Query 009182
Match_columns 541
No_of_seqs 256 out of 863
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 21:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0212 Uncharacterized conser 100.0 9E-126 2E-130 964.3 47.4 507 27-534 79-592 (675)
2 PF11916 Vac14_Fig4_bd: Vacuol 100.0 3.3E-67 7.2E-72 475.5 18.3 168 368-535 1-168 (182)
3 KOG2023 Nuclear transport rece 100.0 8.3E-40 1.8E-44 339.4 27.6 490 27-530 85-687 (885)
4 KOG0212 Uncharacterized conser 100.0 1.1E-30 2.4E-35 268.0 34.9 477 35-527 3-509 (675)
5 KOG2171 Karyopherin (importin) 99.9 2.1E-19 4.7E-24 199.3 35.3 314 28-348 75-417 (1075)
6 PF12755 Vac14_Fab1_bd: Vacuol 99.8 1.8E-19 3.8E-24 150.7 10.6 77 26-102 21-97 (97)
7 KOG1242 Protein containing ada 99.8 1.1E-16 2.3E-21 168.9 32.9 391 5-403 69-501 (569)
8 KOG2171 Karyopherin (importin) 99.8 2.1E-16 4.6E-21 175.7 36.5 373 24-399 151-563 (1075)
9 KOG0915 Uncharacterized conser 99.8 3.6E-16 7.8E-21 176.3 31.5 315 4-365 976-1324(1702)
10 KOG2023 Nuclear transport rece 99.8 8.6E-16 1.9E-20 161.3 32.2 353 30-383 213-773 (885)
11 KOG1242 Protein containing ada 99.7 1.6E-16 3.5E-21 167.4 22.7 320 33-366 175-545 (569)
12 PRK09687 putative lyase; Provi 99.7 4E-15 8.7E-20 149.3 24.5 258 28-346 19-279 (280)
13 KOG0211 Protein phosphatase 2A 99.6 1.1E-13 2.4E-18 153.0 29.3 343 13-368 297-646 (759)
14 PRK13800 putative oxidoreducta 99.6 5E-14 1.1E-18 163.1 27.6 265 33-373 622-887 (897)
15 KOG0915 Uncharacterized conser 99.6 1.2E-13 2.7E-18 156.2 29.6 359 26-389 1033-1431(1702)
16 KOG1241 Karyopherin (importin) 99.6 4.3E-14 9.3E-19 150.9 22.2 334 31-370 89-463 (859)
17 PRK09687 putative lyase; Provi 99.6 1.4E-12 3.1E-17 130.9 25.4 235 75-365 25-261 (280)
18 KOG1824 TATA-binding protein-i 99.6 1.2E-10 2.6E-15 127.1 40.8 312 15-334 22-490 (1233)
19 PRK13800 putative oxidoreducta 99.5 9.8E-13 2.1E-17 152.4 26.3 245 31-346 651-896 (897)
20 PF01602 Adaptin_N: Adaptin N 99.4 5.5E-11 1.2E-15 130.4 29.1 346 30-408 77-431 (526)
21 KOG0213 Splicing factor 3b, su 99.4 9.6E-11 2.1E-15 124.8 29.2 368 27-402 548-971 (1172)
22 KOG1241 Karyopherin (importin) 99.4 3.3E-09 7E-14 114.2 40.8 379 27-420 212-732 (859)
23 KOG1824 TATA-binding protein-i 99.4 5.1E-10 1.1E-14 122.3 34.5 400 11-421 239-722 (1233)
24 PF01602 Adaptin_N: Adaptin N 99.4 2.6E-10 5.7E-15 125.0 32.9 348 27-403 37-389 (526)
25 KOG0213 Splicing factor 3b, su 99.4 2.5E-09 5.4E-14 114.3 32.7 376 12-396 701-1118(1172)
26 COG5215 KAP95 Karyopherin (imp 99.3 6.5E-09 1.4E-13 108.5 34.0 312 31-348 93-436 (858)
27 PLN03200 cellulose synthase-in 99.3 2.9E-09 6.3E-14 127.9 30.2 352 34-393 406-772 (2102)
28 KOG0166 Karyopherin (importin) 99.3 6E-09 1.3E-13 110.1 28.7 392 34-483 68-487 (514)
29 PLN03200 cellulose synthase-in 99.2 1.1E-09 2.5E-14 131.3 25.8 348 31-388 487-863 (2102)
30 KOG0211 Protein phosphatase 2A 99.2 1.2E-08 2.6E-13 113.5 32.0 362 30-401 235-602 (759)
31 PTZ00429 beta-adaptin; Provisi 99.2 1.8E-07 4E-12 105.1 41.5 217 33-264 106-324 (746)
32 COG5181 HSH155 U2 snRNP splice 99.2 1.1E-09 2.4E-14 114.9 21.3 363 27-402 241-776 (975)
33 PF10508 Proteasom_PSMB: Prote 99.2 1.8E-08 4E-13 109.6 30.0 328 30-366 75-443 (503)
34 PTZ00429 beta-adaptin; Provisi 99.1 5.1E-07 1.1E-11 101.5 37.7 358 37-422 37-398 (746)
35 COG5215 KAP95 Karyopherin (imp 99.1 4.9E-07 1.1E-11 94.8 34.0 337 27-369 257-693 (858)
36 PF12755 Vac14_Fab1_bd: Vacuol 99.1 3.2E-10 6.9E-15 95.0 8.5 95 88-184 1-96 (97)
37 PF12348 CLASP_N: CLASP N term 99.1 2.9E-09 6.4E-14 103.9 15.3 192 73-269 7-209 (228)
38 COG5181 HSH155 U2 snRNP splice 99.1 2.6E-07 5.6E-12 97.5 29.1 313 14-348 508-869 (975)
39 PF12348 CLASP_N: CLASP N term 99.0 8.9E-09 1.9E-13 100.5 16.5 155 28-188 49-210 (228)
40 PF10508 Proteasom_PSMB: Prote 99.0 7E-07 1.5E-11 97.4 31.8 259 78-349 43-319 (503)
41 KOG0166 Karyopherin (importin) 99.0 9E-09 2E-13 108.8 15.6 351 32-402 109-483 (514)
42 KOG4224 Armadillo repeat prote 98.9 1.2E-07 2.6E-12 94.7 18.2 328 30-361 83-458 (550)
43 PF12460 MMS19_C: RNAPII trans 98.8 8.8E-06 1.9E-10 86.8 32.6 330 27-363 33-413 (415)
44 TIGR02270 conserved hypothetic 98.8 6.9E-07 1.5E-11 94.2 22.3 241 32-349 54-296 (410)
45 COG1413 FOG: HEAT repeat [Ener 98.8 2.4E-06 5.3E-11 88.3 25.1 248 32-349 43-304 (335)
46 KOG0891 DNA-dependent protein 98.8 3.6E-06 7.8E-11 103.2 29.4 451 35-515 484-997 (2341)
47 KOG1943 Beta-tubulin folding c 98.7 5.7E-05 1.2E-09 85.0 34.5 463 25-501 334-900 (1133)
48 KOG1240 Protein kinase contain 98.7 5.6E-06 1.2E-10 93.5 26.0 280 27-335 457-767 (1431)
49 KOG1240 Protein kinase contain 98.6 3.1E-06 6.6E-11 95.6 21.6 290 33-348 423-724 (1431)
50 KOG2259 Uncharacterized conser 98.6 1.2E-05 2.7E-10 86.0 24.8 268 73-365 198-492 (823)
51 KOG4224 Armadillo repeat prote 98.6 1.8E-06 3.8E-11 86.5 16.1 268 33-309 209-494 (550)
52 KOG1248 Uncharacterized conser 98.6 7.3E-05 1.6E-09 85.0 30.4 348 45-397 530-910 (1176)
53 KOG1059 Vesicle coat complex A 98.5 0.00029 6.3E-09 76.4 32.0 197 72-288 143-380 (877)
54 KOG1967 DNA repair/transcripti 98.5 3.4E-06 7.3E-11 93.2 17.1 191 73-264 815-1022(1030)
55 KOG1062 Vesicle coat complex A 98.5 9.9E-05 2.1E-09 80.9 26.8 273 33-368 108-397 (866)
56 KOG1060 Vesicle coat complex A 98.4 0.00026 5.6E-09 77.5 29.1 125 277-402 320-477 (968)
57 KOG1061 Vesicle coat complex A 98.4 0.00034 7.5E-09 76.7 28.9 344 33-406 87-438 (734)
58 COG1413 FOG: HEAT repeat [Ener 98.4 0.00011 2.3E-09 76.1 24.2 247 30-346 72-332 (335)
59 KOG2259 Uncharacterized conser 98.4 1.5E-05 3.1E-10 85.4 17.4 260 35-318 201-521 (823)
60 TIGR02270 conserved hypothetic 98.3 0.00016 3.4E-09 76.5 24.2 240 72-383 53-294 (410)
61 KOG1248 Uncharacterized conser 98.3 0.0011 2.3E-08 75.9 31.4 285 73-362 612-913 (1176)
62 KOG1060 Vesicle coat complex A 98.2 0.0027 5.9E-08 69.7 31.0 312 35-370 111-518 (968)
63 cd00020 ARM Armadillo/beta-cat 98.2 6.9E-06 1.5E-10 70.8 8.8 111 32-142 7-119 (120)
64 PF12460 MMS19_C: RNAPII trans 98.2 0.0011 2.3E-08 70.9 27.0 213 111-328 186-414 (415)
65 KOG1061 Vesicle coat complex A 98.1 0.00029 6.2E-09 77.3 21.5 334 27-384 116-527 (734)
66 PF13513 HEAT_EZ: HEAT-like re 98.1 4.7E-06 1E-10 62.1 5.4 55 293-347 1-55 (55)
67 COG5064 SRP1 Karyopherin (impo 98.1 3.1E-05 6.7E-10 77.1 12.0 222 33-259 158-391 (526)
68 KOG1058 Vesicle coat complex C 98.1 0.00087 1.9E-08 73.1 22.7 321 21-381 124-458 (948)
69 PF13646 HEAT_2: HEAT repeats; 98.1 2.3E-05 5E-10 64.0 8.6 85 34-139 1-88 (88)
70 PF12717 Cnd1: non-SMC mitotic 98.0 0.00034 7.4E-09 65.6 17.3 93 168-267 1-93 (178)
71 KOG1820 Microtubule-associated 98.0 0.00025 5.5E-09 80.1 18.8 198 27-231 248-449 (815)
72 KOG1943 Beta-tubulin folding c 98.0 0.056 1.2E-06 61.8 36.4 318 17-348 197-610 (1133)
73 COG5096 Vesicle coat complex, 98.0 0.019 4.1E-07 64.4 32.5 183 41-245 28-212 (757)
74 KOG1991 Nuclear transport rece 98.0 0.026 5.6E-07 63.9 33.4 315 13-333 328-695 (1010)
75 KOG2025 Chromosome condensatio 98.0 0.012 2.6E-07 64.2 29.5 190 10-221 56-260 (892)
76 KOG1967 DNA repair/transcripti 98.0 6.2E-05 1.3E-09 83.5 12.0 172 5-178 833-1018(1030)
77 PF11865 DUF3385: Domain of un 97.9 4.2E-05 9.2E-10 70.4 8.7 110 275-387 6-156 (160)
78 KOG1062 Vesicle coat complex A 97.9 0.0016 3.5E-08 71.6 21.7 244 30-311 140-417 (866)
79 KOG1820 Microtubule-associated 97.9 0.00055 1.2E-08 77.5 18.7 191 73-269 253-446 (815)
80 cd00020 ARM Armadillo/beta-cat 97.9 7E-05 1.5E-09 64.4 9.3 110 74-183 8-119 (120)
81 COG5240 SEC21 Vesicle coat com 97.9 0.0023 5.1E-08 68.0 21.6 127 71-210 262-389 (898)
82 COG5096 Vesicle coat complex, 97.9 0.011 2.5E-07 66.1 27.6 298 33-366 93-404 (757)
83 KOG2032 Uncharacterized conser 97.8 0.034 7.4E-07 58.6 29.1 239 110-348 254-530 (533)
84 PF12717 Cnd1: non-SMC mitotic 97.8 0.0011 2.3E-08 62.3 16.6 111 250-368 1-113 (178)
85 KOG2025 Chromosome condensatio 97.8 0.011 2.4E-07 64.5 25.8 206 70-305 82-291 (892)
86 PF13513 HEAT_EZ: HEAT-like re 97.8 4.1E-05 8.9E-10 57.0 5.4 55 128-182 1-55 (55)
87 PF02985 HEAT: HEAT repeat; I 97.8 2.8E-05 6E-10 50.7 3.4 30 33-62 1-30 (31)
88 PF13646 HEAT_2: HEAT repeats; 97.7 0.00041 8.9E-09 56.6 10.3 85 158-262 2-88 (88)
89 COG5064 SRP1 Karyopherin (impo 97.6 0.00061 1.3E-08 68.1 11.8 227 116-349 159-398 (526)
90 KOG2032 Uncharacterized conser 97.6 0.01 2.2E-07 62.4 21.2 267 27-309 253-532 (533)
91 KOG2956 CLIP-associating prote 97.6 0.0024 5.2E-08 66.6 15.8 154 27-187 324-480 (516)
92 PF05804 KAP: Kinesin-associat 97.6 0.022 4.7E-07 64.1 24.7 124 34-168 252-385 (708)
93 KOG1992 Nuclear export recepto 97.5 0.19 4.1E-06 56.2 29.8 274 49-326 379-686 (960)
94 COG5240 SEC21 Vesicle coat com 97.5 0.073 1.6E-06 57.1 25.6 360 35-424 68-445 (898)
95 KOG4653 Uncharacterized conser 97.5 0.0065 1.4E-07 67.5 18.4 219 122-348 735-963 (982)
96 KOG1020 Sister chromatid cohes 97.5 0.42 9E-06 56.8 33.4 149 214-370 794-945 (1692)
97 KOG1020 Sister chromatid cohes 97.4 0.19 4.1E-06 59.5 30.2 281 71-368 814-1133(1692)
98 KOG2956 CLIP-associating prote 97.4 0.0085 1.8E-07 62.6 17.4 194 125-325 298-495 (516)
99 KOG1992 Nuclear export recepto 97.4 0.14 3.1E-06 57.1 26.6 332 32-370 88-562 (960)
100 PF04826 Arm_2: Armadillo-like 97.3 0.0062 1.3E-07 60.4 15.0 176 33-215 55-252 (254)
101 PF05804 KAP: Kinesin-associat 97.3 0.097 2.1E-06 59.0 26.0 307 31-350 289-650 (708)
102 KOG2274 Predicted importin 9 [ 97.3 0.45 9.8E-06 53.8 33.9 262 81-348 499-779 (1005)
103 KOG1525 Sister chromatid cohes 97.3 0.067 1.5E-06 63.5 25.2 336 40-389 58-454 (1266)
104 KOG0414 Chromosome condensatio 97.3 0.01 2.2E-07 68.1 17.6 164 194-370 917-1106(1251)
105 PF05918 API5: Apoptosis inhib 97.3 0.13 2.9E-06 56.1 25.4 297 73-389 23-349 (556)
106 KOG1059 Vesicle coat complex A 97.3 0.44 9.6E-06 52.6 39.1 198 155-366 144-381 (877)
107 PF04826 Arm_2: Armadillo-like 97.3 0.0064 1.4E-07 60.2 14.3 180 35-226 15-206 (254)
108 KOG2274 Predicted importin 9 [ 97.2 0.59 1.3E-05 52.9 34.9 295 154-456 489-812 (1005)
109 PLN03076 ARF guanine nucleotid 97.2 0.35 7.5E-06 59.9 30.3 319 49-367 1109-1513(1780)
110 KOG1993 Nuclear transport rece 97.1 0.13 2.9E-06 57.1 23.5 301 42-355 497-819 (978)
111 PF05004 IFRD: Interferon-rela 97.1 0.026 5.6E-07 57.7 17.2 192 120-311 49-260 (309)
112 KOG4653 Uncharacterized conser 97.1 0.039 8.6E-07 61.6 19.3 227 34-268 729-966 (982)
113 PF05004 IFRD: Interferon-rela 97.1 0.045 9.8E-07 56.0 18.9 187 157-348 45-256 (309)
114 KOG1078 Vesicle coat complex C 97.1 0.21 4.5E-06 55.6 23.9 254 111-384 242-531 (865)
115 PF08623 TIP120: TATA-binding 97.0 0.0073 1.6E-07 55.7 11.2 127 231-361 3-166 (169)
116 KOG2021 Nuclear mRNA export fa 97.0 0.45 9.9E-06 52.8 26.0 271 126-400 205-585 (980)
117 KOG1525 Sister chromatid cohes 97.0 0.52 1.1E-05 56.3 28.6 150 110-266 255-405 (1266)
118 KOG0567 HEAT repeat-containing 97.0 0.037 8.1E-07 54.0 15.5 193 33-263 68-277 (289)
119 PF05918 API5: Apoptosis inhib 96.9 0.23 5E-06 54.2 23.1 275 19-314 46-351 (556)
120 PF08167 RIX1: rRNA processing 96.9 0.03 6.4E-07 51.9 14.2 135 110-246 21-164 (165)
121 PF10521 DUF2454: Protein of u 96.9 0.019 4E-07 58.1 14.0 144 25-168 112-278 (282)
122 KOG0392 SNF2 family DNA-depend 96.9 0.011 2.3E-07 68.2 13.1 167 49-268 750-927 (1549)
123 KOG1077 Vesicle coat complex A 96.9 0.48 1E-05 52.2 24.7 266 42-341 158-466 (938)
124 PF10274 ParcG: Parkin co-regu 96.9 0.017 3.7E-07 53.8 11.9 75 274-348 33-108 (183)
125 COG5218 YCG1 Chromosome conden 96.9 0.024 5.2E-07 60.7 14.4 140 28-187 87-228 (885)
126 KOG1058 Vesicle coat complex C 96.8 1.1 2.5E-05 49.8 29.8 271 73-370 99-410 (948)
127 KOG1991 Nuclear transport rece 96.8 1.4 3E-05 50.5 30.9 292 6-304 476-796 (1010)
128 COG5218 YCG1 Chromosome conden 96.8 0.028 6.1E-07 60.2 14.4 174 68-260 86-260 (885)
129 KOG4413 26S proteasome regulat 96.8 0.71 1.5E-05 46.6 23.7 309 31-349 81-439 (524)
130 KOG0168 Putative ubiquitin fus 96.8 0.17 3.6E-06 56.7 20.3 197 198-396 169-376 (1051)
131 PF10274 ParcG: Parkin co-regu 96.7 0.0073 1.6E-07 56.3 8.6 94 192-285 34-130 (183)
132 KOG4535 HEAT and armadillo rep 96.7 0.36 7.8E-06 51.0 21.5 305 43-348 7-461 (728)
133 COG5656 SXM1 Importin, protein 96.7 1.4 3.1E-05 49.0 35.1 354 11-374 324-744 (970)
134 KOG1078 Vesicle coat complex C 96.7 0.16 3.5E-06 56.4 19.7 274 23-317 236-541 (865)
135 PF13251 DUF4042: Domain of un 96.6 0.027 5.9E-07 52.7 11.8 139 47-185 1-175 (182)
136 PF08167 RIX1: rRNA processing 96.6 0.14 3.1E-06 47.3 16.5 137 27-200 20-159 (165)
137 PF14664 RICTOR_N: Rapamycin-i 96.6 0.35 7.6E-06 50.7 21.2 232 109-348 20-268 (371)
138 PLN03076 ARF guanine nucleotid 96.6 0.25 5.5E-06 61.0 22.6 237 29-265 1179-1488(1780)
139 KOG2062 26S proteasome regulat 96.6 0.057 1.2E-06 59.4 15.2 176 35-231 522-701 (929)
140 KOG0413 Uncharacterized conser 96.6 0.58 1.3E-05 53.2 23.0 110 279-396 968-1084(1529)
141 PF02985 HEAT: HEAT repeat; I 96.6 0.0039 8.5E-08 40.5 4.0 29 156-184 1-29 (31)
142 KOG1949 Uncharacterized conser 96.5 0.042 9.1E-07 60.1 13.6 145 116-262 176-327 (1005)
143 PF14500 MMS19_N: Dos2-interac 96.5 0.44 9.4E-06 47.6 19.9 203 37-242 4-255 (262)
144 KOG0414 Chromosome condensatio 96.5 2.7 5.8E-05 49.2 34.8 106 81-187 320-431 (1251)
145 KOG0392 SNF2 family DNA-depend 96.4 0.035 7.6E-07 64.2 13.0 232 109-348 72-324 (1549)
146 KOG4413 26S proteasome regulat 96.4 0.33 7.1E-06 48.9 18.0 275 132-419 61-375 (524)
147 KOG2062 26S proteasome regulat 96.3 0.069 1.5E-06 58.8 13.8 152 80-252 526-680 (929)
148 KOG4524 Uncharacterized conser 96.3 3 6.6E-05 47.8 27.9 229 134-366 568-899 (1014)
149 KOG0567 HEAT repeat-containing 96.3 0.64 1.4E-05 45.6 18.8 190 157-375 69-270 (289)
150 KOG1993 Nuclear transport rece 96.1 3.2 7E-05 46.7 32.3 212 152-366 523-750 (978)
151 COG5116 RPN2 26S proteasome re 96.1 0.075 1.6E-06 56.9 12.6 160 37-217 521-685 (926)
152 KOG1293 Proteins containing ar 96.1 3 6.5E-05 45.9 26.7 133 251-383 391-531 (678)
153 COG5116 RPN2 26S proteasome re 96.1 0.11 2.4E-06 55.6 13.4 159 72-251 514-676 (926)
154 PF08569 Mo25: Mo25-like; Int 96.0 1.2 2.6E-05 46.0 21.0 222 155-384 76-331 (335)
155 KOG1243 Protein kinase [Genera 96.0 0.039 8.4E-07 60.6 10.2 188 70-268 327-517 (690)
156 PF12719 Cnd3: Nuclear condens 96.0 0.54 1.2E-05 47.8 18.0 126 235-365 24-161 (298)
157 KOG1293 Proteins containing ar 96.0 0.22 4.7E-06 54.4 15.5 153 30-184 374-533 (678)
158 PF05536 Neurochondrin: Neuroc 95.9 3.8 8.2E-05 45.4 28.9 179 87-269 71-264 (543)
159 KOG0168 Putative ubiquitin fus 95.8 1.2 2.7E-05 50.1 20.7 139 116-254 169-352 (1051)
160 PF14500 MMS19_N: Dos2-interac 95.7 2.4 5.3E-05 42.2 21.7 238 78-325 4-255 (262)
161 KOG0889 Histone acetyltransfer 95.7 4.7 0.0001 52.3 27.3 431 28-487 1029-1526(3550)
162 KOG2933 Uncharacterized conser 95.7 0.22 4.7E-06 49.9 13.0 126 278-403 87-217 (334)
163 PF12231 Rif1_N: Rap1-interact 95.7 3.5 7.5E-05 43.4 26.0 213 128-348 60-302 (372)
164 PF01347 Vitellogenin_N: Lipop 95.6 1.2 2.5E-05 50.2 20.7 162 155-343 431-616 (618)
165 PF11865 DUF3385: Domain of un 95.6 0.12 2.5E-06 47.6 10.2 116 152-268 7-159 (160)
166 PF12719 Cnd3: Nuclear condens 95.5 3.4 7.3E-05 42.0 24.6 170 152-330 23-207 (298)
167 KOG1949 Uncharacterized conser 95.5 0.39 8.5E-06 52.8 15.0 146 35-182 177-329 (1005)
168 KOG2933 Uncharacterized conser 95.5 0.22 4.8E-06 49.8 12.2 145 27-178 124-271 (334)
169 PF03378 CAS_CSE1: CAS/CSE pro 95.5 1.1 2.4E-05 48.0 18.6 220 145-369 16-255 (435)
170 KOG2081 Nuclear transport regu 95.4 5.1 0.00011 43.4 29.7 259 114-386 199-496 (559)
171 KOG4535 HEAT and armadillo rep 95.4 2.8 6.1E-05 44.5 20.3 339 17-367 280-657 (728)
172 PF08506 Cse1: Cse1; InterPro 95.3 0.28 6E-06 51.5 13.3 211 128-343 110-369 (370)
173 KOG2160 Armadillo/beta-catenin 95.3 1.1 2.3E-05 46.0 16.6 137 206-349 93-240 (342)
174 KOG2160 Armadillo/beta-catenin 95.3 1.7 3.7E-05 44.5 18.1 183 2-187 54-243 (342)
175 COG5098 Chromosome condensatio 95.2 0.23 4.9E-06 54.5 12.1 190 195-398 891-1086(1128)
176 PF10521 DUF2454: Protein of u 95.2 0.7 1.5E-05 46.7 15.3 170 128-333 93-278 (282)
177 KOG2149 Uncharacterized conser 94.9 0.35 7.7E-06 50.1 12.3 128 35-162 61-189 (393)
178 PF03378 CAS_CSE1: CAS/CSE pro 94.9 3.3 7.2E-05 44.4 20.1 232 113-348 25-271 (435)
179 PF10363 DUF2435: Protein of u 94.7 0.15 3.2E-06 42.3 7.5 84 157-248 5-88 (92)
180 PF10363 DUF2435: Protein of u 94.7 0.22 4.9E-06 41.2 8.4 72 74-147 4-76 (92)
181 KOG0803 Predicted E3 ubiquitin 94.6 1.4 3.1E-05 52.8 17.8 219 116-334 43-289 (1312)
182 smart00638 LPD_N Lipoprotein N 94.4 3.6 7.9E-05 45.8 20.0 136 195-348 392-544 (574)
183 KOG2021 Nuclear mRNA export fa 94.3 11 0.00025 42.3 26.6 204 156-364 336-580 (980)
184 PF08623 TIP120: TATA-binding 94.2 0.46 1E-05 43.9 10.1 96 150-248 4-117 (169)
185 KOG1243 Protein kinase [Genera 94.1 0.74 1.6E-05 50.9 13.1 145 195-349 251-398 (690)
186 PF08767 CRM1_C: CRM1 C termin 94.1 5.8 0.00013 40.8 19.2 180 129-308 42-247 (319)
187 PF13251 DUF4042: Domain of un 94.0 0.56 1.2E-05 44.0 10.5 117 295-424 2-134 (182)
188 KOG1517 Guanine nucleotide bin 94.0 2.2 4.9E-05 49.2 16.6 235 90-359 487-743 (1387)
189 PF04118 Dopey_N: Dopey, N-ter 93.9 8.4 0.00018 39.3 21.6 199 158-365 57-280 (307)
190 PF12530 DUF3730: Protein of u 93.8 7.1 0.00015 38.2 18.4 169 198-385 2-182 (234)
191 KOG1822 Uncharacterized conser 93.7 5.6 0.00012 48.9 20.0 225 36-264 880-1125(2067)
192 KOG2149 Uncharacterized conser 93.7 0.62 1.3E-05 48.4 10.9 133 116-248 60-193 (393)
193 cd08050 TAF6 TATA Binding Prot 93.6 1.1 2.3E-05 46.7 12.9 142 157-308 180-340 (343)
194 KOG2022 Nuclear transport rece 93.6 17 0.00036 41.7 28.8 153 211-368 481-644 (982)
195 cd00256 VATPase_H VATPase_H, r 93.5 12 0.00027 39.9 24.0 300 45-348 67-424 (429)
196 PF08389 Xpo1: Exportin 1-like 93.4 1.1 2.3E-05 39.9 11.1 127 47-179 3-148 (148)
197 PF01603 B56: Protein phosphat 93.4 3.7 8E-05 43.8 16.8 224 27-267 127-371 (409)
198 PF13001 Ecm29: Proteasome sta 93.3 1.8 4E-05 47.4 14.7 219 73-307 237-487 (501)
199 KOG0889 Histone acetyltransfer 93.3 12 0.00026 49.0 22.7 296 74-370 985-1332(3550)
200 cd08050 TAF6 TATA Binding Prot 93.3 1.8 3.9E-05 44.9 13.9 145 65-223 174-338 (343)
201 KOG2549 Transcription initiati 93.2 6.5 0.00014 42.6 17.8 188 66-266 204-415 (576)
202 PF12830 Nipped-B_C: Sister ch 93.1 3.8 8.3E-05 38.6 14.7 65 33-101 9-74 (187)
203 COG5098 Chromosome condensatio 93.1 4.5 9.8E-05 44.9 16.6 105 80-185 306-416 (1128)
204 PF12530 DUF3730: Protein of u 92.9 10 0.00022 37.1 20.4 202 116-334 2-217 (234)
205 PF08767 CRM1_C: CRM1 C termin 92.6 14 0.0003 38.0 20.6 158 111-269 64-247 (319)
206 KOG1566 Conserved protein Mo25 92.5 6 0.00013 40.0 15.4 220 157-384 81-334 (342)
207 PF01347 Vitellogenin_N: Lipop 92.4 11 0.00025 42.2 19.9 166 236-414 430-615 (618)
208 KOG1077 Vesicle coat complex A 92.3 23 0.00049 39.7 31.5 395 24-468 103-543 (938)
209 PF08569 Mo25: Mo25-like; Int 92.3 16 0.00034 37.9 20.4 192 29-227 73-285 (335)
210 PF03224 V-ATPase_H_N: V-ATPas 92.2 4.4 9.6E-05 41.4 15.0 198 28-230 55-274 (312)
211 smart00638 LPD_N Lipoprotein N 92.2 16 0.00036 40.6 20.6 163 116-303 359-540 (574)
212 KOG2137 Protein kinase [Signal 92.1 3.7 7.9E-05 45.8 14.7 125 12-143 370-496 (700)
213 COG5656 SXM1 Importin, protein 92.0 25 0.00055 39.7 30.7 285 21-314 448-763 (970)
214 KOG1851 Uncharacterized conser 91.8 9.1 0.0002 46.3 18.0 156 109-269 1521-1681(1710)
215 PF12830 Nipped-B_C: Sister ch 91.7 4.5 9.7E-05 38.1 13.3 83 279-365 8-92 (187)
216 PF08064 UME: UME (NUC010) dom 91.6 2.5 5.4E-05 36.0 10.3 68 290-359 26-95 (107)
217 PF03224 V-ATPase_H_N: V-ATPas 91.6 1.5 3.3E-05 44.9 10.7 180 167-349 69-269 (312)
218 KOG2137 Protein kinase [Signal 91.5 10 0.00022 42.4 17.2 146 195-348 348-495 (700)
219 PF04118 Dopey_N: Dopey, N-ter 91.5 18 0.00039 36.9 20.4 159 89-254 71-242 (307)
220 COG5095 TAF6 Transcription ini 91.4 6.1 0.00013 39.6 13.9 152 59-223 186-357 (450)
221 KOG1877 Putative transmembrane 91.1 11 0.00023 43.2 17.2 251 112-366 50-349 (819)
222 KOG2973 Uncharacterized conser 90.9 20 0.00042 36.4 18.4 52 118-169 7-58 (353)
223 KOG1517 Guanine nucleotide bin 90.9 3.7 8E-05 47.6 13.3 111 114-224 599-731 (1387)
224 PF08064 UME: UME (NUC010) dom 90.5 0.85 1.8E-05 38.9 6.4 61 208-270 27-87 (107)
225 KOG3961 Uncharacterized conser 90.2 0.76 1.6E-05 43.6 6.2 93 193-285 111-205 (262)
226 PF00514 Arm: Armadillo/beta-c 90.1 0.56 1.2E-05 32.2 4.1 30 319-348 11-40 (41)
227 KOG0891 DNA-dependent protein 90.1 71 0.0015 41.4 26.1 193 34-227 7-206 (2341)
228 PF08506 Cse1: Cse1; InterPro 89.9 6.7 0.00015 41.2 13.8 130 46-179 225-370 (370)
229 COG5095 TAF6 Transcription ini 89.8 5.8 0.00013 39.8 12.2 146 151-311 197-362 (450)
230 COG5032 TEL1 Phosphatidylinosi 89.5 30 0.00064 44.7 21.3 252 7-266 247-510 (2105)
231 KOG0413 Uncharacterized conser 89.0 52 0.0011 38.4 25.1 184 158-348 475-684 (1529)
232 cd03568 VHS_STAM VHS domain fa 88.6 7.6 0.00017 35.0 11.4 77 113-189 36-115 (144)
233 PF00514 Arm: Armadillo/beta-c 88.4 0.79 1.7E-05 31.4 3.9 29 32-60 12-40 (41)
234 KOG3961 Uncharacterized conser 88.4 1.2 2.7E-05 42.3 6.2 92 148-243 111-205 (262)
235 PF01603 B56: Protein phosphat 88.4 17 0.00036 38.8 15.7 227 112-364 131-386 (409)
236 KOG0946 ER-Golgi vesicle-tethe 88.1 54 0.0012 37.4 28.1 298 31-332 121-536 (970)
237 PF07571 DUF1546: Protein of u 88.0 2.7 5.8E-05 34.8 7.4 60 42-101 16-78 (92)
238 KOG1822 Uncharacterized conser 87.9 83 0.0018 39.4 29.2 222 123-348 885-1126(2067)
239 KOG2081 Nuclear transport regu 87.2 50 0.0011 36.1 25.9 146 169-324 366-511 (559)
240 KOG2122 Beta-catenin-binding p 87.0 32 0.00069 41.9 17.4 66 319-384 529-600 (2195)
241 PF12765 Cohesin_HEAT: HEAT re 87.0 0.96 2.1E-05 31.5 3.6 41 302-344 2-42 (42)
242 KOG2549 Transcription initiati 86.9 22 0.00047 38.7 15.1 165 157-331 209-394 (576)
243 KOG2022 Nuclear transport rece 86.7 67 0.0015 37.1 28.7 167 35-205 465-641 (982)
244 KOG0946 ER-Golgi vesicle-tethe 86.7 65 0.0014 36.8 35.6 348 25-383 19-434 (970)
245 cd03568 VHS_STAM VHS domain fa 86.4 13 0.00028 33.5 11.6 84 17-100 22-109 (144)
246 cd03561 VHS VHS domain family; 86.0 19 0.00041 31.8 12.4 76 113-188 36-116 (133)
247 smart00802 UME Domain in UVSB 85.9 2.1 4.6E-05 36.5 5.9 60 209-270 28-87 (107)
248 cd00256 VATPase_H VATPase_H, r 85.5 56 0.0012 35.0 18.1 144 244-387 108-260 (429)
249 KOG0803 Predicted E3 ubiquitin 85.4 30 0.00066 42.0 16.9 171 35-209 86-289 (1312)
250 PF13001 Ecm29: Proteasome sta 85.2 64 0.0014 35.4 30.7 312 17-348 8-442 (501)
251 PF08161 NUC173: NUC173 domain 85.2 26 0.00057 33.3 13.6 160 56-223 24-197 (198)
252 PF05536 Neurochondrin: Neuroc 85.2 67 0.0015 35.6 29.0 325 154-490 52-460 (543)
253 PF09324 DUF1981: Domain of un 84.5 5 0.00011 32.7 7.2 66 28-93 13-79 (86)
254 KOG2973 Uncharacterized conser 84.5 7.9 0.00017 39.1 9.8 107 36-146 7-114 (353)
255 PF11864 DUF3384: Domain of un 84.1 68 0.0015 34.8 26.3 284 44-346 2-327 (464)
256 KOG1837 Uncharacterized conser 83.7 45 0.00098 40.7 17.0 117 114-234 1499-1620(1621)
257 COG5234 CIN1 Beta-tubulin fold 83.7 83 0.0018 35.5 19.4 153 26-183 240-415 (993)
258 KOG1848 Uncharacterized conser 83.6 18 0.00038 43.5 13.5 118 71-188 995-1136(1610)
259 smart00802 UME Domain in UVSB 83.4 19 0.00042 30.6 10.6 68 291-360 27-96 (107)
260 smart00185 ARM Armadillo/beta- 83.4 1.6 3.4E-05 29.4 3.3 28 33-60 13-40 (41)
261 PF09324 DUF1981: Domain of un 83.2 7 0.00015 31.8 7.6 69 279-347 17-86 (86)
262 PF12074 DUF3554: Domain of un 82.9 61 0.0013 33.4 19.8 225 130-366 3-254 (339)
263 KOG1851 Uncharacterized conser 82.6 32 0.00069 42.0 15.1 151 30-185 1524-1679(1710)
264 cd03572 ENTH_epsin_related ENT 82.3 4 8.8E-05 35.6 6.1 72 193-264 35-117 (122)
265 PF14225 MOR2-PAG1_C: Cell mor 81.3 61 0.0013 32.3 15.3 140 71-229 109-258 (262)
266 smart00567 EZ_HEAT E-Z type HE 81.0 1.7 3.7E-05 27.5 2.6 30 46-85 1-30 (30)
267 PF12074 DUF3554: Domain of un 81.0 71 0.0015 32.9 16.6 210 31-248 21-255 (339)
268 PF14664 RICTOR_N: Rapamycin-i 80.5 39 0.00084 35.6 13.9 165 14-183 86-268 (371)
269 KOG1837 Uncharacterized conser 80.5 1.3E+02 0.0029 37.0 19.2 71 277-347 1539-1609(1621)
270 PF12054 DUF3535: Domain of un 80.5 89 0.0019 33.7 19.4 108 128-238 101-223 (441)
271 smart00288 VHS Domain present 80.4 22 0.00048 31.4 10.4 76 113-188 36-115 (133)
272 PF08713 DNA_alkylation: DNA a 79.8 14 0.00031 35.1 9.7 133 195-349 50-184 (213)
273 KOG1048 Neural adherens juncti 79.6 1.2E+02 0.0026 34.6 22.0 110 34-144 235-350 (717)
274 PF11698 V-ATPase_H_C: V-ATPas 78.4 7.3 0.00016 33.8 6.4 68 32-100 43-114 (119)
275 cd03567 VHS_GGA VHS domain fam 78.2 16 0.00035 32.7 8.8 73 116-188 40-120 (139)
276 KOG2085 Serine/threonine prote 78.1 97 0.0021 32.7 18.6 101 279-379 341-445 (457)
277 cd00197 VHS_ENTH_ANTH VHS, ENT 77.7 19 0.00042 30.7 9.0 78 17-94 22-107 (115)
278 PF00790 VHS: VHS domain; Int 77.0 32 0.00069 30.6 10.5 85 17-101 27-118 (140)
279 cd07064 AlkD_like_1 A new stru 76.9 71 0.0015 30.6 17.1 177 153-358 10-189 (208)
280 PF08713 DNA_alkylation: DNA a 76.8 16 0.00035 34.6 9.2 139 74-234 52-193 (213)
281 cd03569 VHS_Hrs_Vps27p VHS dom 76.5 57 0.0012 29.2 12.8 77 113-189 40-119 (142)
282 KOG1848 Uncharacterized conser 76.4 1.9E+02 0.0042 35.3 19.6 229 38-267 848-1133(1610)
283 PF12397 U3snoRNP10: U3 small 76.2 40 0.00086 29.0 10.6 71 277-350 4-75 (121)
284 KOG2011 Sister chromatid cohes 75.9 54 0.0012 38.8 14.2 148 66-221 279-431 (1048)
285 PF12765 Cohesin_HEAT: HEAT re 75.9 2.3 5E-05 29.6 2.2 24 32-55 18-41 (42)
286 PF00790 VHS: VHS domain; Int 75.9 36 0.00077 30.3 10.5 77 112-188 40-122 (140)
287 PF11698 V-ATPase_H_C: V-ATPas 75.8 9.9 0.00021 33.0 6.5 68 73-142 43-114 (119)
288 KOG4199 Uncharacterized conser 75.8 77 0.0017 32.7 13.5 184 71-264 207-442 (461)
289 cd03569 VHS_Hrs_Vps27p VHS dom 75.3 33 0.00072 30.7 10.1 82 17-98 26-111 (142)
290 COG5221 DOP1 Dopey and related 74.7 1.8E+02 0.0039 34.6 17.3 132 213-351 122-259 (1618)
291 smart00185 ARM Armadillo/beta- 74.6 5.2 0.00011 26.7 3.7 29 320-348 12-40 (41)
292 KOG3036 Protein involved in ce 74.0 95 0.0021 30.6 13.5 68 282-349 127-197 (293)
293 PF14750 INTS2: Integrator com 73.7 2.1E+02 0.0045 34.4 22.7 94 342-435 179-288 (1049)
294 PF08389 Xpo1: Exportin 1-like 72.8 14 0.00029 32.6 7.1 125 129-260 3-147 (148)
295 PF03130 HEAT_PBS: PBS lyase H 72.6 2.1 4.5E-05 26.7 1.1 27 48-84 1-27 (27)
296 cd03567 VHS_GGA VHS domain fam 72.4 72 0.0016 28.5 12.9 88 259-348 20-115 (139)
297 KOG4500 Rho/Rac GTPase guanine 72.3 1.4E+02 0.0031 31.9 19.5 234 113-349 314-564 (604)
298 PF14225 MOR2-PAG1_C: Cell mor 72.1 1.1E+02 0.0024 30.5 20.8 177 111-303 61-252 (262)
299 COG5657 CSE1 CAS/CSE protein i 71.6 2.1E+02 0.0044 33.4 26.9 160 170-332 508-671 (947)
300 cd03561 VHS VHS domain family; 71.6 67 0.0015 28.3 11.1 86 261-348 21-111 (133)
301 cd03565 VHS_Tom1 VHS domain fa 70.1 82 0.0018 28.2 11.3 76 114-189 38-120 (141)
302 PF14631 FancD2: Fanconi anaem 69.2 3E+02 0.0066 34.4 22.1 149 150-304 430-580 (1426)
303 PF11919 DUF3437: Domain of un 68.5 16 0.00036 30.0 5.9 58 212-270 5-62 (90)
304 KOG2759 Vacuolar H+-ATPase V1 68.2 1.7E+02 0.0037 31.1 19.9 266 75-348 116-437 (442)
305 PF14663 RasGEF_N_2: Rapamycin 68.0 11 0.00024 32.5 5.0 40 320-359 8-47 (115)
306 COG5234 CIN1 Beta-tubulin fold 67.9 90 0.002 35.2 12.8 177 125-308 207-416 (993)
307 KOG4524 Uncharacterized conser 67.3 2.6E+02 0.0056 32.9 27.6 77 20-96 266-343 (1014)
308 PF08161 NUC173: NUC173 domain 67.2 71 0.0015 30.4 10.9 59 129-187 15-73 (198)
309 cd00197 VHS_ENTH_ANTH VHS, ENT 67.0 50 0.0011 28.1 9.0 72 276-347 34-113 (115)
310 PF11864 DUF3384: Domain of un 66.9 1.9E+02 0.0042 31.3 25.4 106 69-183 213-329 (464)
311 KOG2153 Protein involved in th 66.8 2.2E+02 0.0048 31.9 19.3 267 75-367 212-596 (704)
312 PF14911 MMS22L_C: S-phase gen 66.4 1.8E+02 0.0038 30.7 20.9 83 234-316 253-337 (373)
313 PF04078 Rcd1: Cell differenti 65.8 93 0.002 30.9 11.5 68 281-348 97-167 (262)
314 PF14911 MMS22L_C: S-phase gen 65.8 96 0.0021 32.6 12.3 143 149-311 141-290 (373)
315 PF12333 Ipi1_N: Rix1 complex 65.5 18 0.00039 30.4 5.8 42 146-187 2-43 (102)
316 KOG4500 Rho/Rac GTPase guanine 64.7 2E+02 0.0044 30.8 18.3 112 235-349 313-431 (604)
317 PF12333 Ipi1_N: Rix1 complex 64.3 17 0.00036 30.7 5.3 58 192-249 7-65 (102)
318 cd03572 ENTH_epsin_related ENT 63.1 42 0.00092 29.3 7.7 72 277-349 36-119 (122)
319 KOG2011 Sister chromatid cohes 61.4 3.5E+02 0.0076 32.4 25.7 138 286-425 294-441 (1048)
320 PF04510 DUF577: Family of unk 61.4 1.3E+02 0.0027 28.0 10.7 48 297-346 60-108 (174)
321 PF11919 DUF3437: Domain of un 60.7 16 0.00035 30.1 4.5 56 130-186 5-60 (90)
322 PF11707 Npa1: Ribosome 60S bi 60.6 2.1E+02 0.0045 29.5 19.5 92 294-385 129-237 (330)
323 PF14631 FancD2: Fanconi anaem 60.1 58 0.0013 40.4 10.8 116 228-348 426-541 (1426)
324 smart00145 PI3Ka Phosphoinosit 59.5 24 0.00052 33.2 6.0 77 71-160 42-119 (184)
325 PF12231 Rif1_N: Rap1-interact 59.4 2.3E+02 0.005 29.7 30.6 193 293-529 148-351 (372)
326 COG5537 IRR1 Cohesin [Cell div 58.7 3E+02 0.0065 30.7 15.2 132 116-254 277-410 (740)
327 PF04078 Rcd1: Cell differenti 58.6 97 0.0021 30.8 10.2 55 210-264 110-166 (262)
328 COG1698 Uncharacterized protei 58.0 98 0.0021 25.3 8.2 74 69-144 13-91 (93)
329 PF12783 Sec7_N: Guanine nucle 56.5 1.1E+02 0.0024 27.9 9.9 76 279-354 73-151 (168)
330 KOG2005 26S proteasome regulat 56.3 3.4E+02 0.0075 30.7 14.7 95 113-217 451-551 (878)
331 KOG1789 Endocytosis protein RM 56.3 4.3E+02 0.0094 31.8 24.1 117 50-184 1743-1883(2235)
332 cd00872 PI3Ka_I Phosphoinositi 56.2 36 0.00079 31.6 6.5 75 72-159 38-113 (171)
333 PF12612 TFCD_C: Tubulin foldi 56.1 43 0.00094 31.6 7.3 116 28-186 3-118 (193)
334 KOG3036 Protein involved in ce 55.4 2.2E+02 0.0048 28.2 13.3 67 198-264 126-195 (293)
335 PF11935 DUF3453: Domain of un 55.3 2.1E+02 0.0046 27.9 18.0 175 246-429 2-222 (239)
336 PF11916 Vac14_Fig4_bd: Vacuol 54.8 41 0.00089 31.5 6.6 70 441-528 8-85 (182)
337 PF07571 DUF1546: Protein of u 54.5 52 0.0011 27.1 6.6 59 290-348 17-77 (92)
338 cd00864 PI3Ka Phosphoinositide 54.2 49 0.0011 30.0 7.0 40 116-160 75-114 (152)
339 KOG0929 Guanine nucleotide exc 54.0 3.5E+02 0.0076 33.7 15.5 220 35-265 1040-1297(1514)
340 smart00288 VHS Domain present 52.2 1.7E+02 0.0036 25.8 11.7 88 182-270 24-115 (133)
341 PF04388 Hamartin: Hamartin pr 52.1 61 0.0013 36.9 8.8 69 278-348 69-139 (668)
342 KOG2199 Signal transducing ada 51.4 2.6E+02 0.0056 29.5 12.1 76 116-191 47-125 (462)
343 cd06561 AlkD_like A new struct 51.4 2E+02 0.0044 26.6 15.4 110 110-235 71-180 (197)
344 PF14228 MOR2-PAG1_mid: Cell m 50.9 5.4E+02 0.012 31.3 20.9 83 172-265 487-571 (1120)
345 PF12726 SEN1_N: SEN1 N termin 50.7 4.5E+02 0.0097 30.3 29.4 94 295-389 497-612 (727)
346 cd07064 AlkD_like_1 A new stru 49.2 2.4E+02 0.0053 26.9 16.9 169 39-235 19-189 (208)
347 PF11701 UNC45-central: Myosin 48.8 1.1E+02 0.0023 27.9 8.3 130 43-178 16-153 (157)
348 PF07539 DRIM: Down-regulated 47.9 2.1E+02 0.0045 25.7 10.7 88 67-164 11-101 (141)
349 PF06371 Drf_GBD: Diaphanous G 47.4 20 0.00043 33.3 3.4 88 213-307 93-186 (187)
350 PF11701 UNC45-central: Myosin 47.1 50 0.0011 30.0 5.9 96 249-349 17-117 (157)
351 cd00870 PI3Ka_III Phosphoinosi 46.8 64 0.0014 29.8 6.6 76 72-160 45-121 (166)
352 PF14961 BROMI: Broad-minded p 46.5 6.3E+02 0.014 30.8 18.8 69 278-349 160-231 (1296)
353 COG4912 Predicted DNA alkylati 46.3 2.8E+02 0.0062 26.8 11.2 23 36-58 60-82 (222)
354 KOG1087 Cytosolic sorting prot 45.9 80 0.0017 34.2 8.0 86 16-101 22-112 (470)
355 KOG3687 Tuberin - Rap/ran-GTPa 45.0 6.1E+02 0.013 30.3 24.5 241 166-414 484-804 (1697)
356 PF04388 Hamartin: Hamartin pr 43.9 4.3E+02 0.0093 30.2 13.9 152 158-330 7-162 (668)
357 PF01417 ENTH: ENTH domain; I 43.3 92 0.002 27.0 6.8 73 192-264 35-119 (125)
358 PF12397 U3snoRNP10: U3 small 42.5 2.2E+02 0.0047 24.3 10.9 81 316-398 2-92 (121)
359 KOG1466 Translation initiation 41.4 1.5E+02 0.0032 29.5 8.2 99 279-385 12-115 (313)
360 PF03542 Tuberin: Tuberin; In 40.7 2.8E+02 0.0061 29.0 10.9 171 109-291 136-331 (356)
361 PF00613 PI3Ka: Phosphoinositi 38.3 20 0.00043 33.7 1.8 74 72-158 44-118 (184)
362 KOG2256 Predicted protein invo 37.4 6.5E+02 0.014 28.4 15.0 170 334-514 256-450 (661)
363 KOG2213 Apoptosis inhibitor 5/ 37.4 5.3E+02 0.011 27.3 22.9 45 73-124 61-106 (460)
364 PRK04330 hypothetical protein; 36.3 2.4E+02 0.0052 23.1 8.4 71 71-143 11-86 (88)
365 PF14677 FANCI_S3: FANCI solen 36.2 3.3E+02 0.0071 26.4 9.9 65 39-103 85-152 (219)
366 PF01417 ENTH: ENTH domain; I 35.8 1.4E+02 0.003 25.9 6.7 73 275-348 35-120 (125)
367 PF07834 RanGAP1_C: RanGAP1 C- 35.4 2.3E+02 0.005 26.6 8.2 83 80-168 75-164 (183)
368 PF12612 TFCD_C: Tubulin foldi 35.2 3.8E+02 0.0083 25.1 10.3 128 234-369 4-140 (193)
369 smart00145 PI3Ka Phosphoinosit 34.7 95 0.0021 29.2 5.8 46 192-242 74-119 (184)
370 PF04499 SAPS: SIT4 phosphatas 34.2 4.8E+02 0.01 28.5 11.8 73 177-268 21-94 (475)
371 cd00871 PI4Ka Phosphoinositide 34.2 45 0.00098 31.1 3.5 30 126-158 83-112 (175)
372 cd00864 PI3Ka Phosphoinositide 34.1 1.2E+02 0.0026 27.5 6.2 46 192-242 69-114 (152)
373 cd00869 PI3Ka_II Phosphoinosit 34.0 46 0.00099 30.9 3.5 31 126-159 83-113 (169)
374 cd03565 VHS_Tom1 VHS domain fa 33.6 3.5E+02 0.0075 24.1 11.5 87 260-348 21-114 (141)
375 PF12783 Sec7_N: Guanine nucle 32.4 3.8E+02 0.0083 24.2 11.8 57 292-348 35-101 (168)
376 PF05478 Prominin: Prominin; 31.5 3.1E+02 0.0066 32.1 10.5 77 374-457 217-294 (806)
377 PF04063 DUF383: Domain of unk 31.1 4.6E+02 0.01 24.8 11.0 120 40-183 3-131 (192)
378 PF14961 BROMI: Broad-minded p 30.6 1E+02 0.0023 36.9 6.3 67 13-99 160-229 (1296)
379 PF14868 DUF4487: Domain of un 30.3 4E+02 0.0087 29.7 10.5 76 72-147 478-556 (559)
380 PF04499 SAPS: SIT4 phosphatas 29.5 7.1E+02 0.015 27.1 12.2 63 112-187 32-95 (475)
381 PF14222 MOR2-PAG1_N: Cell mor 29.3 8.3E+02 0.018 27.2 23.3 320 21-347 122-547 (552)
382 KOG2759 Vacuolar H+-ATPase V1 29.2 5.8E+02 0.013 27.2 10.8 69 196-265 366-437 (442)
383 PF09759 Atx10homo_assoc: Spin 28.0 3.1E+02 0.0067 23.1 7.2 78 296-374 3-84 (102)
384 PF02847 MA3: MA3 domain; Int 27.8 3.5E+02 0.0077 22.4 8.1 73 27-99 31-106 (113)
385 PF04510 DUF577: Family of unk 27.5 5.1E+02 0.011 24.1 11.2 142 280-435 4-158 (174)
386 PF07539 DRIM: Down-regulated 27.2 1.8E+02 0.004 26.0 6.1 50 33-91 18-67 (141)
387 KOG2085 Serine/threonine prote 26.3 8.2E+02 0.018 26.1 14.3 215 28-266 172-414 (457)
388 COG5537 IRR1 Cohesin [Cell div 26.2 9.7E+02 0.021 27.0 16.9 115 149-267 268-387 (740)
389 cd00872 PI3Ka_I Phosphoinositi 25.9 2.1E+02 0.0046 26.5 6.4 47 333-381 84-130 (171)
390 KOG3723 PH domain protein Melt 25.9 1.9E+02 0.0042 31.8 6.8 78 300-387 183-261 (851)
391 PF03685 UPF0147: Uncharacteri 25.4 3.4E+02 0.0073 22.1 6.6 67 71-141 8-81 (85)
392 PF11707 Npa1: Ribosome 60S bi 24.8 7.6E+02 0.017 25.3 18.8 201 116-322 58-313 (330)
393 PF11841 DUF3361: Domain of un 24.6 4.3E+02 0.0094 24.2 8.0 95 215-314 36-137 (160)
394 PF14663 RasGEF_N_2: Rapamycin 24.0 1.4E+02 0.0031 25.5 4.7 33 29-61 5-37 (115)
395 PF14745 WASH-7_N: WASH comple 23.6 7E+02 0.015 27.8 11.2 67 419-514 167-238 (567)
396 KOG0905 Phosphoinositide 3-kin 23.5 4.7E+02 0.01 31.8 9.6 36 207-245 901-936 (1639)
397 cd03562 CID CID (CTD-Interacti 23.2 2.6E+02 0.0056 23.5 6.1 68 278-345 36-104 (114)
398 KOG1048 Neural adherens juncti 23.2 4.8E+02 0.01 29.9 9.5 101 75-182 235-347 (717)
399 KOG2199 Signal transducing ada 23.0 7.1E+02 0.015 26.4 9.9 98 172-270 22-122 (462)
400 COG5231 VMA13 Vacuolar H+-ATPa 23.0 8.6E+02 0.019 25.2 10.9 94 81-184 330-428 (432)
401 PRK12323 DNA polymerase III su 22.3 2.9E+02 0.0064 31.5 7.7 30 379-408 316-345 (700)
402 PF00613 PI3Ka: Phosphoinositi 22.2 4E+02 0.0087 24.9 7.7 92 277-381 43-136 (184)
403 COG4912 Predicted DNA alkylati 21.8 7.4E+02 0.016 24.0 9.3 83 278-365 117-200 (222)
404 PF13925 Katanin_con80: con80 21.6 3E+02 0.0064 25.2 6.5 43 274-316 61-106 (164)
405 PF12726 SEN1_N: SEN1 N termin 21.4 1.3E+03 0.028 26.6 35.6 186 72-259 119-339 (727)
406 cd03562 CID CID (CTD-Interacti 21.4 4.9E+02 0.011 21.8 8.4 69 72-140 36-105 (114)
407 COG5231 VMA13 Vacuolar H+-ATPa 21.4 9.2E+02 0.02 25.0 17.8 217 114-348 195-427 (432)
408 KOG4646 Uncharacterized conser 21.4 2.5E+02 0.0054 25.3 5.5 85 279-366 58-150 (173)
409 PRK08691 DNA polymerase III su 20.8 4.2E+02 0.009 30.4 8.6 70 340-409 264-341 (709)
410 PF14228 MOR2-PAG1_mid: Cell m 20.5 9.9E+02 0.021 29.2 12.0 55 133-187 935-989 (1120)
411 cd00870 PI3Ka_III Phosphoinosi 20.2 3.2E+02 0.007 25.1 6.4 36 333-370 91-126 (166)
412 COG5209 RCD1 Uncharacterized p 20.1 3.4E+02 0.0073 26.5 6.5 59 292-350 159-219 (315)
No 1
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.1e-126 Score=964.30 Aligned_cols=507 Identities=54% Similarity=0.892 Sum_probs=493.8
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHhhcc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE 106 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi~~e 106 (541)
..|+..++|||+.||+|+|.+|||||||++|||+|++++++..||+++|+++||+.+|+|++||+||+.+||++|||+++
T Consensus 79 ~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccc
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc-hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 107 SD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 107 ~~-~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
+. +|+++.|||.|.+++++.||.+|+++++|++.+.++|+.+|..|+|++++|||++|+|++++||..+..++++|+.+
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 76 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCCh-hHHHHHHHHHHH
Q 009182 186 IKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE-KIRVVARETNEE 263 (541)
Q Consensus 186 i~~~~~~-~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~-~iR~~A~~~~~~ 263 (541)
|..+|.. +++.++++++.+.+++++++|..|+.||.+|++++|.++++|+++++..+++|++|+++ .+++.|..+|+.
T Consensus 239 I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 239 IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 9988877 89999999999999999999999999999999999999999999999999999999887 699999999999
Q ss_pred HHHhhcCC--CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHH
Q 009182 264 LRAIKADP--ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVL 341 (541)
Q Consensus 264 L~~~i~~~--~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~ 341 (541)
+++.+.+. ++.+|++.+++++.+++.++.+++|++|++|+..++.+.|+++..|.++++++|+++|+|++++|+..++
T Consensus 319 l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 319 LLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred HHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence 99887654 3348999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHh
Q 009182 342 EVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLI 419 (541)
Q Consensus 342 ~~L~~i~~--~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~i 419 (541)
.+++.|++ +..++.+|+.+||++|+.+++++++||++||||||.+++||+||+.+|+||+.++|+.||++|||+||+|
T Consensus 399 ~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAstMV~~Ln~i 478 (675)
T KOG0212|consen 399 SLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFASTMVQALNTI 478 (675)
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHHHHHHHHHhh
Confidence 99999994 4457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHhHHHHHHHHhhccCCcchhHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 009182 420 LLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRL 499 (541)
Q Consensus 420 l~t~~el~~~R~~L~~~~~~~~~~~lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~~~l~~id~lvql 499 (541)
|+|||||+++|++||+ +.+++++++|+|||++|||||||++|||||||||+|||++++.|++.|+|+++|+|+||||||
T Consensus 479 LlTStELf~LR~~Lk~-lsn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~liq~fa~~eitvd~L~elDKLVqL 557 (675)
T KOG0212|consen 479 LLTSTELFQLRNKLKD-LSNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDLIQLFADVEITVDFLVELDKLVQL 557 (675)
T ss_pred hcccHHHHHHHHHHHh-ccChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHhhhhhcCCCCChhHHHHHHHHHHHhhH
Q 009182 500 LETPIFAYLRLQVLKLRTEDYLFALLFGLTGFFNL 534 (541)
Q Consensus 500 ~esp~f~~lRl~ll~~~~~~~l~~~l~gllmllp~ 534 (541)
||||+|||+|+|||||.+||||.|||||||||||+
T Consensus 558 iEsPIFtylRLqLLe~~~~pyL~kaLyGlLMLLPQ 592 (675)
T KOG0212|consen 558 IESPIFTYLRLQLLEPKNNPYLHKALYGLLMLLPQ 592 (675)
T ss_pred HhcchHHHHHHHHhccccCchHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999998
No 2
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 211 to 243 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=3.3e-67 Score=475.51 Aligned_cols=168 Identities=55% Similarity=0.927 Sum_probs=162.5
Q ss_pred cchhhhhhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHHHHHHHhhccCCcchhHHHH
Q 009182 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFV 447 (541)
Q Consensus 368 ~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~~R~~L~~~~~~~~~~~lf~ 447 (541)
|++++++||++||||||..+|+|+||+++|++|+.++|++|++.|||+||+||+||+|+++||++||+.-.+++++++|.
T Consensus 1 D~~LL~~Rg~~IIRqLC~~L~~E~iy~~la~iL~~~~dl~Fas~mVq~LN~iLLTs~EL~~LR~~Lr~~~~~~~~~~lF~ 80 (182)
T PF11916_consen 1 DRKLLERRGSFIIRQLCVLLNAERIYRTLASILESEEDLEFASMMVQTLNNILLTSPELFDLRKKLRNLDTDEEGQSLFS 80 (182)
T ss_pred CHhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcchHHHHHHHHHHhccccchHHhHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999998333456999999
Q ss_pred HHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHHHhhhhhhhHhhhhhcCCCCChhHHHHHHH
Q 009182 448 SLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQVLKLRTEDYLFALLFG 527 (541)
Q Consensus 448 ~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~~~l~~id~lvql~esp~f~~lRl~ll~~~~~~~l~~~l~g 527 (541)
+||+|||||||||+|||||+|+|+|||++++.|+++|+|+++|+|+|+||||+|||+|+++|+|||||++||||+|||||
T Consensus 81 ~Ly~sWchNpva~lSLcLl~q~Y~~A~~li~~~~~~e~~~~~L~qiD~LVqLlESPiF~~lRlqLLep~~~p~L~k~Lyg 160 (182)
T PF11916_consen 81 TLYRSWCHNPVATLSLCLLAQAYEHAYNLIQSFAELEVTVDFLVQIDKLVQLLESPIFTYLRLQLLEPEKYPYLYKCLYG 160 (182)
T ss_pred HHHHHHhcCHHHHHHHHHHHhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhhhhHHHHHHHhCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHH
Q 009182 528 LTGFFNLL 535 (541)
Q Consensus 528 llmllp~~ 535 (541)
|||+||+-
T Consensus 161 LlMlLPQs 168 (182)
T PF11916_consen 161 LLMLLPQS 168 (182)
T ss_pred HHHHCCCh
Confidence 99999964
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-40 Score=339.40 Aligned_cols=490 Identities=17% Similarity=0.208 Sum_probs=370.7
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
.+.+.++...++++++|+++-||.+.+..+..|+ ..+...+|++++|.|+.+++.++.+..+|| .+|.++|+|...
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~---s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~ 161 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIA---STGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ 161 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeee---cccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH
Confidence 3557778899999999999999999998777766 334456789999999999999999999999 999999998875
Q ss_pred c----cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 009182 106 E----SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (541)
Q Consensus 106 e----~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ 181 (541)
. -.+++++.++|.+.+++++++|.+|..++.+++++.-+....+..+++.|+.++|.+.+|++++||+..|.++.-
T Consensus 162 ~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~ 241 (885)
T KOG2023|consen 162 FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVF 241 (885)
T ss_pred HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3 235889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHh--hcCcCcccchhhHHHHHhhhcCCCChhH-----
Q 009182 182 FLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVK--LGGDQLVPYYADILGAILPCISDKEEKI----- 253 (541)
Q Consensus 182 ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~-wL~~l~~--~~~~~l~p~l~~llp~ll~~l~d~~~~i----- 253 (541)
+++.-..+..+++++|++++++.++|.|++|+..|++ |+. +++ ++++.+.||+++++|+++..|.|++.++
T Consensus 242 Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla-~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~ 320 (885)
T KOG2023|consen 242 LLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA-LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN 320 (885)
T ss_pred HHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC
Confidence 9876665566899999999999999999999999885 665 544 5678899999999999999999976443
Q ss_pred --------------HHHHHHHHH----HHHHh---hc---CCC---CCCC--------------------hHhHHHHHHH
Q 009182 254 --------------RVVARETNE----ELRAI---KA---DPA---DGFD--------------------VGPILSIATR 286 (541)
Q Consensus 254 --------------R~~A~~~~~----~L~~~---i~---~~~---~~~~--------------------l~~il~~L~~ 286 (541)
|....+... ...+- .. +++ ..|+ ++.++|.|.+
T Consensus 321 ~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 321 NEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKE 400 (885)
T ss_pred ccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 221111100 00000 00 000 0122 3567788899
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh------cchhhHHHHHHH
Q 009182 287 QLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA------KDLQHFRQLVVF 360 (541)
Q Consensus 287 ~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~------~~~~~f~~~m~~ 360 (541)
.|.++.|.+|++++.++|+++++|++++.||++.++|+++.+|+|+.+.||+++||+|++++ ++++||++++.+
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ 480 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEG 480 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 357999999999
Q ss_pred HHHhccccchhhhhhHHHHHHHhhccCChh------hHHHHHHHHhccc--CChHHHHHHHHHhHHhh---cCcHhH---
Q 009182 361 LVHNFRVDNSLLEKRGALIIRRLCVLLDAE------RVYRELSTILEGE--ADLDFACTMVQALNLIL---LTSSEL--- 426 (541)
Q Consensus 361 LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e------~i~~~l~~il~~~--~d~~f~~~~v~~L~~il---~t~~el--- 426 (541)
+++++.+.++.+++.|-..+..+-..-+.| .|..++...++++ +++-.+..-|.+|+-=- +..|+.
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiqi 560 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQI 560 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999888888888888888887777763 4555555555554 56666666666664322 223331
Q ss_pred -----HHHHHHHhhccCCcchhHHHHHHHHhhccChHHHHHHHHHH---hhhHHHHHHHHHhhccc------c-------
Q 009182 427 -----SELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLA---QTYHHASAVIQSLVEED------L------- 485 (541)
Q Consensus 427 -----~~~R~~L~~~~~~~~~~~lf~~l~~~w~~n~~~~~slcll~---~~y~~a~~ll~~~~~~~------~------- 485 (541)
-+==..|++ ++++..+++.|+-.-- +++.-.++- .-|+-+.+|++.-.+.. -
T Consensus 561 LmPPLi~KW~~lsd--~DKdLfPLLEClSsia-----~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdk 633 (885)
T KOG2023|consen 561 LMPPLIEKWELLSD--SDKDLFPLLECLSSIA-----SALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDK 633 (885)
T ss_pred hccHHHHHHHhcCc--ccchHHHHHHHHHHHH-----HHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCc
Confidence 111233444 5677778777663221 222222211 27888999888432211 1
Q ss_pred -----chHHHHHHHHHHH----Hhhhhhh-hHhhhhhcC--CCCChhHHHHHHHHHH
Q 009182 486 -----NVKFLVQLDKLIR----LLETPIF-AYLRLQVLK--LRTEDYLFALLFGLTG 530 (541)
Q Consensus 486 -----~~~~l~~id~lvq----l~esp~f-~~lRl~ll~--~~~~~~l~~~l~gllm 530 (541)
+++. ++-|+| =+|+=++ .++|--+++ .|.-|..-++-|+||-
T Consensus 634 dfiI~sLDL---~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLG 687 (885)
T KOG2023|consen 634 DFIIVSLDL---LSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLG 687 (885)
T ss_pred ceEEEeHHH---HhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHH
Confidence 1221 223333 3344444 456655555 4557778888777764
No 4
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-30 Score=267.96 Aligned_cols=477 Identities=17% Similarity=0.238 Sum_probs=370.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHh-chhhhhHHHHHHHHHHH-hhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVV-RGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~-~~~~~~~~~~i~~~L~k-l~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
..+.++++|+.++.|++|+..+.++++.+ ...-...+..+++.|++ ....++.+-|+|+ .++.+..-.+..+... .
T Consensus 3 ~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y 81 (675)
T KOG0212|consen 3 ASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-Y 81 (675)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-H
Confidence 35778999999999999999999999986 33445667888887775 6678899999998 7777766555555433 7
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC-
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP- 190 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~- 190 (541)
++.++|++..++.|++.+||+++|+.+.+++++...+...|++++++.++++.+|++..||.+| +.++++++.+....
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA 160 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999998 89999999887543
Q ss_pred -CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc
Q 009182 191 -SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (541)
Q Consensus 191 -~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~ 269 (541)
..+++.+||.+-+++...++.+|...+.|+..+...++-+|..|+|.++++++++++|+.++||..+..+.+++++-+.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHH-HHHH---HHHHHH
Q 009182 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE-VVLL---VLEVHA 345 (541)
Q Consensus 270 ~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~-V~~~---~~~~L~ 345 (541)
+.+...+++.+++++..++.+++...+..|+.|+..+....|.++.++.++++..++++++|..+. ++.. +-..+.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999999999999999999999998763 4432 222333
Q ss_pred HHh-c----chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh------hhHHHHHHHHhcccCChHHHHHHHH
Q 009182 346 CIA-K----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGEADLDFACTMVQ 414 (541)
Q Consensus 346 ~i~-~----~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~------e~i~~~l~~il~~~~d~~f~~~~v~ 414 (541)
.+. + .+-.|.++|..+.+.+.+|+.--+-.+--||++|....+. ..||.++-.-|++.+|. .+..-..
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~-vvl~~L~ 399 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDE-VVLLALS 399 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhH-HHHHHHH
Confidence 333 1 2345679999999999988763333333499999999887 48888988888887763 2233333
Q ss_pred HhHHhhcCcHhHHHHHHHHhhccCCcchhHHHHH---HHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHH
Q 009182 415 ALNLILLTSSELSELRDLLKKSLVNPAGKDLFVS---LYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLV 491 (541)
Q Consensus 415 ~L~~il~t~~el~~~R~~L~~~~~~~~~~~lf~~---l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~~~l~ 491 (541)
.+..|-..+.. ..+|+-+.+ -.++|.. +.+.= -+-=.=-||++-. =|+.|+ .|+++=-+.+.+-
T Consensus 400 lla~i~~s~~~-~~~~~fl~s------LL~~f~e~~~~l~~R--g~lIIRqlC~lL~-aE~IYr---~~a~ILe~e~nl~ 466 (675)
T KOG0212|consen 400 LLASICSSSNS-PNLRKFLLS------LLEMFKEDTKLLEVR--GNLIIRQLCLLLN-AERIYR---SIADILEREENLK 466 (675)
T ss_pred HHHHHhcCccc-ccHHHHHHH------HHHHHhhhhHHHHhh--hhHHHHHHHHHhC-HHHHHH---HHHHHHhccccch
Confidence 44444333222 244555544 2222222 00000 0000012344432 233333 3333222233333
Q ss_pred HHHHHHH-----HhhhhhhhHhhhhhc--CCCCChhHHHHHHH
Q 009182 492 QLDKLIR-----LLETPIFAYLRLQVL--KLRTEDYLFALLFG 527 (541)
Q Consensus 492 ~id~lvq-----l~esp~f~~lRl~ll--~~~~~~~l~~~l~g 527 (541)
...-.|| |+.||..-.||-+|= ..++-..|+.|||-
T Consensus 467 FAstMV~~Ln~iLlTStELf~LR~~Lk~lsn~es~~lF~cLy~ 509 (675)
T KOG0212|consen 467 FASTMVQALNTILLTSTELFQLRNKLKDLSNEESQNLFCCLYR 509 (675)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHhccChhhhHHHHHHHH
Confidence 4555666 789999999998886 46678899999995
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.1e-19 Score=199.29 Aligned_cols=314 Identities=16% Similarity=0.207 Sum_probs=242.0
Q ss_pred hhhcchhHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 28 TILQQIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 28 ~~l~~ii~~vl~~l-~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
.-...|...++.++ ..+.+.||..-|+.+.+|++..-++ .||++++.|....++++++.|+.| ..|..+.. +..
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~-~~~ 150 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPE-TFG 150 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh-hhc
Confidence 34556777777776 5779999999999999988765444 799999999999999999999999 66666655 444
Q ss_pred ccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC--chhhhchHHHHHHHH----HHcCCCCHHHHHHHHHHH
Q 009182 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLF----NMLSDSSHEIRQQADSAL 179 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~--~~l~~~lp~~L~~L~----~lL~D~~~eVR~~a~~~L 179 (541)
+.....+..+.+.+.+++.|++..||-.++.+++.+....+ .+....+-.++|+++ ....+.+.+.-..+-+++
T Consensus 151 ~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l 230 (1075)
T KOG2171|consen 151 NTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEAL 230 (1075)
T ss_pred cccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHH
Confidence 43444678999999999999887799999999998877654 444455555555555 444555666667777777
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhcC---cCcccchhhHHHHHhhhcCCCChh--
Q 009182 180 WEFLQEIKNSPSVDYGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGG---DQLVPYYADILGAILPCISDKEEK-- 252 (541)
Q Consensus 180 ~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~--~~~vr~~al~wL~~l~~~~~---~~l~p~l~~llp~ll~~l~d~~~~-- 252 (541)
.+++...++-..+++..++...++-..++ ++.+|..|++.|..+++.++ ....+|.++++|.++.+|.+-..+
T Consensus 231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e 310 (1075)
T KOG2171|consen 231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE 310 (1075)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence 77776655444456788888888876655 68899999887776666543 334568999999999999873211
Q ss_pred --------------HHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh
Q 009182 253 --------------IRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (541)
Q Consensus 253 --------------iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l 318 (541)
-...|.++.+.+.--. +...-++.+++.+...+++++|..|.|++.+++.++++|++.|.+.+
T Consensus 311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L---~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l 387 (1075)
T KOG2171|consen 311 WSNEDDLDEDDEETPYRAAEQALDRLALHL---GGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL 387 (1075)
T ss_pred hccccccccccccCcHHHHHHHHHHHHhcC---ChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1223444444442111 22234678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 319 ~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
++++|.+++.|+||+|.||-.+|.++++++
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999
No 6
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.81 E-value=1.8e-19 Score=150.73 Aligned_cols=77 Identities=70% Similarity=1.152 Sum_probs=75.2
Q ss_pred hhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhH
Q 009182 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKD 102 (541)
Q Consensus 26 ~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kd 102 (541)
+.+|++.|+|||+.||+|+|+||||+|||++||++|+++++++++|+++|++|+++++|+|++||+||+.||+++||
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999985
No 7
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.1e-16 Score=168.86 Aligned_cols=391 Identities=15% Similarity=0.153 Sum_probs=299.2
Q ss_pred HHHHHHHHHHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcC
Q 009182 5 YSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (541)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D 84 (541)
|.|..+..+--....+.-.-..++-...++...+..++-|++.||.+...++........+... ..+.+-+.++++-
T Consensus 69 ~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~ 145 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTS 145 (569)
T ss_pred hHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhcc
Confidence 4444444433334444444444555666888899999999999999999998877655443222 2445555666666
Q ss_pred CCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHH-HHHHHHHHHHHhhcCCCchhhhchHHHHHHHHH
Q 009182 85 SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPY-VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN 162 (541)
Q Consensus 85 ~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~-vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~ 162 (541)
+...-|.+| ..+..+.++...+. ..-..|+..+.+.+.|.++. .|+.+.-.........|...-+|+..+++.++.
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~--~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~ 223 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIES--LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT 223 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhh--hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH
Confidence 666667777 78888877555432 33456799999999996554 455555555555666667788999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHH
Q 009182 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (541)
Q Consensus 163 lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~l 242 (541)
..+|..+.||.+|..+...+...+. ...+..++|.++....+..|..+..+++.++.++...+..+--++|.++|.+
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~l 300 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLS---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVL 300 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcC---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHH
Confidence 9999999999999999888877653 2347888888888888779999999999999999999999988999999999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhhcCC---------------C--------------------CCCChHhHHHHHHHh
Q 009182 243 LPCISDKEEKIRVVARETNEELRAIKADP---------------A--------------------DGFDVGPILSIATRQ 287 (541)
Q Consensus 243 l~~l~d~~~~iR~~A~~~~~~L~~~i~~~---------------~--------------------~~~~l~~il~~L~~~ 287 (541)
...|.|+.+++|+++.++...+...+.+. + +...+.-++|.|.+.
T Consensus 301 sevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~ 380 (569)
T KOG1242|consen 301 SEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRG 380 (569)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHH
Confidence 99999999999999999988876655431 0 012456788999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhC--hHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chhhHHHHHHHHHH
Q 009182 288 LSSEWEATRIEALHWISTLLNRH--RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVH 363 (541)
Q Consensus 288 L~~~~~~~R~aal~wL~~L~~~~--~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~~f~~~m~~LL~ 363 (541)
+...+..++..+...++.++... |..+.||++.++|.+=+.+.|+.|+||..+.++|+.+-+ +..+|+...+.+.+
T Consensus 381 l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e 460 (569)
T KOG1242|consen 381 LAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSE 460 (569)
T ss_pred HhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHH
Confidence 97777776666666666666665 899999999999999999999999999999999977773 56788889999988
Q ss_pred hccccchhhhhhH-HHHHHHhhccCChhhHHHHHHHHhccc
Q 009182 364 NFRVDNSLLEKRG-ALIIRRLCVLLDAERVYRELSTILEGE 403 (541)
Q Consensus 364 ~~~~~~~ll~~r~-~~iir~Lc~~l~~e~i~~~l~~il~~~ 403 (541)
....+......-| ..-+...|..++-++....+++++...
