIWRE 112
Query: 221 KR-----GITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTV 275
KR P++I+P++AH +++K + +++ P+ +++ D K +K + V
Sbjct: 113 KRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDV 172
Query: 276 L-IVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK---KLGYPIPPFD 331
I+G A G ID I+EL ++A + +HVD GG V+PF K FD
Sbjct: 173 DGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD 232
Query: 332 FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391
FS+ GV SI++D HK G P + +L+++ +++ V + T+ G+R G
Sbjct: 233 FSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTET--RQATILGTRVG 289
Query: 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVV 451
A +A L LG+EG + ME + + K +KE + P + IVA +
Sbjct: 290 FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDE-- 346
Query: 452 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV--AVVDVFLRDLRESVE 500
D EV + +G +++ ++ I V H+ +D F+ L
Sbjct: 347 DYKEVCKKLRDRGIYVSVCNCVKALRIVVM-PHIKREHIDNFIEILNSIKR 396
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 415 bits (1068), Expect = e-141
Identities = 93/482 (19%), Positives = 190/482 (39%), Gaps = 35/482 (7%)
Query: 73 VNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGV-GVIEKLKEEKGKDVVWQGKCS 131
V + +E V + + ++P + + + +E D + +
Sbjct: 2 VLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLA 61
Query: 132 GTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKAS 191
V ++ + N + +D + + + M A L +
Sbjct: 62 SFVTTWMEP------ECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLE-E 114
Query: 192 GGQVCGNMTSGGTESILLAVKSSRDYMRNKR-----GITRPEMIIPVSAHSAYDKAAQYF 246
G T G +E+I+LA + + +NKR + +P ++ + ++K A+YF
Sbjct: 115 AETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF 174
Query: 247 NIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG-- 303
++L V + + + D + ++ NT+ + +G + ++ L +L +
Sbjct: 175 EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKE 234
Query: 304 ----TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLY 359
T +HVD GGF+ PF YP +DF + V SI+V HKYGL G V++
Sbjct: 235 TGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290
Query: 360 RNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEV 419
RN+E + + + G + T+ S+ + + L+ LG EGY + E
Sbjct: 291 RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCREN 350
Query: 420 SESIQKGIKEIPELFIIGRP-DMTIVAF---GSDVVDIFEVNDIMSSKGWHLNPLQR-PN 474
+++G+++ I+ + + +VAF S FE++D++ GW + PN
Sbjct: 351 MIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPN 410
Query: 475 SIHICVTLQHV------AVVDVFLRDLRESVETVKQNPGPANGSLAPIYGAAGRMPDRGM 528
+ HI V + + + + D+ + + + + P ++ + D M
Sbjct: 411 AQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLM 470
Query: 529 VN 530
V
Sbjct: 471 VT 472
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 400 bits (1028), Expect = e-135
Identities = 86/436 (19%), Positives = 168/436 (38%), Gaps = 39/436 (8%)
Query: 101 TELPRAGLGVGVI-EKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159
P + V + + +E D + + E +++ + + N
Sbjct: 16 KRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDE------NVHKLMDLSINKN 69
Query: 160 PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR 219
+ + + A + + M A L + GQ G T G +E+ +L + + R
Sbjct: 70 WIDKEEYPQSAAIDLRCVNMVADLW-HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWR 128
Query: 220 NKR----GITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNT 274
+ T ++ + K A+Y++++L +P+ D K + + + NT
Sbjct: 129 KRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENT 188
Query: 275 VLIVGSAPGFPHGIIDPIQELG------ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328
+ +V + G + Q L + +H+D GGF+ PF P
Sbjct: 189 IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV----APDI 244
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
+DF + V SIS HK+GLAP G V++R+ E + V ++ GG + + S
Sbjct: 245 VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 304
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIP--ELFIIGRPDMTIVAF 446
RP G + + + LG+EGY + A +V+ + I ++ E GRPD I A
Sbjct: 305 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAV 364
Query: 447 GS-------DVVDIFEVNDIMSSKGWHLNPLQRP-NSIHICVTLQHV------AVVDVFL 492
++++++ + +GW + + I V ++ L
Sbjct: 365 CFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLL 424
Query: 493 RDLRESVETVKQNPGP 508
D + S++ + +P
Sbjct: 425 EDYKASLKYLSDHPKL 440
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 261 bits (668), Expect = 1e-81
Identities = 75/478 (15%), Positives = 148/478 (30%), Gaps = 77/478 (16%)
Query: 66 SIKLVPGVNKYIEAEKQKVVDK--MQSGVKSKREGW--------WTELPRAGLGVGVIEK 115
S LVP + ++ + ++ K + G E ++P G+ I+
Sbjct: 11 SSGLVPRGSHMLDFNIEGLIPKNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKL 70
Query: 116 -LKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAH-------TNPLHLDIFQ 167
LK D K +V IG EA + + E S F H
Sbjct: 71 FLKFLSMMD---TDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASG 127
Query: 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227
+ + A + + G V T T + S+ +
Sbjct: 128 A-SIMYALTNKILESFFKQ----LGLNVHAIATPISTGMSISLCLSAARKKYGSNVV--- 179
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPV---DKEFRADVKAIKKYINR-----NTVLIVG 279
I P ++H + KA + + + V V+ I+ I + N ++
Sbjct: 180 --IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 237
Query: 280 SAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTS 339
+ FP D I E+ ++ ++ ++ G + + L F + V V S
Sbjct: 238 TLTFFPPRNSDDIVEIAKICENYDIPHIIN---GAYAIQNNYYLEKLKKAFKYRVDAVVS 294
Query: 340 ISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399
K L P G +V + E K + G +P V
Sbjct: 295 ---SSDKNLLTPIGGGLVYSTDAEFIKEIS---LSYPGRASATPVVN----------TLV 338
Query: 400 ALMSLGQEGYLENTKAIMEVSESIQKGIKEIPE-----LFIIGRPDMTIVAFGSDVVDI- 453
+L+S+G + YLE K + + + + ++ + + P + ++ SD V+I
Sbjct: 339 SLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIA 398
Query: 454 ---FEVNDIMSSKGWHLNP----LQRPNSIHICVTL-----QHVAVVDVFLRDLRESV 499
+ + + +G H + + + + L + +
Sbjct: 399 AKLYNLR-VTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 103 bits (259), Expect = 8e-24
Identities = 58/304 (19%), Positives = 115/304 (37%), Gaps = 46/304 (15%)
Query: 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG--------- 223
E +V+ EKA G TSGGT+S + + +RD++ +K
Sbjct: 142 EQKVVNWLCDKYDLSEKADG-----IFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGL 196
