RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009181
(541 letters)
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 238 bits (608), Expect = 2e-73
Identities = 87/425 (20%), Positives = 168/425 (39%), Gaps = 41/425 (9%)
Query: 117 KEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN--------EACSMFAHTNPLHLDIFQS 168
E DV +Q + +Y+ G+ + + + + + N + + +
Sbjct: 32 LHEMRDDVAFQ-IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQ 90
Query: 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR----GI 224
A + + M A L GQ G T G +E+ +L + + R +
Sbjct: 91 SAAIDLRCVNMVADLWHAPA-PKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKP 149
Query: 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPG 283
T ++ + K A+Y++++L +P+ D K + + + NT+ +V +
Sbjct: 150 TDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGV 209
Query: 284 FPHGIIDPIQ------ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV 337
G + Q + + +H+D GGF+ PF P +DF + V
Sbjct: 210 TYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPF----VAPDIVWDFRLPRV 265
Query: 338 TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397
SIS HK+GLAP G V++R+ E + V ++ GG + + SRP G +
Sbjct: 266 KSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQ 325
Query: 398 WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIP--ELFIIGRPDMTI--VAF-----GS 448
+ + LG+EGY + A +V+ + I ++ E GRPD I V F
Sbjct: 326 YYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED 385
Query: 449 DVVDIFEVNDIMSSKGWHLNPLQRP-NSIHICVTLQHV------AVVDVFLRDLRESVET 501
++++++ + +GW + + I V ++ L D + S++
Sbjct: 386 PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 445
Query: 502 VKQNP 506
+ +P
Sbjct: 446 LSDHP 450
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 167 bits (423), Expect = 2e-46
Identities = 71/474 (14%), Positives = 156/474 (32%), Gaps = 50/474 (10%)
Query: 68 KLVPGVNKYIE-AEKQKVVDKMQSGVKSKREGWWTELPRAGLGV-GVIEKLKEEKGKDVV 125
++V + Y+E E ++V +Q G R P+ +++ +++ V
Sbjct: 12 EMVDYMADYLEGIEGRQVYPDVQPG--YLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69
Query: 126 -WQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
W S + +++ + + E ++ +
Sbjct: 70 HWHSPYFFAYFPTASS----YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKM 125
Query: 184 LGNKEKA---SGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-----------ITRPEM 229
L E G+ G + +E+ L+A+ ++R + + + +
Sbjct: 126 LQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185
Query: 230 IIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT------VLIVGSAPG 283
AHS+ ++A +KL +P D +F A+++ + R+ +V +
Sbjct: 186 YASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGT 245
Query: 284 FPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVD 343
D + E+G + LHVD G + V+ S + +
Sbjct: 246 TSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEF-----RHLLNGVEFADSFNFN 300
Query: 344 VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-----SGGLYVSPTVAGSRPGGLIAGA- 397
HK+ L S + + R F + G ++ P G +
Sbjct: 301 PHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSL 360
Query: 398 --WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAF---GSDVVD 452
W G +G + +++S + + + P + + +V F GSD ++
Sbjct: 361 KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLN 420
Query: 453 IFEVNDIMSSKGWHLNP--LQRPNSIHICVTLQHV--AVVDVFLRDLRESVETV 502
+ I S++ HL P L+ + + + V V + +R +
Sbjct: 421 EALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 143 bits (361), Expect = 4e-38
Identities = 49/351 (13%), Positives = 96/351 (27%), Gaps = 49/351 (13%)
Query: 102 ELPRAGLG-VGVIEKLKEEKGKD-VVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159
+ P G + L E D + G C E +L+ F H
Sbjct: 18 KCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGER----EGRVASALVARRHYRFIHGI 73
Query: 160 PLHLDIFQS---------VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLA 210
DI + + ++ L G A + T L
Sbjct: 74 GRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVA-----SCFVVPMATGMSLTL 128
Query: 211 VKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK---LWRVPVDKEFRADV---- 263