T Consensus 461 ~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~ 501 (569)
T KOG1242|consen 461 TLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANA 501 (569)
T ss_pred hhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHH
Confidence 8876654444333 336777888888899999999988763
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.1e-16 Score=175.70 Aligned_cols=373 Identities=15% Similarity=0.141 Sum_probs=265.9
Q ss_pred cchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc--hhhhhHHHHHHHHHH----HhhcCCCHHHHHHH-HHH
Q 009182 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDFIIFFNQIFDALC----KLSADSDANVQSAA-HLL 96 (541)
Q Consensus 24 ~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~--~~~~~~~~~i~~~L~----kl~~D~d~~VR~~A-~~L 96 (541)
....+|+..+.+...+|++|++..||.+|..++..++.... +...+.|..++|.+. ..+++.|.+.-..+ +.+
T Consensus 151 ~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l 230 (1075)
T KOG2171|consen 151 NTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEAL 230 (1075)
T ss_pred cccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHH
Confidence 34457999999999999999999999999999999988773 444566666666554 46666666555555 555
Q ss_pred HHHHhHhhcccchhcHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCc---hhhhchHHHHHHHHHHcCCCCH--
Q 009182 97 DRLVKDIVTESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDI---DMLGFLPDFLDGLFNMLSDSSH-- 169 (541)
Q Consensus 97 ~~l~kdi~~e~~~~~l~~~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~~~~---~l~~~lp~~L~~L~~lL~D~~~-- 169 (541)
..++..-.. --...+..++..-.+..++ -++.+|..+++.|..+.+..+. ....+.+.+++.+..+++|...
T Consensus 231 ~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 231 IELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 444331110 0012234444444444443 5789999999999988877332 2345888888888888875321
Q ss_pred --------------HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch
Q 009182 170 --------------EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (541)
Q Consensus 170 --------------eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l 235 (541)
+--..|.++++.+...++. ..=.+.+++.+-..+++++|.-|.+++-.|+..++-+++.+.+.+
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l 387 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL 387 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1356788999999877652 223688888888899999999999999999999988889999999
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhChHH-
Q 009182 236 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTE- 313 (541)
Q Consensus 236 ~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~-~~~~R~aal~wL~~L~~~~~~~- 313 (541)
|+|+|.+++.+.|++|.||.+|.++.|++..-+...-....-+.+.|.|...+.+. +..+...|.-++..+.+.|+++
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999988533321100111245666888888654 4567777888888888888765
Q ss_pred HhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhccccc--hhhhhhHHH--HHHHh
Q 009182 314 VLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIA-----KDLQHFRQLVVFLVHNFRVDN--SLLEKRGAL--IIRRL 383 (541)
Q Consensus 314 i~~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~-----~~~~~f~~~m~~LL~~~~~~~--~ll~~r~~~--iir~L 383 (541)
+.||++.++.-.+..|.++ .+.|+..+..+++.++ ...+||+.+|+.|.+.+.+.+ .+-+-||.. =+--+
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 5799999999666665554 6889999999999998 356899999999999886543 333445543 22223
Q ss_pred hccCChhhHHHHHHHH
Q 009182 384 CVLLDAERVYRELSTI 399 (541)
Q Consensus 384 c~~l~~e~i~~~l~~i 399 (541)
+.-+|-|+.++.-.++
T Consensus 548 ~~AVGke~F~~~a~el 563 (1075)
T KOG2171|consen 548 ARAVGKEKFLPLAEEL 563 (1075)
T ss_pred HHHhhhhhhhHhHHHH
Confidence 3334445555444444
No 9
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=3.6e-16 Score=176.34 Aligned_cols=315 Identities=18% Similarity=0.235 Sum_probs=233.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhc
Q 009182 4 WYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA 83 (541)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~ 83 (541)
--||||.-|++|++ .+.++|+..++|.+.++=.||+..||.+....=..++..-+..+-.|+++|++.|...++
T Consensus 976 GaAfGf~~i~~~a~------~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAG------EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred chhhchHHHHHHHH------HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 35899999999997 777999999999999999999999999765333333322233455677777777776667
Q ss_pred CCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHH
Q 009182 84 DSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN 162 (541)
Q Consensus 84 D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~ 162 (541)
+.+-.||+++ -+|..++. ..+-.++...+|+++..+|+
T Consensus 1050 ~kewRVReasclAL~dLl~-----------------------------------------g~~~~~~~e~lpelw~~~fR 1088 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQ-----------------------------------------GRPFDQVKEKLPELWEAAFR 1088 (1702)
T ss_pred chhHHHHHHHHHHHHHHHc-----------------------------------------CCChHHHHHHHHHHHHHHHH
Confidence 6666666666 44333322 11223566889999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC--------hHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhcCcCccc
Q 009182 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVD--------YGRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (541)
Q Consensus 163 lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~--------~~~ii~~Ll~-~~~~~~~~vr~~al~wL~~l~~~~~~~l~p 233 (541)
.+.|-...||+++..+...+-+.+.+..++. ++.++|.++. +.-+.-++||..++..+-.+++.+|..+.|
T Consensus 1089 vmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP 1168 (1702)
T KOG0915|consen 1089 VMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP 1168 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc
Confidence 9999999999998887777666555443331 5677777775 344667999999999999999999999999
Q ss_pred chhhHHHHHhhhcCCCChhHHH-HH-------HHHHHHHHHhhcCCC----------CCCC---hHhHHHHHHHhcCC-C
Q 009182 234 YYADILGAILPCISDKEEKIRV-VA-------RETNEELRAIKADPA----------DGFD---VGPILSIATRQLSS-E 291 (541)
Q Consensus 234 ~l~~llp~ll~~l~d~~~~iR~-~A-------~~~~~~L~~~i~~~~----------~~~~---l~~il~~L~~~L~~-~ 291 (541)
|+|+++|.++...+.-+|.+-. .+ .++.+.+-..+..++ .+.| +++++|.+.+..++ -
T Consensus 1169 ~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV 1248 (1702)
T KOG0915|consen 1169 HFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV 1248 (1702)
T ss_pred hhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999998876665422 11 122222211111111 1233 47899999999954 5
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--cchhhHHHHHHHHHHhc
Q 009182 292 WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA--KDLQHFRQLVVFLVHNF 365 (541)
Q Consensus 292 ~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~--~~~~~f~~~m~~LL~~~ 365 (541)
+-.+|.++...+..|...++.++.||.+.++.+++....|.++.|+..-.-+++.+. +.++.+.+.+..++.-+
T Consensus 1249 gl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~ 1324 (1702)
T KOG0915|consen 1249 GLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADL 1324 (1702)
T ss_pred CCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999887667777766 34556666666666643
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.6e-16 Score=161.30 Aligned_cols=353 Identities=20% Similarity=0.255 Sum_probs=272.1
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHH-----HhH-
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL-----VKD- 102 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l-----~kd- 102 (541)
++.++..+...-+|+++.||+-.|.++.-+-++-.+.+.+++..|++...+..+|+|++|--.| +..-.+ +++
T Consensus 213 iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~ 292 (885)
T KOG2023|consen 213 IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEV 292 (885)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHH
Confidence 4445556666669999999999999998888776677889999999999999999999988777 522111 111
Q ss_pred -------hhc--------------------cc------------------------------------------------
Q 009182 103 -------IVT--------------------ES------------------------------------------------ 107 (541)
Q Consensus 103 -------i~~--------------------e~------------------------------------------------ 107 (541)
++. |.
T Consensus 293 L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLR 372 (885)
T KOG2023|consen 293 LQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLR 372 (885)
T ss_pred HHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHh
Confidence 110 00
Q ss_pred --------------chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHH
Q 009182 108 --------------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ 173 (541)
Q Consensus 108 --------------~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~ 173 (541)
+..-++.++|.|.+.+.++++.+|+..+-++|.++.-.-..+.+|+|++.+.+..+|.|..+-||+
T Consensus 373 kCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRs 452 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRS 452 (885)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceee
Confidence 124568889999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC-CC-
Q 009182 174 QADSALWEFLQEIKNSPS-VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KE- 250 (541)
Q Consensus 174 ~a~~~L~~ll~~i~~~~~-~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d-~~- 250 (541)
.+|=.|+++.+-+..... .++.+++.-++.+.-|++-.|+.+|+.....+-+-+++.++||+..|+..+..+.+. ..
T Consensus 453 ITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~K 532 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKK 532 (885)
T ss_pred eeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999887754432 457888888999999999999999999999999999999999999999999888764 32
Q ss_pred ------hhHHHHHHHHHHHHH-----H-----------hhcC--------------------------------------
Q 009182 251 ------EKIRVVARETNEELR-----A-----------IKAD-------------------------------------- 270 (541)
Q Consensus 251 ------~~iR~~A~~~~~~L~-----~-----------~i~~-------------------------------------- 270 (541)
..|+..|+++...|- + .+.+
T Consensus 533 NLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il 612 (885)
T KOG2023|consen 533 NLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRIL 612 (885)
T ss_pred ceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 234444444322110 0 0000
Q ss_pred ------------CCC-----------CCC------------h------HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 271 ------------PAD-----------GFD------------V------GPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (541)
Q Consensus 271 ------------~~~-----------~~~------------l------~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~ 309 (541)
+.. .+| . ..++..+.+.+.++-.++|.+|.-.+|.+...
T Consensus 613 ~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~ 692 (885)
T KOG2023|consen 613 QKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKA 692 (885)
T ss_pred HHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 000 001 1 23556677778899999999999999999999
Q ss_pred ChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhccc---cchhhhhhHHHHHH
Q 009182 310 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-----KDLQHFRQLVVFLVHNFRV---DNSLLEKRGALIIR 381 (541)
Q Consensus 310 ~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~-----~~~~~f~~~m~~LL~~~~~---~~~ll~~r~~~iir 381 (541)
|++.+.|+...++|.+-..++-..-.|...|+|++++|+ +..+|-.+++..|...++. ++.++|.. +.-|-
T Consensus 693 c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENt-AITIG 771 (885)
T KOG2023|consen 693 CFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENT-AITIG 771 (885)
T ss_pred HHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhh-hhhhh
Confidence 999999999999999987766556678889999999999 3467888888888887753 34566653 33343
Q ss_pred Hh
Q 009182 382 RL 383 (541)
Q Consensus 382 ~L 383 (541)
.|
T Consensus 772 rL 773 (885)
T KOG2023|consen 772 RL 773 (885)
T ss_pred hh
Confidence 34
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.6e-16 Score=167.45 Aligned_cols=320 Identities=16% Similarity=0.180 Sum_probs=242.8
Q ss_pred hhHHHHhhcCCCCHHHHH-HHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchh
Q 009182 33 IVPPVLNSFSDQDSRVRY-YACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~-~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~ 110 (541)
++..+-...+|+.+.-|. .+..+........+....+|+..++|.++....|..+.||.+| .+...+.. .-..+
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~----~~~~~ 250 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR----CLSAY 250 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH----hcCcc
Confidence 556667778888655555 5666666666666777889999999999999999999999999 55443332 22457
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 009182 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~ 190 (541)
.+..++|.+...+.+..++.+..+++.++.+....+..+..++|+++|.+...|+|+.++||+++.+++..+...+.
T Consensus 251 aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid--- 327 (569)
T KOG1242|consen 251 AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID--- 327 (569)
T ss_pred hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc---
Confidence 78899999999998889999999999999999999999999999999999999999999999999999999988776
Q ss_pred CCChHHHHHHHHHhcCCCC---------------------------------------HHHHHHHHHHHHHHHhhc--Cc
Q 009182 191 SVDYGRMAEILVQRAASPD---------------------------------------EFTRLTAITWINEFVKLG--GD 229 (541)
Q Consensus 191 ~~~~~~ii~~Ll~~~~~~~---------------------------------------~~vr~~al~wL~~l~~~~--~~ 229 (541)
+++++.++|.+++++.++. ..++..+...++.++..- +.
T Consensus 328 N~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~ 407 (569)
T KOG1242|consen 328 NPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPK 407 (569)
T ss_pred cHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHH
Confidence 4567778888887777765 245556666677777765 77
Q ss_pred CcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHH-HHHHHHHHHHHHHh
Q 009182 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEA-TRIEALHWISTLLN 308 (541)
Q Consensus 230 ~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~-~R~aal~wL~~L~~ 308 (541)
++.||+|.++|.+-..+.|..|++|..|.++.+.+.+-.+..+ ++...|.+.+.+.++... .|..+.+-+.....
T Consensus 408 ~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~----f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 408 DLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS----FDDLIPELSETLTSEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred HHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc----ccccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence 8999999999999999999999999999999998887766543 366777777777554433 57777666655554
Q ss_pred hChHHHhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhcc
Q 009182 309 RHRTEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIA-----KDLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 309 ~~~~~i~~~l~~l~p~Ll~~L~D~--~~~V~~~~~~~L~~i~-----~~~~~f~~~m~~LL~~~~ 366 (541)
+. -.++...++|.++...+.. .+.++....|++.-.- ..++|..+.+..+++..-
T Consensus 484 ~~---~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~a 545 (569)
T KOG1242|consen 484 GL---GVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLA 545 (569)
T ss_pred cc---cchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhh
Confidence 44 3345677777777665543 3335555555544322 345566666666666553
No 12
>PRK09687 putative lyase; Provisional
Probab=99.70 E-value=4e-15 Score=149.29 Aligned_cols=258 Identities=15% Similarity=0.083 Sum_probs=203.8
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
.|-..-++++...+.|++.+||..|+.+|..+.. +++++.+.+++.|+++.||..| ..|..+-. .
T Consensus 19 ~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~----~ 84 (280)
T PRK09687 19 QCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGM----A 84 (280)
T ss_pred HHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----C
Confidence 3444456778888999999999999999886642 4678889999999999999999 77666421 1
Q ss_pred cchhcHhhhHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~-l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
.......+|.|... .+|+++.||..++.+++.+.+-.. ...|..+..+...+.|+++.||..+..+|+.+
T Consensus 85 --~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~--- 155 (280)
T PRK09687 85 --KRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI--- 155 (280)
T ss_pred --ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc---
Confidence 11134558888876 688999999999999998854322 33567788888899999999999998888643
Q ss_pred hcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 186 i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
+ -+..++.|+..++++++.||..|...++.+ + ..-|...+.+...+.|.+++||..|...++.+
T Consensus 156 -~------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~- 219 (280)
T PRK09687 156 -N------DEAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR- 219 (280)
T ss_pred -C------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc-
Confidence 2 256789999999999999999999998865 1 12478899999999999999999998887754
Q ss_pred HhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 009182 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-DPSDEVVLLVLEVH 344 (541)
Q Consensus 266 ~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~-D~~~~V~~~~~~~L 344 (541)
+ -+..+|.|.+.+.+++ .|..+...++.+.. +..+|.|.+.+. ++++.|+.++.+++
T Consensus 220 ---~-------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 220 ---K-------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ---C-------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 1 2578999999998876 46777777776655 367888999997 88999999999988
Q ss_pred HH
Q 009182 345 AC 346 (541)
Q Consensus 345 ~~ 346 (541)
.+
T Consensus 278 ~~ 279 (280)
T PRK09687 278 KR 279 (280)
T ss_pred hc
Confidence 75
No 13
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-13 Score=152.97 Aligned_cols=343 Identities=17% Similarity=0.159 Sum_probs=265.4
Q ss_pred HHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHH
Q 009182 13 VEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSA 92 (541)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~ 92 (541)
+|-+..+++++..-......+.+..++..+|++|++||..++....+.+..+.+ ..+.+..+....++.|...++|.+
T Consensus 297 ~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a 374 (759)
T KOG0211|consen 297 VESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLKDEEWEVRYA 374 (759)
T ss_pred HHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhcchhhhhhHH
Confidence 455666777777743666677899999999999999999999988888877663 335677888889999999999988
Q ss_pred H-HHHHHHHhHhhcc-c-chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCH
Q 009182 93 A-HLLDRLVKDIVTE-S-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH 169 (541)
Q Consensus 93 A-~~L~~l~kdi~~e-~-~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~ 169 (541)
+ .-...++. .... + .+-..+.++|.+.+.+.|.+++||....+.+..+..+.|.+ .-++.+++.....++|..+
T Consensus 375 ~a~~~~~l~~-~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~ti~~llp~~~~~l~de~~ 451 (759)
T KOG0211|consen 375 IAKKVQKLAC-YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--RTISELLPLLIGNLKDEDP 451 (759)
T ss_pred hhcchHHHhh-hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--cCccccChhhhhhcchhhH
Confidence 8 44444443 2211 0 22346677899999999999999999999998887776632 3344556666679999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcC
Q 009182 170 EIRQQADSALWEFLQEIKNSPS--VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (541)
Q Consensus 170 eVR~~a~~~L~~ll~~i~~~~~--~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~ 247 (541)
+||......+.... ......+ ...++.+|.+.....+..|++|.+.+..+..++.-.|..+ +-+++-+.+..++.
T Consensus 452 ~V~lnli~~ls~~~-~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~--~~~~~~~l~~~~l~ 528 (759)
T KOG0211|consen 452 IVRLNLIDKLSLLE-EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF--FDEKLAELLRTWLP 528 (759)
T ss_pred HHHHhhHHHHHHHH-hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH--hhHHHHHHHHhhhh
Confidence 99998875543332 2221112 2358899999999999999999999998888877666444 35677788888999
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHH
Q 009182 248 DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK 327 (541)
Q Consensus 248 d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~ 327 (541)
|...+||++|......+....+ ..|.-..+++.+..+..++++..|.+.+..+..+++.++.++ ....++|.+..
T Consensus 529 d~v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~ 603 (759)
T KOG0211|consen 529 DHVYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLD 603 (759)
T ss_pred hhHHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHH
Confidence 9999999999988877765555 458888999999999888899999999999999999999998 46899999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhcccc
Q 009182 328 ALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVD 368 (541)
Q Consensus 328 ~L~D~~~~V~~~~~~~L~~i~~--~~~~f~~~m~~LL~~~~~~ 368 (541)
..+|+.++||..+++.+..|.+ ..+--+..+..++..+..|
T Consensus 604 l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d 646 (759)
T KOG0211|consen 604 LVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSD 646 (759)
T ss_pred hccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccC
Confidence 9999999999999999999883 2334455555555555434
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.64 E-value=5e-14 Score=163.07 Aligned_cols=265 Identities=20% Similarity=0.151 Sum_probs=197.4
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
-++.+...|.|+|+.||..|+++|..+.. ++.++.|.++++|++++||..| .+|.++.+... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----~-- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----P-- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----c--
Confidence 45678899999999999999999987642 4568888899999999999999 77766533111 1
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~ 191 (541)
.+.+.+.+.++++.||..++.+++.+..-. ...+.+.+.|++++||.+|..+|+.+ +.
T Consensus 686 ----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~----~~--- 743 (897)
T PRK13800 686 ----APALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSV----DD--- 743 (897)
T ss_pred ----hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcc----cC---
Confidence 356777888999999999999998865211 12355689999999999998888764 11
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC
Q 009182 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~ 271 (541)
.+.++....|+++.||..+...|+.+..- -+..++.+...+.|+++.||..|..+++.+. .
T Consensus 744 ------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g----~- 804 (897)
T PRK13800 744 ------VESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELG----C- 804 (897)
T ss_pred ------cHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcC----C-
Confidence 13466778999999999999888765321 1233677888899999999999988877551 1
Q ss_pred CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcch
Q 009182 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL 351 (541)
Q Consensus 272 ~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~ 351 (541)
-+.+.+.+...+.+++|.+|.+|+..|+.+.. +.-++.|++.|+|++..||..+.++|+++...
T Consensus 805 -----~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~- 868 (897)
T PRK13800 805 -----PPDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPGD- 868 (897)
T ss_pred -----cchhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCC-
Confidence 12345668888999999999999999876531 34558899999999999999999999998422
Q ss_pred hhHHHHHHHHHHhccccchhhh
Q 009182 352 QHFRQLVVFLVHNFRVDNSLLE 373 (541)
Q Consensus 352 ~~f~~~m~~LL~~~~~~~~ll~ 373 (541)
+ .....|.+.+.++..-++
T Consensus 869 ~---~a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 869 P---AARDALTTALTDSDADVR 887 (897)
T ss_pred H---HHHHHHHHHHhCCCHHHH
Confidence 1 233334444555544333
No 15
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.2e-13 Score=156.21 Aligned_cols=359 Identities=18% Similarity=0.235 Sum_probs=256.3
Q ss_pred hhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-hhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHh
Q 009182 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (541)
Q Consensus 26 ~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~-~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi 103 (541)
++.|+++|...++..++++.||||.++|.|+..+.+.-. .++...+++++..+++..+|-..+||++| .+.+.+.|-+
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999886532 35567788999999999999999999999 5444333322
Q ss_pred hc-----c--cchhcHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHH---
Q 009182 104 VT-----E--SDQFSIEEFIPLLR-ERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR--- 172 (541)
Q Consensus 104 ~~-----e--~~~~~l~~~iP~L~-e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR--- 172 (541)
+. + .+...++.++|.|. +.+-+..+.||.+.++.+.-+.+..|..+-+|+|++.+.|....+.-.+.|-
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHH
Confidence 21 1 24567888999887 5566788999999999999999999999999999999999988876655441
Q ss_pred -----HHHHHHHHHHHHHhcC-CC----------CCC---hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCcc
Q 009182 173 -----QQADSALWEFLQEIKN-SP----------SVD---YGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLV 232 (541)
Q Consensus 173 -----~~a~~~L~~ll~~i~~-~~----------~~~---~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~~~~~l~ 232 (541)
....++++.+=.++.+ .+ ..| +++++|.+.+..+.+ .-..|-.|...+..++.-.|.++.
T Consensus 1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence 1111233333222111 11 123 578888888887765 344567777778778888999999
Q ss_pred cchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHH-HhcCCCCHHHHHHHHHHHHHHHhhCh
Q 009182 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIAT-RQLSSEWEATRIEALHWISTLLNRHR 311 (541)
Q Consensus 233 p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~-~~L~~~~~~~R~aal~wL~~L~~~~~ 311 (541)
||..+++.+++++..|.++.+|.....+.|.|.+.-..+ .....+..+. ..+.+.+... ..+...+..++...+
T Consensus 1273 P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d----q~qKLie~~l~~~l~k~es~~-siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD----QMQKLIETLLADLLGKDESLK-SISCATISNIANYSQ 1347 (1702)
T ss_pred cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHhccCCCcc-chhHHHHHHHHHhhH
Confidence 999999999999999999999999999999997654332 1345555544 4444433322 334444444999999
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcch----h-hHHHHHHHHHHhccccc-hhhhhhHHHHHHHhhc
Q 009182 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL----Q-HFRQLVVFLVHNFRVDN-SLLEKRGALIIRRLCV 385 (541)
Q Consensus 312 ~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~----~-~f~~~m~~LL~~~~~~~-~ll~~r~~~iir~Lc~ 385 (541)
+.+.+|...++|.+.=...+...+-...=-++|..+++++ + |...++..+.....++. =-+..-+.--+|+.|.
T Consensus 1348 e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1348 EMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence 9999999999998776666653333333335677777321 2 66666666666554443 3334455667777777
Q ss_pred cCCh
Q 009182 386 LLDA 389 (541)
Q Consensus 386 ~l~~ 389 (541)
.++.
T Consensus 1428 ~~ss 1431 (1702)
T KOG0915|consen 1428 GLSS 1431 (1702)
T ss_pred cccc
Confidence 6653
No 16
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.3e-14 Score=150.92 Aligned_cols=334 Identities=14% Similarity=0.115 Sum_probs=242.4
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHH-HHHHH-HHHHHHHhHhhcccc
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDAN-VQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~-VR~~A-~~L~~l~kdi~~e~~ 108 (541)
+++..-+++.|+.+.++++..|+.++..|+..-=+ ...|++++..+..-+.+.++. ||+++ +++.-+|+++..+.-
T Consensus 89 eqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP--~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl 166 (859)
T KOG1241|consen 89 EQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP--QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL 166 (859)
T ss_pred HHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc--hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH
Confidence 34667789999999999999999999888753211 256899999999888888776 99999 999999998876522
Q ss_pred hhcHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCchhhh--chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 109 QFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~~~~~l~~--~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
...-+.++-.+...++. ++..||..+..++..=....+.+|-. --+-|+...+..-.-++.+||.+|-.||.++..
T Consensus 167 ~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 167 EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence 22345556666666665 57799999998876432222211111 111234445555566788999999888887764
Q ss_pred HhcCCCCCChH-HHHHHHHHhcCCCCHHHHHHHH-HHHHHHHhh------cCcCcc----c--------chhhHHHHHhh
Q 009182 185 EIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAI-TWINEFVKL------GGDQLV----P--------YYADILGAILP 244 (541)
Q Consensus 185 ~i~~~~~~~~~-~ii~~Ll~~~~~~~~~vr~~al-~wL~~l~~~------~~~~l~----p--------~l~~llp~ll~ 244 (541)
..-....+++. .+.++-+..+++++++|+..++ +|-....+- .++..- | -++.++|.+++
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~ 326 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE 326 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence 33211112332 2555566678899999999888 465322211 111111 1 24489999999
Q ss_pred hcCCCCh-------hHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-ChHHHhh
Q 009182 245 CISDKEE-------KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLH 316 (541)
Q Consensus 245 ~l~d~~~-------~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~-~~~~i~~ 316 (541)
.|...++ ++-.+|..|+.-+.+.++++ -.+.++|.+.+.+++++|..|.+|..++|-+.++ ++....|
T Consensus 327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~----Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~ 402 (859)
T KOG1241|consen 327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD----IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTP 402 (859)
T ss_pred HHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc----chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhH
Confidence 8876332 35667788887777777653 2578999999999999999999999999877666 6777899
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-------chhhHHHHHHHHHHhccccch
Q 009182 317 FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 317 ~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-------~~~~f~~~m~~LL~~~~~~~~ 370 (541)
..++.+|.+++.++|++-.|+..+.|++++|++ ++.+....+..+++-+.++.+
T Consensus 403 iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePr 463 (859)
T KOG1241|consen 403 IVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPR 463 (859)
T ss_pred HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCch
Confidence 999999999999999999999999999999993 577888899999988887764
No 17
>PRK09687 putative lyase; Provisional
Probab=99.56 E-value=1.4e-12 Score=130.88 Aligned_cols=235 Identities=17% Similarity=0.147 Sum_probs=179.7
Q ss_pred HHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch
Q 009182 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (541)
Q Consensus 75 ~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l 153 (541)
.+.|.+++.|++..||..| .+|..+ .. +...+.+.+.+.++++.+|..++..++.+..-... .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~----~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR----GG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----Cc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 4566777899999999999 665432 11 23477788888999999999999999998643211 3
Q ss_pred HHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc
Q 009182 154 PDFLDGLFNM-LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (541)
Q Consensus 154 p~~L~~L~~l-L~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~ 232 (541)
+..++.|..+ +.|++++||..|..+|+.+... . .......++.+.....|+++.||..+...++.+-
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~---~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKK---N-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc---c-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------
Confidence 4556666656 7899999999999999887421 1 1124567778888889999999999988876431
Q ss_pred cchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChH
Q 009182 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (541)
Q Consensus 233 p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~ 312 (541)
-+..++.+++.+.|++++||..|..++|.+ . .+-+.+++.|...+.++++.+|.+|+..|+.+..
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~-----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSN----K-----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C-----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC----
Confidence 267889999999999999999999888765 1 1236788999999999999999999999887432
Q ss_pred HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 009182 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNF 365 (541)
Q Consensus 313 ~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~ 365 (541)
+..+|.|++.|.|++ ++..++++|++|.. +..++.|.++.
T Consensus 222 ------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----~~a~p~L~~l~ 261 (280)
T PRK09687 222 ------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----KTLLPVLDTLL 261 (280)
T ss_pred ------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----HhHHHHHHHHH
Confidence 467899999999977 77789999999985 24444444444
No 18
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.55 E-value=1.2e-10 Score=127.13 Aligned_cols=312 Identities=16% Similarity=0.214 Sum_probs=215.8
Q ss_pred HHHhhhhhhcchhhhhc--------chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHh-hcCC
Q 009182 15 QFLLYADLFFYSETILQ--------QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-SADS 85 (541)
Q Consensus 15 ~~~~~~~~~~~~~~~l~--------~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl-~~D~ 85 (541)
|+|...|+|.+..+-.. .++..+++.+.|++.+|..-|..+++-+++-.+.. ....+.+.||.. +++.
T Consensus 22 RfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~~ve~L~~~~~s~k 98 (1233)
T KOG1824|consen 22 RFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLETIVENLCSNMLSGK 98 (1233)
T ss_pred hhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHHHHHHHhhhhccch
Confidence 56777777776655432 26788899999999999999999999888655433 345666666643 3433
Q ss_pred CHHHHHHH-HHHHHH----------------H--------hHhhcc--------------------cchh---cHhhhHH
Q 009182 86 DANVQSAA-HLLDRL----------------V--------KDIVTE--------------------SDQF---SIEEFIP 117 (541)
Q Consensus 86 d~~VR~~A-~~L~~l----------------~--------kdi~~e--------------------~~~~---~l~~~iP 117 (541)
++. |.-+ ..|... | ..+... -+.. .-..+..
T Consensus 99 eq~-rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~ 177 (1233)
T KOG1824|consen 99 EQL-RDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILK 177 (1233)
T ss_pred hhh-ccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHH
Confidence 331 2211 111111 0 111100 0000 0111122
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhcCCCCCChH
Q 009182 118 LLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD--SSHEIRQQADSALWEFLQEIKNSPSVDYG 195 (541)
Q Consensus 118 ~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D--~~~eVR~~a~~~L~~ll~~i~~~~~~~~~ 195 (541)
.+.--++.+...||+-++.+++.++...+.+... .+.+.|.+-|+. ...++|... ++++.+++..|.....+.+
T Consensus 178 ~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~---~li~~Ll~~L~~~~q~~~~rt~I-q~l~~i~r~ag~r~~~h~~ 253 (1233)
T KOG1824|consen 178 CLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV---ELIEHLLKGLSNRTQMSATRTYI-QCLAAICRQAGHRFGSHLD 253 (1233)
T ss_pred HHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHhccCCCCchHHHHHHH-HHHHHHHHHhcchhhcccc
Confidence 2222234456788999999999998887765433 333344445544 345667766 8999999988877777899
Q ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC-C-------h-------------
Q 009182 196 RMAEILVQRA---ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-E-------E------------- 251 (541)
Q Consensus 196 ~ii~~Ll~~~---~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~-~-------~------------- 251 (541)
.++|.+.+.+ +..+++.|..+++.+..|..-++.++.||.|.++...++.++|. + +
T Consensus 254 ~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde 333 (1233)
T KOG1824|consen 254 KIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDE 333 (1233)
T ss_pred hhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccch
Confidence 9999999988 67789999999999999999999999999999999999998863 1 0
Q ss_pred -------------hHHHHHHHHHHHHHH-----------h-----hc----------------------C---------C
Q 009182 252 -------------KIRVVARETNEELRA-----------I-----KA----------------------D---------P 271 (541)
Q Consensus 252 -------------~iR~~A~~~~~~L~~-----------~-----i~----------------------~---------~ 271 (541)
.||.+|.++...+.- . +. . +
T Consensus 334 ~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d 413 (1233)
T KOG1824|consen 334 QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLAD 413 (1233)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccC
Confidence 178888887665420 0 00 0 0
Q ss_pred -------CCCCC-------hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH
Q 009182 272 -------ADGFD-------VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD 334 (541)
Q Consensus 272 -------~~~~~-------l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~ 334 (541)
+...+ ...++.++.+++++.+..+|..++..+..+....|+...+|++.++|.+...|+|.+.
T Consensus 414 ~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSs 490 (1233)
T KOG1824|consen 414 NDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSS 490 (1233)
T ss_pred chhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccc
Confidence 00111 2467888999998888889999999999999999999999999999999999999854
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.55 E-value=9.8e-13 Score=152.43 Aligned_cols=245 Identities=18% Similarity=0.165 Sum_probs=188.2
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
...++.+...+.|+++.||.+|+.+|..+++... --+.|.+.++|+++.||.+| ..|..+- . +.
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~----~--~~ 715 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---------PAPALRDHLGSPDPVVRAAALDVLRALR----A--GD 715 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---------chHHHHHHhcCCCHHHHHHHHHHHHhhc----c--CC
Confidence 4567889999999999999999999988754221 12456677889999999998 6655531 1 11
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
.+.+...+.|+++.||..++.+++.+... +.|...+.|++++||..+...|+.+-..
T Consensus 716 ------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~-------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~---- 772 (897)
T PRK13800 716 ------AALFAAALGDPDHRVRIEAVRALVSVDDV-------------ESVAGAATDENREVRIAVAKGLATLGAG---- 772 (897)
T ss_pred ------HHHHHHHhcCCCHHHHHHHHHHHhcccCc-------------HHHHHHhcCCCHHHHHHHHHHHHHhccc----
Confidence 24566788999999999999999876321 2355689999999999999998876421
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc
Q 009182 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~ 269 (541)
-..-++.+....+|+++.||..|+..|+.+- .. +.+.+.+...+.|+++.||..|.++++.+-
T Consensus 773 ----~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g---~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~---- 835 (897)
T PRK13800 773 ----GAPAGDAVRALTGDPDPLVRAAALAALAELG---CP------PDDVAAATAALRASAWQVRQGAARALAGAA---- 835 (897)
T ss_pred ----cchhHHHHHHHhcCCCHHHHHHHHHHHHhcC---Cc------chhHHHHHHHhcCCChHHHHHHHHHHHhcc----
Confidence 1123677778889999999999998887552 11 234466788899999999999988887541
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009182 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (541)
Q Consensus 270 ~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~ 346 (541)
-++.++.|...+.++++.+|.+|...|+.+ . .-+...+.|.+.++|++++||..+.++|..
T Consensus 836 -------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~--------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 836 -------ADVAVPALVEALTDPHLDVRKAAVLALTRW-P--------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred -------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc-C--------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 245678899999999999999999999885 1 123557778899999999999999988863
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.45 E-value=5.5e-11 Score=130.44 Aligned_cols=346 Identities=18% Similarity=0.217 Sum_probs=229.8
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
..-+++.+.+-++|+++.+|..|..++.++. ..++ .+.+.+.+.+++.|+++.||+.| .++.++.+.-..
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~---~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--- 147 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEM---AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--- 147 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHH---HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccch---hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---
Confidence 4446688899999999999999888888765 3333 36788899999999999999999 777777763211
Q ss_pred hhcHhh-hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 109 QFSIEE-FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 109 ~~~l~~-~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
.++. ++|.+.+.+.|+++.|+..++..+..+ +.++......+|.+.+.|.++++++++-++....+.+..+..
T Consensus 148 --~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~--- 221 (526)
T PF01602_consen 148 --LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP--- 221 (526)
T ss_dssp --CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS---
T ss_pred --HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc---
Confidence 2333 799999999999999999999999988 444443347788888888888899999888777666554431
Q ss_pred CCCCCCh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 188 NSPSVDY--GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 188 ~~~~~~~--~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
....+. ..+++.+....++.++.|...|+..+..+ .+..- ....+++.+...+.++++++|-.+.++...+.
T Consensus 222 -~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l---~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 222 -MEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKL---SPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQLA 295 (526)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred -CChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHh---hcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence 100112 46888888888888888888877665433 33221 56788999999999999999988877665552
Q ss_pred HhhcCCCCCCChHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 009182 266 AIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEV 343 (541)
Q Consensus 266 ~~i~~~~~~~~l~~il~~L~~~L-~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~ 343 (541)
..... .+.. .......+ .+++..+|..++..+..+.... -...+++.+++.+++. +++++..++..
T Consensus 296 ---~~~~~--~v~~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~------n~~~Il~eL~~~l~~~~d~~~~~~~i~~ 363 (526)
T PF01602_consen 296 ---QSNPP--AVFN-QSLILFFLLYDDDPSIRKKALDLLYKLANES------NVKEILDELLKYLSELSDPDFRRELIKA 363 (526)
T ss_dssp ---CHCHH--HHGT-HHHHHHHHHCSSSHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred ---cccch--hhhh-hhhhhheecCCCChhHHHHHHHHHhhccccc------chhhHHHHHHHHHHhccchhhhhhHHHH
Confidence 22100 0111 11122233 4778889999999888887643 2344677777777555 66789999999
Q ss_pred HHHHh-cchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhcccCChHH
Q 009182 344 HACIA-KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGEADLDF 408 (541)
Q Consensus 344 L~~i~-~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~~~~d~~f 408 (541)
++.++ ...+.++..+..+++++.........-.-..++++...-+. +.+-..+.+.+.+.++-++
T Consensus 364 I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~ 431 (526)
T PF01602_consen 364 IGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEA 431 (526)
T ss_dssp HHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHH
T ss_pred HHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHH
Confidence 99988 34556666777777777644333332223333333333222 3444555555555444443
No 21
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.44 E-value=9.6e-11 Score=124.84 Aligned_cols=368 Identities=15% Similarity=0.198 Sum_probs=252.1
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHhhc-
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT- 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi~~- 105 (541)
-+|+..++..+-.++.|.+..||-.++.++..+++.+.+-....|++++..|.+.+... ++..|..++|.+..
T Consensus 548 lphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~h------rgk~laafLkAigyl 621 (1172)
T KOG0213|consen 548 LPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQH------RGKELAAFLKAIGYL 621 (1172)
T ss_pred hhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHc------cChHHHHHHHHHhhc
Confidence 37888899999999999999999999999999999887766677889999998866432 22445556665442
Q ss_pred ------ccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh----hchHHHHHHHH--HH----------
Q 009182 106 ------ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML----GFLPDFLDGLF--NM---------- 163 (541)
Q Consensus 106 ------e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~----~~lp~~L~~L~--~l---------- 163 (541)
+.....-...+-++..-+..++.+.++.++..+.+.+..-|.+-. ..+|.|+.... .+
T Consensus 622 iplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykql 701 (1172)
T KOG0213|consen 622 IPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQL 701 (1172)
T ss_pred cccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhH
Confidence 112233344566667777889999999999999888877665422 34555543322 12
Q ss_pred -----------------------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCC---hHHHHHHHHHhcCCCCHHHHHHHH
Q 009182 164 -----------------------LSDSSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEFTRLTAI 217 (541)
Q Consensus 164 -----------------------L~D~~~eVR~~a~~~L~~ll~~i~~~~~~~---~~~ii~~Ll~~~~~~~~~vr~~al 217 (541)
+.|.++.-|+.+..........++.. +.| -+.++.-++...++++.+.. ..+
T Consensus 702 v~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~-diderleE~lidgil~Afqeqtt~d~-vml 779 (1172)
T KOG0213|consen 702 VDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA-DIDERLEERLIDGILYAFQEQTTEDS-VML 779 (1172)
T ss_pred HHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHhcccchh-hhh
Confidence 22333444555555555555444321 111 23444444444444332222 223
Q ss_pred HHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHH
Q 009182 218 TWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRI 297 (541)
Q Consensus 218 ~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~ 297 (541)
..++..++..+..+.||+|+|...++..+....+.+|+.|.+..+.+....+..++.--++.+=.+|-+.+..+..++=-
T Consensus 780 ~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLg 859 (1172)
T KOG0213|consen 780 LGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLG 859 (1172)
T ss_pred hhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHH
Confidence 34555566667778999999999999999999999999999999888766655432222233334667778877777888
Q ss_pred HHHHHHHHHHhhC-hHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcch-h-----hHHHHHHHHHHhccccch
Q 009182 298 EALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-Q-----HFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 298 aal~wL~~L~~~~-~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~-~-----~f~~~m~~LL~~~~~~~~ 370 (541)
+.+.++..+.... ..++.|-..+++|.|...|+.....|...+..+++.|+... + ..-.+.=+|+++++..++
T Consensus 860 sILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887765 56788889999999999999999999999999999999432 2 234566788888877766
Q ss_pred hhhhhHHHHHHHhhccCChhhHHHHHHHHhcc
Q 009182 371 LLEKRGALIIRRLCVLLDAERVYRELSTILEG 402 (541)
Q Consensus 371 ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~ 402 (541)
-.++.+.--+--+.+-+||+.|.-++-+=|+.
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkv 971 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKV 971 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchH
Confidence 55544444555566777887776666655544
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.3e-09 Score=114.18 Aligned_cols=379 Identities=16% Similarity=0.162 Sum_probs=258.8
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHH-HHHHHHHhhcCCCHHHHHHH-HHHHHHHhH--
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQ-IFDALCKLSADSDANVQSAA-HLLDRLVKD-- 102 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~-i~~~L~kl~~D~d~~VR~~A-~~L~~l~kd-- 102 (541)
+..-+.|...+...=+-+|.+||.+|-.+|-.|+.-.-.-+.+|+.+ +|+.-.+.+..++.+|.-.| +.=+.+|++
T Consensus 212 E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEi 291 (859)
T KOG1241|consen 212 EMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI 291 (859)
T ss_pred HhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 44566677888888899999999999888776664333333444433 44444444444444444433 221211110
Q ss_pred ------------------------------------hhc------------------------c-cchhcHhhhHHHHHH
Q 009182 103 ------------------------------------IVT------------------------E-SDQFSIEEFIPLLRE 121 (541)
Q Consensus 103 ------------------------------------i~~------------------------e-~~~~~l~~~iP~L~e 121 (541)
+.. + .++.-++.++|.+.+
T Consensus 292 D~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee 371 (859)
T KOG1241|consen 292 DLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEE 371 (859)
T ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHH
Confidence 000 0 024556788888888
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC----------
Q 009182 122 RMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP---------- 190 (541)
Q Consensus 122 ~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~---------- 190 (541)
-++.+|++-|..++-.++.+-.-|..+ +.++.+.-++++.++++|++--||..+.-+++++.+.+....
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 888999999999999998877766554 778899999999999999999999888888888877665321
Q ss_pred -----------------------------------------CCChHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHhh
Q 009182 191 -----------------------------------------SVDYGRMAEILVQRAASP---DEFTRLTAITWINEFVKL 226 (541)
Q Consensus 191 -----------------------------------------~~~~~~ii~~Ll~~~~~~---~~~vr~~al~wL~~l~~~ 226 (541)
.+.++.|+.-|++.+... +...|.+|.+.+.++++.
T Consensus 452 ~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~ 531 (859)
T KOG1241|consen 452 SALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN 531 (859)
T ss_pred HHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence 123677777787766543 456788899999999999
Q ss_pred cCcCcccchhhHHHHHhhhcCC---------CC----hhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC-CC
Q 009182 227 GGDQLVPYYADILGAILPCISD---------KE----EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS-EW 292 (541)
Q Consensus 227 ~~~~l~p~l~~llp~ll~~l~d---------~~----~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~-~~ 292 (541)
++.+..|-..++.+.++.-+.. ++ .++...-..+++.+.+.+..+ ..-.-+.++..+.+.+.+ .+
T Consensus 532 st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~-~~~~~d~iM~lflri~~s~~s 610 (859)
T KOG1241|consen 532 STDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD-IREVSDQIMGLFLRIFESKRS 610 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc-chhHHHHHHHHHHHHHcCCcc
Confidence 9988877777777766663321 11 111111222333333333331 111236788888888877 44
Q ss_pred HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhc-----chhhHHHHHHHHHHhcc
Q 009182 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 293 ~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~-~V~~~~~~~L~~i~~-----~~~~f~~~m~~LL~~~~ 366 (541)
..+.+.|+..++.+.+..++++..|.+.+.|+|...|+.-.+ .|-..+..+.+.++. --+|=+.+|..|++.++
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Ls 690 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLS 690 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcc
Confidence 557899999999999999999999999999999999976655 455577888888882 24567789999999987
Q ss_pred ccchhhhhhHHHHHHHhhccCChhhHHHHHHHH-hcccCCh-HHHHHHHHHhHHhh
Q 009182 367 VDNSLLEKRGALIIRRLCVLLDAERVYRELSTI-LEGEADL-DFACTMVQALNLIL 420 (541)
Q Consensus 367 ~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~i-l~~~~d~-~f~~~~v~~L~~il 420 (541)
+.+- .| .+. -.|...|++| |.-+.|+ ++.+..+..|+.+.
T Consensus 691 s~~~---hR----------~vK-P~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 691 SPNL---HR----------NVK-PAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred Cccc---cc----------ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6642 11 111 2567777777 4455676 77888888888887
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.43 E-value=5.1e-10 Score=122.27 Aligned_cols=400 Identities=15% Similarity=0.146 Sum_probs=282.1
Q ss_pred HHHHHHHhhhhhhcchhhhhcchhHHHHhhc---CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhc-CCC
Q 009182 11 IIVEQFLLYADLFFYSETILQQIVPPVLNSF---SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSD 86 (541)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l---~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~-D~d 86 (541)
.|..|++ +..+.|++.++|.+..+. +..+.+.|.+..+++..+...+..++.++|+++...+.+.++ ||+
T Consensus 239 ~i~r~ag------~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 239 AICRQAG------HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred HHHHHhc------chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCC
Confidence 4455555 666789999999999998 788899999999999999998889999999999988765321 111
Q ss_pred ---------------------------------HHHHHHH-HHHHHHHhHhhcccc--hhcHhhhHHHHHHHhcCCCHHH
Q 009182 87 ---------------------------------ANVQSAA-HLLDRLVKDIVTESD--QFSIEEFIPLLRERMNVLNPYV 130 (541)
Q Consensus 87 ---------------------------------~~VR~~A-~~L~~l~kdi~~e~~--~~~l~~~iP~L~e~l~d~~~~v 130 (541)
--||.+| ..+..++- +..+ ..-...+-|.+..++++....|
T Consensus 313 y~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is---SR~E~L~~~~q~l~p~lI~RfkEREEnV 389 (1233)
T KOG1824|consen 313 YNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS---SRLEMLPDFYQTLGPALISRFKEREENV 389 (1233)
T ss_pred CCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh---ccHHHHHHHHHHhCHHHHHHHHHHhhhH
Confidence 1367777 55554421 1100 1123455688888888888888
Q ss_pred HHHHHHHHHHhhc-CC-----------------C---chhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 131 RQFLVGWITVLDS-VP-----------------D---IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 131 R~~a~~~l~~L~~-~~-----------------~---~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
|.-++...-.+-. ++ + .-+..-.|.+.+.+-+-+++.+---|..+-..|.+++...+..
T Consensus 390 k~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~ 469 (1233)
T KOG1824|consen 390 KADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGA 469 (1233)
T ss_pred HHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcch
Confidence 8887776544311 11 1 0122345566666666666444346777777788777766554
Q ss_pred CCCChHHHHHHHHHhcCCCC--HHHHHHHHHHH-HHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 009182 190 PSVDYGRMAEILVQRAASPD--EFTRLTAITWI-NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~--~~vr~~al~wL-~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~ 266 (541)
...+++.++|-+.....|.+ ...+..++..+ ..+...+++.+.||++.+.|.+..+.+|+-+.|-..|..+++++.+
T Consensus 470 l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvk 549 (1233)
T KOG1824|consen 470 LAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVK 549 (1233)
T ss_pred hhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHH
Confidence 45678999999999988775 45577777544 4567788999999999999999999999999998888888899988
Q ss_pred hhcCCC--C----CCChHhHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHH
Q 009182 267 IKADPA--D----GFDVGPILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL 338 (541)
Q Consensus 267 ~i~~~~--~----~~~l~~il~~L~~~L--~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~ 338 (541)
.+.... . ..++.++.....+.| .+.+.++|++|+.+++++....++.....++..+|.+++.|..+ -.|.
T Consensus 550 virpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--iTRl 627 (1233)
T KOG1824|consen 550 VIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--ITRL 627 (1233)
T ss_pred HhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--hHHH
Confidence 875421 1 223567777777777 45678899999999999999999888888999999999888754 4678
Q ss_pred HHHHHHHHHhcc------hhhHHHHHHHHHHhccccchhhhh----hHHHHHHHhhccCChhhHHHHHHHHhc--ccCCh
Q 009182 339 LVLEVHACIAKD------LQHFRQLVVFLVHNFRVDNSLLEK----RGALIIRRLCVLLDAERVYRELSTILE--GEADL 406 (541)
Q Consensus 339 ~~~~~L~~i~~~------~~~f~~~m~~LL~~~~~~~~ll~~----r~~~iir~Lc~~l~~e~i~~~l~~il~--~~~d~ 406 (541)
.+.+++..|+.. ...+.++++.+.+.++.+.+-++- .-..++.+.....+++.+=..+.++.. .++|+
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdl 707 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDL 707 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHH
Confidence 888999998832 456677778887777655443321 122366777777777655555555532 34666
Q ss_pred HHHHHHHHHhHHhhc
Q 009182 407 DFACTMVQALNLILL 421 (541)
Q Consensus 407 ~f~~~~v~~L~~il~ 421 (541)
..++.-+..|.....
T Consensus 708 hvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 708 HVTQLAVAFLTTLAI 722 (1233)
T ss_pred HHHHHHHHHHHHHHh
Confidence 665555555554443
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=2.6e-10 Score=125.05 Aligned_cols=348 Identities=17% Similarity=0.143 Sum_probs=237.6
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
+...+...+.+++.+..+|...|+.+-.++..+...-.+ ...-+...+.|-++++++.+|..| ..+.++..
T Consensus 37 G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---- 108 (526)
T PF01602_consen 37 GYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT---- 108 (526)
T ss_dssp T---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S----
T ss_pred CCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc----
Confidence 556677889999999999999999998777766543222 123567778888999999999998 77776542
Q ss_pred ccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD-FLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~-~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
..-.+.++|.+.+.+.|++|.||+.|+.++..+....+. .++. +.+.+.+++.|+++.|+.+|..++..+ +
T Consensus 109 ---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 109 ---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD----LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC----CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred ---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c
Confidence 233567899999999999999999999999988776543 2333 677888899999999999998888777 1
Q ss_pred HhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 185 ~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
.-......-++.+++.+.+...++++..+..++..+..++...+..... ..+++.+.+.+.+..+.|.-.|.++...+
T Consensus 181 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 181 CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 1110000114556666666668889999988888777554322221100 46788888888776777765555544332
Q ss_pred HHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009182 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (541)
Q Consensus 265 ~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L 344 (541)
.... .....+++.+...+.+.+...|..++.++..+....++.+. +.... +.....|+++.||..+++++
T Consensus 259 ---~~~~---~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 259 ---SPSP---ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI---LFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp ---SSSH---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH---HHHHHCSSSHHHHHHHHHHH
T ss_pred ---hcch---HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhh---hheecCCCChhHHHHHHHHH
Confidence 2211 12467888999999999999999999999999999977775 22222 22333588899999999999
Q ss_pred HHHhcchhhHHHHHHHHHHhcc-ccchhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhccc
Q 009182 345 ACIAKDLQHFRQLVVFLVHNFR-VDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGE 403 (541)
Q Consensus 345 ~~i~~~~~~f~~~m~~LL~~~~-~~~~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~~~ 403 (541)
..++. +.....++..|++.++ .+..-.....-.-|+.+|....+ +.....+-+++...
T Consensus 329 ~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~ 389 (526)
T PF01602_consen 329 YKLAN-ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS 389 (526)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT
T ss_pred hhccc-ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc
Confidence 99994 6778889999999883 32222333333344455544433 44555555555543
No 25
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.35 E-value=2.5e-09 Score=114.28 Aligned_cols=376 Identities=14% Similarity=0.091 Sum_probs=269.8
Q ss_pred HHHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch-hhh-hHHHHHHHHHHHhhcCCCHHH
Q 009182 12 IVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFI-IFFNQIFDALCKLSADSDANV 89 (541)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~-~~~-~~~~~i~~~L~kl~~D~d~~V 89 (541)
.++-...+|+++.. .+++..++.-+.|....-|+.+++.+..|+...+. .+- .--..++++++-.++..+.++
T Consensus 701 lv~ttv~ia~KvG~-----~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d 775 (1172)
T KOG0213|consen 701 LVDTTVEIAAKVGS-----DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED 775 (1172)
T ss_pred HHHHHHHHHHHhCc-----hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch
Confidence 45556667777766 46778888889999999999999999988877642 221 223467888887776554444
Q ss_pred HHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc----hhhhchHHHHHHHHHHcC
Q 009182 90 QSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI----DMLGFLPDFLDGLFNMLS 165 (541)
Q Consensus 90 R~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~----~l~~~lp~~L~~L~~lL~ 165 (541)
.---..+...++.+.... ...++.++..+..+++.+.+.||+.+...++.++.+... .++.|+..+ |...+.
T Consensus 776 ~vml~gfg~V~~~lg~r~-kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv---LyEylg 851 (1172)
T KOG0213|consen 776 SVMLLGFGTVVNALGGRV-KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV---LYEYLG 851 (1172)
T ss_pred hhhhhhHHHHHHHHhhcc-ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH---HHHhcC
Confidence 311122333444444322 234778888889999999999999999999988776543 366666653 456889
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCC-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chhhHHHHHh
Q 009182 166 DSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAIL 243 (541)
Q Consensus 166 D~~~eVR~~a~~~L~~ll~~i~~~-~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p-~l~~llp~ll 243 (541)
...+||--....++..+...++.. ..+.+..++|.+...+++.++.|+.+++..++.++.-+++-+-+ =.-+|==.++
T Consensus 852 eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl 931 (1172)
T KOG0213|consen 852 EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL 931 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 999999888888888887777532 23557889999999999999999999999999998887762210 1223444667
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhhcCC-------------------CCCC---------ChHhHHHHHHHhcCCCCHHH
Q 009182 244 PCISDKEEKIRVVARETNEELRAIKADP-------------------ADGF---------DVGPILSIATRQLSSEWEAT 295 (541)
Q Consensus 244 ~~l~d~~~~iR~~A~~~~~~L~~~i~~~-------------------~~~~---------~l~~il~~L~~~L~~~~~~~ 295 (541)
..++....+||.+|.++.|-+.+.++.. +..+ ..=.++|+|......++..+
T Consensus 932 elLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nV 1011 (1172)
T KOG0213|consen 932 ELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANV 1011 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHH
Confidence 7777788999999999888877765521 0001 11268899999999999889
Q ss_pred HHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc------chhhHHHHHHHHHHhccccc
Q 009182 296 RIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDN 369 (541)
Q Consensus 296 R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~------~~~~f~~~m~~LL~~~~~~~ 369 (541)
.-.+|+.+..+.+.-++--..|...+.|.|-..|.|.++.-|+.++.++..++- +++-+..++.-+---+-+..
T Consensus 1012 QnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1012 QNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred HHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCC
Confidence 999999999999988877788999999999999999999999999999999982 34444444444433333334
Q ss_pred hhhhhhHHHHHHHhhccCChhhHHHHH
Q 009182 370 SLLEKRGALIIRRLCVLLDAERVYREL 396 (541)
Q Consensus 370 ~ll~~r~~~iir~Lc~~l~~e~i~~~l 396 (541)
..+..+...-+-.+...+|+..++.+.
T Consensus 1092 Phviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred hHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 444445555566666666666665543
No 26
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.34 E-value=6.5e-09 Score=108.55 Aligned_cols=312 Identities=14% Similarity=0.124 Sum_probs=202.3
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCH-HHHHHH-HHHHHHHhHhhccc-
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA-NVQSAA-HLLDRLVKDIVTES- 107 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~-~VR~~A-~~L~~l~kdi~~e~- 107 (541)
+++..-.++.++.+.+|.-.+|+..+..|+..--+. ..|++++..+.+-+.|.+| +++..+ ..++..|+.-..+.
T Consensus 93 ~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~--~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~l 170 (858)
T COG5215 93 EQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPN--SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDL 170 (858)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcc--ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHH
Confidence 345566789999999999999999999888643222 3478888888888887776 555555 66666654111100
Q ss_pred chhcHhhhHHHHHHHhc-CCCHHHHHHHHHHHHH-hhcCCCc-hhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 108 DQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITV-LDSVPDI-DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~-d~~~~vR~~a~~~l~~-L~~~~~~-~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
-..+=..++....-..+ .++..||..+++++.. +.-+.+. .--..-.-|+...+..-.-++.++..+|-.|+.++..
T Consensus 171 i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~ 250 (858)
T COG5215 171 IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMM 250 (858)
T ss_pred HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHH
Confidence 00000111222222222 3678999999998864 3222111 0001122334555556666789999999888887764
Q ss_pred HhcCCCCCChHHHHHH-HHHhcCCCCHHHHHHHHH-HHHHHHh-hcCcCcccc---------------hhhHHHHHhhhc
Q 009182 185 EIKNSPSVDYGRMAEI-LVQRAASPDEFTRLTAIT-WINEFVK-LGGDQLVPY---------------YADILGAILPCI 246 (541)
Q Consensus 185 ~i~~~~~~~~~~ii~~-Ll~~~~~~~~~vr~~al~-wL~~l~~-~~~~~l~p~---------------l~~llp~ll~~l 246 (541)
-.-+-..+++++.+-. ....+++++++|+..|++ |-..+.+ +.+.--..| ...++|.+++.+
T Consensus 251 LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL 330 (858)
T COG5215 251 LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLL 330 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHH
Confidence 3211111223332222 234578899999988874 6332222 111111122 345889999988
Q ss_pred CCCCh-------hHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-ChHHHhhhh
Q 009182 247 SDKEE-------KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFL 318 (541)
Q Consensus 247 ~d~~~-------~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~-~~~~i~~~l 318 (541)
...++ ++..+|..|++-+.+..++ .-+.+++..+-+.+++++|..|+++..++|-+.++ |..-..++.
T Consensus 331 ~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V 406 (858)
T COG5215 331 EKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV 406 (858)
T ss_pred HhcCCCccccccchhhhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH
Confidence 75332 3566777777766666554 22567888889999999999999999999877766 455568899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 319 ~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
++.+|.++..++|+.--|...+.|++++|+
T Consensus 407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~ia 436 (858)
T COG5215 407 PQALPGIENEMSDSCLWVKSTTAWCFGAIA 436 (858)
T ss_pred HhhhHHHHHhcccceeehhhHHHHHHHHHH
Confidence 999999999999999999999999999998
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.26 E-value=2.9e-09 Score=127.91 Aligned_cols=352 Identities=14% Similarity=0.099 Sum_probs=246.6
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhh-HHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~-~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
+++++..++-.+.++|..++.++.++++.-.+.... .-...+|.|.+++.+++.+++..| ..+..+.+..-.......
T Consensus 406 ik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi 485 (2102)
T PLN03200 406 KKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAIT 485 (2102)
T ss_pred hhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555667999999999999887432111100 002357888899988889999888 677665431110000001
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
-...||.|.+.+.++++.+|+.++-.+++++... .+....+ ...++.|+++|.+.+.++|+.|..+|..++..-
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~--- 561 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA--- 561 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc---
Confidence 1234999999999999999999999999998743 2333333 246777888999999999999999999887431
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC-cc-c--chhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LV-P--YYADILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~-l~-p--~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
+ ...++.++....++++.++..++..++.+....... .. . -...-+|.+...+...++++++.|..+...+.
T Consensus 562 ---d-~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 562 ---D-AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred ---c-hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 234466666677788888888888887776654332 11 0 02367888888898889999988887776664
Q ss_pred HhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHH-Hhh-hhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009182 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLH-FLNDIFDTLLKALSDPSDEVVLLVLEV 343 (541)
Q Consensus 266 ~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~-i~~-~l~~l~p~Ll~~L~D~~~~V~~~~~~~ 343 (541)
..-.+.....-....+|.+...+.+.+..+|..+...|..+......+ ... .-.+.+|.|++.|++++.+++..++.+
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 211000001112467888899999999999999999999999754433 222 234589999999999999999999999
Q ss_pred HHHHhcch---hh--HHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHH
Q 009182 344 HACIAKDL---QH--FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVY 393 (541)
Q Consensus 344 L~~i~~~~---~~--f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~ 393 (541)
|+.+.++. .- -...++.|.+.++++..-.++-+...+.+||..-..+.+.
T Consensus 718 LanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~ 772 (2102)
T PLN03200 718 LANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVL 772 (2102)
T ss_pred HHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHH
Confidence 99999432 11 1356888999998887777788889999999887765543
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=6e-09 Score=110.12 Aligned_cols=392 Identities=15% Similarity=0.152 Sum_probs=259.8
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-hhhh-hHHHHHHHHHHHhhc-CCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFI-IFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~-~~~~-~~~~~i~~~L~kl~~-D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
.+..+..+...+..-+.+|..++-.+-..-+ +.+- .-...++|.+.+.+. +..+.++-.| -+|.++...-...+..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4555555555555556666666554433221 1111 111256777777664 6667777666 7776654311111111
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh--chHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHH
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSH--EIRQQADSALWEFLQE 185 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~--~lp~~L~~L~~lL~D~~~--eVR~~a~~~L~~ll~~ 185 (541)
..-..-+|.+..++++++..||.-++-++++++.-.+. +-. .=...++.|..++..+++ -+|..+ -+|..+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~t-W~LsNlcr- 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNAT-WTLSNLCR- 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHH-HHHHHHHc-
Confidence 11223389999999999999999999999988765432 111 223457778888887775 455555 77888885
Q ss_pred hcCCCCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 009182 186 IKNSPSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (541)
Q Consensus 186 i~~~~~~~---~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~ 262 (541)
++.|.+. +.+++|++...+++.|++|..-|+..+..+ +|..++.-++.
T Consensus 225 -gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL-----------------------sdg~ne~iq~v----- 275 (514)
T KOG0166|consen 225 -GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL-----------------------TDGSNEKIQMV----- 275 (514)
T ss_pred -CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------------------hcCChHHHHHH-----
Confidence 3435554 578899999999999999987777666543 33322211111
Q ss_pred HHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhh-hhHHHHHHHHHhcC-CCCHHHHHHH
Q 009182 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALS-DPSDEVVLLV 340 (541)
Q Consensus 263 ~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~-~l~~l~p~Ll~~L~-D~~~~V~~~~ 340 (541)
+. ..++|.|.+.|.+.+..++..|++.+|-+..+......- .....+|.+...|+ .+.+.++..+
T Consensus 276 -----i~--------~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA 342 (514)
T KOG0166|consen 276 -----ID--------AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA 342 (514)
T ss_pred -----HH--------ccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence 11 247788888888888888899999999888777554322 24568899999998 5667799999
Q ss_pred HHHHHHHhcch-hhHH-----HHHHHHHHhccccchhhhhhHHHHHHHhhccCChhh--------HHHHHHHHhcccCCh
Q 009182 341 LEVHACIAKDL-QHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER--------VYRELSTILEGEADL 406 (541)
Q Consensus 341 ~~~L~~i~~~~-~~f~-----~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~--------i~~~l~~il~~~~d~ 406 (541)
||+++.|..+. ++-+ .+++.|+..+++..--.+.-+...|.++|..=.++. +-+.|.+.| ...|.
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~ 421 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDV 421 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCCh
Confidence 99999999533 2322 478888888887766667778899999988877654 456777777 67888
Q ss_pred HHHHHHHHHhHHhhcCcHhHHHHH-HHHhhccCCcchhHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 009182 407 DFACTMVQALNLILLTSSELSELR-DLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEE 483 (541)
Q Consensus 407 ~f~~~~v~~L~~il~t~~el~~~R-~~L~~~~~~~~~~~lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~ 483 (541)
+.+......|.+|+...+...+.+ +.+...++.-++......|-..- | -.=|+-||.||.+|-.-
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~he--n----------~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHE--N----------EEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccc--c----------HHHHHHHHHHHHHhcCC
Confidence 889999999999998777665443 33333234445566666665544 2 03699999999998443
No 29
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.25 E-value=1.1e-09 Score=131.31 Aligned_cols=348 Identities=16% Similarity=0.138 Sum_probs=249.0
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
...+|++.+.+..++.++|..|+-++.|++.. ..++...+ ..++|.|.+++.+.+..+|+.| .+|.++++. .+
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~--~d- 562 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT--AD- 562 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--cc-
Confidence 35789999999999999999999999999853 22222222 1478889999999999999888 888877652 11
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc-hhhhc---hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLGF---LPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~-~l~~~---lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
. ..++.+.+.+..+++.++..++..++.+.+..+. +.... -+.-++.|.+++..+++++|+.|+.++..+.
T Consensus 563 -~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 563 -A----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred -h----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 2357788888889999999999999888665443 22211 2356788888999999999999999988886
Q ss_pred HHhcCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc-hh-hHHHHHhhhcCCCChhHHHHHHHH
Q 009182 184 QEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YA-DILGAILPCISDKEEKIRVVARET 260 (541)
Q Consensus 184 ~~i~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~-l~-~llp~ll~~l~d~~~~iR~~A~~~ 260 (541)
..-.... ..-....+|.++..+++.+..+|..+...|..+..-+.+.-..+ .. ..+|.+.+.+++++.++++.|..+
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 4211000 01135678889999999999999999988888876433332222 32 478999999999999999888888
Q ss_pred HHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHH-h-h--hhHHHHHHHHHhcCCCCHHH
Q 009182 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-L-H--FLNDIFDTLLKALSDPSDEV 336 (541)
Q Consensus 261 ~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i-~-~--~l~~l~p~Ll~~L~D~~~~V 336 (541)
...+.+..... ..+--...++.|.+.+++.+...|..|...+..|..+.|.+- . . .-...+..|+..|+-.+.++
T Consensus 718 LanLl~~~e~~-~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~ 796 (2102)
T PLN03200 718 LANLLSDPEVA-AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDS 796 (2102)
T ss_pred HHHHHcCchHH-HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcch
Confidence 77765322110 001113568999999999999999999999999999987432 2 2 23456788899998776665
Q ss_pred HHH--HHHHHHHHhc---chhh----HH------HHHHHHHHhccccchhhhhhHHHHHHHhhccCC
Q 009182 337 VLL--VLEVHACIAK---DLQH----FR------QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (541)
Q Consensus 337 ~~~--~~~~L~~i~~---~~~~----f~------~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~ 388 (541)
... ++++++.++. +..| |- .=+..|.+.+....+.+++++-.|+-+||.--.
T Consensus 797 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 797 SATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 554 8888888872 1111 11 124445455577788889999999999998644
No 30
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.24 E-value=1.2e-08 Score=113.51 Aligned_cols=362 Identities=15% Similarity=0.116 Sum_probs=249.6
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
-.++.+.+.+.-+|.++.||.++|.-++++++....+.. ...+.+.+..+..|...+||.+| ..+..+.+ +.....
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~--~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~-l~~~~~ 311 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIV--KSEVLPTLIQLLRDDQDSVREAAVESLVSLLD-LLDDDD 311 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHH--HhhccHHHhhhhhcchhhHHHHHHHHHHHHHH-hcCCch
Confidence 344556677788999999999999999999998765432 45778888889999999999999 87776655 322211
Q ss_pred hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 009182 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
--...+.|.+.+...|.++.+|.....+...+.+..+. ...-+...+.....++|+..++|.++..-...|......
T Consensus 312 -d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 312 -DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred -hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence 23567899999999999999999999999888877665 233445555666789999999999998888888765543
Q ss_pred CCCCC--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 009182 189 SPSVD--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (541)
Q Consensus 189 ~~~~~--~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~ 266 (541)
.+.++ .++++|.+...+.+.++.+|.....-+..+..+.|..- -++.++|..+..++|..++||.--......+..
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~--ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~ 466 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER--TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE 466 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc--CccccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence 33333 47789999999999999999887665555555544322 267888999999999999988544432222211
Q ss_pred hhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009182 267 IKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (541)
Q Consensus 267 ~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~ 346 (541)
.-...|-.+--+..+|.+.+.-.+.+|..|.+.+..+-.++.-....++ -+.+-+.+..-+.|...++|..+...+..
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~--~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF--DEKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh--hHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 1111121233456777777777777888898888877766666554432 23455566666778888888888777777
Q ss_pred Hh---cchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHHHhc
Q 009182 347 IA---KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILE 401 (541)
Q Consensus 347 i~---~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~ 401 (541)
.+ +.+=+=...++.++.+..+++-+.+..-.+-+.-+..-+|.|-..+.|..++.
T Consensus 545 l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~ 602 (759)
T KOG0211|consen 545 LVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFL 602 (759)
T ss_pred HHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHH
Confidence 66 22223345777777777665333333333444455555666655555555543
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=99.24 E-value=1.8e-07 Score=105.05 Aligned_cols=217 Identities=16% Similarity=0.177 Sum_probs=135.2
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
.++.+.+-++|+++.||..|...+..|. .+++ .+.+.+.+.+++.|+++-||+.| .++.++.+.-. +...
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i---~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~ 176 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSV---LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFY 176 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---cccc
Confidence 3577788888888888888877666542 1222 35667778888889999999888 66666544111 1111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~ 191 (541)
-..+++.|.+++.|.||.|...++..+..+....+..+ ......+..++..+.+-++=-+....+. +.. ..-..+
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~l---L~~-y~P~~~ 251 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILEL---LAA-QRPSDK 251 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHH---HHh-cCCCCc
Confidence 23568888888888999999999888888876544332 3344555666667766664444433333 322 111112
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p-~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
.+...+++.+..++++.++.|..+|+.-+-.+....+..+.+ .+.++-+.++. +..+++++|-.+.+....+
T Consensus 252 ~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~-L~ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 252 ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLT-LSRRDAETQYIVCKNIHAL 324 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHH-hhCCCccHHHHHHHHHHHH
Confidence 346789999999999999999988876555443322222211 12223343443 3456788887777655444
No 32
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.23 E-value=1.1e-09 Score=114.91 Aligned_cols=363 Identities=16% Similarity=0.166 Sum_probs=250.0
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
.+|...|+=.+-..+-|+|..+|...-|.+.|++..++-... +...--=+.+.|+-||+.. .+..-..+
T Consensus 241 ~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~------vs~mrpDi~~~deYVRnvt~ra~~vva~---- 310 (975)
T COG5181 241 VPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFS------VSSMRPDITSKDEYVRNVTGRAVGVVAD---- 310 (975)
T ss_pred ccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhcccee------eeeccCCcccccHHHHHHHHHHHHHHHH----
Confidence 466777766667788899999999999999999988762211 1111112567788899877 44433333
Q ss_pred ccchhcHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 106 ESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d~-~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
++.++.+.|.|...-++. +++.|...+.++.+++...|...++|+..+++-+-+++.|.+.-||-.++.++..+.+
T Consensus 311 ---algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae 387 (975)
T COG5181 311 ---ALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAE 387 (975)
T ss_pred ---hhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHH
Confidence 456788899998888884 8999999999999999999999999999999999999999998888887777766655
Q ss_pred HhcCCC-------------------------------------CC-----ChHHHHHHHHHhcCCCCH------------
Q 009182 185 EIKNSP-------------------------------------SV-----DYGRMAEILVQRAASPDE------------ 210 (541)
Q Consensus 185 ~i~~~~-------------------------------------~~-----~~~~ii~~Ll~~~~~~~~------------ 210 (541)
..+-.. +| +-...+.++..-.+++++
T Consensus 388 ~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~ 467 (975)
T COG5181 388 LVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERI 467 (975)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHH
Confidence 443110 00 011122222222222211
Q ss_pred ----------HHHHH------HHHHHHHHHh-------------------------------------------------
Q 009182 211 ----------FTRLT------AITWINEFVK------------------------------------------------- 225 (541)
Q Consensus 211 ----------~vr~~------al~wL~~l~~------------------------------------------------- 225 (541)
..|.. ..+|-...+.
T Consensus 468 C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsr 547 (975)
T COG5181 468 CDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSR 547 (975)
T ss_pred HhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHH
Confidence 01100 0112211110
Q ss_pred ----------------------------h-----------------cCcCcccchhhHHHHHhhhcCCCChhHHHHHHHH
Q 009182 226 ----------------------------L-----------------GGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (541)
Q Consensus 226 ----------------------------~-----------------~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~ 260 (541)
. .+....||++.|+..+++.+....|++|..|.+.
T Consensus 548 i~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl 627 (975)
T COG5181 548 IFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADL 627 (975)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 0 0123459999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC-hHHHhhhhHHHHHHHHHhcCCCCHHHHHH
Q 009182 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLL 339 (541)
Q Consensus 261 ~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~-~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~ 339 (541)
++.+...+++.++.-.+..+=.+|-+.+..+..++=-..+.++..++... -..+.|-..+++|.+.+.|......|+..
T Consensus 628 ~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~n 707 (975)
T COG5181 628 MGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVAN 707 (975)
T ss_pred HHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhh
Confidence 99998877765443333444456778888777778778888888777765 35677888999999999999999999999
Q ss_pred HHHHHHHHhcc------hhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHHHhcc
Q 009182 340 VLEVHACIAKD------LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG 402 (541)
Q Consensus 340 ~~~~L~~i~~~------~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~ 402 (541)
+..+++.|+.+ ....-.+.=+|++++..-++-.++.+.--+--+..-+||+.|..++-+=|+.
T Consensus 708 ti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkv 776 (975)
T COG5181 708 TIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKV 776 (975)
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchH
Confidence 99999999942 2234446667778777666555555555555555667776666555554443
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.19 E-value=1.8e-08 Score=109.64 Aligned_cols=328 Identities=16% Similarity=0.220 Sum_probs=223.4
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~-~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
...+.+.+..++.++++.||..|+..+.+++..-.+... ..=+++++.+..++.|+|.+|.+.| ..|.++++ .
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~----~- 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS----H- 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC----C-
Confidence 456778889999999999999999998887754322111 1115789999999999999999999 77776654 1
Q ss_pred chhcHhhh-----HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchH--HHHHHHHHHcCCCCHHHHHHHHHHHH
Q 009182 108 DQFSIEEF-----IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDGLFNMLSDSSHEIRQQADSALW 180 (541)
Q Consensus 108 ~~~~l~~~-----iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp--~~L~~L~~lL~D~~~eVR~~a~~~L~ 180 (541)
...++.+ ++.|...+...++.+|.-+.+.+..+.+..+..+ .+.- .+++.+++.+.+.+.-||..+.+.+.
T Consensus 150 -~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 150 -PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred -chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1122233 7888888887799999999998888877765433 3333 37888888999988889999999999
Q ss_pred HHHHHhcCCCCCCh--HHHHHHHHHhcCCC--CH---HHH-HHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChh
Q 009182 181 EFLQEIKNSPSVDY--GRMAEILVQRAASP--DE---FTR-LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEK 252 (541)
Q Consensus 181 ~ll~~i~~~~~~~~--~~ii~~Ll~~~~~~--~~---~vr-~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~ 252 (541)
.+.. ......++ ..+++.+...+.+. |+ .+- -..+...+.++...+..+..-+|.++..+..++...++.
T Consensus 228 ~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~ 305 (503)
T PF10508_consen 228 ELAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPT 305 (503)
T ss_pred HHHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChh
Confidence 8875 11111111 34555555544333 22 111 122345556666666666667799999999888889999
Q ss_pred HHHHHHHHHHHHHHhhcC-----CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChH----HHhhhhHHHHH
Q 009182 253 IRVVARETNEELRAIKAD-----PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT----EVLHFLNDIFD 323 (541)
Q Consensus 253 iR~~A~~~~~~L~~~i~~-----~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~----~i~~~l~~l~p 323 (541)
.+..|.++.|.+...... ....-.+..++........+...+.|..+++++..+....++ ++....+..+.
T Consensus 306 ~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~ 385 (503)
T PF10508_consen 306 IREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYE 385 (503)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 999999999877422110 011123456777777777778888999999999998765543 23222233222
Q ss_pred ---------HHHHhcCCCCHHHHHHHHHHHHHHhcch---h---hHHHHHHHHHHhcc
Q 009182 324 ---------TLLKALSDPSDEVVLLVLEVHACIAKDL---Q---HFRQLVVFLVHNFR 366 (541)
Q Consensus 324 ---------~Ll~~L~D~~~~V~~~~~~~L~~i~~~~---~---~f~~~m~~LL~~~~ 366 (541)
.++..++.|=|++|..++.+|..++..+ . ....|+.-++++-.
T Consensus 386 ~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~ 443 (503)
T PF10508_consen 386 SLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRST 443 (503)
T ss_pred HhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCC
Confidence 6778888999999999999999998421 1 12335555655544
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=99.12 E-value=5.1e-07 Score=101.55 Aligned_cols=358 Identities=14% Similarity=0.131 Sum_probs=230.1
Q ss_pred HHhhcCCCCHHH-HHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhh
Q 009182 37 VLNSFSDQDSRV-RYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE 114 (541)
Q Consensus 37 vl~~l~D~d~~V-R~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~ 114 (541)
+...|..++... |.+....++.+.. +... ..+|+.+.++++.++..+|+-. -.+.+..+ .. ....-.