Query: 224 -ITRPEMIIPVS--AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINRNT--- 274
++ I S +H K+A + + + V + + D+ + + I +
Sbjct: 197 PDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEG 256
Query: 275 ---VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331
IVG+A HG ID + + ++A+ H +HVD GG ++ +
Sbjct: 257 LIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALI---------LSSHK 307
Query: 332 FSVQGV---TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV----TEWSGGL-YVSP 383
++GV SISVD HK +L ++ K E V
Sbjct: 308 SRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDK 367
Query: 384 TVAGSRPG-GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMT 442
++A ++ L + + ++G + + ++ + + I+ + ++ P ++
Sbjct: 368 SIATTKRFDALK--VFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS 425
Query: 443 IVAF 446
V F
Sbjct: 426 TVLF 429
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 99.8 bits (249), Expect = 1e-22
Identities = 54/307 (17%), Positives = 111/307 (36%), Gaps = 42/307 (13%)
Query: 173 EAEVIAM--TAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226
E E+ M A +LG Q G + S +ES L+A+ ++R + +
Sbjct: 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSE 177
Query: 227 PE---------MIIPVS--AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT- 274
P+ ++ S AHS+ +KA +K+ +PVD F +A++K I +
Sbjct: 178 PDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQ 237
Query: 275 -----VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329
V + + D + ELG + G LH+D G + +
Sbjct: 238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAF-LCPEFRGFLKG 296
Query: 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV-----TEWSGGL--YVS 382
++ S + + K+ + + +++ + F SG ++
Sbjct: 297 ----IEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMH 352
Query: 383 PTVAGSRPGGLIAGA---WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP 439
+ SR + W + S G + + + E+++ + ++ P I +
Sbjct: 353 WQIPLSRR----FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR 408
Query: 440 DMTIVAF 446
+ +V F
Sbjct: 409 HLGLVVF 415
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 99.0 bits (247), Expect = 3e-22
Identities = 60/329 (18%), Positives = 117/329 (35%), Gaps = 50/329 (15%)
Query: 173 EAEVIAM--TAALLGNKEK---ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227
E E + M +L E G+ G + +E+ L+A+ ++R + + P
Sbjct: 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASP 172
Query: 228 E---------MIIPVS--AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT-- 274
++ S AHS+ ++A +KL +P D +F A+++ + R+
Sbjct: 173 GLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA 232
Query: 275 ----VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG--FVLPFAKKLGYPIP 328
+V + D + E+G + LHVD G F+ P + L +
Sbjct: 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-------SGGL-- 379
D S + + HK+ L S + + R F + SG +
Sbjct: 293 FAD-------SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITD 345
Query: 380 YVSPTVAGSRPGGLIAGA---WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFII 436
Y + R + W G +G + +++S + + + P +
Sbjct: 346 YRHWQLPLGRR----FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVC 401
Query: 437 GRPDMTIVAF---GSDVVDIFEVNDIMSS 462
+ +V F GSD ++ + I S+
Sbjct: 402 AEVTLGLVCFRLKGSDGLNEALLERINSA 430
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 99.0 bits (247), Expect = 3e-22
Identities = 54/302 (17%), Positives = 106/302 (35%), Gaps = 43/302 (14%)
Query: 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---NKRGIT-RPE 228
E EV+ AL+G G G GG+ S + AV +R +RG+ P
Sbjct: 150 EEEVLRKLRALVGWSS---GD---GIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPP 203
Query: 229 MIIPVS--AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINRNT------VLI 277
+ + S H + K A + + + V D+ + + +++ I L+
Sbjct: 204 LALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLV 263
Query: 278 VGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV 337
++ G DP++ + ++ HG LHVD GG VL ++ + + +Q
Sbjct: 264 SATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVL-LSQTHRHLLD----GIQRA 318
Query: 338 TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT--------EWSGGL--YVSPTVAG 387
S++ + HK A S +L ++ + ++ V
Sbjct: 319 DSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQC 378
Query: 388 SRPGGLIAGA---WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIV 444
R W + G +G ++ + + +K+ ++ P+ V
Sbjct: 379 GRR----VDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNV 434
Query: 445 AF 446
F
Sbjct: 435 CF 436
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 97.8 bits (244), Expect = 7e-22
Identities = 51/307 (16%), Positives = 105/307 (34%), Gaps = 50/307 (16%)
Query: 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYM----RNKRGITRPE 228
E + ++G K G + GG S + ++ ++R + K P+
Sbjct: 134 EQITLKKMREIVGWSSKDGDGI----FSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPK 189
Query: 229 MIIPVS--AHSAYDKAAQYFNIK---LWRVPVDKEFRADVKAIKKYINRNT------VLI 277
+++ S +H + KA + + ++ + + I +
Sbjct: 190 LVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYV 249
Query: 278 VGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV 337
+A +G DPIQE+ ++ + LHVD GG +L ++K + + ++
Sbjct: 250 NATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLL-MSRKHRHKLNG----IERA 304
Query: 338 TSISVDVHKYGLAPKGTSVVLYRNREI-------------RKHQFVAVTEWSGGLYVSPT 384
S++ + HK S +L + + I + + V+
Sbjct: 305 NSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYD----TGDKA 360
Query: 385 VAGSRPGGLIAGA---WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIP--ELFIIGRP 439
+ R W + G G+ +E++E + IK E+ G P
Sbjct: 361 IQCGRH----VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP 416
Query: 440 DMTIVAF 446
+ T V F
Sbjct: 417 EHTNVCF 423
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 93.2 bits (231), Expect = 2e-20
Identities = 61/350 (17%), Positives = 113/350 (32%), Gaps = 49/350 (14%)
Query: 103 LPRAGLGVGVIEK-LKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPL 161
P G +E L E D G +G E +L+ F H
Sbjct: 41 CPENGWDESTLELFLHELAIMD---SNNFLGNCGVGEREGRVASALVARRHYRFIHGIGR 97
Query: 162 HLDIF--QSVARFEAEVIAMTAALLGNKEKASGGQVCGN-----MTSGGTESI-LLAVKS 213
DI Q A + + +T +L+ + K +G N M +G + ++ L ++
Sbjct: 98 SGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRH 157
Query: 214 SRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV---DKEFRADVKAIKKYI 270
R + +I P + K+ + + E R D+KA++ +