+ + +I P + K+ + + V E R D+
Sbjct: 129 CFLTL----RHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVE 184
Query: 264 KAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323
I++ + + + + F + D ++EL + ++ V+ G
Sbjct: 185 AKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL- 243
Query: 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP 383
V + + + K + P G +++ N + +S
Sbjct: 244 ----IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD-------------ISK 286
Query: 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELF 434
G L+SLG GY + K E+ + +K++ E
Sbjct: 287 MYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAH 337
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 123 bits (308), Expect = 5e-31
Identities = 59/377 (15%), Positives = 122/377 (32%), Gaps = 42/377 (11%)
Query: 102 ELPRAGLGVGVIEK-LKEEKGKDV-VWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159
++P G+ I+ LK D + ++ + E S F H
Sbjct: 37 KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSK----IHEELSSGFCHGI 92
Query: 160 PLHLDIF--QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDY 217
++ Q A + + A+T +L + K G V T T + S+
Sbjct: 93 GRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAA-- 150
Query: 218 MRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK---LWRVPVDKEFRADVKAIKKYINR-- 272
++ +I P ++H + KA + + + V V+ I+ I +
Sbjct: 151 ---RKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEI 207
Query: 273 ---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329
N ++ + FP D I E+ ++ ++ ++ L
Sbjct: 208 ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ---NNYYLEKLKKA 264
Query: 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389
F + V ++ K L P G +V + E K +S + G
Sbjct: 265 FKY---RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE-------------ISLSYPGRA 308
Query: 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPEL--FIIGRPDMTIVAFG 447
+ +L+S+G + YLE K + + + + ++ + + I +
Sbjct: 309 SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCI 368
Query: 448 SDVVDIFEVNDIMSSKG 464
S D E+ + +
Sbjct: 369 SVNSDPVEIAAKLYNLR 385
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 63.8 bits (154), Expect = 2e-11
Identities = 68/361 (18%), Positives = 133/361 (36%), Gaps = 56/361 (15%)
Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240
A L+G A ++ TSG TES LA+K + ++ + K+G A
Sbjct: 58 ADLVG----ADPREIV--FTSGATESDNLAIKGAANFYQ-KKGKHIITSKTEHKAVLDTC 110
Query: 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL 300
+ + ++ + + D+K ++ + +T+L+ G++ I +GE+
Sbjct: 111 RQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCR 170
Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
+ G HVD P D S V +S HK PKG + R
Sbjct: 171 ARGIIYHVDAT-----------QSVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVR 218
Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
RK + + GG + +G+ P I G + +E + + +
Sbjct: 219 ----RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVG-MGEAYRIAKEEMATEMERLRGLR 273
Query: 421 ESIQKGIKEIPELFIIGRPD---MTIVAFGSDVVD----IFEVNDIMSSKGWHLN-PLQR 472
+ GIK+I E+++ G + I+ + V+ I + D+ S G
Sbjct: 274 NRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE 333
Query: 473 PNSIH----ICVTLQHVAV------------VDVFLRDLRESVETVKQNPGPANGSLAPI 516
P+ + + L H ++ +D + +R+S+ ++ L+P+
Sbjct: 334 PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLR--------DLSPL 385
Query: 517 Y 517
+
Sbjct: 386 W 386
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 56.8 bits (136), Expect = 3e-09
Identities = 50/377 (13%), Positives = 109/377 (28%), Gaps = 24/377 (6%)
Query: 146 SLINEACSMFAHTNPLHLDIFQSVARFEA--EVIAMTAALLGNKEKASGGQVCGNMTSGG 203
L EA +FA +P + E+ AL G + G
Sbjct: 80 KLHEEAARLFADLHPYQDPR-TAQGALRLMWELGEYLKALTGM-------DAITLEPAAG 131
Query: 204 TESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADV 263
L + R Y ++ +++ + + A R
Sbjct: 132 AHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVD 191
Query: 264 KAIKKY-INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322
K + + ++ + P I E+ L G L+ D ++ +A+