T Consensus 37 Lr~~L~s~~~~~kk~alKkvIa~mt~--G~Dv----S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~----~~-pelalL 105 (746)
T PTZ00429 37 LQNDLNGTDSYRKKAAVKRIIANMTM--GRDV----SYLFVDVVKLAPSTDLELKKLVYLYVLSTAR----LQ-PEKALL 105 (746)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHC--CCCc----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc----cC-hHHHHH
Confidence 344445555544 4444444444432 2233 3567788888999999999987 44433322 11 111334
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh
Q 009182 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (541)
Q Consensus 115 ~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~ 194 (541)
.++.+..=+.|+||.+|..++..++.+ ... ..++.+.+.+.+.++|+++-||+.|.-|+..+.+.-+.. ..-
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~I---r~~---~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel--v~~ 177 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCI---RVS---SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL--FYQ 177 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcC---CcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc--ccc
Confidence 588888888999999999999877653 333 445566777888999999999999999988776432210 112
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC
Q 009182 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG 274 (541)
Q Consensus 195 ~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~ 274 (541)
..+++.+.+.+.|+++.|..+|+..+.++.+..+..+ ......+.-++..+.+-++--+ ..++..+.+... .+.
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Q---i~IL~lL~~y~P--~~~ 251 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQ---LYILELLAAQRP--SDK 251 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHH---HHHHHHHHhcCC--CCc
Confidence 4577888888899999999999999988877665432 2334444555555544332211 122333322211 122
Q ss_pred CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHH-hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-chh
Q 009182 275 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQ 352 (541)
Q Consensus 275 ~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i-~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-~~~ 352 (541)
.+...++..+...+++.+..+-.+|.+.+..+...++.++ ......+-+.++.. ..++++++..+++.+..+.. .+.
T Consensus 252 ~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~ 330 (746)
T PTZ00429 252 ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPN 330 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHH
Confidence 3456789999999999999999999999988876653333 22333444555554 45678999999998888873 455
Q ss_pred hHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcC
Q 009182 353 HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLT 422 (541)
Q Consensus 353 ~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t 422 (541)
.|.+-+..+...+.+ ......+.-.|+-.||..-|.+.|.+.|.+-.. +.|.+|+...|+.+..+-+.
T Consensus 331 lf~~~~~~Ff~~~~D-p~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~-d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 331 LLRTNLDSFYVRYSD-PPFVKLEKLRLLLKLVTPSVAPEILKELAEYAS-GVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHHhhhcccCC-cHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHh
Confidence 666654444444444 334566666688888888888888877777554 34666766666666655443
No 35
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.11 E-value=4.9e-07 Score=94.84 Aligned_cols=337 Identities=17% Similarity=0.132 Sum_probs=223.3
Q ss_pred hhhhcchh-HHHHhhcCCCCHHHHHHHHHHHHHHHHHh-chhh----------------hhHHHHHHHHHHHhhc----C
Q 009182 27 ETILQQIV-PPVLNSFSDQDSRVRYYACEALYNIAKVV-RGDF----------------IIFFNQIFDALCKLSA----D 84 (541)
Q Consensus 27 ~~~l~~ii-~~vl~~l~D~d~~VR~~A~eaL~~i~k~~-~~~~----------------~~~~~~i~~~L~kl~~----D 84 (541)
..|++.-+ .-..+.+..++.+|-..|.|--..|...- .++. .....+++|.|.+++. |
T Consensus 257 ~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed 336 (858)
T COG5215 257 QSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGED 336 (858)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCC
Confidence 35555555 33456778888888877766443333211 1111 1123468888888763 2
Q ss_pred CCH---HHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHH
Q 009182 85 SDA---NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDG 159 (541)
Q Consensus 85 ~d~---~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~ 159 (541)
++. ++-.+| ..|.-+.+ . .++.-++.+...+.+-++.+++.-|..++-+++.+-.-|..+ +.++.|..+|+
T Consensus 337 ~~~DdWn~smaA~sCLqlfaq-~---~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~ 412 (858)
T COG5215 337 YYGDDWNPSMAASSCLQLFAQ-L---KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPG 412 (858)
T ss_pred ccccccchhhhHHHHHHHHHH-H---hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHH
Confidence 222 455555 33321111 1 133445556777788889999999999999999888777665 66899999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhh----c---Cc
Q 009182 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNSPS--VDYGRMAEILVQRAASPDEFTRLTAITWIN-EFVKL----G---GD 229 (541)
Q Consensus 160 L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~--~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~-~l~~~----~---~~ 229 (541)
+.++++|+.--|+..+.-|++.+...+....+ .|+...+...+....| .+.+.. .+.|-. .++.. . +.
T Consensus 413 i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~-ncsw~~~nlv~h~a~a~~~~~S 490 (858)
T COG5215 413 IENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSI-NCSWRKENLVDHIAKAVREVES 490 (858)
T ss_pred HHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHh-hhHHHHHhHHHhhhhhhccccc
Confidence 99999999999998888888888766654333 3667777777766654 344333 344432 33332 2 45
Q ss_pred CcccchhhHHHHHhhhc--CCCChhHHHHHHHHHHHHHHhhcCC-----------------------C------C-----
Q 009182 230 QLVPYYADILGAILPCI--SDKEEKIRVVARETNEELRAIKADP-----------------------A------D----- 273 (541)
Q Consensus 230 ~l~p~l~~llp~ll~~l--~d~~~~iR~~A~~~~~~L~~~i~~~-----------------------~------~----- 273 (541)
-+.+|.+.|+..+++.- .+.+.+.|..+.++++++.....+. + +
T Consensus 491 ~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~ 570 (858)
T COG5215 491 FLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVE 570 (858)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 57788899998888743 3567788888888888765322110 0 0
Q ss_pred -----------------CCC---h-HhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC
Q 009182 274 -----------------GFD---V-GPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (541)
Q Consensus 274 -----------------~~~---l-~~il~~L~~~L~~~-~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D 331 (541)
.-+ . +++++.+.+.+.+. ....-..++..++++.....+++..|.+.++|++.+.|+-
T Consensus 571 elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~ 650 (858)
T COG5215 571 ELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC 650 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc
Confidence 011 1 23555555555443 2234556777888888888889999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHhc-----chhhHHHHHHHHHHhccccc
Q 009182 332 PSDEVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVDN 369 (541)
Q Consensus 332 ~~~~V~~~~~~~L~~i~~-----~~~~f~~~m~~LL~~~~~~~ 369 (541)
.+.-|-..+..+.+.++. ...|=+.+|..|.+++++..
T Consensus 651 ~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~ 693 (858)
T COG5215 651 TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEA 693 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChh
Confidence 777788889999999982 23566789999999998663
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.10 E-value=3.2e-10 Score=94.98 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=83.2
Q ss_pred HHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCC
Q 009182 88 NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD 166 (541)
Q Consensus 88 ~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D 166 (541)
+.|+|+ .+|......+... ....++.++|++..++.|+++.||+++++++.++.++.+.++++|+++++++|++...|
T Consensus 1 n~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred CchhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 357888 7787776655544 34568999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 009182 167 SSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 167 ~~~eVR~~a~~~L~~ll~ 184 (541)
+++.||.+| +.|+.+++
T Consensus 80 ~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CchhHHHHH-HHHHHHhc
Confidence 999999999 77887764
No 37
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.07 E-value=2.9e-09 Score=103.91 Aligned_cols=192 Identities=21% Similarity=0.246 Sum_probs=134.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc--h--hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD--Q--FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI 147 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~--~--~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~ 147 (541)
++.+.+.+--.+.+-+.|..| ..|.++++.-..+.. . ..+..+++.+...+.|.+..|-..++..+..+....+.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 344444454577788888888 777777775522111 1 12334456777788888899999999999999999998
Q ss_pred hhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRM-AEILVQRAASPDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 148 ~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~i-i~~Ll~~~~~~~~~vr~~al~wL~~l~~~ 226 (541)
.+-++++.+++.|++.++|++..+|+.|..++..+++.+. ....+ .+.+....++.++.+|..++.|+..+...
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999885432 13455 78888889999999999999999998877
Q ss_pred cC---cCccc--chhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc
Q 009182 227 GG---DQLVP--YYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (541)
Q Consensus 227 ~~---~~l~p--~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~ 269 (541)
.+ ..+.. +++.+.+.+.+++.|+++++|+.|.++...+.+.++
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 66 33332 358999999999999999999999999988876654
No 38
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.05 E-value=2.6e-07 Score=97.54 Aligned_cols=313 Identities=15% Similarity=0.128 Sum_probs=222.4
Q ss_pred HHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch----h-----------------------
Q 009182 14 EQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----D----------------------- 66 (541)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~----~----------------------- 66 (541)
+.+..+|+.... ..++..++.++.|+..--|..++.+...+....+- +
T Consensus 508 ~ttvilAk~~g~-----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~ 582 (975)
T COG5181 508 LTTVILAKMGGD-----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGL 582 (975)
T ss_pred hhHHHHHHHcCC-----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccE
Confidence 334555555555 45677889999999988888888776554433210 0
Q ss_pred ---------------hhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch-hcHhhhHHHHHHHhcCCCHH
Q 009182 67 ---------------FIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ-FSIEEFIPLLRERMNVLNPY 129 (541)
Q Consensus 67 ---------------~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~-~~l~~~iP~L~e~l~d~~~~ 129 (541)
.-+|...++....+.+.++.++||..| ..+..+.+ ++..+++ .-+.++=-.|.|.+....|+
T Consensus 583 il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~-vlk~c~e~~~l~klg~iLyE~lge~ypE 661 (975)
T COG5181 583 ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAK-VLKACGETKELAKLGNILYENLGEDYPE 661 (975)
T ss_pred EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHhcchHHHHHHHhHHHHHhcCcccHH
Confidence 015556778888899999999999998 66555544 4443332 34566667788889889999
Q ss_pred HHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChH---HHHHHHHHhc
Q 009182 130 VRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG---RMAEILVQRA 205 (541)
Q Consensus 130 vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~---~ii~~Ll~~~ 205 (541)
|--+++.+|..+.++.+-+ +.+=+..++|.|.-.|......|.......++.++..-.. ..... .|-=-++..+
T Consensus 662 vLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe--yi~~rEWMRIcfeLvd~L 739 (975)
T COG5181 662 VLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE--YIGVREWMRICFELVDSL 739 (975)
T ss_pred HHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHH
Confidence 9999999999998877643 4444445555555588877777777776666665532111 11122 3333456666
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHH-HhhcCCCCCCChHhHHHHH
Q 009182 206 ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR-AIKADPADGFDVGPILSIA 284 (541)
Q Consensus 206 ~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~-~~i~~~~~~~~l~~il~~L 284 (541)
.+-+-++|.+|-..++.+.+.-|+ ..++..+++.+.-++..-| ++..+. ..+.+. --.=.++|++
T Consensus 740 ks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~R-----vctsvaI~iVae~---cgpfsVlP~l 805 (975)
T COG5181 740 KSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQR-----VCTSVAISIVAEY---CGPFSVLPTL 805 (975)
T ss_pred HHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhh-----hhhhhhhhhhHhh---cCchhhHHHH
Confidence 777889999999888877775443 4678889988876555443 222221 111111 0113689999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 285 TRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 285 ~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
......++..+.-.+|+++..+.+..++.-..|...+.|.+-..|.|.++.-|+.+..++..++
T Consensus 806 m~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 806 MSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888999999999999999999999999999999998
No 39
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.02 E-value=8.9e-09 Score=100.52 Aligned_cols=155 Identities=23% Similarity=0.425 Sum_probs=114.8
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
.++..+++.+..++.|..+.|-..||..+..++...+..+.++.+.++|.|.+.++|+...+|++| .+|..+++...
T Consensus 49 ~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-- 126 (228)
T PF12348_consen 49 ECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-- 126 (228)
T ss_dssp HHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--
Confidence 345556688999999999999999999999999999988889999999999999999999999999 77777665221
Q ss_pred cchhcHhhh-HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC---chhhh--chHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 009182 107 SDQFSIEEF-IPLLRERMNVLNPYVRQFLVGWITVLDSVPD---IDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (541)
Q Consensus 107 ~~~~~l~~~-iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~---~~l~~--~lp~~L~~L~~lL~D~~~eVR~~a~~~L~ 180 (541)
....+ .+.+.....+.||.+|..++.|+..+....+ ..+.. .++.+.+.+.+.+.|++++||+.|..++.
T Consensus 127 ----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 127 ----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp ----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 12344 8888899999999999999999998876655 33332 46889999999999999999999999999
Q ss_pred HHHHHhcC
Q 009182 181 EFLQEIKN 188 (541)
Q Consensus 181 ~ll~~i~~ 188 (541)
.+-+.++.
T Consensus 203 ~l~~~~~~ 210 (228)
T PF12348_consen 203 ALYSHFPE 210 (228)
T ss_dssp HHHHHH-H
T ss_pred HHHHHCCH
Confidence 99877763
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.00 E-value=7e-07 Score=97.36 Aligned_cols=259 Identities=14% Similarity=0.185 Sum_probs=182.1
Q ss_pred HHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh-hchHH
Q 009182 78 LCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML-GFLPD 155 (541)
Q Consensus 78 L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~-~~lp~ 155 (541)
++..+++.+.+.-..+ ..|++++++... ....+.+.|.|...++++++.||..++..++.+....+.... ..=++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~---~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP---DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 5555555554444444 667777764422 233788899999999999999999999999988766543211 12256
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRM-----AEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 156 ~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~i-----i~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
+++.+..++.|++.+|.+.|.++|..+.+. ....+.+ ++.+...+..+++.+|.-++..+.++++..++.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-----~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH-----PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-----chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 788888999999999999999998888742 1233444 777777777778888888777777776665543
Q ss_pred cccchh--hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCh---HhHHHHHHHhcCCCCHH-----HHH-HH
Q 009182 231 LVPYYA--DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEA-----TRI-EA 299 (541)
Q Consensus 231 l~p~l~--~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l---~~il~~L~~~L~~~~~~-----~R~-aa 299 (541)
+ .+.- .+++.++..+.+++.-+|..|.+....+.. . ..+..+ ..+++.+...+.+.... ... ..
T Consensus 195 ~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~---~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 195 A-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE---T-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred H-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc---C-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 3 3333 489999999988777778777777777643 1 111221 35777777776432221 222 22
Q ss_pred HHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 300 LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 300 l~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
+...+.++...|..+....+.++..+...+...++..+..|+++++.|++
T Consensus 270 ~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 270 MKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 36777788888888887778888888888888889999999999999994
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=9e-09 Score=108.79 Aligned_cols=351 Identities=19% Similarity=0.163 Sum_probs=229.4
Q ss_pred chhHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhchh---hhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHH------H
Q 009182 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGD---FIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL------V 100 (541)
Q Consensus 32 ~ii~~vl~~l~-D~d~~VR~~A~eaL~~i~k~~~~~---~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l------~ 100 (541)
.++|.+..++. |.++.+|+.|+-+|.||+...... +.. ....|.+.+++.+|+.+|++-| -+|.++ |
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc--CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 57788888995 888999999999999999654221 111 2457788999999999999999 888765 4
Q ss_pred hHhhcccchhcHhhhHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCC-CchhhhchHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009182 101 KDIVTESDQFSIEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (541)
Q Consensus 101 kdi~~e~~~~~l~~~iP~L~e~l~d~~~-~vR~~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~ 178 (541)
.|.+-+.+. ++.|...+...++ .....+.-.+++++... +..-...+-.+++.|..++..++++|..-|+-+
T Consensus 187 Rd~vl~~g~------l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WA 260 (514)
T KOG0166|consen 187 RDYVLSCGA------LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWA 260 (514)
T ss_pred HHHHHhhcc------hHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 455544443 7777777776655 45556666777887654 333446677889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc---cchhhHHHHHhhhcCCC-ChhH
Q 009182 179 LWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV---PYYADILGAILPCISDK-EEKI 253 (541)
Q Consensus 179 L~~ll~~i~~~~~~~~-~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~---p~l~~llp~ll~~l~d~-~~~i 253 (541)
+..+...-......-+ ..++|.+++.+.+++..++.-|+..++.++. |.+.. ---...+|.+...+..+ ...|
T Consensus 261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~i 338 (514)
T KOG0166|consen 261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINSGALPVLSNLLSSSPKESI 338 (514)
T ss_pred HHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhcChHHHHHHHhccCcchhH
Confidence 9988642110000011 4678899999999998898888888887533 22110 01246678888888754 4448
Q ss_pred HHHHHHHHHHHHHhhcCCCC---CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHh
Q 009182 254 RVVARETNEELRAIKADPAD---GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKA 328 (541)
Q Consensus 254 R~~A~~~~~~L~~~i~~~~~---~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~--~l~p~Ll~~ 328 (541)
|+.|.-+...+.. .+.. ++--..++|.|...+.+.++.+|..|.-+++.+..++..+...|+- .+++.+...
T Consensus 339 kkEAcW~iSNItA---G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdl 415 (514)
T KOG0166|consen 339 KKEACWTISNITA---GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDL 415 (514)
T ss_pred HHHHHHHHHHhhc---CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhc
Confidence 8766555443321 0000 0001368899999999989999999999998887777655444432 367777777
Q ss_pred cCCCCHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHHHhcc
Q 009182 329 LSDPSDEVVLLVLEVHACIAKDLQHFRQLV-VFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG 402 (541)
Q Consensus 329 L~D~~~~V~~~~~~~L~~i~~~~~~f~~~m-~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~ 402 (541)
|.=++..+...++..+..|-+..+.+...= ..+-.++. +.-|-.=|..|+..-| |.||..--+|+..
T Consensus 416 L~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IE------e~ggldkiE~LQ~hen-~~Iy~~A~~II~~ 483 (514)
T KOG0166|consen 416 LTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIE------EAGGLDKIENLQSHEN-EEIYKKAYKIIDT 483 (514)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH------HccChhHHHHhhcccc-HHHHHHHHHHHHH
Confidence 766666677778888777763111111000 11111111 1222334556655555 6777777777655
No 42
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.2e-07 Score=94.67 Aligned_cols=328 Identities=17% Similarity=0.162 Sum_probs=203.1
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch-h-h------hhHHHH----------------------------
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-D-F------IIFFNQ---------------------------- 73 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~-~-~------~~~~~~---------------------------- 73 (541)
-.+...||+..++.+++.+..+||++++|++-.... . + .+-+.+
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhh
Confidence 445678999999999999999999999987743321 0 0 000000
Q ss_pred -----HHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc-hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc--C
Q 009182 74 -----IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS--V 144 (541)
Q Consensus 74 -----i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~-~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~--~ 144 (541)
-+..+.++....|-.||.-| .+|.+..- ..|+. .-.-.--+|.|.+.+...|+.+|+++..+|+.+.- .
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmTh--s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTH--SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR 240 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhh--hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH
Confidence 12233344444455555444 43332210 00100 00011228999999999999999999999998753 2
Q ss_pred CCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009182 145 PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFV 224 (541)
Q Consensus 145 ~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~ 224 (541)
...-+..-=|.+.+.|..++.|+++.|+-.|..+|+.+...-.-....--..=+|.+++.++++---.-.+.+.-|..+.
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis 320 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS 320 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc
Confidence 33446667788899999999999999999988888877532210000001223466666666653222223334444443
Q ss_pred hhcCcCcccchhhHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC--HHHHHHHHH
Q 009182 225 KLGGDQLVPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALH 301 (541)
Q Consensus 225 ~~~~~~l~p~l~~llp~ll~~l~d~-~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~--~~~R~aal~ 301 (541)
-..+....--=..++.-+...+... +.+++-.|..++..+...-..+...+--..-+|.+.+.+.+.. +..++++..
T Consensus 321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 2222221111123344455566664 4557777777766664321111101111245678888886654 446788888
Q ss_pred HHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 009182 302 WISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFL 361 (541)
Q Consensus 302 wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~L 361 (541)
....+.+.....+.+ ..++|.|++...|.+.+|+-.+..+|..++++.+++.+|++..
T Consensus 401 a~Lal~d~~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEaw 458 (550)
T KOG4224|consen 401 AQLALNDNDKEALLD--SGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAW 458 (550)
T ss_pred HHHHhccccHHHHhh--cCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHh
Confidence 888888888777754 4789999999999999999999999999999888888887665
No 43
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.85 E-value=8.8e-06 Score=86.81 Aligned_cols=330 Identities=20% Similarity=0.253 Sum_probs=204.4
Q ss_pred hhhhcchhHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHhchh-----hhhHHHH-HHHHHHHhhcCC---CHHHHHH
Q 009182 27 ETILQQIVPPVLNSFS-----DQDSRVRYYACEALYNIAKVVRGD-----FIIFFNQ-IFDALCKLSADS---DANVQSA 92 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~-----D~d~~VR~~A~eaL~~i~k~~~~~-----~~~~~~~-i~~~L~kl~~D~---d~~VR~~ 92 (541)
...++.+++.++.-+. ..+...-..++.+++.+.+..... ...|+++ ++|.+.+...+. +.+....
T Consensus 33 ~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~ 112 (415)
T PF12460_consen 33 PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDR 112 (415)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchH
Confidence 4555666666655443 235666677788888887665322 2344454 777777644211 1111111
Q ss_pred H-HHHHHHHhHhhcccc----hhcHhhhHHHHH-----HHhc-CCC---HHHHHHHHHHHHHhhcCCCchhhhchHHHHH
Q 009182 93 A-HLLDRLVKDIVTESD----QFSIEEFIPLLR-----ERMN-VLN---PYVRQFLVGWITVLDSVPDIDMLGFLPDFLD 158 (541)
Q Consensus 93 A-~~L~~l~kdi~~e~~----~~~l~~~iP~L~-----e~l~-d~~---~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~ 158 (541)
. ..+.+++.-++...+ ...++.+...+. ..+. ..+ ..-+..++-.-+.+++.++.--.+...++++
T Consensus 113 ~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~ 192 (415)
T PF12460_consen 113 VLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQ 192 (415)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHH
Confidence 2 334455554443221 122333343333 0111 111 1223333334456666666544457777888
Q ss_pred HHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhc-CCCCHHH---HHHHHHHHHHHHhhcCcCccc
Q 009182 159 GLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-ASPDEFT---RLTAITWINEFVKLGGDQLVP 233 (541)
Q Consensus 159 ~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~-~~~~~~v---r~~al~wL~~l~~~~~~~l~p 233 (541)
.+.++.... ++.+|..+.+++..++..... +..+++++..+.... ...+... ......|+..-.-+-+. |
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~---~ 267 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWPD--DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH---P 267 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC---c
Confidence 888887554 588999999999988865432 225677777777666 3333333 34456788753333232 3
Q ss_pred chhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh---cCCCCC---------CChHhHHHHHHHhcCCCCHHHHHHHHH
Q 009182 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIK---ADPADG---------FDVGPILSIATRQLSSEWEATRIEALH 301 (541)
Q Consensus 234 ~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i---~~~~~~---------~~l~~il~~L~~~L~~~~~~~R~aal~ 301 (541)
...+++..++..+++ +++...|.+..+-++.-. .+.... .-|..++|.+.+.++..+...|...+.
T Consensus 268 ~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 268 LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 456777777777777 666666666666554221 111111 125789999999998777779999999
Q ss_pred HHHHHHhhChHHH-hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-----hhhHHHHHHHHHH
Q 009182 302 WISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----LQHFRQLVVFLVH 363 (541)
Q Consensus 302 wL~~L~~~~~~~i-~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~-----~~~f~~~m~~LL~ 363 (541)
++..+.++.|..+ .+++++++|.++++|+-++++++..+++++..+..+ .+|.+.+++.|++
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999886 689999999999999999999999999999998832 3466677777765
No 44
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.81 E-value=6.9e-07 Score=94.18 Aligned_cols=241 Identities=15% Similarity=0.001 Sum_probs=168.4
Q ss_pred chhHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 32 QIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 32 ~ii~~vl~~l-~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
..++.++..+ .|++..||..|+.++.... - ...++.|++.+.|++++||.++ .+|..+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~------~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE------D----ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC------C----hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC---------
Confidence 3467788888 6888999887766554221 1 2348889999999999999998 7764421
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
.+...+.|...+.+.+|.+|..++..++....- -.+.+...++|+++.||..|..+++.+-.
T Consensus 115 --~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 115 --GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRAAALRALGELPR----- 176 (410)
T ss_pred --chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence 223377788888999999999999888763211 13456668899999999999999887642
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc
Q 009182 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~ 269 (541)
...+|.|.....+.++.||..|+..+..+ +. +.-++.+.....+.....+..+..... ..+
T Consensus 177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~l---G~-------~~A~~~l~~~~~~~g~~~~~~l~~~la----l~~ 237 (410)
T TIGR02270 177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLA---GS-------RLAWGVCRRFQVLEGGPHRQRLLVLLA----VAG 237 (410)
T ss_pred -----ccchHHHHHHHcCCCHHHHHHHHHHHHHc---CC-------HhHHHHHHHHHhccCccHHHHHHHHHH----hCC
Confidence 23455566778999999999999877543 21 334445555344444333333222221 111
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 270 ~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
-+..++.|...++++. +|.+++..++.+.. +..+|.|+..++|+. ++..+-+++++|.+
T Consensus 238 -------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 238 -------GPDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred -------chhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 1367788888887754 89999998886654 456788899998876 88999999999994
No 45
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.78 E-value=2.4e-06 Score=88.34 Aligned_cols=248 Identities=22% Similarity=0.181 Sum_probs=185.8
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchh
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~ 110 (541)
...+.++..+.|+++.||..|+..+..+.. .+.++.+.+.+.|.++.||..| .+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~----~------ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGEL----G------ 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----C------
Confidence 456888999999999999999988766542 4779999999999999999999 654332 1
Q ss_pred cHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCC------------HHHHHHHHH
Q 009182 111 SIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS------------HEIRQQADS 177 (541)
Q Consensus 111 ~l~~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~------------~eVR~~a~~ 177 (541)
-+.-+|.+.+.+. |+|..||..+...++.+..... +..++..+.|.. ..+|..+..
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 1233777777777 7999999999999987765433 445666777755 257777766
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHH
Q 009182 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVA 257 (541)
Q Consensus 178 ~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A 257 (541)
.++.+- -+..++.+.....+.+..+|..+...++.+.... ..+.+.+.+.+++.+..+|..+
T Consensus 172 ~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 665543 3456778888888889999999888776543311 5677889999999999999877
Q ss_pred HHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHH
Q 009182 258 RETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (541)
Q Consensus 258 ~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~ 337 (541)
....+.. +.+.-.+.+...+.++++..+..+..|.+ .-....-.+.+...+.|....++
T Consensus 234 ~~~l~~~-----------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~ 292 (335)
T COG1413 234 LLALGEI-----------GDEEAVDALAKALEDEDVILALLAAAALG----------ALDLAEAALPLLLLLIDEANAVR 292 (335)
T ss_pred HHHhccc-----------CcchhHHHHHHHHhccchHHHHHHHHHhc----------ccCchhhHHHHHHHhhcchhhHH
Confidence 7665432 35677888889998888888887777766 11223445566788889999999
Q ss_pred HHHHHHHHHHhc
Q 009182 338 LLVLEVHACIAK 349 (541)
Q Consensus 338 ~~~~~~L~~i~~ 349 (541)
..+...+..+..
T Consensus 293 ~~~~~~l~~~~~ 304 (335)
T COG1413 293 LEAALALGQIGQ 304 (335)
T ss_pred HHHHHHHHhhcc
Confidence 999888888874
No 46
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.77 E-value=3.6e-06 Score=103.15 Aligned_cols=451 Identities=18% Similarity=0.211 Sum_probs=284.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHH---hc---hhhhhHHHHHHHHHHHh-hcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKV---VR---GDFIIFFNQIFDALCKL-SADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~---~~---~~~~~~~~~i~~~L~kl-~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
..+.......+.++|..|+...-.+.+. ++ +..+.++..++..++.+ ++|+++.+|... ..++.-.....
T Consensus 484 ~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~l-- 561 (2341)
T KOG0891|consen 484 QCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQL-- 561 (2341)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhh--
Confidence 3356667777899999995443322211 11 12234566777777764 699999999877 55541111111
Q ss_pred cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHH--HHH--HHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHE--IRQ--QADSALWEF 182 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~e--VR~--~a~~~L~~l 182 (541)
.-+..+..++..+++++-.++..+...++++....+. ..+|.+.......+++-..+ .|. .+..-+..+
T Consensus 562 ----aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a---~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~ 634 (2341)
T KOG0891|consen 562 ----AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPA---YVLPSLRKTLLELLTELEFSGMARTKEESAKLLCEL 634 (2341)
T ss_pred ----cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHH---HHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHH
Confidence 1233366788899999999999999999999988775 66777777777777765322 233 232333333
Q ss_pred HHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC-CChhHHHHHHHHH
Q 009182 183 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KEEKIRVVARETN 261 (541)
Q Consensus 183 l~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d-~~~~iR~~A~~~~ 261 (541)
+........+++++++..++...++++..+..++.+.+++++.++|..+..+...+++.+.+.+.| +....|.++.+++
T Consensus 635 i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l 714 (2341)
T KOG0891|consen 635 IISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKAL 714 (2341)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHh
Confidence 322222223567888888999999999999999999999999999999988889999999999998 4567788888888
Q ss_pred HHHHHhhcC-CCCCCChHhHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhChHH--------------------------
Q 009182 262 EELRAIKAD-PADGFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTE-------------------------- 313 (541)
Q Consensus 262 ~~L~~~i~~-~~~~~~l~~il~~L~~~L~~~~-~~~R~aal~wL~~L~~~~~~~-------------------------- 313 (541)
+.+..--+- .....+++.+++.+...+..+. -..|.++++.++.+....|..
T Consensus 715 ~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 794 (2341)
T KOG0891|consen 715 GQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTSASKISSEQIKSDIDISLL 794 (2341)
T ss_pred hhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhhhHhhhhccccccchHHHH
Confidence 877432110 0123467888888888876543 346777877777555444311
Q ss_pred ---HhhhhHHHHH-----HHHHhcCCCCHHHHH-HHHHHHHHHh-----cchhhHHHHHHHHHHhccccchhhhhhHHHH
Q 009182 314 ---VLHFLNDIFD-----TLLKALSDPSDEVVL-LVLEVHACIA-----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALI 379 (541)
Q Consensus 314 ---i~~~l~~l~p-----~Ll~~L~D~~~~V~~-~~~~~L~~i~-----~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~i 379 (541)
..+-.+..+| .+...+.|++....+ ...++...|. ++..+.+.+++.++...+.... +-..++
T Consensus 795 ~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~---~~~~f~ 871 (2341)
T KOG0891|consen 795 ESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPP---NLREFY 871 (2341)
T ss_pred HhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCc---chhHHH
Confidence 0111122333 455666677655555 4445555555 3577888999999987775543 333567
Q ss_pred HHHhhccCCh--hhHHHHHHHHhcccCCh--HHHHHHHHHhHHhhcCcHhH-HHHHHHHhhccCCcchhHHHHHHHHhhc
Q 009182 380 IRRLCVLLDA--ERVYRELSTILEGEADL--DFACTMVQALNLILLTSSEL-SELRDLLKKSLVNPAGKDLFVSLYASWC 454 (541)
Q Consensus 380 ir~Lc~~l~~--e~i~~~l~~il~~~~d~--~f~~~~v~~L~~il~t~~el-~~~R~~L~~~~~~~~~~~lf~~l~~~w~ 454 (541)
+.++|...-. .++......+.....+. .-.+...+..+.+.-...++ .+|.+++.+ ....+.+-+...
T Consensus 872 ~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~------~~~~~l~~~~~~- 944 (2341)
T KOG0891|consen 872 FQQLTSLVAIVRQHIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPE------LLPTMLTVLQHD- 944 (2341)
T ss_pred HHhhhhhhhccchhHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhh------hccchheeeccc-
Confidence 7777777654 45555555554443332 33444444444455455566 677777765 222222222222
Q ss_pred cChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHH--HHHHHHHhhhhhh-hHhhhhhcCC
Q 009182 455 HSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ--LDKLIRLLETPIF-AYLRLQVLKL 515 (541)
Q Consensus 455 ~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~~~l~~--id~lvql~esp~f-~~lRl~ll~~ 515 (541)
+ +-.-.....+.+.+-.++-+.+.+.| .+-.||+++++.+ ...|...+.+
T Consensus 945 -~----------s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t 997 (2341)
T KOG0891|consen 945 -K----------SKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALIT 997 (2341)
T ss_pred -c----------cchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHH
Confidence 2 01234456667777777777766666 8999999999966 3445555544
No 47
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.7e-05 Score=85.04 Aligned_cols=463 Identities=16% Similarity=0.153 Sum_probs=264.2
Q ss_pred chhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCC-HHHHHHH-HHHHHHHhH
Q 009182 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD-ANVQSAA-HLLDRLVKD 102 (541)
Q Consensus 25 ~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d-~~VR~~A-~~L~~l~kd 102 (541)
+...+++.++..++.+++|.|..||..||..++.+.+....+.. .+++...+.+.+-.+ .+.-.|| -+|..+...
T Consensus 334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La---d~vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA---DQVIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH---HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 34578889999999999999999999999999988765543322 344555444443222 3455566 666555331
Q ss_pred -hhcccchhcHhhhHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcCC-CchhhhchHHHHHHHH-HHcCCCCHHH
Q 009182 103 -IVTESDQFSIEEFIPLLRERMN--------VLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLF-NMLSDSSHEI 171 (541)
Q Consensus 103 -i~~e~~~~~l~~~iP~L~e~l~--------d~~~~vR~~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~-~lL~D~~~eV 171 (541)
+.- ...++.++|.+...+. ....+||-.++-.+-.+.... +.++-+++..+...|. ..+-|+.-.+
T Consensus 411 GlLl---ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 411 GLLL---PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred CCcc---hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 111 1236677888887764 234689999999888887654 4567788887777766 6778999999
Q ss_pred HHHHHHHHHHHHHHhcCCCC-------------------------------CChHHHHHHHHHh-cCCCCHHHHHHHHHH
Q 009182 172 RQQADSALWEFLQEIKNSPS-------------------------------VDYGRMAEILVQR-AASPDEFTRLTAITW 219 (541)
Q Consensus 172 R~~a~~~L~~ll~~i~~~~~-------------------------------~~~~~ii~~Ll~~-~~~~~~~vr~~al~w 219 (541)
|++|..++.+.+--.++.|+ .+.+.+++.++.. ..+=|..+|..+-..
T Consensus 488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 99998887776643333220 1234555555544 455577788887777
Q ss_pred HHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCC--------CCC-ChHhHHHHH-HHhcC
Q 009182 220 INEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA--------DGF-DVGPILSIA-TRQLS 289 (541)
Q Consensus 220 L~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~--------~~~-~l~~il~~L-~~~L~ 289 (541)
+..+....++.+. ...+|-++++.-..+.+-|....-+.+++......-+ ..+ .+.++++-+ ...+.
T Consensus 568 L~~Ls~~~pk~~a---~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~ 644 (1133)
T KOG1943|consen 568 LHKLSLTEPKYLA---DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFY 644 (1133)
T ss_pred HHHHHHhhHHhhc---ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhc
Confidence 7777666555443 1334444444444566666655544444321111000 000 122333333 33332
Q ss_pred C-CCHHHHHHHHHHHHHHHhhChHHHhh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc----chhhHH-HHHHHHH
Q 009182 290 S-EWEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQHFR-QLVVFLV 362 (541)
Q Consensus 290 ~-~~~~~R~aal~wL~~L~~~~~~~i~~-~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~----~~~~f~-~~m~~LL 362 (541)
. .+...|.+.+..+..+....+.-... ..+..--.+.+++.+++ .+|..+.+.++++++ .+.++. +++...+
T Consensus 645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~l 723 (1133)
T KOG1943|consen 645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYL 723 (1133)
T ss_pred cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHH
Confidence 2 23446778777777766665532211 12334445556666666 788888898888872 344444 4888888
Q ss_pred HhccccchhhhhhHHHHHHHhhccCCh--------hhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcH------hHHH
Q 009182 363 HNFRVDNSLLEKRGALIIRRLCVLLDA--------ERVYRELSTILEGEADLDFACTMVQALNLILLTSS------ELSE 428 (541)
Q Consensus 363 ~~~~~~~~ll~~r~~~iir~Lc~~l~~--------e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~------el~~ 428 (541)
....++..--+.||-.++ |..++. |++++.+-+.........-=+.-|-.|+.+-.|.. -..+
T Consensus 724 s~~~~~~~~~~r~g~~la---l~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k 800 (1133)
T KOG1943|consen 724 SRLTKCSEERIRRGLILA---LGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEK 800 (1133)
T ss_pred HHhcCchHHHHHHHHHHH---HccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 888776543334443332 455554 34444444433332122222334445555554444 2277
Q ss_pred HHHHHhhccCC-----cc---------h-hHHHHHHHHhh------ccChHHHHHHHHHHh-------hhHHHHHHHHHh
Q 009182 429 LRDLLKKSLVN-----PA---------G-KDLFVSLYASW------CHSPMAIISLCLLAQ-------TYHHASAVIQSL 480 (541)
Q Consensus 429 ~R~~L~~~~~~-----~~---------~-~~lf~~l~~~w------~~n~~~~~slcll~~-------~y~~a~~ll~~~ 480 (541)
+|+.|-+++++ .. . ..++..++..= ||-- --.==|++.| -|++|+..+..+
T Consensus 801 ~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i-~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 801 FRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSI-NRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred HHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 88888766521 11 1 22222222211 1111 1111134544 578888888887
Q ss_pred hccccchHHHHHHHHHHHHhh
Q 009182 481 VEEDLNVKFLVQLDKLIRLLE 501 (541)
Q Consensus 481 ~~~~~~~~~l~~id~lvql~e 501 (541)
--.++++...=++++|-..+-
T Consensus 880 ~~~~~~i~~~~~~~~L~ei~~ 900 (1133)
T KOG1943|consen 880 VVHSPSIPHFRHIEKLEEIFP 900 (1133)
T ss_pred eecCCCCCcchHHHHHHhhcC
Confidence 777777766666777666554
No 48
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.70 E-value=5.6e-06 Score=93.54 Aligned_cols=280 Identities=21% Similarity=0.185 Sum_probs=178.8
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch----hhhhHHHHHHHHHHHhhcC-CCHHHHHHH-HHHHHHH
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLV 100 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~----~~~~~~~~i~~~L~kl~~D-~d~~VR~~A-~~L~~l~ 100 (541)
+.-++-|+|-++.++.|++++||..|.+++..+....++ +..-+-+=+||.|..+..| ....||-+= ..|..+.
T Consensus 457 e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 457 EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 566788999999999999999999999998887655542 2223344589999999999 566777554 4555554
Q ss_pred hHhhcccchhcHhhhHHHHHH-----HhcCCCHHHHHHHHHHHHHhhcCCCc----hhhhchHHHHHHHHHHcCCCCHHH
Q 009182 101 KDIVTESDQFSIEEFIPLLRE-----RMNVLNPYVRQFLVGWITVLDSVPDI----DMLGFLPDFLDGLFNMLSDSSHEI 171 (541)
Q Consensus 101 kdi~~e~~~~~l~~~iP~L~e-----~l~d~~~~vR~~a~~~l~~L~~~~~~----~l~~~lp~~L~~L~~lL~D~~~eV 171 (541)
+... .|.-.-++ ..+++|.+ ..+.. +.......+-+....+++|+.+-|
T Consensus 537 ~tA~---------rFle~~q~~~~~g~~n~~nse-------------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~V 594 (1431)
T KOG1240|consen 537 KTAY---------RFLELTQELRQAGMLNDPNSE-------------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIV 594 (1431)
T ss_pred HHHH---------HHHHHHHHHHhcccccCcccc-------------cccccccchHHHHHHHHHHHHHHHHHcCCchHH
Confidence 4221 11111111 12233332 11111 222223333344557899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC-cccchhhHHHHHhhhcCCCC
Q 009182 172 RQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVPYYADILGAILPCISDKE 250 (541)
Q Consensus 172 R~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~-l~p~l~~llp~ll~~l~d~~ 250 (541)
|++-.+.+..++.-+|+... -+-+++.|+..++|.||..|-+-..-|.-.+-.-|.. . -.-++|.+.+.++|.+
T Consensus 595 kr~Lle~i~~LC~FFGk~ks--ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~---seyllPLl~Q~ltD~E 669 (1431)
T KOG1240|consen 595 KRALLESIIPLCVFFGKEKS--NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSV---SEYLLPLLQQGLTDGE 669 (1431)
T ss_pred HHHHHHHHHHHHHHhhhccc--ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeH---HHHHHHHHHHhccCcc
Confidence 99988889999888875432 3457888888899999999865443332111111222 2 2458899999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChH---------HHhhhhHHH
Q 009182 251 EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT---------EVLHFLNDI 321 (541)
Q Consensus 251 ~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~---------~i~~~l~~l 321 (541)
+-|-..|..+...|.+.--- ....+-+++.-..-.|-+++-.+|.+++..+.+.++.... -+.||++.-
T Consensus 670 E~Viv~aL~~ls~Lik~~ll--~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~ 747 (1431)
T KOG1240|consen 670 EAVIVSALGSLSILIKLGLL--RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERP 747 (1431)
T ss_pred hhhHHHHHHHHHHHHHhccc--chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhcc
Confidence 88876666666655443110 0112344555555666789999999999999988887643 233444332
Q ss_pred H------HHHHHhcCCCCHH
Q 009182 322 F------DTLLKALSDPSDE 335 (541)
Q Consensus 322 ~------p~Ll~~L~D~~~~ 335 (541)
+ +.|+.++.+|.+.
T Consensus 748 v~~i~s~~~LlsclkpPVsR 767 (1431)
T KOG1240|consen 748 VIQIESKEVLLSCLKPPVSR 767 (1431)
T ss_pred HhhhcchHHHHHHhcCCCcH
Confidence 2 3688888888654
No 49
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.64 E-value=3.1e-06 Score=95.60 Aligned_cols=290 Identities=18% Similarity=0.223 Sum_probs=195.5
Q ss_pred hhHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHH---hHhhccc
Q 009182 33 IVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV---KDIVTES 107 (541)
Q Consensus 33 ii~~vl~~l~D-~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~---kdi~~e~ 107 (541)
+++.+..|+.. +...-+..|.+-+..+++....+. .+..|+|.+..+..|+++.||..| +.|.+++ +++....
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 55666666643 233445566666666666555444 367899999999999999999999 8776664 3444333
Q ss_pred chhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHH--HHHHcCCCCHH--HHHHHHHHHHHH
Q 009182 108 DQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG--LFNMLSDSSHE--IRQQADSALWEF 182 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~--L~~lL~D~~~e--VR~~a~~~L~~l 182 (541)
...-.+.+.|.|..+..| .+..||-.-.+.|..|+...- .+=.+-.. .-.+++|++.+ ....-..-++.+
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~-----rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L 575 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY-----RFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL 575 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH-----HHHHHHHHHHhcccccCcccccccccccchHHHHH
Confidence 344578889999999999 778999999999998876542 11111111 11357777654 111111222223
Q ss_pred HHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 009182 183 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (541)
Q Consensus 183 l~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~ 262 (541)
...+ -......+.++++.||++-++-|..++...|..=. =.-|++.+...|.|.+...|.+..+...
T Consensus 576 ~~~V-----------~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks--ND~iLshLiTfLNDkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 576 HHTV-----------EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS--NDVILSHLITFLNDKDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHH-----------HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc--ccchHHHHHHHhcCccHHHHHHHHhhcc
Confidence 2221 12233446688899999999888888887664322 2457888889999999998866555433
Q ss_pred HHHHhhcCCCCCCC-h-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHH
Q 009182 263 ELRAIKADPADGFD-V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV 340 (541)
Q Consensus 263 ~L~~~i~~~~~~~~-l-~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~ 340 (541)
.+.-.++ +- . +-++|.|.+.|.+..+.+-+.||.++..|.+..--+ .++.-+++...+..|..|+.=||+.+
T Consensus 643 gvsi~VG-----~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~-K~~v~~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 643 GVSIFVG-----WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR-KPAVKDILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred ceEEEEe-----eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc-hHHHHHHHHhhhhheeCchHHHHHHH
Confidence 2211122 21 2 458899999999999999999999888877764211 23566777778888999999999999
Q ss_pred HHHHHHHh
Q 009182 341 LEVHACIA 348 (541)
Q Consensus 341 ~~~L~~i~ 348 (541)
|..+..++
T Consensus 717 ~~iI~~~~ 724 (1431)
T KOG1240|consen 717 LGIIAAIA 724 (1431)
T ss_pred HHHHHHHH
Confidence 99999988
No 50
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.2e-05 Score=85.95 Aligned_cols=268 Identities=18% Similarity=0.158 Sum_probs=178.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch---
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--- 148 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~--- 148 (541)
-+...+..+..|.|.+||..| ++|-.+-+ +-.--...-....+.+.|.+..||..|++.+....+..+..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e------g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE------GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc------cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 355568889999999999999 77544433 11111223556678889999999999999999888776322
Q ss_pred ---hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH-HhcCC---------CCHHHHHH
Q 009182 149 ---MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILV-QRAAS---------PDEFTRLT 215 (541)
Q Consensus 149 ---l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll-~~~~~---------~~~~vr~~ 215 (541)
=....+..+..++..++|.+-.||..|.++++.+-.. .++++.-.+ +..-+ ..+.-...
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v--------See~i~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV--------SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh--------HHHHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 2246777888999999999999999999999988531 222332222 11111 11111111
Q ss_pred HHHHHH--HH-HhhcCcCcccchhhHH-----HHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCh-HhHHHHHHH
Q 009182 216 AITWIN--EF-VKLGGDQLVPYYADIL-----GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATR 286 (541)
Q Consensus 216 al~wL~--~l-~~~~~~~l~p~l~~ll-----p~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l-~~il~~L~~ 286 (541)
..+|-. +. ++++.+..-.--..|+ .++...+.|.-.|||.+|......|. .+. ..+ ..-+..|..
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La---~ss---P~FA~~aldfLvD 417 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLA---TSS---PGFAVRALDFLVD 417 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHH---cCC---CCcHHHHHHHHHH
Confidence 111211 00 0111000000001122 35666777878899999887766663 221 223 367889999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHhc
Q 009182 287 QLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNF 365 (541)
Q Consensus 287 ~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~-~~~~~f~~~m~~LL~~~ 365 (541)
+++++...+|+.|+..+.++..+ ...-++.++.++++|.|.+++||...-++|+.-- +..+-++..+..+++.+
T Consensus 418 MfNDE~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 418 MFNDEIEVVRLKAIFALTMISVH-----LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred HhccHHHHHHHHHHHHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999988 2345788999999999999999998888888755 45667888888888755
No 51
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.8e-06 Score=86.46 Aligned_cols=268 Identities=22% Similarity=0.182 Sum_probs=172.1
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh--chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHh------Hh
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVV--RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK------DI 103 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~--~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~k------di 103 (541)
-+|-+...+...|..||||+|.++.+|+-.. +......=+.++|.|..++.|+++.||-.| .+|..+.. ++
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ei 288 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREI 288 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHH
Confidence 4577788899999999999999999998443 232333335689999999999999999888 67765532 12
Q ss_pred hcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Q 009182 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEF 182 (541)
Q Consensus 104 ~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~-~~eVR~~a~~~L~~l 182 (541)
+ +.+. +|.+.+.++++.-.--..-+.+|.+++-.|..+....=..|+.+|..+|.-. +.+++-.|...|..+
T Consensus 289 v-~ag~------lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnL 361 (550)
T KOG4224|consen 289 V-EAGS------LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNL 361 (550)
T ss_pred H-hcCC------chHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHH
Confidence 2 2333 8999999977654444555667777766665544333446888899899765 455888888888887
Q ss_pred HHHhcCCCCCC-hHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHH
Q 009182 183 LQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLT--AITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARE 259 (541)
Q Consensus 183 l~~i~~~~~~~-~~~ii~~Ll~~~~~~~~~vr~~--al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~ 259 (541)
...-......- -..-||.+.+...|..-.+|.. ++...-.+.+..+..+. =..++|+++++..+...++|.-|..
T Consensus 362 Aasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~ll--d~gi~~iLIp~t~s~s~Ev~gNaAa 439 (550)
T KOG4224|consen 362 AASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALL--DSGIIPILIPWTGSESEEVRGNAAA 439 (550)
T ss_pred hhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHh--hcCCcceeecccCccchhhcccHHH
Confidence 65332211111 1345677777777776666644 44433334444455443 2478999999999999999988877
Q ss_pred HHHHHHHhhcCC---CCCCC--hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 260 TNEELRAIKADP---ADGFD--VGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (541)
Q Consensus 260 ~~~~L~~~i~~~---~~~~~--l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~ 309 (541)
++..+..-+..- -+.|+ .+.+=..|.+.+.+.....|--+.-.+.+|.+-
T Consensus 440 AL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 440 ALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 777664332210 01132 245555666666555444454444444555543
No 52
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=7.3e-05 Score=85.04 Aligned_cols=348 Identities=13% Similarity=0.116 Sum_probs=223.6
Q ss_pred CHHHHHHHHHHHHHHHHHhc---h-----h-hhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHH----HHhHhhcccchhc
Q 009182 45 DSRVRYYACEALYNIAKVVR---G-----D-FIIFFNQIFDALCKLSADSDANVQSAAHLLDR----LVKDIVTESDQFS 111 (541)
Q Consensus 45 d~~VR~~A~eaL~~i~k~~~---~-----~-~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~----l~kdi~~e~~~~~ 111 (541)
.+..|-+.|.+|..++.... . + ...+-...+|.+++..+.+.+.-|......+. ...+..+.+++..
T Consensus 530 ~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv 609 (1176)
T KOG1248|consen 530 RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDV 609 (1176)
T ss_pred chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHH
Confidence 34778888888777775531 0 1 11233345566665544433322211111111 2223333333334
Q ss_pred HhhhHHHHHHHhcCCCHHHHHH----HHHHHHHhhcCCCchhhhchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Q 009182 112 IEEFIPLLRERMNVLNPYVRQF----LVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~----a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i 186 (541)
...+...+.+...+.+..++.+ .+..+..++...+. .+...++ .+..... -.++.+++-+-..|+.++..
T Consensus 610 ~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e---~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~- 684 (1176)
T KOG1248|consen 610 VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE---SQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSS- 684 (1176)
T ss_pred HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc---hhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcC-
Confidence 4444555555555543333322 22223333333222 1222222 2222332 33678888888999888765
Q ss_pred cCCC---CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 009182 187 KNSP---SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (541)
Q Consensus 187 ~~~~---~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~ 263 (541)
+... ...++.+.+.+....++.....|...+.-+..+.+..+.+...++++.+|.++-++++.+...|+.|.+++..
T Consensus 685 ~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~ 764 (1176)
T KOG1248|consen 685 PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVF 764 (1176)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHH
Confidence 1110 1236788888888888888888888888888888888877888999999988888888888889999998887
Q ss_pred HH--HhhcCCCCCC---ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHH-hhhhHHHHHHHHHhcCCCCHHHH
Q 009182 264 LR--AIKADPADGF---DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVV 337 (541)
Q Consensus 264 L~--~~i~~~~~~~---~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i-~~~l~~l~p~Ll~~L~D~~~~V~ 337 (541)
++ ....+.++.. .+.++++.+...+-++....+-+.+-.+.+++....+.+ .+.++.++..+--.|...+++|+
T Consensus 765 i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~ 844 (1176)
T KOG1248|consen 765 IGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIA 844 (1176)
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHH
Confidence 77 3333333322 356788888888765554444444677777777766555 35788899999999999999999
Q ss_pred HHHHHHHHHHhc------chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHH
Q 009182 338 LLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELS 397 (541)
Q Consensus 338 ~~~~~~L~~i~~------~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~ 397 (541)
..|...++.... -.++.+.+|+.++.+.++.+.....+...++..||..-|.+.+=..+.
T Consensus 845 kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 845 KAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 999999998772 246788899999998888777777788889999999999876654444
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00029 Score=76.41 Aligned_cols=197 Identities=20% Similarity=0.227 Sum_probs=122.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh
Q 009182 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (541)
Q Consensus 72 ~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~ 150 (541)
.++-+-+..+++.+-+-||+-| ..|.+++-... -++..-.|.|.|.+.|++|.|..+|++.|..|+.-.|.+.+
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 4678888899999999999999 77777765343 23555599999999999999999999999999999999877
Q ss_pred hchHHHHHHHHHHcCCCC-------------------HHH-------------HHHHHHHHHHHHHHhcCC----CCCCh
Q 009182 151 GFLPDFLDGLFNMLSDSS-------------------HEI-------------RQQADSALWEFLQEIKNS----PSVDY 194 (541)
Q Consensus 151 ~~lp~~L~~L~~lL~D~~-------------------~eV-------------R~~a~~~L~~ll~~i~~~----~~~~~ 194 (541)
+.-|.|+. +|.+++ |-. +..|.+.+=+.+..+... ..++-
T Consensus 218 ~LAP~ffk----llttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 218 QLAPLFYK----LLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred cccHHHHH----HHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 77777755 443322 111 122333333333332211 01121
Q ss_pred ----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 195 ----GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 195 ----~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
+--+..|-..+.|+|+..+.-.+-.++.+++.-+.. ...--..++.||.|.++.||-.|.. .+..++..
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~----Vqa~kdlIlrcL~DkD~SIRlrALd---Ll~gmVsk 366 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA----VQAHKDLILRCLDDKDESIRLRALD---LLYGMVSK 366 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH----HHHhHHHHHHHhccCCchhHHHHHH---HHHHHhhh
Confidence 122233333455666666666555555554443332 2334568899999999999966644 34444433
Q ss_pred CCCCCChHhHHHHHHHhc
Q 009182 271 PADGFDVGPILSIATRQL 288 (541)
Q Consensus 271 ~~~~~~l~~il~~L~~~L 288 (541)
+ ++.+|+..|+.++
T Consensus 367 k----Nl~eIVk~LM~~~ 380 (877)
T KOG1059|consen 367 K----NLMEIVKTLMKHV 380 (877)
T ss_pred h----hHHHHHHHHHHHH
Confidence 1 3445555555544
No 54
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.51 E-value=3.4e-06 Score=93.16 Aligned_cols=191 Identities=18% Similarity=0.254 Sum_probs=151.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHhHhhc---cc---------chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009182 73 QIFDALCKLSADSDANVQSAAHLLDRLVKDIVT---ES---------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITV 140 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi~~---e~---------~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~ 140 (541)
++...+..++++|+.. ..+|.+++=+..|... .. .++--..++|.+.+.+.+....+|-..+..+..
T Consensus 815 ~ia~klld~Ls~~~~g-~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 815 EIAEKLLDLLSGPSTG-SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred hHHHHHHHhcCCcccc-chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 5666666677775432 1222555444443321 10 123346779999999998778889888888875
Q ss_pred h-hcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCC---HHHHHHH
Q 009182 141 L-DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD---EFTRLTA 216 (541)
Q Consensus 141 L-~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~---~~vr~~a 216 (541)
+ ..+|...+.+.+|.++|-|++.|+=++.+||..+.+++..++.+-+.-..-|.+.++|+++....+.+ -.||..|
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence 4 56777778999999999999999999999999999999999987765555679999999999888777 4689999
Q ss_pred HHHHHHHHh-hcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 217 ITWINEFVK-LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 217 l~wL~~l~~-~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
+..++.+.+ .+...+.||-|+++.++.+.+.|...-||+.|.++.+.-
T Consensus 974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 999999988 677889999999999999999999999999998887643
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=9.9e-05 Score=80.88 Aligned_cols=273 Identities=16% Similarity=0.233 Sum_probs=151.9
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
+...+.+-|+..+. +..|.||..+...++.+.. +++.|.+.++++.+++.||+-| -+.-+++... ...
T Consensus 108 ltNslknDL~s~nq---~vVglAL~alg~i~s~Ema---rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-----P~l 176 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQ---YVVGLALCALGNICSPEMA---RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-----PDL 176 (866)
T ss_pred HHHHHHhhccCCCe---eehHHHHHHhhccCCHHHh---HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-----chH
Confidence 44555555555554 4555566666655666653 6889999999999999999988 5555554411 234
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCC-------C--------HHHHHHHH
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS-------S--------HEIRQQAD 176 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~-------~--------~eVR~~a~ 176 (541)
++.|+|...+++.+.++-|-...+..+..++++.+. .+.|+-++.++++..|.+- . |=.+....
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 788999999999999998888888888888887663 4456666666666555331 0 11111111
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHH
Q 009182 177 SALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (541)
Q Consensus 177 ~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~-~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~ 255 (541)
. +++..|+. +.+....+.-++...- ..|. - +-.|..+ +=+.+-.|+. -++++..|.
T Consensus 256 r----lLriLGq~-d~daSd~M~DiLaqvatntds-s------------kN~GnAI---LYE~V~TI~~--I~~~~~Lrv 312 (866)
T KOG1062|consen 256 R----LLRILGQN-DADASDLMNDILAQVATNTDS-S------------KNAGNAI---LYECVRTIMD--IRSNSGLRV 312 (866)
T ss_pred H----HHHHhcCC-CccHHHHHHHHHHHHHhcccc-c------------ccchhHH---HHHHHHHHHh--ccCCchHHH
Confidence 1 22222221 2222222222222111 0000 0 0000000 0011111110 023444555
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHH
Q 009182 256 VARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 335 (541)
Q Consensus 256 ~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~ 335 (541)
.|.++.+.+ |.+.+-.+|.-||..|.......|.-+..| =.+++.||+|+++.
T Consensus 313 lainiLgkF-----------------------L~n~d~NirYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~S 365 (866)
T KOG1062|consen 313 LAINILGKF-----------------------LLNRDNNIRYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVS 365 (866)
T ss_pred HHHHHHHHH-----------------------hcCCccceeeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHH
Confidence 555554444 444455566666776666666666666555 23556777788877
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHhcccc
Q 009182 336 VVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD 368 (541)
Q Consensus 336 V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~ 368 (541)
++..|+++.-.+. +++....+++.|+..+...
T Consensus 366 IkrralELs~~lv-n~~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 366 IKRRALELSYALV-NESNVRVMVKELLEFLESS 397 (866)
T ss_pred HHHHHHHHHHHHh-ccccHHHHHHHHHHHHHhc
Confidence 8877777777776 3556666666666665433
No 56
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00026 Score=77.47 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=89.7
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHH------------------------------HHHHH
Q 009182 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI------------------------------FDTLL 326 (541)
Q Consensus 277 l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l------------------------------~p~Ll 326 (541)
...+++.|.+.|++ +.++|.-+|+.+..+..+.|.-+.||+..+ ++.+.
T Consensus 320 ~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q 398 (968)
T KOG1060|consen 320 VTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ 398 (968)
T ss_pred HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 45677888885554 556788889999999988887777775543 33333
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhh--HHHHHHHHhcc
Q 009182 327 KALSDPSDEVVLLVLEVHACIAKD-LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER--VYRELSTILEG 402 (541)
Q Consensus 327 ~~L~D~~~~V~~~~~~~L~~i~~~-~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~--i~~~l~~il~~ 402 (541)
...++++-++...+.+++++.++. ...=+..|.+|++++++....+-.-+..+||.|=..=.+++ |..++++.+..
T Consensus 399 ~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldt 477 (968)
T KOG1060|consen 399 TYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDT 477 (968)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhh
Confidence 334455556888888999988843 33446789999999976655555566788888877666676 88999998865
No 57
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00034 Score=76.71 Aligned_cols=344 Identities=17% Similarity=0.184 Sum_probs=221.7
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHHhHhhcccchhc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH-LLDRLVKDIVTESDQFS 111 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~-~L~~l~kdi~~e~~~~~ 111 (541)
.++.++.-++|++|.+|.-|...+..+- +-..+.-+++.+.+++.|.++-||..|. ...++.. +-. ....
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-~~~--~~~~ 157 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLR------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-IDP--DLVE 157 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEe------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-CCh--hhcc
Confidence 3477888899999999998876544321 1122356789999999999999999994 4333322 211 1122
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-chhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~-~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~ 190 (541)
-..|++.|...+.|.||.|-..++.++..+.+..+ .......+.+...++..+.+-+.=-|-.. ++.+..-..+.
T Consensus 158 ~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~I---L~~l~~y~p~d- 233 (734)
T KOG1061|consen 158 DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFI---LDCLAEYVPKD- 233 (734)
T ss_pred ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHH---HHHHHhcCCCC-
Confidence 34569999999999999999999999999877654 45666677777777777766554444444 44344333322
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 191 ~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
+.+...|++-+..+.++.++.+...+..-+-.+....+.--..++.++-|.+...++. .+++.-+|.+....+. ..
T Consensus 234 ~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil---~~ 309 (734)
T KOG1061|consen 234 SREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLIL---QK 309 (734)
T ss_pred chhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHH---Hh
Confidence 2346789999989999888877766665444444433321112344555555555443 3476656654333221 11
Q ss_pred CCCCCChHhHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009182 271 PADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (541)
Q Consensus 271 ~~~~~~l~~il~~L~~~L~---~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i 347 (541)
.+.++..-.+.+. ++...++..-++.+..++... -+.++++.+..--.+-+.+.+.++.++++++
T Consensus 310 ------~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~------nl~qvl~El~eYatevD~~fvrkaIraig~~ 377 (734)
T KOG1061|consen 310 ------RPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA------NLAQVLAELKEYATEVDVDFVRKAVRAIGRL 377 (734)
T ss_pred ------ChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh------HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhh
Confidence 2345555455542 344557888888888777654 3556777777777888888999999999999
Q ss_pred h-cchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhcccCCh
Q 009182 348 A-KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGEADL 406 (541)
Q Consensus 348 ~-~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~~~~d~ 406 (541)
+ +-++. ...+..||+.+.......-.-.-.+||.+-.+.+. +.|...+...+..-+|.
T Consensus 378 aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~ep 438 (734)
T KOG1061|consen 378 AIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEP 438 (734)
T ss_pred hhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCCh
Confidence 8 33333 88899999988755333222335667776666553 56666666666654443
No 58
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.38 E-value=0.00011 Score=76.06 Aligned_cols=247 Identities=23% Similarity=0.249 Sum_probs=170.3
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhc-CCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~-D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
....+|++...+.|+++.||..|..+++++.. ++..+.+.++++ |++..||..| .+|.++-. +
T Consensus 72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----~- 136 (335)
T COG1413 72 SEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDENEGVRAAAARALGKLGD----E- 136 (335)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----h-
Confidence 34577999999999999999999998876541 455677777666 8999999999 66555321 1
Q ss_pred chhcHhhhHHHHHHHhcCCC------------HHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHH
Q 009182 108 DQFSIEEFIPLLRERMNVLN------------PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~------------~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a 175 (541)
.. ++.+.+.+.+++ ..+|..++..++.+.. |...+.+...+.|++.+||..+
T Consensus 137 --~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 137 --RA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD----------PEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred --hh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHH
Confidence 11 555555555544 2577777777765432 2334566678999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHH
Q 009182 176 DSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (541)
Q Consensus 176 ~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~ 255 (541)
...++.+... ...+.+.+.....++++.+|..++..++.. -..+-.+.+...+.+.+..++.
T Consensus 201 a~aL~~~~~~--------~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~----------~~~~~~~~l~~~l~~~~~~~~~ 262 (335)
T COG1413 201 ASALGQLGSE--------NVEAADLLVKALSDESLEVRKAALLALGEI----------GDEEAVDALAKALEDEDVILAL 262 (335)
T ss_pred HHHHHHhhcc--------hhhHHHHHHHHhcCCCHHHHHHHHHHhccc----------CcchhHHHHHHHHhccchHHHH
Confidence 9998877532 246778888999999999999988766532 1356677778888888877765
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHH
Q 009182 256 VARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 335 (541)
Q Consensus 256 ~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~ 335 (541)
.+....+ .++...-...+...+.+..+..|..+...++....... .........|....
T Consensus 263 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~a~~~~~~~~~~~ 321 (335)
T COG1413 263 LAAAALG-----------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA----------VAALLLALEDGDAD 321 (335)
T ss_pred HHHHHhc-----------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch----------HHHHHHHhcCCchh
Confidence 5554443 12233444555666777788888888887776666552 33445566677777
Q ss_pred HHHHHHHHHHH
Q 009182 336 VVLLVLEVHAC 346 (541)
Q Consensus 336 V~~~~~~~L~~ 346 (541)
++.........
T Consensus 322 ~~~~~~~~~~~ 332 (335)
T COG1413 322 VRKAALILLEG 332 (335)
T ss_pred hHHHHHHHHHh
Confidence 77766655543
No 59
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.5e-05 Score=85.40 Aligned_cols=260 Identities=20% Similarity=0.198 Sum_probs=170.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHh-h---cc-cc
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI-V---TE-SD 108 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi-~---~e-~~ 108 (541)
..+..+.+|.|.+||..|.+++..+.+..+ --..+.....+.++|.+.+||++| .++.-..+-. + .+ .+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-----L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-----LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccccc-----ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 447778899999999999999888876332 113456677889999999999999 6542222111 1 11 12
Q ss_pred hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHH-HH-----------------------------
Q 009182 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDF-LD----------------------------- 158 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~-L~----------------------------- 158 (541)
..-.+.....+.+.++|.+..||-.+...+|.+-.+...=+..-++.= +.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 234455567788889999999999998888776554432111111100 00
Q ss_pred --------------------H-HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh-HHHHHHHHHhcCCCCHHHHHHH
Q 009182 159 --------------------G-LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTA 216 (541)
Q Consensus 159 --------------------~-L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~-~~ii~~Ll~~~~~~~~~vr~~a 216 (541)
| +..-+.|...|||++|...+..+.. . .|.+ ..-+..|+...+|..+.||+.|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~---s--sP~FA~~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT---S--SPGFAVRALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc---C--CCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence 0 1123456668999999888887763 2 3444 5678889999999999999999
Q ss_pred HHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCh---HhHHHHHHHhcCCCCH
Q 009182 217 ITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWE 293 (541)
Q Consensus 217 l~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l---~~il~~L~~~L~~~~~ 293 (541)
++.+..++.... -=...++.++.++.|..++||+...+.++.. +. .++ .-.+..+...|.. -.
T Consensus 431 i~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~-------~d~~~i~m~v~~lL~~L~k-yP 496 (823)
T KOG2259|consen 431 IFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNA-RV-------SDLECIDMCVAHLLKNLGK-YP 496 (823)
T ss_pred HHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CC-------CcHHHHHHHHHHHHHHhhh-CC
Confidence 999998876522 2367899999999999999998877655422 11 111 2223333333321 11
Q ss_pred HHHHHHHHHHHHHHhhChHHHhhhh
Q 009182 294 ATRIEALHWISTLLNRHRTEVLHFL 318 (541)
Q Consensus 294 ~~R~aal~wL~~L~~~~~~~i~~~l 318 (541)
..|-..+.+++.++++-+.-+....
T Consensus 497 qDrd~i~~cm~~iGqnH~~lv~s~m 521 (823)
T KOG2259|consen 497 QDRDEILRCMGRIGQNHRRLVLSNM 521 (823)
T ss_pred CCcHHHHHHHHHHhccChhhHHHHH
Confidence 2366777888899888876655433
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.34 E-value=0.00016 Score=76.47 Aligned_cols=240 Identities=13% Similarity=-0.006 Sum_probs=159.5
Q ss_pred HHHHHHHHHhh-cCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchh
Q 009182 72 NQIFDALCKLS-ADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (541)
Q Consensus 72 ~~i~~~L~kl~-~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l 149 (541)
+...+.+...+ .|+++.|+..| .++... + + ...+..+.+.+.|.++.||..+.+.++.+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~------~-~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ------E-D----ALDLRSVLAVLQAGPEGLCAGIQAALGWL-------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc------C-C----hHHHHHHHHHhcCCCHHHHHHHHHHHhcC--------
Confidence 34566677767 68888888766 332211 1 1 11278888899999999999999998842
Q ss_pred hhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 009182 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (541)
Q Consensus 150 ~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~ 229 (541)
.-|...+.|..+++|.++.||..+..+++... .+ -.+.+...++++++.||..|+..++.+-.
T Consensus 114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~---~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HD---PGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cC---hHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 23455667777999999999998866655421 11 13456666779999999999888776532
Q ss_pred CcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (541)
Q Consensus 230 ~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~ 309 (541)
+..+|.+...+.|.+++||..|......+ + -+..++.+.......+...+.....++...
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~l----G-------~~~A~~~l~~~~~~~g~~~~~~l~~~lal~--- 236 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLA----G-------SRLAWGVCRRFQVLEGGPHRQRLLVLLAVA--- 236 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHc----C-------CHhHHHHHHHHHhccCccHHHHHHHHHHhC---
Confidence 23344455668999999999988776544 1 134455666544555555554444443332
Q ss_pred ChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHHHHHHh
Q 009182 310 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRL 383 (541)
Q Consensus 310 ~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~L 383 (541)
..+..++.|...+.|+. |+..++++++.+.. ...++.|++.+.++. +...+...++++
T Consensus 237 -------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-----p~av~~L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 237 -------GGPDAQAWLRELLQAAA--TRREALRAVGLVGD-----VEAAPWCLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred -------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCC-----cchHHHHHHHhcCcH--HHHHHHHHHHHh
Confidence 12367777888888865 89999999998885 346667777776665 444555555544
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.0011 Score=75.89 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=168.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHH--HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch--
Q 009182 73 QIFDALCKLSADSDANVQSAA--HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-- 148 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A--~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-- 148 (541)
.+.+....+.+|.|..++.-- ..||-++.-...+ +.-.+..+-....+.-+..++.++.-+-..+..+...+..+
T Consensus 612 ~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~-~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~ 690 (1176)
T KOG1248|consen 612 SLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQ-TESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGL 690 (1176)
T ss_pred HHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccc-cchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhH
Confidence 445555566777775544332 3344444322112 12222222222223334457889998888898888774332
Q ss_pred hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-
Q 009182 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKL- 226 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~- 226 (541)
...++..+...|+.-+.+.....|.....|+..+++..... ..+ +...||-++-..++.+..-|.+|..-|.++..+
T Consensus 691 ~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e-~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~ 769 (1176)
T KOG1248|consen 691 VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAE-HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQ 769 (1176)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHH
Confidence 22344444444444444556677888999999999876511 112 344444444444777777777776655555421
Q ss_pred ----cC-cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCC---ChHhHHHHHHHhcCCCCHHHHHH
Q 009182 227 ----GG-DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF---DVGPILSIATRQLSSEWEATRIE 298 (541)
Q Consensus 227 ----~~-~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~---~l~~il~~L~~~L~~~~~~~R~a 298 (541)
.| +.--.-+...++.|...+..+.... .|.. .-.+...+.+.++.. -+..++..+...+.+.+-+.|.+
T Consensus 770 ~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~--~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~ka 846 (1176)
T KOG1248|consen 770 SSLDDGNEPASAILNEFLSIISAGLVGDSTRV--VASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKA 846 (1176)
T ss_pred hhhcccccchHHHHHHHHHHHHhhhcccHHHH--HHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 12 1101123445555555444333332 2322 111211111111111 24678888888889999999999
Q ss_pred HHHHHHHHHhhChHHH-hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chhhHHHHHHHHH
Q 009182 299 ALHWISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLV 362 (541)
Q Consensus 299 al~wL~~L~~~~~~~i-~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~~f~~~m~~LL 362 (541)
|+..+..+..+.|..+ .+|.+.++|.++...+|-.-.+|.++-.++.++.. +.++++.|++...
T Consensus 847 AI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~ 913 (1176)
T KOG1248|consen 847 AIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEED 913 (1176)
T ss_pred HHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHH
Confidence 9999999999999875 68999999999999889899999999888888772 3444555554433
No 62
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0027 Score=69.75 Aligned_cols=312 Identities=15% Similarity=0.125 Sum_probs=172.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHh
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~ 113 (541)
..+.+.|+||++.+|..|..++..|=- +.+. +-++-++-++..|+.+-||+.| .++.++-. + +.+. -+
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRv---p~Ia---PI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-L--d~e~--k~ 179 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRV---PMIA---PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-L--DPEQ--KD 179 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcch---hhHH---HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-C--Chhh--HH
Confidence 677889999999999999877765421 1121 3345566788999999999988 66555432 1 1112 23
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC----
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS---- 189 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~---- 189 (541)
.++..+.+.+.|.+|-|--.++-+...+ .+.. +..+..-...+|+++.|.+.==+....+.|.+..+.---.
T Consensus 180 qL~e~I~~LLaD~splVvgsAv~AF~ev---CPer-ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~ 255 (968)
T KOG1060|consen 180 QLEEVIKKLLADRSPLVVGSAVMAFEEV---CPER-LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVV 255 (968)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHh---chhH-HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccc
Confidence 6788888889999998887777665543 3321 1333344444555555543222222222222221110000
Q ss_pred ----------------------C---CC-----------------------------------ChHHHHHHHHHhcCCCC
Q 009182 190 ----------------------P---SV-----------------------------------DYGRMAEILVQRAASPD 209 (541)
Q Consensus 190 ----------------------~---~~-----------------------------------~~~~ii~~Ll~~~~~~~ 209 (541)
| ++ +...|+..|+..+++ +
T Consensus 256 ~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~ 334 (968)
T KOG1060|consen 256 DSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-N 334 (968)
T ss_pred ccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-C
Confidence 0 01 234455555554432 3
Q ss_pred HHHHHHHHHHHHHHHhhcCcCcccch------------------------------hhHHHHHhhhcCCCChhHHHHHHH
Q 009182 210 EFTRLTAITWINEFVKLGGDQLVPYY------------------------------ADILGAILPCISDKEEKIRVVARE 259 (541)
Q Consensus 210 ~~vr~~al~wL~~l~~~~~~~l~p~l------------------------------~~llp~ll~~l~d~~~~iR~~A~~ 259 (541)
.++|...+.-|..++..-+.-+.||+ +.|++.+.....+++.++-.+|.+
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~ 414 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVK 414 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 34444444444444443333333432 333333333333333333333444
Q ss_pred HHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHH
Q 009182 260 TNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLL 339 (541)
Q Consensus 260 ~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~ 339 (541)
+.|.....++.- -+..++-|...+.+.+..+--++...+..|.+..|..-...+.++...+ .++ ..|.-|..
T Consensus 415 AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll-dti--~vp~ARA~ 486 (968)
T KOG1060|consen 415 AIGRCASRIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL-DTI--LVPAARAG 486 (968)
T ss_pred HHHHHHHhhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh-hhh--hhhhhhce
Confidence 444443333221 2567778888887777777777888888888888877544433333322 111 14566778
Q ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHhccccch
Q 009182 340 VLEVHACIAKD-LQHFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 340 ~~~~L~~i~~~-~~~f~~~m~~LL~~~~~~~~ 370 (541)
.+|+++++++. ...-.+|+..+.+-|.++..
T Consensus 487 IiWLige~~e~vpri~PDVLR~laksFs~E~~ 518 (968)
T KOG1060|consen 487 IIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGD 518 (968)
T ss_pred eeeeehhhhhhcchhchHHHHHHHHhhccccc
Confidence 88999998853 33456677788888877654
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.20 E-value=6.9e-06 Score=70.78 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=84.9
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHH-HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFN-QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~-~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
.+++.++..+.|+++++|..|+.++.++++........... .++|.+.+++.|+++.|+..| .+|.+++.+-......
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 47889999999999999999999999998653222222223 789999999999999999999 8888886532111111
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD 142 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~ 142 (541)
..-..++|.+.+.+.+.+..+|..++..+.++.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 112347999999999999999999999988765
No 64
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.19 E-value=0.0011 Score=70.93 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=151.9
Q ss_pred cHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC-CCchhhhchHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhc
Q 009182 111 SIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~-~~~~l~~~lp~~L~~L~~lL-~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
..+.++..+.+...+ .++.+|..++..+..+.+. ++.+ .+.++++.+.... ++...+.|..+.+.+.=+.+..-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH
Confidence 455577777776654 6699999999999987665 4443 5666666666555 45566677777777766666665
Q ss_pred CCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc--------CcCc-----ccchhhHHHHHhhhcCCCChhHH
Q 009182 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG--------GDQL-----VPYYADILGAILPCISDKEEKIR 254 (541)
Q Consensus 188 ~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~--------~~~l-----~p~l~~llp~ll~~l~d~~~~iR 254 (541)
...++....+++.+++...+ +.+...+...++.+..-. +..+ ..++..++|.++.....++.++|
T Consensus 263 ~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 263 MRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred HcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 55567788889999988877 445555544444443221 1111 14678889999988888777777
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHh
Q 009182 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328 (541)
Q Consensus 255 ~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~ 328 (541)
...-.+...+.+-+...--.-+++.++|.+.+.|..++...|.+++..+..+.+..|+-+.+|++.++|.+++.
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 66666666655433211001256899999999999889999999999999999999999999999999999874
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00029 Score=77.32 Aligned_cols=334 Identities=20% Similarity=0.184 Sum_probs=170.8
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
++..+++..|+.+|+.|.++-||.+|+....+.-..-. +. .+-..+.+.|..++.|.++.|-..| .+|..+.+.-..