Sbjct: 158 KRPKAK--------YIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 209
Query: 271 NR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL--G 324
+ I + F + D ++EL + ++ V+ G + G
Sbjct: 210 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 269
Query: 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384
+ D VQ + K + P G +++ N + +S
Sbjct: 270 ARVGRIDAFVQ-------SLDKNFMVPVGGAIIAGFNDSFIQE-------------ISKM 309
Query: 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELF 434
G L+SLG GY + K E+ + IK++ E +
Sbjct: 310 YPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAY 359
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 92.5 bits (230), Expect = 4e-20
Identities = 64/409 (15%), Positives = 125/409 (30%), Gaps = 53/409 (12%)
Query: 73 VNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVG-VIEKLKEEKGKDVV-WQG-K 129
+++V+ +++ G + P V++ ++ V W K
Sbjct: 18 AEYLENIRERRVLPEVKPG--YLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPK 75
Query: 130 CSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKE- 188
S +++ + S + E ++ +L
Sbjct: 76 FHAYFPTANSYP----AIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAE 131
Query: 189 --KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE---------MIIPVS--A 235
SGG+ G + +ES L+A+ ++ + PE ++ S A
Sbjct: 132 FLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191
Query: 236 HSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT------VLIVGSAPGFPHGII 289
HS+ ++A +KL R + R A++K I ++ V +
Sbjct: 192 HSSVERAGLLGGVKL-RSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAF 250
Query: 290 DPIQELGELALSHGTCLHVDLCLGG--FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY 347
D + E G + H +HVD G F+ P + L I D S + + HK+
Sbjct: 251 DYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD-------SFNFNPHKW 303
Query: 348 GLAPKGTSVVLYRNREIRKHQFVAV-----TEWSGGL--YVSPTVAGSRPGGLIAGA--- 397
L S + ++ + F + G Y + R A
Sbjct: 304 MLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRR----FRALKL 359
Query: 398 WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAF 446
W L G E + + ++ + +M +V F
Sbjct: 360 WFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCF 408
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 91.2 bits (226), Expect = 7e-20
Identities = 36/254 (14%), Positives = 80/254 (31%), Gaps = 34/254 (13%)
Query: 189 KASGGQVCGNMTSGGTESI-LLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247
+ M +G + ++ L ++ R + +I P + K+
Sbjct: 114 HSVASCFVVPMATGMSLTLCFLTLRHKRPKAK--------YIIWPRIDQKSCFKSMVTAG 165
Query: 248 IKLWRVPV---DKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELAL 300
+ + E R D+KA++ I + + + + F + D ++EL +
Sbjct: 166 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICA 225
Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
++ V+ G + V + + + K + P G +++
Sbjct: 226 NYDIPHVVNNAYGLQSSKCMHLI-----QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGF 280
Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
N + +S G L+SLG GY + K E+
Sbjct: 281 NEPFIQD-------------ISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMF 327
Query: 421 ESIQKGIKEIPELF 434
+ +K++ E
Sbjct: 328 VYLSTQLKKLAEAH 341
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 57.5 bits (140), Expect = 5e-09
Identities = 58/276 (21%), Positives = 98/276 (35%), Gaps = 88/276 (31%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRG--IT-RPEMIIPVSAHSAYDKAAQYFNIKLWRV--- 253
TSG TES LA+K + ++ + K IT + E H A + + + V
Sbjct: 91 TSGATESDNLAIKGAANFYQKKGKHIITSKTE-------HKAVLDTCRQLEREGFEVTYL 143
Query: 254 PVDKEFRADVKAIKKYINRNTVLI--------VGSAPGFPHGIIDPIQELGELALSHGTC 305
+ D+K ++ + +T+L+ +G + I +GE+ + G
Sbjct: 144 APQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGV--------VQDIAAIGEMCRARGII 195
Query: 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HK-YGLAPK 352
HVD + Q V + +D+ HK YG PK
Sbjct: 196 YHVD-----------------------ATQSVGKLPIDLSQLKVDLMSFSGHKIYG--PK 230
Query: 353 GTSVVLYRNREIRKHQFVAVTEW-SGGLYVSPTVA---GSRPGGL----IAGAWAALMSL 404
G LY +R+ V + GG G R G L I G A +
Sbjct: 231 GIG-ALY----VRRKPRVRIEAQMHGG-------GHERGMRSGTLPVHQIVGMGEA-YRI 277
Query: 405 GQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD 440
+E + + + + GIK+I E+++ G +
Sbjct: 278 AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLE 313
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 57.1 bits (139), Expect = 6e-09
Identities = 53/274 (19%), Positives = 93/274 (33%), Gaps = 87/274 (31%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY-----FNIKLWRVP 254
TSG TE+ LA+ K +++ H + A++ F ++ +P
Sbjct: 66 TSGATEANNLAIIGYAMRNARKGK----HILVSAVEHMSVINPAKFLQKQGFEVE--YIP 119
Query: 255 VDKEFRADVKAIKKYINRNTVLI--------VGSAPGFPHGIIDPIQELGELALSHGTCL 306
V K DV I + + +T+L+ +G+ I P++E+ E+ L
Sbjct: 120 VGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGT--------IQPVEEISEVLAGKAA-L 170
Query: 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HK-YGLAPKG 353
H+D + V I VDV + YG PKG
Sbjct: 171 HID-----------------------ATASVGQIEVDVEKIGADMLTISSNDIYG--PKG 205
Query: 354 TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVA---GSRPGGL----IAGAWAALMSLGQ 406
L+ +E + + GG G R G I G A +
Sbjct: 206 VG-ALWIRKEAKLQPVI-----LGG-------GQENGLRSGSENVPSIVGFGKA-AEITA 251
Query: 407 EGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD 440
+ E + + + + I + +I E ++ G P+
Sbjct: 252 MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPE 285
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 51.6 bits (124), Expect = 3e-07
Identities = 41/318 (12%), Positives = 98/318 (30%), Gaps = 48/318 (15%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAH-SAYDKAAQYFNIKLWRVPVD 256
T+G E+ + S + + +++ + H S+Y AA+ + + VP
Sbjct: 75 TNGAREAKFAVMHS----------LAKKDAWVVMDENCHYSSYV-AAERAGLNIALVPKT 123
Query: 257 --KEFRADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQELGELALSHGTCLHVD 309
++ + + I + G + ++++ ++ + L V+
Sbjct: 124 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVN 183
Query: 310 LCLGGFVLPF-AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQ 368
+P K++G DF V S HK +A G V+ E +
Sbjct: 184 GAYAIGRMPVSLKEIGA-----DFIVG---S----GHK-SMAASGPIGVMGMKEEWAEIV 230
Query: 369 FVAVTEWSGG----LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQ 424
++ L + A L+A ++ + ++ +E +
Sbjct: 231 LRRSEKYKNKEVELLGCTARGATI--ITLMA-SFPHVRE-----RIKRWDEEVEKARRFA 282
Query: 425 KGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQH 484