Sbjct: 192 LEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARP 251
Query: 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR---NREIRKHQFVAVTEWSGGL 379
++ ++ G P G L + + + ++
Sbjct: 252 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPK 311
Query: 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEI-PELFIIGR 438
+ + + AWA + +LG EG + + + +++ +KE + G
Sbjct: 312 SIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGP 371
Query: 439 PDMTIVAFGSDVVDIFEVNDIMSSKGWH----LNPLQRPNSIHICVTLQHV-----AVVD 489
VA + ++ + G+H PL ++ + T A +
Sbjct: 372 SMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAE 431
Query: 490 VFLRDLRESVETVKQNP 506
L++ E ++ P
Sbjct: 432 AMGALLKKPKEWLENAP 448
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 41.9 bits (97), Expect = 1e-04
Identities = 35/275 (12%), Positives = 71/275 (25%), Gaps = 50/275 (18%)
Query: 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226
++ + + L + G + + Y + K G +
Sbjct: 75 RNYYDLKDKA----KELFN-YDYII-------PAHQGRGAENILFPVLLKYKQ-KEGKAK 121
Query: 227 PEMIIPVS------AHSAYDKAAQYFNIKLWRV----PVDKEFRADVKAIKKYINRNTVL 276
+ I AH + + D + D+K +K+ I ++
Sbjct: 122 NPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181
Query: 277 IVGSAPGFPHGI--------IDPIQELGELALSHGTCLHVDLCLGGFVLPFAK------- 321
+ + + ++E+ E+A HG + +D F K
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 241
Query: 322 -KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY 380
+ + ++S K +V R+ E
Sbjct: 242 NATIKEVIFDMYKYADALTMSA---KKDPLLNIGGLVAIRDNEEIFTLARQR-------- 290
Query: 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKA 415
P GGL AA++ +EG E
Sbjct: 291 CVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLH 325
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 40.7 bits (94), Expect = 3e-04
Identities = 22/278 (7%), Positives = 68/278 (24%), Gaps = 38/278 (13%)
Query: 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226
+S V + G + T G + + + ++G+ R
Sbjct: 74 RSYYALAESV----KNIFG-YQYTI-------PTHQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 227 PEMIIPVSAH-------------------SAYDKAAQYFNIKLWRVPVDKEFRADVKAIK 267
+M+ + ++ R +
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 268 KYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC-----LGGFVLPFAKK 322
+ I ++ G + ++ + +A + + +D A+
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 323 LGYPIPPFDFSV-QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGGLY 380
+ I + +++ K + P G + + + + + G
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFP 301
Query: 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIME 418
+ G L G + + + + +++
Sbjct: 302 TYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD 339
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 382
Score = 40.1 bits (92), Expect = 4e-04
Identities = 40/304 (13%), Positives = 75/304 (24%), Gaps = 29/304 (9%)
Query: 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKS-SRDYMRNKRGITRPEMIIP 232
V+ T A+ + + + GT + + NK +
Sbjct: 39 QRVLKNTRAVFKSAAASKSQPFV--LAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFS 96
Query: 233 VSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI 292
++ + + + V +
Sbjct: 97 DRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKA 156
Query: 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK 352
S T VD F+F GV K AP
Sbjct: 157 ISQAIKQTSPETFFVVDAVCSIGCE-----------EFEFDEWGVDFALTASQKAIGAPA 205
Query: 353 GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR---------------PGGLIAGA 397
G S+ L +R + + G + S P LI
Sbjct: 206 GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSL 265
Query: 398 WAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVN 457
AL + +EG + E+S+ + + +L + R + A G V + +
Sbjct: 266 DVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADPP 325
Query: 458 DIMS 461
D+++
Sbjct: 326 DVIA 329
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 39.8 bits (91), Expect = 6e-04
Identities = 30/304 (9%), Positives = 76/304 (25%), Gaps = 34/304 (11%)
Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234