T Consensus 116 ~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~-~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 116 DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DL-VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hh-ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 67778889999999999999999999876554432111 11 1112457778888889999888878 776665442211
Q ss_pred ccc----h---------------------------------hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch
Q 009182 106 ESD----Q---------------------------------FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (541)
Q Consensus 106 e~~----~---------------------------------~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~ 148 (541)
... . .....++..+..++.+.|+.|-..++..+..+
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~------- 266 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQL------- 266 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHH-------
Confidence 000 0 11112222222222222222222222222211
Q ss_pred hhhchHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHhcCCC------------C------------------
Q 009182 149 MLGFLPDFLDGLFNML-------SDSSHEIRQQADSALWEFLQEIKNSP------------S------------------ 191 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL-------~D~~~eVR~~a~~~L~~ll~~i~~~~------------~------------------ 191 (541)
..+++.+-.++++-+ .|..+++.-.+...+..++....... +
T Consensus 267 -~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~ 345 (734)
T KOG1061|consen 267 -VKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND 345 (734)
T ss_pred -HHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence 234444333444322 23334555555444444433221100 0
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC
Q 009182 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~ 271 (541)
-.++++++-+.+-..+.|...-..++..++.++-...+. ..+++.++..+.-...-+-+.+......+.+-..
T Consensus 346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP-- 418 (734)
T KOG1061|consen 346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP-- 418 (734)
T ss_pred hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC--
Confidence 012233333333333334444444444444443322222 3445555555443222221122222222222211
Q ss_pred CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cc
Q 009182 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KD 350 (541)
Q Consensus 272 ~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~-~~ 350 (541)
-.++.+++.+...+.+-+.+.-.+|+.|+.-=+..+- +-.+.++..+++...|+..+|+..-+.+.-+.. ..
T Consensus 419 ---~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i----~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 419 ---NKYESVVAILCENLDSLQEPEAKAALIWILGEYAERI----ENALELLESFLENFKDETAEVQLELLTAAIKLFLKK 491 (734)
T ss_pred ---CchhhhhhhhcccccccCChHHHHHHHHHHhhhhhcc----CcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcC
Confidence 1357888888888877777777889999854444332 334577888899999999888886665555544 22
Q ss_pred hhhHHHHHHHHHHhc--cccchhhhhhHHHHHHHhh
Q 009182 351 LQHFRQLVVFLVHNF--RVDNSLLEKRGALIIRRLC 384 (541)
Q Consensus 351 ~~~f~~~m~~LL~~~--~~~~~ll~~r~~~iir~Lc 384 (541)
...=...++++|..- .+++.-+..||-++=|-|.
T Consensus 492 p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 492 PTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred CccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 223344555555533 2334456678877777765
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.13 E-value=4.7e-06 Score=62.11 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009182 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (541)
Q Consensus 293 ~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i 347 (541)
|.+|.+|+..|+.+.+.+++.+.++.++++|.|.+.|.|+++.||..++++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999865
No 67
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.11 E-value=3.1e-05 Score=77.13 Aligned_cols=222 Identities=21% Similarity=0.194 Sum_probs=148.2
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHH---hchhhhhHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHHhHhhcc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSADSD---ANVQSAAHLLDRLVKDIVTE 106 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~---~~~~~~~~~~~i~~~L~kl~~D~d---~~VR~~A~~L~~l~kdi~~e 106 (541)
-+|..++.+.+++..||..|.=||+||+.. +++-++.. .+++.+..++...- .-+|++.-.|+++|..--..
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~--galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC--GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc--CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 568889999999999999999999999843 23333322 34555555543332 46787778899998743333
Q ss_pred cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD-FLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~-~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
++...+..-+|.|...++..+++|-.-++=+|+-+...+...+...++. +.+.|..+|+.++..|..-+....+.++.
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT- 314 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT- 314 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee-
Confidence 3446788889999999999999999999999998888876655444432 23446678888887776666555444432
Q ss_pred hcCCCCCC--h-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc--hhhHHHHHhhhcCCCChhHHHHHHH
Q 009182 186 IKNSPSVD--Y-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRVVARE 259 (541)
Q Consensus 186 i~~~~~~~--~-~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~--l~~llp~ll~~l~d~~~~iR~~A~~ 259 (541)
|...... + -..++.+...+.++.+.+|..||..|+.+.. +...-..+ =..++|.++..|+..+..+|+.|.=
T Consensus 315 -G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-Gnteqiqavid~nliPpLi~lls~ae~k~kKEACW 391 (526)
T COG5064 315 -GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391 (526)
T ss_pred -cCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc-CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 1110000 1 2345566666778888999999988776522 11111111 1367788889998888888766643
No 68
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00087 Score=73.15 Aligned_cols=321 Identities=16% Similarity=0.202 Sum_probs=180.3
Q ss_pred hhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHH
Q 009182 21 DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (541)
Q Consensus 21 ~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l 99 (541)
-++.+ .+-++.+.|.|..||.++.+-||+.|--|++.|-+... ...+--++++... +.++.|++.+.-| -.|-..
T Consensus 124 ckLkE-~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~pDapeLi~~f--L~~e~DpsCkRNAFi~L~~~ 199 (948)
T KOG1058|consen 124 CKLKE-PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLIPDAPELIESF--LLTEQDPSCKRNAFLMLFTT 199 (948)
T ss_pred hhcCc-HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhcCChHHHHHHH--HHhccCchhHHHHHHHHHhc
Confidence 34555 67788899999999999999999999999988877531 1112223333322 4678888888877 332110
Q ss_pred HhHhhcccchhcHhhhHHHHHHHhc---CCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHH
Q 009182 100 VKDIVTESDQFSIEEFIPLLRERMN---VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQAD 176 (541)
Q Consensus 100 ~kdi~~e~~~~~l~~~iP~L~e~l~---d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~ 176 (541)
+ ++.+ +..+..++. +-++.....+++.|.......+..-. .++..+..+|+-+++.|+-+|.
T Consensus 200 ------D-~ErA----l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~----~~i~~i~~lL~stssaV~fEaa 264 (948)
T KOG1058|consen 200 ------D-PERA----LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA----RYIRCIYNLLSSTSSAVIFEAA 264 (948)
T ss_pred ------C-HHHH----HHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh----HHHHHHHHHHhcCCchhhhhhc
Confidence 0 0011 111222221 11233344444444444332222111 2233344455555555555443
Q ss_pred HHHHHHHHHhcCCCCCC-hHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHH
Q 009182 177 SALWEFLQEIKNSPSVD-YGRMAEILVQR-AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 254 (541)
Q Consensus 177 ~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~-~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR 254 (541)
..+..+- +.+. +..-...++.. .+.+|-.++.-.+.-+.++..... .-+..++--+++.++.++-++|
T Consensus 265 ~tlv~lS------~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~il~~l~mDvLrvLss~dldvr 334 (948)
T KOG1058|consen 265 GTLVTLS------NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE----KILQGLIMDVLRVLSSPDLDVR 334 (948)
T ss_pred ceEEEcc------CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----HHHHHHHHHHHHHcCcccccHH
Confidence 3322211 0010 11111111111 112333344444444444432111 1256677777888888888888
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHH
Q 009182 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLSS-------EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK 327 (541)
Q Consensus 255 ~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~-------~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~ 327 (541)
. ++.+-.++++.+ -++++++..|.+.+.+ ++..-|..-++.+...+-+.|+ +...++|.+++
T Consensus 335 ~---Ktldi~ldLvss----rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~ 403 (948)
T KOG1058|consen 335 S---KTLDIALDLVSS----RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLD 403 (948)
T ss_pred H---HHHHHHHhhhhh----ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHH
Confidence 4 444444555554 3678999999888732 2333577777777777776654 45688999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHhccccchhhhhhHHHHHH
Q 009182 328 ALSDPSDEVVLLVLEVHACIAKDLQHFR-QLVVFLVHNFRVDNSLLEKRGALIIR 381 (541)
Q Consensus 328 ~L~D~~~~V~~~~~~~L~~i~~~~~~f~-~~m~~LL~~~~~~~~ll~~r~~~iir 381 (541)
.++|.++..-+-++..+.+..+.-+.++ .++..+++.|..-+.---.||+.||-
T Consensus 404 fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~ 458 (948)
T KOG1058|consen 404 FISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWIL 458 (948)
T ss_pred HhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHH
Confidence 9999998877777777777664333443 57888888886544444478888774
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.05 E-value=2.3e-05 Score=64.04 Aligned_cols=85 Identities=29% Similarity=0.335 Sum_probs=67.9
Q ss_pred hHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 34 VPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 34 i~~vl~~l-~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
+|.+++.+ +|+++.||..|+.++.++.. +++.|.|.++++|+++.||..| .+|.++-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 46788888 99999999999998885431 3778999999999999999999 7765531
Q ss_pred HhhhHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009182 112 IEEFIPLLRERMNV-LNPYVRQFLVGWIT 139 (541)
Q Consensus 112 l~~~iP~L~e~l~d-~~~~vR~~a~~~l~ 139 (541)
-+..+|.|.+.+.+ .+..+|..++..++
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23459999998877 56777999988874
No 70
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.04 E-value=0.00034 Score=65.63 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcC
Q 009182 168 SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (541)
Q Consensus 168 ~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~ 247 (541)
++.||..+..++++++.... .-+++.+|.+..+++|+++.||.+|+.-+..+.. .++...-++++..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHc
Confidence 57899999999999986543 2368899999999999999999999988887765 3566667888889999999
Q ss_pred CCChhHHHHHHHHHHHHHHh
Q 009182 248 DKEEKIRVVARETNEELRAI 267 (541)
Q Consensus 248 d~~~~iR~~A~~~~~~L~~~ 267 (541)
|++++||..|.....++...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999988877543
No 71
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.02 E-value=0.00025 Score=80.14 Aligned_cols=198 Identities=16% Similarity=0.165 Sum_probs=152.4
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh-hhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhh
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~-~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~ 104 (541)
...++.+.+-+...+.|++|.=|..|.+.+..+.+..+.+. ..+.+.+...+-....|.+-+|-.-| ..+..+++.+-
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45677788889999999999999999999988887766333 35555555555556789888777666 55555555333
Q ss_pred cccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 105 ~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
... ........|.+++++.+..+.+|..++.++..+.+. ..+....+.+..++++.++.+|..+...++..++
T Consensus 328 ~~~-~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 328 PLF-RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred hhh-HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 321 223556689999999999999999999999988773 3344445555559999999999999999999998
Q ss_pred HhcCCC--CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc
Q 009182 185 EIKNSP--SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (541)
Q Consensus 185 ~i~~~~--~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l 231 (541)
..+... ...+..++|.++.+..|.+..||.+|...+..+..+.|+..
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 876322 23479999999999999999999999999998888877654
No 72
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.056 Score=61.82 Aligned_cols=318 Identities=16% Similarity=0.128 Sum_probs=207.0
Q ss_pred Hhhhhhh--cchhhhhcchhHHHHhhcCCCCHHHHHH--HHHHHHHHHHHh-chhhhhHHHHHHHHHHHhhcCCCH--HH
Q 009182 17 LLYADLF--FYSETILQQIVPPVLNSFSDQDSRVRYY--ACEALYNIAKVV-RGDFIIFFNQIFDALCKLSADSDA--NV 89 (541)
Q Consensus 17 ~~~~~~~--~~~~~~l~~ii~~vl~~l~D~d~~VR~~--A~eaL~~i~k~~-~~~~~~~~~~i~~~L~kl~~D~d~--~V 89 (541)
..+++.+ .+..+++..+..-++.|-++...++-+- ...++..|.|.. ++..+++-...+..+.....+.+. -+
T Consensus 197 lllsk~~sR~D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~ll 276 (1133)
T KOG1943|consen 197 LLLSKLFSRTDVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLL 276 (1133)
T ss_pred HHHHHHcccccHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHH
Confidence 4456666 4555667777777888877776663222 345677777776 466778888888877665433333 34
Q ss_pred HHHH-HHHHHHHhHhhc---cc--------------------------------------chhcHhhhHHHHHHHhcCCC
Q 009182 90 QSAA-HLLDRLVKDIVT---ES--------------------------------------DQFSIEEFIPLLRERMNVLN 127 (541)
Q Consensus 90 R~~A-~~L~~l~kdi~~---e~--------------------------------------~~~~l~~~iP~L~e~l~d~~ 127 (541)
|+-- +...|+. ++. .+ ....++.++..|.+.++|.+
T Consensus 277 rKllvKl~QRiG--lv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~d 354 (1133)
T KOG1943|consen 277 RKLLVKLVQRIG--LVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTD 354 (1133)
T ss_pred HHHHHHHHHHhh--heecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCc
Confidence 3333 2222220 010 00 01356788999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhh-chHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHh
Q 009182 128 PYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQR 204 (541)
Q Consensus 128 ~~vR~~a~~~l~~L~~~~~~~l~~-~lp~~L~~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~ 204 (541)
..||=.++..++.+.+..+.++.. .+.++++ +++-. +...=-.+|-+|+++... |- --++ ++.++|.+++.
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid----~~~p~e~~~aWHgacLaLAELA~r-Gl-Llps~l~dVvplI~ka 428 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVID----LFNPAEDDSAWHGACLALAELALR-GL-LLPSLLEDVVPLILKA 428 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHH----hcCcCCchhHHHHHHHHHHHHHhc-CC-cchHHHHHHHHHHHHH
Confidence 999999999999999887765543 3344444 33322 234455777888877532 10 0122 57899999886
Q ss_pred cCC--------CCHHHHHHHHHHHHHHHhh-cCcCcccchhhHHHHHhh-hcCCCChhHHHHHHHHHHHHHHhhcCCCC-
Q 009182 205 AAS--------PDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILP-CISDKEEKIRVVARETNEELRAIKADPAD- 273 (541)
Q Consensus 205 ~~~--------~~~~vr~~al~wL~~l~~~-~~~~l~p~l~~llp~ll~-~l~d~~~~iR~~A~~~~~~L~~~i~~~~~- 273 (541)
+.- ....||..|++..=.|... .+.++-||+.++.+.++- .+=|.+-+.|.+|..+..+. ++..++
T Consensus 429 L~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~---VGR~~n~ 505 (1133)
T KOG1943|consen 429 LHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQEN---VGRQGNF 505 (1133)
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH---hccCCCC
Confidence 542 3467999998765566664 466788999999987776 56678889998887776544 433111
Q ss_pred ------------------------------CCC--hHhHHHHH-HHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 009182 274 ------------------------------GFD--VGPILSIA-TRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (541)
Q Consensus 274 ------------------------------~~~--l~~il~~L-~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~ 320 (541)
.++ .+.+++.+ ++.+.+.+..+|+.+...|..|+...|+.+.. .
T Consensus 506 p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~---~ 582 (1133)
T KOG1943|consen 506 PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD---Y 582 (1133)
T ss_pred CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc---c
Confidence 001 13444433 33367788889999999999999999988753 4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 321 IFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 321 l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
.+|-+++...-++.+.|+...-+.+++.
T Consensus 583 ~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 583 VLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred chhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 6666676666677888887777777766
No 73
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.019 Score=64.43 Aligned_cols=183 Identities=15% Similarity=0.181 Sum_probs=122.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHH
Q 009182 41 FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLL 119 (541)
Q Consensus 41 l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L 119 (541)
+.+++.+.|.-|...+-. ....|+- +..+|+-+.|.++..|.++|+-- .-+-+..|. ...-.-.-++.+
T Consensus 28 l~s~n~~~kidAmK~iIa--~M~~G~d---mssLf~dViK~~~trd~ElKrL~ylYl~~yak~-----~P~~~lLavNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIA--QMSLGED---MSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-----KPELALLAVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHH--HHhcCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHH
Confidence 667777778776654332 2223333 56888888888888888888866 323332221 111122337778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHH-HH
Q 009182 120 RERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR-MA 198 (541)
Q Consensus 120 ~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~-ii 198 (541)
..=++|+||.+|-+++..++.+. . -..++.+++.+.+.++|+++.||+.|.-|+..+-+ -..+...+. .+
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~---~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~ 168 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLR---V---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLI 168 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcC---h---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHH
Confidence 88889999999999998887532 2 25567778889999999999999999888777653 111112233 66
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhh
Q 009182 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 245 (541)
Q Consensus 199 ~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~ 245 (541)
..+.....|++|.|..+|+..+.++. ++...+|...+.-.+-+.
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~---~e~a~~~~~~~~~~i~~l 212 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEID---PELAHGYSLEVILRIPQL 212 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhc---hhhhhhHHHHHHHHhhhc
Confidence 67777788999999999988776553 335566666555555443
No 74
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.026 Score=63.87 Aligned_cols=315 Identities=16% Similarity=0.195 Sum_probs=171.0
Q ss_pred HHHHHhhhhhhcchhhhhcchhHHH---HhhcCCCC---------HHHHH------------HHHHH-HHHHHHHhchhh
Q 009182 13 VEQFLLYADLFFYSETILQQIVPPV---LNSFSDQD---------SRVRY------------YACEA-LYNIAKVVRGDF 67 (541)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~ii~~v---l~~l~D~d---------~~VR~------------~A~ea-L~~i~k~~~~~~ 67 (541)
.|+|..-+.-....+++++.|+.-+ +-|++|.| .-+|. +|+.. +..+++--+++.
T Consensus 328 l~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~ 407 (1010)
T KOG1991|consen 328 LEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET 407 (1010)
T ss_pred HHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh
Confidence 4667666666777788888888544 34666554 34554 23333 444443322333
Q ss_pred h-hHHHHHHHHHHHhhc----CCCHHHHHHH-HHHHHHHhHhhcccch--hcH-hhhHHHHHHHhcCCCHHHHHHHHHHH
Q 009182 68 I-IFFNQIFDALCKLSA----DSDANVQSAA-HLLDRLVKDIVTESDQ--FSI-EEFIPLLRERMNVLNPYVRQFLVGWI 138 (541)
Q Consensus 68 ~-~~~~~i~~~L~kl~~----D~d~~VR~~A-~~L~~l~kdi~~e~~~--~~l-~~~iP~L~e~l~d~~~~vR~~a~~~l 138 (541)
+ ..+.-+.+.+.+.-+ ..++.-+.|| ..++.++ +++.+... .-+ ..+++.++-.++++--+.|.-+|-.+
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~-~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA-SILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH-HHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence 2 222233333433222 2344556788 6777777 45543211 011 22344444556677778999999999
Q ss_pred HHhhcCCCchhhhchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCC---CCCChHHHHHHHHHhcCCCCHHHHH
Q 009182 139 TVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAASPDEFTRL 214 (541)
Q Consensus 139 ~~L~~~~~~~l~~~lp~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i~~~---~~~~~~~ii~~Ll~~~~~~~~~vr~ 214 (541)
+.++++-=.+- ..+-..+....+.|. |+.-.||..|+-+|..|+...... ..+++++++..+++..+.-+-+.-.
T Consensus 487 ~~~~~~df~d~-~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 487 SQFSSIDFKDP-NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHHHhccCCCh-HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH
Confidence 99986532211 445566777777777 888999999999999999766533 2356777777777777665544333
Q ss_pred HHHHHHHHHHhhcCcCcccchhhHHH----HHhhhcCC---CC---hhHHHHHHHHHHHHHHhhcCCCCCC----Ch-Hh
Q 009182 215 TAITWINEFVKLGGDQLVPYYADILG----AILPCISD---KE---EKIRVVARETNEELRAIKADPADGF----DV-GP 279 (541)
Q Consensus 215 ~al~wL~~l~~~~~~~l~p~l~~llp----~ll~~l~d---~~---~~iR~~A~~~~~~L~~~i~~~~~~~----~l-~~ 279 (541)
.+ +..++.-.++.+.||-+++.. ..++++.+ .+ .+..-+|..++.++-.++.+-.+.. .+ +.
T Consensus 566 ~v---me~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~ 642 (1010)
T KOG1991|consen 566 NV---MEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPI 642 (1010)
T ss_pred HH---HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33 344455566777788766654 45555553 11 2222233333333322222111111 11 34
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC
Q 009182 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (541)
Q Consensus 280 il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~ 333 (541)
++|++...+++...+.-+.++....-+.-. ..++.|.+=+++|-+++++.|+.
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~-~~~Isp~mW~ll~li~e~~~~~~ 695 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFL-SKEISPIMWGLLELILEVFQDDG 695 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhh-hcccCHHHHHHHHHHHHHHhhhh
Confidence 456666666555444444444333222211 23344445556666666655543
No 75
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.012 Score=64.24 Aligned_cols=190 Identities=21% Similarity=0.249 Sum_probs=124.5
Q ss_pred HHHHHHHHhhhhhhcch-------hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh-hhHHHHHHHHHHHh
Q 009182 10 EIIVEQFLLYADLFFYS-------ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKL 81 (541)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-------~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~-~~~~~~i~~~L~kl 81 (541)
++|++|....+..+... ...+..+...+++....+|..||+-.|.-+..+.... +++ ...|+.+...+.+-
T Consensus 56 esi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~R 134 (892)
T KOG2025|consen 56 ESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIR 134 (892)
T ss_pred CCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHH
Confidence 46777776665554432 2345667777899999999999999998877666422 222 24467788888888
Q ss_pred hcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHH
Q 009182 82 SADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG 159 (541)
Q Consensus 82 ~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l-~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~ 159 (541)
+-|.+++||-.| .+|.++-.+=. + +.+.+ ...+...+ +|++++||..+++.|..=++. +| .
T Consensus 135 l~Drep~VRiqAv~aLsrlQ~d~~-d-ee~~v---~n~l~~liqnDpS~EVRRaaLsnI~vdnsT--------lp----~ 197 (892)
T KOG2025|consen 135 LKDREPNVRIQAVLALSRLQGDPK-D-EECPV---VNLLKDLIQNDPSDEVRRAALSNISVDNST--------LP----C 197 (892)
T ss_pred HhccCchHHHHHHHHHHHHhcCCC-C-CcccH---HHHHHHHHhcCCcHHHHHHHHHhhccCccc--------ch----h
Confidence 999999999999 88777643111 1 22222 44444444 589999999999888642222 33 3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHH-----HHHHH
Q 009182 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTA-----ITWIN 221 (541)
Q Consensus 160 L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~a-----l~wL~ 221 (541)
+..-..|.+..+|+.+-+- +++.+. .....++.-+-.+-..+.|.+..|+.++ -.|+.
T Consensus 198 IveRarDV~~anRrlvY~r---~lpkid-~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~ 260 (892)
T KOG2025|consen 198 IVERARDVSGANRRLVYER---CLPKID-LRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLR 260 (892)
T ss_pred HHHHhhhhhHHHHHHHHHH---hhhhhh-hhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh
Confidence 4448889998898877433 444442 1123456666667777788777776554 24765
No 76
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.95 E-value=6.2e-05 Score=83.46 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhhhhh--------hcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-hhhhhHHHHHH
Q 009182 5 YSFLFEIIVEQFLLYADL--------FFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIF 75 (541)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~-~~~~~~~~~i~ 75 (541)
.+-+||+|+--+-...+- +.+ ..+...|+|.+.+.+.-....+|.-=.++|.++.+... ..+.+.++.++
T Consensus 833 aa~~fsiim~D~~~~~~r~~~a~~riLyk-QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~Ll 911 (1030)
T KOG1967|consen 833 AAKLFSIIMSDSNPLLKRKGHAEPRILYK-QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLL 911 (1030)
T ss_pred HHHhhHhhhccChHHhhhccccchhHHHH-HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHH
Confidence 456788877655333221 222 56777899999999986666777777778888887764 45569999999
Q ss_pred HHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCC---HHHHHHHHHHHHHhhc-CCCchhh
Q 009182 76 DALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLN---PYVRQFLVGWITVLDS-VPDIDML 150 (541)
Q Consensus 76 ~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~---~~vR~~a~~~l~~L~~-~~~~~l~ 150 (541)
|.|.+.++=||..||-.+ ..+.-+++...+ -....++.++|.+...-.+.+ -.||..++++++.+.. .|...+.
T Consensus 912 PLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~ 990 (1030)
T KOG1967|consen 912 PLLLQALSMPDVIVRVSTLRTIPMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL 990 (1030)
T ss_pred HHHHHhcCCCccchhhhHhhhhhHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc
Confidence 999999999999999887 554444432221 123568899999999888865 5799999999999999 7888899
Q ss_pred hchHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009182 151 GFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (541)
Q Consensus 151 ~~lp~~L~~L~~lL~D~~~eVR~~a~~~ 178 (541)
+|-|..+.+|.+.|.|+.+-||++|..+
T Consensus 991 ~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 991 SFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 9999999999999999999999999766
No 77
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.92 E-value=4.2e-05 Score=70.38 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=86.7
Q ss_pred CChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhChHHHh-----------------------------hhhHHHHH-
Q 009182 275 FDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVL-----------------------------HFLNDIFD- 323 (541)
Q Consensus 275 ~~l~~il~~L~~~L~~~-~~~~R~aal~wL~~L~~~~~~~i~-----------------------------~~l~~l~p- 323 (541)
.+++++++.|.+.++.+ ++..|.++++.+|.++..+|-... +..++++|
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPT 85 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHH
Confidence 46899999999999654 688999999999999998872211 23445544
Q ss_pred ----HHHHhcCCCCHHHHH-HHHHHHHHHh-----cchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccC
Q 009182 324 ----TLLKALSDPSDEVVL-LVLEVHACIA-----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (541)
Q Consensus 324 ----~Ll~~L~D~~~~V~~-~~~~~L~~i~-----~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l 387 (541)
+|++.|+|++-...+ .+.+++..|. ++.+|++++++.+++.+++... .+-+++++|||.++
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~---~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD---SLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH---HHHHHHHHHHHHHH
Confidence 889999999865555 6778888777 4689999999999999997776 45688999998764
No 78
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0016 Score=71.64 Aligned_cols=244 Identities=20% Similarity=0.245 Sum_probs=134.5
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
-..+.|.|-+.++.+++-||+-|+.+.+.+..... +...+ ..+..-+++.|.+..|=-++ ..+-.+|+.-.....
T Consensus 140 ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~---f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 140 ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEH---FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHH---hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 34566888889999999999999999888775432 22222 24555567888888888777 556666662111000
Q ss_pred --hhcHhhhHHHHHHHhc-----------CCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHH------------
Q 009182 109 --QFSIEEFIPLLRERMN-----------VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM------------ 163 (541)
Q Consensus 109 --~~~l~~~iP~L~e~l~-----------d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~l------------ 163 (541)
..-++.|+..|.+... -.+|+..--++..++.+... +.+....+.++|..++.-
T Consensus 216 ~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 216 YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccccccchhHHH
Confidence 1123444544444442 24566666666666655443 334445555555544420
Q ss_pred -------c-CCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch
Q 009182 164 -------L-SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (541)
Q Consensus 164 -------L-~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l 235 (541)
+ -+++...|..|.++|++|+ .++|-.+|..++..+...++..+.....|
T Consensus 295 YE~V~TI~~I~~~~~LrvlainiLgkFL----------------------~n~d~NirYvaLn~L~r~V~~d~~avqrH- 351 (866)
T KOG1062|consen 295 YECVRTIMDIRSNSGLRVLAINILGKFL----------------------LNRDNNIRYVALNMLLRVVQQDPTAVQRH- 351 (866)
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHh----------------------cCCccceeeeehhhHHhhhcCCcHHHHHH-
Confidence 0 1233444555555555554 23334444444444444444444333222
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh
Q 009182 236 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (541)
Q Consensus 236 ~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~ 311 (541)
=..|+.|+.|+++.||..|.+..-.+ +.+ -++..++..+.+.|...+...|.....-+..++++..
T Consensus 352 ---r~tIleCL~DpD~SIkrralELs~~l---vn~----~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfa 417 (866)
T KOG1062|consen 352 ---RSTILECLKDPDVSIKRRALELSYAL---VNE----SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFA 417 (866)
T ss_pred ---HHHHHHHhcCCcHHHHHHHHHHHHHH---hcc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 23456677777777775554433322 322 2456666666666655566666666666666666653
No 79
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.91 E-value=0.00055 Score=77.47 Aligned_cols=191 Identities=13% Similarity=0.122 Sum_probs=152.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~ 151 (541)
.+-+.+...+.|++---|+.| +.+-..++.-..+......+.+-..+.-+..|.|-.|-..+...+..++...+..+..
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 344455567888888777777 6665555432212223345666777777888999999999999999999998888889
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc-C
Q 009182 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-Q 230 (541)
Q Consensus 152 ~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~-~ 230 (541)
|.-..++.++..+.|....+|..+..+++..+.. .....+.+.++..+.+.++.+|..+..|+.......+. .
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 9999999999999999999999999998888752 45899999999999999999999999999977665442 2
Q ss_pred -cccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc
Q 009182 231 -LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (541)
Q Consensus 231 -l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~ 269 (541)
..+-..++.|.+.....|.+.+||.+|.++.+.+++.++
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 223356889999999999999999999999888876554
No 80
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.90 E-value=7e-05 Score=64.37 Aligned_cols=110 Identities=24% Similarity=0.198 Sum_probs=83.9
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhc
Q 009182 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (541)
Q Consensus 74 i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~ 152 (541)
+++.+.+.+.|++.++|.+| .++..+++........+.-..++|.+.+.+.+.++.+|..++..++++....+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 57778888899999999999 88888776321111112123779999999999999999999999999988765332222
Q ss_pred h-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 153 L-PDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 153 l-p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
. ..+++.+.+.+.+.+.++|+.++.++..+.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 346788888999999999999999888764
No 81
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0023 Score=67.98 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchh
Q 009182 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l 149 (541)
+.+.-|-|...++|.-..|.-.+ .++.++....+ +...++..+..|..++...+...|-.|+..+++++...|...
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv---~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV---GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 34455556667777766665444 55555443332 234577778999999999999999999999999998877665
Q ss_pred hhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCH
Q 009182 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE 210 (541)
Q Consensus 150 ~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~ 210 (541)
...-+++=. +.+|.++.+-.-| +..+++. ..+-.++.+++.+...+.|-..
T Consensus 339 ~vcN~evEs----LIsd~Nr~IstyA---ITtLLKT---Gt~e~idrLv~~I~sfvhD~SD 389 (898)
T COG5240 339 SVCNKEVES----LISDENRTISTYA---ITTLLKT---GTEETIDRLVNLIPSFVHDMSD 389 (898)
T ss_pred eecChhHHH----HhhcccccchHHH---HHHHHHc---CchhhHHHHHHHHHHHHHhhcc
Confidence 555555444 7889888877766 4445542 2233467777766666655443
No 82
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.011 Score=66.10 Aligned_cols=298 Identities=15% Similarity=0.178 Sum_probs=161.0
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHH---hHhhcccc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV---KDIVTESD 108 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~---kdi~~e~~ 108 (541)
.++.+..-++|+++.+|..|...+..+- -+++ +..+++.+-+++.|+++-||+.| -++.++. ++...+.|
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~---~~el---~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g 166 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLR---VKEL---LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG 166 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcC---hHHH---HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc
Confidence 3488899999999999999887766442 1233 46779999999999999999999 6665544 33333322
Q ss_pred hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHc---CCC-CHHHHHHHHHHHHHHHH
Q 009182 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML---SDS-SHEIRQQADSALWEFLQ 184 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL---~D~-~~eVR~~a~~~L~~ll~ 184 (541)
.+-.+.+.+.|.+|.|...|+..+..+..-. ...|.-.+...+-++. .+. .+.++..- ++.+..
T Consensus 167 ------~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~---a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~---le~L~~ 234 (757)
T COG5096 167 ------LIDILKELVADSDPIVIANALASLAEIDPEL---AHGYSLEVILRIPQLDLLSLSVSTEWLLLII---LEVLTE 234 (757)
T ss_pred ------HHHHHHHHhhCCCchHHHHHHHHHHHhchhh---hhhHHHHHHHHhhhccchhhhhhHHHHHHHH---HHHHHc
Confidence 4778889999999999999999988876552 2233333222222211 111 13333322 333333
Q ss_pred HhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 185 ~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
-....++ ....+...+....++.++.+-..++.-+-.+....+..- +.-...|.+...+...++.+...+...+...
T Consensus 235 ~~~~~~~-s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~--~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~ 311 (757)
T COG5096 235 RVPTTPD-SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNN--LFLISSPPLVTLLAKPESLIQYVLRRNIQID 311 (757)
T ss_pred cCCCCCC-cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhcccc--HHHhhccHHHHHHcCCHHHHHHHHHHhhHHH
Confidence 2222222 344455555556667788887777765555544333222 3444555555555544333333333322222
Q ss_pred HHhhcCCCCCCChHhHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC--CCHHHHHH
Q 009182 265 RAIKADPADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLL 339 (541)
Q Consensus 265 ~~~i~~~~~~~~l~~il~~L~~~L~---~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D--~~~~V~~~ 339 (541)
.+. .+..+....+.+. .++.....+-+.....+.. .+. ..++++.+....++ .++++++.
T Consensus 312 l~~---------~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~--~~n----~~~~L~e~~~y~~~~~~~~e~v~~ 376 (757)
T COG5096 312 LEV---------CSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLAD--DQN----LSQILLELIYYIAENHIDAEMVSE 376 (757)
T ss_pred HHh---------hHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCC--chh----hHHHHHHHHHHHhhccccHHHHHH
Confidence 111 0122222222221 1112222222222211111 111 12255555555555 67788888
Q ss_pred HHHHHHHHhc-chhhHHHHHHHHHHhcc
Q 009182 340 VLEVHACIAK-DLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 340 ~~~~L~~i~~-~~~~f~~~m~~LL~~~~ 366 (541)
++++++.+.. .+..-..++..+++.++
T Consensus 377 ~ik~lgd~~sk~~s~~~~~I~~~lel~~ 404 (757)
T COG5096 377 AIKALGDLASKAESSVNDCISELLELLE 404 (757)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhcc
Confidence 8888888773 23334557777777766
No 83
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.034 Score=58.59 Aligned_cols=239 Identities=15% Similarity=0.080 Sum_probs=153.0
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcC
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
-.+..++-.+.++..|++..+|..++..+++.++-.+.....|-+..++++..-|-| .+.+|.-++..+|...++....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 346677778888889999999999999999999998888999999999999977766 4788999999998888765542
Q ss_pred CC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc-cchhhHHHHH---hhhcCCCChhHHHHHHHHHHH
Q 009182 189 SP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAI---LPCISDKEEKIRVVARETNEE 263 (541)
Q Consensus 189 ~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~-p~l~~llp~l---l~~l~d~~~~iR~~A~~~~~~ 263 (541)
.. ..++-++.-.+.+...+.++..|.+|++..+.++.+.|..-. -|..++.... +--+.|++|.+-.++......
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT 413 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh
Confidence 11 122334444455567788999999999999999888653322 2455555333 334567777654333222111
Q ss_pred ---------HHHhhc---CCC--------CCC--Ch----HhHHHHHHH---hcCCCCH-HHHHHHHHHHHHHHhhChHH
Q 009182 264 ---------LRAIKA---DPA--------DGF--DV----GPILSIATR---QLSSEWE-ATRIEALHWISTLLNRHRTE 313 (541)
Q Consensus 264 ---------L~~~i~---~~~--------~~~--~l----~~il~~L~~---~L~~~~~-~~R~aal~wL~~L~~~~~~~ 313 (541)
+...+. +.. +.| .+ ++++-.+.. .+.+..| .+|.++...-..+.......
T Consensus 414 c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~ 493 (533)
T KOG2032|consen 414 CYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRA 493 (533)
T ss_pred cCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHH
Confidence 111111 000 000 01 122222211 1234566 47888877666666655555
Q ss_pred Hhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 314 VLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 314 i~~~l--~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
.-++. ..+...+-....||-|+|+..+.+++...+
T Consensus 494 ~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 494 ACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 44433 345556666677999999998888887654
No 84
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.83 E-value=0.0011 Score=62.31 Aligned_cols=111 Identities=21% Similarity=0.153 Sum_probs=89.7
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc
Q 009182 250 EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 329 (541)
Q Consensus 250 ~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L 329 (541)
+|.||..+..+.+.+.....+ -.++.+|.+...|.+++..+|..|+..+..|.....-++ -+.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence 477898888888887644322 146788899999999999999999999999988754444 456678888999
Q ss_pred CCCCHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhcccc
Q 009182 330 SDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVD 368 (541)
Q Consensus 330 ~D~~~~V~~~~~~~L~~i~~--~~~~f~~~m~~LL~~~~~~ 368 (541)
.|++++||..|...+.++.. +++-|...++.++..+.+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 99999999999999999994 4777888888888888654
No 85
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.011 Score=64.47 Aligned_cols=206 Identities=17% Similarity=0.107 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch
Q 009182 70 FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (541)
Q Consensus 70 ~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~ 148 (541)
..+.+|--+.+....++..||.-. ..+..+...++ +-++..-+.+...+..+++|..|.||.-|+-++..+...++.+
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 345677788889999999999998 66666655332 2234456788999999999999999999999999998777664
Q ss_pred hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHhhc
Q 009182 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITW-INEFVKLG 227 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~w-L~~l~~~~ 227 (541)
-.+....+.. -+=.||++|||++|..++. . -++-.|.++++++|.+..+|..+-.- +..+ ...
T Consensus 161 e~~v~n~l~~---liqnDpS~EVRRaaLsnI~------v------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r 224 (892)
T KOG2025|consen 161 ECPVVNLLKD---LIQNDPSDEVRRAALSNIS------V------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DLR 224 (892)
T ss_pred cccHHHHHHH---HHhcCCcHHHHHHHHHhhc------c------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhh
Confidence 3343333333 1227999999999844421 1 23457899999999999888776532 2221 111
Q ss_pred CcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHH-HHHhhcCCCCCCChHhHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 009182 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEE-LRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWIST 305 (541)
Q Consensus 228 ~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~-L~~~i~~~~~~~~l~~il~~L~~~L~~~-~~~~R~aal~wL~~ 305 (541)
. + -+.+-+..+-.++.|.+..+|.++.+..-. -.+.. +.=++.+.+.+.-+ +..++..++.++..
T Consensus 225 ~--l--si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~---------dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 225 S--L--SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS---------DGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred h--h--hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc---------cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 1 134566677778888888888777664322 11111 11233344555433 33677777766544
No 86
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.81 E-value=4.1e-05 Score=57.00 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009182 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (541)
Q Consensus 128 ~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~l 182 (541)
|.||..++..++.+....+..+.+++|.+++.|..+|.|++++||..|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999988888889999999999999999999999999999998753
No 87
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.77 E-value=2.8e-05 Score=50.72 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=26.8
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKV 62 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~ 62 (541)
|+|.++++++|++++||++|+.++.++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.70 E-value=0.00041 Score=56.56 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=68.4
Q ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchh
Q 009182 158 DGLFNML-SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (541)
Q Consensus 158 ~~L~~lL-~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~ 236 (541)
+.|++.+ +|+++.||..+..+++.+ .-+..+|.+...++|+++.||..|+.+++.+- -+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------DP 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CH
Confidence 5567778 899999999998887732 35678999999999999999999999998652 37
Q ss_pred hHHHHHhhhcCCC-ChhHHHHHHHHHH
Q 009182 237 DILGAILPCISDK-EEKIRVVARETNE 262 (541)
Q Consensus 237 ~llp~ll~~l~d~-~~~iR~~A~~~~~ 262 (541)
+.++.+.+.+.++ +..+|..|.++++
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 8889999988875 4567888877653
No 89
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.00061 Score=68.10 Aligned_cols=227 Identities=17% Similarity=0.151 Sum_probs=150.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHHhcCCC
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHE---IRQQADSALWEFLQEIKNSP 190 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D~~~e---VR~~a~~~L~~ll~~i~~~~ 190 (541)
+|.+.+.+.+.+.+||..++=++++++.-.+. +-.|+ -..++.++.++..+..+ +|.++ =.|..+++ |+.|
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~T-WtLSNlcR--GknP 234 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNAT-WTLSNLCR--GKNP 234 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhH-HHHHHhhC--CCCC
Confidence 89999999999999999999999988654321 22222 13356666666655443 35554 66777776 5666
Q ss_pred CCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch-hhHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 009182 191 SVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNEELRA 266 (541)
Q Consensus 191 ~~~---~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l-~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~ 266 (541)
.|+ +...+|+|-+.+.+.|+++-.-|+..|+.+...+.+....-+ ..+.+-++..++..+..|..-|.+..|.+
T Consensus 235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI-- 312 (526)
T COG5064 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI-- 312 (526)
T ss_pred CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe--
Confidence 665 678899999999999999998888888877655433221111 13344456666665544433232222221
Q ss_pred hhcCCCCC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcCCCCHHHHHHHHH
Q 009182 267 IKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLE 342 (541)
Q Consensus 267 ~i~~~~~~---~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~-~l~p~Ll~~L~D~~~~V~~~~~~ 342 (541)
+..++.. +--...++.+...|.++....|..+.-.+..+..+..+.+...++ .++|.|++.|+-.+-.++..+||
T Consensus 313 -VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACW 391 (526)
T COG5064 313 -VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391 (526)
T ss_pred -eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 2211110 001245677777788877788888887777777777666654443 58899999999888889999999
Q ss_pred HHHHHhc
Q 009182 343 VHACIAK 349 (541)
Q Consensus 343 ~L~~i~~ 349 (541)
+++...+
T Consensus 392 AisNats 398 (526)
T COG5064 392 AISNATS 398 (526)
T ss_pred HHHhhhc
Confidence 9998874
No 90
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.01 Score=62.43 Aligned_cols=267 Identities=16% Similarity=0.121 Sum_probs=159.8
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhc-CCCHHHHHHH-HHHHHHHhHhh
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIV 104 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~-D~d~~VR~~A-~~L~~l~kdi~ 104 (541)
...+..+.....+-..||+..+|..||..+.+.+..+..+...|-..+++++...+. |.+.+|.--| ..|..+..-..
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 455667777778888999999999999999999988777777888889999887664 4456777666 66665554232
Q ss_pred cccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchH-HHH---HHHHHHcCCCCHHHHHHHHHHHH
Q 009182 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP-DFL---DGLFNMLSDSSHEIRQQADSALW 180 (541)
Q Consensus 105 ~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp-~~L---~~L~~lL~D~~~eVR~~a~~~L~ 180 (541)
...-...+-.+.-.+...+.+++++.|..+....+.++...+.+--..+- ... ..+.--+.|+++.|-.++...+.
T Consensus 333 ~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 21101111122334566677899999999999999999887654322222 222 22334568999988776644333
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHH--HHHHHHHhhcCcCcccchhhHHHHHhh----hcCCCChhHH
Q 009182 181 EFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAI--TWINEFVKLGGDQLVPYYADILGAILP----CISDKEEKIR 254 (541)
Q Consensus 181 ~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al--~wL~~l~~~~~~~l~p~l~~llp~ll~----~l~d~~~~iR 254 (541)
..... ...+..-.++-+.. +.+-. |..+. .|-.++.. +.|.++-.++. .++.+-+.+|
T Consensus 413 ~c~p~------l~rke~~~~~q~~l-d~~~~-~~q~Fyn~~c~~L~~--------i~~d~l~~~~t~~~~~f~sswe~vr 476 (533)
T KOG2032|consen 413 TCYPN------LVRKELYHLFQESL-DTDMA-RFQAFYNQWCIQLNH--------IHPDILMLLLTEDQHIFSSSWEQVR 476 (533)
T ss_pred hcCch------hHHHHHHHHHhhhh-HHhHH-HHHHHHHHHHHHHhh--------hCHHHHHHHHHhchhheecchHHHH
Confidence 22111 11122222222222 22211 33333 35433333 44555544443 2333457888
Q ss_pred HHHHHHHHHHHHhhcC-CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 255 VVARETNEELRAIKAD-PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (541)
Q Consensus 255 ~~A~~~~~~L~~~i~~-~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~ 309 (541)
++|..--+.+...... -.+..+..++...+....+++-.+++.+|..+++.+..+
T Consensus 477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhhc
Confidence 8876544433222111 112245567777888888888889999999888877654
No 91
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.58 E-value=0.0024 Score=66.61 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=108.6
Q ss_pred hhhhcchhHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhh
Q 009182 27 ETILQQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D-~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~ 104 (541)
++|..+|+-.++..++| .+...|..|...|..+.+.-......+-...+..+.....|++.+|-..| +.+.+++-.+.
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 57788899999999999 78888888777777666543333333333444445556678887666666 66555544332
Q ss_pred cccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 105 ~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~-~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
. ...+..+.|.+.. .+...-..++..+..+.. +...++...+|++.|++++....++..||+.|.-||..++
T Consensus 404 P---~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 404 P---LQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred c---hhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 2 2233444444433 555666677777777665 5556788999999999999999999999999999999999
Q ss_pred HHhc
Q 009182 184 QEIK 187 (541)
Q Consensus 184 ~~i~ 187 (541)
..+|
T Consensus 477 ~~vG 480 (516)
T KOG2956|consen 477 NRVG 480 (516)
T ss_pred HHHh
Confidence 8887
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.58 E-value=0.022 Score=64.14 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=83.0
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHH-----hHhhccc
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV-----KDIVTES 107 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~-----kdi~~e~ 107 (541)
.+.....+..++.-.| .|.-.|.|++...+.+..-.=..+++.|.++++..+.++.-.+ ..|.++. |+-+.
T Consensus 252 ~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~-- 328 (708)
T PF05804_consen 252 LKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA-- 328 (708)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 3455566667777777 4455688888766544332335788889999988777777766 6665553 22222
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc--hhhh--chHHHHHHHHHHcCCCC
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLG--FLPDFLDGLFNMLSDSS 168 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~--~l~~--~lp~~L~~L~~lL~D~~ 168 (541)
-..++|.|...+..++...+..++..+.+++.-++. .++. .+|. |..++.|++
T Consensus 329 ----~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPk----Lv~LL~d~~ 385 (708)
T PF05804_consen 329 ----ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPK----LVELLKDPN 385 (708)
T ss_pred ----HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHH----HHHHhCCCc
Confidence 234699999999999999999999999998766543 2222 4444 444777653
No 93
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.19 Score=56.16 Aligned_cols=274 Identities=15% Similarity=0.185 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHhchhhhhHHHHHHHHHH-HhhcCCCHHHHH--HH-HHHHHHH-hHhhcc-----------cchhcH
Q 009182 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADSDANVQS--AA-HLLDRLV-KDIVTE-----------SDQFSI 112 (541)
Q Consensus 49 R~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~-kl~~D~d~~VR~--~A-~~L~~l~-kdi~~e-----------~~~~~l 112 (541)
|.+||+-+..+.+...+.+.+.+......+. +..+||..+-|+ .| ....++. |.-.+. ..+|-.
T Consensus 379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 6778888888888887666655555555544 356788776654 23 2222211 100000 123555
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc-hhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~-~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~ 191 (541)
+.++|-|...=..+.|-.|..++.-+..+-+..+. .++.++|. +...+.-++.-|-.-|+.++..++..-+.+..
T Consensus 459 ~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~----li~~L~a~s~vvhsYAA~aiEkil~vre~~~~ 534 (960)
T KOG1992|consen 459 NQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPR----LIRFLEAESRVVHSYAAIAIEKLLTVRENSNA 534 (960)
T ss_pred HHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHH----HHHhccCcchHHHHHHHHHHHhccccccCccc
Confidence 66677665533346788899999888888776665 34455555 44588888899999998999998765443110
Q ss_pred -----CChHH----HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC-----CChhHHHHH
Q 009182 192 -----VDYGR----MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-----KEEKIRVVA 257 (541)
Q Consensus 192 -----~~~~~----ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d-----~~~~iR~~A 257 (541)
.++.+ ++.-+.+....++..--...+..|-....+.++...||.|.+++.+-+.+.. ++|.--.--
T Consensus 535 ~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYL 614 (960)
T KOG1992|consen 535 KIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYL 614 (960)
T ss_pred cccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHH
Confidence 12222 2233333333332111111222233344456666777777777655544332 122211111
Q ss_pred HHHHHHHHHh-hcCCCCCC-Ch-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHH
Q 009182 258 RETNEELRAI-KADPADGF-DV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (541)
Q Consensus 258 ~~~~~~L~~~-i~~~~~~~-~l-~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll 326 (541)
-++.+.+.+. ...+.+.+ .+ .+++|++...|..+-.+.-=-+++.+..+.+.+.+.+-+....++|.++
T Consensus 615 FEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 615 FESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 1222222221 11111111 12 4677777777766555566667888888888877755444445555443
No 94
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.073 Score=57.06 Aligned_cols=360 Identities=15% Similarity=0.101 Sum_probs=187.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCC-CHHHHHHH-HHHHHHHhHhhcccchhcH
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSI 112 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~-d~~VR~~A-~~L~~l~kdi~~e~~~~~l 112 (541)
=.++..|+++|.-.|...-.++.++.+...+.+. .-..+. |=++.. +..||--| ..|-+.+. +.. +
T Consensus 68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm-~tssiM----kD~~~g~~~~~kp~AiRsL~~Vid----~~t---v 135 (898)
T COG5240 68 FAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLM-GTSSIM----KDLNGGVPDDVKPMAIRSLFSVID----GET---V 135 (898)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhH-HHHHHH----HhhccCCccccccHHHHHHHHhcC----cch---h
Confidence 4467788888888888776666666654422211 111222 212222 22455545 33333222 211 2
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCC------------CHHHHHHHHHHHH
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS------------SHEIRQQADSALW 180 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~------------~~eVR~~a~~~L~ 180 (541)
..+=..+...+-++.+.+|..++-.-+.+..+.....-.+..+.-+.+..+-.-| ++-.+-.| ++
T Consensus 136 ~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHa---lG 212 (898)
T COG5240 136 YDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHA---LG 212 (898)
T ss_pred hhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHH---HH
Confidence 2334445566667788888877766666555544333333333333222221111 11112222 22
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHH
Q 009182 181 EFLQEIKNSPSVDYGRMAEILVQRAASPDEF-TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARE 259 (541)
Q Consensus 181 ~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~-vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~ 259 (541)
-+-+ +++. | .-....++++...+..- -+.+-+..++...++..++ -.++.++.|.+-.++++.-.-+.-.+.+
T Consensus 213 lLyq-~kr~---d-kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n-~q~~~q~rpfL~~wls~k~emV~lE~Ar 286 (898)
T COG5240 213 LLYQ-SKRT---D-KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN-SQALLQLRPFLNSWLSDKFEMVFLEAAR 286 (898)
T ss_pred HHHH-Hhcc---c-HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhC-hHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 1211 1110 0 00122333333332200 0111111122222222111 1256788888888998865544333333
Q ss_pred HHHHH-HHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHH
Q 009182 260 TNEEL-RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL 338 (541)
Q Consensus 260 ~~~~L-~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~ 338 (541)
+.-.+ .+.+++ -.+++.+.+|.-.|.+....+|-+|++.+..++.+.|..+..-.++ +-...+|....+-.
T Consensus 287 ~v~~~~~~nv~~----~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e----vEsLIsd~Nr~Ist 358 (898)
T COG5240 287 AVCALSEENVGS----QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE----VESLISDENRTIST 358 (898)
T ss_pred HHHHHHHhccCH----HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh----HHHHhhcccccchH
Confidence 32222 122222 2478899999999999999999999999999999999887432222 22333455433322
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChh--hHHHHHHHHhcccCChHHHHHHHHHh
Q 009182 339 LVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE--RVYRELSTILEGEADLDFACTMVQAL 416 (541)
Q Consensus 339 ~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e--~i~~~l~~il~~~~d~~f~~~~v~~L 416 (541)
-+..+|-+= +.++..+..|..+...+++-..-...-+-..+|.||.+...+ .+...+.++|.++..++|-.-||..+
T Consensus 359 yAITtLLKT-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdai 437 (898)
T COG5240 359 YAITTLLKT-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAI 437 (898)
T ss_pred HHHHHHHHc-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 232222222 244555555555555554332222233455789999999884 67788899999999999999999988
Q ss_pred HHhhcCcH
Q 009182 417 NLILLTSS 424 (541)
Q Consensus 417 ~~il~t~~ 424 (541)
.-+.---|
T Consensus 438 sd~~~~~p 445 (898)
T COG5240 438 SDAMENDP 445 (898)
T ss_pred HHHHhhCc
Confidence 77765554
No 95
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0065 Score=67.52 Aligned_cols=219 Identities=15% Similarity=0.094 Sum_probs=153.8
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 009182 122 RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEIL 201 (541)
Q Consensus 122 ~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~L 201 (541)
-++|+.+.+|.+++.-+..+.......-......++.....++.|.++-|--.|.+.+..+++. +-++|+|-+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 3467778889999888888877544443445556677777899999998888888877777643 346677777
Q ss_pred HHhc----CCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCh
Q 009182 202 VQRA----ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 277 (541)
Q Consensus 202 l~~~----~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l 277 (541)
.+.- +......|...-+.+..++..-|+-+..|...++...+.+..|++.+-|-.+..+.|.+++......+. .+
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HH
Confidence 6632 222234455455777778888888888999999999999999887777888888888887664422112 24
Q ss_pred HhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhChHHHhhhhH----HHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 009182 278 GPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLN----DIFDTLLKALSDP-SDEVVLLVLEVHACIA 348 (541)
Q Consensus 278 ~~il~~L~~~L-~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~----~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~ 348 (541)
.+++.-+.... .+....+|.+|.+.+..+..+.+.++.|.+. +....+.+...+. ++.++..++..+.+|-
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 44544444443 4677889999999999999999999988543 4444555555544 4455667777777665
No 96
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.48 E-value=0.42 Score=56.81 Aligned_cols=149 Identities=11% Similarity=0.147 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCH
Q 009182 214 LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWE 293 (541)
Q Consensus 214 ~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~ 293 (541)
.....|+-.+.... ..+..-+...+..|+..+..+...+|..|.+|...+ +..++.-.--+.+-..+...+.+...
T Consensus 794 ~~~a~li~~~la~~-r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~i---ve~Dp~vL~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHA-RSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMI---VEADPSVLSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred chhHHHHHHHHHhh-hHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHH---HhcChHhhcCHHHHHHHHHhhccchh
Confidence 34455555433222 223344677788888888888899998888887766 44443333346677788888999999
Q ss_pred HHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhHHHH---HHHHHHhccccch
Q 009182 294 ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQL---VVFLVHNFRVDNS 370 (541)
Q Consensus 294 ~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f~~~---m~~LL~~~~~~~~ 370 (541)
.+|+||+..+|...-..|+-+ ++++..+.....|+.-.||..+++.+..|+...+.|..+ ...++.+..+++.
T Consensus 870 sVREAaldLvGrfvl~~~e~~----~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELI----FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHH----HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchh
Confidence 999999999998887777665 456667788889999999999999999999777777664 5555555556654
No 97
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.44 E-value=0.19 Score=59.49 Aligned_cols=281 Identities=12% Similarity=0.166 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchh
Q 009182 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l 149 (541)
|...+.-+...+..+...+|.-| .+|+.+... . +.-..-+.+--.+..++.|....||.+|+..+|.+.-..+
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~--D-p~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--- 887 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEA--D-PSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--- 887 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc--C-hHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH---
Confidence 34444555555667777777777 667666530 0 0001112334455667777777777777777776654443
Q ss_pred hhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh---HHHHHHHHHhcCCCCHHHHHHHHH-----HHH
Q 009182 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY---GRMAEILVQRAASPDEFTRLTAIT-----WIN 221 (541)
Q Consensus 150 ~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~---~~ii~~Ll~~~~~~~~~vr~~al~-----wL~ 221 (541)
.+.+.+.+.+..-..|+.-.||+.+.+.+.+.+.+. +++ ..+.-.++.+.+|.+..|+.-+.. |+.
T Consensus 888 -e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 888 -ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET-----PDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred -HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----CChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 345566666666777777777777777777777654 333 444455556666655545444332 443
Q ss_pred HHHhh-cCcCc------------------ccchhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhcCCCCCCChHhH
Q 009182 222 EFVKL-GGDQL------------------VPYYADILGAILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPI 280 (541)
Q Consensus 222 ~l~~~-~~~~l------------------~p~l~~llp~ll~~l~d--~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~i 280 (541)
..... ..... .-++++++..+++.-.- ....+.+.+.......++++... -...+
T Consensus 962 p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~c----l~~~i 1037 (1692)
T KOG1020|consen 962 PVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHC----LVEKI 1037 (1692)
T ss_pred CCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHH----HHHHH
Confidence 22110 00111 11222222222221000 00111111111111111110000 00111
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHHhhChHHHh-hhhHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhc-----ch
Q 009182 281 LSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPS--DEVVLLVLEVHACIAK-----DL 351 (541)
Q Consensus 281 l~~L~~~L-~~~~~~~R~aal~wL~~L~~~~~~~i~-~~l~~l~p~Ll~~L~D~~--~~V~~~~~~~L~~i~~-----~~ 351 (541)
..+-.... .+++.....+.+..|..++...|.-+. .|...+.|+|-.. ++.. ..+...++..+..... .+
T Consensus 1038 ~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~-~~t~~~~~fl~~vi~Ile~VlPlv~~~se 1116 (1692)
T KOG1020|consen 1038 SEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSK-ASTIEEAQFLYYVIQILECVLPLVANPSE 1116 (1692)
T ss_pred HhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhcc-ccchHHHHHHHHHHHHHHHHhhhhccchH
Confidence 11111112 233444566777788888888888887 7999999998655 3332 2333344455544441 35
Q ss_pred hhHHHHHHHHHHhcccc
Q 009182 352 QHFRQLVVFLVHNFRVD 368 (541)
Q Consensus 352 ~~f~~~m~~LL~~~~~~ 368 (541)
.++..+=+.|++++-..
T Consensus 1117 sfL~sLEe~L~~~i~k~ 1133 (1692)
T KOG1020|consen 1117 SFLASLEEDLLKRIVKM 1133 (1692)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 66677777777766433
No 98
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.42 E-value=0.0085 Score=62.60 Aligned_cols=194 Identities=14% Similarity=0.041 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCc-hhhhchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 009182 125 VLNPYVRQFLVGWITVLDSVPDI-DMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILV 202 (541)
Q Consensus 125 d~~~~vR~~a~~~l~~L~~~~~~-~l~~~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll 202 (541)
++..+-|..+++-|..+.--.+- ---.|+.++|..++..|+| .+...|+.|-+.|...++.=.....-+.+--|-..+
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 34566677777655443222211 1236889999999999999 566778889888888875432211112345566667
Q ss_pred HhcCCCCHHH-HHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHH
Q 009182 203 QRAASPDEFT-RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPIL 281 (541)
Q Consensus 203 ~~~~~~~~~v-r~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il 281 (541)
+...+.++++ |.++-..+..++.+.|..- +..+-|.|+. .+..+--++.+....+.+-+..+.=..-++.+.
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~---I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQC---IVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhH---HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 7777776655 5444445555666655432 3445555554 222222233444444433222110001247888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhCh-HHHhhhhHHHHHHH
Q 009182 282 SIATRQLSSEWEATRIEALHWISTLLNRHR-TEVLHFLNDIFDTL 325 (541)
Q Consensus 282 ~~L~~~L~~~~~~~R~aal~wL~~L~~~~~-~~i~~~l~~l~p~L 325 (541)
|.+.+...+.+..+|.+|..+|.+++...+ +.|.||+.++-..=
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk 495 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSK 495 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHH
Confidence 999999999999999999999999999988 99999988775543
No 99
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.14 Score=57.08 Aligned_cols=332 Identities=17% Similarity=0.188 Sum_probs=198.3
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HH---------------
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HL--------------- 95 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~--------------- 95 (541)
.|...++..+-.....+...-.++++-|++ ..+-..|+.++|.|++-++..|-++-+|. ..
T Consensus 88 ~ikslIv~lMl~s~~~iQ~qlseal~~Ig~---~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSd 164 (960)
T KOG1992|consen 88 QIKSLIVTLMLSSPFNIQKQLSEALSLIGK---RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSD 164 (960)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhc---cccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccH
Confidence 345556666666678888888999988773 45567799999999998888888777776 21
Q ss_pred ---------HHHHHh---Hhhc----------ccc-----------------------------hhcHhhhHHHHHHHhc
Q 009182 96 ---------LDRLVK---DIVT----------ESD-----------------------------QFSIEEFIPLLRERMN 124 (541)
Q Consensus 96 ---------L~~l~k---di~~----------e~~-----------------------------~~~l~~~iP~L~e~l~ 124 (541)
||++++ ++.. +.+ +..++.+++.+...+.
T Consensus 165 aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~ 244 (960)
T KOG1992|consen 165 ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLT 244 (960)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHh
Confidence 121111 1110 000 2356777888877776
Q ss_pred CCC-------------HHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHH--HHHHHHHHHHHHHhcCC
Q 009182 125 VLN-------------PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR--QQADSALWEFLQEIKNS 189 (541)
Q Consensus 125 d~~-------------~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR--~~a~~~L~~ll~~i~~~ 189 (541)
-.+ .++|..+|+.++......+.++.+++|+|......++.+.+++.| ..+++++.-+ ..+.+.
T Consensus 245 ~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FL-t~V~~r 323 (960)
T KOG1992|consen 245 YDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFL-TSVSRR 323 (960)
T ss_pred ccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-HHHHhh
Confidence 333 266889999999999999999999999999999999988877664 2333344322 222221
Q ss_pred CC-C---ChHHHH---------------------------HHHHHhcCCCCHHH-HHHHHHHHHHHHhhcCcCcccchhh
Q 009182 190 PS-V---DYGRMA---------------------------EILVQRAASPDEFT-RLTAITWINEFVKLGGDQLVPYYAD 237 (541)
Q Consensus 190 ~~-~---~~~~ii---------------------------~~Ll~~~~~~~~~v-r~~al~wL~~l~~~~~~~l~p~l~~ 237 (541)
++ . .-++++ +++-.-+.-+|-.. |..|+..++.++......+.+-+..
T Consensus 324 ~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~ 403 (960)
T KOG1992|consen 324 PHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS 403 (960)
T ss_pred hhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 11 0 112222 22222222223233 5678899999998887777666666
Q ss_pred HHHHHhh-hcCCCChh--HHHHHHHHHHHHHHh-------hcCCCCCCChHh-HHHHHHHhcCC----CCHHHHHHHHHH
Q 009182 238 ILGAILP-CISDKEEK--IRVVARETNEELRAI-------KADPADGFDVGP-ILSIATRQLSS----EWEATRIEALHW 302 (541)
Q Consensus 238 llp~ll~-~l~d~~~~--iR~~A~~~~~~L~~~-------i~~~~~~~~l~~-il~~L~~~L~~----~~~~~R~aal~w 302 (541)
.+..++. .++++..+ -++.|.-....+.-- +..+..-+|... +.......|.+ +....|.++++.
T Consensus 404 ~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy 483 (960)
T KOG1992|consen 404 EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKY 483 (960)
T ss_pred HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccce
Confidence 6666665 33333222 122332222222100 111111233322 22333444433 444568888887
Q ss_pred HHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---c-----------chhhHHHHHHHHHHhcccc
Q 009182 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA---K-----------DLQHFRQLVVFLVHNFRVD 368 (541)
Q Consensus 303 L~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~---~-----------~~~~f~~~m~~LL~~~~~~ 368 (541)
+.......+.. |+-.++|.+++-|.-++.-|..-+..++.++- + ..+|-...+.+|.+.++..
T Consensus 484 ~~~FR~ql~~~---~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p 560 (960)
T KOG1992|consen 484 IYTFRNQLGKE---HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP 560 (960)
T ss_pred eeeecccCChH---HHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC
Confidence 77766666554 56789999999999988888887777777765 1 1234455566666555544
Q ss_pred ch
Q 009182 369 NS 370 (541)
Q Consensus 369 ~~ 370 (541)
.+
T Consensus 561 ~~ 562 (960)
T KOG1992|consen 561 GK 562 (960)
T ss_pred cc
Confidence 33
No 100
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.34 E-value=0.0062 Score=60.35 Aligned_cols=176 Identities=19% Similarity=0.224 Sum_probs=118.0
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHh-hcC-CCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-SAD-SDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl-~~D-~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
.++.+...+.|+++.||..|..++.|++..... ......-++.+++. .++ .+..++.++ .+|..+. ++....
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en--~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt---v~~~~~ 129 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDEN--QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT---VTNDYH 129 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh--HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC---CCcchh
Confidence 668899999999999999999999998754321 11223345555553 344 367887777 6665542 222223
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc--hhhhchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~--~l~~~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i 186 (541)
.-+...+|.+...+...+..+|..++..+..++.-|.. +++.- ..+..+..++.. .+.++-..+...+..+.+.+
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~--q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA--QVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc--cchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 44666799999999999999999999999999887652 22221 234445556654 46888777777777777777
Q ss_pred cCCCC----C------------ChHHHHHHHHHhcCCCCHHHHHH
Q 009182 187 KNSPS----V------------DYGRMAEILVQRAASPDEFTRLT 215 (541)
Q Consensus 187 ~~~~~----~------------~~~~ii~~Ll~~~~~~~~~vr~~ 215 (541)
++... . +.+.+...+.....++|++||..
T Consensus 208 ~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 208 KKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred CcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 65421 0 13456666777777888888864
No 101
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.34 E-value=0.097 Score=59.04 Aligned_cols=307 Identities=16% Similarity=0.175 Sum_probs=156.6
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHH--hchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~--~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
..+++.+.++++..+..+...+...|.+++-. .+..+. -..+++.|.+++..++.++++.| ..|-++.-|--..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R- 365 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR- 365 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH-
Confidence 45888899999988888888887777776522 122222 13688999999998888888888 7665542110000
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-chhhhchHHHHHHHHHHcCC-CCHHHHHHHHHH-------
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSA------- 178 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~-~~l~~~lp~~L~~L~~lL~D-~~~eVR~~a~~~------- 178 (541)
....-..++|.|...+.+ +..|..++..+++++...+ ..+..+-+ -++.+.+++.. +++++..++...
T Consensus 366 ~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 011112348888888875 4567788888888765432 22322221 23334434322 333332221111
Q ss_pred ------------HHHH---------------HHHhcCCCCC---ChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhc
Q 009182 179 ------------LWEF---------------LQEIKNSPSV---DYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLG 227 (541)
Q Consensus 179 ------------L~~l---------------l~~i~~~~~~---~~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~~ 227 (541)
|..+ ++.+-....+ .+.+.+.-++..+..+ +++.. ++.++.++++.
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~---vE~LGiLaNL~ 519 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFV---VECLGILANLT 519 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHH---HHHHHHHHhcc
Confidence 1111 1111111101 1233333334444333 33333 33344444432
Q ss_pred --CcCcccchh--hHHHHHhhhcCCC--ChhHHHHHHHHHHHHHHhhcCCCCC--CChHhHHHHHHHhcCC--CCHHHHH
Q 009182 228 --GDQLVPYYA--DILGAILPCISDK--EEKIRVVARETNEELRAIKADPADG--FDVGPILSIATRQLSS--EWEATRI 297 (541)
Q Consensus 228 --~~~l~p~l~--~llp~ll~~l~d~--~~~iR~~A~~~~~~L~~~i~~~~~~--~~l~~il~~L~~~L~~--~~~~~R~ 297 (541)
+.+....+. .++|.+-+.+... ++++.-.+.-..|.+. .+...+ +--..+++.+.+.|.. ++.+.=.
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla---~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA---SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH---CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 212222222 4555555555442 3444444444444332 110000 0113566666666633 2333344
Q ss_pred HHHHHHHHHHhhCh--HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 009182 298 EALHWISTLLNRHR--TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (541)
Q Consensus 298 aal~wL~~L~~~~~--~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~ 350 (541)
..+..+..+..+.+ +.+... .++...++..+.|++++||..+=.+|.-|++.
T Consensus 597 Qil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 597 QILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 44445544444432 223322 45778999999999999999877777777743
No 102
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.33 E-value=0.45 Score=53.78 Aligned_cols=262 Identities=15% Similarity=0.078 Sum_probs=173.1
Q ss_pred hhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch---h-hhchHH
Q 009182 81 LSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID---M-LGFLPD 155 (541)
Q Consensus 81 l~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~---l-~~~lp~ 155 (541)
+.-|.-+-+|-+| .++...|+.-+.. --++.++..|.+...+.+.+|-..+++.+....+.-+.. + ....|.
T Consensus 499 l~~~~~~~~ki~a~~~~~~~~~~~vl~---~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~ 575 (1005)
T KOG2274|consen 499 LTMDVPPPVKISAVRAFCGYCKVKVLL---SLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPL 575 (1005)
T ss_pred hccCCCCchhHHHHHHHHhccCceecc---ccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHH
Confidence 4456666788877 6655555422211 123445555555556677888889999999888775432 1 134555
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhhcCcCc
Q 009182 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQL 231 (541)
Q Consensus 156 ~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~----~~vr~~al~wL~~l~~~~~~~l 231 (541)
+..-..+.-.|| -|-..+..++.++++. .....+.-...+|.++.-++.++ ......++..|..+.+..+..+
T Consensus 576 ~i~lF~k~s~DP--~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 576 TINLFLKYSEDP--QVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HHHHHHHhcCCc--hHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 555444566666 6777777788777763 22223445678888888777665 4556677888888888877664
Q ss_pred cc-chhhHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHh----hc--CCCCCCChHhHHHHHHHhcCCCC-HHHHHHHHHH
Q 009182 232 VP-YYADILGAILPCISDK-EEKIRVVARETNEELRAI----KA--DPADGFDVGPILSIATRQLSSEW-EATRIEALHW 302 (541)
Q Consensus 232 ~p-~l~~llp~ll~~l~d~-~~~iR~~A~~~~~~L~~~----i~--~~~~~~~l~~il~~L~~~L~~~~-~~~R~aal~w 302 (541)
.. +.....|.+.++.-++ +.+.-+.|.+|...+... +. .++.+.++.-++.++.+.|.-+. ..+-.-+-..
T Consensus 653 ~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~l 732 (1005)
T KOG2274|consen 653 PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPL 732 (1005)
T ss_pred cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHH
Confidence 32 4556778888887664 455666778887776432 11 12234557788888887775433 3345566678
Q ss_pred HHHHHhhChHHHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 009182 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIA 348 (541)
Q Consensus 303 L~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~ 348 (541)
+..|..+.+..+.|-+++++.++++.|... ...|...-.-+++.+.
T Consensus 733 V~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 733 VLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 889999999999999999999999888765 4667666666777765
No 103
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.067 Score=63.51 Aligned_cols=336 Identities=15% Similarity=0.134 Sum_probs=186.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhchhh---hhHHHHHHHHHHH---hhcCCC-HHHHHHHHHHHHHHhH-hhcccchhc
Q 009182 40 SFSDQDSRVRYYACEALYNIAKVVRGDF---IIFFNQIFDALCK---LSADSD-ANVQSAAHLLDRLVKD-IVTESDQFS 111 (541)
Q Consensus 40 ~l~D~d~~VR~~A~eaL~~i~k~~~~~~---~~~~~~i~~~L~k---l~~D~d-~~VR~~A~~L~~l~kd-i~~e~~~~~ 111 (541)
.|+++|..||-..+-++.+|-.++.++. ..++.+||..+.+ .+.|++ +.-.+-...|..+.+- .+-.-...+
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 4578999999999989999999886542 2466777777664 455664 3344444444333221 110001122
Q ss_pred HhhhHHHHHHHhcC----CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 112 IEEFIPLLRERMNV----LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 112 l~~~iP~L~e~l~d----~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
-+.+++-++..+.| ..+.---..+..++.+....+ ..=.++|+.+|.=+--+.++.+.+|+..-..++..+.
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d----~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a 213 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEED----TVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCA 213 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhh
Confidence 33445555555543 222222222222222222111 1112445555544444445555556555555655554
Q ss_pred CCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 009182 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (541)
Q Consensus 188 ~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~ 267 (541)
.....++.+.+.--+..-.+.-..++...-.-|-++-.+.++. +..++|.+-..+.....++|..|....|.+.
T Consensus 214 ~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l----l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~-- 287 (1266)
T KOG1525|consen 214 DNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL----LLAVIPQLEFELLSEQEEVRLKAVKLVGRMF-- 287 (1266)
T ss_pred hhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--
Confidence 3333445444433332222111112222223333444433332 3455566666666667888988888777663
Q ss_pred hcCCCCCC--ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHH-------------------------------H
Q 009182 268 KADPADGF--DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-------------------------------V 314 (541)
Q Consensus 268 i~~~~~~~--~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~-------------------------------i 314 (541)
...+..+ .++.+.......+.+...++|+++++.........|.. +
T Consensus 288 -~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v 366 (1266)
T KOG1525|consen 288 -SDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDV 366 (1266)
T ss_pred -hcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeeh
Confidence 3222212 26788899999999999999999998776555554410 1
Q ss_pred ----hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc------------hhhHHHHHHHHHHhccccchhhhhhHHH
Q 009182 315 ----LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD------------LQHFRQLVVFLVHNFRVDNSLLEKRGAL 378 (541)
Q Consensus 315 ----~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~------------~~~f~~~m~~LL~~~~~~~~ll~~r~~~ 378 (541)
..+.+.++..+...+.|....||..|+.-|+++.++ .+-|.-+=..||..+-.+. ++.| ..
T Consensus 367 ~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~--~~~r-~~ 443 (1266)
T KOG1525|consen 367 MKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYEND--LDDR-LL 443 (1266)
T ss_pred hHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhcc--ccHH-HH
Confidence 123334666777778899999999999988887631 2345656667777665443 3445 55
Q ss_pred HHHHhhccCCh
Q 009182 379 IIRRLCVLLDA 389 (541)
Q Consensus 379 iir~Lc~~l~~ 389 (541)
+-+-||..+-|
T Consensus 444 vE~il~~~L~P 454 (1266)
T KOG1525|consen 444 VERILAEYLVP 454 (1266)
T ss_pred HHHHHHHhhCC
Confidence 66677776665
No 104
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.01 Score=68.14 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=122.2
Q ss_pred hHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhh
Q 009182 194 YGRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIK 268 (541)
Q Consensus 194 ~~~ii~~Ll~~~~~----~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i 268 (541)
+..+.|++++.|+. ++|+++.+|--.++.|.-+..+ |...=+|.++..|.. +.|-||.-+.-+++.+.=.+
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 56788899998854 4799999998888887765443 667778888888884 67888855555555442111
Q ss_pred cCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 269 ~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
. .=+++.-+.+-.++++++..+|.+|+..+.+|.-+..-++. +.++.+-.++.||.++|+..|=....+++
T Consensus 993 p-----nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK----Gql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 P-----NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK----GQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred c-----cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc----ccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 0 01355567788889999999999999999999988876665 44566678999999999999986766666
Q ss_pred c---------------------chhhHHHHHHHHHHhccccch
Q 009182 349 K---------------------DLQHFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 349 ~---------------------~~~~f~~~m~~LL~~~~~~~~ 370 (541)
+ .++-|..+|+-|+..+++|++
T Consensus 1064 ~k~n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkder 1106 (1251)
T KOG0414|consen 1064 SKGNTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDER 1106 (1251)
T ss_pred hcccchhhhchHHHHhhccCcccchhhHHHHHHHHHHhccccc
Confidence 2 245688889999988887764
No 105
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.29 E-value=0.13 Score=56.09 Aligned_cols=297 Identities=15% Similarity=0.118 Sum_probs=149.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~ 151 (541)
+-+..+..+..- +..+|.-| ..+.+..+....-. +.-+..+..+..|++..||..++..+..++.-.+ .
T Consensus 23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~ 92 (556)
T PF05918_consen 23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----E 92 (556)
T ss_dssp HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----H
Confidence 455566665653 45566666 77888887555421 2237777888899999999999999998887654 5
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhcC
Q 009182 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA---SPDEFTRLTAITWINEFVKLGG 228 (541)
Q Consensus 152 ~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~---~~~~~vr~~al~wL~~l~~~~~ 228 (541)
+++.+.+.|.++|.-.++..+..+.++|..+++. |-...+..+..++. ..++.+|..++..|.+-..-.+
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~-------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ-------DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 7889999999999877778888888888888742 33334444444443 5678899999988864333223
Q ss_pred cCcccc----hhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC-CC-----CHHHHH
Q 009182 229 DQLVPY----YADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS-SE-----WEATRI 297 (541)
Q Consensus 229 ~~l~p~----l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~-~~-----~~~~R~ 297 (541)
.++... -.-++..+-+.|.| +..|.. ...+.+..+ +..+.....-...++++.+.++.. +. +.+.=.
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~-l~m~lL~~l-k~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Id 243 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFE-LFMSLLKSL-KIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESID 243 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHH-HHHHHHHTS-GG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHhC-ccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHH
Confidence 333221 12344556666766 222221 111111111 110000000113567777776652 21 112111
Q ss_pred HHHHHHHHHHhhChHHH--hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc------chhhHHHHHHHHHHhccccc
Q 009182 298 EALHWISTLLNRHRTEV--LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDN 369 (541)
Q Consensus 298 aal~wL~~L~~~~~~~i--~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~------~~~~f~~~m~~LL~~~~~~~ 369 (541)
.-+.++.+-.-....+. ..++.-+..-+++.++|=.++.+...++++++++. ..+.+..+...|+..+....