++++ + +G ++E++ + L + IH
Sbjct: 283 AEMEKLG-IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLT 341
Query: 485 VAVVDVFLRDLRESVETV 502
E V+ V
Sbjct: 342 RYFKLSTYGLSDEEVDYV 359
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 50.5 bits (122), Expect = 6e-07
Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 74/197 (37%)
Query: 200 TSGGTESILLAVKS-SRDYMRNKRGI--TRPEMIIPVSAHSAYDKAAQY-----FNIKLW 251
TS TESI +K+ + + + KR I T E H A + +Y F +K
Sbjct: 67 TSCATESINWILKTVAETFEKRKRTIITTPIE-------HKAVLETMKYLSMKGFKVK-- 117
Query: 252 RVPVDKEFRADVKAIKKYINRNTVLI--------VGSAPGFPHGIIDPIQELGELALSHG 303
VPVD ++ ++K ++ +T L+ VG+ I P++++ +
Sbjct: 118 YVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGT--------IQPVEDVTRIVKKKN 169
Query: 304 TC--LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HK-YG 348
+HVD +VQ + I + HK +G
Sbjct: 170 KETLVHVD-----------------------AVQTIGKIPFSLEKLEVDYASFSAHKFHG 206
Query: 349 LAPKGTSVVLYRNREIR 365
PKG + Y + +
Sbjct: 207 --PKGVG-ITYIRKGVP 220
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 5e-06
Identities = 74/457 (16%), Positives = 125/457 (27%), Gaps = 203/457 (44%)
Query: 135 YIG--GSEAE----GHFS-----LINEACSMFAHTNPLH-------------LDIFQSVA 170
++G S E G F + E + + N +H L + +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 171 R--FEAEVIA-------MTAALLG--NKEKAS-----GGQVCGNMTSGGTESILLAV-KS 213
+ A ++A +AL + A GGQ GN E L + ++
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYFEE--LRDLYQT 179
Query: 214 SR----DYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW-----RVPVDKEFRADVK 264
D ++ + + A + Q NI W P DK++
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVF---TQGLNILEWLENPSNTP-DKDYLL--- 232
Query: 265 AIKKYINRNTVLIVGSAP-GFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323
S P P +I G + L+H +V+ AK L
Sbjct: 233 ---------------SIPISCP--LI------GVIQLAH------------YVV-TAKLL 256
Query: 324 GYPIPPFDF--SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381
G+ P + ++G T S + AV
Sbjct: 257 GFT--PGELRSYLKGATGHSQGL------------------------VTAV--------- 281
Query: 382 SPTVAGSRPGGLIAGA--WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIG-R 438
IA W E + + + + V LF IG R
Sbjct: 282 -----------AIAETDSW--------ESFFVSVRKAITV-------------LFFIGVR 309
Query: 439 -----PDMTIVAFGSDVVDIFEVNDI----MSS-KGWHLNPLQR---------PNSIHIC 479
P+ ++ S + D E N+ M S +Q P +
Sbjct: 310 CYEAYPNTSLPP--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 480 VTL----QHVAVV-----DVFLRDLRESVETVKQNPG 507
++L +++ VV L L ++ K G
Sbjct: 368 ISLVNGAKNL-VVSGPPQS--LYGLNLTLRKAKAPSG 401
Score = 42.0 bits (98), Expect = 5e-04
Identities = 59/298 (19%), Positives = 88/298 (29%), Gaps = 94/298 (31%)
Query: 298 LALSHG---TCLHV--DLCLGGFVL--PFAKKLGYPIPPFDFSVQ--------------G 336
L LSHG L V L F K L P P F+ G
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKIL--PEPTEGFAADDEPTTPAELVGKFLG 66
Query: 337 VTSISVDVHKYGLAPKGTSVVL------Y-RNREIRKHQFVA--VTEWSGGL-------- 379
S V+ K G + ++ L Y +I H A + E L
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIK 124
Query: 380 -YVSPTVAGSRPGG------LIAGAW---AALMSL--GQ---EGYLENTKAIMEVSES-I 423
Y++ + RP L A L+++ GQ + Y E + + + +
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 424 QKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVN-DIMSSKGWHLNPLQRPNSIH----- 477
IK E ++ D +F +I+ W NP P+ +
Sbjct: 185 GDLIKFSAETL------SELIRTTLDAEKVFTQGLNILE---WLENPSNTPDKDYLLSIP 235
Query: 478 -----ICVT-LQHVAVVDVFLRDLRESVETVKQNPGPANGSLAPIYGAAGRMPDRGMV 529
I V L H V + + PG L GA G +G+V
Sbjct: 236 ISCPLIGVIQLAHYVVT----------AKLLGFTPGELRSYLK---GATGHS--QGLV 278
Score = 35.0 bits (80), Expect = 0.085
Identities = 37/268 (13%), Positives = 73/268 (27%), Gaps = 110/268 (41%)
Query: 318 PFAKKL-----GYPIPPFDFSVQGVTS---ISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369
A+ + + + FS+ + +++ +H G KG + IR++ +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG--EKG--------KRIREN-Y 1688
Query: 370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYL---ENTK-AIMEVSES 422
A+ + + + + S ++G L + T+ A+ + ++
Sbjct: 1689 SAMI------FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 423 IQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWH-------LNPLQRPNS 475
+ +K + I P A G H L
Sbjct: 1743 AFEDLKS--KGLI---PADATFA-G------------------HSLGEYAAL-------- 1770
Query: 476 IHICVTLQHVAVVDVFLRDLRESVETVK------QNPGPANGSLAPIYGAAGRMPDRGMV 529
++ DV + VE V Q P + YG P R +
Sbjct: 1771 ---------ASLADVM--SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR-VA 1818
Query: 530 -------------------NELL--VNY 536
L+ VNY
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNY 1846
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 50/217 (23%)
Query: 39 VARVLQSFLDAVREKGFKQTFVAF--FMSSIKLVPGV-----NKYIEAEKQKVVDKMQSG 91
+ +++S L+ + +++ F F S + + I+++ VV+K+
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK- 413
Query: 92 VKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINE- 150
S E E + + + K+K E E H S+++
Sbjct: 414 -YSLVEKQPKESTISIPSIYLELKVKLEN-------------------EYALHRSIVDHY 453
Query: 151 ---ACSMFAHTNPLHLD--IFQSVAR--FEAEVIAMTAAL---------LGNKEKASGGQ 194
P +LD + + E L K +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 195 VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231
SG + L +K + Y+ + + E ++
Sbjct: 514 WNA---SGSILNTLQQLKFYKPYICDNDP--KYERLV 545
Score = 33.7 bits (76), Expect = 0.18
Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 32/133 (24%)
Query: 410 LENTKAIM---EVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSK-GW 465
+ K+I+ E+ I L + T+++ ++V F V +++ +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFW----TLLSKQEEMVQKF-VEEVLRINYKF 93
Query: 466 HLNPLQRPNSIHICVTLQHVAVVDVFLRD-----------------LRESVETVKQNPGP 508
++P++ +T ++ D D LR+++ ++
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 509 ANGSLAPIYGAAG 521
I G G
Sbjct: 154 L------IDGVLG 160
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 41.8 bits (99), Expect = 4e-04
Identities = 37/216 (17%), Positives = 59/216 (27%), Gaps = 86/216 (39%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-------------HSAYDKAAQYF 246
TSGGTES L + S+ ++ + + H + ++
Sbjct: 84 TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHL 143
Query: 247 NIKL-WRV---PVDKEF-RADVKAIKKYINRNTVLI--------VGSAPGFPHGIIDPIQ 293
V PV K + +V+ I + T L+ G+I PI
Sbjct: 144 VEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNET--------GVIMPIS 195