++ AL AS G + G+ ++ + S+ ++ +
Sbjct: 37 QIRQQLTALAT----ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMV 92
Query: 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQE 294
+ A + D + + I+ ++ + G + I +
Sbjct: 93 EMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGAL 152
Query: 295 LGEL-ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG 353
+ + P D + + + +K G
Sbjct: 153 AHRYGKTYIVDAMS----------------SFGGIPMDIAALHIDYLISSANKCIQGVPG 196
Query: 354 TSVVLYRNREIRKHQ-------FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406
+ V+ R +++ + +W + P + AL L +
Sbjct: 197 FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK 256
Query: 407 EGYLENTKAIMEVSESIQKGIKEIPELFIIGRPDM---TIVAF---GSDVVDIFEVNDIM 460
EG + + ++ + ++ I AF E +
Sbjct: 257 EGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRL 316
Query: 461 SSKG 464
+G
Sbjct: 317 KEQG 320
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 39.7 bits (92), Expect = 6e-04
Identities = 32/278 (11%), Positives = 76/278 (27%), Gaps = 26/278 (9%)
Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234
+ I ++GN V G G T+ I V S M +++
Sbjct: 107 KTIKELHEVVGNAAAKDRYIVFGV---GVTQLIHGLVISLSPNMTATPDAPESKVVAHAP 163
Query: 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQE 294
+ + + +YF+ K + + N + + ++P P G++
Sbjct: 164 FYPVFREQTKYFDKK------GYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH--- 214
Query: 295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGT 354
A+ G D+ PI + ++S G +
Sbjct: 215 ----AVIKGCKSIYDMVYYWPHYT-------PIKYKADEDILLFTMS---KFTGHSGSRF 260
Query: 355 SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTK 414
L ++ + + +T+ + G + + + ++ K
Sbjct: 261 GWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFK 320
Query: 415 AIMEVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVD 452
+ E +I + + P + +
Sbjct: 321 KLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRP 358
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 39.0 bits (90), Expect = 0.001
Identities = 30/270 (11%), Positives = 59/270 (21%), Gaps = 41/270 (15%)
Query: 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227
+ E V L G + T G + L + + +
Sbjct: 76 NFYHLEKTV----KELFG-FKHIV-------PTHQGRGAENLLSQLAIK--PGQYVAGNM 121
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE---FRADVKAIKKYINRNTVLIVG----- 279
D+ + I +
Sbjct: 122 YFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLA 181
Query: 280 ---SAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP--------IP 328
+ G + ++ + E+A ++G + D F K+ I
Sbjct: 182 VTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIV 241
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
FS ++S K + + E+ V + G G
Sbjct: 242 HEMFSYADGCTMS---GKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEG-----MPSYGG 293
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIME 418
G + L Q Y+E+ +
Sbjct: 294 LAGRDMEAMAIGLREAMQYEYIEHRVKQVR 323
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 35.2 bits (79), Expect = 0.015
Identities = 28/302 (9%), Positives = 71/302 (23%), Gaps = 20/302 (6%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE 258
+ GT + L + + + + N
Sbjct: 59 LVPTGTAANALCLSAMT-----PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPA 113
Query: 259 FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP 318
+ D+ +++ + + P V +
Sbjct: 114 AKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM 173
Query: 319 FAKKLGYPIPPFDFSVQ-GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG 377
+ + S VD +G G
Sbjct: 174 DGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKR 233
Query: 378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIG 437
++S + + L + +L N + ++ + +G++ + + ++G
Sbjct: 234 AGHLSSKMR--------FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLG 285
Query: 438 RPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQR-PNSIHICVTLQH-VAVVDVFLRDL 495
+ I+ D + D + G+ + PN + + VD L +
Sbjct: 286 GTEANILFCRLDS----AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341
Query: 496 RE 497
R
Sbjct: 342 RL 343