T Consensus 244 rli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~ 323 (556)
T PF05918_consen 244 RLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKK 323 (556)
T ss_dssp HHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----
T ss_pred HHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCC
Confidence 12222222111111111 12222333334445555455667788899999983 13455555566655554221
Q ss_pred -------hhhhhhHHHHHHHhhccCCh
Q 009182 370 -------SLLEKRGALIIRRLCVLLDA 389 (541)
Q Consensus 370 -------~ll~~r~~~iir~Lc~~l~~ 389 (541)
..+|+ .-+.+.+||.....
T Consensus 324 ~~~~l~fs~vEc-LL~afh~La~k~p~ 349 (556)
T PF05918_consen 324 TEPKLQFSYVEC-LLYAFHQLARKSPN 349 (556)
T ss_dssp ------HHHHHH-HHHHHHHHHTT-TH
T ss_pred CCCcccchHhhH-HHHHHHHHhhhCcc
Confidence 22332 35677777766553
No 106
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.44 Score=52.61 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=123.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc
Q 009182 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (541)
Q Consensus 155 ~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p 233 (541)
++-+.+|.+|+-+.+-||+.|...+=... -+ .++ +.+-.|.+.+.+.|+|+.|+.+|+.-|-|++.-.|...+|
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvF---Lk--YPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVF---LK--YPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHH---Hh--hhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 34456677888888888877655433332 21 122 5666777777888888888888887777777777776655
Q ss_pred chhhHHHHHhhhcCCCChh-------------------HHHH----------HHHHHHHHHHhhc---CC--CCC-CChH
Q 009182 234 YYADILGAILPCISDKEEK-------------------IRVV----------ARETNEELRAIKA---DP--ADG-FDVG 278 (541)
Q Consensus 234 ~l~~llp~ll~~l~d~~~~-------------------iR~~----------A~~~~~~L~~~i~---~~--~~~-~~l~ 278 (541)
+- |.+.+.|.++..+ .+.- .+.+..-+.+.+. .. ..+ .|-.
T Consensus 219 LA----P~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~ 294 (877)
T KOG1059|consen 219 LA----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS 294 (877)
T ss_pred cc----HHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH
Confidence 43 3444444443221 1100 0011111111111 00 011 1223
Q ss_pred hHHH----HHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhH
Q 009182 279 PILS----IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF 354 (541)
Q Consensus 279 ~il~----~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f 354 (541)
..+. .|-..+.+++...|.-++.+++.++..-|..+..|-+ .++++|.|.++.||..++.++..+.+ .+..
T Consensus 295 asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmVs-kkNl 369 (877)
T KOG1059|consen 295 ASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMVS-KKNL 369 (877)
T ss_pred HHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHhh-hhhH
Confidence 3333 3334445667778999999999999999988876643 46899999999999999999999984 5677
Q ss_pred HHHHHHHHHhcc
Q 009182 355 RQLVVFLVHNFR 366 (541)
Q Consensus 355 ~~~m~~LL~~~~ 366 (541)
..++..|+..+.
T Consensus 370 ~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 370 MEIVKTLMKHVE 381 (877)
T ss_pred HHHHHHHHHHHH
Confidence 888888888774
No 107
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.28 E-value=0.0064 Score=60.24 Aligned_cols=180 Identities=21% Similarity=0.211 Sum_probs=115.3
Q ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHHHHHh-chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 35 PPVLNSFS-DQDSRVRYYACEALYNIAKVV-RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 35 ~~vl~~l~-D~d~~VR~~A~eaL~~i~k~~-~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
+.++..|+ .+|+.++..|..++.+.+... ..++... -..++.+.+++.+|++.||..| .+++++.... + +...
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~--e-n~~~ 90 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVND--E-NQEQ 90 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh--h-hHHH
Confidence 55667776 568999999999999875321 1222211 1467778889999999999988 7777653211 1 2234
Q ss_pred HhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 112 IEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 112 l~~~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
+..+++.+.+.+-+ -|..+....+..+..+.-.... -..+...++.++.++...+..+|..+.+.|..+-.
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~----- 163 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE----- 163 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-----
Confidence 66778888876654 4789999999999888544322 12233344455568888888999888777666642
Q ss_pred CCCCh------HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhh
Q 009182 190 PSVDY------GRMAEILVQRAASP-DEFTRLTAITWINEFVKL 226 (541)
Q Consensus 190 ~~~~~------~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~ 226 (541)
.+++ .+....++...+.. +.++-..++.|...+.+.
T Consensus 164 -np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 -NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred -CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 1221 22334444444443 466677788887777554
No 108
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.23 E-value=0.59 Score=52.91 Aligned_cols=295 Identities=15% Similarity=0.181 Sum_probs=193.7
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc
Q 009182 154 PDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (541)
Q Consensus 154 p~~L~~L~~lL-~D~~~eVR~~a~~~L~~ll~~i~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l 231 (541)
..|+....+.+ .|..+-+|..|+.++...+ +... .+..+.++..+.+-..+...++--..++.+...+++.++.-
T Consensus 489 ~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~ 565 (1005)
T KOG2274|consen 489 QHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA 565 (1005)
T ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh
Confidence 34444433333 5777888988888777666 2211 22357788888888777777776666677777777655432
Q ss_pred ccchhhHHHHHhh-hcCC-CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC----HHHHHHHHHHHHH
Q 009182 232 VPYYADILGAILP-CISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW----EATRIEALHWIST 305 (541)
Q Consensus 232 ~p~l~~llp~ll~-~l~d-~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~----~~~R~aal~wL~~ 305 (541)
..--.+|.|.... .+++ ++|.+-..+..+...+.+....- +.--+..+|.+...++.++ ...--.|+..|..
T Consensus 566 as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~--g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLtt 643 (1005)
T KOG2274|consen 566 ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY--GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTT 643 (1005)
T ss_pred hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHH
Confidence 2223455555544 2334 35777777777777776533221 1122456777777775444 4456678889999
Q ss_pred HHhhChHHHhh-hhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhc----------chh--hHHHHHHHHHHhccccc--
Q 009182 306 LLNRHRTEVLH-FLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAK----------DLQ--HFRQLVVFLVHNFRVDN-- 369 (541)
Q Consensus 306 L~~~~~~~i~~-~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~~----------~~~--~f~~~m~~LL~~~~~~~-- 369 (541)
+.++.|..+.+ .....||++.++.-+. +.++-..+-++|+.+.+ +++ .|.-+|..+=+++..+.
T Consensus 644 vvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sd 723 (1005)
T KOG2274|consen 644 VLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSD 723 (1005)
T ss_pred HHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccch
Confidence 99999888643 5677899999986555 45677778888887652 121 25566666666664331
Q ss_pred ---hhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHHHHHHHhhccCCcchhH
Q 009182 370 ---SLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKD 444 (541)
Q Consensus 370 ---~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~~R~~L~~~~~~~~~~~ 444 (541)
-....-...+|-+.+.-+|+ .+|.++.-.-+...+.+.+.+.+|-++...-.|..+ .+=+-|-. +..+.+.+
T Consensus 724 s~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~--~~l~FL~S-lp~~~g~~ 800 (1005)
T KOG2274|consen 724 SAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLD--QLLNFLSS-LPGPTGEP 800 (1005)
T ss_pred hHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHH--HHHHHHHh-CCCCCCCc
Confidence 22233334478888888888 679999999999999999988888888877766553 33344443 45588889
Q ss_pred HHHHHHHhhccC
Q 009182 445 LFVSLYASWCHS 456 (541)
Q Consensus 445 lf~~l~~~w~~n 456 (541)
-|.=+-.-||-+
T Consensus 801 AlefVMteW~sr 812 (1005)
T KOG2274|consen 801 ALEFVMTEWTSR 812 (1005)
T ss_pred HHHHHHHHHHhh
Confidence 999999999877
No 109
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.19 E-value=0.35 Score=59.90 Aligned_cols=319 Identities=13% Similarity=0.151 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHhchhhhhHHHHHHHHHHH----hhcCCCHHHHHHH-HHHHHHHhHhhccc--chhc-HhhhHHHHH
Q 009182 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCK----LSADSDANVQSAA-HLLDRLVKDIVTES--DQFS-IEEFIPLLR 120 (541)
Q Consensus 49 R~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~k----l~~D~d~~VR~~A-~~L~~l~kdi~~e~--~~~~-l~~~iP~L~ 120 (541)
|.+....+.+++..-.+.+.-.|..+++.+.. .-++++.+|+--| ..|.++.-...... ..|. -..|+..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 55555555555443334444456666666654 3455566665444 44445443333221 1121 235666666
Q ss_pred HHhc-CCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-CC---CCChH
Q 009182 121 ERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN-SP---SVDYG 195 (541)
Q Consensus 121 e~l~-d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~-~~---~~~~~ 195 (541)
..+. ..+.+||..+++++.++....+..+-.=-..++..+-....|.++++-..|-+.+..+.++.-. .+ ...+.
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 6555 4788999999999998876655444443334444333344577777766666666665554221 11 12367
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHH----Hhh--c------------------------------CcCcccchhhH
Q 009182 196 RMAEILVQRAASP-DEFTRLTAITWINEF----VKL--G------------------------------GDQLVPYYADI 238 (541)
Q Consensus 196 ~ii~~Ll~~~~~~-~~~vr~~al~wL~~l----~~~--~------------------------------~~~l~p~l~~l 238 (541)
..|..+.+.++.. +..+-.+|+..+... ++. . .++...+.=.+
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 7888887766544 455666665433322 110 0 00001122334
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC--CCCCC--hHhHH-HH---HHHhcC--------------C------
Q 009182 239 LGAILPCISDKEEKIRVVARETNEELRAIKADP--ADGFD--VGPIL-SI---ATRQLS--------------S------ 290 (541)
Q Consensus 239 lp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~--~~~~~--l~~il-~~---L~~~L~--------------~------ 290 (541)
+-.+.....|..++||..|.+++-..++..+.. ...|+ +..++ |. +..... +
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 445555556888999998887766655443321 01122 23322 22 221110 0
Q ss_pred CCH--HHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-c-----chhhHHHHHHHHH
Q 009182 291 EWE--ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-K-----DLQHFRQLVVFLV 362 (541)
Q Consensus 291 ~~~--~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~-~-----~~~~f~~~m~~LL 362 (541)
..| .|-.-|++.+..+....-+.+.+.+++++..+..+.+.+++-+-...+.+|.++. + .++.-+.++..+.
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 113 3555666666677776667777788888888888888888888888888887766 2 3455666777777
Q ss_pred Hhccc
Q 009182 363 HNFRV 367 (541)
Q Consensus 363 ~~~~~ 367 (541)
++|..
T Consensus 1509 ~lf~~ 1513 (1780)
T PLN03076 1509 EAANA 1513 (1780)
T ss_pred HHHHH
Confidence 77653
No 110
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.13 Score=57.09 Aligned_cols=301 Identities=14% Similarity=0.120 Sum_probs=165.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-hchhhhhHHHHHHHHHHHhhcCC-CHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHH
Q 009182 42 SDQDSRVRYYACEALYNIAKV-VRGDFIIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPL 118 (541)
Q Consensus 42 ~D~d~~VR~~A~eaL~~i~k~-~~~~~~~~~~~i~~~L~kl~~D~-d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~ 118 (541)
.+...-+|+-.+--++.=+.+ ++.+. -+-+..+++++++|. |.-||-++ ..+.-.++ + -+|.-+.|.|.
T Consensus 497 ~~~~RiiRRRVa~ilg~Wvsvq~~~e~---k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD----D-~nF~~dsFlp~ 568 (978)
T KOG1993|consen 497 HGNSRIIRRRVAWILGQWVSVQQKLEL---KPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVD----D-WNFSEDSFLPY 568 (978)
T ss_pred ccchhHHHHHHHHHHhhhhheechHhH---HHHHHHHHHHhcCccccceeehHHHHHHHHhhh----h-ccCChhhhhhh
Confidence 344445565555444443322 11121 234566777899998 88888877 54433333 2 24666777776
Q ss_pred HHHHh-------c-CCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc
Q 009182 119 LRERM-------N-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 119 L~e~l-------~-d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D---~~~eVR~~a~~~L~~ll~~i~ 187 (541)
+-.++ . .+.-++|..+++.++.+....+..+.+|...++..+- .+.+ ..+-.|-+....|..|+..+|
T Consensus 569 lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp-~LWe~s~~e~lLr~alL~~L~~lV~alg 647 (978)
T KOG1993|consen 569 LENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLP-LLWEESEEEPLLRCALLATLRNLVNALG 647 (978)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHhhhccCcHHHHHHHHHHHHHHHHhc
Confidence 63332 2 3566889999999988877666555566655555333 3333 234468888899999999998
Q ss_pred CCCCCChHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 009182 188 NSPSVDYGRMAEILVQRAASPDEFT----RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (541)
Q Consensus 188 ~~~~~~~~~ii~~Ll~~~~~~~~~v----r~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~ 263 (541)
.....-.+-++|++-.++.-+.|.- -..-.-|...+... +.+.|-+=.+.|-+++.+.-+....|.+-.=..+.
T Consensus 648 ~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~--~~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sY 725 (978)
T KOG1993|consen 648 AQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS--QKLTPELLLLFPHLLYIIEQSTENLPTVLMIISSY 725 (978)
T ss_pred cCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc--cccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6654556667777766665444322 22233477655332 33444444455555555544444443221111111
Q ss_pred HHHhhcCCCCCCCh-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHH--hcCCCCHHHHHHH
Q 009182 264 LRAIKADPADGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK--ALSDPSDEVVLLV 340 (541)
Q Consensus 264 L~~~i~~~~~~~~l-~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~--~L~D~~~~V~~~~ 340 (541)
. +..++..-.++ ..+...+.+.+.+-..+.-.+.++.+-.+.+..|--=.-+...++|.+.. +.+|+.|-+-..-
T Consensus 726 i--lLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~y 803 (978)
T KOG1993|consen 726 I--LLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEY 803 (978)
T ss_pred H--hhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHH
Confidence 1 01110000012 35666677766664455555555555555554441101133444454443 4578889998888
Q ss_pred HHHHHHHh-cchhhHH
Q 009182 341 LEVHACIA-KDLQHFR 355 (541)
Q Consensus 341 ~~~L~~i~-~~~~~f~ 355 (541)
+.++++|+ .+++.|-
T Consensus 804 l~vvaRi~l~n~~~~m 819 (978)
T KOG1993|consen 804 LLVVARISLRNPSLFM 819 (978)
T ss_pred HHHHHHHHhcChHHHH
Confidence 99999998 3444443
No 111
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.11 E-value=0.026 Score=57.72 Aligned_cols=192 Identities=15% Similarity=0.047 Sum_probs=128.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhc--CCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC--ChH
Q 009182 120 RERMNVLNPYVRQFLVGWITVLDS--VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--DYG 195 (541)
Q Consensus 120 ~e~l~d~~~~vR~~a~~~l~~L~~--~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~--~~~ 195 (541)
.+.+.+.+..+|..++..+..+.. ..+..+.....++++.+.+.++-...+-+..|.++++-+.-.+|..... -++
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 344566789999999999886543 2334455677888898999998776666777778888887665522212 267
Q ss_pred HHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhcCcCcccch--hhHHHHHhhhc--C-CC---------ChhHHHHHHH
Q 009182 196 RMAEILVQRAASPD--EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCI--S-DK---------EEKIRVVARE 259 (541)
Q Consensus 196 ~ii~~Ll~~~~~~~--~~vr~~al~wL~~l~~~~~~~l~p~l--~~llp~ll~~l--~-d~---------~~~iR~~A~~ 259 (541)
.+.|.|...+.+.. ..+|..|+..++...-+++.+.-... -+.+..+.... . +. ++.+..+|.+
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 88888888887764 45667777777765555554432211 13344222211 1 11 2467888888
Q ss_pred HHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh
Q 009182 260 TNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (541)
Q Consensus 260 ~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~ 311 (541)
+++-|+..+....-.......+|.+...|.+.+..+|++|-..|..+++...
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 8888765543210011236688999999999999999999999999999886
No 112
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.039 Score=61.58 Aligned_cols=227 Identities=15% Similarity=0.212 Sum_probs=158.3
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcH
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l 112 (541)
....+..+.|+..-+|.||...+..+.+.-++.-...-..++......+.|.|+-|=-.| .++..+|+ . . -
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-v-y------~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-V-Y------P 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-h-c------c
Confidence 456788899999999999988888877644333333345789999999999999776666 66666665 2 1 2
Q ss_pred hhhHHHHHHHhcC----CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 009182 113 EEFIPLLRERMNV----LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 113 ~~~iP~L~e~l~d----~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
+.++|.+.+.-.. ..++.|..+=++|..+..--|.=...|...+.....+...||+.+-|-.++..++.+++....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 3558888874322 124666666688888877777667778887777777888899888899999999999987653
Q ss_pred CCCCChHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhhcCcCcccchh----hHHHHHhhhcCCC-ChhHHHHHHHHHH
Q 009182 189 SPSVDYGRMAEILVQR-AASPDEFTRLTAITWINEFVKLGGDQLVPYYA----DILGAILPCISDK-EEKIRVVARETNE 262 (541)
Q Consensus 189 ~~~~~~~~ii~~Ll~~-~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~----~llp~ll~~l~d~-~~~iR~~A~~~~~ 262 (541)
..+-.+..+...++.- ..|....+|++|+.-+.++..-.|.++.|++. .....+.+.+.+. +..+|-.|..+..
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 3222455555444443 44667889999999999988888888888543 3344555555443 4446667776666
Q ss_pred HHHHhh
Q 009182 263 ELRAIK 268 (541)
Q Consensus 263 ~L~~~i 268 (541)
.+....
T Consensus 961 ei~a~l 966 (982)
T KOG4653|consen 961 EIQAAL 966 (982)
T ss_pred HHHHHH
Confidence 554433
No 113
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.10 E-value=0.045 Score=55.95 Aligned_cols=187 Identities=17% Similarity=0.155 Sum_probs=124.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-----ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hhc-Cc
Q 009182 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-----DYGRMAEILVQRAASPDEFTRLTAITWINEFV-KLG-GD 229 (541)
Q Consensus 157 L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~-----~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~-~~~-~~ 229 (541)
|...+..+.|.+...|.++-..+...+ .....+ ....+++.+...++.+..+-+..|+..++-++ .++ |.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l---~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRAL---SSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 444445778888899998866655554 322222 24677888888888776655555655555453 333 45
Q ss_pred CcccchhhHHHHHhhhcCCCC--hhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHH-----HhcCC----------CC
Q 009182 230 QLVPYYADILGAILPCISDKE--EKIRVVARETNEELRAIKADPADGFDVGPILSIAT-----RQLSS----------EW 292 (541)
Q Consensus 230 ~l~p~l~~llp~ll~~l~d~~--~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~-----~~L~~----------~~ 292 (541)
+.-..+..+.|.+.+.+.|.. +.+|..+..+++-+. .+... +.-+....++.+. ..... ++
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~-fv~~~-d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICT-FVGGS-DEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHH-HhhcC-ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 555678889999999888854 567777766666443 22221 1122342233332 11211 13
Q ss_pred HHHHHHHHHHHHHHHhhChH-HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 293 EATRIEALHWISTLLNRHRT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 293 ~~~R~aal~wL~~L~~~~~~-~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
....-+|+..++.|+...|. .+..+++..+|.+...|..++.+||..+-++++-+.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45789999999999988877 466678889999999999999999999999999887
No 114
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.21 Score=55.59 Aligned_cols=254 Identities=13% Similarity=0.095 Sum_probs=134.7
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 009182 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~ 190 (541)
....+.|.+..+++++..-|-.-+...+..+....+.++.+ -...|--+++-+....|-+|...|.++....+..+
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 35667888888888888888888888888887777766655 22223335555677778888888888876554332
Q ss_pred ---CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC---CC-----hhHHHHHHH
Q 009182 191 ---SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD---KE-----EKIRVVARE 259 (541)
Q Consensus 191 ---~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d---~~-----~~iR~~A~~ 259 (541)
+.+++++|. |.+-.+ |-..|..+.+.+.+.- ..+++..+-..++| .. ..+|....+
T Consensus 318 ~~cN~elE~lIt-------d~NrsI---at~AITtLLKTG~e~s---v~rLm~qI~~fv~disDeFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 318 TVCNLDLESLIT-------DSNRSI---ATLAITTLLKTGTESS---VDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK 384 (865)
T ss_pred cccchhHHhhhc-------ccccch---hHHHHHHHHHhcchhH---HHHHHHHHHHHHHhccccceEEeHHHHHHHHhh
Confidence 223444432 222222 2222333333333332 23333333333333 21 112221111
Q ss_pred H-------HHHHHHhhcCCCCCCCh-HhHHHHHHHhcCC----------------CCHHHHHHHHHHHHHHHhhChHHHh
Q 009182 260 T-------NEELRAIKADPADGFDV-GPILSIATRQLSS----------------EWEATRIEALHWISTLLNRHRTEVL 315 (541)
Q Consensus 260 ~-------~~~L~~~i~~~~~~~~l-~~il~~L~~~L~~----------------~~~~~R~aal~wL~~L~~~~~~~i~ 315 (541)
. ..-|.++..+ ..++++ ..+++++...... ++.+.+.-+.+.++.++.-+|....
T Consensus 385 fp~k~~~~m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~ 463 (865)
T KOG1078|consen 385 FPRKHTVMMNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPN 463 (865)
T ss_pred ccHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCC
Confidence 0 0001112222 122332 2333333333321 1233344455555666666655544
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhcc-ccchhhhhhHHHHHHHhh
Q 009182 316 HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR-VDNSLLEKRGALIIRRLC 384 (541)
Q Consensus 316 ~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~-~~~~ll~~r~~~iir~Lc 384 (541)
| ..++-.+.+..-=.+..||..+..++++++.+.+...+=+..+++++. +.....++|+.+..+.+-
T Consensus 464 P--skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 464 P--SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred c--chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 4 234444444444456778888999999999666677777777777664 334556788888887764
No 115
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.05 E-value=0.0073 Score=55.67 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=94.4
Q ss_pred cccchhhHHHHHhhhcCC------------------CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC
Q 009182 231 LVPYYADILGAILPCISD------------------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 292 (541)
Q Consensus 231 l~p~l~~llp~ll~~l~d------------------~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~ 292 (541)
+.|+++.++|.+..-..= ..-++|.+|.++..++++.... ..++..+++.+...+.+ +
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~---~~~~~~~~~~v~~GL~D-~ 78 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS---RIDISEFLDRVEAGLKD-E 78 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS---SS-HHHHHHHHHHTTSS--
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHhhcCC-c
Confidence 467889999998875542 1247999999999999875443 47889999999999988 8
Q ss_pred HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC----CC--------CHHHHHHHHHHHHHHh------cchh-h
Q 009182 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS----DP--------SDEVVLLVLEVHACIA------KDLQ-H 353 (541)
Q Consensus 293 ~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~----D~--------~~~V~~~~~~~L~~i~------~~~~-~ 353 (541)
..+|.-+...+..+...+|..+.+.++.+.+.+-++|+ +. ..+....++++...+. +... .
T Consensus 79 ~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~ 158 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNK 158 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-H
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHH
Confidence 88999999999999999999999999999998888874 32 2345556777777773 1223 5
Q ss_pred HHHHHHHH
Q 009182 354 FRQLVVFL 361 (541)
Q Consensus 354 f~~~m~~L 361 (541)
|..|+..+
T Consensus 159 ~~~f~~~i 166 (169)
T PF08623_consen 159 WNEFVEWI 166 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 116
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.45 Score=52.76 Aligned_cols=271 Identities=16% Similarity=0.117 Sum_probs=155.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC---------------
Q 009182 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP--------------- 190 (541)
Q Consensus 126 ~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~--------------- 190 (541)
.||.+--..+.+++.+.+..+.+++. =+.+++-|++.+. .+++|.+||.|+-..+.. +.+|
T Consensus 205 ~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~--ieelR~aac~cilaiVsK-kMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLN--IEELRIAACNCILAIVSK-KMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHH
Confidence 48888888999999988888877664 3445555666665 778899998886555431 1111
Q ss_pred -----------C--------------------------------------CChHHHHHHHHHhcCCCCHHHHHHHH-HHH
Q 009182 191 -----------S--------------------------------------VDYGRMAEILVQRAASPDEFTRLTAI-TWI 220 (541)
Q Consensus 191 -----------~--------------------------------------~~~~~ii~~Ll~~~~~~~~~vr~~al-~wL 220 (541)
+ ..+-+++|++++.+.+.+..+-.... +|.
T Consensus 281 lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFls 360 (980)
T KOG2021|consen 281 LFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLS 360 (980)
T ss_pred HHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 0 01235667777776666555544333 455
Q ss_pred HHHHhhcC-----cCcccchhhHHHHHhhhcCCCC-----hh-----HHHH---HHHHHHHHHHhhcCCCCCCChHhHHH
Q 009182 221 NEFVKLGG-----DQLVPYYADILGAILPCISDKE-----EK-----IRVV---ARETNEELRAIKADPADGFDVGPILS 282 (541)
Q Consensus 221 ~~l~~~~~-----~~l~p~l~~llp~ll~~l~d~~-----~~-----iR~~---A~~~~~~L~~~i~~~~~~~~l~~il~ 282 (541)
+.++.+-+ +....++.+++-++.+.+.|.+ .+ -... .++-+.-+.+.+...+...-+..+=.
T Consensus 361 dyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~ 440 (980)
T KOG2021|consen 361 DYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQ 440 (980)
T ss_pred HHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55444322 2233467778888887776531 11 0001 11222223333332111111122222
Q ss_pred HH---HHhcCCCCHHHHHHHHHHHHHHHhhChHHHh----------hhhHHHHHHHHHh--cCCCCHHHHHHHHHHHHHH
Q 009182 283 IA---TRQLSSEWEATRIEALHWISTLLNRHRTEVL----------HFLNDIFDTLLKA--LSDPSDEVVLLVLEVHACI 347 (541)
Q Consensus 283 ~L---~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~----------~~l~~l~p~Ll~~--L~D~~~~V~~~~~~~L~~i 347 (541)
.+ ...-..++|..-+.|+.-+..+++..++.-. ..+..+.+.++++ ++.+.+.|...-.+.+-++
T Consensus 441 slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY 520 (980)
T KOG2021|consen 441 SLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRY 520 (980)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHH
Confidence 23 3333457889999999999999999764322 1233555666543 5567777777777777776
Q ss_pred h----cchhhHHHHHHHHHHhc--cccchhhhhhHHHHHHHhhccCCh------hhHHHHHHHHh
Q 009182 348 A----KDLQHFRQLVVFLVHNF--RVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTIL 400 (541)
Q Consensus 348 ~----~~~~~f~~~m~~LL~~~--~~~~~ll~~r~~~iir~Lc~~l~~------e~i~~~l~~il 400 (541)
. ...++...++...+... ++.+..++.|+.+.+-..-++++. |.|-..+.+.|
T Consensus 521 ~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 521 NKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 24556666666666633 344555677888877665555543 55666666666
No 117
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.52 Score=56.29 Aligned_cols=150 Identities=19% Similarity=0.136 Sum_probs=109.1
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
..+..++|.|..-+..++..+|.-+++.+|.+-.-++..+..-.|.++..-+.-+.|-+.+||-++.++...++..
T Consensus 255 ~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~---- 330 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN---- 330 (1266)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc----
Confidence 3467789999999999999999999999999988888777677778888888899999999999998888877743
Q ss_pred CCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 009182 190 PSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (541)
Q Consensus 190 ~~~~~-~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~ 266 (541)
+++. ......+.-+..+.|+.+|......+. .+.+....+ .+.|.++..+..-+.|....||..|.+.+.++.+
T Consensus 331 -~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~-~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 331 -NPSIAKASTILLALRERDLDEDVRVRTQVVIV-ACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred -CchhhhHHHHHHHHHhhcCChhhhheeeEEEE-EeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2343 333333444456667776644321111 011111122 2556688888888889999999999998888876
No 118
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.037 Score=54.00 Aligned_cols=193 Identities=20% Similarity=0.225 Sum_probs=123.0
Q ss_pred hhHHHHhhcCC--CCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHH-hH-hhcc-
Q 009182 33 IVPPVLNSFSD--QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV-KD-IVTE- 106 (541)
Q Consensus 33 ii~~vl~~l~D--~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~-kd-i~~e- 106 (541)
-+|.+...++| +.+-||..|+++|.++. .+++.+.+.|..+||-..||+.- .++.++= ++ +.++
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~ 137 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIA 137 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccccc
Confidence 56777776765 56889999999999875 25778888998899999999965 5565542 11 1110
Q ss_pred -c--------chhcHhhhHHHHHHHhcCCC-H-HHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHH
Q 009182 107 -S--------DQFSIEEFIPLLRERMNVLN-P-YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (541)
Q Consensus 107 -~--------~~~~l~~~iP~L~e~l~d~~-~-~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a 175 (541)
+ ....-..=++.+.+-+.|++ | .-|+.++-. +-++.+.+- ...+..-++|.+.-.|.++
T Consensus 138 ~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~---LRn~g~Eea-------I~al~~~l~~~SalfrhEv 207 (289)
T KOG0567|consen 138 NSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFY---LRNIGTEEA-------INALIDGLADDSALFRHEV 207 (289)
T ss_pred ccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhH---hhccCcHHH-------HHHHHHhcccchHHHHHHH
Confidence 0 00111122555555555532 2 334433333 333333321 2234446778888899999
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHH
Q 009182 176 DSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (541)
Q Consensus 176 ~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~ 255 (541)
.-+++++-... .++.+...|.... .++-||..|.+.++.++. ++.++++-..+.|.++-||+
T Consensus 208 AfVfGQl~s~~------ai~~L~k~L~d~~--E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~e 269 (289)
T KOG0567|consen 208 AFVFGQLQSPA------AIPSLIKVLLDET--EHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRE 269 (289)
T ss_pred HHHHhhccchh------hhHHHHHHHHhhh--cchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHH
Confidence 89988774321 2455555555433 267899999998886543 67888999999999999998
Q ss_pred HHHHHHHH
Q 009182 256 VARETNEE 263 (541)
Q Consensus 256 ~A~~~~~~ 263 (541)
.+.-+.+-
T Consensus 270 sc~valdm 277 (289)
T KOG0567|consen 270 SCEVALDM 277 (289)
T ss_pred HHHHHHHH
Confidence 87766553
No 119
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.93 E-value=0.23 Score=54.22 Aligned_cols=275 Identities=16% Similarity=0.149 Sum_probs=132.8
Q ss_pred hhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHH
Q 009182 19 YADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLD 97 (541)
Q Consensus 19 ~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~ 97 (541)
+.+.+......-+.-+...+....|.|..||..|...|..+++... .+...+.++|.++++..|+....++ .+|.
T Consensus 46 I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 46 IPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLM 121 (556)
T ss_dssp HHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445555555566677788888899999999998887777765422 3456788899998887777777777 6666
Q ss_pred HHHhHhhcccchhcHhhhHHHHHHHh--cCCCHHHHHHHHHHHH-HhhcCCCchhh--hchHHH-HHHHHHHcCCCCHHH
Q 009182 98 RLVKDIVTESDQFSIEEFIPLLRERM--NVLNPYVRQFLVGWIT-VLDSVPDIDML--GFLPDF-LDGLFNMLSDSSHEI 171 (541)
Q Consensus 98 ~l~kdi~~e~~~~~l~~~iP~L~e~l--~d~~~~vR~~a~~~l~-~L~~~~~~~l~--~~lp~~-L~~L~~lL~D~~~eV 171 (541)
.+++--. ...+ -..+.... ...+..+|.-++.-|. .+..+++.-+. .-+.++ ...+-+.|.|...+=
T Consensus 122 ~ll~~d~----k~tL---~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeE 194 (556)
T PF05918_consen 122 SLLKQDP----KGTL---TGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEE 194 (556)
T ss_dssp HHHHH-H----HHHH---HHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHH
T ss_pred HHHhcCc----HHHH---HHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHH
Confidence 6655111 1112 22222222 1456788999888774 44444433222 122233 445557888855322
Q ss_pred HHHHHHHHHHHHHHhcC----CCCCChHHHHHHHHHhcCC------CCHH-H-HHHHH--HHHHHHHhhcCcCcccchhh
Q 009182 172 RQQADSALWEFLQEIKN----SPSVDYGRMAEILVQRAAS------PDEF-T-RLTAI--TWINEFVKLGGDQLVPYYAD 237 (541)
Q Consensus 172 R~~a~~~L~~ll~~i~~----~~~~~~~~ii~~Ll~~~~~------~~~~-v-r~~al--~wL~~l~~~~~~~l~p~l~~ 237 (541)
= ..+-.+++..+. .+....+.+++++.+...- .|++ | |...+ ..+.-+. .+..-.+|+.-
T Consensus 195 F----~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs--~~v~Sskfv~y 268 (556)
T PF05918_consen 195 F----ELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS--RGVSSSKFVNY 268 (556)
T ss_dssp H----HHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B--TTB--HHHHHH
T ss_pred H----HHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc--CCCChHHHHHH
Confidence 1 222234444432 1112357788888876531 1222 2 22211 1111111 12223345555
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC------C----CCHHHHHHHHHHHHHHH
Q 009182 238 ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS------S----EWEATRIEALHWISTLL 307 (541)
Q Consensus 238 llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~------~----~~~~~R~aal~wL~~L~ 307 (541)
+..-++|.+.+=.++.|- +.+..+.++....+ ..+-.+.++.+.+.|. + -++..-++.+..++.|+
T Consensus 269 ~~~kvlP~l~~l~e~~kl---~lLk~lAE~s~~~~-~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La 344 (556)
T PF05918_consen 269 MCEKVLPKLSDLPEDRKL---DLLKLLAELSPFCG-AQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLA 344 (556)
T ss_dssp HHHHTCCCTT-----HHH---HHHHHHHHHHTT-----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHH
T ss_pred HHHHhcCChhhCChHHHH---HHHHHHHHHcCCCC-cccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHh
Confidence 666677766654333332 33333333332221 2334455554444331 1 13344566677888888
Q ss_pred hhChHHH
Q 009182 308 NRHRTEV 314 (541)
Q Consensus 308 ~~~~~~i 314 (541)
.+.|+..
T Consensus 345 ~k~p~~~ 351 (556)
T PF05918_consen 345 RKSPNSL 351 (556)
T ss_dssp TT-THHH
T ss_pred hhCcchh
Confidence 8888754
No 120
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.91 E-value=0.03 Score=51.86 Aligned_cols=135 Identities=14% Similarity=0.205 Sum_probs=111.7
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhc
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~ 187 (541)
..+.+++-.+...+++.+++.|-..+..++......+-+ +..+-...+..+.+.+..+ .+.+++.++.++..+...+.
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 356777888888999999999999999999888887545 5588889999999999875 45679999999999998877
Q ss_pred CCCC-------CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhc
Q 009182 188 NSPS-------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (541)
Q Consensus 188 ~~~~-------~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l 246 (541)
..+. +.++.+++.+++..++ ......++..+..+....+..+.||..++-..+.+.+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 6543 4578888888887775 5667788899999999999999999999988887765
No 121
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.91 E-value=0.019 Score=58.05 Aligned_cols=144 Identities=19% Similarity=0.251 Sum_probs=104.6
Q ss_pred chhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh---h---hHHHHHHHHHHHhhc--------CCCHHHH
Q 009182 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF---I---IFFNQIFDALCKLSA--------DSDANVQ 90 (541)
Q Consensus 25 ~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~---~---~~~~~i~~~L~kl~~--------D~d~~VR 90 (541)
.++++..-++|+++..++|.+..+|..+|..+..+.+.+.... + .....+.+++.+.+. |....+=
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 4478899999999999999999999999999999998765333 2 334556667776665 5666666
Q ss_pred HHH-HHHHHHHhHhhcccc---hhcHhhhHHH-HHHHhc-CC---CHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHH
Q 009182 91 SAA-HLLDRLVKDIVTESD---QFSIEEFIPL-LRERMN-VL---NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (541)
Q Consensus 91 ~~A-~~L~~l~kdi~~e~~---~~~l~~~iP~-L~e~l~-d~---~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~ 161 (541)
..| .++..+++-.-.+.+ ...+..++.. +...+. .. .+.+|.+.++.+..+.+..|.....|+..+++.+.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 667 677776653322211 1223333322 333332 23 48999999999999999999999999999999999
Q ss_pred HHcCCCC
Q 009182 162 NMLSDSS 168 (541)
Q Consensus 162 ~lL~D~~ 168 (541)
+.+.|+.
T Consensus 272 ~~l~npf 278 (282)
T PF10521_consen 272 QILENPF 278 (282)
T ss_pred HHhcCCC
Confidence 9998875
No 122
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.91 E-value=0.011 Score=68.23 Aligned_cols=167 Identities=22% Similarity=0.238 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhc-CCCHH--------HHHHH-HHHHHHHhHhhcccchhcHhhhHHH
Q 009182 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDAN--------VQSAA-HLLDRLVKDIVTESDQFSIEEFIPL 118 (541)
Q Consensus 49 R~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~-D~d~~--------VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~ 118 (541)
|..|-.+|..+++..++......+.+.+.|.+.++ +.+.+ |-+.+ ...+..+ .++-...|.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l---------~~~~~~l~~ 820 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFL---------HPLGSLLPR 820 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhh---------hhhhhhhhH
Confidence 66677778888888888776555566666655332 22221 11111 1111111 124456888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 009182 119 LRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRM 197 (541)
Q Consensus 119 L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~i 197 (541)
+..+.++..+.+|..+..+++.+.+....+ +...+..+++ ++.|.+.-+|++....+-.++
T Consensus 821 l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~----ll~~~~~~~~r~~a~e~~~~l-------------- 882 (1549)
T KOG0392|consen 821 LFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLP----LLGDLDKFVRRQGADELIELL-------------- 882 (1549)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccchhhHhhhhhHHHHHHHH--------------
Confidence 999999999999999999999887765543 3344444444 777777777666544433332
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 009182 198 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (541)
Q Consensus 198 i~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i 268 (541)
.......+.||.|-++|.++.+|+|+...+|++|.++...+..++
T Consensus 883 --------------------------~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 883 --------------------------DAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLL 927 (1549)
T ss_pred --------------------------HHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccc
Confidence 334455677888888888888888888888888888877765543
No 123
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.48 Score=52.23 Aligned_cols=266 Identities=17% Similarity=0.129 Sum_probs=145.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc--------------
Q 009182 42 SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE-------------- 106 (541)
Q Consensus 42 ~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e-------------- 106 (541)
+|...-||..||.++..+-+...+.+-+ .+=++-+..+++|.|-.|--+| ..+..++|....+
T Consensus 158 ~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r 235 (938)
T KOG1077|consen 158 GSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR 235 (938)
T ss_pred CcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH
Confidence 3566778888888877776654322211 1224556678889998888877 5555554422211
Q ss_pred ----cc-------------hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc-----hh--hhchHHHHHHHH-
Q 009182 107 ----SD-------------QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-----DM--LGFLPDFLDGLF- 161 (541)
Q Consensus 107 ----~~-------------~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~-----~l--~~~lp~~L~~L~- 161 (541)
.+ ..-.-+++..|..+=..+++.+|..+.+.+..+.+.+.. +. ..--..+|=...
T Consensus 236 iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~ 315 (938)
T KOG1077|consen 236 IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS 315 (938)
T ss_pred HHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHH
Confidence 00 011112222222222234555555555555544332210 00 001111111111
Q ss_pred -HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHH
Q 009182 162 -NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG 240 (541)
Q Consensus 162 -~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp 240 (541)
.+.-|+.++.-..|+..|+.|+ .+.+..+|.-|++-+..++.... ...-+.+=..
T Consensus 316 l~~h~D~e~~ll~~~~~~Lg~fl----------------------s~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d 371 (938)
T KOG1077|consen 316 LAIHLDSEPELLSRAVNQLGQFL----------------------SHRETNIRYLALESMCKLASSEF--SIDAVKKHQD 371 (938)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHh----------------------hcccccchhhhHHHHHHHHhccc--hHHHHHHHHH
Confidence 1223555555555555555554 45566778877777666655422 1111223356
Q ss_pred HHhhhcC-CCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhH
Q 009182 241 AILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (541)
Q Consensus 241 ~ll~~l~-d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~ 319 (541)
.++..|. +.+-.||..|.+.+ ..++.. -+-..|+..+.+.+.+.++.+|+.-..=...|+++...+..=|.+
T Consensus 372 ~Ii~sLkterDvSirrravDLL---Y~mcD~----~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVd 444 (938)
T KOG1077|consen 372 TIINSLKTERDVSIRRRAVDLL---YAMCDV----SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVD 444 (938)
T ss_pred HHHHHhccccchHHHHHHHHHH---HHHhch----hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 7777787 67888887765544 444432 235789999999999999999999888888999999888764544
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHH
Q 009182 320 DIFDTLLKALSDP-SDEVVLLVL 341 (541)
Q Consensus 320 ~l~p~Ll~~L~D~-~~~V~~~~~ 341 (541)
.++ .|++.-.|- +++|-..++
T Consensus 445 viL-qLiriagd~vsdeVW~Rvv 466 (938)
T KOG1077|consen 445 VIL-QLIRIAGDYVSDEVWYRVV 466 (938)
T ss_pred HHH-HHHHHhcccccHHHHHHhh
Confidence 443 344555554 456555444
No 124
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.85 E-value=0.017 Score=53.84 Aligned_cols=75 Identities=24% Similarity=0.216 Sum_probs=69.8
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-ChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 274 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 274 ~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~-~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
.+|++..+|.+.+.+.....+.|.-|.+.+..+.+. .++.+.|.++++++.+-+.|+-.+++|...++++|..+.
T Consensus 33 ~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv 108 (183)
T PF10274_consen 33 KLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLV 108 (183)
T ss_pred hcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 468999999999999988888899999999888888 899999999999999999999999999999999999994
No 125
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.85 E-value=0.024 Score=60.72 Aligned_cols=140 Identities=20% Similarity=0.189 Sum_probs=93.9
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
..+..++..+++....+|..||+-.|..+.-++.+.+.--..-+|.+...|.+-+=|.++.||..| ..|.+.-++-..+
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 345556677899999999999999999999888877753334467888888888899999999999 7776654322222
Q ss_pred cchhcHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l-~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
+.+ +...|...+ +|++.+||..++..|.+=.+. +|.+..-..|.+...|+..- ...+..
T Consensus 167 -en~----~~n~l~~~vqnDPS~EVRr~allni~vdnsT------------~p~IlERarDv~~anRr~vY---~r~Lp~ 226 (885)
T COG5218 167 -ENR----IVNLLKDIVQNDPSDEVRRLALLNISVDNST------------YPCILERARDVSGANRRMVY---ERCLPR 226 (885)
T ss_pred -HHH----HHHHHHHHHhcCcHHHHHHHHHHHeeeCCCc------------chhHHHHhhhhhHHHHHHHH---HHHhhh
Confidence 222 233333333 579999999998776542222 22333467777777776652 334444
Q ss_pred hc
Q 009182 186 IK 187 (541)
Q Consensus 186 i~ 187 (541)
+|
T Consensus 227 iG 228 (885)
T COG5218 227 IG 228 (885)
T ss_pred hc
Confidence 44
No 126
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=1.1 Score=49.77 Aligned_cols=271 Identities=17% Similarity=0.198 Sum_probs=142.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~ 151 (541)
-+-+++-+=++.|++-||... .. +|| +.| .--++.++|.+..++.+++++||++|+-++..+-.. ...+++
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRF---Lck--LkE--~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~p 170 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRF---LCK--LKE--PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIP 170 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhh---hhh--cCc--HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcC
Confidence 455566677889999999765 33 343 233 345889999999999999999999999888877655 334445
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHhhcC
Q 009182 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP---DEFTRLTAITWINEFVKLGG 228 (541)
Q Consensus 152 ~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~---~~~vr~~al~wL~~l~~~~~ 228 (541)
=-|+++... +..|.++.-++.| |+.-+ ..|-+.-+.++..+..+- ++..+...++.|..-+...+
T Consensus 171 DapeLi~~f--L~~e~DpsCkRNA------Fi~L~----~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 171 DAPELIESF--LLTEQDPSCKRNA------FLMLF----TTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred ChHHHHHHH--HHhccCchhHHHH------HHHHH----hcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH
Confidence 555555433 2355566665554 22111 123344445554443322 34555555555555444322
Q ss_pred cCcccchhhHHHHHhhhcCCCC-----------------hhHHHHHHHHHHHHH-HhhcCCCCCCC--------------
Q 009182 229 DQLVPYYADILGAILPCISDKE-----------------EKIRVVARETNEELR-AIKADPADGFD-------------- 276 (541)
Q Consensus 229 ~~l~p~l~~llp~ll~~l~d~~-----------------~~iR~~A~~~~~~L~-~~i~~~~~~~~-------------- 276 (541)
..-..|+ ..+...++.++ |+.-.+|.++.-.+. +.-.++...+.
T Consensus 239 ~~~~~~i----~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~i 314 (948)
T KOG1058|consen 239 AEKARYI----RCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKI 314 (948)
T ss_pred HHhhHHH----HHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHH
Confidence 2222222 22223332222 222222333222221 11111100011
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-ChHHHhhhhHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHh-cch
Q 009182 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALS---DPSDEVVLLVLEVHACIA-KDL 351 (541)
Q Consensus 277 l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~-~~~~i~~~l~~l~p~Ll~~L~---D~~~~V~~~~~~~L~~i~-~~~ 351 (541)
++.++=-+...+..++.++|..++....-|... --+++..++.. .+.++=+ |....-|..-.+++...+ ..+
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkk---e~~kT~~~e~d~~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKK---EVMKTHNEESDDNGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHH---HHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence 223333345567788999999999866554443 33444443332 2233322 223344666666666665 345
Q ss_pred hhHHHHHHHHHHhccccch
Q 009182 352 QHFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 352 ~~f~~~m~~LL~~~~~~~~ 370 (541)
.+=..+++-|++.+.+.+.
T Consensus 392 ~~aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 392 EVAATVVSLLLDFISDSNE 410 (948)
T ss_pred HHHHHHHHHHHHHhccCCH
Confidence 5556677777777765543
No 127
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=1.4 Score=50.47 Aligned_cols=292 Identities=14% Similarity=0.129 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhhcchhHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhc---hhhhhHHHHHHHHHHHh
Q 009182 6 SFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKL 81 (541)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~-D~d~~VR~~A~eaL~~i~k~~~---~~~~~~~~~i~~~L~kl 81 (541)
.|+=+--.+-+..++..-+.-...+.++...+.+|+. |++--||-.|+.|+..+..... ..+.++.+++.+.|+++
T Consensus 476 g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 476 GYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKL 555 (1010)
T ss_pred hHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHH
Confidence 3444444555577776666668889999999999998 9999999999999999887764 23778999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhHhhcccchhc---HhhhHHHHHHHhcC---CCH---HHHHHHHHHHHHhhcC----CC-c
Q 009182 82 SADSDANVQSAAHLLDRLVKDIVTESDQFS---IEEFIPLLRERMNV---LNP---YVRQFLVGWITVLDSV----PD-I 147 (541)
Q Consensus 82 ~~D~d~~VR~~A~~L~~l~kdi~~e~~~~~---l~~~iP~L~e~l~d---~~~---~vR~~a~~~l~~L~~~----~~-~ 147 (541)
..+.+.+.-... +..++.....|-..++ ...+...+...+.+ .++ +--..|++.++.+.++ .. .
T Consensus 556 ~ne~End~Lt~v--me~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p 633 (1010)
T KOG1991|consen 556 SNEVENDDLTNV--MEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHP 633 (1010)
T ss_pred HHhcchhHHHHH--HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccH
Confidence 998887655443 2222221221211111 12233333344432 222 2233344444443332 11 1
Q ss_pred hhhh-chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 148 DMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 148 ~l~~-~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~ 226 (541)
++.. .=|.+++.+-.++.....|+=+++.+......-..+ ..++.+=++.+.+.+..++..-..=-..+-|+.+++..
T Consensus 634 ~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~-~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 634 EVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSK-EISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhc-ccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence 1222 234445555566666666776666555555432221 12456677888888888776655455567788888877
Q ss_pred cCcCcc---cchhhHHHHHhhhcCCC---ChhHHHHHHHHHHHHHHhhcCCCCCCC--hHhHHHHHHHhcCC--CCHHHH
Q 009182 227 GGDQLV---PYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFD--VGPILSIATRQLSS--EWEATR 296 (541)
Q Consensus 227 ~~~~l~---p~l~~llp~ll~~l~d~---~~~iR~~A~~~~~~L~~~i~~~~~~~~--l~~il~~L~~~L~~--~~~~~R 296 (541)
++..+. .|+.-+...+.++|... +++. +.|.+..+.+.-.++. .+| .+..+.+....+.. ++...|
T Consensus 713 g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~~kg---~~dq~iplf~~~a~~~l~~~~e~s~~~ 788 (1010)
T KOG1991|consen 713 GTPSLLSNPDYLQILLEIIKKVLTSENGEDSDC-ESACKLLEVIILNCKG---LLDQYIPLFLELALSRLTREVETSELR 788 (1010)
T ss_pred CchhhhccchHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHHhcC---cHhhHhHHHHHHHHHHHhccccchHHH
Confidence 766554 24455666666677663 2343 3445555544333332 121 35566666666654 667778
Q ss_pred HHHHHHHH
Q 009182 297 IEALHWIS 304 (541)
Q Consensus 297 ~aal~wL~ 304 (541)
..+++...
T Consensus 789 ~~~leVvi 796 (1010)
T KOG1991|consen 789 VMLLEVVI 796 (1010)
T ss_pred HHHHHHHH
Confidence 88887554
No 128
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.80 E-value=0.028 Score=60.22 Aligned_cols=174 Identities=18% Similarity=0.158 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC
Q 009182 68 IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD 146 (541)
Q Consensus 68 ~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~ 146 (541)
.......|--+.+.+..++..||... ..+..+ -|.+.+-+..--+.++..|.+++.|..+.||.-|+.++..+....+
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~-~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALL-SDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 34456677788889999999999999 555444 4466554455567889999999999999999999999998876654
Q ss_pred chhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 147 ~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~ 226 (541)
.+-..... ++.. ..=.||+.+||+.|. +.... -++-.|+++++++|.+-..|...-. ..+.++
T Consensus 165 neen~~~n-~l~~--~vqnDPS~EVRr~al------lni~v------dnsT~p~IlERarDv~~anRr~vY~--r~Lp~i 227 (885)
T COG5218 165 NEENRIVN-LLKD--IVQNDPSDEVRRLAL------LNISV------DNSTYPCILERARDVSGANRRMVYE--RCLPRI 227 (885)
T ss_pred ChHHHHHH-HHHH--HHhcCcHHHHHHHHH------HHeee------CCCcchhHHHHhhhhhHHHHHHHHH--HHhhhh
Confidence 33211111 2221 123799999999883 22111 1234688899999888777765432 223334
Q ss_pred cCcCcccchhhHHHHHhhhcCCCChhHHHHHHHH
Q 009182 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (541)
Q Consensus 227 ~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~ 260 (541)
+......--+++. .+-.++.|.+..+|.++.+.
T Consensus 228 Gd~~~lsi~kri~-l~ewgl~dRe~sv~~a~~d~ 260 (885)
T COG5218 228 GDLKSLSIDKRIL-LMEWGLLDREFSVKGALVDA 260 (885)
T ss_pred cchhhccccceeh-hhhhcchhhhhhHHHHHHHH
Confidence 3332222234444 44556777777777766543
No 129
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.71 Score=46.60 Aligned_cols=309 Identities=15% Similarity=0.180 Sum_probs=170.3
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch----hhhhH-HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHh---
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFIIF-FNQIFDALCKLSADSDANVQSAA-HLLDRLVK--- 101 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~----~~~~~-~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~k--- 101 (541)
....|-+.+.+..+|..|..-||..+..|.+.+.. +++.. =+++++.+...+...|-+|-++| +.+.++..
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 34556677889999999999999999998887742 33321 25788888888999999999999 77766532
Q ss_pred ---HhhcccchhcHhhhHH-HHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhc-hHHHHHHHHHHcCC-CCHHHHHHH
Q 009182 102 ---DIVTESDQFSIEEFIP-LLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSD-SSHEIRQQA 175 (541)
Q Consensus 102 ---di~~e~~~~~l~~~iP-~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~-lp~~L~~L~~lL~D-~~~eVR~~a 175 (541)
.+. +++. .=| .+...-...|.-+|.-+.+.|-.+.++.+...... -..+++.|..=++. .+.-||..+
T Consensus 161 aleaiF-eSel-----lDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianc 234 (524)
T KOG4413|consen 161 ALEAIF-ESEL-----LDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANC 234 (524)
T ss_pred HHHHhc-cccc-----CChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence 111 1111 001 11111123566788888888888888776533221 12334444444443 345567777
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHh--cCCCCHHHHHHHHHHHHHH------HhhcCcCcccchhhHHHHHhhhcC
Q 009182 176 DSALWEFLQEIKNSPSVDYGRMAEILVQR--AASPDEFTRLTAITWINEF------VKLGGDQLVPYYADILGAILPCIS 247 (541)
Q Consensus 176 ~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~--~~~~~~~vr~~al~wL~~l------~~~~~~~l~p~l~~llp~ll~~l~ 247 (541)
.+...++...-.......-..+|..+-.. -.|++|.-+..++-..+.| .++.++....-++-.+...+.+..
T Consensus 235 iElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE 314 (524)
T KOG4413|consen 235 IELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE 314 (524)
T ss_pred HHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence 66666554322111101112333333222 1345666555454333322 233455555566777778888887
Q ss_pred CCChhHHHHHHHHHHHHHHhhc------CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC---hHHHhh--
Q 009182 248 DKEEKIRVVARETNEELRAIKA------DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH---RTEVLH-- 316 (541)
Q Consensus 248 d~~~~iR~~A~~~~~~L~~~i~------~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~---~~~i~~-- 316 (541)
-.+|+..++|.++.|.+....+ +++ -+..=..+...+......-.+++++++-.++... |+.+.+
T Consensus 315 mnDpdaieaAiDalGilGSnteGadlllkTg----ppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgk 390 (524)
T KOG4413|consen 315 MNDPDAIEAAIDALGILGSNTEGADLLLKTG----PPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGK 390 (524)
T ss_pred cCCchHHHHHHHHHHhccCCcchhHHHhccC----ChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccH
Confidence 7889989999998887632211 111 0111122222222222223444455544444332 222211
Q ss_pred ----hhHHH------------HHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 317 ----FLNDI------------FDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 317 ----~l~~l------------~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
.-..+ ....+..++.|.|+++..+++++..|+.
T Consensus 391 aeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 391 AEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 00111 1234567888999999999998888883
No 130
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.17 Score=56.69 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=126.1
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCcccchh--hHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhcCCCC
Q 009182 198 AEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISD-KEEKIRVVARETNEELRAIKADPAD 273 (541)
Q Consensus 198 i~~Ll~~~~~~-~~~vr~~al~wL~~l~~~~~~~l~p~l~--~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i~~~~~ 273 (541)
+..|++.++.. |+..+..|+.=+.++..++.++.+.-+| .++|++...+++ .+++|-..|.++...+++..-....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34455555544 8888888887777777777666554444 899999999998 5799999999999999887654322
Q ss_pred CCChHhHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--c
Q 009182 274 GFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--D 350 (541)
Q Consensus 274 ~~~l~~il~~L~~~L~~~~-~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~ 350 (541)
.+--...+|++.+.|..-. ..+-+.+|+++-.+.+.-|..+..- .. +.+.+.-|.-=+-.+...|+-+-+.+|+ .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A-G~-l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA-GA-LSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc-cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222357899998886544 4578999999999999988776531 11 1122222222234456677777777773 2
Q ss_pred h---hhHHHHHHHHHHhcc-ccchhhhhhHHHHHHHhhccCChhhHHHHH
Q 009182 351 L---QHFRQLVVFLVHNFR-VDNSLLEKRGALIIRRLCVLLDAERVYREL 396 (541)
Q Consensus 351 ~---~~f~~~m~~LL~~~~-~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l 396 (541)
. .|+-..++-|..+|+ .|++.+|.+.--.-|-.|.......-+.++
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql 376 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQL 376 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHH
Confidence 2 344455566666774 667777776444444444444443333333
No 131
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.75 E-value=0.0073 Score=56.28 Aligned_cols=94 Identities=12% Similarity=0.260 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-cCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~-~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
.|+++.+|++.+.+++.+.-.|..|...+.++.+. +++.++|.+|++++.+-.++...+++|...+.++...+...-..
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 47899999999999999888899999999999988 88899999999999999999999999998888888877322111
Q ss_pred CCCCC--ChHhHHHHHH
Q 009182 271 PADGF--DVGPILSIAT 285 (541)
Q Consensus 271 ~~~~~--~l~~il~~L~ 285 (541)
.|.++ .+.+++|++.
T Consensus 114 vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLN 130 (183)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 12222 3577777776
No 132
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.36 Score=50.97 Aligned_cols=305 Identities=14% Similarity=0.130 Sum_probs=186.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHh-chhhhhHHHHHHHH--------HH-HhhcCCCHHHHHHH-HHHHHHHh---Hhhcc--
Q 009182 43 DQDSRVRYYACEALYNIAKVV-RGDFIIFFNQIFDA--------LC-KLSADSDANVQSAA-HLLDRLVK---DIVTE-- 106 (541)
Q Consensus 43 D~d~~VR~~A~eaL~~i~k~~-~~~~~~~~~~i~~~--------L~-kl~~D~d~~VR~~A-~~L~~l~k---di~~e-- 106 (541)
....+||..|.-.+....+.. +..+-.||...||- |. -.+.|+++..|.-| ..+.+++. ..++.
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 456889999988888877776 44555777766653 11 24689999999888 65555543 22211
Q ss_pred -cc-----hhcH------hhhHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCCCch--hhhchHHHHHHHHHHcCCCCHHH
Q 009182 107 -SD-----QFSI------EEFIPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEI 171 (541)
Q Consensus 107 -~~-----~~~l------~~~iP~L~e-~l~d~~~~vR~~a~~~l~~L~~~~~~~--l~~~lp~~L~~L~~lL~D~~~eV 171 (541)
.+ .|++ -..-..|.. ....-.|.+-..++.++.++.+..+-+ -+.++-++...+-+++...++.|
T Consensus 87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v 166 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNV 166 (728)
T ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 01 1111 111111221 223345777777888888888776644 23566677777888888888899
Q ss_pred HHHHHHHHHHHHHHhcCCC----------C------------------CChHHHHHH-----------------------
Q 009182 172 RQQADSALWEFLQEIKNSP----------S------------------VDYGRMAEI----------------------- 200 (541)
Q Consensus 172 R~~a~~~L~~ll~~i~~~~----------~------------------~~~~~ii~~----------------------- 200 (541)
|..+...++.++..-+-.+ + ++-+...+.
T Consensus 167 ~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~ 246 (728)
T KOG4535|consen 167 RVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVV 246 (728)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeee
Confidence 9988888777764332110 0 000011100
Q ss_pred -----------HHHhcCC--CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 009182 201 -----------LVQRAAS--PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (541)
Q Consensus 201 -----------Ll~~~~~--~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~ 267 (541)
...+... ....+|++|+.-+..++...+- ..-|+-++.-++-.++.+.+|++...+.++..++...
T Consensus 247 ~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~-~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~ 325 (728)
T KOG4535|consen 247 LPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSM-TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTG 325 (728)
T ss_pred cCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHH
Confidence 0000000 0125788888877777665442 2347888999999999999999998888777665422
Q ss_pred hc-CC---------------------C-----------------------------CCCC--hHhHHHHHHHhcC-CCCH
Q 009182 268 KA-DP---------------------A-----------------------------DGFD--VGPILSIATRQLS-SEWE 293 (541)
Q Consensus 268 i~-~~---------------------~-----------------------------~~~~--l~~il~~L~~~L~-~~~~ 293 (541)
.. .. + ++++ -....+....... +++-
T Consensus 326 lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~ 405 (728)
T KOG4535|consen 326 LIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNR 405 (728)
T ss_pred HhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHH
Confidence 11 00 0 0111 1233444444453 3445
Q ss_pred HHHHHHHHHHHHHHhh-ChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 294 ATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 294 ~~R~aal~wL~~L~~~-~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
.+|.+|++.++.+.-+ +-.....+..+-+..++..+.|++-++|.++.|+++.|+
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnIT 461 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNIT 461 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhH
Confidence 5788888877643322 223334567778888999999999999999999999998
No 133
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=1.4 Score=49.01 Aligned_cols=354 Identities=16% Similarity=0.181 Sum_probs=191.0
Q ss_pred HHHHHHHhhhhhhcchhhhhcchhHH-HHhhc-----------CCCCHHHHHHH------------HHHHHHHHHHhchh
Q 009182 11 IIVEQFLLYADLFFYSETILQQIVPP-VLNSF-----------SDQDSRVRYYA------------CEALYNIAKVVRGD 66 (541)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~ii~~-vl~~l-----------~D~d~~VR~~A------------~eaL~~i~k~~~~~ 66 (541)
..+|+|...-....-.+++++.|+.. +..++ .||+.-+|++- +..+..+.+.-|++
T Consensus 324 ~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke 403 (970)
T COG5656 324 FFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKE 403 (970)
T ss_pred HHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccch
Confidence 35788876555666678888887744 33433 26666677652 22222233322332
Q ss_pred -----hhhHHHHHHHHHHHhhcCCC-HHH--HHHH-HHHHHHHhHhhcccch--hcH-hhhHHHHHHHhcCCCHHHHHHH
Q 009182 67 -----FIIFFNQIFDALCKLSADSD-ANV--QSAA-HLLDRLVKDIVTESDQ--FSI-EEFIPLLRERMNVLNPYVRQFL 134 (541)
Q Consensus 67 -----~~~~~~~i~~~L~kl~~D~d-~~V--R~~A-~~L~~l~kdi~~e~~~--~~l-~~~iP~L~e~l~d~~~~vR~~a 134 (541)
++++...++..- ..++++ .+. .+|| ..++.+ ++++++... .-+ ..++|.+.-.++++--..|.-+
T Consensus 404 ~TfqgiLsf~~sil~qs--aa~psn~dnarq~egalr~lasi-~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Sra 480 (970)
T COG5656 404 ETFQGILSFLLSILGQS--AATPSNIDNARQAEGALRLLASI-KSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRA 480 (970)
T ss_pred hhhhhHHHHHHHHHhcc--cCCCCccccHHHHhhHHHHHHHH-HHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHH
Confidence 233333332211 233444 233 3444 334444 335554211 001 1223444445566777888889
Q ss_pred HHHHHHhhcC-CCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC--CCChHHHHHHHHHhcCCCCHH
Q 009182 135 VGWITVLDSV-PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPDEF 211 (541)
Q Consensus 135 ~~~l~~L~~~-~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~--~~~~~~ii~~Ll~~~~~~~~~ 211 (541)
|..++.+..- ++. ..+-...++..+++.|++..|+.+|+-++.-|+..-..+. ..+++.++..++...++-+-.
T Consensus 481 ce~is~~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD 557 (970)
T COG5656 481 CEFISTIEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEID 557 (970)
T ss_pred HHHHHHHHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccch
Confidence 9999888322 222 3455778888899999999999999999998886432211 224566666666655554433
Q ss_pred HHHHHHHHHHHHHhhcCcCcccchhhHHHHHhh----hcCC----C---C---hhHHHHHHHHHHHHHHhhcCCCCCCC-
Q 009182 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILP----CISD----K---E---EKIRVVARETNEELRAIKADPADGFD- 276 (541)
Q Consensus 212 vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~----~l~d----~---~---~~iR~~A~~~~~~L~~~i~~~~~~~~- 276 (541)
+-..+ +.++++-.++.+.||-|++...+.. .+.+ + . ++..-+|...+.++..++.+-.+..+
T Consensus 558 ~LS~v---Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~v 634 (970)
T COG5656 558 PLSMV---MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLV 634 (970)
T ss_pred HHHHH---HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 33333 3455666777888888888776555 2211 1 1 22222344444444444433211111
Q ss_pred ----hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHh---
Q 009182 277 ----VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIA--- 348 (541)
Q Consensus 277 ----l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~-~V~~~~~~~L~~i~--- 348 (541)
.....|+..=.+.++....-..|+..+-...- ...++.|....++.-+.+++.|+.. .-...+.-++..+.
T Consensus 635 Lk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf-~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 635 LKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF-MSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG 713 (970)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH-HHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence 13445666666666666655556654432211 2345667778888899999998875 22334445555554
Q ss_pred ----cchhhHHHHHHHHHH-hccccchhhhh
Q 009182 349 ----KDLQHFRQLVVFLVH-NFRVDNSLLEK 374 (541)
Q Consensus 349 ----~~~~~f~~~m~~LL~-~~~~~~~ll~~ 374 (541)
...+.+.+++-.+.+ .+-++..-++.
T Consensus 714 ~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D 744 (970)
T COG5656 714 KTEFMDAGIYGSICSEISKLCLCSEENFLED 744 (970)
T ss_pred ccccccccchhHHHHHHHHHHHcchhhhHHH
Confidence 134556666666665 33333333333
No 134
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.16 Score=56.43 Aligned_cols=274 Identities=14% Similarity=0.152 Sum_probs=131.1
Q ss_pred hcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHh
Q 009182 23 FFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK 101 (541)
Q Consensus 23 ~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~k 101 (541)
+.+.......+.+-+-.|+..++-.|-+-|+.++.++......+..+ .+..|.-+++.|.+..|.+| ..|.++..
T Consensus 236 l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 236 LKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred hhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34434445556677778888888889998888877655433333322 45556667899999999999 77777644
Q ss_pred Hhhc--------------ccc----------------hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 009182 102 DIVT--------------ESD----------------QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (541)
Q Consensus 102 di~~--------------e~~----------------~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~ 151 (541)
.+.. +.+ +-+++.++..+...+.|-+.+.+..++..+..++..-+..-..
T Consensus 312 ~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~ 391 (865)
T KOG1078|consen 312 KHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTV 391 (865)
T ss_pred hCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHH
Confidence 3322 110 1122222222222222222222222222332222222111111
Q ss_pred chHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 152 FLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 152 ~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
+ +.-|.++|.+ ..-+-++....++...+++........+.++...+..+-. +.-+...++-+..-+|..
T Consensus 392 ~----m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~------~~i~~rILhlLG~EgP~a 461 (865)
T KOG1078|consen 392 M----MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEF------TQIAVRILHLLGKEGPKA 461 (865)
T ss_pred H----HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccc------hHHHHHHHHHHhccCCCC
Confidence 1 1111122222 2223333333443333333221111122333333322211 111222222222223322
Q ss_pred cccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC
Q 009182 231 LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (541)
Q Consensus 231 l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~ 310 (541)
-.| ++-+..+.+-..-.+.-+|.+|..++.++. .+ .....+.+...+.+.+.+.+.++|..|--.+..+-+..
T Consensus 462 ~~P--skyir~iyNRviLEn~ivRaaAv~alaKfg--~~---~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 462 PNP--SKYIRFIYNRVILENAIVRAAAVSALAKFG--AQ---DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred CCc--chhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cC---CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 222 122333333333345667878877777664 11 12335677777888889999999999998888887665
Q ss_pred hHHHhhh
Q 009182 311 RTEVLHF 317 (541)
Q Consensus 311 ~~~i~~~ 317 (541)
..-..++
T Consensus 535 ~~l~~~~ 541 (865)
T KOG1078|consen 535 DVLNQNY 541 (865)
T ss_pred hhhcccc
Confidence 5444443
No 135
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.64 E-value=0.027 Score=52.75 Aligned_cols=139 Identities=21% Similarity=0.272 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHh-chhhhhHHHHHHHHH------------HHhhcCCCHHHHHHH-HHHHHHHhHh---hc---c
Q 009182 47 RVRYYACEALYNIAKVV-RGDFIIFFNQIFDAL------------CKLSADSDANVQSAA-HLLDRLVKDI---VT---E 106 (541)
Q Consensus 47 ~VR~~A~eaL~~i~k~~-~~~~~~~~~~i~~~L------------~kl~~D~d~~VR~~A-~~L~~l~kdi---~~---e 106 (541)
+||..|..++..+++.. +..+..||..+||.- .-++.||++.||.+| ..+..+++.. .. +
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 58999999999999985 567789999999876 126789999999999 7777665421 11 1
Q ss_pred cc----h-----hcHhhhHHHHH----HHhcC-CCHHHHHHHHHHHHHhhcCCCch-h-hhchHHHHHHHHHHcCCCCHH
Q 009182 107 SD----Q-----FSIEEFIPLLR----ERMNV-LNPYVRQFLVGWITVLDSVPDID-M-LGFLPDFLDGLFNMLSDSSHE 170 (541)
Q Consensus 107 ~~----~-----~~l~~~iP~L~----e~l~d-~~~~vR~~a~~~l~~L~~~~~~~-l-~~~lp~~L~~L~~lL~D~~~e 170 (541)
.+ . ..+...+-.+. ..+.. .++.+-..++.++..+.+..+-+ + ..++++++..+...+.+.+++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 1 12333333333 23333 57778888889998887765532 1 257788888888899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009182 171 IRQQADSALWEFLQE 185 (541)
Q Consensus 171 VR~~a~~~L~~ll~~ 185 (541)
||.++..+++.++..
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999888743
No 136
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.64 E-value=0.14 Score=47.33 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=91.7
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHhhcCCCH-HHHHHH-HHHHHHHhHh
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDA-NVQSAA-HLLDRLVKDI 103 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~-~~~~~i~~~L~kl~~D~d~-~VR~~A-~~L~~l~kdi 103 (541)
+.-+...+..+.+.+++++++-|..++.-+..+++.++.+++ .+-..-+..+.+.++.+++ .++++| ..+.+++.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~-- 97 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD-- 97 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--
Confidence 567788888999999999999999999888888887755554 5555666777776665554 556666 55555443
Q ss_pred hcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 104 ~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
+++....-+|+. ..+.+|.++..+++++.| ..+...+..+|..++
T Consensus 98 ------------------~~~~~p~l~Rei---------------~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 98 ------------------LIRGKPTLTREI---------------ATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred ------------------HhcCCCchHHHH---------------hhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 223222334442 237788888888888877 666777778888887
Q ss_pred HHhcCCCCCChHHHHHH
Q 009182 184 QEIKNSPSVDYGRMAEI 200 (541)
Q Consensus 184 ~~i~~~~~~~~~~ii~~ 200 (541)
........++..++-..
T Consensus 143 ~~~ptt~rp~~~ki~~~ 159 (165)
T PF08167_consen 143 PHHPTTFRPFANKIESA 159 (165)
T ss_pred HHCCccccchHHHHHHH
Confidence 76554444444444333
No 137
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.63 E-value=0.35 Score=50.74 Aligned_cols=232 Identities=18% Similarity=0.187 Sum_probs=147.6
Q ss_pred hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-chh--hhchHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHH
Q 009182 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDM--LGFLPDFLDGLFNMLSDSSHEI-RQQADSALWEFLQ 184 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~-~~l--~~~lp~~L~~L~~lL~D~~~eV-R~~a~~~L~~ll~ 184 (541)
+..+..+.+.+...+-+++..||..+...+.-+..-.. ... ..+++.|+- ..+-.|.+.++ |.+|-+....+++
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii--~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFII--RSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhH--hhhcccCCChHHHHHHHHHHHHHHH
Confidence 34566677777766667779999999999876554432 111 112332221 13445665555 9999999888875
Q ss_pred HhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 185 ~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
. ++.+..--..++..++....++++..|..|++.+.|++-..|+-+. -..=+..++..+.|...+ .+......+
T Consensus 98 ~-~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~--~~gG~~~L~~~l~d~~~~---~~~~l~~~l 171 (371)
T PF14664_consen 98 I-KKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA--ECGGIRVLLRALIDGSFS---ISESLLDTL 171 (371)
T ss_pred h-cCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH--HcCCHHHHHHHHHhccHh---HHHHHHHHH
Confidence 4 2221112367889999999999999999999999998766554321 223346666777664444 445556666
Q ss_pred HHhhcCCC------CCCChHhHHHHHHHh----cCCCCHHHHH-HHHHHHHHHHhhChHHHh-hhhH-HHHHHHHHhcCC
Q 009182 265 RAIKADPA------DGFDVGPILSIATRQ----LSSEWEATRI-EALHWISTLLNRHRTEVL-HFLN-DIFDTLLKALSD 331 (541)
Q Consensus 265 ~~~i~~~~------~~~~l~~il~~L~~~----L~~~~~~~R~-aal~wL~~L~~~~~~~i~-~~l~-~l~p~Ll~~L~D 331 (541)
+.+..... .+.|++.++...++. ..++....|. ++-..+..+...-++-+. ..-+ +-+..++..|.-
T Consensus 172 L~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~ 251 (371)
T PF14664_consen 172 LYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL 251 (371)
T ss_pred HHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC
Confidence 66655432 246777887777766 2222221243 444566666666555431 1111 567788999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 009182 332 PSDEVVLLVLEVHACIA 348 (541)
Q Consensus 332 ~~~~V~~~~~~~L~~i~ 348 (541)
|.+++|...+.++-.+.
T Consensus 252 p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 252 PNPEIRKAILDLLFDLL 268 (371)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988877
No 138
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.61 E-value=0.25 Score=61.05 Aligned_cols=237 Identities=13% Similarity=0.140 Sum_probs=140.4
Q ss_pred hhcchhHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc-
Q 009182 29 ILQQIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT- 105 (541)
Q Consensus 29 ~l~~ii~~vl~~l-~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~- 105 (541)
+-++++.|....+ ...+..||....+++.++.....+.+-.-|+.||..+.....|.++.+-.-| +.+..++++...
T Consensus 1179 FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~ 1258 (1780)
T PLN03076 1179 FQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPY 1258 (1780)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhh
Confidence 3455666665544 3557799999999999999887777888899999999988888888777777 777777766443
Q ss_pred --ccchhcHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHh----hcC--C------------------------------C
Q 009182 106 --ESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVL----DSV--P------------------------------D 146 (541)
Q Consensus 106 --e~~~~~l~~~iP~L~e~l~d~-~~~vR~~a~~~l~~L----~~~--~------------------------------~ 146 (541)
+........+|-.+.++.+.. ++.+-..+++.+..+ ... . .
T Consensus 1259 l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1338 (1780)
T PLN03076 1259 ITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDK 1338 (1780)
T ss_pred ccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 211223445555665555432 344444444444322 000 0 0
Q ss_pred chhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC-----hHHHHHHHHHhcCC--------------
Q 009182 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-----YGRMAEILVQRAAS-------------- 207 (541)
Q Consensus 147 ~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~-----~~~ii~~Ll~~~~~-------------- 207 (541)
.+...+.=-+|.+|..+..|..+|||..|.+.|-+.+...|....+. +..++--+...++.
T Consensus 1339 ~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~ 1418 (1780)
T PLN03076 1339 DDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQG 1418 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 00111111234455567789999999999988888887766544332 34444333332211
Q ss_pred ----CC-HH----HHHHHHHHHHHHHhhc---CcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 208 ----PD-EF----TRLTAITWINEFVKLG---GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 208 ----~~-~~----vr~~al~wL~~l~~~~---~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
.+ .+ ...++...+..++++. =+.+.+.+++++..+..|+..++..+-..+..+...|.
T Consensus 1419 ~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1419 VDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 00 01 1223323333333322 13344567777888888888777777667777766664
No 139
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.057 Score=59.40 Aligned_cols=176 Identities=21% Similarity=0.209 Sum_probs=107.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHH-hhcCCCHHHHHHH-HHHHHHHhHhhcccchhcH
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~k-l~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l 112 (541)
+-+-..+.|+|+-.||...-++. ++.+..+. +.++..|.. .++|++-+||.+| .++.-.|- . +...+
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~a-lAy~GTgn-----nkair~lLh~aVsD~nDDVrRaAVialGFVl~----~-dp~~~ 590 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLA-LAYVGTGN-----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF----R-DPEQL 590 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHH-HHHhccCc-----hhhHHHhhcccccccchHHHHHHHHHheeeEe----c-Chhhc
Confidence 44566788999999998764433 22221122 234444554 3899999999999 76654332 1 11112
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~ 192 (541)
...+..|. .+-||+||+.+.-+++..+.-.|.. .-+ .++ =.+.+|+..-||+.|+-+++-++-..-....+
T Consensus 591 ~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~--eAi-~lL---epl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 591 PSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLK--EAI-NLL---EPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred hHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcH--HHH-HHH---hhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 22333333 3468999999999999877666542 111 122 23677999999999988877666443333345
Q ss_pred ChHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHhhcCcCc
Q 009182 193 DYGRMAEILVQRAASPDEF--TRLTAITWINEFVKLGGDQL 231 (541)
Q Consensus 193 ~~~~ii~~Ll~~~~~~~~~--vr~~al~wL~~l~~~~~~~l 231 (541)
.+..+...+.+-+.++++. ++..|+-.=+ +.+.+|.+.