Query: 294 ELGELALSHGTC----------LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVD 343
E+ + +H D + Q + VD
Sbjct: 196 EISRRIKALNQIRAASGLPRVLVHTD-----------------------AAQALGKRRVD 232
Query: 344 V------------HK-YGLAPK-GTSVVLYRNREIR 365
V HK YG P+ G LY +
Sbjct: 233 VEDLGVDFLTIVGHKFYG--PRIG---ALYVRGVGK 263
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 39.8 bits (94), Expect = 0.002
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 195 VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254
V GN G +E I L++ +++I V +++ Y+ A+ + +
Sbjct: 82 VLGN---GASEIIELSISLFE------------KILIIVPSYAEYEINAKKHGVSVVFSY 126
Query: 255 VDKEFRADVKAIKKYINRNTVLIVGS 280
+D+ D + I I+ +I+G+
Sbjct: 127 LDENMCIDYEDIISKIDDVDSVIIGN 152
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 39.2 bits (92), Expect = 0.003
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 13/111 (11%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK 257
T G + ++ ++ R + + + K + +
Sbjct: 111 TVGSMQGCFVS------FLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFE 164
Query: 258 E--FRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHG 303
+ K I+ S P P + ++ +GELA H
Sbjct: 165 YRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHD 215
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 38.4 bits (90), Expect = 0.004
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 25/116 (21%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPV- 255
+ SGG+ IL+A+ I ++P Y+ + + I
Sbjct: 109 LCSGGSHGILMAI----------TAICDAGDYALVPQPGFPHYETVCKAYGIG----MHF 154
Query: 256 -----DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHG 303
+ ++ AD+ I++ + T L++ + P P G ++++ LA
Sbjct: 155 YNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELR 210
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 38.3 bits (90), Expect = 0.005
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYF--NIKLWRVPV 255
T+G T + LL + + P +I + + + LW++
Sbjct: 87 TNGATGANLLVL----------YSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEE 136
Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVD 309
+ + D++ +++ I T +I + P G + ++EL E+A G + D
Sbjct: 137 ENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD 193
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 37.6 bits (88), Expect = 0.009
Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256
+TSG +++I L + + P +++P S Y A+ I++ +
Sbjct: 123 LTSGCSQAIDLCLAV----------LANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLL 172
Query: 257 KE--FRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHG 303
E + D+K ++ I+ T ++ + P P G + +Q++ +A
Sbjct: 173 PEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQC 224
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 37.5 bits (88), Expect = 0.009
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 17/119 (14%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRP---EMIIPVSAHSAYDKAAQYFNIKLWRVPV 255
MT G S+ + ++ +T E I Y +L VP
Sbjct: 104 MTMGAAASLSICFRA----------LTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPA 153
Query: 256 DKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDL 310
D E F+ D A+++ IN +T ++ ++P P G + + I++L +L + +
Sbjct: 154 DTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPI 212
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 36.7 bits (85), Expect = 0.016
Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 11/130 (8%)
Query: 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307
+ + + + + I+++T +++ + + G + +Q L L+ G
Sbjct: 140 ADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAI 199
Query: 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH 367
DL P D G +KY G+ ++ + ++
Sbjct: 200 WDLAHS-----------AGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL 248
Query: 368 QFVAVTEWSG 377
++ W G
Sbjct: 249 VPQPLSGWFG 258
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 36.0 bits (84), Expect = 0.029
Identities = 6/50 (12%), Positives = 21/50 (42%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLI 277
++ Y + A ++ +P+ ++ D++ + I+ T ++
Sbjct: 110 NTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIV 159
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 35.6 bits (83), Expect = 0.033
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT 274
+++IP + + A+ +K+ +V + + D++ +K + +
Sbjct: 94 QLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYS 140
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 35.4 bits (81), Expect = 0.043
Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 26/211 (12%)
Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234
++ + ++G A+ ++ + + T ++ L + S + I P S
Sbjct: 115 SIVGLMKDIVG----ANEKEIA--LMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFP-S 167
Query: 235 AHSAYDKAAQYFNIKLWRVPVDKEFR--------ADVKAIKKYINRNTVLIVGSAPGFPH 286
H A + Q + + + R D+ + + + +I+ S F
Sbjct: 168 DHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYT 227
Query: 287 GIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHK 346
G I + + + G + DL GV +K
Sbjct: 228 GQHFNIPAITKAGQAKGCYVGFDLAHA-----------VGNVELYLHDWGVDFACWCSYK 276
Query: 347 YGLAPKGTSVVLYRNREIRKHQFVAVTEWSG 377
Y A G + + + A+ W G
Sbjct: 277 YLNAGAGGIAGAFIHEKHAHTIKPALVGWFG 307
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 34.7 bits (80), Expect = 0.072
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGF----PHGIIDPIQELGELA-- 299
+NI VP+ + D +A+ I+ NT +I P I I+E+
Sbjct: 138 YNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKE 197
Query: 300 LSHGTCLHVDLCLGGFV 316
+ + VD C G F+
Sbjct: 198 IKPDVVVFVDNCYGEFI 214
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 34.4 bits (79), Expect = 0.091
Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAP------GFPHGIIDPIQELGELA 299
F I +V + ++ + +++ I+K + + + + +I+ I+ + +
Sbjct: 147 FGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCV 206
Query: 300 --LSHGTCLHVDLCLGGFVL 317
+ VD C G F+
Sbjct: 207 KNIRKDIICFVDNCYGEFMD 226
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 32.5 bits (74), Expect = 0.30
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 260 RADVKAIKKYINRNTVLIVGSAPG-FP-HGIIDPIQELGELALSHGTCLHVDLCLG 313
V I I+++T++I+ + + + +++ A + + VD G
Sbjct: 128 SDKVGEILNKIDKDTLVIITGSTMDLKVIELEN-FKKVINTAKNKEAIVFVDDASG 182
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 32.1 bits (74), Expect = 0.41