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 31.4 bits (69), Expect = 0.27
Identities = 25/299 (8%), Positives = 63/299 (21%), Gaps = 18/299 (6%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEF 259
SGGT++ L+A + + + +
Sbjct: 58 ISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADI 117
Query: 260 RADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319
+ + + L+ S + L
Sbjct: 118 ESALHENRSEHMVIPKLVYISNTTEVGTQYTKQEL-------EDISASCKEHGLYLFLDG 170
Query: 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL 379
A+ P + + D+ G G + A
Sbjct: 171 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQR- 229
Query: 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGIKEIPELFIIGRP 439
G+ + + + E +++ ++ G+ E + +
Sbjct: 230 -------GALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPS 281
Query: 440 DMTIVAFGSDVVDIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQH-VAVVDVFLRDLRE 497
+ + I E+N+ + +C + F+ L+
Sbjct: 282 ASNQLFPILENTMIAELNNDFDMYTVEPLKDG-TCIMRLCTSWATEEKECHRFVEVLKR 339
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 28.4 bits (62), Expect = 2.6
Identities = 16/114 (14%), Positives = 26/114 (22%)
Query: 203 GTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRAD 262
G LL + + E I S
Sbjct: 97 GYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTH 156
Query: 263 VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
+ + ++V G P+ E+ ++ H L VD G V
Sbjct: 157 LARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGV 210
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize
(Zea mays) [TaxId: 4577]}
Length = 136
Score = 26.3 bits (57), Expect = 6.3
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 421 ESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWH 466
E ++KG I + +PD+ ++ GS++ + D + +G
Sbjct: 6 EGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKT 51
>d1xkpc1 d.198.1.1 (C:2-127) Chaperone protein YscB {Yersinia pestis
[TaxId: 632]}
Length = 126
Score = 26.0 bits (57), Expect = 6.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVL 358
A LG PF QGV +++D H LAP G+ +VL
Sbjct: 8 AASLG--RKPFVADKQGVYRLTIDKHLVMLAPHGSELVL 44
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase
TM1293 {Thermotoga maritima [TaxId: 2336]}
Length = 208
Score = 26.6 bits (57), Expect = 7.6
Identities = 13/131 (9%), Positives = 43/131 (32%), Gaps = 10/131 (7%)
Query: 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG------IIDPI 292
+++ + + W + + ++++A+K + + +G G ++P
Sbjct: 6 FERFVNEY--ERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIKIGVEPS 63
Query: 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK 352
+ + E ++ + V + + + + ++ L
Sbjct: 64 ERMAE--IARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKG 121
Query: 353 GTSVVLYRNRE 363
G +V +RE
Sbjct: 122 GYLIVGIVDRE 132
>d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia
aerocolonigenes [TaxId: 68170]}
Length = 302
Score = 26.4 bits (58), Expect = 8.8
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 204 TESILLAVKSSRDYMRNKRG------ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK 257
+++ V D+M+ RG I RPE II + K A + VP
Sbjct: 205 GRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIILGHQDNDPKVANDLGL---PVPRKG 261
Query: 258 EF-RADVKAIKKYINRNTVLIVGSA 281
+ A V + R T I G
Sbjct: 262 QVVAARVVPADEGDQRQTAEIQGRR 286
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 25.6 bits (55), Expect = 10.0
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 418 EVSESIQKGIKEIPELFIIGRPDMTIVAFGSDVVDIFEVNDIMSSKGWH 466
E +I +G + + G+P++ +A GS+V + ++++G
Sbjct: 4 EQLANIARGGYVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVK 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,006,053
Number of extensions: 95185
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 21
Length of query: 541
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 451
Effective length of database: 1,171,896
Effective search space: 528525096
Effective search space used: 528525096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)