T Consensus 662 kv~~frk~l~kvI~dKhEd~~aK~GAilAqG-ildaGGrNv 701 (929)
T KOG2062|consen 662 KVNGFRKQLEKVINDKHEDGMAKFGAILAQG-ILDAGGRNV 701 (929)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh-hhhcCCceE
Confidence 6777777777777666544 4666663333 345566544
No 140
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.58 E-value=0.58 Score=53.21 Aligned_cols=110 Identities=11% Similarity=0.149 Sum_probs=66.9
Q ss_pred hHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc------ch
Q 009182 279 PILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DL 351 (541)
Q Consensus 279 ~il~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~------~~ 351 (541)
..+|.+.++|. ++....|-....+++-+...+ ....+.++|.+-.+|+||++-||..++-.|+++-+ +.
T Consensus 968 r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G 1043 (1529)
T KOG0413|consen 968 RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNG 1043 (1529)
T ss_pred HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcch
Confidence 36777777774 344556666555555544433 23467899999999999999999999999999774 23
Q ss_pred hhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHH
Q 009182 352 QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYREL 396 (541)
Q Consensus 352 ~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l 396 (541)
.-|-.||-.+++. +++ ...-|.|.|-.+=+.=+|--.|..|
T Consensus 1044 ~Lf~Rf~l~l~D~---~ed-Ir~~a~f~~~~vL~~~~P~~f~~~F 1084 (1529)
T KOG0413|consen 1044 ELFIRFMLALLDA---NED-IRNDAKFYISEVLQSEEPNFFPLNF 1084 (1529)
T ss_pred hhHHHHHHHHccc---CHH-HHHHHHHHHHHHHhhcCccchHHHH
Confidence 4455555555433 222 1234555554443333333333333
No 141
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.57 E-value=0.0039 Score=40.48 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 156 ~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
++|.++++++|++++||.+|..+++.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46777889999999999999999999875
No 142
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.042 Score=60.07 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-----hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-C
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-----MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN-S 189 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-----l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~-~ 189 (541)
=|.+...++.+|..||..|...+-.+-.+.+.| +-..+..=...+.++|+|+.++||..|...+......+=. .
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 477788889999999999999988877765544 3345555566677999999999999887665544433310 0
Q ss_pred CCCChHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 009182 190 PSVDYGRMAEILVQR-AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~-~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~ 262 (541)
|..-+..++.++..- ..+...+||.....++.+++.. +.-.|-+..++|.+=+.|.|+...||-++.+..-
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 111123344444332 3345668999999999988654 3355678899999999999999999988766543
No 143
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.48 E-value=0.44 Score=47.55 Aligned_cols=203 Identities=20% Similarity=0.215 Sum_probs=121.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHhhcccchhcHhh
Q 009182 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEE 114 (541)
Q Consensus 37 vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~--~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi~~e~~~~~l~~ 114 (541)
+-.+++|+|+.+|.-|.+.|.++.....+..+ ...+-+++-++.-++|... +..+..++.++.+ . ..-+......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~l~gl~~L~~-~-~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPALKGLLALVK-M-KNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHHHHHHHHHHh-C-cCCChhhHHH
Confidence 45678899999999999999888877654322 2234455555555655543 5544466666653 1 1111112344
Q ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCC-
Q 009182 115 FIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSP- 190 (541)
Q Consensus 115 ~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~~- 190 (541)
++..+.+.... ....+|..+.+.+..+.+.....+...-++|+.++++.... .+|.-=-.+-+.+..+++.+....
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 45555443332 34678999999998887666555555556777777765532 233222222233333333322110
Q ss_pred -----------------------------------------CCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 009182 191 -----------------------------------------SVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (541)
Q Consensus 191 -----------------------------------------~~~~-~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~ 228 (541)
.+.+ +..+|.+++.+.++.+.++.-++..+...+...|
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 1223 4678888888888888888888888877665544
Q ss_pred -cCcccchhhHHHHH
Q 009182 229 -DQLVPYYADILGAI 242 (541)
Q Consensus 229 -~~l~p~l~~llp~l 242 (541)
..+.||...+...+
T Consensus 241 ~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 241 ADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 45777777777655
No 144
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=2.7 Score=49.22 Aligned_cols=106 Identities=25% Similarity=0.284 Sum_probs=79.8
Q ss_pred hhcCCCHHHHHHH-HHHHHHHhHhhccc----chhcHh-hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchH
Q 009182 81 LSADSDANVQSAA-HLLDRLVKDIVTES----DQFSIE-EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP 154 (541)
Q Consensus 81 l~~D~d~~VR~~A-~~L~~l~kdi~~e~----~~~~l~-~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp 154 (541)
+++...-..|++. +.+.++......+. ....+. .++..|.+++.|.++.||.-+++....+....... .....
T Consensus 320 lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p-~~~~~ 398 (1251)
T KOG0414|consen 320 LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIP-LGSRT 398 (1251)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCC-ccHHH
Confidence 4556666889988 77766654444321 123333 48999999999999999999999988776543321 25567
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 155 ~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
+++.+.+..+.|-+.-||+.|.+.+..++...+
T Consensus 399 eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 399 EVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 888889999999999999999999999987654
No 145
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.44 E-value=0.035 Score=64.20 Aligned_cols=232 Identities=17% Similarity=0.126 Sum_probs=149.8
Q ss_pred hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh-chHHHHHHHH---------HHcCCC-CHHHHHHHHH
Q 009182 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLF---------NMLSDS-SHEIRQQADS 177 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~-~lp~~L~~L~---------~lL~D~-~~eVR~~a~~ 177 (541)
......|+..|.+-+-++++++|..+.-.+..+.+..+..... .+.+++-.+. ++.+|+ ...||+++.+
T Consensus 72 ~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq 151 (1549)
T KOG0392|consen 72 QWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQ 151 (1549)
T ss_pred cccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHH
Confidence 4567788888888888999999999999988887766544322 1222221111 233343 3578999999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHH
Q 009182 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVA 257 (541)
Q Consensus 178 ~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A 257 (541)
+|+.+++... ..-+...++++.+.+..++|++|..-+..+.....+-.+.+...++.+++.+...+.|++.++|..|
T Consensus 152 ~L~~~l~~~~---~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 152 ALGAYLKHMD---ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHHHHHhhh---hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 9999987553 1236788889999999999999999888888877766666667888999999999999999999988
Q ss_pred HHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhChHH-H------hhhhHHHHHHHHH
Q 009182 258 RETNEELRAIKADPADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTE-V------LHFLNDIFDTLLK 327 (541)
Q Consensus 258 ~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~---~~~~~~R~aal~wL~~L~~~~~~~-i------~~~l~~l~p~Ll~ 327 (541)
.+.+........+. ....+..++..+...+. +-.+.+ +.+. ..+.+.|-.. + .+....++|-++.
T Consensus 229 a~~l~~~~s~~v~l-~~~~i~~lv~~l~~~l~~lddl~~s~--~si~--~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p 303 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKL-MVQKIAKLVHTLWSFLLELDDLSSST--ASIM--HLLDELCIENEVLDLFEQQNLEVGLVPRLWP 303 (1549)
T ss_pred HHHhhhhhHHHHhh-hHhHHHHHHHHHHHHHHHhhhcchhh--HHHH--HHHHHHhhhHHHHHHHHHhhhhhccchhhHH
Confidence 88765543222110 01123444554444432 111110 0010 1111111110 1 1112356777777
Q ss_pred hcCCCCHHHHHHHHHHHHHHh
Q 009182 328 ALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 328 ~L~D~~~~V~~~~~~~L~~i~ 348 (541)
.++..-..||..+++++..+.
T Consensus 304 ~l~~~i~sv~~a~l~~l~~ll 324 (1549)
T KOG0392|consen 304 FLRHTISSVRRAALETLAMLL 324 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888998888887
No 146
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.33 Score=48.94 Aligned_cols=275 Identities=12% Similarity=0.086 Sum_probs=158.6
Q ss_pred HHHHHHHHHhhcCC-CchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC-----hHHHHHHHHHhc
Q 009182 132 QFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-----YGRMAEILVQRA 205 (541)
Q Consensus 132 ~~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~-----~~~ii~~Ll~~~ 205 (541)
..+++++.++-+.. |. ...|.+++.|..-|..++..|+..+++.++.+++......-.. -..+.+.++.++
T Consensus 61 tlcVscLERLfkakega---hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEGA---HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred hhHHHHHHHHHhhccch---hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence 34888888876543 44 4566677777777777888999999999999987654221001 256888899999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH----H----HhhcCCCC---C
Q 009182 206 ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL----R----AIKADPAD---G 274 (541)
Q Consensus 206 ~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L----~----~~i~~~~~---~ 274 (541)
...|.+|..+|+.-|..++. +|.-+.++++.=.-.+-..|+.|.++|+-. + +...-... +
T Consensus 138 ggeddeVAkAAiesikrial---------fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesane 208 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIAL---------FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANE 208 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHh---------cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhH
Confidence 99999999999988887654 466666666643333445677777766421 1 21111111 1
Q ss_pred CChHhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcc-
Q 009182 275 FDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS--DPSDEVVLLVLEVHACIAKD- 350 (541)
Q Consensus 275 ~~l~~il~~L~~~L~~-~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~--D~~~~V~~~~~~~L~~i~~~- 350 (541)
..-..++..|...+.. ++..+|..++.....+++.-.+.-.--.+.++..+.+..+ |.+|--...++.-.+++.++
T Consensus 209 ckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgke 288 (524)
T KOG4413|consen 209 CKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKE 288 (524)
T ss_pred hhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcch
Confidence 1124677778888855 7788999999988888876543321112334444444443 44443334444433433321
Q ss_pred ----------hhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhc---------cCChhhHHHHHHHHhcccCChHHHHH
Q 009182 351 ----------LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCV---------LLDAERVYRELSTILEGEADLDFACT 411 (541)
Q Consensus 351 ----------~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~---------~l~~e~i~~~l~~il~~~~d~~f~~~ 411 (541)
-+-+.-++.+-++++..+..-..+.+-.-+-+|+. ..|+.+..+-++.+.......+. ..
T Consensus 289 aimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakq-ea 367 (524)
T KOG4413|consen 289 AIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQ-EA 367 (524)
T ss_pred HHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchH-HH
Confidence 12345566777777753332222222333333333 33444555566666655444322 23
Q ss_pred HHHHhHHh
Q 009182 412 MVQALNLI 419 (541)
Q Consensus 412 ~v~~L~~i 419 (541)
-++.|..|
T Consensus 368 aihaLaaI 375 (524)
T KOG4413|consen 368 AIHALAAI 375 (524)
T ss_pred HHHHHHHh
Confidence 34444444
No 147
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.069 Score=58.77 Aligned_cols=152 Identities=20% Similarity=0.162 Sum_probs=104.0
Q ss_pred HhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHH
Q 009182 80 KLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFL 157 (541)
Q Consensus 80 kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~-l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L 157 (541)
+++.|.||-.|.++ ..+. +.-..+. + ++.|..|... +.|.|.+||..++-.|+.+..--+ +-+
T Consensus 526 el~~dkdpilR~~Gm~t~a--lAy~GTg--n---nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~ 590 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLA--LAYVGTG--N---NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQL 590 (929)
T ss_pred HHhcCCchhhhhhhHHHHH--HHHhccC--c---hhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhc
Confidence 36677777777666 2211 1101111 1 2335555444 789999999999999997654332 334
Q ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchh
Q 009182 158 DGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (541)
Q Consensus 158 ~~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~ 236 (541)
++...+|+++ |+-||-.++-+|+..+..-| ...-+..|-..+.|+...||+.|+-.+.-+.-...+...|-..
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG------~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTG------LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCC------cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence 5555689887 79999999999998885433 5566677777778999999999997777554445556667777
Q ss_pred hHHHHHhhhcCCCChh
Q 009182 237 DILGAILPCISDKEEK 252 (541)
Q Consensus 237 ~llp~ll~~l~d~~~~ 252 (541)
.+-..+.+-+.|.+.+
T Consensus 665 ~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHED 680 (929)
T ss_pred HHHHHHHHHhhhhhhH
Confidence 7778888888776655
No 148
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=3 Score=47.82 Aligned_cols=229 Identities=17% Similarity=0.185 Sum_probs=140.8
Q ss_pred HHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC-----hHHHHHHHHHhcCCC
Q 009182 134 LVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-----YGRMAEILVQRAASP 208 (541)
Q Consensus 134 a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~-----~~~ii~~Ll~~~~~~ 208 (541)
++..|+.++...|.++...+-..+=.++.-+.++++.|+..|..|+-.....++...-++ .+-+++.+-.+.+..
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 456677788888888877777777777778899999999999999998888776321111 233344443334322
Q ss_pred --CHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCC--h----------hHHHHH-----------------
Q 009182 209 --DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE--E----------KIRVVA----------------- 257 (541)
Q Consensus 209 --~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~--~----------~iR~~A----------------- 257 (541)
.+.+... +.......+....|++..++..+...+.+-+ + -+|..+
T Consensus 648 ~~s~~~~~V----l~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~ 723 (1014)
T KOG4524|consen 648 GMSPRVPDV----LMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHI 723 (1014)
T ss_pred CCCchhHHH----HHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 2222211 2223344555667777777776666554311 1 011111
Q ss_pred ---HHHHHH--------------HH---------HhhcC------C---------------CCCCC-----------hHh
Q 009182 258 ---RETNEE--------------LR---------AIKAD------P---------------ADGFD-----------VGP 279 (541)
Q Consensus 258 ---~~~~~~--------------L~---------~~i~~------~---------------~~~~~-----------l~~ 279 (541)
.+.... .. +.+.+ + ++..| ...
T Consensus 724 ~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~k 803 (1014)
T KOG4524|consen 724 SQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLK 803 (1014)
T ss_pred HHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHH
Confidence 000000 00 00000 0 00111 124
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH---HHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc------
Q 009182 280 ILSIATRQLSSEWEATRIEALHWIS---TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD------ 350 (541)
Q Consensus 280 il~~L~~~L~~~~~~~R~aal~wL~---~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~------ 350 (541)
|+......+.+++-..|+++|..+. -+....++.+.|...+..|.++..+.+++|.++..+++++-.+++.
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455566678889999999999885 5666778899999999999999999999999999999888888742
Q ss_pred hhhHHHHHHHHHHhcc
Q 009182 351 LQHFRQLVVFLVHNFR 366 (541)
Q Consensus 351 ~~~f~~~m~~LL~~~~ 366 (541)
..+.+.|++.+-..+.
T Consensus 884 sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2344555555554444
No 149
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.27 E-value=0.64 Score=45.63 Aligned_cols=190 Identities=19% Similarity=0.152 Sum_probs=108.4
Q ss_pred HHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHH------HHHHHHHhhcC
Q 009182 157 LDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAI------TWINEFVKLGG 228 (541)
Q Consensus 157 L~~L~~lL~D~~--~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al------~wL~~l~~~~~ 228 (541)
++.+...+.|.+ +-||-+|..+|+.+. .....+++-+..+++-..||.++. .|.+...+.
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-- 136 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-- 136 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc--
Confidence 455556888865 568999999988775 233455555555677777776643 455544432
Q ss_pred cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCh--HhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009182 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV--GPILSIATRQLSSEWEATRIEALHWISTL 306 (541)
Q Consensus 229 ~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l--~~il~~L~~~L~~~~~~~R~aal~wL~~L 306 (541)
.+-.||.+ .=|.- +....+..++|..-.+....+.+--..--.--+. +.-+.++.+.+..++...|-.+...+|.+
T Consensus 137 ~~~~p~~S-vdPa~-p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl 214 (289)
T KOG0567|consen 137 ANSSPYIS-VDPAP-PANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQL 214 (289)
T ss_pred cccCcccc-CCCCC-ccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhc
Confidence 11223321 10000 0000112233322222222221100000000022 57788999999888888899999888877
Q ss_pred HhhChHHHhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhh
Q 009182 307 LNRHRTEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (541)
Q Consensus 307 ~~~~~~~i~~~l~~l~p~Ll~~L~D~--~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r 375 (541)
-.. .-+|.|.+.|.|. .+.||+.+.++|+.|+. ++-++.|-+...++.+.+.+.
T Consensus 215 ~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----e~~~~vL~e~~~D~~~vv~es 270 (289)
T KOG0567|consen 215 QSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----EDCVEVLKEYLGDEERVVRES 270 (289)
T ss_pred cch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----HHHHHHHHHHcCCcHHHHHHH
Confidence 654 3577788888876 68999999999999995 344444444555555555544
No 150
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=3.2 Score=46.66 Aligned_cols=212 Identities=12% Similarity=0.087 Sum_probs=119.9
Q ss_pred chHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCCC---CChHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhh
Q 009182 152 FLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPS---VDYGRMAEILVQRAAS-PDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 152 ~lp~~L~~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~~~~~---~~~~~ii~~Ll~~~~~-~~~~vr~~al~wL~~l~~~ 226 (541)
.-|.....+++++.|. +..||-++...+...+....-..+ +.++++-..+.+..+. .+-..|...+.-++.+..-
T Consensus 523 ~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r 602 (978)
T KOG1993|consen 523 LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER 602 (978)
T ss_pred HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3455566677899998 778899999998888876542211 1222222222222221 1234566777888888777
Q ss_pred cCcCcccchhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC---CHHHHHHHHH
Q 009182 227 GGDQLVPYYADILGAILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE---WEATRIEALH 301 (541)
Q Consensus 227 ~~~~l~p~l~~llp~ll~~l~d--~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~---~~~~R~aal~ 301 (541)
.++.+.||..+++..+-..-.. +++=.|-+-..++..+...++..+. .-++-++|++.....-+ +..--+-+..
T Consensus 603 ~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~-~~~~fL~pVIel~~D~~sP~hv~L~EDgme 681 (978)
T KOG1993|consen 603 VSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF-EFYPFLYPVIELSTDPSSPEHVYLLEDGME 681 (978)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc-cchHHHHHHHHHhcCCCCCceeehhhhHHH
Confidence 7777778888888765544333 3444665555566666666655432 11345566665555322 2223455555
Q ss_pred HHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--cch----hhHHHHHHHHHHhcc
Q 009182 302 WISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA--KDL----QHFRQLVVFLVHNFR 366 (541)
Q Consensus 302 wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~--~~~----~~f~~~m~~LL~~~~ 366 (541)
.+++..... +.+.|-+-.++|.++..+.-+++.. ..+++.+..+. .+. .|+..+.+.+-+.+.
T Consensus 682 LW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 682 LWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred HHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 4555666677888877776555443 34555555554 222 344444444444443
No 151
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.075 Score=56.88 Aligned_cols=160 Identities=19% Similarity=0.127 Sum_probs=103.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHh-hcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhh
Q 009182 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-SADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE 114 (541)
Q Consensus 37 vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl-~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~ 114 (541)
+-..+.|.|+..||...-++.- +- ++..- ..++..|... ++|.+-+||.|| .+|.-.|.+ +. +.
T Consensus 521 I~ell~d~ds~lRy~G~fs~al-Ay-~GTgn----~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~--~~ 586 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLAL-AY-VGTGN----LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DR--DL 586 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHH-HH-hcCCc----chhHhhhheeecccCchHHHHHHHHheeeeEec------Cc--ch
Confidence 4556789999999988765442 11 12111 1334444443 899999999999 776554431 11 12
Q ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 009182 115 FIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (541)
Q Consensus 115 ~iP~L~e~l-~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~ 193 (541)
+|-..|.+ ..-|++||....-+++..+.-.|... -.+.|-.++.|++.-||+.|+-+++-++......-.+.
T Consensus 587 -lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 587 -LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred -hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 33334444 45899999999999998877766532 12333457789999999999999888876554334566
Q ss_pred hHHHHHHHHHhcCCCCH--HHHHHHH
Q 009182 194 YGRMAEILVQRAASPDE--FTRLTAI 217 (541)
Q Consensus 194 ~~~ii~~Ll~~~~~~~~--~vr~~al 217 (541)
+..|+..+..-+.++++ ..+..|+
T Consensus 660 v~~I~k~f~~vI~~Khe~glaklGA~ 685 (926)
T COG5116 660 VKRIIKKFNRVIVDKHESGLAKLGAV 685 (926)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 77788777776665543 3455554
No 152
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.09 E-value=3 Score=45.92 Aligned_cols=133 Identities=15% Similarity=0.070 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhc
Q 009182 251 EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKAL 329 (541)
Q Consensus 251 ~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~-l~~l~p~Ll~~L 329 (541)
.+.+.+|..+...+.+.+..-..+++-..+..-+.+.+.+++..+..+++-++.-+.-...+--..+ -.+.+..+.+.+
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh
Confidence 4455566666666655554322234445566666666677888888888888877666553322222 235678899999
Q ss_pred CCCCHHHHHHHHHHHHHHh-cc-----hhhHHHHHHHHHHhcccc-chhhhhhHHHHHHHh
Q 009182 330 SDPSDEVVLLVLEVHACIA-KD-----LQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRL 383 (541)
Q Consensus 330 ~D~~~~V~~~~~~~L~~i~-~~-----~~~f~~~m~~LL~~~~~~-~~ll~~r~~~iir~L 383 (541)
.|+.+.+|.++.|+|.... .+ ...+.++-..++..+-+| ..-+++-.=-..|+|
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987 21 234455555555555333 333333333366665
No 153
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.11 Score=55.64 Aligned_cols=159 Identities=20% Similarity=0.150 Sum_probs=111.6
Q ss_pred HHHHHHHH-HhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCch
Q 009182 72 NQIFDALC-KLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDID 148 (541)
Q Consensus 72 ~~i~~~L~-kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~-l~d~~~~vR~~a~~~l~~L~~~~~~~ 148 (541)
.+.++.+. +++.|.|+-.|-+. ..+.-... .+ ++ ..++..+... +.|.|.+||..++-+++.++---
T Consensus 514 qe~add~I~ell~d~ds~lRy~G~fs~alAy~--GT--gn---~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--- 583 (926)
T COG5116 514 QEMADDYINELLYDKDSILRYNGVFSLALAYV--GT--GN---LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--- 583 (926)
T ss_pred HHHHHHHHHHHhcCchHHhhhccHHHHHHHHh--cC--Cc---chhHhhhheeecccCchHHHHHHHHheeeeEecC---
Confidence 34555544 57899999999776 44322211 11 11 1224444444 78899999999999998654221
Q ss_pred hhhchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 009182 149 MLGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~ 227 (541)
+..+.+..++|+|+ ++-||-.++-+|+.++..-+ .+.-+.++-..+.|++..||+.|+-..+-+.-..
T Consensus 584 -----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 584 -----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred -----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 23455666789886 78999999999998885333 4555666777788999999999998888776667
Q ss_pred CcCcccchhhHHHHHhhhcCCCCh
Q 009182 228 GDQLVPYYADILGAILPCISDKEE 251 (541)
Q Consensus 228 ~~~l~p~l~~llp~ll~~l~d~~~ 251 (541)
.+.+.|-...|..-+...+.+.+.
T Consensus 653 n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 653 NPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred CcccChhHHHHHHHHHHHHhhhhH
Confidence 778888888888888888877543
No 154
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.05 E-value=1.2 Score=46.00 Aligned_cols=222 Identities=17% Similarity=0.230 Sum_probs=128.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC-C-------ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS-V-------DYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 155 ~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~-~-------~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~ 226 (541)
+++..|...|..-+-|.|+.++...+.+++.-..... + +.+.++..++....+++ +...+-.-+.+.++.
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d--ial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD--IALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT--THHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc--ccchHHHHHHHHHhh
Confidence 4455566677777788888888888777754221111 1 12567777777776444 555555556665442
Q ss_pred cC--cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC------CCChHhHHHHHHHhcCCCCHHHHHH
Q 009182 227 GG--DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD------GFDVGPILSIATRQLSSEWEATRIE 298 (541)
Q Consensus 227 ~~--~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~------~~~l~~il~~L~~~L~~~~~~~R~a 298 (541)
.. ..++ -+..+--+.+.+..+.-+|-.-|-.+...++ ..... ..+++.+.......+.++++.||..
T Consensus 154 e~l~~~iL--~~~~f~~ff~~~~~~~Fdiasdaf~t~~~ll---t~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 154 ESLAKIIL--YSECFWKFFKYVQLPNFDIASDAFSTFKELL---TRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHHHHHHH--TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHH---HSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHHHHHh--CcHHHHHHHHHhcCCccHhHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 11 0000 0122222455566667776544444444432 22110 1368899998888899999999999
Q ss_pred HHHHHHHHHhhChH--HHhhh--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchh---hH-------HHHHHHHHHh
Q 009182 299 ALHWISTLLNRHRT--EVLHF--LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ---HF-------RQLVVFLVHN 364 (541)
Q Consensus 299 al~wL~~L~~~~~~--~i~~~--l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~---~f-------~~~m~~LL~~ 364 (541)
+++.|+.+...-.. -|..| .+.-+..++..|+|++..++..|..++.-+..++. -- +.-+-..+.-
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999988865432 23344 45678899999999999999999999888773221 11 1122333344
Q ss_pred cc----ccchhhhhhHHHHHHHhh
Q 009182 365 FR----VDNSLLEKRGALIIRRLC 384 (541)
Q Consensus 365 ~~----~~~~ll~~r~~~iir~Lc 384 (541)
|. +|+...+++ +++|+++.
T Consensus 309 f~~~~~~D~qf~~EK-~~li~~i~ 331 (335)
T PF08569_consen 309 FHTDRTDDEQFEDEK-AYLIKQIE 331 (335)
T ss_dssp TTTT--S-CHHHHHH-HHHHHHHH
T ss_pred CCCCCCccccHHHHH-HHHHHHHH
Confidence 43 345566665 67777764
No 155
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.01 E-value=0.039 Score=60.56 Aligned_cols=188 Identities=15% Similarity=0.161 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch
Q 009182 70 FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (541)
Q Consensus 70 ~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~ 148 (541)
|-..+.|.++++.+-+|..||--- ..+++... .++ ++..-+.+.|.+...+.|.|+.+|...+..+..+++..+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~-~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID-HLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh-hcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 445689999999999999999644 33333332 222 23345678999999999999999999999999998877654
Q ss_pred hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEI-LVQRAASPDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~-Ll~~~~~~~~~vr~~al~wL~~l~~~ 226 (541)
..=.++++.+-+.-.|....+|..+.-|++..-.... +- -+.++.. ....++|+-.--|.+++..+..-.+.
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~----~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA----ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccc----hhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 3345677777777779999999998888765532211 00 1222222 22235555444566665544333332
Q ss_pred cCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 009182 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (541)
Q Consensus 227 ~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i 268 (541)
... ..--.+|+|.+.+...|.+..+|..|.++........
T Consensus 478 ~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 478 FDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred cch--hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 221 1124688999999999999999999988877765443
No 156
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.97 E-value=0.54 Score=47.83 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=90.9
Q ss_pred hhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHH
Q 009182 235 YADILG-AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE 313 (541)
Q Consensus 235 l~~llp-~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~ 313 (541)
+..++. .++|++..+++.+|+.|.++.|...= +... .-.+-++.+...+..++...|..|++.+.-+....+.+
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~----~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKE----LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 447775 45589999999999999999986632 1111 12456777777776678899999999999888887655
Q ss_pred Hhhhh---------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHhc
Q 009182 314 VLHFL---------NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH--FRQLVVFLVHNF 365 (541)
Q Consensus 314 i~~~l---------~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~--f~~~m~~LL~~~ 365 (541)
..+.. ..+...+.+.+.+.+++++..+++-++++--.... -..++..|+-.+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~y 161 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLY 161 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 54433 35788888999999999999999999997722211 245666665543
No 157
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.97 E-value=0.22 Score=54.41 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=107.4
Q ss_pred hcchhHHHHhhc-CCCCHHHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhh
Q 009182 30 LQQIVPPVLNSF-SDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (541)
Q Consensus 30 l~~ii~~vl~~l-~D~d~~VR~~A~eaL~~i~k~~---~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~ 104 (541)
++..+...+.+. --+|..+|.+||.++.+.+... +.+ ..-+.+.+.+.+++.||+..|...+ .++.+++-+..
T Consensus 374 l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 374 LETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 334444444444 3668889999999988877554 223 2235788889999999999999988 66666544333
Q ss_pred cccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchh--hhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009182 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM--LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (541)
Q Consensus 105 ~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l--~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~l 182 (541)
.-...|--.-+|..+.+.+.+.++.+|+..+-.+..+.=..+... ..+=.-.-.++..+.+|++.+|.+.+-+.+..|
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 222345566779999999999999999999988887654444322 122122234555677999999999998888888
Q ss_pred HH
Q 009182 183 LQ 184 (541)
Q Consensus 183 l~ 184 (541)
+.
T Consensus 532 ~c 533 (678)
T KOG1293|consen 532 TC 533 (678)
T ss_pred hc
Confidence 73
No 158
>PF05536 Neurochondrin: Neurochondrin
Probab=95.88 E-value=3.8 Score=45.36 Aligned_cols=179 Identities=12% Similarity=0.099 Sum_probs=116.9
Q ss_pred HHHHHHH-HHHHHHHh--HhhcccchhcHhhhHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHH
Q 009182 87 ANVQSAA-HLLDRLVK--DIVTESDQFSIEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN 162 (541)
Q Consensus 87 ~~VR~~A-~~L~~l~k--di~~e~~~~~l~~~iP~L~e~l~d~~~-~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~ 162 (541)
...+.-| ..|..++. ++. ....+-.-||.|.+.+..... .+-.-+.+++..+++.+...-.-.=..-++.|+.
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a---~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELA---SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhh---cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 3455555 66666664 121 124466679999999988666 8888999999999877643211111234555665
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCC----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc------Ccc
Q 009182 163 MLSDSSHEIRQQADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD------QLV 232 (541)
Q Consensus 163 lL~D~~~eVR~~a~~~L~~ll~~i~~~~----~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~------~l~ 232 (541)
.+.+ .+-..+.+...+..++...+... ...+..+++.+-..........|.+.+.-++.+....+. .--
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 6655 55667778788888877655221 123567778777777766777788888888877655431 112
Q ss_pred cchhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhc
Q 009182 233 PYYADILGAILPCISD-KEEKIRVVARETNEELRAIKA 269 (541)
Q Consensus 233 p~l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i~ 269 (541)
.+.+.+..++-..++. ..++-|..|.+....+++..+
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 3566667777776665 457788888888888877655
No 159
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=1.2 Score=50.11 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=89.1
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 009182 116 IPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPS 191 (541)
Q Consensus 116 iP~L~e~l~d~-~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~~~~~ 191 (541)
+..|.+.++.+ +|....-++.=+..+..+...+-+.-+ ..+.|.|.++|++. +.|+-..||+++..+++.++....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 55566666654 666665555555555555555544443 47788899999875 799999999999999998876543
Q ss_pred CCh-HHHHHHHHHhcCCCCH----------------------------------------HHHHHHHHHHHHHHhhcCcC
Q 009182 192 VDY-GRMAEILVQRAASPDE----------------------------------------FTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 192 ~~~-~~ii~~Ll~~~~~~~~----------------------------------------~vr~~al~wL~~l~~~~~~~ 230 (541)
.-+ .+.||++++++..-++ .++..|+....+.++-...+
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 222 2455555554433211 23444554444444444444
Q ss_pred cccchhhHHHHHhhhcCCCChhHH
Q 009182 231 LVPYYADILGAILPCISDKEEKIR 254 (541)
Q Consensus 231 l~p~l~~llp~ll~~l~d~~~~iR 254 (541)
-..|+-+.+|.+-+.+++.+...-
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~i 352 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPI 352 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhH
Confidence 455788999999999999775433
No 160
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.75 E-value=2.4 Score=42.22 Aligned_cols=238 Identities=11% Similarity=0.129 Sum_probs=144.2
Q ss_pred HHHhhcCCCHHHHHHH-HHHHHHHhHhhcc-cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHH
Q 009182 78 LCKLSADSDANVQSAA-HLLDRLVKDIVTE-SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD 155 (541)
Q Consensus 78 L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e-~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~ 155 (541)
|-..+.|.|..+|..| ..|...++.+..+ -....++.++..+..++.| ...-..++..+..+.+.....- .....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~-~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSP-ESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCCh-hhHHH
Confidence 3456789999999999 8888888766543 1234577888888888854 3333334666666654432111 22556
Q ss_pred HHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhcCcCcc
Q 009182 156 FLDGLFNMLSDS--SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLV 232 (541)
Q Consensus 156 ~L~~L~~lL~D~--~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~-~~~~~vr~~al~wL~~l~~~~~~~l~ 232 (541)
++..+++-..-+ ....|..+-+.+..+++........--+.++..+++.+. ..||+-=..+...+..+....+ +.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~ 158 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS 158 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc
Confidence 677777544433 367799888888888876532111112456666666554 4588877777776666655443 23
Q ss_pred cchhhHHHHHhhhc--CC----CCh-hHHHHHHHHHHHHHHhhcCCCCCCCh-HhHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009182 233 PYYADILGAILPCI--SD----KEE-KIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSSEWEATRIEALHWIS 304 (541)
Q Consensus 233 p~l~~llp~ll~~l--~d----~~~-~iR~~A~~~~~~L~~~i~~~~~~~~l-~~il~~L~~~L~~~~~~~R~aal~wL~ 304 (541)
++...+..++.--. +. .+| .| .+.+.-..|.+.+..+ -.+ +..+|.|.+.|.++...+|..+++.+.
T Consensus 159 ~~~e~lFd~~~cYFPI~F~pp~~dp~~I--T~edLk~~L~~cl~s~---~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~ 233 (262)
T PF14500_consen 159 EFAEDLFDVFSCYFPITFRPPPNDPYGI--TREDLKRALRNCLSST---PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLK 233 (262)
T ss_pred hhHHHHHHHhhheeeeeeeCCCCCCCCC--CHHHHHHHHHHHhcCc---HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 34444444333211 00 011 11 1122222232323322 123 468899999999988889999999999
Q ss_pred HHHhhChH-HHhhhhHHHHHHH
Q 009182 305 TLLNRHRT-EVLHFLNDIFDTL 325 (541)
Q Consensus 305 ~L~~~~~~-~i~~~l~~l~p~L 325 (541)
+-.+..+. .+.+|...+...+
T Consensus 234 ~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 234 ACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHCCHHHHHHHHHHHHHHH
Confidence 88888765 4788888887765
No 161
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.74 E-value=4.7 Score=52.29 Aligned_cols=431 Identities=15% Similarity=0.134 Sum_probs=211.4
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch-hhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~-~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
+-..++.+.+.++..|+.|.-|+..+.++.-+...... ....+-..++.++.-.+.|...++.+|+ ..-...++++..
T Consensus 1029 pi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~ 1108 (3550)
T KOG0889|consen 1029 PMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILR 1108 (3550)
T ss_pred chHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHH
Confidence 55666778888899999999999998887766655432 3345556788888888899999888877 322223333322
Q ss_pred --------c-cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCC--CHHHH--
Q 009182 106 --------E-SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS--SHEIR-- 172 (541)
Q Consensus 106 --------e-~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~--~~eVR-- 172 (541)
+ ........++-.+..-+-++|+.||.++...+..+....+.+.. .++..+.+.+.=+ ..+.|
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~----~L~~p~K~~ll~p~f~k~lr~~ 1184 (3550)
T KOG0889|consen 1109 VIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVV----KLLEPFKDVLLSPIFKKPLRAL 1184 (3550)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHhccccccccccC
Confidence 1 12223333344444445568889999999999999888765443 3333333333111 11111
Q ss_pred --HHHHHHHHHH--HHHhcCCCCCCh-HHHHH------HHHHh-----------cCCCC----HHHHHHHHHHHHHHHhh
Q 009182 173 --QQADSALWEF--LQEIKNSPSVDY-GRMAE------ILVQR-----------AASPD----EFTRLTAITWINEFVKL 226 (541)
Q Consensus 173 --~~a~~~L~~l--l~~i~~~~~~~~-~~ii~------~Ll~~-----------~~~~~----~~vr~~al~wL~~l~~~ 226 (541)
......++.+ +-..+..+ .++ ..+.. .+... ...++ -..|..|+..+.+....
T Consensus 1185 p~~~qig~vd~~~fC~~l~p~~-f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~ 1263 (3550)
T KOG0889|consen 1185 PFTIQIGHLDAITFCLSLGPCL-FDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKL 1263 (3550)
T ss_pred CHHHHhhhHHHHHHHHHcCCcc-cCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhc
Confidence 1121222222 11122111 111 11111 11111 00011 12355566665544433
Q ss_pred c---CcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCC---hHhHHHHHHHhcCCCCHHHHHHHH
Q 009182 227 G---GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSEWEATRIEAL 300 (541)
Q Consensus 227 ~---~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~---l~~il~~L~~~L~~~~~~~R~aal 300 (541)
. -....++-++++..+++.|-.+.+++-++|..+....... ..... +...+..+...+.+-.- -=+..+
T Consensus 1264 ~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~----~~~~~ke~lq~~lrplL~~l~d~~~-lsv~~l 1338 (3550)
T KOG0889|consen 1264 SDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQ----DVKLPKELLQSHLRPLLMNLSDHNN-LSVPGL 1338 (3550)
T ss_pred ccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhc----cccccHHHHHhhHHHHHHhhhHhhh-hhHHHH
Confidence 2 2345678899999999999889999988877665443211 11122 23344444444433111 334566
Q ss_pred HHHHHHHhhChHHHh-hhhHHHHHHHHHhcCCCCHH-------------HHHHHHHHHHHHhcchhhHHHHHHHHHHhcc
Q 009182 301 HWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPSDE-------------VVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 301 ~wL~~L~~~~~~~i~-~~l~~l~p~Ll~~L~D~~~~-------------V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~ 366 (541)
.|+..+.+..+.-+. .....++..+-+.+.|..-+ ++.........+.. -=++++..|+....
T Consensus 1339 ~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~~~~y~~~~l~~~~~~~i~~~~i~~f~~lp~---~~~~~~~~Ll~~v~ 1415 (3550)
T KOG0889|consen 1339 EGLSRLLRLLINYFKVEIGRKLLQHLKKWLEDEVLDYLSGALKAGPEMKIIVVIINLFHLLPP---AADKFLDELLLCVV 1415 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHhhhhccCccchhhhHHHHHHHhccH---HHHHHHHHHHHHHH
Confidence 777766666554332 12222333333322221111 11111111111110 11223333333222
Q ss_pred ccchhh-hh----hHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHHHHHHHhhccCCcc
Q 009182 367 VDNSLL-EK----RGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPA 441 (541)
Q Consensus 367 ~~~~ll-~~----r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~~R~~L~~~~~~~~ 441 (541)
+-+..+ .+ -+.-+.+-+ ...+.+.+.-.+.+ ..+..+.+.++-.+ -.+...++|..+.+
T Consensus 1416 ~~e~~L~~~~~sp~r~pl~kfl-~r~~~~tv~~f~~~----~~~~~~~~~f~~~~-----~~~~~~~l~e~~~~------ 1479 (3550)
T KOG0889|consen 1416 LLEEVLRKEENSPFREPLLKFL-NRFANPTVDYFLAQ----LDEPDLYRMFVYAL-----RIDDLLPLREVLAK------ 1479 (3550)
T ss_pred HHHHHHHHhcCChhhhHHHHHH-HHccCchHHHHHHH----cchHHHHHHHHHHH-----cccchhHHHHHHhh------
Confidence 221111 00 011122222 22222333333333 33444555444444 23455666666665
Q ss_pred hhHHHHHHH-HhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccch
Q 009182 442 GKDLFVSLY-ASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNV 487 (541)
Q Consensus 442 ~~~lf~~l~-~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~ 487 (541)
.+.-|..++ ..-.++++...+.|.-.|.-..++.+++.+++-..+.
T Consensus 1480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~vk~~~e~~~s~ 1526 (3550)
T KOG0889|consen 1480 EWLEFYTLLDPEISSYTVPNMASDIQFQMVPLISTMVKNDDEWLLSS 1526 (3550)
T ss_pred hHHHHHHhccCccCccccchhhcchhhhhhHHHHHHHhccHHHhhcc
Confidence 444444433 3445566667788888888888887766665555553
No 162
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.22 Score=49.92 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=110.1
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-----chh
Q 009182 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-----DLQ 352 (541)
Q Consensus 278 ~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-----~~~ 352 (541)
+..+......|.+++|+.+..++..+.-|.+-.++.+.+.+..++.++++.++.+...|-..+|.+++.|.+ ..+
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788889999999999999999999999999999999999999999999999999999999999983 244
Q ss_pred hHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHHHhccc
Q 009182 353 HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE 403 (541)
Q Consensus 353 ~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~ 403 (541)
.++..+..|+..-..+++.+.+-++-....+-....|.++-+.+..++...
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~ 217 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS 217 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh
Confidence 667777777777778888888888888888888899999999998887764
No 163
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.67 E-value=3.5 Score=43.38 Aligned_cols=213 Identities=12% Similarity=0.090 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhhcCC------CchhhhchHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhcCCC-CCC-hHHH
Q 009182 128 PYVRQFLVGWITVLDSVP------DIDMLGFLPDFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSP-SVD-YGRM 197 (541)
Q Consensus 128 ~~vR~~a~~~l~~L~~~~------~~~l~~~lp~~L~~L~~lL~D~~--~eVR~~a~~~L~~ll~~i~~~~-~~~-~~~i 197 (541)
..+-..|+..++.+...+ +.+... .+++..+..+.+++ +.+-.....++.. +.++... ..+ .+.+
T Consensus 60 ~~L~~qALkll~~~l~~~~i~~~l~~d~~~---~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l 134 (372)
T PF12231_consen 60 SRLVIQALKLLGFFLYHPEIVSTLSDDFAS---FIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERL 134 (372)
T ss_pred hHHHHHHHHHHHHHHccHHHHhhCChHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHH
Confidence 344455666666553322 222221 35666667777764 4444444333321 1111100 112 2333
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCC----
Q 009182 198 AEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA---- 272 (541)
Q Consensus 198 i~~Ll~~~~-~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~---- 272 (541)
+..+....+ -+.-.+-...+..+..+....|..|..+...=+|.+++.+-++...+|..|..........++.+.
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~ 214 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSK 214 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHH
Confidence 333333221 234445556666777788888888888888888899998889999999887765554433332210
Q ss_pred -----------CCCCh-HhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhC-h-HHHhhhhHHHHHHHHHhcCCCCHHHH
Q 009182 273 -----------DGFDV-GPILSIATRQLSS-EWEATRIEALHWISTLLNRH-R-TEVLHFLNDIFDTLLKALSDPSDEVV 337 (541)
Q Consensus 273 -----------~~~~l-~~il~~L~~~L~~-~~~~~R~aal~wL~~L~~~~-~-~~i~~~l~~l~p~Ll~~L~D~~~~V~ 337 (541)
++ .+ +.+.+.+.+.+.+ ++. +.+-=.|...+.-.. + -+-.+++...+...-++++++++.+|
T Consensus 215 ~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k 291 (372)
T PF12231_consen 215 SVLEDLQRSLENG-KLIQLYCERLKEMIKSKDEY--KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVK 291 (372)
T ss_pred HHHHHhccccccc-cHHHHHHHHHHHHHhCcCCc--chHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHH
Confidence 01 11 2233445555544 222 222223443333222 2 33457888999999999999999999
Q ss_pred HHHHHHHHHHh
Q 009182 338 LLVLEVHACIA 348 (541)
Q Consensus 338 ~~~~~~L~~i~ 348 (541)
..|..++..+.
T Consensus 292 ~~A~~aW~~li 302 (372)
T PF12231_consen 292 IQAFKAWRRLI 302 (372)
T ss_pred HHHHHHHHHHH
Confidence 99999999877
No 164
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.63 E-value=1.2 Score=50.21 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhcCCC----------CCChHHHHHHHHHh----cCCCCHHHHHHH
Q 009182 155 DFLDGLFNMLSD----SSHEIRQQADSALWEFLQEIKNSP----------SVDYGRMAEILVQR----AASPDEFTRLTA 216 (541)
Q Consensus 155 ~~L~~L~~lL~D----~~~eVR~~a~~~L~~ll~~i~~~~----------~~~~~~ii~~Ll~~----~~~~~~~vr~~a 216 (541)
+++..++.++.. .++.+|..|.-+++.++....... ....+.+++.+... ....+...+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 444555555553 457789999999999988766541 11234444544443 345566777777
Q ss_pred HHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC---ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC--CC
Q 009182 217 ITWINEFVKLGGDQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SE 291 (541)
Q Consensus 217 l~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~---~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~--~~ 291 (541)
+..|+++- .|..++.+.+.+.+. ...+|-+|..+...+ .. ..-+.+.+++...+. .+
T Consensus 511 LkaLgN~g----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~---~~-----~~~~~v~~~l~~I~~n~~e 572 (618)
T PF01347_consen 511 LKALGNLG----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL---AK-----HCPEKVREILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG---GG-----T-HHHHHHHHHHHHH-TTS
T ss_pred HHHhhccC----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHH---hh-----cCcHHHHHHHHHHhcCCCC
Confidence 77777652 367778888777765 467787776665433 11 112467777777773 45
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc-CCCCHHHHHHHHHH
Q 009182 292 WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLEV 343 (541)
Q Consensus 292 ~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L-~D~~~~V~~~~~~~ 343 (541)
+.+.|++|+..+. +..|.. ..+..+...+ .|++..|.+-+...
T Consensus 573 ~~EvRiaA~~~lm---~~~P~~------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 573 DPEVRIAAYLILM---RCNPSP------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -HHHHHHHHHHHH---HT---H------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred ChhHHHHHHHHHH---hcCCCH------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 6778999875432 332332 1222223333 47777777654433
No 165
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.57 E-value=0.12 Score=47.65 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhc----C----CC----------------------CCC-----hH
Q 009182 152 FLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIK----N----SP----------------------SVD-----YG 195 (541)
Q Consensus 152 ~lp~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i~----~----~~----------------------~~~-----~~ 195 (541)
-.|.+++.|+++++ +.+.++|.++.+++|.+. .+. + .. .+. ..
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-ALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILG-ALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPT 85 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHH
Confidence 35899999999995 557999999999988663 111 0 00 000 11
Q ss_pred HHHHHHHHhcCCCCHHH-HHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 009182 196 RMAEILVQRAASPDEFT-RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (541)
Q Consensus 196 ~ii~~Ll~~~~~~~~~v-r~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i 268 (541)
-.+..++..++|+.-.. ...++..+..+.+..|....||+|+++|.++..+....+..|+.-...++.+...+
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 23334444444443211 22334444433344566679999999999999999877788877666666655443
No 166
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.48 E-value=3.4 Score=42.00 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=107.4
Q ss_pred chHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 152 FLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 152 ~lp~~L~~L~-~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
.+.++++++. ..+.-++++||+.+.+|+|-+.- +.. ..-.+.++.+....+..++.+|.+|+..+..+.-..|..
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~---~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDK---ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hCh---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 3446666655 56677788999999999997752 221 123566777777776679999999999998887776654
Q ss_pred cccch---------hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCC-hHhHHHHHHHhcCCC----CHHHH
Q 009182 231 LVPYY---------ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSSE----WEATR 296 (541)
Q Consensus 231 l~p~l---------~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~-l~~il~~L~~~L~~~----~~~~R 296 (541)
...-. ..++..+.+.+.+.++++|.+|.+...+|+ -.. .+. .+.++..|.-...++ +...|
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl---L~~--~i~~~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL---LSG--RISDPPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hcC--CCCcHHHHHHHHHHHHcCcccCCcHHHH
Confidence 44333 358888999998889999988887766653 211 122 367777776666543 23334
Q ss_pred HHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC
Q 009182 297 IEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS 330 (541)
Q Consensus 297 ~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~ 330 (541)
..=-..+-.++...+....-..+.++|++-...+
T Consensus 174 Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 174 QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3322333344444443333334455565554444
No 167
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.39 Score=52.84 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=97.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh-----hhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-----IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~-----~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
|.+.++++-+++.||..|++.+.+.-..-.+.. -.-+..=|..+.+++.|+-++||..| ..+.+..-..=.--+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 667899999999999999999888664433211 12334456778899999999999999 765554321100001
Q ss_pred hhcHhhhHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009182 109 QFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (541)
Q Consensus 109 ~~~l~~~iP~L~e~-l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~l 182 (541)
...+..++..+..- -.|...+||-...+.+.-+...|-. .+.+..+||.+--.|.|.+..||.++...+-.+
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 12233334444433 3467789999999999988776632 133445566555688999999999987665543
No 168
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.22 Score=49.81 Aligned_cols=145 Identities=18% Similarity=0.155 Sum_probs=99.2
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
.+.+.+++..|.+.+..+-+.|-.+||.++..|....+..+......+.-.|..-.++...-||+.| .+|.+..+ .
T Consensus 124 ~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~-~-- 200 (334)
T KOG2933|consen 124 NPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN-H-- 200 (334)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh-c--
Confidence 4567778888999999999999999999999999887776665555556666555566677899999 77766554 1
Q ss_pred ccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch--hhhchHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009182 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~--l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~ 178 (541)
..-..++|.|..+.++.++.+|..++-+........+.. ..+++-+..+.+-+-++|.-+++|+++...
T Consensus 201 ----vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 201 ----VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred ----cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHH
Confidence 223445666666778889999999988776555444311 123333444444455566666666665443
No 169
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.45 E-value=1.1 Score=48.00 Aligned_cols=220 Identities=8% Similarity=0.128 Sum_probs=127.9
Q ss_pred CCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh----HHHHHHHHHhcCCC-CHHHHHHHHHH
Q 009182 145 PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY----GRMAEILVQRAASP-DEFTRLTAITW 219 (541)
Q Consensus 145 ~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~----~~ii~~Ll~~~~~~-~~~vr~~al~w 219 (541)
.+.++.++.+.++..||+.+.-+...--+-..+|+-+.+...+....+.. ++++.++..-++++ +|..-....+-
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 45678899999999999888543211112233444445444444433443 44444444445554 67767777777
Q ss_pred HHHHHhhcC----cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc---CCCC
Q 009182 220 INEFVKLGG----DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL---SSEW 292 (541)
Q Consensus 220 L~~l~~~~~----~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L---~~~~ 292 (541)
++.++.... +.+..|-+.++|.+..-++.+..|.-.-+-+....+.+.-.+.+-.-.|.++++.+..-- ...+
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gn 175 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGN 175 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTT
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCC
Confidence 776666532 334457778888888888776555555556667777665441111123566666654332 1122
Q ss_pred HHHHHHHHHHHHHHHhhChHHHh--hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc------chhhHHHHHHHHHHh
Q 009182 293 EATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHN 364 (541)
Q Consensus 293 ~~~R~aal~wL~~L~~~~~~~i~--~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~------~~~~f~~~m~~LL~~ 364 (541)
. =+..+.+.++.++.|..+. +++..++...-+.++.+..+ +.+.++|..|.. -++|++.+..-++++
T Consensus 176 i---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~R 250 (435)
T PF03378_consen 176 I---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTR 250 (435)
T ss_dssp H---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHH
T ss_pred c---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 2 2333577888888888875 67888888888888877544 235566666652 267999999999999
Q ss_pred ccccc
Q 009182 365 FRVDN 369 (541)
Q Consensus 365 ~~~~~ 369 (541)
+++.+
T Consensus 251 Lq~sk 255 (435)
T PF03378_consen 251 LQSSK 255 (435)
T ss_dssp HHHC-
T ss_pred HhhCC
Confidence 97654
No 170
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=5.1 Score=43.42 Aligned_cols=259 Identities=12% Similarity=0.169 Sum_probs=153.5
Q ss_pred hhHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCC---ch-hhhchHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHh
Q 009182 114 EFIPLLRERMNVLN--PYVRQFLVGWITVLDSVPD---ID-MLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 114 ~~iP~L~e~l~d~~--~~vR~~a~~~l~~L~~~~~---~~-l~~~lp~~L~~L~~lL-~D~~~eVR~~a~~~L~~ll~~i 186 (541)
.++-.+++.+.+.+ ..+-...+..++....... .+ .+..-+.+++..+++. ...+.+-+.+.++.+..+.+.+
T Consensus 199 pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf 278 (559)
T KOG2081|consen 199 PLITLAFRSLSDDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAF 278 (559)
T ss_pred HHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHH
Confidence 34555666666432 2333344444444433221 11 2223344566666443 2234444555556665555544
Q ss_pred c----CCCCCChHHHHHHHHHhcCCCCHHHHHHHH-HHHH--HHHhh-----cCcCcccchhhHHHHHhhhcCCCC----
Q 009182 187 K----NSPSVDYGRMAEILVQRAASPDEFTRLTAI-TWIN--EFVKL-----GGDQLVPYYADILGAILPCISDKE---- 250 (541)
Q Consensus 187 ~----~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al-~wL~--~l~~~-----~~~~l~p~l~~llp~ll~~l~d~~---- 250 (541)
. ..++ ++-.++..++-...++++++-...+ +|.+ +.... .-..+.||.-+++..+....++..
T Consensus 279 ~~~i~~np~-~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~ 357 (559)
T KOG2081|consen 279 VVLISTNPE-EFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFD 357 (559)
T ss_pred HHHHhhCCC-cchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCcccc
Confidence 2 2222 4567777888888888888877766 5765 22222 123567999999999999888643
Q ss_pred -----h---hHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 009182 251 -----E---KIRVVARETNEELRAIKADPADGFDVGPILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (541)
Q Consensus 251 -----~---~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L--~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~ 320 (541)
. +-|....+......-++++ ++.+..+...+ ....|+.-+|++..+.+++...+ +.-..
T Consensus 358 l~Ee~~~f~~fR~~v~dvl~Dv~~iigs-------~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~----~~e~~ 426 (559)
T KOG2081|consen 358 LPEEESEFFEFRLKVGDVLKDVAFIIGS-------DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVS----PEENT 426 (559)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhCc-------HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCC----ccccc
Confidence 1 1233333333333333443 34444444444 34679999999999999888764 44556
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhcc
Q 009182 321 IFDTLLKALSD--PSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (541)
Q Consensus 321 l~p~Ll~~L~D--~~~~V~~~~~~~L~~i~----~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~ 386 (541)
++|.+++.+.. ...-+|..++-++++++ .++..++.+..-+..-+...+ +...++..++.+|..
T Consensus 427 i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~ 496 (559)
T KOG2081|consen 427 IMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSA 496 (559)
T ss_pred hHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHH
Confidence 67777766553 23348889999999998 356666677666666665544 677788888877754
No 171
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.37 E-value=2.8 Score=44.51 Aligned_cols=339 Identities=15% Similarity=0.127 Sum_probs=188.1
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh---------h--hHHHHHH-HHHHHhhcC
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF---------I--IFFNQIF-DALCKLSAD 84 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~---------~--~~~~~i~-~~L~kl~~D 84 (541)
..||..+.-+..|.-++...|-.++.|+++.+..+++..++.+......+. . ++|.-.. .......-|
T Consensus 280 ~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD 359 (728)
T KOG4535|consen 280 TLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD 359 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh
Confidence 345666666778888999999999999999999999999998876543111 0 1221111 111112222
Q ss_pred CC-HHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHH
Q 009182 85 SD-ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGL 160 (541)
Q Consensus 85 ~d-~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L 160 (541)
.. ...+.++ .++.++.-.-...-+ .+-....|.+...-.| +|.-+|..++..+.++.-.++.. -..+.-+-..++
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lp-n~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~i 438 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLP-NDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAI 438 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCC-CcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHH
Confidence 21 1222222 222222110000000 0111335555555554 67778888888887776666532 223444555666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhc-CCCCCC------hHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 161 FNMLSDSSHEIRQQADSALWEFLQEIK-NSPSVD------YGRMAEILVQRAA---SPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 161 ~~lL~D~~~eVR~~a~~~L~~ll~~i~-~~~~~~------~~~ii~~Ll~~~~---~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
...+.|..-.+|..+.=.++.+...+. +.|+++ ....+..++.... -.++.|+.+++..++.+.++....
T Consensus 439 l~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i 518 (728)
T KOG4535|consen 439 LMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPI 518 (728)
T ss_pred HHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHh
Confidence 677788777788777767766655543 233333 1223333333222 235789999999999887754433
Q ss_pred cccchhhHHHHHhhhcCCCC-----hhHHHHHHHHHHHHHHhhcCCCC---CCCh-HhHHHHHHHhc-CCCCHHHHHHHH
Q 009182 231 LVPYYADILGAILPCISDKE-----EKIRVVARETNEELRAIKADPAD---GFDV-GPILSIATRQL-SSEWEATRIEAL 300 (541)
Q Consensus 231 l~p~l~~llp~ll~~l~d~~-----~~iR~~A~~~~~~L~~~i~~~~~---~~~l-~~il~~L~~~L-~~~~~~~R~aal 300 (541)
.-+-+..++..-...+.+.+ ..||--|.-+.+ .++++..- ..+. +.+.+.|...+ ...|+.+|..|.
T Consensus 519 ~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~g---NLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA 595 (728)
T KOG4535|consen 519 EKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMG---NLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAA 595 (728)
T ss_pred hhccHHHHHHHHHHhcccceecccccccchHHHHHHH---HhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhh
Confidence 33334455554444444432 345544444444 44554321 1122 57788888887 557888888877
Q ss_pred HHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---cchhhHHHHHHHHHHhccc
Q 009182 301 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNFRV 367 (541)
Q Consensus 301 ~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~---~~~~~f~~~m~~LL~~~~~ 367 (541)
-.+..- +.+.+...+++-....++.. .++++....+-++. +-...|...+..++...++
T Consensus 596 ~aL~vp--~~re~~~d~~~Lsw~~lv~a------Li~s~~~v~f~eY~~~Dsl~~q~c~av~hll~la~S 657 (728)
T KOG4535|consen 596 AALSVP--GKREQYGDQYALSWNALVTA------LQKSEDTIDFLEYKYCDSLRTQICQALIHLLSLASS 657 (728)
T ss_pred hhhcCC--CCcccchhHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 665432 23445555555555555443 35555555555555 2345677888888877754
No 172
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.33 E-value=0.28 Score=51.45 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHHhcCCC--------CCChHHH
Q 009182 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEI--RQQADSALWEFLQEIKNSP--------SVDYGRM 197 (541)
Q Consensus 128 ~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eV--R~~a~~~L~~ll~~i~~~~--------~~~~~~i 197 (541)
+.++..+++.+......-+.++.+|+|.|+.++.++|.....+. ...+..++. |+..+...+ .++++.|
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~-FL~~v~~~~~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQ-FLSSVAESPHHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHH-HHHHHHTSHHHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH-HHHHHHcchhHHHHhCCHHHHHHH
Confidence 47788889999888888888888999999999999997643322 223334443 333332221 0123444
Q ss_pred HHH-HHHhcC--C---------C-----------CH-HHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcC-C--CC
Q 009182 198 AEI-LVQRAA--S---------P-----------DE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-D--KE 250 (541)
Q Consensus 198 i~~-Ll~~~~--~---------~-----------~~-~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~-d--~~ 250 (541)
+.. ++..+. + | |. .-|.+|+..+..+++..+..+.+-+...+..++..-+ + .+
T Consensus 189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-
T ss_pred HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 432 222221 1 1 11 2356788888888877666655444444544444211 2 23
Q ss_pred hhHHHHHHHHHHHHHHhhcC-------CCCCCChHh-----HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh
Q 009182 251 EKIRVVARETNEELRAIKAD-------PADGFDVGP-----ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (541)
Q Consensus 251 ~~iR~~A~~~~~~L~~~i~~-------~~~~~~l~~-----il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l 318 (541)
..-++.|....+.+...... ....+|+.+ |+|.|. .-.+.....|..|++.+..+....|.+ .+
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~---~l 344 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE---QL 344 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH---HH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH---HH
Confidence 44566676666666422111 112234433 345555 212345557999999999999998875 56
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Q 009182 319 NDIFDTLLKALSDPSDEVVLLVLEV 343 (541)
Q Consensus 319 ~~l~p~Ll~~L~D~~~~V~~~~~~~ 343 (541)
.+++|.+++.|.+++.-|+.-|+.+
T Consensus 345 ~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 345 LQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhhhhh
Confidence 7899999999999998888765543
No 173
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=1.1 Score=45.97 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcC--cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC----CChHh
Q 009182 206 ASPDEFTRLTAITWINEFVKLGG--DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG----FDVGP 279 (541)
Q Consensus 206 ~~~~~~vr~~al~wL~~l~~~~~--~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~----~~l~~ 279 (541)
.+.+.+-+..|+.=+.++++-.. .++.+ +..+.|++. .+.+++.++|+.|..+.++.. .+++.. .. ..
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~-~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~---qNNP~~Qe~v~E-~~ 166 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS-LGGLVPLLG-YLENSDAELRELAARVIGTAV---QNNPKSQEQVIE-LG 166 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh-ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHH---hcCHHHHHHHHH-cc
Confidence 34467778888887777766432 22322 344445555 888999999999999888773 322100 01 12
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHH--HHHHHHHHHHHhc
Q 009182 280 ILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEV--VLLVLEVHACIAK 349 (541)
Q Consensus 280 il~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V--~~~~~~~L~~i~~ 349 (541)
.++.|...+. +.+..+|..||.+++.+..+.+.+...+. ++ +..|.+.|.+++.+| +.+++.+++.+.+
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 4566777774 45566889999999999999988875442 23 557788888865444 5588888888773
No 174
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=1.7 Score=44.53 Aligned_cols=183 Identities=18% Similarity=0.123 Sum_probs=103.4
Q ss_pred chhHHHHHHHHHHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh-hhHHHHHHHHHHH
Q 009182 2 HKWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCK 80 (541)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~-~~~~~~i~~~L~k 80 (541)
.||++=.|...-|--......+..+...+.. +|.....-...+.+=|..|-+-+...+.....+. +..+ .-++.+..
T Consensus 54 ~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~-~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~-ggl~~ll~ 131 (342)
T KOG2160|consen 54 RKWLQELMQAHTEDQKDFVEDMKVISDVMSM-IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISL-GGLVPLLG 131 (342)
T ss_pred hHHHHHHHHHhhhhhhhhcccchhHHHHHHh-hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhc-cCHHHHHH
Confidence 3788877776665444333333333333333 2333333344566667777777777666553221 1111 23444555
Q ss_pred hhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC--CchhhhchHHH
Q 009182 81 LSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVP--DIDMLGFLPDF 156 (541)
Q Consensus 81 l~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~--~~~l~~~lp~~ 156 (541)
.+.++++++|..| ..+..+...-+.-....-=..+.+.|...+.. .+-++|..++.+++.+.... +.+-.--++.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G- 210 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG- 210 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-
Confidence 8999999999999 65555443111100000011145666666554 56688899999999876543 3333333333
Q ss_pred HHHHHHHcCCCCHHH--HHHHHHHHHHHHHHhc
Q 009182 157 LDGLFNMLSDSSHEI--RQQADSALWEFLQEIK 187 (541)
Q Consensus 157 L~~L~~lL~D~~~eV--R~~a~~~L~~ll~~i~ 187 (541)
..+|...+.+++.+| +..+...+..++.+-.
T Consensus 211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 667778888865555 4556688888887654
No 175
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.21 E-value=0.23 Score=54.55 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhc
Q 009182 195 GRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKA 269 (541)
Q Consensus 195 ~~ii~~Ll~~~~~----~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~-d~~~~iR~~A~~~~~~L~~~i~ 269 (541)
.++-|+..+.|.+ +|+.++.+|---+..+.-+.. .|..+=+|.++..|. .++|.||.-|.-..|.+.-.+.
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~----~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSF----EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 4455666665554 688998888666666655443 367777888888887 4789999665544444321111
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 270 ~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
.-.++.-..|-+.|.+++..+|.+|+..+..+.-...-++. +-+|.+..+|.|++.++..++--.+..+++
T Consensus 967 -----~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVK----Gqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 967 -----TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK----GQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred -----hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeec----cchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 11355667788889999999999999988877665544443 445667889999999999998888888884
Q ss_pred ch-hhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHH
Q 009182 350 DL-QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELST 398 (541)
Q Consensus 350 ~~-~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~ 398 (541)
.+ ..+..|+. +-..+..+....++--..||+-|-..+.-||=-+.+.+
T Consensus 1038 KdNt~yn~fid-ifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E 1086 (1128)
T COG5098 1038 KDNTMYNGFID-IFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKE 1086 (1128)
T ss_pred cccchhhhhHH-HHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22233322 22222322222222233455555555554444443333
No 176
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.18 E-value=0.7 Score=46.65 Aligned_cols=170 Identities=18% Similarity=0.296 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Q 009182 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS 207 (541)
Q Consensus 128 ~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~ 207 (541)
+..+..++.|+-. .......+..++|-++|.++.++.|.++++|...+.+|..+++.+...
T Consensus 93 ~~~~~~~l~w~v~-~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~------------------ 153 (282)
T PF10521_consen 93 PGLASHVLSWIVL-SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA------------------ 153 (282)
T ss_pred CcccHHHHHHHHH-hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh------------------
Confidence 3445567777754 344555677999999999999999999999999999999999765421
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcC--------CCChhHHHHHHHHHHHHHHhhcCCCCC---CC
Q 009182 208 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--------DKEEKIRVVARETNEELRAIKADPADG---FD 276 (541)
Q Consensus 208 ~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~--------d~~~~iR~~A~~~~~~L~~~i~~~~~~---~~ 276 (541)
. |.. +.. .| ..+-+-+++.+++. +....+-..|..+.-.+.+....++.. ..
T Consensus 154 ---~-------~~~-L~~-tG-----l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~ 216 (282)
T PF10521_consen 154 ---E-------WDI-LRR-TG-----LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTW 216 (282)
T ss_pred ---h-------hHH-HHH-cC-----hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHH
Confidence 0 111 000 00 12223334444443 223445455666666665543222211 22
Q ss_pred hHhHHHH-HHHhcCC-C---CHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC
Q 009182 277 VGPILSI-ATRQLSS-E---WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (541)
Q Consensus 277 l~~il~~-L~~~L~~-~---~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~ 333 (541)
+..++.. +...+.+ . ....|...++-+..+....+.....|+..++|.+...+.+|.
T Consensus 217 l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 217 LDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 4444432 4444432 2 366788888889889888888999999999999999999874
No 177
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.35 Score=50.10 Aligned_cols=128 Identities=17% Similarity=0.282 Sum_probs=94.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHh
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~ 113 (541)
.-++.-++..+.+||..|..-+....+........+..++++.+..++.|-+..||.+. .+++.++--...+.-..-..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 44667789999999999988888777763334445778999999999999999999999 77766543222222123356
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHH
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN 162 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~ 162 (541)
.++|.+.-.+.+..|++|.....-+..+..-.+..+..+...+++....
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d 189 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKD 189 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 7888888888899999999999999988776665555555555554443
No 178
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.88 E-value=3.3 Score=44.42 Aligned_cols=232 Identities=12% Similarity=0.167 Sum_probs=122.6
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHc----CCC-CHHHHHHHHHHHHHHHHHhc
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML----SDS-SHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL----~D~-~~eVR~~a~~~L~~ll~~i~ 187 (541)
..++..|+..+..+...--.+++.++.++..+.+.+..++.+.+++.|...+ ++| +|.----.-++++.+++-..
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence 4445555555544333334556666666666666677777777777766544 233 33334444456666665433
Q ss_pred CCCCCC----h-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-cCcccchhhHHHHHhh-hcCCCChhHHHHHHHH
Q 009182 188 NSPSVD----Y-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-DQLVPYYADILGAILP-CISDKEEKIRVVARET 260 (541)
Q Consensus 188 ~~~~~~----~-~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~-~~l~p~l~~llp~ll~-~l~d~~~~iR~~A~~~ 260 (541)
.. +++ + +.+.|.+..-++..-.+.--.++.-+..+.+..+ ..+-+.+-.++|.++. .+-+...+| .+..+.
T Consensus 105 ~~-~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrL 182 (435)
T PF03378_consen 105 EA-DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRL 182 (435)
T ss_dssp GG-GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHH
T ss_pred CC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHH
Confidence 21 111 2 4455555554443322222223444555555555 4455555666665554 444455555 233344
Q ss_pred HHHHHHhhcC-CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHH-HhhhhHHHHHHHHHhcCCC-CHHHH
Q 009182 261 NEELRAIKAD-PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALSDP-SDEVV 337 (541)
Q Consensus 261 ~~~L~~~i~~-~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~-i~~~l~~l~p~Ll~~L~D~-~~~V~ 337 (541)
.....+--.. -...-.+.+++.+..+.+.+...+ ..+...+..+.+.+|.+ +.+|++.++-.++..|... .+.-+
T Consensus 183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~ 260 (435)
T PF03378_consen 183 LQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFV 260 (435)
T ss_dssp HHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHH
T ss_pred HHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHH
Confidence 4433321111 011135789999998888665422 34788999999999885 7899999999999999855 34444
Q ss_pred HHHHHHHHHHh
Q 009182 338 LLVLEVHACIA 348 (541)
Q Consensus 338 ~~~~~~L~~i~ 348 (541)
..-+..++.++
T Consensus 261 ~~fv~F~~~~~ 271 (435)
T PF03378_consen 261 KRFVVFLSLFA 271 (435)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 179
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.75 E-value=0.15 Score=42.27 Aligned_cols=84 Identities=18% Similarity=0.321 Sum_probs=64.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchh
Q 009182 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (541)
Q Consensus 157 L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~ 236 (541)
++..+..+.|+.+.||..+...|..+++.=. ....+.+.++..++..++|+|+.|=++|+..+..++...+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------ 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH------
Confidence 4456668899999999999888888876321 133468999999999999999999999999999998866543
Q ss_pred hHHHHHhhhcCC
Q 009182 237 DILGAILPCISD 248 (541)
Q Consensus 237 ~llp~ll~~l~d 248 (541)
++|.++..-.+
T Consensus 78 -vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 -VLPILLDEYAD 88 (92)
T ss_pred -HHHHHHHHHhC
Confidence 55555554433
No 180
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.67 E-value=0.22 Score=41.21 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc
Q 009182 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI 147 (541)
Q Consensus 74 i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~ 147 (541)
.+....+.++||.+-||..| ..|.++++.-- .....++.++..+.+.++|++++|=..++..+..++...+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 35555667899999999999 78888765322 12345788999999999999999999999999988876655
No 181
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=1.4 Score=52.79 Aligned_cols=219 Identities=13% Similarity=0.112 Sum_probs=132.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~ 194 (541)
+..+...+...|+.+|.-++.-++.+.+-...+ ....+|.......++..|.+++||..+...+..++..+++...+++
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~L 122 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFL 122 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455556666788999999999998887665544 3345777777777999999999999999999999999998878899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--cCcCcccchhhHHHHHhhhcC----CCChhHHH------------H
Q 009182 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPYYADILGAILPCIS----DKEEKIRV------------V 256 (541)
Q Consensus 195 ~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~--~~~~l~p~l~~llp~ll~~l~----d~~~~iR~------------~ 256 (541)
..++|..+-..-|.+..|..+|-.-....-.- -+....-+-|.+.+.+...+. ++-++-|- +
T Consensus 123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rv 202 (1312)
T KOG0803|consen 123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRV 202 (1312)
T ss_pred HhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHH
Confidence 99999999988888888877765433321110 001111122333333333321 11111111 1
Q ss_pred HHHHHHHHHHhhcCCCC---CCChHh----HH--HHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHH
Q 009182 257 ARETNEELRAIKADPAD---GFDVGP----IL--SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK 327 (541)
Q Consensus 257 A~~~~~~L~~~i~~~~~---~~~l~~----il--~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~ 327 (541)
-....-.+.+.....+. ..+..+ ++ +..-..+.+.....|.+..+.+..+.+..+.-+.+.-...+...+.
T Consensus 203 i~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~ 282 (1312)
T KOG0803|consen 203 ISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLL 282 (1312)
T ss_pred HHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHH
Confidence 11112222222222111 111111 11 2334445677788999999999999998888754544555544444
Q ss_pred hcCCCCH
Q 009182 328 ALSDPSD 334 (541)
Q Consensus 328 ~L~D~~~ 334 (541)
...|+.+
T Consensus 283 ~~~~~~d 289 (1312)
T KOG0803|consen 283 GSIDSLD 289 (1312)
T ss_pred ccccccc
Confidence 4445544
No 182
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.39 E-value=3.6 Score=45.82 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhh-cCcC-------cccchhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 009182 195 GRMAEILVQRAAS----PDEFTRLTAITWINEFVKL-GGDQ-------LVPYYADILGAILPCISDKEEKIRVVARETNE 262 (541)
Q Consensus 195 ~~ii~~Ll~~~~~----~~~~vr~~al~wL~~l~~~-~~~~-------l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~ 262 (541)
..++..+...+.+ +++.++.+|+-.++.++.- +... ...|.+.+...+-.+.++.+.+.+.++.+++|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4455555555544 3567788887777777652 2111 11233444444444444444444444555544
Q ss_pred HHHHhhcCCCCCCChHhHHHHHHHhcC-C--CCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC--CHHHH
Q 009182 263 ELRAIKADPADGFDVGPILSIATRQLS-S--EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP--SDEVV 337 (541)
Q Consensus 263 ~L~~~i~~~~~~~~l~~il~~L~~~L~-~--~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~--~~~V~ 337 (541)
.+ ..+..++.+...+. + .....|.+|+.++..++..+|..+.+ .+++...|+ +++||
T Consensus 472 N~-----------g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~-------~l~~i~~n~~e~~EvR 533 (574)
T smart00638 472 NA-----------GHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQE-------VLLPIYLNRAEPPEVR 533 (574)
T ss_pred cc-----------CChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHH-------HHHHHHcCCCCChHHH
Confidence 22 24556666666664 2 34568999999999999888887654 344555554 67899
Q ss_pred HHHHHHHHHHh
Q 009182 338 LLVLEVHACIA 348 (541)
Q Consensus 338 ~~~~~~L~~i~ 348 (541)
-.|+-++.+--
T Consensus 534 iaA~~~lm~t~ 544 (574)
T smart00638 534 MAAVLVLMETK 544 (574)
T ss_pred HHHHHHHHhcC
Confidence 98887777553
No 183
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=11 Score=42.28 Aligned_cols=204 Identities=14% Similarity=0.123 Sum_probs=106.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC---C---CChHHHHHHHHHh-cCCC------C----------HHH
Q 009182 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP---S---VDYGRMAEILVQR-AASP------D----------EFT 212 (541)
Q Consensus 156 ~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~---~---~~~~~ii~~Ll~~-~~~~------~----------~~v 212 (541)
..+.+.+.+.|...|+-......+...+..+++.+ + .++.+++..+.+. +.|+ + .++
T Consensus 336 ~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~ 415 (980)
T KOG2021|consen 336 IVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEV 415 (980)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHH
Confidence 45566667777777777666666666666665433 1 2355555555443 2221 1 245
Q ss_pred HHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCC---Ch------HhHHHH
Q 009182 213 RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF---DV------GPILSI 283 (541)
Q Consensus 213 r~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~---~l------~~il~~ 283 (541)
|..--.....++.+.|+-+..++.+-+..-+..-+.+.-+.-+.|....-.+.+....+..+. +. ..+++.
T Consensus 416 RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~l 495 (980)
T KOG2021|consen 416 RKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELL 495 (980)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHH
Confidence 655545566667777766655555555555544444433344555554444443333221111 11 123333
Q ss_pred H-HHhc-CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhc-chhhH
Q 009182 284 A-TRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD------PSDEVVLLVLEVHACIAK-DLQHF 354 (541)
Q Consensus 284 L-~~~L-~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D------~~~~V~~~~~~~L~~i~~-~~~~f 354 (541)
+ +.++ .+++..+. +..+-.+.+ -..+....++-+|.++...-| .+..||..+..+..|+.+ =.+..