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK 257
T+GG+E+IL + I P E+++ ++ Y+ A+ +KL V
Sbjct: 108 TNGGSEAILFSF----------AVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRM 157
Query: 258 E--FRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHG 303
E F + ++ +IN T IV S P P G++ D ++ L E+A HG
Sbjct: 158 EEGFA-IPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHG 207
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 32.2 bits (74), Expect = 0.47
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPV-- 255
T G TE+I AV G+ P E+++ + +Y VP+
Sbjct: 92 TVGATEAIAAAV----------LGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVP 141
Query: 256 -DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA 299
+ F D A+++ + T ++ ++P P G + EL +A
Sbjct: 142 DGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIA 186
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 31.8 bits (73), Expect = 0.51
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVD- 256
T+G TE++ A+ + R E+I ++ +Y A + R+ +
Sbjct: 97 TAGATEALYAAI----------TALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP 146
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA 299
FR D + ++ T L++ + P P + + L
Sbjct: 147 PHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALW 189
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 31.8 bits (73), Expect = 0.63
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR-P 227
FE ++ LG T+ G+ + LLA+ + R +
Sbjct: 64 NDAFEKKL----GEYLGVPY--------VLTTTSGSSANLLALTALTSPKLGVRALKPGD 111
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIV 278
E+I + + V VD + + I+ ++ T I+
Sbjct: 112 EVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIM 163
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 31.3 bits (72), Expect = 0.80
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 49/130 (37%)
Query: 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQELGELALSHGTCLH 307
V +D++ D++ K ++ T L+ H G ++P +E+ +LA G +
Sbjct: 149 VQLDEQESFDLEHFKTLLSEKTKLV-----TVVHISNTLGCVNPAEEIAQLAHQAGAKVL 203
Query: 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HK-YGLAPKGT 354
VD C Q +DV HK P G
Sbjct: 204 VDAC-----------------------QSAPHYPLDVQLIDCDWLVASGHKMCA--PTGI 238
Query: 355 SVVLYRNREI 364
LY EI
Sbjct: 239 G-FLYGKEEI 247
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 31.4 bits (72), Expect = 0.81
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 44/141 (31%)
Query: 243 AQYFNIKLWRVPVDKEFR--ADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQEL 295
A F I PV + ++ T L++ H G + P+ E+
Sbjct: 122 AARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVI-----LSHLLWNTGQVLPLAEI 176
Query: 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV----------- 344
+ H V + + G Q S+ +D
Sbjct: 177 MAVCRRHQGNYPVRVLVDG-------------------AQSAGSLPLDFSRLEVDYYAFT 217
Query: 345 -HKYGLAPKGTSVVLYRNREI 364
HK+ P G LY + +
Sbjct: 218 GHKWFAGPAGVG-GLYIHGDC 237
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 31.3 bits (72), Expect = 0.84
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 49/130 (37%)
Query: 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQELGELALSHGTCLH 307
+P++ + ++ + + T L+ H G +P+ E+ LA HG +
Sbjct: 144 IPLNPDGTLQLETLPTLFDEKTRLL-----AITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HK-YGLAPKGT 354
VD Q V VDV HK YG P G
Sbjct: 199 VDGA-----------------------QAVMHHPVDVQALDCDFYVFSGHKLYG--PTGI 233
Query: 355 SVVLYRNREI 364
+LY +
Sbjct: 234 G-ILYVKEAL 242
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 30.9 bits (70), Expect = 1.0
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 246 FNIKLWRVPVDKEFRADVKAIKKYINRNT--VLIVGSA--PGFPHGIIDPIQELGELALS 301
F+I VP+ + D I K + T + I S P I+ I+E+ +
Sbjct: 132 FHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKN 191
Query: 302 HG--TCLHVDLCLGGFV 316
+ VD C G FV
Sbjct: 192 INPEVIVFVDNCYGEFV 208
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 31.0 bits (71), Expect = 1.0
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 261 ADVKAIKKYINRNTVLIVGSAPGFPH-GIIDPIQELGELALSHGTCLHVD 309
D+ ++ ++ T + P P ++D I + ELA + G + +D
Sbjct: 154 DDLSQWERALSVPTQAVFFETPSNPMQSLVD-IAAVTELAHAAGAKVVLD 202
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 31.0 bits (71), Expect = 1.1
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 261 ADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD 309
A + I+ + T ++ P P + I+ + +A G L VD
Sbjct: 137 AKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD 185
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 30.6 bits (70), Expect = 1.2
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 44 QSFLDAVREKGFKQTFVAFFM----SSIKLVPGVNKYIEAEKQKVVDK 87
+ + G K T + + +K +P N + Q ++ K
Sbjct: 57 VAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRK 104
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 1.2
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 21/101 (20%)
Query: 171 RFEAEVIAMTAALLGNKEKAS-GGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM 229
F+ + + +T A G K S G +V + GG + + V +SR + + +
Sbjct: 473 TFKDKYVLITGA--G---KGSIGAEVLQGLLQGGAKVV---VTTSR-FSKQVTDYYQ--- 520
Query: 230 IIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYI 270
S Y K L VP ++ + DV+A+ ++I
Sbjct: 521 -------SIYAKYGAK-GSTLIVVPFNQGSKQDVEALIEFI 553
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 30.6 bits (70), Expect = 1.3
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPH 286
+++ PV Y +AQ+ ++ VP+ +F D A+ + ++ + P P
Sbjct: 111 KVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPT 170
Query: 287 GIIDPIQELGELA 299
G + ++ +
Sbjct: 171 GNLFDAADMEAIV 183
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.3
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 7 KSSLIRFRASANSFLSQYEPVILLLAPLLTL 37
K +L + +AS L Y AP L +
Sbjct: 19 KQALKKLQAS----LKLYADDS---APALAI 42
Score = 29.5 bits (65), Expect = 1.4
Identities = 6/14 (42%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 80 EKQKVVDKMQSGVK 93
EKQ + K+Q+ +K
Sbjct: 18 EKQAL-KKLQASLK 30
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding,
nucleotide- binding, protein kinase inhibitor,
sporulation; 3.01A {Bacillus subtilis}
Length = 141
Score = 29.5 bits (67), Expect = 1.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 15/52 (28%)
Query: 249 KLWRVPV--DKEFRADVKAIKKYIN-------------RNTVLIVGSAPGFP 285
++ +PV EF D++ + K V ++G APGFP
Sbjct: 1 RIVEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHTNGEYVVYMLGFAPGFP 52
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 30.6 bits (70), Expect = 1.4
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG 287
E+ ++S Y A+ ++ + +FR + V + + P P G
Sbjct: 108 EIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRIAGFPER---YEGKVFFLTT-PNAPLG 163
Query: 288 IIDPIQELGELA 299
P++ + ELA
Sbjct: 164 PSFPLEYIDELA 175
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 30.2 bits (69), Expect = 1.5
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH 286
+ Y ++ + + + + D + +V + P P
Sbjct: 91 MRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLA--QVSRDDCVVLANPSNPT 148
Query: 287 GIIDPIQELGELA 299
G EL +L
Sbjct: 149 GQALSAGELDQLR 161
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 30.2 bits (69), Expect = 1.6
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK 257
TSG TE++ + + + + P E+++ Y A K V +D
Sbjct: 84 TSGATEALYVLL----------QSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDL 133
Query: 258 E---FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA 299
FR D+ A++K + T ++ + P P G++ +EL +A
Sbjct: 134 TPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIA 178
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: LLP; 2.0A {Thermus
thermophilus}
Length = 412
Score = 30.2 bits (69), Expect = 1.8
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 262 DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD 309
+ +A+++ ++ T + P ++ ++ L LA G L VD
Sbjct: 129 EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVD 176
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A
{Thermoplasma acidophilum dsm 1728}
Length = 224
Score = 29.5 bits (67), Expect = 2.2
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 51 REKGFKQTFVAFFM----SSIKLVPGVNKYIEAEKQKVVDK 87
+ + K T F S +K P +N + ++ + K
Sbjct: 51 KARNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILK 91
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 29.8 bits (68), Expect = 2.2
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLI 277
+ + Y+ A+ K ++ + K + + LI
Sbjct: 108 AFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLI 157
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin,
methyltransferase, transfera; HET: SAH; 2.22A
{Rhodobacter capsulatus}
Length = 251
Score = 29.6 bits (67), Expect = 2.5
Identities = 7/65 (10%), Positives = 15/65 (23%), Gaps = 7/65 (10%)
Query: 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAI-MEVSESIQKGIKEIPELFIIGRPDMTIVA 445
+P ++ A S+S + E+ ++
Sbjct: 145 NLKPFEILEKRLRHAARGDF------AMAFYNPRSKSRPHQFTRVLEILREECEPGRLIL 198
Query: 446 FGSDV 450
F V
Sbjct: 199 FARAV 203
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 29.8 bits (66), Expect = 2.7
Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 264 KAIKKYINRNTVLIVGSAPGFPHGI----IDPIQELGELALSHGTCLHVDLCLGGFVLPF 319
+ I ++ N V IV + G + ++E+ E+A HG + +D F
Sbjct: 174 ENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYF 233
Query: 320 AKKLGYPIPPFDFS------VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT 373
K + ++++ K L G V + N EI F
Sbjct: 234 IKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI----FTLAR 289
Query: 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE 411
+ + T G + A L +E YL
Sbjct: 290 QRCVPMEGFVTYGGLAGRDMAAMV-QGLEEGTEEEYLH 326
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 29.7 bits (66), Expect = 2.8
Identities = 30/231 (12%), Positives = 62/231 (26%), Gaps = 19/231 (8%)
Query: 266 IKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG- 324
K + V + + G+ +E +L LH D G+ F
Sbjct: 305 TKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGY-ARFNPIYAD 362
Query: 325 -YPIPPFDFSVQGVTSISVD-VHKYGLAPKGTSVVLYRN--REIRKHQFVAVTEWSGGLY 380
Y + G T + HK A S + R I +F
Sbjct: 363 HYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ--------A 414
Query: 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPD 440
S + A A+ + L T+ +++ + ++ + + + F
Sbjct: 415 YMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSW 474
Query: 441 MTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVF 491
F ++ + + P + ++ C + F
Sbjct: 475 F----FKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGF 521
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 29.4 bits (67), Expect = 2.9
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 261 ADVKAIKKYINRNTVLIVGSAPGFPH-GIIDPIQELGELALSHGTCLHVD 309
AD++A++ + T +I +P P+ + D I + ++A HG + VD
Sbjct: 138 ADLQALEAAMTPATRVIYFESPANPNMHMAD-IAGVAKIARKHGATVVVD 186
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 29.5 bits (67), Expect = 3.0
Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPH 286
+ ++S + A+ + + V +FR D+ + I ++ + P P
Sbjct: 118 TALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPT 177
Query: 287 GIIDPIQELGELA 299
G + + ++ +
Sbjct: 178 GDVTSLDDVERII 190
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 29.0 bits (66), Expect = 3.9
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 261 ADVKAIKKYINRNTVLIVGSAPGFPH-GIIDPIQELGELALSHGTCLHVD 309
+DV+ +K NT ++ +P P + D I+ + + G L VD
Sbjct: 132 SDVEKVKAAWKPNTKMVYLESPANPTCKVSD-IKGIAVVCHERGARLVVD 180
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 29.4 bits (66), Expect = 4.3
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 413 TKAIMEVSESIQKGIKEIPELFIIGR------------PDMTIVAFGSDVVDIFEVNDIM 460
++V + + ++++ L GR + IV+ GS I EV + +
Sbjct: 232 NPYYLKVPGIVAEYMQKVASLT--GRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHL 289
Query: 461 SSKGWHLNPLQ----RPNSI-----HICVTLQHVAVVD 489
++KG + ++ RP + + + + V+D
Sbjct: 290 AAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLD 327
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 28.9 bits (64), Expect = 4.5
Identities = 24/205 (11%), Positives = 57/205 (27%), Gaps = 14/205 (6%)
Query: 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGEL 298
Y+ + + IK W + + + +K + N + G P + +
Sbjct: 148 YEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILN 207
Query: 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIP---PFDFSVQGVTSISVDVHKYGLAPK--G 353
+ L + + + Y P + + + ++D K+ G
Sbjct: 208 HENIKVDLQREFIVEE--RTHYDHVFYSGPLDAFYGYQYGRLGYRTLDFKKFTYQGDYQG 265
Query: 354 TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENT 413
+V+ Y + ++ + +S +V A Y
Sbjct: 266 CAVMNYCSVDVPYTRITEHKYFSPWEQHDGSVCYKEY-------SRACEENDIPYYPIRQ 318