T Consensus 496 l~tsqv~~h~h~lVq---LlfmE~ivR--Y~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkql 570 (980)
T KOG2021|consen 496 LMTSQVLAHDHELVQ---LLFMELIVR--YNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQL 570 (980)
T ss_pred HHHcccccCCchHHH---HHHHHHHHH--HHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHH
Confidence 2 2222 44444443 333333333 234455566677777766544 578899999999998873 12233
Q ss_pred HHHHHHHHHh
Q 009182 355 RQLVVFLVHN 364 (541)
Q Consensus 355 ~~~m~~LL~~ 364 (541)
.+++.+++.+
T Consensus 571 vpfie~iln~ 580 (980)
T KOG2021|consen 571 VPFIEEILNK 580 (980)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 184
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.21 E-value=0.46 Score=43.91 Aligned_cols=96 Identities=13% Similarity=0.250 Sum_probs=76.4
Q ss_pred hhchHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHH
Q 009182 150 LGFLPDFLDGLFNMLS------------------DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF 211 (541)
Q Consensus 150 ~~~lp~~L~~L~~lL~------------------D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~ 211 (541)
.++++.++|.++.-+. |..-|+|++|-+++..++..... ..++..+++.+...+.| ++.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~--~~~~~~~~~~v~~GL~D-~~D 80 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS--RIDISEFLDRVEAGLKD-EHD 80 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS--SS-HHHHHHHHHHTTSS--HH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHhhcCC-cHH
Confidence 3677888888874332 44579999999999999986543 35789999999999999 999
Q ss_pred HHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC
Q 009182 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD 248 (541)
Q Consensus 212 vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d 248 (541)
||..+...+..++...|..+.+.+..+.+.+-..++-
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998899998888777753
No 185
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.12 E-value=0.74 Score=50.90 Aligned_cols=145 Identities=12% Similarity=0.156 Sum_probs=106.5
Q ss_pred HHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCC
Q 009182 195 GRMAEIL--VQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (541)
Q Consensus 195 ~~ii~~L--l~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~ 272 (541)
+.++.++ +...+-.+.+.|..-...|.+-.+..++++. ..+++|.++..+...+ ++......+.+....-+
T Consensus 251 n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld 323 (690)
T KOG1243|consen 251 NDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLD 323 (690)
T ss_pred chHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhcc
Confidence 3444433 3445566677777766677766666666664 6789999999888765 33444555544443211
Q ss_pred CCCCh-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 273 DGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 273 ~~~~l-~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
. -+| ..++|.+.+.+...+..+|.-=|+-+-.+.+..++.+ ..++++|.+...+.|.++-+|..++.++..+++
T Consensus 324 ~-~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 324 E-EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred c-cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 1 123 3589999999999999999998888888888887776 458999999999999999999999999999883
No 186
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.11 E-value=5.8 Score=40.79 Aligned_cols=180 Identities=12% Similarity=0.110 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhhcCCC-chh--hhchHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHhcCCCCCChHHHHHHHHHh
Q 009182 129 YVRQFLVGWITVLDSVPD-IDM--LGFLPDFLDGLFNMLSDSSHEIRQQ-ADSALWEFLQEIKNSPSVDYGRMAEILVQR 204 (541)
Q Consensus 129 ~vR~~a~~~l~~L~~~~~-~~l--~~~lp~~L~~L~~lL~D~~~eVR~~-a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~ 204 (541)
.+|+-++..+....+..+ .+. ...+|.+++.++.=-.++.++.|.. +-.++..+++.++......++.++..+.++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 456666666666554433 221 2455555555544444466666643 456667777777765556677776666554
Q ss_pred ----cCC---CCHHHHHHHHHHHHHHHhhcCcCccc----chhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC
Q 009182 205 ----AAS---PDEFTRLTAITWINEFVKLGGDQLVP----YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (541)
Q Consensus 205 ----~~~---~~~~vr~~al~wL~~l~~~~~~~l~p----~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~ 273 (541)
..+ .-|+.|..-...++.+.+.+...+.. .+..++..+..++++++++|.+.+.++...+.+.+...+.
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 222 23789988888888877765544432 2567788888899999999998888888888766654111
Q ss_pred C----C---C----hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 009182 274 G----F---D----VGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (541)
Q Consensus 274 ~----~---~----l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~ 308 (541)
. + . +..++.++++......+......+.-+..+.+
T Consensus 202 ~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 202 EFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 23455555555544455544444444444433
No 187
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.02 E-value=0.56 Score=44.02 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhh-ChHHHhhhhHHHHHH-----------HH-HhcCCCCHHHHHHHHHHHHHHhcch-hhHHHHHHH
Q 009182 295 TRIEALHWISTLLNR-HRTEVLHFLNDIFDT-----------LL-KALSDPSDEVVLLVLEVHACIAKDL-QHFRQLVVF 360 (541)
Q Consensus 295 ~R~aal~wL~~L~~~-~~~~i~~~l~~l~p~-----------Ll-~~L~D~~~~V~~~~~~~L~~i~~~~-~~f~~~m~~ 360 (541)
+|.+|+.++..+.+. .+..+..|.+.++|. |+ -.+.||++.||..++.+++.+-++. +||.. ..+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~-Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ-AEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH-HHh
Confidence 699999999999999 677778888888873 33 3467999999999999999988543 33322 111
Q ss_pred HHHhccccchhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcH
Q 009182 361 LVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGEADLDFACTMVQALNLILLTSS 424 (541)
Q Consensus 361 LL~~~~~~~~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~ 424 (541)
- + ..+++| .-+...+|. ..+++.+...|+.|.+..........|....-..|
T Consensus 81 ~-------~---~~~~sF--tslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tP 134 (182)
T PF13251_consen 81 S-------K---GPSGSF--TSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATP 134 (182)
T ss_pred c-------C---CCCCCc--ccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCC
Confidence 1 0 011111 011111111 36788888889988888777777777765544444
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.96 E-value=2.2 Score=49.23 Aligned_cols=235 Identities=16% Similarity=0.159 Sum_probs=135.5
Q ss_pred HHHH-HHHHHHHhHhhcccchhcH-hhhHHHHHHHhcCCCHHHHHHHHHH-HHHh--hcCCCchhh-----hchHHHHHH
Q 009182 90 QSAA-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGW-ITVL--DSVPDIDML-----GFLPDFLDG 159 (541)
Q Consensus 90 R~~A-~~L~~l~kdi~~e~~~~~l-~~~iP~L~e~l~d~~~~vR~~a~~~-l~~L--~~~~~~~l~-----~~lp~~L~~ 159 (541)
|--| ..|.|+++ +..-.-..++ --+-|...+++++.-.+.|..++-. -..+ ++....|++ .|+-.
T Consensus 487 RlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~---- 561 (1387)
T KOG1517|consen 487 RLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQ---- 561 (1387)
T ss_pred HHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEE----
Confidence 4456 77788775 3321111111 2357999999999888998877643 3322 222223332 12222
Q ss_pred HHHHcCC---CCHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhh------cC
Q 009182 160 LFNMLSD---SSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASP-DEFTRLTAITWINEFVKL------GG 228 (541)
Q Consensus 160 L~~lL~D---~~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~------~~ 228 (541)
.+.| -++|-|..|+-.|..+++.++.....- -.+++.+.+.+++++ ++..|+=++-.|+.+=+- .|
T Consensus 562 ---vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G 638 (1387)
T KOG1517|consen 562 ---VLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSG 638 (1387)
T ss_pred ---EecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcc
Confidence 3333 246899999999999987765321111 257888999999985 788887666555544222 22
Q ss_pred cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 009182 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (541)
Q Consensus 229 ~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~ 308 (541)
..- .--.-+...++|+.|+||.+|.=++|.+.....++ +++=..++-+.+.-+...++..
T Consensus 639 ~r~-----~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~-----fde~~~~~~~~~~l~~~~~~~E---------- 698 (1387)
T KOG1517|consen 639 RRD-----NAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDN-----FDEQTLVVEEEIDLDDERTSIE---------- 698 (1387)
T ss_pred ccc-----cHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccc-----cchhhhhhhhhhcchhhhhhHH----------
Confidence 211 11234455778999999999999999886554321 2211111111111011111110
Q ss_pred hChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cchhhHHHHHH
Q 009182 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVV 359 (541)
Q Consensus 309 ~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~-~~~~~f~~~m~ 359 (541)
.....-.-.++..++|.++.||..+...++++. ++..+|.-++-
T Consensus 699 -------~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 699 -------DLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred -------HHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 011111135778899999999999999999988 44555555544
No 189
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.93 E-value=8.4 Score=39.33 Aligned_cols=199 Identities=14% Similarity=0.081 Sum_probs=119.5
Q ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hhcCcCcccc
Q 009182 158 DGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFV-KLGGDQLVPY 234 (541)
Q Consensus 158 ~~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~-~~~~~~l~p~ 234 (541)
+.|.++|+=. ..-|-..|-+.-+.+.+.++... ..|+.-..+-+........-.||-..+.-+..+. .+++ .+.|.
T Consensus 57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~ 135 (307)
T PF04118_consen 57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPC 135 (307)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHH
Confidence 3344444322 23455555555555555554221 1122222333333333334456766666666543 4444 89999
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh---
Q 009182 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR--- 311 (541)
Q Consensus 235 l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~--- 311 (541)
++.++..+++++.|+..|.-+...+....+...++.+ .+...+-..+. .+...|..|+.|+..-..+..
T Consensus 136 l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~ 207 (307)
T PF04118_consen 136 LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDE 207 (307)
T ss_pred HHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccc
Confidence 9999999999999988888777777777776665542 23333322222 345679999999864443322
Q ss_pred --------HH-HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc----------chhhHHHHHHHHHHhc
Q 009182 312 --------TE-VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----------DLQHFRQLVVFLVHNF 365 (541)
Q Consensus 312 --------~~-i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~----------~~~~f~~~m~~LL~~~ 365 (541)
.. +.+--.-++.++..+|.|++-.|+..++++|-.-.. ..+....++.+-++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~~~~~~~~~d~~~Lv~a~l~~~ 280 (307)
T PF04118_consen 208 LSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSPVLQSLLSPEDKELLVMAALKVV 280 (307)
T ss_pred cccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCcchhhhCCHHHHHHHHHHHHHHH
Confidence 11 223344567799999999999999999998776541 1345556666666655
No 190
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.80 E-value=7.1 Score=38.18 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=105.4
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCC
Q 009182 198 AEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 276 (541)
Q Consensus 198 i~~Ll~-~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~ 276 (541)
+|.++. ..+..++..+...+..+.+++.... .-.|.++.++.........+.+..+.+....+ ...++ ..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~l---w~~~~--r~ 72 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLL---WKAND--RH 72 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHH---HHhCc--hH
Confidence 344554 4566788888888888888776552 23677777777776666666544444433333 33221 11
Q ss_pred hHhHHHHHHH---h----c--CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q 009182 277 VGPILSIATR---Q----L--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLEVHAC 346 (541)
Q Consensus 277 l~~il~~L~~---~----L--~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L-~D~~~~V~~~~~~~L~~ 346 (541)
++.+-+.+.. . . .+..++...+....+..+....|+ +-.++++.+...| .+.++.++..+++.++.
T Consensus 73 f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 73 FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2222223322 1 1 234566677766777788888877 6778888888888 67777888899999999
Q ss_pred Hhc-chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhc
Q 009182 347 IAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (541)
Q Consensus 347 i~~-~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~ 385 (541)
+++ .--.|.+.-..+.+.+..+. .+.+++.||.
T Consensus 149 Lc~~~vvd~~s~w~vl~~~l~~~~------rp~v~~~l~~ 182 (234)
T PF12530_consen 149 LCEAEVVDFYSAWKVLQKKLSLDY------RPLVLKSLCS 182 (234)
T ss_pred HHHHhhccHHHHHHHHHHhcCCcc------chHHHHHHHH
Confidence 994 33456666666666663332 2556665553
No 191
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=5.6 Score=48.90 Aligned_cols=225 Identities=13% Similarity=0.121 Sum_probs=137.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCC-CHHHHHHH-HHHHHHHhHhhcccchhcHh
Q 009182 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (541)
Q Consensus 36 ~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~-d~~VR~~A-~~L~~l~kdi~~e~~~~~l~ 113 (541)
.+...+..+++..|-++++++..++...+..- +..++.+..++-+++. |+.-|.|- -++..+.|..+.-....-+.
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~--f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAP--FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 35667788999999999999999988775432 2345666666555444 55555555 66777778665432222344
Q ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHc-CCC--CHHHHHHHHHHHH------HHH
Q 009182 114 EFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML-SDS--SHEIRQQADSALW------EFL 183 (541)
Q Consensus 114 ~~iP~L~e~l~d~-~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL-~D~--~~eVR~~a~~~L~------~ll 183 (541)
.=+-.+....+|. .|.|+...+..+..+....+.-+..+...-+.-+.+++ +++ ..+|+..-.+++. .++
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ali 1037 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALI 1037 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHH
Confidence 4466777788884 56999999999987765544433445555455444444 444 4566666656655 565
Q ss_pred HHhcCCCCCCh--------HH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHH
Q 009182 184 QEIKNSPSVDY--------GR-MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 254 (541)
Q Consensus 184 ~~i~~~~~~~~--------~~-ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR 254 (541)
...+..-.++. .. ..-...-...++++.++.+++..+..+.-..+... ....+++.+...++.+.--.|
T Consensus 1038 ttlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~--n~~~lV~~L~~~l~s~~~i~r 1115 (2067)
T KOG1822|consen 1038 TTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV--NLDSLVLQLCSLLSSSYLILR 1115 (2067)
T ss_pred HhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc--cHHHHHHHHHHHhcchhhhhh
Confidence 55554322221 11 11111112344578888888887777655555433 467788888877776655555
Q ss_pred HHHHHHHHHH
Q 009182 255 VVARETNEEL 264 (541)
Q Consensus 255 ~~A~~~~~~L 264 (541)
.++..+..++
T Consensus 1116 ~~~~~clrql 1125 (2067)
T KOG1822|consen 1116 RASFSCLRQL 1125 (2067)
T ss_pred hhHHhhhhHH
Confidence 5555554444
No 192
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.62 Score=48.37 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCh
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDY 194 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~-~~~~~ 194 (541)
+.-+.-.+.+.|..||+-++.-+..+....+..+..++-.+++.+..+..|.+..||....+.++.++-..... .++.+
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 33444567889999999999999987776666777788888898999999999999999999988876544322 24567
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC
Q 009182 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD 248 (541)
Q Consensus 195 ~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d 248 (541)
.-+++++...+.+.-+++|.-++-.+.-++.-.++.+..+...+++.....++.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 788888888899999999999998888888888777766666666655555543
No 193
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.64 E-value=1.1 Score=46.69 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=91.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHhhcCc
Q 009182 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-------DEFTRLTAITWINEFVKLGGD 229 (541)
Q Consensus 157 L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~-------~~~vr~~al~wL~~l~~~~~~ 229 (541)
+..+...+.+.+..-|..| |..+ . .++.++.++|+++..+.+. +...-...+..+..+..-..-
T Consensus 180 f~~It~a~~~~~~~~r~~a---L~sL----~--tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 180 FEEITEALVGSNEEKRREA---LQSL----R--TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHhCCCHHHHHHH---HHHh----c--cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 3344445556666667766 3333 2 2467899999998876543 222222333444445444556
Q ss_pred CcccchhhHHHHHhhhcCC----------CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC--CHHHHH
Q 009182 230 QLVPYYADILGAILPCISD----------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE--WEATRI 297 (541)
Q Consensus 230 ~l~p~l~~llp~ll~~l~d----------~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~--~~~~R~ 297 (541)
.+-||+-.++|.++.|+.. .+-.+|+-|.+..+.+.+.+++....+ .+.+...+.+.+.++ ...++.
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l-~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL-QPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHcCCCCCcchhh
Confidence 6789999999999999853 223689999999998887776542221 245667777777654 344688
Q ss_pred HHHHHHHHHHh
Q 009182 298 EALHWISTLLN 308 (541)
Q Consensus 298 aal~wL~~L~~ 308 (541)
.|+..+..++.
T Consensus 330 GAi~GL~~lG~ 340 (343)
T cd08050 330 GAIVGLSALGP 340 (343)
T ss_pred HHHHHHHHhCc
Confidence 88888877753
No 194
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=17 Score=41.72 Aligned_cols=153 Identities=10% Similarity=0.130 Sum_probs=102.5
Q ss_pred HHH-HHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC--ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHh
Q 009182 211 FTR-LTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (541)
Q Consensus 211 ~vr-~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~--~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~ 287 (541)
-.| .++++-+...+...|....+.+|+++...- ..+.+ +++.-..+....|.+..-.++.+ ..+...+|.|.+.
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~a-sik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSA-SIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcc-ccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHHHH
Confidence 334 455677777888777777777777776544 23344 55655666677777766665543 3356788999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhc------chhhHHHHHH
Q 009182 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIAK------DLQHFRQLVV 359 (541)
Q Consensus 288 L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~--~~~V~~~~~~~L~~i~~------~~~~f~~~m~ 359 (541)
+.... .-..+..-+..+.+-|+.++.||.+.++.+.-..+.-. ++.+|.+..+.++...+ ..+|+.+++.
T Consensus 558 Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 558 LHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred hcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 95422 23334445899999999999999999998777666532 45666666666666552 3567777777
Q ss_pred HHHHhcccc
Q 009182 360 FLVHNFRVD 368 (541)
Q Consensus 360 ~LL~~~~~~ 368 (541)
-++.-+..+
T Consensus 636 ~il~qle~~ 644 (982)
T KOG2022|consen 636 PILSQLEIN 644 (982)
T ss_pred HHHHHHHHh
Confidence 777665433
No 195
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=93.48 E-value=12 Score=39.87 Aligned_cols=300 Identities=13% Similarity=0.125 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhhhHH-------HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhH
Q 009182 45 DSRVRYYACEALYNIAKVVRGDFIIFF-------NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFI 116 (541)
Q Consensus 45 d~~VR~~A~eaL~~i~k~~~~~~~~~~-------~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~i 116 (541)
...+..|...-+..+...... ....| ++.+..+.++++.+|.-+...| ..|..++..-........++.+.
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~-~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~ 145 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDT-RVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYF 145 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchH-HHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHH
Confidence 455556655455554433211 11111 2345556667777777777767 66666543111111223445566
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhcCCC--C
Q 009182 117 PLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSP--S 191 (541)
Q Consensus 117 P~L~e~l~d~-~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~--~eVR~~a~~~L~~ll~~i~~~~--~ 191 (541)
+.+...+... +...+..++.++..+....+--..-.=...++.|...++-.. ....-.+.-|+=.+ .+.... .
T Consensus 146 ~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL--SF~~~~~~~ 223 (429)
T cd00256 146 NWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL--TFNPHAAEV 223 (429)
T ss_pred HHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH--hccHHHHHh
Confidence 6666666543 467777788888887766653211111124455555554322 22233332222211 121100 0
Q ss_pred CChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcC--cccchhhHH----HHHhhhcC---CCChhHHHHHHHHH
Q 009182 192 VDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQ--LVPYYADIL----GAILPCIS---DKEEKIRVVARETN 261 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~~~~~--l~p~l~~ll----p~ll~~l~---d~~~~iR~~A~~~~ 261 (541)
..-..+++.+++-.+.. .+.|-+.++..+.++....... -..+.+.++ +.+++.|. .+++++.+.-....
T Consensus 224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~ 303 (429)
T cd00256 224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLT 303 (429)
T ss_pred hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 11245777777765543 3445445565666666543100 111222222 22333333 35777765433332
Q ss_pred HHHHHhhcC------------CC----------CC-C---------ChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHh
Q 009182 262 EELRAIKAD------------PA----------DG-F---------DVGPILSIATRQLS-SEWEATRIEALHWISTLLN 308 (541)
Q Consensus 262 ~~L~~~i~~------------~~----------~~-~---------~l~~il~~L~~~L~-~~~~~~R~aal~wL~~L~~ 308 (541)
..|-+.+.. .| +. | +=-+++..|.+.+. +.+..+---|..=+|.+.+
T Consensus 304 e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr 383 (429)
T cd00256 304 EELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVR 383 (429)
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHH
Confidence 222221111 00 00 0 11367788888884 3344444445566889999
Q ss_pred hChHHH--hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 309 RHRTEV--LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 309 ~~~~~i--~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
..|.+- ..-+. .=..+++.+++++++||..|+.++.++-
T Consensus 384 ~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 384 HYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 887553 22111 2346889999999999999999988764
No 196
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.43 E-value=1.1 Score=39.92 Aligned_cols=127 Identities=16% Similarity=0.207 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHhhc-ccc--------------hhc
Q 009182 47 RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT-ESD--------------QFS 111 (541)
Q Consensus 47 ~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi~~-e~~--------------~~~ 111 (541)
-||...|.++..+++..- -..|++.++.+.+.++.....+..+-..|..+.+++.. ... ...
T Consensus 3 ~i~~kl~~~l~~i~~~~~---P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDW---PQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHT---TTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHC---hhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 477888888888886542 23467788888888877533333333777777777763 100 122
Q ss_pred HhhhHHHHHHHhcCCC----HHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 009182 112 IEEFIPLLRERMNVLN----PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~----~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L 179 (541)
.+.++..+.+.+.... +.....++++++...+..+.+.+.. ..+++.+++++.+++ .|..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 4555555555555422 7888999999998888776655444 448899999995554 488887775
No 197
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.43 E-value=3.7 Score=43.80 Aligned_cols=224 Identities=16% Similarity=0.222 Sum_probs=107.5
Q ss_pred hhhhc-chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc---hhhhhHHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHH
Q 009182 27 ETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSADSDA--NVQSAAHLLDRLV 100 (541)
Q Consensus 27 ~~~l~-~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~---~~~~~~~~~i~~~L~kl~~D~d~--~VR~~A~~L~~l~ 100 (541)
.+|++ .++..++..|..+|+|-|.+....+..+-.... ..+. ..+-..+.+.+.+++. .|-..-+.++..+
T Consensus 127 ~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir---~~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 127 KKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR---KSINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp TTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH---HHHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 44666 477889999999999999999988887664432 2222 2333344444433332 1211112233333
Q ss_pred hHhhccc----chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHH
Q 009182 101 KDIVTES----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQAD 176 (541)
Q Consensus 101 kdi~~e~----~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~ 176 (541)
++....- ..+-...++|...... -...-+-+..++..+.+.-+ ...+.++.++++.---++ ..+++
T Consensus 204 ~gf~~plk~eh~~fl~~vllPLh~~~~---~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~llk~WP~t~--s~Kev- 273 (409)
T PF01603_consen 204 NGFAVPLKEEHKQFLRKVLLPLHKSPH---LSSYHQQLSYCVVQFLEKDP----SLAEPVIKGLLKHWPKTN--SQKEV- 273 (409)
T ss_dssp TT--SS--HHHHHHHHHTTGGGGGSTG---GGGTHHHHHHHHHHHHHH-G----GGHHHHHHHHHHHS-SS---HHHHH-
T ss_pred hccCCCCcHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHhCCCCC--chhHH-
Confidence 3221100 0122222233221110 01223333444443332222 233344555555442222 22222
Q ss_pred HHHHHHHHHhcCCCCCC----hHHHHHHHHHhcCCCCHHHHHHHHH-HHHHH-HhhcCcCcccchhhHHHHHhhhcCC--
Q 009182 177 SALWEFLQEIKNSPSVD----YGRMAEILVQRAASPDEFTRLTAIT-WINEF-VKLGGDQLVPYYADILGAILPCISD-- 248 (541)
Q Consensus 177 ~~L~~ll~~i~~~~~~~----~~~ii~~Ll~~~~~~~~~vr~~al~-wL~~l-~~~~~~~l~p~l~~llp~ll~~l~d-- 248 (541)
-.|+.+-..+...+..+ ..++...+-.++++++..|...|+. |-.+. ..+.. .+-..++|.+.+.+..
T Consensus 274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~----~~~~~i~p~i~~~L~~~~ 349 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLIS----QNSRVILPIIFPALYRNS 349 (409)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHH----CTHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHH----hChHHHHHHHHHHHHHHH
Confidence 22333322222111112 3455666777899999999999884 65542 33322 2344555555555433
Q ss_pred --C-ChhHHHHHHHHHHHHHHh
Q 009182 249 --K-EEKIRVVARETNEELRAI 267 (541)
Q Consensus 249 --~-~~~iR~~A~~~~~~L~~~ 267 (541)
+ +..||..|.++...++++
T Consensus 350 ~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 350 KNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp SS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 2 678999999998877643
No 198
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=93.33 E-value=1.8 Score=47.36 Aligned_cols=219 Identities=18% Similarity=0.215 Sum_probs=135.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhc-----------CCCHHHHHHHHHHHHH
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN-----------VLNPYVRQFLVGWITV 140 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~-----------d~~~~vR~~a~~~l~~ 140 (541)
+.++.+.-+.+|+..+|.+.| ..|.|...+ . |. ..+|..|..... -.++.+|.-+++.+..
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~-~-ed-----~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k 309 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVS-L-ED-----PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK 309 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCC-C-CC-----HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH
Confidence 566666667799999999999 666665443 1 21 233544444444 2567888888887764
Q ss_pred hhcCCCchhhhchHHHHHHHHHHcCCC--CHHHHHHHHHHH---HHHHHHhcCCCCCChHHHHHHHHHh----cC-----
Q 009182 141 LDSVPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQQADSAL---WEFLQEIKNSPSVDYGRMAEILVQR----AA----- 206 (541)
Q Consensus 141 L~~~~~~~l~~~lp~~L~~L~~lL~D~--~~eVR~~a~~~L---~~ll~~i~~~~~~~~~~ii~~Ll~~----~~----- 206 (541)
+.. -....|..+..++.-+..+ +..+|..+.+.+ ....+.+. ...++.+-|.+... .+
T Consensus 310 --S~~---Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~---~~~l~~l~~~i~~~g~p~~~~~~~~ 381 (501)
T PF13001_consen 310 --SVI---AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS---PQILKLLRPVILSQGWPLIQDSSSQ 381 (501)
T ss_pred --hHH---HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcC---HHHHHHHHHHHHhcCcccccccccc
Confidence 111 1245677777777666655 566777776665 33333222 11234444554442 21
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC--CChHhHH
Q 009182 207 ---SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG--FDVGPIL 281 (541)
Q Consensus 207 ---~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~--~~l~~il 281 (541)
..+...|..+-+.||.++.-.+..+..- -.++.-++..+.++.+++|...++++..+...+....+. ......+
T Consensus 382 ~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~ 460 (501)
T PF13001_consen 382 SNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLL 460 (501)
T ss_pred CCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 2245678888899999888776654221 367778888888889999999999999887766543220 1112222
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHH
Q 009182 282 SIATRQL-SSEWEATRIEALHWISTLL 307 (541)
Q Consensus 282 ~~L~~~L-~~~~~~~R~aal~wL~~L~ 307 (541)
..+.... .+....+|.+|++|.....
T Consensus 461 ~~l~~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 461 ELLLLSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhC
Confidence 3333332 4555668999999976654
No 199
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.32 E-value=12 Score=48.96 Aligned_cols=296 Identities=16% Similarity=0.159 Sum_probs=165.2
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHHHh---Hhhc-ccch---hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 009182 74 IFDALCKLSADSDANVQSAA-HLLDRLVK---DIVT-ESDQ---FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-V 144 (541)
Q Consensus 74 i~~~L~kl~~D~d~~VR~~A-~~L~~l~k---di~~-e~~~---~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~-~ 144 (541)
.+|++...++..+.+++.++ .+++.... .++. .... .-...+++.+...-+++.++-|..-+..|+.+.. .
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 35555555666666666666 44433321 1111 1001 1234556666667777777777777766665543 3
Q ss_pred CCchhhhchHHHHHHHHHHcCCCCHHHHH----HHHHHHHHHHHHhcCCCC------CChHHHHHHHHHhcCCCCHHHHH
Q 009182 145 PDIDMLGFLPDFLDGLFNMLSDSSHEIRQ----QADSALWEFLQEIKNSPS------VDYGRMAEILVQRAASPDEFTRL 214 (541)
Q Consensus 145 ~~~~l~~~lp~~L~~L~~lL~D~~~eVR~----~a~~~L~~ll~~i~~~~~------~~~~~ii~~Ll~~~~~~~~~vr~ 214 (541)
+..-+..+.-+++.+++..+.|...++.. .+..++..+++.+..... ....+++..+.....++++.||.
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~ 1144 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVRE 1144 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 43445677778899999999998766654 455555555554432111 12567888888899999999999
Q ss_pred HHHHHHHHHHhhcCcCcccchhhHHHHH-hhhcCCCChh-HHHHHHHHHHHHHHhhcCCCCCCChH--------------
Q 009182 215 TAITWINEFVKLGGDQLVPYYADILGAI-LPCISDKEEK-IRVVARETNEELRAIKADPADGFDVG-------------- 278 (541)
Q Consensus 215 ~al~wL~~l~~~~~~~l~p~l~~llp~l-l~~l~d~~~~-iR~~A~~~~~~L~~~i~~~~~~~~l~-------------- 278 (541)
.+..-+..+.+..+......+...=..+ .+-.....+. -+.......+...-.....+..+++.
T Consensus 1145 ~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La 1224 (3550)
T KOG0889|consen 1145 FSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALA 1224 (3550)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhh
Confidence 9999999888877655432222222222 1111111100 01111111111100010011111111
Q ss_pred -----hHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhhChH---HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009182 279 -----PILSIATRQLSS----EWEATRIEALHWISTLLNRHRT---EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (541)
Q Consensus 279 -----~il~~L~~~L~~----~~~~~R~aal~wL~~L~~~~~~---~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~ 346 (541)
+... +.+.... .....|.++++.+.......+- ...++-+.++..+.+.|.-+++++...+...+..
T Consensus 1225 ~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~ 1303 (3550)
T KOG0889|consen 1225 DAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRK 1303 (3550)
T ss_pred hhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 1111 1222211 1233488888888776666543 3456677888899999999999999988888877
Q ss_pred Hhcc-----hhhHHHHHHHHHHhccccch
Q 009182 347 IAKD-----LQHFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 347 i~~~-----~~~f~~~m~~LL~~~~~~~~ 370 (541)
+-.. .+.....|..++..+.+-++
T Consensus 1304 v~~~~~~~~ke~lq~~lrplL~~l~d~~~ 1332 (3550)
T KOG0889|consen 1304 VLAQDVKLPKELLQSHLRPLLMNLSDHNN 1332 (3550)
T ss_pred hhhccccccHHHHHhhHHHHHHhhhHhhh
Confidence 6633 33455677677776665544
No 200
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.28 E-value=1.8 Score=44.95 Aligned_cols=145 Identities=17% Similarity=0.311 Sum_probs=97.0
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcCC-------CHHHHHHHHHH
Q 009182 65 GDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL-------NPYVRQFLVGW 137 (541)
Q Consensus 65 ~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~-------~~~vR~~a~~~ 137 (541)
.+...||.++..++ .+.+..-|..| ++.+-++ ..+..++|.+..++.+. |-..=..++..
T Consensus 174 ~Elq~yf~~It~a~----~~~~~~~r~~a------L~sL~tD---~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~ 240 (343)
T cd08050 174 KELQLYFEEITEAL----VGSNEEKRREA------LQSLRTD---PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRM 240 (343)
T ss_pred HHHHHHHHHHHHHH----hCCCHHHHHHH------HHHhccC---CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 34446666665554 33455555554 2222222 34777888888888642 44555556777
Q ss_pred HHHhhcCCCchhhhchHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhcC
Q 009182 138 ITVLDSVPDIDMLGFLPDFLDGLFNMLS----------DSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAA 206 (541)
Q Consensus 138 l~~L~~~~~~~l~~~lp~~L~~L~~lL~----------D~~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~~ 206 (541)
+..|...+...+.+|+-.+++.++.++- |..-..|..|...++.+++.++.. .+. .+.++..+.+...
T Consensus 241 v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 241 VRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-YNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHc
Confidence 7788888888899999999999987662 233478999999999999988754 233 3667777777776
Q ss_pred CCC-H-HHHHHHHHHHHHH
Q 009182 207 SPD-E-FTRLTAITWINEF 223 (541)
Q Consensus 207 ~~~-~-~vr~~al~wL~~l 223 (541)
++. + .....|+.++..+
T Consensus 320 d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 320 DPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCCCCcchhhHHHHHHHHh
Confidence 654 2 3367788777654
No 201
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.24 E-value=6.5 Score=42.60 Aligned_cols=188 Identities=14% Similarity=0.177 Sum_probs=115.2
Q ss_pred hhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcCC--------CHHHHHHHHHH
Q 009182 66 DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL--------NPYVRQFLVGW 137 (541)
Q Consensus 66 ~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~--------~~~vR~~a~~~ 137 (541)
+..-||++|..++. +.++.-|+.| +..+-+++ .+..++|.+..++.+. |-..=.+++..
T Consensus 204 ElQlYy~~It~a~~----g~~~~~r~eA------L~sL~TDs---GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m 270 (576)
T KOG2549|consen 204 ELQLYYKEITEACT----GSDEPLRQEA------LQSLETDS---GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRM 270 (576)
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHH------HHhhccCc---cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHH
Confidence 44567777766653 3555566665 12234443 4677788888888641 22333345566
Q ss_pred HHHhhcCCCchhhhchHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Q 009182 138 ITVLDSVPDIDMLGFLPDFLDGLFNMLS----------DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS 207 (541)
Q Consensus 138 l~~L~~~~~~~l~~~lp~~L~~L~~lL~----------D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~ 207 (541)
...|...+...+-+|+-.++|.++.++- |..-.+|..|...+..+++.++.....--..++..+.+...|
T Consensus 271 ~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 271 VRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLD 350 (576)
T ss_pred HHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 6677777888888999999998885442 345678999999999999888643211136677888887776
Q ss_pred C--CHHHHHHHHHHHHHHHhh-cCcCcccchhhHHHHHhhhcCCC-Chh--HHHHHHHHHHHHHH
Q 009182 208 P--DEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDK-EEK--IRVVARETNEELRA 266 (541)
Q Consensus 208 ~--~~~vr~~al~wL~~l~~~-~~~~l~p~l~~llp~ll~~l~d~-~~~--iR~~A~~~~~~L~~ 266 (541)
. .+.....|+..+.+|... -...++|.+......+-+-+... ..+ .+..|..+.+.+.+
T Consensus 351 ~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk 415 (576)
T KOG2549|consen 351 NKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLK 415 (576)
T ss_pred CCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHH
Confidence 5 456677888888877542 22334455555554444444332 111 13344555555543
No 202
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.12 E-value=3.8 Score=38.60 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=49.4
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHh
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK 101 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~k 101 (541)
.++.++++..+++..||..|.+.+.-+.+ .+ +.+-.+.+|.+..+.+||++.+|+.| ..+..+.+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~---qG-LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR---QG-LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh---cC-CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 34567778889999999999988776654 22 22345889999999999999999999 55544443
No 203
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.10 E-value=4.5 Score=44.89 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=79.9
Q ss_pred HhhcCCCHHHHHHH-HHHHHHHhHhhccc-----chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch
Q 009182 80 KLSADSDANVQSAA-HLLDRLVKDIVTES-----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (541)
Q Consensus 80 kl~~D~d~~VR~~A-~~L~~l~kdi~~e~-----~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l 153 (541)
++++...-..|.+- +.+++++.+...+. -...++.++..+.|++.|.+|.+|.-++..+..+...+..- ..-=
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~-~~~r 384 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT-VGRR 384 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc-cchH
Confidence 57788888899888 88888877665532 13468889999999999999999999999888776554321 1112
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 154 p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
.++.......+.|.+.-||+.|.+.+..++..
T Consensus 385 ~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 385 HEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 24555566789999999999999999988854
No 204
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.88 E-value=10 Score=37.12 Aligned_cols=202 Identities=16% Similarity=0.148 Sum_probs=120.8
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh
Q 009182 116 IPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (541)
Q Consensus 116 iP~L~e-~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~ 194 (541)
+|.+.- .-+..+|.....++..+..++.... ...|.++..+-.+...++.+.+..+.+.+..+-+.= +..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~----~r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN----DRHF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC----chHH
Confidence 444444 4456889999989988888877652 557788888888888888888766666666555321 1223
Q ss_pred HHHHHHHHH---h----cC--CCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhc-CCCChhHHHHHHHHHHHH
Q 009182 195 GRMAEILVQ---R----AA--SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI-SDKEEKIRVVARETNEEL 264 (541)
Q Consensus 195 ~~ii~~Ll~---~----~~--~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l-~d~~~~iR~~A~~~~~~L 264 (541)
+.+-+.+.. + .. +..++.....-.-+..++...+. +-+.+++.+..++ .+.++.++..|.+....+
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 322223222 1 11 22344444444566777777666 5788888888888 677788887888877777
Q ss_pred HHhhcCCCCCCChHhHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhhC--hHHHhhhhHHHHHHHHHhcCCCCH
Q 009182 265 RAIKADPADGFDVGPILSIATRQLSSEWEA-TRIEALHWISTLLNRH--RTEVLHFLNDIFDTLLKALSDPSD 334 (541)
Q Consensus 265 ~~~i~~~~~~~~l~~il~~L~~~L~~~~~~-~R~aal~wL~~L~~~~--~~~i~~~l~~l~p~Ll~~L~D~~~ 334 (541)
.+ .+.+|+.....++...+..+.-+ +-.+-..|+..+..+. .++...+..+++..+=+..+..+.
T Consensus 150 c~-----~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 150 CE-----AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HH-----HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 52 23467888889999988433222 2222223333333332 222333445555555555555543
No 205
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.56 E-value=14 Score=37.97 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=93.5
Q ss_pred cHhhhHHHHHHHh----cCCCHHHHHH-HHHHHHHhhcCCCchhhhchHHHHHHHH----HHcCC---CCHHHHHHHHHH
Q 009182 111 SIEEFIPLLRERM----NVLNPYVRQF-LVGWITVLDSVPDIDMLGFLPDFLDGLF----NMLSD---SSHEIRQQADSA 178 (541)
Q Consensus 111 ~l~~~iP~L~e~l----~d~~~~vR~~-a~~~l~~L~~~~~~~l~~~lp~~L~~L~----~lL~D---~~~eVR~~a~~~ 178 (541)
..+.++|.+.+.+ +...|..|.. +++.+..+....+..+.+++|.+++.+| .|..+ ..|+.|..--+.
T Consensus 64 v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~L 143 (319)
T PF08767_consen 64 VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKL 143 (319)
T ss_dssp HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHH
Confidence 4556677766633 1233444433 2223333333333344466666666666 56654 358999888888
Q ss_pred HHHHHHHhcC----CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc---C-----cccchhhHHHHHhhhc
Q 009182 179 LWEFLQEIKN----SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---Q-----LVPYYADILGAILPCI 246 (541)
Q Consensus 179 L~~ll~~i~~----~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~---~-----l~p~l~~llp~ll~~l 246 (541)
+..+.+..-. -+...+..++..++-.+++++.+|...++..+.++.+-... + ...|+-.++..++..+
T Consensus 144 L~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vl 223 (319)
T PF08767_consen 144 LRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVL 223 (319)
T ss_dssp HHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777765421 11223788999999999999999999999888877653221 1 1245566777888888
Q ss_pred CCCC--hhHHHHHHHHHHHHHHhhc
Q 009182 247 SDKE--EKIRVVARETNEELRAIKA 269 (541)
Q Consensus 247 ~d~~--~~iR~~A~~~~~~L~~~i~ 269 (541)
.|+. ...+..+ .....+.+.+.
T Consensus 224 tD~~Hk~gf~~q~-~iL~~Lf~~ve 247 (319)
T PF08767_consen 224 TDSDHKSGFKLQS-QILSNLFRLVE 247 (319)
T ss_dssp HSTT-GGGHHHHH-HHHHHHHHHHH
T ss_pred HCcccHHHHHHHH-HHHHHHHHHHH
Confidence 8854 3333332 44445554444
No 206
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.52 E-value=6 Score=39.95 Aligned_cols=220 Identities=18% Similarity=0.220 Sum_probs=130.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC--C----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--D----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 157 L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~--~----~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
+..+.+.+.|-+-+-|+-+....+.+++-=.....+ + -.++++.++..-.+ .+++..+|-..+.|....-
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe--- 156 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE--- 156 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH---
Confidence 445566777777777777777777776522111111 1 25778888887443 5778888777676654421
Q ss_pred cccchhhH------HHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC---CCChHhHHHH-HHHhcCCCCHHHHHHHH
Q 009182 231 LVPYYADI------LGAILPCISDKEEKIRVVARETNEELRAIKADPAD---GFDVGPILSI-ATRQLSSEWEATRIEAL 300 (541)
Q Consensus 231 l~p~l~~l------lp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~---~~~l~~il~~-L~~~L~~~~~~~R~aal 300 (541)
++.++ .-.....++-+..+|-.-|.++...++..-+.... .-+++.+.+. -...+.++++.||..++
T Consensus 157 ---~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 157 ---FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred ---HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 11121 22333444555555555555555555422111000 0134555444 34455889999999999
Q ss_pred HHHHHHHhhChH--HHhhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcch----hh---H---HHHHHHHHHhcc
Q 009182 301 HWISTLLNRHRT--EVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKDL----QH---F---RQLVVFLVHNFR 366 (541)
Q Consensus 301 ~wL~~L~~~~~~--~i~~~l~--~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~----~~---f---~~~m~~LL~~~~ 366 (541)
..+|.+....|. .|..|.. +-+..++..|.|++.++...|..+..-...++ +- | .+=+..++.-|+
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~ 313 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFH 313 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhC
Confidence 999999988764 3566655 77888999999999999998888877776321 11 1 122344555555
Q ss_pred ccc----hhhhhhHHHHHHHhh
Q 009182 367 VDN----SLLEKRGALIIRRLC 384 (541)
Q Consensus 367 ~~~----~ll~~r~~~iir~Lc 384 (541)
+|+ ..+.++ +++|++.-
T Consensus 314 ~d~~~DeqF~dEk-~~~i~eI~ 334 (342)
T KOG1566|consen 314 TDRTEDEQFLDEK-AYLIKEIR 334 (342)
T ss_pred CCCCchhhhhhhH-HHHHHHHH
Confidence 443 444555 55665553
No 207
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.36 E-value=11 Score=42.23 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=96.9
Q ss_pred hhHHHHHhhhcCC----CChhHHHHHHHHHHHHHHhh-cCC--------CCCCChHhHHHHHHHhc----CCCCHHHHHH
Q 009182 236 ADILGAILPCISD----KEEKIRVVARETNEELRAIK-ADP--------ADGFDVGPILSIATRQL----SSEWEATRIE 298 (541)
Q Consensus 236 ~~llp~ll~~l~d----~~~~iR~~A~~~~~~L~~~i-~~~--------~~~~~l~~il~~L~~~L----~~~~~~~R~a 298 (541)
+.++..+...+.. .++.+|..|.-+.+.+..-. ... ......+.+++.+...+ ...+...+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 4566666655544 35678888877777765432 221 01122344555555554 3566778888
Q ss_pred HHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhh
Q 009182 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP---SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (541)
Q Consensus 299 al~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~---~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r 375 (541)
+|++||-++. +..+|.+.+.+.+. +..+|..|++++.++.. .+=+.+-+.++..|.+...-.|-|
T Consensus 510 ~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~--~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 510 YLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK--HCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG--T-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred HHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh--cCcHHHHHHHHHHhcCCCCChhHH
Confidence 8888887753 34566777777766 67899999999998863 334577777888887665545555
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHH
Q 009182 376 GALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQ 414 (541)
Q Consensus 376 ~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~ 414 (541)
.+.. ..|=..-++..+...++..+..|.+....+-+..
T Consensus 578 iaA~-~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 578 IAAY-LILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHHH-HHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHH-HHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 4432 2332334558899999999988888655444333
No 208
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=23 Score=39.75 Aligned_cols=395 Identities=16% Similarity=0.162 Sum_probs=200.9
Q ss_pred cchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhh--cCCCHHHHHHH-HHHHHHH
Q 009182 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS--ADSDANVQSAA-HLLDRLV 100 (541)
Q Consensus 24 ~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~--~D~d~~VR~~A-~~L~~l~ 100 (541)
+...+....++..+.+-+...++.- .|.||.-|+.+-+.+.... .-+-+.|++ .+...-||+-| -.+-++.
T Consensus 103 n~n~dl~klvin~iknDL~srn~~f---v~LAL~~I~niG~re~~ea---~~~DI~KlLvS~~~~~~vkqkaALclL~L~ 176 (938)
T KOG1077|consen 103 NENSDLMKLVINSIKNDLSSRNPTF---VCLALHCIANIGSREMAEA---FADDIPKLLVSGSSMDYVKQKAALCLLRLF 176 (938)
T ss_pred hcchHHHHHHHHHHHhhhhcCCcHH---HHHHHHHHHhhccHhHHHH---hhhhhHHHHhCCcchHHHHHHHHHHHHHHH
Confidence 3334455555666666666555553 3444444443322222211 222333544 45666788777 5555665
Q ss_pred hHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHc----------------
Q 009182 101 KDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML---------------- 164 (541)
Q Consensus 101 kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL---------------- 164 (541)
+... +..........+...+.|.+-.|-..+.+.|..+.+-.+.+.-.-+|.-+..|....
T Consensus 177 r~sp---Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP 253 (938)
T KOG1077|consen 177 RKSP---DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVP 253 (938)
T ss_pred hcCc---cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCC
Confidence 5211 122333445555566666555555555555555555544443333332222222111
Q ss_pred ----------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHH-H-HHHHHHHhh
Q 009182 165 ----------------SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTA-I-TWINEFVKL 226 (541)
Q Consensus 165 ----------------~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~a-l-~wL~~l~~~ 226 (541)
.-.++.+|....+++++++....+.+ ..++.......+| + +.|.-...+
T Consensus 254 ~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~-------------~~k~vq~~na~naVLFeaI~l~~h~ 320 (938)
T KOG1077|consen 254 APWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPP-------------KSKKVQHSNAKNAVLFEAISLAIHL 320 (938)
T ss_pred ChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCc-------------cccchHhhhhHHHHHHHHHHHHHHc
Confidence 11233344444444444443221100 0011112223333 3 344433333
Q ss_pred cCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhH---HHHHHHhcC-CCCHHHHHHHHHH
Q 009182 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPI---LSIATRQLS-SEWEATRIEALHW 302 (541)
Q Consensus 227 ~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~i---l~~L~~~L~-~~~~~~R~aal~w 302 (541)
.++.- -+.+-+..+-+.+++.+.++|-.|.+..-.+ +... ...+.+ .+.+...|+ ..+...|..|++.
T Consensus 321 D~e~~--ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L---~ss~---~s~davK~h~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 321 DSEPE--LLSRAVNQLGQFLSHRETNIRYLALESMCKL---ASSE---FSIDAVKKHQDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred CCcHH--HHHHHHHHHHHHhhcccccchhhhHHHHHHH---Hhcc---chHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 33221 2567777777888888999998876655444 3321 112221 334455565 6688899999999
Q ss_pred HHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHH-HHHH---HHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHH
Q 009182 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL-LVLE---VHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGAL 378 (541)
Q Consensus 303 L~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~-~~~~---~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~ 378 (541)
|.++.+..-. ..++..+++-|...+..+|+ ++++ +-.+++.+-..|-.++-.|++.-.+-.. -+.
T Consensus 393 LY~mcD~~Na------k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs-----deV 461 (938)
T KOG1077|consen 393 LYAMCDVSNA------KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS-----DEV 461 (938)
T ss_pred HHHHhchhhH------HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc-----HHH
Confidence 9998887643 34455555555545555555 3333 2333555566777777777776553321 256
Q ss_pred HHHHhhccCChhhHHHHHHHHhcccCCh-HHHHHHHHHhHHhhcCcHhHHHHHHHHhhccCCcchhHHHHHHHHhhccCh
Q 009182 379 IIRRLCVLLDAERVYRELSTILEGEADL-DFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSP 457 (541)
Q Consensus 379 iir~Lc~~l~~e~i~~~l~~il~~~~d~-~f~~~~v~~L~~il~t~~el~~~R~~L~~~~~~~~~~~lf~~l~~~w~~n~ 457 (541)
|.|-..--+|-|.+-++-++-+-+.-+. .--+.||..=.-|| .||-+.+-+ -..-.....|..+++..--.+
T Consensus 462 W~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiL------GEfg~LIa~-~prss~~~qFsllh~K~~~~s 534 (938)
T KOG1077|consen 462 WYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYIL------GEFGNLIAD-DPRSSPAVQFSLLHEKLHLCS 534 (938)
T ss_pred HHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhh------hhhhhhhcC-CCCCChHHHHHHHHHHhccCC
Confidence 7766666667666655555544333221 23355666655554 455554543 223335789999999984444
Q ss_pred HHHHHHHHHHh
Q 009182 458 MAIISLCLLAQ 468 (541)
Q Consensus 458 ~~~~slcll~~ 468 (541)
.+|- |||-.
T Consensus 535 ~~tr--~lLLt 543 (938)
T KOG1077|consen 535 PVTR--ALLLT 543 (938)
T ss_pred hhHH--HHHHH
Confidence 4444 44444
No 209
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.29 E-value=16 Score=37.89 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=129.5
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh-chh-------hhhHHHHHHHHHHHhhcCCCHHHHHHHHHH----
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV-RGD-------FIIFFNQIFDALCKLSADSDANVQSAAHLL---- 96 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~-~~~-------~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L---- 96 (541)
|-..+++.++.++..=+.+.|+-++....++.+.- ++. +..+.+++++.|.++.++||...--|.-.-
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTT
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHh
Confidence 34567778888999999999999998888877653 221 224448999999999999987665554210
Q ss_pred -HHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc----hhhhchHHHHHHHHHHcCCCCHHH
Q 009182 97 -DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI----DMLGFLPDFLDGLFNMLSDSSHEI 171 (541)
Q Consensus 97 -~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~----~l~~~lp~~L~~L~~lL~D~~~eV 171 (541)
..+++-++. ++ .+-.+++.+..++.+|-.-+.+.+..+-...+. -+..+.+.|....-+++..++.-.
T Consensus 153 ~e~l~~~iL~-~~------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 153 HESLAKIILY-SE------CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp SHHHHHHHHT-SG------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred hHHHHHHHhC-cH------HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 223333332 22 244477888889999999999988876554332 245677788887778888899999
Q ss_pred HHHHHHHHHHHHHHhcCCC----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 009182 172 RQQADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (541)
Q Consensus 172 R~~a~~~L~~ll~~i~~~~----~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~ 227 (541)
|+.+.+.|++++..=.... ...-+.-+..+...++|+...+|..|..-...|+.-+
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999999984211000 0123556677888899999999999998888776543
No 210
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.24 E-value=4.4 Score=41.42 Aligned_cols=198 Identities=12% Similarity=0.152 Sum_probs=95.3
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc--hhhhhHHH-----HHHHHHHHhhcCCCHHHHHHH-HHHHHH
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDFIIFFN-----QIFDALCKLSADSDANVQSAA-HLLDRL 99 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~--~~~~~~~~-----~i~~~L~kl~~D~d~~VR~~A-~~L~~l 99 (541)
.|..-++..+-.. .++..+..|+..-+.++...-+ .+.+..+. ..+..+.++++.+|.-++..| ..|..+
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444444333333 5567777777777777665432 12222221 278888888888999999888 777766
Q ss_pred HhHhhcccchhcHhhhHHHHHHHhc----CCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHc-----CCCCHH
Q 009182 100 VKDIVTESDQFSIEEFIPLLRERMN----VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML-----SDSSHE 170 (541)
Q Consensus 100 ~kdi~~e~~~~~l~~~iP~L~e~l~----d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL-----~D~~~e 170 (541)
+..-... .......+++.+...+. ..+...+..++.++..+...++.-....=...++.+...+ .++...
T Consensus 133 l~~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 133 LSQGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp HTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred HHcCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 5422111 11111344555555554 3455677889999998887765332222256666666666 333333
Q ss_pred H--HHHHHHHHHHHHHHhcCCCCCCh--HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcC
Q 009182 171 I--RQQADSALWEFLQEIKNSPSVDY--GRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 171 V--R~~a~~~L~~ll~~i~~~~~~~~--~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~~~~~ 230 (541)
+ .-.+.-|+-.+ .+.......+ ..++|.+.+..++. .+.|-+.++..+.++++..+..
T Consensus 212 ~Ql~Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 212 IQLQYQALLCLWLL--SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp HHHHHHHHHHHHHH--TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT
T ss_pred hhHHHHHHHHHHHH--hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH
Confidence 3 33343333222 1110000000 22777777665433 5666666777777777666544
No 211
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.15 E-value=16 Score=40.61 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=93.3
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHhcCC
Q 009182 116 IPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS----SHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 116 iP~L~e~l~d~--~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~----~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
+..+.+.+... ++..+..++..+......|.. ++++.++.++.++ .+.+|..|.-+++.++......
T Consensus 359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~-------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTE-------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH-------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444432 233344444444444444544 4566666677654 5678999999999998755433
Q ss_pred CCC-C---hHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcC-C--CChhHHHHHH
Q 009182 190 PSV-D---YGRMAEILVQRA----ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-D--KEEKIRVVAR 258 (541)
Q Consensus 190 ~~~-~---~~~ii~~Ll~~~----~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~-d--~~~~iR~~A~ 258 (541)
... + .+.+++++...+ +..+...+..++..||++ + .|..++.+.+.+. + ..+.+|.+|.
T Consensus 432 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~---g-------~~~~i~~l~~~l~~~~~~~~~iR~~Av 501 (574)
T smart00638 432 TPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA---G-------HPSSIKVLEPYLEGAEPLSTFIRLAAI 501 (574)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc---C-------ChhHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 221 1 356777766543 334555566666666543 2 2444444444443 3 3567898888
Q ss_pred HHHHHHHHhhcCCCCCCChHhHHHHHHHhcC--CCCHHHHHHHHHHH
Q 009182 259 ETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWI 303 (541)
Q Consensus 259 ~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~--~~~~~~R~aal~wL 303 (541)
.+...+.+.. -..+-+++...+. +++.+.|++|+..+
T Consensus 502 ~Alr~~a~~~--------p~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 502 LALRNLAKRD--------PRKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHhC--------chHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 8776553221 2456667777764 46778999988743
No 212
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.13 E-value=3.7 Score=45.80 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=92.6
Q ss_pred HHHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhh-cCCCHHHH
Q 009182 12 IVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS-ADSDANVQ 90 (541)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~-~D~d~~VR 90 (541)
|.|.--.+.++... +...+.|+|-+..+++|.+.++...+...+..+++....... =+.|+|.+.++. ......||
T Consensus 370 i~e~mdlL~~Kt~~-e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~~l~~~tt~~~vk 446 (700)
T KOG2137|consen 370 ILENMDLLKEKTPP-EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRLKNLAFKTTNLYVK 446 (700)
T ss_pred HHhhHHHHHhhCCh-HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhhcchhcccchHHH
Confidence 45555566667666 888999999999999999999999999998888887753332 246888888864 45566777
Q ss_pred HHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009182 91 SAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS 143 (541)
Q Consensus 91 ~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~ 143 (541)
..+ .++..+++.+ +...+-..++.+.++++..+|.+....+.....+.-
T Consensus 447 vn~L~c~~~l~q~l----D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 447 VNVLPCLAGLIQRL----DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred HHHHHHHHHHHHHH----HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 766 6666666422 234444557777888999999999998888876644
No 213
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=25 Score=39.66 Aligned_cols=285 Identities=14% Similarity=0.118 Sum_probs=144.2
Q ss_pred hhhcchhhhhcchh-HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHH
Q 009182 21 DLFFYSETILQQIV-PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDR 98 (541)
Q Consensus 21 ~~~~~~~~~l~~ii-~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~ 98 (541)
+++.-.+.-+++++ +.|...|+++.--.|.-||+-+..+....+.... .-++++...+++.|.+--|+-.| -++..
T Consensus 448 tk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~i--ll~aye~t~ncl~nn~lpv~ieAalAlq~ 525 (970)
T COG5656 448 TKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGI--LLEAYENTHNCLKNNHLPVMIEAALALQF 525 (970)
T ss_pred ccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 34444455666655 8899999999999999999998888655654332 34788899999988888888777 66666
Q ss_pred HHhHhhcccchhcHhhhHHHHHHHh----cCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHH----H----cC-
Q 009182 99 LVKDIVTESDQFSIEEFIPLLRERM----NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN----M----LS- 165 (541)
Q Consensus 99 l~kdi~~e~~~~~l~~~iP~L~e~l----~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~----l----L~- 165 (541)
++-+- .-...+..-+|..++.+ ++-+-++- -+.+..+.+--+.++.+|-|++...|.+ + +.
T Consensus 526 fi~~~---q~h~k~sahVp~tmekLLsLSn~feiD~L---S~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~en 599 (970)
T COG5656 526 FIFNE---QSHEKFSAHVPETMEKLLSLSNTFEIDPL---SMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLEN 599 (970)
T ss_pred HHhch---hhhHHHHhhhhHHHHHHHHhcccccchHH---HHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcC
Confidence 54321 11122333344444433 33233322 2333334444445566666666555543 2 11
Q ss_pred --CCCH--HHHHH-HHHHHHHHHHHhcCC-CCCC-----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc
Q 009182 166 --DSSH--EIRQQ-ADSALWEFLQEIKNS-PSVD-----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY 234 (541)
Q Consensus 166 --D~~~--eVR~~-a~~~L~~ll~~i~~~-~~~~-----~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~ 234 (541)
|++. |=++. |...|......+-.- ..++ ..++.|++---..+....+=..|+..+....- ...++.|-
T Consensus 600 s~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf-~skeI~pi 678 (970)
T COG5656 600 SSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF-MSKEIEPI 678 (970)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH-HHHHhhhh
Confidence 2222 22333 223333332222110 1121 12222222222222222333344444432211 12234466
Q ss_pred hhhHHHHHhhhcCCCCh-hHHHHHHHHHHHHHHhhcCC-CCCCChHhH-HHHHHHhcCCCCH--HHHHHHHHHHHHHHhh
Q 009182 235 YADILGAILPCISDKEE-KIRVVARETNEELRAIKADP-ADGFDVGPI-LSIATRQLSSEWE--ATRIEALHWISTLLNR 309 (541)
Q Consensus 235 l~~llp~ll~~l~d~~~-~iR~~A~~~~~~L~~~i~~~-~~~~~l~~i-l~~L~~~L~~~~~--~~R~aal~wL~~L~~~ 309 (541)
.+++...+.+++.++.. +--+.+..+...+...-++. ...-.|.++ +.+....+.+++- ..++.+.+.+..+.-.
T Consensus 679 mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 679 MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 77788888888777553 21222222222221111110 111234444 4556666655543 6788898888777777
Q ss_pred ChHHH
Q 009182 310 HRTEV 314 (541)
Q Consensus 310 ~~~~i 314 (541)
..+++
T Consensus 759 ~rd~L 763 (970)
T COG5656 759 IRDEL 763 (970)
T ss_pred ccchh
Confidence 76654
No 214
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.76 E-value=9.1 Score=46.35 Aligned_cols=156 Identities=17% Similarity=0.103 Sum_probs=102.9
Q ss_pred hhcHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHh--hcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 109 QFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVL--DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l-~d~~~~vR~~a~~~l~~L--~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
......|+..+.... .+.++++|..+++-+..+ ...-+ ..-....++...+.+.+.|..-+||+.|+.+|..+++.
T Consensus 1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~ 1599 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQG 1599 (1710)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhc
Confidence 344566777777433 347889999988877633 22211 22355668888899999999999999999999999863
Q ss_pred hcCCCCCChHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 009182 186 IKNSPSVDYGRMAEILVQRAAS--PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (541)
Q Consensus 186 i~~~~~~~~~~ii~~Ll~~~~~--~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~ 263 (541)
-.. ...++.........+. .+..-+..|..+++.++-..|-.+--|+|+.+..+-....++ ..+++++.++...
T Consensus 1600 s~~---~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvse 1675 (1710)
T KOG1851|consen 1600 SKF---QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSE 1675 (1710)
T ss_pred ccc---ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHH
Confidence 221 1122333333333222 234446778888898888777766667777777777666665 5578888888777
Q ss_pred HHHhhc
Q 009182 264 LRAIKA 269 (541)
Q Consensus 264 L~~~i~ 269 (541)
+-+.-.
T Consensus 1676 Frrth~ 1681 (1710)
T KOG1851|consen 1676 FRRTHA 1681 (1710)
T ss_pred HHHHhh
Confidence 765543
No 215
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.73 E-value=4.5 Score=38.13 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=59.8
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-chhhH-HH
Q 009182 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHF-RQ 356 (541)
Q Consensus 279 ~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-~~~~f-~~ 356 (541)
..++.+.+.+.+++...|..|++.+..+.+.. +. +=...+|+++....||++.+++.|.+.+..+.+ .+.++ ..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG---Lv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG---LV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC---CC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45666777778889999999999988776643 21 123578999999999999999999999999873 33322 23
Q ss_pred HHHHHHHhc
Q 009182 357 LVVFLVHNF 365 (541)
Q Consensus 357 ~m~~LL~~~ 365 (541)
++.++-..|
T Consensus 84 ~~~gi~~af 92 (187)
T PF12830_consen 84 YSEGIRLAF 92 (187)
T ss_pred HHHHHHHHH
Confidence 444444433
No 216
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.59 E-value=2.5 Score=36.01 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chhhHHHHHH
Q 009182 290 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVV 359 (541)
Q Consensus 290 ~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~~f~~~m~ 359 (541)
+.+...|..++..++.+.+.+++.+.++.+++...|..++..+ +.+..+++++..+.. +++.+.+++.
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~ 95 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLD 95 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3677889999999999999999999999999999999998877 788899999888773 3344444333
No 217
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.59 E-value=1.5 Score=44.86 Aligned_cols=180 Identities=16% Similarity=0.146 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCC-------CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHH
Q 009182 167 SSHEIRQQADSALWEFLQEIKNSP-------SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL 239 (541)
Q Consensus 167 ~~~eVR~~a~~~L~~ll~~i~~~~-------~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~ll 239 (541)
++.++.+.+...+++++.+-+... ..+-+.....++.....+|+.++..|+.-+..++..++........+++
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 345555555555555554332110 0011124445556778889999999999999888777665543224666
Q ss_pred HHHhhhcCC----CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc-----CC--CCHHHHHHHH--HHHHHH
Q 009182 240 GAILPCISD----KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL-----SS--EWEATRIEAL--HWISTL 306 (541)
Q Consensus 240 p~ll~~l~d----~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L-----~~--~~~~~R~aal--~wL~~L 306 (541)
+.+++.+++ ++.+....|..+++.+++.-..-..-|+ ...++.+...+ .+ .+......++ .|+..+
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 666666665 3345566777777766532100000012 34555555555 11 2233333333 566666
Q ss_pred HhhChHHHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhc
Q 009182 307 LNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAK 349 (541)
Q Consensus 307 ~~~~~~~i~~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~~ 349 (541)
-...-+.+..+. ++|.+.+.+++. .+.|+..++.++..+.+
T Consensus 228 ~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 228 EPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp SHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 555556665443 999999998876 56788888888888884
No 218
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.46 E-value=10 Score=42.38 Aligned_cols=146 Identities=15% Similarity=0.171 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC
Q 009182 195 GRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (541)
Q Consensus 195 ~~ii~~Ll~~~~~~~-~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~ 273 (541)
..+.|.|..-.+.++ -.+....++=+..+.+--+.+- +..+++|.+..++.+.+..+.+.+.+....+.+.+...
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~--~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~-- 423 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEE--VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP-- 423 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHH--HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH--
Confidence 445555555444222 2233333333333333323222 47899999999999999999998888887776654311
Q ss_pred CCChHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 274 GFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 274 ~~~l~~il~~L~~~L-~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
+--..++|.+.... .+.+..+|..++.+++.+.+.+..- .-++. ++.++++.+-++|.++....++.....
T Consensus 424 -~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~--~v~d~-~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 424 -FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA--AVLDE-LLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred -HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH--HhHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 11246788887665 5677889999999999998554322 23344 444567777777888887776665544
No 219
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.45 E-value=18 Score=36.91 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=106.9
Q ss_pred HHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCC
Q 009182 89 VQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS 167 (541)
Q Consensus 89 VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~ 167 (541)
|-.-| +.-+.+++-+..+.=..++..+.|-|+..+....-.||-..+..+....--.+..+.+.++.++-+++--+.|.
T Consensus 71 VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede 150 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDE 150 (307)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccC
Confidence 33334 44444555444332235678889999999998899999999999986554334489999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-----------c-Ccccch
Q 009182 168 SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-----------D-QLVPYY 235 (541)
Q Consensus 168 ~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~-----------~-~l~p~l 235 (541)
+.|+-..+.+.++.+...++.. ..++.+--.++ .++.+|..|+.|+..-..-.. . .+.|--
T Consensus 151 ~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 151 GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 9999999999999998776532 12344444444 467799999999874321111 0 112222
Q ss_pred hhHHHHHhhhcCCCChhHH
Q 009182 236 ADILGAILPCISDKEEKIR 254 (541)
Q Consensus 236 ~~llp~ll~~l~d~~~~iR 254 (541)
.-++.++..++.|++-=|+
T Consensus 224 ~Llv~al~~~L~D~~iLVq 242 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQ 242 (307)
T ss_pred cHHHHHHHHHhCCchHHHH
Confidence 3455677777777654444
No 220
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.39 E-value=6.1 Score=39.60 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=89.7
Q ss_pred HHHHh-chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcC------CCHHH
Q 009182 59 IAKVV-RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV------LNPYV 130 (541)
Q Consensus 59 i~k~~-~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d------~~~~v 130 (541)
++|.. .++...||+.++.++ ++..+.+.|.|| +.| -.+ -.+.+++|.+...+.+ .|-.+
T Consensus 186 lvkHvLsKELq~YF~kvisal---~dEs~~~~r~aAl~sL-------r~d---sGlhQLvPYFi~f~~eqit~Nl~nl~~ 252 (450)
T COG5095 186 LVKHVLSKELQMYFDKVISAL---LDESDEQTRDAALESL-------RND---SGLHQLVPYFIHFFNEQITKNLKNLEK 252 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh-------ccC---ccHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44443 456667888887776 666777888888 442 112 2356667777766653 23333
Q ss_pred HHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHc-----C-CCC----HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 009182 131 RQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML-----S-DSS----HEIRQQADSALWEFLQEIKNSPSVDYGRMAEI 200 (541)
Q Consensus 131 R~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL-----~-D~~----~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~ 200 (541)
-..++.....+.+.+..=.-+|+..++|.++.++ + +++ ..+|..|+..++..++.+++....--+.+...
T Consensus 253 LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrT 332 (450)
T COG5095 253 LTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRT 332 (450)
T ss_pred HHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHH
Confidence 3444455555555554444467777777766443 2 332 24899999999988887763211113566666
Q ss_pred HHHhcCCC--CHHHHHHHHHHHHHH
Q 009182 201 LVQRAASP--DEFTRLTAITWINEF 223 (541)
Q Consensus 201 Ll~~~~~~--~~~vr~~al~wL~~l 223 (541)
+++..-|. -+.....|+..+..+
T Consensus 333 llKafLD~~k~~sT~YGalkgls~l 357 (450)
T COG5095 333 LLKAFLDREKTESTQYGALKGLSIL 357 (450)
T ss_pred HHHHHHhcccccchhhhhhhhhhhh
Confidence 66654332 344566777766644
No 221
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=91.12 E-value=11 Score=43.15 Aligned_cols=251 Identities=16% Similarity=0.164 Sum_probs=138.6
Q ss_pred HhhhHHHHHHHhcC----CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 112 IEEFIPLLRERMNV----LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 112 l~~~iP~L~e~l~d----~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
++++--.|.++.+. +...--.-++++...+......++-.+..+||.-+-++|.+++++++..++.++..|...-+
T Consensus 50 L~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~ 129 (819)
T KOG1877|consen 50 LPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEE 129 (819)
T ss_pred hhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcc
Confidence 44445555555542 22333344667777777777777767778888888899999999999999999999986655
Q ss_pred CCCCC--ChHHHHHHHHHhcCC-CCHH----HH------HHHHHHHHHHHhhcCcCccc-chhhHHHHHhhhcCCCC---
Q 009182 188 NSPSV--DYGRMAEILVQRAAS-PDEF----TR------LTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKE--- 250 (541)
Q Consensus 188 ~~~~~--~~~~ii~~Ll~~~~~-~~~~----vr------~~al~wL~~l~~~~~~~l~p-~l~~llp~ll~~l~d~~--- 250 (541)
+.+.. .++.+++.+-+.+.+ +++. +| +.++.|+.+..++.+..--+ |...++|.++..++.-+
T Consensus 130 d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~ 209 (819)
T KOG1877|consen 130 DGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLG 209 (819)
T ss_pred cCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcc
Confidence 44333 368888888777665 3332 22 33566877666665432222 47788888877766422
Q ss_pred -----hhH---------------HHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc-CCCCHHHH-HHHHH-HHHHHH
Q 009182 251 -----EKI---------------RVVARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATR-IEALH-WISTLL 307 (541)
Q Consensus 251 -----~~i---------------R~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L-~~~~~~~R-~aal~-wL~~L~ 307 (541)
.++ ..-|..+ +.++.+....+.++..++.-+..++ .+.-|..- .=|.. |=..++
T Consensus 210 ~~~S~s~~~~~~~~~a~~~~~~p~vla~~c---l~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~ 286 (819)
T KOG1877|consen 210 KRESDSRIRTFSLLAAGDKTSDPKVLAERC---LRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIY 286 (819)
T ss_pred cccCcccccCccccccCCcccCcchhHHHH---HHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHH
Confidence 111 0112223 3333444444456788887777776 34334332 21222 222233
Q ss_pred hhChHHHhhhhHHHHHHHHHhc-CCCCHHHHH----HHHHHHHHHhcchhhHHHHHHHHHHhcc
Q 009182 308 NRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVL----LVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 308 ~~~~~~i~~~l~~l~p~Ll~~L-~D~~~~V~~----~~~~~L~~i~~~~~~f~~~m~~LL~~~~ 366 (541)
...++....++..++..|...- ..+.++... .+.-+++.. +-.++--.+...++..++
T Consensus 287 ~iq~q~s~~v~~~li~hLd~~~~~~~~~r~~~~iv~~~~~~i~~~-~v~ps~l~i~n~l~rhLR 349 (819)
T KOG1877|consen 287 LIQRQYSYFVIQELINHLDNKKLVAKKPRLGLSIVLVSIALIAAT-SVGPSVLIIFNDLLRHLR 349 (819)
T ss_pred HHhhccchHHHHHHHHHHHhhcccccCccccchhHHHHHHHHHhc-ccchHHHHHHHHHHHHHH
Confidence 2333333334566666665443 444444333 222222222 223344444555555554
No 222
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.94 E-value=20 Score=36.37 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=43.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCH
Q 009182 118 LLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH 169 (541)
Q Consensus 118 ~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~ 169 (541)
-+.+++.+.+|.||+.++..+-.+...+...+..|=-..++.+++++.|..+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc
Confidence 4567888999999999999888777666666777777888999999999876
No 223
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.88 E-value=3.7 Score=47.56 Aligned_cols=111 Identities=23% Similarity=0.223 Sum_probs=74.9
Q ss_pred hhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCC-chhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC-
Q 009182 114 EFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP- 190 (541)
Q Consensus 114 ~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~-~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~- 190 (541)
.+|-...+.++| +.|-.||+++-+++.|=+-.+ ....-.=..-.+.|...|+|+.+|||.+|.-+|+.|+.......
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence 346677888888 579999999999998732211 11111111224567779999999999999999999997532110
Q ss_pred ----------C-----CChHHHHH----HHHHhcCCCCHHHHHHHHHHHHHHH
Q 009182 191 ----------S-----VDYGRMAE----ILVQRAASPDEFTRLTAITWINEFV 224 (541)
Q Consensus 191 ----------~-----~~~~~ii~----~Ll~~~~~~~~~vr~~al~wL~~l~ 224 (541)
. ...+++++ -++...++..+.+|.+....+.+++
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 0 11345555 4666778888999988777777664
No 224
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.54 E-value=0.85 Score=38.89 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 208 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 208 ~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
.+...|..++..++++.+.++..+.++.|+++-.+..++..+ +.|..|.+++..+.+....
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence 456678899999999999999999999999999888888764 8999999999998776654
No 225
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.20 E-value=0.76 Score=43.64 Aligned_cols=93 Identities=13% Similarity=0.238 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCC
Q 009182 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (541)
Q Consensus 193 ~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~ 272 (541)
++...+|.+...+.+.+.-.|..|-.++..+.-.+|+.++|-+|+++..+-.++...+.++...+.++.+.+..+.+-.+
T Consensus 111 dy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 111 DYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred cchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc
Confidence 57888999998888888778888888999999999999999999999999999999999998888888877765544223
Q ss_pred CCC--ChHhHHHHHH
Q 009182 273 DGF--DVGPILSIAT 285 (541)
Q Consensus 273 ~~~--~l~~il~~L~ 285 (541)
.++ -|.+++|++.
T Consensus 191 ~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 191 AALVPFYRQLLPVLN 205 (262)
T ss_pred hhhhhHHHHhhhhhh
Confidence 222 2567777663
No 226
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.10 E-value=0.56 Score=32.23 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 319 ~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
.+.+|.|++.|++++++|+..++|+++.++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999886
No 227
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=90.09 E-value=71 Score=41.42 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=118.2
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHH-hch----hhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHh-hccc
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKV-VRG----DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-VTES 107 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~-~~~----~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi-~~e~ 107 (541)
.......+.+....+|..|+..+.+-+.. .+. ....+++.+-..+..+..|.+.+++.|+.........+ .++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 86 (2341)
T KOG0891|consen 7 LKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTEH 86 (2341)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhccc
Confidence 34455667777777877777666654432 221 22345555666666788888888887763322222111 3444
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHh
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQ-ADSALWEFLQEI 186 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~-a~~~L~~ll~~i 186 (541)
+.+....+-..+.-.+...+..+-..+...++.++.-.+..-..+...-.+.++.++++ ..++|.. |.-....+....
T Consensus 87 ~~~~~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~-~~~~~~~~a~~~~~~l~~~~ 165 (2341)
T KOG0891|consen 87 DRKNISRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGE-RQEYRRLAAVLIIKELADNV 165 (2341)
T ss_pred ccchhHhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhh-hhhhhhHHHHHhhhhHhhcC
Confidence 45556666666767776668888888888888777666555556666667777778832 3344443 333333332221
Q ss_pred cCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 009182 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (541)
Q Consensus 187 ~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~ 227 (541)
+.-..+.+..+...+...+.++++.+|..|+..+.......
T Consensus 166 P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~ 206 (2341)
T KOG0891|consen 166 PTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSL 206 (2341)
T ss_pred cHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhh
Confidence 11011346788888888899999999999888777654433
No 228
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.95 E-value=6.7 Score=41.18 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH-HhhcCCCH--HHHHHH-HHHHHHHhHhhc-cc-----------ch
Q 009182 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADSDA--NVQSAA-HLLDRLVKDIVT-ES-----------DQ 109 (541)
Q Consensus 46 ~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~-kl~~D~d~--~VR~~A-~~L~~l~kdi~~-e~-----------~~ 109 (541)
...|.+|++-+..+++..++...+.+...+..+. +.-++|.. .-|.|| ..+..+.-...+ .. ..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 4567788888888887765544433333233322 22335544 556666 443333211111 00 13
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L 179 (541)
|-...++|-|. --....|-.|.-++.-+..+.+..+. ..+..+++.+.+.|.+++.-|+.-|+.++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 44556677776 22246788999999999999887765 46677888888899999999999887653
No 229
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.80 E-value=5.8 Score=39.78 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=85.0
Q ss_pred hchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCC-----CHHHHHHH-HHHHHHH
Q 009182 151 GFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-----DEFTRLTA-ITWINEF 223 (541)
Q Consensus 151 ~~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~-----~~~vr~~a-l~wL~~l 223 (541)
.|++.+.. .+.| ++.+.|.+|.++|. .+..+++++|+++.+..++ .....++. +.....+
T Consensus 197 ~YF~kvis----al~dEs~~~~r~aAl~sLr---------~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sL 263 (450)
T COG5095 197 MYFDKVIS----ALLDESDEQTRDAALESLR---------NDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSL 263 (450)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhc---------cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444444 4444 56677888855532 1456899999999887643 12223332 2333333
Q ss_pred HhhcCcCcccchhhHHHHHhhhcCC----CC------hhHHHHHHHHHHHHHHhhcCCCCCCCh-HhHHHHHHHhcC--C
Q 009182 224 VKLGGDQLVPYYADILGAILPCISD----KE------EKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLS--S 290 (541)
Q Consensus 224 ~~~~~~~l~p~l~~llp~ll~~l~d----~~------~~iR~~A~~~~~~L~~~i~~~~~~~~l-~~il~~L~~~L~--~ 290 (541)
.+-..--+-||+.+++|.++.|+-- ++ -.+|+.|....+-..+.+.+. +..+ +.+...+.+.+. .
T Consensus 264 L~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~--YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 264 LKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS--YKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred hcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh--hhhhchHHHHHHHHHHHhcc
Confidence 3333333459999999999998742 11 237888887777665544432 0111 344445555543 2
Q ss_pred CCHHHHHHHHHHHHHHHhhCh
Q 009182 291 EWEATRIEALHWISTLLNRHR 311 (541)
Q Consensus 291 ~~~~~R~aal~wL~~L~~~~~ 311 (541)
..+.+...|+..+..+....-
T Consensus 342 k~~sT~YGalkgls~l~ke~i 362 (450)
T COG5095 342 KTESTQYGALKGLSILSKEVI 362 (450)
T ss_pred cccchhhhhhhhhhhhchhhe
Confidence 346688889988887776653
No 230
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=89.51 E-value=30 Score=44.74 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhhcc-hhHHHHhhcCCCCHHHHHHHHHH---HHHHHHHhchhhhhHHHHHHHHHH---
Q 009182 7 FLFEIIVEQFLLYADLFFYSETILQQ-IVPPVLNSFSDQDSRVRYYACEA---LYNIAKVVRGDFIIFFNQIFDALC--- 79 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~-ii~~vl~~l~D~d~~VR~~A~ea---L~~i~k~~~~~~~~~~~~i~~~L~--- 79 (541)
+.-+++..++......-.. .++.. +..+.+.+..+-+..++.++... .+....+++++..+..++....+.