Query: 414 KAIMEVSESIQKGIKEIPELFIIGR 438
M + E + + +GR
Sbjct: 319 MGEMALLEKYLSLAENETNITFVGR 343
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 28.8 bits (65), Expect = 4.7
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 23/113 (20%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQ-----------YF 246
G S+ ++ +G+ P E+II V + Y+ +
Sbjct: 91 AVGAYGSLFNSI----------QGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRS 140
Query: 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA 299
++ D + ++ + T I+ + P P G + QEL +A
Sbjct: 141 KPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIA 193
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 29.0 bits (65), Expect = 4.8
Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPV-- 255
GGT ++ +S + G+ + ++ I + + Y + + L V +
Sbjct: 171 VEGGTAAMAYIFESLK-----LNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINA 225
Query: 256 --DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHV 308
++ + K + + P P + ++ + + H L +
Sbjct: 226 DPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMI 283
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 29.0 bits (65), Expect = 4.9
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV---- 255
T GGT +I+ A S + K+G ++ I + Y + + + +L V +
Sbjct: 170 TEGGTAAIVYAFHSLAENHLLKKG---DKIAINEPIFTPYLRIPELKDYELVEVDLHSYE 226
Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSH 302
++ + I+K + + ++ P P + + + + +
Sbjct: 227 KNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKN 276
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 28.7 bits (65), Expect = 5.1
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK 257
T+ TE++ L + P E+++P ++ Y +++ K +
Sbjct: 107 TAAVTEALQLIF----------GALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIE 156
Query: 258 E--FRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHG 303
E ++ D+ I+K I T I P P G + ++E+ +A +
Sbjct: 157 EEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYE 207
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 28.4 bits (64), Expect = 5.7
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 24/114 (21%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQ------------Y 245
T GG ++ A + + E+II Y+
Sbjct: 97 TVGGYGALFTAF----------QALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKP 146
Query: 246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA 299
I+ + ++ D + T +V + P P G + +EL +A
Sbjct: 147 GPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVA 200
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 28.4 bits (64), Expect = 6.0
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 22/112 (19%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVP--- 254
T G E++ + +G E+II Y+ + +P
Sbjct: 107 TVGAYEALYATI----------QGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKP 156
Query: 255 -------VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA 299
++ D ++ N T +I+ + P P G + EL +A
Sbjct: 157 NKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVA 208
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 28.4 bits (64), Expect = 6.8
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 48 DAVREKGFKQTFVAFFM----SSIKLVPGVNKYIEAEKQKVVDK 87
EKG K TF+ + + S+++ P +N I+ E ++++ K
Sbjct: 244 AIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQK 287
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 28.3 bits (64), Expect = 6.9
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNT----VLIVGSAPGFPH-----GIIDPIQ 293
A I + R DV+AI +N + + +V H G+++PI
Sbjct: 99 AGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMV-------HSETTTGMLNPID 151
Query: 294 ELGELALSHGTCLHVD 309
E+G LA +G VD
Sbjct: 152 EVGALAHRYGKTYIVD 167
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 28.3 bits (64), Expect = 7.2
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKS--SRDYMRNKRGITR 226
V ++E + A G+K M S G+ + LL + + R K+G
Sbjct: 36 VKQYETQF----AKTFGSKY--------AVMVSSGSTANLLMIAALFFTKKPRLKKG--- 80
Query: 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFR---ADVKAIKKYINRNTVLIV 278
E+I+P + S Q + +++ VD + D++++K+ + +T I+
Sbjct: 81 DEIIVPAVSWSTTYYPLQQYGLRV--KFVDIDINTLNIDIESLKEAVTDSTKAIL 133
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 28.3 bits (64), Expect = 7.3
Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 71/242 (29%)
Query: 242 AAQYFNIKLWRVPVDKEF-RADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQEL 295
AA + K+ VD E + I+++T L+ G + ++ +
Sbjct: 133 AAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLV-----AVNSASGTLGGVTDLRAM 187
Query: 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV----------- 344
+L G + VD +D+
Sbjct: 188 TKLVHDVGALVVVDHS-----------------------AAAPYRLLDIRETDADVVTVN 224
Query: 345 -HKYGLAPKGTSVVLYRNREI-RKHQFVAVTEWSGGLYVSPTV--AGSRPGGLIAGAWAA 400
H + P +++R+ + V+ ++ G P G GL+AG A+
Sbjct: 225 AHAW-GGPPIG-AMVFRDPSVMNSFGSVSTNPYATG----PARLEIGVHQFGLLAGVVAS 278
Query: 401 ---LMSLGQEGYLENTKAIMEVSESIQ-----------KGIKEIPELFIIGRPDM--TIV 444
L +L + + + +S ++ +P + +IGRP+ +V
Sbjct: 279 IEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVV 338
Query: 445 AF 446
+F
Sbjct: 339 SF 340
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 28.0 bits (62), Expect = 9.5
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234
+ I ++GN V G G T+ AV + + + ++
Sbjct: 75 DAIKDLHGVVGNAATEDRYIVVGT---GSTQLCQAAVHA----LSSLARSQPVSVVAAAP 127
Query: 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQE 294
+S Y + Y +++ D + + + + ++P P G I +
Sbjct: 128 FYSTYVEETTYVRSGMYKWEGD---------AWGFDKKGPYIELVTSPNNPDGTI--RET 176
Query: 295 LGELALSHGTCLHVD 309
+ + D
Sbjct: 177 VVNRPDDDEAKVIHD 191
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 27.6 bits (62), Expect = 9.5
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 44 QSFLDAVREKGFKQTFVAFFM----SSIKLVPGVNKYIEAEKQKVVDK 87
+ +G K +F+ FF+ + P +N ++ Q + K
Sbjct: 72 EELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,383,638
Number of extensions: 530121
Number of successful extensions: 1580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1497
Number of HSP's successfully gapped: 94
Length of query: 541
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 443
Effective length of database: 3,965,535
Effective search space: 1756732005
Effective search space used: 1756732005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)