T Consensus 247 ~~~~~~~~~F~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~~~~~e~~~~~~~~~~ 324 (2105)
T COG5032 247 RSLPVIIKKFLNLLLIKVS--YYLPSFFRLSLLSYLDHFETDLFKTFLVTSCFLFFVDEICKPESEHLAEEVSEKLSKFL 324 (2105)
T ss_pred cCChhHHHHHHHHhhhHhe--eeccchhhhhhhHhhcCcchhHHHHHHhhheeeeeeccccCcccccchHHHHHHHHHHH
Confidence 4556777777655444444 33333 33667788888899999988542 121222333333222222222222
Q ss_pred -HhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHH
Q 009182 80 -KLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFL 157 (541)
Q Consensus 80 -kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L 157 (541)
-...|+.+++|..+ ..+..... .......-+..+...+.+.....+..+....+....+.+...++++.+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~fd------~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 398 (2105)
T COG5032 325 TIEIIDSFPEIRISALSSLLVIFD------YHLALPDAVRLLFGESNDKVFLISELALDSTGRLLRVLPARVLPSLFEFL 398 (2105)
T ss_pred hhhcccccHHHHHHHHhccccccC------ccccCHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccHHhhhhHHHHHH
Confidence 34567778888763 11111111 00001111222222222222233333334455566666665555555555
Q ss_pred HHHHHHcCCCCHHH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-cCcccch
Q 009182 158 DGLFNMLSDSSHEI-RQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-DQLVPYY 235 (541)
Q Consensus 158 ~~L~~lL~D~~~eV-R~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~-~~l~p~l 235 (541)
..+...+......+ +......+..+.............+.+.+++..+.|.........+.-++++..+++ ....+|.
T Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 478 (2105)
T COG5032 399 LSLLTVLKISGLILEFEISAQLLCNLIRSSNQLLTSLISPYFLFILPKCIDSSNSEISYRVENLGELKDILGLDRITDYQ 478 (2105)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHHHhhhHHhhhhhcchhHHhhhhHhhccccHHHHHHHHHHHHHHHHhhhhhccHHH
Confidence 54444444442111 122222222222222211122344456677776666665556666777888888877 4455566
Q ss_pred hhHHHHHhhhcCC-CChhHHHHHHHHHHHHHH
Q 009182 236 ADILGAILPCISD-KEEKIRVVARETNEELRA 266 (541)
Q Consensus 236 ~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~ 266 (541)
....+.......+ ..+..|+++.++..++..
T Consensus 479 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 510 (2105)
T COG5032 479 ALSLRLIIVSIQLRSFVFKREAINQIFKQLAS 510 (2105)
T ss_pred HHhhhHhHHHHHHhhccchhhHHHHHHHHHHH
Confidence 6666666666655 345667777777777664
No 231
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=88.97 E-value=52 Score=38.36 Aligned_cols=184 Identities=12% Similarity=0.032 Sum_probs=107.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-----------
Q 009182 158 DGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL----------- 226 (541)
Q Consensus 158 ~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~----------- 226 (541)
+.++..=-|..+.||..|...+..+++..+. -.-.+|+..+++...|+...++..+...+.+--..
T Consensus 475 ~~~~~rClDkaaavR~~al~s~tk~l~l~~~---~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l 551 (1529)
T KOG0413|consen 475 NIVYMRCLDKAAAVRLHALNSLTKILQLQSH---REAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL 551 (1529)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc---cchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence 3344444578899999998888888765542 23456666666665555444443322221110000
Q ss_pred --------------cCcCcccchhhHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC
Q 009182 227 --------------GGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE 291 (541)
Q Consensus 227 --------------~~~~l~p~l~~llp~ll~~l~-d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~ 291 (541)
.+..-..+-..++-.+...+. |+...+|..|.+.......-... .--++.++-+|...++++
T Consensus 552 ~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~---~~~fe~~L~iLq~lCrd~ 628 (1529)
T KOG0413|consen 552 LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE---ASKFEVVLSILQMLCRDR 628 (1529)
T ss_pred CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccch---hhcchhHHHHHHHHhcCc
Confidence 000000122344445555555 44445565555544433221111 112455677888888999
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 292 WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 292 ~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
-...|..++..++.+....|.-+ .....-+-+++..++|....|...+.+.+.+.-
T Consensus 629 ~vsvrk~~~~Sltel~~~~pr~~-~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 629 MVSVRKTGADSLTELMLRDPRLF-SLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred chHHHHHHHHHHHHHHhhCchhh-hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999888877655 344555667777788888888888777665544
No 232
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.62 E-value=7.6 Score=34.98 Aligned_cols=77 Identities=14% Similarity=0.237 Sum_probs=63.1
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
..-+..|..++.+.||+|...++..+..+.+..|..+...+ -+|++.|.+++.+ .+++||..+...+..-...+++.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34477778889999999999999999999999887655433 3678888889998 78999999999988888888743
No 233
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.45 E-value=0.79 Score=31.44 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=27.0
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIA 60 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~ 60 (541)
..+|++++.+.+++.+||..|+-++.|++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999986
No 234
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.45 E-value=1.2 Score=42.27 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=66.9
Q ss_pred hhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-
Q 009182 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL- 226 (541)
Q Consensus 148 ~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~- 226 (541)
++-.|+|.|.+||. +.+..-|-.|.+.+.+++..-+++..+-++++|.-+-..+...|.++...++..|..+...
T Consensus 111 dy~~yLp~F~dGL~----e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 111 DYCPYLPLFFDGLA----ETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred cchHHHHHHhhhhh----hcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 35689999999766 3444445555566666666555554556788888888888888999888887777766544
Q ss_pred --cCcCcccchhhHHHHHh
Q 009182 227 --GGDQLVPYYADILGAIL 243 (541)
Q Consensus 227 --~~~~l~p~l~~llp~ll 243 (541)
-|..++||.-+++|.+=
T Consensus 187 ~~vG~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 187 GCVGAALVPFYRQLLPVLN 205 (262)
T ss_pred cccchhhhhHHHHhhhhhh
Confidence 46899999999999753
No 235
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.41 E-value=17 Score=38.83 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=116.8
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~ 191 (541)
-..|+-.|.+++.+++|.-|..+.+.+..+.. -..+-.+.+|+...+.+.+++.+.. ..
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~-------------------k~~~~r~~Ir~~i~~~~~~fi~e~~--~~ 189 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYG-------------------KFPNLRSFIRKSINNIFYRFIYETE--RH 189 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHH-------------------H-TTTHHHHHHHHHHHHHHHHHTTS----
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-------------------HhhhhHHHHHHHHHHHHHHHhcCcc--cc
Confidence 35788899999999999999988877765432 1222334556666666666665332 12
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHhhc-CcCcccchhhHHHHHhhhcCCCChh-----------------
Q 009182 192 VDYGRMAEILVQRAASPDEFTRLT-AITWINEFVKLG-GDQLVPYYADILGAILPCISDKEEK----------------- 252 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~~~~vr~~-al~wL~~l~~~~-~~~l~p~l~~llp~ll~~l~d~~~~----------------- 252 (541)
..+.+++.++-...+.-..-.+.. -.++...+..+. ...+..|.+++...+...... +|.
T Consensus 190 ~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-dp~l~~~~i~~llk~WP~t~ 268 (409)
T PF01603_consen 190 NGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-DPSLAEPVIKGLLKHWPKTN 268 (409)
T ss_dssp STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHhCCCCC
Confidence 346666666666554311111111 112223333332 233334455555554444322 222
Q ss_pred --HHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHH--HHHhhChHHHhhhhHHHHHHHHHh
Q 009182 253 --IRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIS--TLLNRHRTEVLHFLNDIFDTLLKA 328 (541)
Q Consensus 253 --iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~--~L~~~~~~~i~~~l~~l~p~Ll~~ 328 (541)
......+-.+.++..+......--...+...+.+.+.+++..+-+.|+..+. .+. .-+..+.+.++|.+...
T Consensus 269 s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~----~li~~~~~~i~p~i~~~ 344 (409)
T PF01603_consen 269 SQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL----SLISQNSRVILPIIFPA 344 (409)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH----HHHHCTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH----HHHHhChHHHHHHHHHH
Confidence 1111111122222111100000002345667777788999999998886432 111 11233445566666666
Q ss_pred cCC----C-CHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHh
Q 009182 329 LSD----P-SDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHN 364 (541)
Q Consensus 329 L~D----~-~~~V~~~~~~~L~~i~~-~~~~f~~~m~~LL~~ 364 (541)
|.. - +..||..+..++..+.+ +.+-|++......+.
T Consensus 345 L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~ 386 (409)
T PF01603_consen 345 LYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEK 386 (409)
T ss_dssp HSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 543 2 67899999999999885 566677755554433
No 236
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.10 E-value=54 Score=37.41 Aligned_cols=298 Identities=19% Similarity=0.199 Sum_probs=154.6
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchh---hhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHh---
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD---FIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI--- 103 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~---~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi--- 103 (541)
+..+..++..+...|-.||.||.+-+.++.+.-+.+ .+..+|.-+..+..++.|...-+|+.| -.|..+.++.
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence 345677888889999999999999988887654322 233345566667778899999999998 5454443321
Q ss_pred ----------------hcccc---------------------------hhcHhhhHHHHHHHhc-----CC-----CHHH
Q 009182 104 ----------------VTESD---------------------------QFSIEEFIPLLRERMN-----VL-----NPYV 130 (541)
Q Consensus 104 ----------------~~e~~---------------------------~~~l~~~iP~L~e~l~-----d~-----~~~v 130 (541)
+.+.| -|-=..+||.|...+. |. +++-
T Consensus 201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr 280 (970)
T KOG0946|consen 201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR 280 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence 11111 1344667777775543 21 1111
Q ss_pred HHHHHHHH---HHhhcCCCch-h------hhchHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhcCC-------CC
Q 009182 131 RQFLVGWI---TVLDSVPDID-M------LGFLPDFLDGLFNMLSD--SSHEIRQQADSALWEFLQEIKNS-------PS 191 (541)
Q Consensus 131 R~~a~~~l---~~L~~~~~~~-l------~~~lp~~L~~L~~lL~D--~~~eVR~~a~~~L~~ll~~i~~~-------~~ 191 (541)
-+.+...+ ..+.+..... . .-.=..++..|+..+.. ...+|+..+...+...++.-... ..
T Consensus 281 v~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~ 360 (970)
T KOG0946|consen 281 VQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTA 360 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccC
Confidence 22222233 3332221111 1 11223456677766543 46788888877777766543211 11
Q ss_pred CC----hHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCCh-hHHHHHH-------
Q 009182 192 VD----YGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE-KIRVVAR------- 258 (541)
Q Consensus 192 ~~----~~~ii~~Ll~~~~~~~~-~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~-~iR~~A~------- 258 (541)
++ .+.|+-.+.....+..+ ..|-++.+.+..+..-....-..|+.+++|. -.++.. .+..-..
T Consensus 361 p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~----~~nst~Nsl~ag~l~~~~l~s 436 (970)
T KOG0946|consen 361 PSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPS----STNSTSNSLSAGQLLLVGLSS 436 (970)
T ss_pred CCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhh----hccccccchhhhhHHHHhhcc
Confidence 22 23344444444444444 4466666666554322222222344444443 222211 1110000
Q ss_pred -----------------HHH----HHHHHhhcCCCCCCChHhHHHHHH---HhcCCCCHHHHHHHHHHHHHHHhhChHHH
Q 009182 259 -----------------ETN----EELRAIKADPADGFDVGPILSIAT---RQLSSEWEATRIEALHWISTLLNRHRTEV 314 (541)
Q Consensus 259 -----------------~~~----~~L~~~i~~~~~~~~l~~il~~L~---~~L~~~~~~~R~aal~wL~~L~~~~~~~i 314 (541)
.-| ..|.+.-.....+-+-..++.... ......-..+|..-|..|+....+||+.+
T Consensus 437 ~d~~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~~~~~t~r~qt~vglLmlL~~WL~~cp~AV 516 (970)
T KOG0946|consen 437 TDSLDNWFTAVILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNLKLQGTSRHQTRVGLLMLLITWLYGCPDAV 516 (970)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCcHHH
Confidence 000 011111111111122233444322 22233446688888999999999999998
Q ss_pred hhhhH--HHHHHHHHhcCCC
Q 009182 315 LHFLN--DIFDTLLKALSDP 332 (541)
Q Consensus 315 ~~~l~--~l~p~Ll~~L~D~ 332 (541)
..++. ..++++...+.|.
T Consensus 517 ~dFLs~~s~iq~Ltt~l~~n 536 (970)
T KOG0946|consen 517 KDFLSESSIIQYLTTQLMDN 536 (970)
T ss_pred HHHHccccHHHHHHHHHhhc
Confidence 87754 4788888877766
No 237
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=88.05 E-value=2.7 Score=34.80 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCH--HHHHHH-HHHHHHHh
Q 009182 42 SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA--NVQSAA-HLLDRLVK 101 (541)
Q Consensus 42 ~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~--~VR~~A-~~L~~l~k 101 (541)
.|.+|.+|.+|+..+..|++..+...-.--+.+...+.+.+.||+. ...-|| ..|..+-.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4779999999999999999887644333346889999999988765 567788 66666544
No 238
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.94 E-value=83 Score=39.43 Aligned_cols=222 Identities=14% Similarity=0.074 Sum_probs=144.7
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhcCCCC-CChHHHHHH
Q 009182 123 MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEI-RQQADSALWEFLQEIKNSPS-VDYGRMAEI 200 (541)
Q Consensus 123 l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eV-R~~a~~~L~~ll~~i~~~~~-~~~~~ii~~ 200 (541)
+..++|..|-.+...+.+++...+. .+++-...+..|+-+.+..+.+ |..-.-+++.+.+-.+...+ .++..=+.+
T Consensus 885 l~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 885 LINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 3458899999999999999886553 2556677788888888876666 55555667767666654322 235555557
Q ss_pred HHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC---ChhHHHHHHHHHH------HHHHhhcC
Q 009182 201 LVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK---EEKIRVVARETNE------ELRAIKAD 270 (541)
Q Consensus 201 Ll~~~~~~~~-~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~---~~~iR~~A~~~~~------~L~~~i~~ 270 (541)
++...+|++. .|+.-++..+.....-++....-|...-+..+++.+-.. +-++++.-.+++. .+.+.++.
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence 7877777754 889888888887777667666777777777777766432 2334333223322 23222222
Q ss_pred ----CCCC---CChH-hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 009182 271 ----PADG---FDVG-PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (541)
Q Consensus 271 ----~~~~---~~l~-~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~ 342 (541)
++.. .-+. ..+-...-.+.+++..+..+++.++.+++--.|... ..+.+++.+-..++-+---.|..+..
T Consensus 1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~--n~~~lV~~L~~~l~s~~~i~r~~~~~ 1120 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV--NLDSLVLQLCSLLSSSYLILRRASFS 1120 (2067)
T ss_pred ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc--cHHHHHHHHHHHhcchhhhhhhhHHh
Confidence 1110 0122 223333344466788889999999999999998855 68899999988888766555666666
Q ss_pred HHHHHh
Q 009182 343 VHACIA 348 (541)
Q Consensus 343 ~L~~i~ 348 (541)
.+.++.
T Consensus 1121 clrql~ 1126 (2067)
T KOG1822|consen 1121 CLRQLV 1126 (2067)
T ss_pred hhhHHh
Confidence 666655
No 239
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.16 E-value=50 Score=36.07 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC
Q 009182 169 HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD 248 (541)
Q Consensus 169 ~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d 248 (541)
.+-|..+...+.+..-.+|.. ..+..+.-.+.+ ..+.|+.-.++++-+..+++-.+..--+-+|+++..+.+. -.
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs~--e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl-p~ 440 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGSD--ECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL-PE 440 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-cc
Confidence 355666666666666666521 112222222222 4568999999999998887655444334456666665543 23
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHH
Q 009182 249 KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDT 324 (541)
Q Consensus 249 ~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~ 324 (541)
+.+ +|.++....|.+.+-+...+. -++.++..+...+.... --.++..|+..+..+|...+.++.+++...
T Consensus 441 Q~~-~~~ts~ll~g~~~ew~~~~p~--~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l 511 (559)
T KOG2081|consen 441 QAP-LRYTSILLLGEYSEWVEQHPE--LLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLEL 511 (559)
T ss_pred chh-HHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 344 888888888888777665321 13445555555554333 455677899999999999988877776553
No 240
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=87.01 E-value=32 Score=41.85 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----cchhhHHH--HHHHHHHhccccchhhhhhHHHHHHHhh
Q 009182 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLC 384 (541)
Q Consensus 319 ~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~----~~~~~f~~--~m~~LL~~~~~~~~ll~~r~~~iir~Lc 384 (541)
...+..||+.|+..+--|+.++|-+|-.++ .+++++-+ -+.-|..++++.++....-....+|+|=
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 356778899999999899999999888888 34555544 4555666676665554444455666663
No 241
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.97 E-value=0.96 Score=31.54 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.0
Q ss_pred HHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009182 302 WISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (541)
Q Consensus 302 wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L 344 (541)
.++.+.+..|.-+. .+.+...+.+.|.|+++.||..+++++
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45666666666553 458889999999999999999998764
No 242
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.95 E-value=22 Score=38.74 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=103.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHHhhcC
Q 009182 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE--------FTRLTAITWINEFVKLGG 228 (541)
Q Consensus 157 L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~--------~vr~~al~wL~~l~~~~~ 228 (541)
+..+.+.+.+.++.-|.+|... +- .+..++.++|+++..+.+.-. +.-.+.+.-...+.+-..
T Consensus 209 y~~It~a~~g~~~~~r~eAL~s---L~------TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQS---LE------TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHh---hc------cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 3444446666888888887444 32 245689999999988765411 111122333333444445
Q ss_pred cCcccchhhHHHHHhhhcCCC----------ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC--CCHHHH
Q 009182 229 DQLVPYYADILGAILPCISDK----------EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATR 296 (541)
Q Consensus 229 ~~l~p~l~~llp~ll~~l~d~----------~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~--~~~~~R 296 (541)
-.+-||+-+++|.++.|+... +-.+|+-|.+....+++-+.+..++ =..-+...+.+.+.+ ..+.+.
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~ 358 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTH 358 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhh
Confidence 567799999999999998743 2348998888888776655432111 024566777777755 467789
Q ss_pred HHHHHHHHHHHhhChHHH-hhhhHHHHHHHHHhcCC
Q 009182 297 IEALHWISTLLNRHRTEV-LHFLNDIFDTLLKALSD 331 (541)
Q Consensus 297 ~aal~wL~~L~~~~~~~i-~~~l~~l~p~Ll~~L~D 331 (541)
..|+..|.++....-..+ .|.++.+..-+-+.+.+
T Consensus 359 YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~ 394 (576)
T KOG2549|consen 359 YGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDV 394 (576)
T ss_pred hhHHHHHHHhhhhhhhheeccchHHHHHHhhhhccc
Confidence 999998888887654443 45555555544444443
No 243
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=67 Score=37.07 Aligned_cols=167 Identities=10% Similarity=0.119 Sum_probs=105.1
Q ss_pred HHHHhhcCCCC-----HHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHh-hcCCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 35 PPVLNSFSDQD-----SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-SADSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 35 ~~vl~~l~D~d-----~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl-~~D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
..+-+.+.|.+ +.+-.+.+-.+..++...+++-.++++.+|...... ++-+.+..-+.+ ..++..+.-...
T Consensus 465 ~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e-- 542 (982)
T KOG2022|consen 465 DTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE-- 542 (982)
T ss_pred HHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc--
Confidence 44444554444 444444444566677666665556655555554431 233333333333 556665553333
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHH
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD--SSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D--~~~eVR~~a~~~L~~ll~~ 185 (541)
..+.++..+|.|++.++ +++.-.-+++.+..++.-.+.++.+|...|+...-..+.- ..+.+|....+++|.++..
T Consensus 543 ~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 543 HPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred CCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 34668888999999986 5677777788899999999888999999888877666644 3467788888999988876
Q ss_pred hcCCCC-CChHHHHHHHHHhc
Q 009182 186 IKNSPS-VDYGRMAEILVQRA 205 (541)
Q Consensus 186 i~~~~~-~~~~~ii~~Ll~~~ 205 (541)
++-... .++..+++-++...
T Consensus 621 ~~pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 621 LKPEEIPKYLMKLINPILSQL 641 (982)
T ss_pred ccHHhHHHHHHHHHHHHHHHH
Confidence 651111 13556666655543
No 244
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=65 Score=36.81 Aligned_cols=348 Identities=15% Similarity=0.149 Sum_probs=182.7
Q ss_pred chhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh-hhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHH---
Q 009182 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAA-HLLDRL--- 99 (541)
Q Consensus 25 ~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~-~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l--- 99 (541)
..+++.+.++..+-.+= =..=|+.|+.++..+++..|.++ ...++.++..|-+=-.|++ .-+.| +.+.-+
T Consensus 19 s~aETI~kLcDRvessT---L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E--~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESST---LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPE--IIKYALDTLLILTSH 93 (970)
T ss_pred cHHhHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHH--HHHHHHHHHHHHHhc
Confidence 34556666666554421 12337888889888887766433 2233444444433333332 12222 221111
Q ss_pred -------------------HhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch---hhhchHHHH
Q 009182 100 -------------------VKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID---MLGFLPDFL 157 (541)
Q Consensus 100 -------------------~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~---l~~~lp~~L 157 (541)
+-+.... -..+|..+...+...|.+||.++++.+..+.+..|.+ .+-..|.-.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik-----~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gI 168 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIK-----NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGI 168 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHc-----CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhH
Confidence 1111111 1234788888888899999999999999998887755 456778888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHhhc--CcC
Q 009182 158 DGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASP----DEFTRLTAITWINEFVKLG--GDQ 230 (541)
Q Consensus 158 ~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~-~~~~~~ii~~Ll~~~~~~----~~~vr~~al~wL~~l~~~~--~~~ 230 (541)
..+..+|.|+..-||..+.-.|..+.+.-.... -+.++++...|...+... .--|..-|+..+..+.+-. .+.
T Consensus 169 S~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~ 248 (970)
T KOG0946|consen 169 SKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQN 248 (970)
T ss_pred HHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhh
Confidence 888899999999999999888887775332100 012445555555544322 2356777888887776542 222
Q ss_pred cc---cchhhHHHHHhhhcCCCChhH------HHHHHHHHHHHHHhhcCCCC----------CCChHhHHHHHHHhcCCC
Q 009182 231 LV---PYYADILGAILPCISDKEEKI------RVVARETNEELRAIKADPAD----------GFDVGPILSIATRQLSSE 291 (541)
Q Consensus 231 l~---p~l~~llp~ll~~l~d~~~~i------R~~A~~~~~~L~~~i~~~~~----------~~~l~~il~~L~~~L~~~ 291 (541)
+. .|+|++...+- .....+.++ |-+...+.=++.+..-..++ ..+-..++.+|...+.++
T Consensus 249 ~FrE~~~i~rL~klL~-~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 249 FFREGSYIPRLLKLLS-VFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred HHhccccHHHHHhhcC-cccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 21 35555543222 111222111 21111111111121111111 112235778888888776
Q ss_pred CHH--HHHHHHHHHHHHHhhChHH-------HhhhhHH----HHHHHHHhcCCCC-HHHHHHHHHHHHHHh-cchhhHHH
Q 009182 292 WEA--TRIEALHWISTLLNRHRTE-------VLHFLND----IFDTLLKALSDPS-DEVVLLVLEVHACIA-KDLQHFRQ 356 (541)
Q Consensus 292 ~~~--~R~aal~wL~~L~~~~~~~-------i~~~l~~----l~p~Ll~~L~D~~-~~V~~~~~~~L~~i~-~~~~~f~~ 356 (541)
..+ ++-.++........++... ..|+.+. ++--++...+... ...|..+..++..+. .++.-=.+
T Consensus 328 ~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~ 407 (970)
T KOG0946|consen 328 GVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK 407 (970)
T ss_pred CCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH
Confidence 433 5555555555555555322 2333332 2333333334433 355666767766665 33333356
Q ss_pred HHHHHHHhccccchhhhhhHHHHHHHh
Q 009182 357 LVVFLVHNFRVDNSLLEKRGALIIRRL 383 (541)
Q Consensus 357 ~m~~LL~~~~~~~~ll~~r~~~iir~L 383 (541)
|+..++....+.-..--..|.++.-.|
T Consensus 408 ~l~tllp~~~nst~Nsl~ag~l~~~~l 434 (970)
T KOG0946|consen 408 FLKTLLPSSTNSTSNSLSAGQLLLVGL 434 (970)
T ss_pred HHHHHhhhhccccccchhhhhHHHHhh
Confidence 888887766443221113445544433
No 245
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.43 E-value=13 Score=33.45 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=61.9
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhcC-CCHHHHHHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSAD-SDANVQSAA 93 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~D-~d~~VR~~A 93 (541)
+.+.|.+...+..-.+.+..+.+-++++++.|-..|...+..++++|+..+-..+ .+..+.|.+++++ .++.||+-.
T Consensus 22 l~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~ki 101 (144)
T cd03568 22 LDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKL 101 (144)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHH
Confidence 4556666665555667778888888999999999999999999999986442111 3567778888888 788898877
Q ss_pred -HHHHHHH
Q 009182 94 -HLLDRLV 100 (541)
Q Consensus 94 -~~L~~l~ 100 (541)
..+..-.
T Consensus 102 l~li~~W~ 109 (144)
T cd03568 102 REVVKQWA 109 (144)
T ss_pred HHHHHHHH
Confidence 5544433
No 246
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.02 E-value=19 Score=31.78 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=61.6
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchH--HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp--~~L~~L~~lL~D---~~~eVR~~a~~~L~~ll~~i~ 187 (541)
..-+..|..++.+.||.+...++..+..+.+..|..+...+. +|+..+.+++.+ ++++||..+...+...-..++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 444777888999999999999999999999988876644333 577778888876 478999999999988888876
Q ss_pred C
Q 009182 188 N 188 (541)
Q Consensus 188 ~ 188 (541)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 247
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=85.91 E-value=2.1 Score=36.45 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 209 ~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
...-|..++..|+++.+++|..+..+.|++.-.+..++. .++.|..|.+++..+.+....
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH
Confidence 345688899999999999998888899999988888886 567999999999988766553
No 248
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=85.45 E-value=56 Score=35.00 Aligned_cols=144 Identities=16% Similarity=0.092 Sum_probs=78.3
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhChHHHhhhhHHHH
Q 009182 244 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (541)
Q Consensus 244 ~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~-~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~ 322 (541)
+.+...+.-|...|......+...-.........+.+++.+...+.+. +......|+.++..+....+-...=.-.+.+
T Consensus 108 ~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v 187 (429)
T cd00256 108 NLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGV 187 (429)
T ss_pred HHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCH
Confidence 344455666777777766666421111111123344666777777653 3556777778888877765433211112256
Q ss_pred HHHHHhcCCCC---HHHHH--HHHHHHHHHhcchhhH--HHHHHHHHHhccccchhhhhhHHH-HHHHhhccC
Q 009182 323 DTLLKALSDPS---DEVVL--LVLEVHACIAKDLQHF--RQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLL 387 (541)
Q Consensus 323 p~Ll~~L~D~~---~~V~~--~~~~~L~~i~~~~~~f--~~~m~~LL~~~~~~~~ll~~r~~~-iir~Lc~~l 387 (541)
+.|.+.|+... ...-. -++|+|+.-......+ ..+++.+.+.++...+---.|..+ ++|+|...-
T Consensus 188 ~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 188 PTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 66666665433 11111 3457665433322222 358888888887664433345555 888887753
No 249
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.37 E-value=30 Score=42.01 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=101.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc-hhcH
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-QFSI 112 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~-~~~l 112 (541)
..+.++..|++.+||...-..++++...++..+.+|...++|...-...|++..|-.+| ... ++...+.. ....
T Consensus 86 ~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf----~~~f~~ek~~~v~ 161 (1312)
T KOG0803|consen 86 VIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASF----KDGFAEEKDRHVW 161 (1312)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHHHH----HhhcChhhhHHHH
Confidence 44567889999999999999999999999999999999999999999999999998888 432 22222110 0001
Q ss_pred ----hhhHHHHHHHh-------------------cCCCHHHHHHHHHHHHHhhcCCCch--hh---hchHHH--HHHHHH
Q 009182 113 ----EEFIPLLRERM-------------------NVLNPYVRQFLVGWITVLDSVPDID--ML---GFLPDF--LDGLFN 162 (541)
Q Consensus 113 ----~~~iP~L~e~l-------------------~d~~~~vR~~a~~~l~~L~~~~~~~--l~---~~lp~~--L~~L~~ 162 (541)
+.+.+.+.+.+ ....+++-...+-.+..+-...+.+ +. .-.-.+ -+...+
T Consensus 162 ~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk 241 (1312)
T KOG0803|consen 162 FKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWK 241 (1312)
T ss_pred HHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHH
Confidence 11122222211 1111122222222222222222211 11 112222 234557
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCC-CCCChHHHHHHHHHhcCCCC
Q 009182 163 MLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPD 209 (541)
Q Consensus 163 lL~D~~~eVR~~a~~~L~~ll~~i~~~-~~~~~~~ii~~Ll~~~~~~~ 209 (541)
++.+.++.+|.+.-+++-.+++.+... ...+...+-+..+....+.+
T Consensus 242 ~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 242 LLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred HhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc
Confidence 899999999999999888888777643 11233455566666555555
No 250
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=85.20 E-value=64 Score=35.41 Aligned_cols=312 Identities=18% Similarity=0.183 Sum_probs=168.4
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch--hhhhHHHHHHHHHHHhhcCCC--HHHHHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSD--ANVQSA 92 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~--~~~~~~~~i~~~L~kl~~D~d--~~VR~~ 92 (541)
+.+||-..+.++.++..++|++.-+..++..||....+.+.++-+.+++ .+. -=++.|.+...+++ +.||+=
T Consensus 8 lalAdtD~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~----LPv~~Ll~q~~~~~~s~~vrnf 83 (501)
T PF13001_consen 8 LALADTDEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQ----LPVEALLKQYKEPSDSSFVRNF 83 (501)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCc----CcHHHHHHHHhCCCCchHHHHH
Confidence 4678888888999999999999999999999999999999998887754 221 11344555555555 555554
Q ss_pred H-HHH----------------HHHHhHhhcccc--hhc---HhhhHHHHHHHhcC--------------------CCHHH
Q 009182 93 A-HLL----------------DRLVKDIVTESD--QFS---IEEFIPLLRERMNV--------------------LNPYV 130 (541)
Q Consensus 93 A-~~L----------------~~l~kdi~~e~~--~~~---l~~~iP~L~e~l~d--------------------~~~~v 130 (541)
+ --+ ..+++.+-..+. ... .......+.+...+ .++..
T Consensus 84 sliyi~~g~~Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (501)
T PF13001_consen 84 SLIYIEMGFDRLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCD 163 (501)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHH
Confidence 4 211 112222221000 000 00111111111111 11223
Q ss_pred HHHHHHHHHHhhc--------CCCc-----hhhh------------------chHHH------------------HHHHH
Q 009182 131 RQFLVGWITVLDS--------VPDI-----DMLG------------------FLPDF------------------LDGLF 161 (541)
Q Consensus 131 R~~a~~~l~~L~~--------~~~~-----~l~~------------------~lp~~------------------L~~L~ 161 (541)
..++..|.+.+.. .++. .+.. .+.+. +..+.
T Consensus 164 ~~~l~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~l 243 (501)
T PF13001_consen 164 DVFLAPWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLL 243 (501)
T ss_pred HHHcchhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhhee
Confidence 3444445444311 1110 0000 00011 11111
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 162 NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-----------SPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 162 ~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~-----------~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
-..+|++.+|-..|...|.++... .+=+.++..|..... -.++.+|...+..+..=.. +.
T Consensus 244 iAsad~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-Aa-- 314 (501)
T PF13001_consen 244 IASADSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-AA-- 314 (501)
T ss_pred eEEeCCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-HH--
Confidence 233566777777776665554321 223445554444332 1256777777766653211 11
Q ss_pred cccchhhHHHHHhhhcCCC--ChhHHHHHHHHH---HHHHHhhcCCCCCCChHhHHHHHHHhc------------CCCCH
Q 009182 231 LVPYYADILGAILPCISDK--EEKIRVVARETN---EELRAIKADPADGFDVGPILSIATRQL------------SSEWE 293 (541)
Q Consensus 231 l~p~l~~llp~ll~~l~d~--~~~iR~~A~~~~---~~L~~~i~~~~~~~~l~~il~~L~~~L------------~~~~~ 293 (541)
...|.++.++..++..+ +..+|..+.+-. ....+.+.. --+..+-+.+..++ ..++.
T Consensus 315 --~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~----~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~ 388 (501)
T PF13001_consen 315 --TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISP----QILKLLRPVILSQGWPLIQDSSSQSNSSEDI 388 (501)
T ss_pred --hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCH----HHHHHHHHHHHhcCccccccccccCCCcccH
Confidence 14688888888888876 455555544433 211111110 00122223332222 12456
Q ss_pred HHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 294 ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 294 ~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
..|..+...+|.|+.+.|.-+..- -.++..+...|.++.+++|...-++|+.+.
T Consensus 389 ~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 389 ELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred HHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 789999999999999999876322 456777777888999999998888888877
No 251
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=85.18 E-value=26 Score=33.33 Aligned_cols=160 Identities=14% Similarity=0.192 Sum_probs=82.9
Q ss_pred HHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHH
Q 009182 56 LYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFL 134 (541)
Q Consensus 56 L~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a 134 (541)
+..+...++....+.+..++..+.++-++++.+.|+.+ ..+...++.+..+ .+=.++|.=.+. .+....-|.++
T Consensus 24 ~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe----~vL~~lPLnl~~-~~~~~~~raWL 98 (198)
T PF08161_consen 24 LSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE----QVLSILPLNLDN-ADDSQPGRAWL 98 (198)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH----HHHHHCCCCccC-CCcCCcccchh
Confidence 33344444555567788999999999999998899988 7777777755443 122333322222 22334556666
Q ss_pred HHHHHHhhcCCCchhhhchHHHHHHHH---HHcCC---CC--HHHH--HHHHHHHHHHHHHhcCCCC---CChHHHHHHH
Q 009182 135 VGWITVLDSVPDIDMLGFLPDFLDGLF---NMLSD---SS--HEIR--QQADSALWEFLQEIKNSPS---VDYGRMAEIL 201 (541)
Q Consensus 135 ~~~l~~L~~~~~~~l~~~lp~~L~~L~---~lL~D---~~--~eVR--~~a~~~L~~ll~~i~~~~~---~~~~~ii~~L 201 (541)
+-.+..- +.+.++..|...|+|-.- +...+ .. .+.| +.....+=.++..+...+. ..++.+-+.+
T Consensus 99 LPlLr~~--i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~L 176 (198)
T PF08161_consen 99 LPLLRDH--IRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKLL 176 (198)
T ss_pred HHHHHHh--ccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHHH
Confidence 5555532 334455455555544222 11111 11 1112 1111223233333333221 0145556666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHH
Q 009182 202 VQRAASPDEFTRLTAITWINEF 223 (541)
Q Consensus 202 l~~~~~~~~~vr~~al~wL~~l 223 (541)
.+.+.+ +++.|...+..+..+
T Consensus 177 ~~~L~~-~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 177 GNALYD-QPDLRPIICQALRRL 197 (198)
T ss_pred HHHHhc-CcchHHHHHHHHHHH
Confidence 666654 467787777776654
No 252
>PF05536 Neurochondrin: Neurochondrin
Probab=85.17 E-value=67 Score=35.64 Aligned_cols=325 Identities=21% Similarity=0.187 Sum_probs=185.9
Q ss_pred HHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhc-
Q 009182 154 PDFLDGLFNMLSD----SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLG- 227 (541)
Q Consensus 154 p~~L~~L~~lL~D----~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~-~vr~~al~wL~~l~~~~- 227 (541)
+.|++.|++--.- +..+-+..+...|..|+..=.-..++++-.-||.+++.+.+.+. ++-..|+.-+..++...
T Consensus 52 ~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~ 131 (543)
T PF05536_consen 52 FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE 131 (543)
T ss_pred hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH
Confidence 3666666644332 22445777777777776411111245688899999999877766 77777777777666332
Q ss_pred -CcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCC---CCCChHhHHHHHHHhcCCCCHHHHHHHHHHH
Q 009182 228 -GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA---DGFDVGPILSIATRQLSSEWEATRIEALHWI 303 (541)
Q Consensus 228 -~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~---~~~~l~~il~~L~~~L~~~~~~~R~aal~wL 303 (541)
...+. -..-+|.+...+.. .+...+.|.+.+..++...+... ....+..+++.+.+.+...+...|...+..+
T Consensus 132 G~~aLl--~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L 208 (543)
T PF05536_consen 132 GAKALL--ESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFL 208 (543)
T ss_pred hHHHHH--hcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 12222 12455555555544 45556777777777654433111 1123457888888888877788899999999
Q ss_pred HHHHhhChHH--H----hhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhc---------ch-----hhHHHHHH---
Q 009182 304 STLLNRHRTE--V----LHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAK---------DL-----QHFRQLVV--- 359 (541)
Q Consensus 304 ~~L~~~~~~~--i----~~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~~---------~~-----~~f~~~m~--- 359 (541)
..+...+|.. - ....+.+...+-..|... .+.-|..++.+.+.+.+ ++ +||--+++
T Consensus 209 ~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~ 288 (543)
T PF05536_consen 209 SAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLAC 288 (543)
T ss_pred HHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHH
Confidence 9998888421 1 124556666777777654 67778888877666541 12 34433222
Q ss_pred --------HHHHhcccc-----chhhhh---hHHHHHHHhhccCC-------h---hhHHHHHHHHhcc-----------
Q 009182 360 --------FLVHNFRVD-----NSLLEK---RGALIIRRLCVLLD-------A---ERVYRELSTILEG----------- 402 (541)
Q Consensus 360 --------~LL~~~~~~-----~~ll~~---r~~~iir~Lc~~l~-------~---e~i~~~l~~il~~----------- 402 (541)
.|+...+.. .+++-. -.+.+|..++.... + .++++.+.+.+..
T Consensus 289 VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~ 368 (543)
T PF05536_consen 289 VEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDE 368 (543)
T ss_pred HHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 211111111 000000 01225666666332 2 3666666665542
Q ss_pred -cCChHHHHHHHHHhHHhhcCcHhHHHHHHHHhhccCCcchhHHHHHHHHhhccC-------hHHHHH-----HHHHHhh
Q 009182 403 -EADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHS-------PMAIIS-----LCLLAQT 469 (541)
Q Consensus 403 -~~d~~f~~~~v~~L~~il~t~~el~~~R~~L~~~~~~~~~~~lf~~l~~~w~~n-------~~~~~s-----lcll~~~ 469 (541)
.+|-.|+-..|++|..-| +.|-..+|+.... ..++|.++|+.-..+ |.=.+. ||=++ .
T Consensus 369 ~~~d~~~vlAsvR~L~~WL--aEe~~~lr~~v~~------Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt-~ 439 (543)
T PF05536_consen 369 SQKDPDFVLASVRVLGAWL--AEETSALRKEVYG------LLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLT-A 439 (543)
T ss_pred cccchHHHHHHHHHHHHHH--HhChHHHHHHHHH------HHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhh-c
Confidence 123347777899998887 4555558888877 788888888666555 333332 22222 3
Q ss_pred hHHHHHHHHHhhccccchHHH
Q 009182 470 YHHASAVIQSLVEEDLNVKFL 490 (541)
Q Consensus 470 y~~a~~ll~~~~~~~~~~~~l 490 (541)
=+..++++-..+...+-.+.+
T Consensus 440 e~~gr~~l~~~~g~~~l~~~l 460 (543)
T PF05536_consen 440 EEEGRKILLSNGGWKLLCDDL 460 (543)
T ss_pred cHHHHHHHHhCCcHHHHHHHH
Confidence 445555555555444444433
No 253
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.54 E-value=5 Score=32.70 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=53.8
Q ss_pred hhhcchhHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009182 28 TILQQIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA 93 (541)
Q Consensus 28 ~~l~~ii~~vl~~l-~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A 93 (541)
++-..++.|....+ ..++..||....+++.++....+..+-.-|+.+|..+....+|.+.++-.-|
T Consensus 13 ~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~a 79 (86)
T PF09324_consen 13 NFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLA 79 (86)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHH
Confidence 35556777766654 4568999999999999999888878888899999999999988887776666
No 254
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.51 E-value=7.9 Score=39.08 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=68.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHh-hcccchhcHhh
Q 009182 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-VTESDQFSIEE 114 (541)
Q Consensus 36 ~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi-~~e~~~~~l~~ 114 (541)
.+...+.|+++.||.+|.+.+..+..........+=...++.+.++..|+++ .+.||.++.++..+- +. ..-++.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~---~~ll~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELR---KKLLQD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHH---HHHHHH
Confidence 4567788999999999988877655331112233435678889999999988 677776665544321 11 123344
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC
Q 009182 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPD 146 (541)
Q Consensus 115 ~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~ 146 (541)
|+..++..+.++.+..-..++..+.++++..+
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccCch
Confidence 77788888888644444555556666655543
No 255
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=84.12 E-value=68 Score=34.81 Aligned_cols=284 Identities=14% Similarity=0.050 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCC-CHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHH
Q 009182 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRE 121 (541)
Q Consensus 44 ~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~-d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e 121 (541)
..-..|..|++.+....+..+- ...++++.....++... ..++|.+| +.|.++++.--.. ....=-.++.
T Consensus 2 ~~l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-----~~~~R~~fF~ 73 (464)
T PF11864_consen 2 QPLSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-----SGLMRAEFFR 73 (464)
T ss_pred CCHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-----cHHHHHHHHH
Confidence 3345677788777776655532 33456777777777555 45799999 7777766521110 1111222333
Q ss_pred HhcC-CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHH---HH---------------------HHH
Q 009182 122 RMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEI---RQ---------------------QAD 176 (541)
Q Consensus 122 ~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eV---R~---------------------~a~ 176 (541)
.+.+ .+++.=-.-++++..|.+ .|.++..+-.++.+-|.+++.+.-..+ |. ...
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~-~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTD-NGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHc-CCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 3332 233222233444444433 333444444455555554443221111 11 111
Q ss_pred HHHHHHHHHhcCCCC----CChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCCh
Q 009182 177 SALWEFLQEIKNSPS----VDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE 251 (541)
Q Consensus 177 ~~L~~ll~~i~~~~~----~~~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~ 251 (541)
..+.-+..-++-... ..+..++..+...|... ++..=..++.-+..+...+.-. -..++.++..+-.... ..
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP-~~sl~~~i~vLCsi~~--~~ 229 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP-SESLSPCIEVLCSIVN--SV 229 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC-hHHHHHHHHHHhhHhc--cc
Confidence 333333333332211 12567777776665443 3333355566565554432100 1124555555554422 22
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC--C----CCHHHHHHHHHHHHHHHhhChHHHhhh--h--HHH
Q 009182 252 KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--S----EWEATRIEALHWISTLLNRHRTEVLHF--L--NDI 321 (541)
Q Consensus 252 ~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~--~----~~~~~R~aal~wL~~L~~~~~~~i~~~--l--~~l 321 (541)
+..+.+.++...|. ++. .-...+..|...+. + ++...-..|+..++++.-+.+++-.|. . ..+
T Consensus 230 ~l~~~~w~~m~nL~---~S~----~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLL---KSH----LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHH---cCc----cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 55555666555553 321 01356666666662 2 234445578888988888874432222 2 248
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH
Q 009182 322 FDTLLKALSDPSDEVVLLVLEVHAC 346 (541)
Q Consensus 322 ~p~Ll~~L~D~~~~V~~~~~~~L~~ 346 (541)
+|.+.+.++-+++.|-..++.++.+
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ 327 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINR 327 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHH
Confidence 8999999886655444444444333
No 256
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.70 E-value=45 Score=40.74 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=87.7
Q ss_pred hhHHHHHHHhc--CCCH---HHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 009182 114 EFIPLLRERMN--VLNP---YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 114 ~~iP~L~e~l~--d~~~---~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
...|...+..+ -+.+ .|-..++..+.+.+...+.+ ++.+...+++-..|+++.+|-.|...+..+...+|.
T Consensus 1499 ~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge 1574 (1621)
T KOG1837|consen 1499 LSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGE 1574 (1621)
T ss_pred hhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcc
Confidence 34566666665 2333 45566777788887777776 444444455578899999999999999999999986
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc
Q 009182 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY 234 (541)
Q Consensus 189 ~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~ 234 (541)
...+..+..+|.+-+.+.|.+.+|-..+-.-++.+-+..|+.+..|
T Consensus 1575 ~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1575 NVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred hhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 6556689999999999999999998777777887877778765544
No 257
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=83.69 E-value=83 Score=35.50 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=81.8
Q ss_pred hhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHH---------HHHHh--hcCCCHHHHHHHH
Q 009182 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFD---------ALCKL--SADSDANVQSAAH 94 (541)
Q Consensus 26 ~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~---------~L~kl--~~D~d~~VR~~A~ 94 (541)
...|++-++.-......+-+..+|..++..+..+++..+-.....|-++.+ .|..- +.+.++.|--++.
T Consensus 240 sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i 319 (993)
T COG5234 240 SHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAI 319 (993)
T ss_pred hhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHH
Confidence 457888899999999999999999999999999887764332222222222 11111 2244555666663
Q ss_pred HHHHHHhHhhcccchhcHhh--hHHHHHHHhcCC--------CHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHH--H
Q 009182 95 LLDRLVKDIVTESDQFSIEE--FIPLLRERMNVL--------NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF--N 162 (541)
Q Consensus 95 ~L~~l~kdi~~e~~~~~l~~--~iP~L~e~l~d~--------~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~--~ 162 (541)
+.-.+.+. +..++.. +.|.+...++-+ ...+|...+-.+-.+.......+.+-+.+.+-.+. +
T Consensus 320 ~~~ala~~-----~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~ 394 (993)
T COG5234 320 LFFALAGA-----GLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQT 394 (993)
T ss_pred HHHHHhhc-----cccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhh
Confidence 22122221 1111111 344444444322 23455554433322222222222222333333322 4
Q ss_pred HcCCCCHHHHHHHHHHHHHHH
Q 009182 163 MLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 163 lL~D~~~eVR~~a~~~L~~ll 183 (541)
.+-||.-.||.+|..++-+.+
T Consensus 395 alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 395 ALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred hhcCchhhhhhHHHHHHHHHh
Confidence 778999999999988866554
No 258
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.62 E-value=18 Score=43.50 Aligned_cols=118 Identities=23% Similarity=0.195 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc-----hhcHhhhHHHHH-HHhcC----CCHHH----HHHHH
Q 009182 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-----QFSIEEFIPLLR-ERMNV----LNPYV----RQFLV 135 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~-----~~~l~~~iP~L~-e~l~d----~~~~v----R~~a~ 135 (541)
|--++-.|.+++.|.-++||+|| ..+=+++......-+ .--...++|.|- ..++. .+..+ -++.+
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 44567777789999999999999 776666543332211 122355677665 11110 01111 12233
Q ss_pred HHHHHhhcCCCc---------hhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 009182 136 GWITVLDSVPDI---------DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 136 ~~l~~L~~~~~~---------~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
-.|+-++++-+. ++......+++-+-+..+|.++++..+|..++.+++.++-.
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~ 1136 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIE 1136 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhh
Confidence 333333333221 22334445566666788999999999999999999887653
No 259
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=83.36 E-value=19 Score=30.65 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chhhHHHHHHH
Q 009182 291 EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVF 360 (541)
Q Consensus 291 ~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~~f~~~m~~ 360 (541)
.....|..++..++.+.+.+++.+..+.+++...|..+|.. ++.+..+++++..+.. ++++..+++..
T Consensus 27 ~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll~~ 96 (107)
T smart00802 27 KPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLLDQ 96 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999999975 5688999988888762 34444444433
No 260
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=83.36 E-value=1.6 Score=29.38 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.8
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIA 60 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~ 60 (541)
.+++++..++.++++++..|+.++.|++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 7888999999999999999999999986
No 261
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=83.23 E-value=7 Score=31.83 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=57.8
Q ss_pred hHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009182 279 PILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (541)
Q Consensus 279 ~il~~L~~~L-~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i 347 (541)
.++.-+...+ ...+.++|.-.+.++..+.+..++.+.+-.+.++..+-...+|+++.++..+.+++..|
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 4555555544 44678899999999999999999999999999999999999999999999998887643
No 262
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.86 E-value=61 Score=33.39 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCC
Q 009182 130 VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208 (541)
Q Consensus 130 vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~ 208 (541)
-|....+.+..+.. .+ .-+.+..++..++. |.++........++..-+..++ ..--+.++..+.+.++++
T Consensus 3 ~r~~~~~~L~~l~~---~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~---~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 3 QRVLHASMLSSLPS---SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS---SELPKKVVDAFKKGLKDK 73 (339)
T ss_pred HHHHHHHHHHhCCC---cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC---cCCCHHHHHHHHHHhcCC
Confidence 35555555554443 21 45677777777775 4677778888777776665552 112478999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-hcCcCcccchhhHHHHHhhhcCC----CChhHH--H--HHHHHHHHHH----HhhcC-CCCC
Q 009182 209 DEFTRLTAITWINEFVK-LGGDQLVPYYADILGAILPCISD----KEEKIR--V--VARETNEELR----AIKAD-PADG 274 (541)
Q Consensus 209 ~~~vr~~al~wL~~l~~-~~~~~l~p~l~~llp~ll~~l~d----~~~~iR--~--~A~~~~~~L~----~~i~~-~~~~ 274 (541)
.+-+|..-+.++++... ....+..++...++|.+++.+.. +-+... . .|.-... +. +.+.. ....
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~ 152 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISF 152 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhh
Confidence 88899886666665543 12234455666677777666643 211110 0 1111110 00 00000 0000
Q ss_pred C----C-hHhHH--HHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCC--CHHHHHHHHHHH
Q 009182 275 F----D-VGPIL--SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDP--SDEVVLLVLEVH 344 (541)
Q Consensus 275 ~----~-l~~il--~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l-~~l~p~Ll~~L~D~--~~~V~~~~~~~L 344 (541)
+ + =+.++ +.+...+ .+.+.-.-.++.+..+....+....+.. ..+..+++..+..+ +..||..+++++
T Consensus 153 ~~l~~~~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l 230 (339)
T PF12074_consen 153 WSLALDPKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSAL 230 (339)
T ss_pred hhhccCCCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 0 0 01111 1111221 2233333344444444444444443322 45666788888888 899999999999
Q ss_pred HHHhc-chhhHHH-HHHHHHHhcc
Q 009182 345 ACIAK-DLQHFRQ-LVVFLVHNFR 366 (541)
Q Consensus 345 ~~i~~-~~~~f~~-~m~~LL~~~~ 366 (541)
.++.. ++..+.. ++.++-+.+.
T Consensus 231 ~~l~~~~~~~l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 231 KKLYASNPELLSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHH
Confidence 99873 3333443 4444444443
No 263
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.56 E-value=32 Score=42.02 Aligned_cols=151 Identities=14% Similarity=0.054 Sum_probs=88.7
Q ss_pred hcchhHHHH-hhcCCCCHHHHHHHHHHHHHHHHH-hchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 30 LQQIVPPVL-NSFSDQDSRVRYYACEALYNIAKV-VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 30 l~~ii~~vl-~~l~D~d~~VR~~A~eaL~~i~k~-~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
..+++..+. ..+.+..|+||+++..=+...+-. .-+.......+|+..+.+++.|.+-+||+-| ..|..+++.---+
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 334444444 345577999999975543222210 0011223446888889999999999999999 7777665411000
Q ss_pred cchhcHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
..+.-.....+.... .+..-+-.++-.++.+.-.-|-++-.++|..+..+..+.+|+ ..++.++.+.+.+|-+
T Consensus 1604 ----~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1604 ----FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred ----cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHH
Confidence 011111122222221 223334556667777766655555557888888788888887 6678888888777754
Q ss_pred H
Q 009182 185 E 185 (541)
Q Consensus 185 ~ 185 (541)
.
T Consensus 1679 t 1679 (1710)
T KOG1851|consen 1679 T 1679 (1710)
T ss_pred H
Confidence 3
No 264
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.31 E-value=4 Score=35.62 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCC-----------hhHHHHHHHHH
Q 009182 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE-----------EKIRVVARETN 261 (541)
Q Consensus 193 ~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~-----------~~iR~~A~~~~ 261 (541)
.+..++.+|.++++++++.|+..|+.-|..++.-+++.+...+.+=...|-.+..+.. ..||..|.++.
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 3678899999999999999999999999999999888887777766666665555432 35888888877
Q ss_pred HHH
Q 009182 262 EEL 264 (541)
Q Consensus 262 ~~L 264 (541)
..+
T Consensus 115 ~~i 117 (122)
T cd03572 115 KAI 117 (122)
T ss_pred HHH
Confidence 655
No 265
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.31 E-value=61 Score=32.31 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhcCCC-----HHHHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcC
Q 009182 71 FNQIFDALCKLSADSD-----ANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSV 144 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d-----~~VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~~~ 144 (541)
+-..+|.+..-.++++ +.+++.|+.+.+.+++- +..++..++..+...-+ +.+..+++ .+..+.+
T Consensus 109 ~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~----~~~~La~il~~ya~~~fr~~~dfl~~----v~~~l~~- 179 (262)
T PF14225_consen 109 LLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ----GLPNLARILSSYAKGRFRDKDDFLSQ----VVSYLRE- 179 (262)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC----CCccHHHHHHHHHhcCCCCHHHHHHH----HHHHHHH-
Confidence 3456777777777776 78888888888877522 33345555555544333 22222222 2222221
Q ss_pred CCchhhhchH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009182 145 PDIDMLGFLP----DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWI 220 (541)
Q Consensus 145 ~~~~l~~~lp----~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL 220 (541)
.|+| ..+.-+..++....+.+|..+.+.|..+++.+... .+...+++..++...+.+-+. .|+.-+
T Consensus 180 ------~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~~---eAL~VL 249 (262)
T PF14225_consen 180 ------AFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLWM---EALEVL 249 (262)
T ss_pred ------HhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccHH---HHHHHH
Confidence 2333 33555667888888999999999999999877543 335677888888888776554 344445
Q ss_pred HHHHhhcCc
Q 009182 221 NEFVKLGGD 229 (541)
Q Consensus 221 ~~l~~~~~~ 229 (541)
.+....+|.
T Consensus 250 d~~v~~s~s 258 (262)
T PF14225_consen 250 DEIVTRSGS 258 (262)
T ss_pred HHHHhhccc
Confidence 555555554
No 266
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=81.04 E-value=1.7 Score=27.52 Aligned_cols=30 Identities=30% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCC
Q 009182 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS 85 (541)
Q Consensus 46 ~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~ 85 (541)
|.||+.|+++|.++.. ++..+.|.+.++|+
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhcCC
Confidence 4699999999998742 35567777766664
No 267
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.00 E-value=71 Score=32.89 Aligned_cols=210 Identities=19% Similarity=0.184 Sum_probs=107.8
Q ss_pred cchhHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 31 QQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 31 ~~ii~~vl~~l~-D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
..|+..+..+++ +.+.....++..++..=....+.++. +.+++.+.|.++|..+.||++- ..+...+.+......
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 345555556664 45666677777766553333322332 5788999999999999999988 666666651111111
Q ss_pred hhcHhhhHHHHHHHhcC--CCHHHH---HHHHHHHHHhh-cCCCchhhhc------------hHHHH--HHHHHHcCCCC
Q 009182 109 QFSIEEFIPLLRERMNV--LNPYVR---QFLVGWITVLD-SVPDIDMLGF------------LPDFL--DGLFNMLSDSS 168 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d--~~~~vR---~~a~~~l~~L~-~~~~~~l~~~------------lp~~L--~~L~~lL~D~~ 168 (541)
..-...|+|.|.+.+.. .||.-+ ..+..+.-.+. .....+-... =|.|+ +.+++-+ .+
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~~ 175 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--AS 175 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--CC
Confidence 23356678888777743 222221 11111111111 0000000000 01111 1122221 23
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhh
Q 009182 169 HEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 245 (541)
Q Consensus 169 ~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~~~~--~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~ 245 (541)
.|.-.-...++..+..........+ ....-..++..+-++ .+.+|..|+.-+..+..-.+.. .-..++..+-+.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~ 252 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKW 252 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHH
Confidence 3333334455555554443221122 245566666666666 8999999999888776655443 234556666666
Q ss_pred cCC
Q 009182 246 ISD 248 (541)
Q Consensus 246 l~d 248 (541)
+.+
T Consensus 253 l~~ 255 (339)
T PF12074_consen 253 LSS 255 (339)
T ss_pred HHh
Confidence 654
No 268
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=80.53 E-value=39 Score=35.56 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=93.1
Q ss_pred HHHHhhhhhhcchh----hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHH
Q 009182 14 EQFLLYADLFFYSE----TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANV 89 (541)
Q Consensus 14 ~~~~~~~~~~~~~~----~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~V 89 (541)
||+.++...+-+.. ..-..++..+.++.++++.+.|..|-+.+-+++-. .++.. ..-.-+..+.+.+.|+..++
T Consensus 86 ~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv-~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELV-AECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHH-HHcCCHHHHHHHHHhccHhH
Confidence 46666665555542 23345678888899999999999999888877632 12221 11123455556566644442
Q ss_pred HHHHHHHHHHHhHhhccc-------chhcHhhhHHHHHHH----hcCCC--HHHHHHHHHHHHHhhcCCCchhhhchH-H
Q 009182 90 QSAAHLLDRLVKDIVTES-------DQFSIEEFIPLLRER----MNVLN--PYVRQFLVGWITVLDSVPDIDMLGFLP-D 155 (541)
Q Consensus 90 R~~A~~L~~l~kdi~~e~-------~~~~l~~~iP~L~e~----l~d~~--~~vR~~a~~~l~~L~~~~~~~l~~~lp-~ 155 (541)
-+ ..+..++. ++..+ ..++++.++-.+.+. ..+.. ...+.........+-+.+|.=....=+ .
T Consensus 164 ~~--~l~~~lL~-lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~ 240 (371)
T PF14664_consen 164 SE--SLLDTLLY-LLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR 240 (371)
T ss_pred HH--HHHHHHHH-HhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence 22 22222322 22221 246677777777776 23322 233444444445566667642211111 4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 156 FLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 156 ~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
-++.|...|.-|++++|+.....+-+++
T Consensus 241 ~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 241 GLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5777888899999999998855544444
No 269
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.49 E-value=1.3e+02 Score=37.01 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=61.4
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009182 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (541)
Q Consensus 277 l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i 347 (541)
+.++...+.....++....|..|+..+..++.+-++...+++++.+|++-+.+.|.+++|-..+-+++..+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~ 1609 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQL 1609 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 66776667777778888899999999999999999999999999999999999999999888776655544
No 270
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=80.48 E-value=89 Score=33.69 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhchHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-ChHHHHHHHHHhc
Q 009182 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLD-GLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRA 205 (541)
Q Consensus 128 ~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~-~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~-~~~~ii~~Ll~~~ 205 (541)
-..|..+..+++.+.+..+. .-+..+.. .|..+|+.++..-|..+.-.+.+..+..+..... ..+.+.+.|...+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 46799999999998876543 23334444 3556888888888888888888887766533211 1367777777777
Q ss_pred CCCC-----------HHHHHHHHHHHHHHHhhcC--cCcccchhhH
Q 009182 206 ASPD-----------EFTRLTAITWINEFVKLGG--DQLVPYYADI 238 (541)
Q Consensus 206 ~~~~-----------~~vr~~al~wL~~l~~~~~--~~l~p~l~~l 238 (541)
.++. ..+|..|-..+..|.+.+. ..-+|.+|.+
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~ 223 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVV 223 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccc
Confidence 6432 1355666667776766543 3334444433
No 271
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.43 E-value=22 Score=31.41 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=61.2
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhcC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D~~--~eVR~~a~~~L~~ll~~i~~ 188 (541)
...+..|..++.+.||.+...++..+..+.+..|..+-..+ -.|++.|.++++++. +.||+.+...+..--..++.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 34477788899999999999999999999998887765444 357888888888753 34999998888888888865
No 272
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.76 E-value=14 Score=35.07 Aligned_cols=133 Identities=14% Similarity=0.027 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC-CChhHHHHH-HHHHHHHHHhhcCCC
Q 009182 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KEEKIRVVA-RETNEELRAIKADPA 272 (541)
Q Consensus 195 ~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d-~~~~iR~~A-~~~~~~L~~~i~~~~ 272 (541)
+..........+++..+.|..|+..+...... +-+..++.+-..+.+ ++-++-+.. .+..+.+. .
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~-------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~---~--- 116 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKK-------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLL---K--- 116 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHH---H---
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhh-------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHH---H---
Confidence 44445555556777888888888776543221 123345555555554 222322221 22222221 1
Q ss_pred CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 273 ~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
+.+...+.+.+-..+++..+|.+++..+...... ...+.++..+-..+.|++.-|+....|+|..++.
T Consensus 117 ---~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 117 ---KHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp ---HHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred ---hhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 1145677777888888888888887655444444 4667888888888999999999999999999994
No 273
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=79.57 E-value=1.2e+02 Score=34.56 Aligned_cols=110 Identities=23% Similarity=0.218 Sum_probs=71.2
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHH--HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchh
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFN--QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~--~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~ 110 (541)
+|.++.++..+++.|..-|+--+..+...-. ++..... .=++.|+.++..+..+|..+| .+|.+++-+-...++.-
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~-~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDN-KIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhH-HHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 4778888888888888877766665553211 1111111 235677888999999999999 88877753222211100
Q ss_pred cH--hhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 009182 111 SI--EEFIPLLRERMNV-LNPYVRQFLVGWITVLDSV 144 (541)
Q Consensus 111 ~l--~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~ 144 (541)
.+ -.=||.+.+.++. .|.+||+.+-..+-+|.+.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 00 0117888888886 7899999999888777665
No 274
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.43 E-value=7.3 Score=33.81 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=45.5
Q ss_pred chhHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhch--hhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHH
Q 009182 32 QIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV 100 (541)
Q Consensus 32 ~ii~~vl~~l-~D~d~~VR~~A~eaL~~i~k~~~~--~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~ 100 (541)
+++..+...+ ...|+.+-..||.-++.+++.... .+... -..=+.+.++++++|++||..| .++.+++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3566666666 344888888889999998887632 22211 1344556788999999999999 7766653
No 275
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=78.16 E-value=16 Score=32.69 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHhc
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDGLFNMLSD------SSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp--~~L~~L~~lL~D------~~~eVR~~a~~~L~~ll~~i~ 187 (541)
+..+..++++.||.+-..+++.+..+.+..|..+-..+- +|+..+.+++++ +++.||..+...+..--..++
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 666778889999999999999999999988887654443 567778878863 578999999888888887776
Q ss_pred C
Q 009182 188 N 188 (541)
Q Consensus 188 ~ 188 (541)
.
T Consensus 120 ~ 120 (139)
T cd03567 120 H 120 (139)
T ss_pred c
Confidence 3
No 276
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=78.06 E-value=97 Score=32.73 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=59.6
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHH--HHHhhChHHHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhc-chhhH
Q 009182 279 PILSIATRQLSSEWEATRIEALHWIS--TLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAK-DLQHF 354 (541)
Q Consensus 279 ~il~~L~~~L~~~~~~~R~aal~wL~--~L~~~~~~~i~~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~~-~~~~f 354 (541)
++...+...+.+++..+-+.|+..+. .+.....+.-.-.+|-++|+|.+.-+.- ...|+..++.+++-+.+ +...|
T Consensus 341 PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LF 420 (457)
T KOG2085|consen 341 PLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLF 420 (457)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 45556667778888888777775432 2222222222334667888887765533 56788899999988884 55666
Q ss_pred HHHHHHHHHhccccchhhhhhHHHH
Q 009182 355 RQLVVFLVHNFRVDNSLLEKRGALI 379 (541)
Q Consensus 355 ~~~m~~LL~~~~~~~~ll~~r~~~i 379 (541)
+.-...-..-=..++...+.|.+.|
T Consensus 421 eec~~~y~~~~~k~~~~~~~re~~W 445 (457)
T KOG2085|consen 421 EECLALYKEDRWKEKETEEKREETW 445 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544433333333334444433
No 277
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=77.67 E-value=19 Score=30.67 Aligned_cols=78 Identities=19% Similarity=0.133 Sum_probs=53.8
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHH--HHHHHHHH-----h-hcCCCHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFN--QIFDALCK-----L-SADSDAN 88 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~--~i~~~L~k-----l-~~D~d~~ 88 (541)
..++|...+-......++..+..-+++++|++.+.|...+..+++.++..+...+. .....+.+ . -.|.+..
T Consensus 22 ~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~ 101 (115)
T cd00197 22 MEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTN 101 (115)
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChH
Confidence 34555555544666778899999999999999999999999999998765543321 12222322 1 1366888
Q ss_pred HHHHHH
Q 009182 89 VQSAAH 94 (541)
Q Consensus 89 VR~~A~ 94 (541)
||+-+.
T Consensus 102 Vr~k~~ 107 (115)
T cd00197 102 VREKAI 107 (115)
T ss_pred HHHHHH
Confidence 998873
No 278
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=77.00 E-value=32 Score=30.65 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=60.4
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhcCCCH--H--HH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSADSDA--N--VQ 90 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~D~d~--~--VR 90 (541)
+.+.|.+......-.+.+..+.+-++.+++.|...|...+..++++++..+-..+ .+.++.+.+++.++.. . ||
T Consensus 27 l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk 106 (140)
T PF00790_consen 27 LEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVK 106 (140)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHH
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHH
Confidence 5667777776667788889999999999999999999999999999876543221 2456667776654332 2 78
Q ss_pred HHH-HHHHHHHh
Q 009182 91 SAA-HLLDRLVK 101 (541)
Q Consensus 91 ~~A-~~L~~l~k 101 (541)
+-+ +.+..--.
T Consensus 107 ~k~l~ll~~W~~ 118 (140)
T PF00790_consen 107 EKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 55444433
No 279
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=76.91 E-value=71 Score=30.55 Aligned_cols=177 Identities=16% Similarity=0.113 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc
Q 009182 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (541)
Q Consensus 153 lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~ 232 (541)
+..++..-+.+++=+.|++|+.+-..+.. .. ..+.+..........+++..+.|..|+.++........
T Consensus 10 m~~y~k~~~~f~Gv~~P~~R~lak~~~~~----~~---~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~---- 78 (208)
T cd07064 10 MKAYMKNQFPFYGIKTPERRALSKPFLKE----SK---LPDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLT---- 78 (208)
T ss_pred HHHHHhcCCccCCCChHHHHHHHHHHHHH----cC---CCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCC----
Confidence 33444444456666778888877444322 22 11123333333344556666789888887765433222
Q ss_pred cchhhHHHHHhhhcCCCC-hh-HHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC
Q 009182 233 PYYADILGAILPCISDKE-EK-IRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (541)
Q Consensus 233 p~l~~llp~ll~~l~d~~-~~-iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~ 310 (541)
+.-++.+...+.+-+ =+ +-..|....|.+ +. +.+...+.+.+-..+++.-.|.+|+.......+..
T Consensus 79 ---~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~---~~------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~ 146 (208)
T cd07064 79 ---PEDLPLLEELITTKSWWDTVDSLAKVVGGIL---LA------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT 146 (208)
T ss_pred ---HHHHHHHHHHHcCCchHHHHHHHHHHHhHHH---Hh------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc
Confidence 222444444443311 11 111222333332 11 12344566666667888777777775433322221
Q ss_pred hHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-chhhHHHHH
Q 009182 311 RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLV 358 (541)
Q Consensus 311 ~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-~~~~f~~~m 358 (541)
..+.++..+...+.|+..-|+..+-|+|..++. +.+--..|+
T Consensus 147 ------~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 147 ------DTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred ------CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 235666777788889888888888999999994 333334444
No 280
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=76.78 E-value=16 Score=34.65 Aligned_cols=139 Identities=19% Similarity=0.178 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcC-CCHHHHHHHHHHH-HHhhcCCCchhh
Q 009182 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWI-TVLDSVPDIDML 150 (541)
Q Consensus 74 i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l-~~L~~~~~~~l~ 150 (541)
.......+..++..+.|-.| ..++...+. .+ ...++.+...+.+ .++.+--.++..+ +.+. .
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~-~~-------~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~-------~ 116 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKK-LT-------EEDLELLEKWLPDIDNWATCDSLCSKLLGPLL-------K 116 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG----------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHH-------H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhh-hh-------HHHHHHHHHHhccCCcchhhhHHHHHHHHHHH-------H
Confidence 33444456777777777777 333332111 10 1135555555554 5666655554332 2211 0
Q ss_pred hchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 151 ~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
.+ |...+.+.+++.+.++=+|+.+..++-.+ +.. .+.+.+...+.....++++.||.+.-.+|.++....++.
T Consensus 117 ~~-~~~~~~~~~W~~s~~~w~rR~~~v~~~~~---~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 117 KH-PEALELLEKWAKSDNEWVRRAAIVMLLRY---IRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp HH-GGHHHHHHHHHHCSSHHHHHHHHHCTTTH---GGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred hh-HHHHHHHHHHHhCCcHHHHHHHHHHHHHH---HHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 11 66777778899899988888886554333 221 456778888888888888888888777777665544433
Q ss_pred cccc
Q 009182 231 LVPY 234 (541)
Q Consensus 231 l~p~ 234 (541)
..+|
T Consensus 190 v~~~ 193 (213)
T PF08713_consen 190 VLEF 193 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 281
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.50 E-value=57 Score=29.23 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=60.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
..-+..+..++.+.||.+...++..+..+.+..|..+-..+ -+|++.+.++++ .+++.||+.+...+..-...++..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34477788899999999999999999999988887654333 466777888886 467899999988888888877643
No 282
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.38 E-value=1.9e+02 Score=35.31 Aligned_cols=229 Identities=17% Similarity=0.172 Sum_probs=116.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCC---CHHHHHHH-HHHHHHHhHhhcccchhcHh
Q 009182 38 LNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS---DANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (541)
Q Consensus 38 l~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~---d~~VR~~A-~~L~~l~kdi~~e~~~~~l~ 113 (541)
+..+..+-.+||...-+++.+|.+..+.....-|..+++-+-.+.+-. +.++-.-+ ..|.-++.|.+..-+.-.+.
T Consensus 848 v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 848 VSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred HHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 445566667777777788888887666555555777777776443222 33333333 44433344444322222233
Q ss_pred hhHHHHHHHhcC-CCHHHHHHHHHHHHHhhc---C----CCchh---------------hhchHH-----HHHHHHHHcC
Q 009182 114 EFIPLLRERMNV-LNPYVRQFLVGWITVLDS---V----PDIDM---------------LGFLPD-----FLDGLFNMLS 165 (541)
Q Consensus 114 ~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~---~----~~~~l---------------~~~lp~-----~L~~L~~lL~ 165 (541)
.+|..+....+- +|..+-..+++.+=.+.. . .+.+. -..+|+ ++..|.++-.
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 334444333321 333333333332211100 0 00000 012222 2333445556
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCC---C--h-HHHHHHHHHhcCCC------CHHHH----HHHHHHHHHHHhhcCc
Q 009182 166 DSSHEIRQQADSALWEFLQEIKNSPSV---D--Y-GRMAEILVQRAASP------DEFTR----LTAITWINEFVKLGGD 229 (541)
Q Consensus 166 D~~~eVR~~a~~~L~~ll~~i~~~~~~---~--~-~~ii~~Ll~~~~~~------~~~vr----~~al~wL~~l~~~~~~ 229 (541)
|.-++||..|++.+=+.+..-+..-.. + + .-|+|.+ .....+ ..+++ .+++..|+-++++.++
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLL-d~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLL-DSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHh-ccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 788999999988866665544433222 1 2 3333433 321111 22332 2345555555555433
Q ss_pred ---------CcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 009182 230 ---------QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (541)
Q Consensus 230 ---------~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~ 267 (541)
++..-+..++..+.....|..+++.-+|.++.+++...
T Consensus 1087 ~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1087 NFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 22333456666777777888999999999998887643
No 283
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=76.17 E-value=40 Score=29.03 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=47.0
Q ss_pred hHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 009182 277 VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (541)
Q Consensus 277 l~~il~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~ 350 (541)
+..++|.+.+.+. +...+.|.++...++.++.+.+=.- +.++.++..+++....... ...++-++..+.+.
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-EVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 4678999999998 7778899999999999999984221 1223333444443333332 35566777777743
No 284
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.92 E-value=54 Score=38.81 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=94.1
Q ss_pred hhhhHHHHHHHHHH-HhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009182 66 DFIIFFNQIFDALC-KLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS 143 (541)
Q Consensus 66 ~~~~~~~~i~~~L~-kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~ 143 (541)
++...++.+|+.++ .-.-|.++++|.-. +.|+--++ .=++.|.-..++..+--.+.|.+..||...+.++..|..
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~---~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIK---SYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHH---hccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHh
Confidence 45556666777654 34579999999765 44443333 223456667789999999999999999999999998876
Q ss_pred CCC--chhhhchHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009182 144 VPD--IDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWI 220 (541)
Q Consensus 144 ~~~--~~l~~~lp~~L~~L~~lL-~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL 220 (541)
.-. ..+..+...|=+.+..|. .|-+..||......+.... .-+--. ++=+..+...+.+.++.++.+|.+.+
T Consensus 356 ~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~-~~g~L~----d~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 356 KDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS-SSGLLS----DKDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh-cccccC----hhHHHHHHHHHhccCcchHHHHHHHH
Confidence 622 224456666667777777 5667788877643332221 111111 22233444556677888887776544
Q ss_pred H
Q 009182 221 N 221 (541)
Q Consensus 221 ~ 221 (541)
.
T Consensus 431 ~ 431 (1048)
T KOG2011|consen 431 Y 431 (1048)
T ss_pred H
Confidence 3
No 285
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=75.90 E-value=2.3 Score=29.60 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.3
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHH
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEA 55 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~ea 55 (541)
.+...+...+.|+++.||.+|-+.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 677889999999999999999764
No 286
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=75.88 E-value=36 Score=30.31 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=60.8
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCCCC--HH--HHHHHHHHHHHHHHH
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSS--HE--IRQQADSALWEFLQE 185 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D~~--~e--VR~~a~~~L~~ll~~ 185 (541)
....+..|..++.+.||.+...++..+..+.+..|..+...+ .+|++.+.+++.++. +. ||+.+...+...-..
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 345577888999999999999999999999988887665443 467888888887643 33 899998998888888
Q ss_pred hcC
Q 009182 186 IKN 188 (541)
Q Consensus 186 i~~ 188 (541)
++.
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 853
No 287
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.78 E-value=9.9 Score=33.02 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=42.4
Q ss_pred HHHHHHHHhhc-CCCHHHHHHH-HHHHHHHhHhhcccchhcH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 009182 73 QIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTESDQFSI--EEFIPLLRERMNVLNPYVRQFLVGWITVLD 142 (541)
Q Consensus 73 ~i~~~L~kl~~-D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l--~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~ 142 (541)
+++..|.++++ +.|+.+-..| .-++.+++-... +...+ -..-..+++.+.++|++||+.|+.+++.+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 57778888773 3355555555 556666653322 11111 223567789999999999999999998653
No 288
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.77 E-value=77 Score=32.71 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCch
Q 009182 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDID 148 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~ 148 (541)
..++.++++-++.|-|-.|--|- .. -.+.++.+.. +-.|.|.+.. .+|.+-..++..++.++--...-
T Consensus 207 VRel~~a~r~l~~dDDiRV~fg~ah~---hAr~ia~e~~-------l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C 276 (461)
T KOG4199|consen 207 VRELYDAIRALLTDDDIRVVFGQAHG---HARTIAKEGI-------LTALTEALQAGIDPDSLVSLSTTLKALAVRDEIC 276 (461)
T ss_pred HHHHHHHHHHhcCCCceeeecchhhH---HHHHHHHhhh-------HHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCC-------CCChHHHHHHHHHhcCCCC-----------
Q 009182 149 MLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSP-------SVDYGRMAEILVQRAASPD----------- 209 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~~-------~~~~~~ii~~Ll~~~~~~~----------- 209 (541)
-..-=..-++.|+.++.| ....+|+.+-+++.-+-..-|+.. ....+.|+..+..+..++.
T Consensus 277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~ 356 (461)
T KOG4199|consen 277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISI 356 (461)
T ss_pred HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHH
Q ss_pred -------------------------------HHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHH
Q 009182 210 -------------------------------EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVAR 258 (541)
Q Consensus 210 -------------------------------~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~ 258 (541)
..++.+++..|++++.-+.+.-.+.+..=+..++..-...++..+..|.
T Consensus 357 l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~ak 436 (461)
T KOG4199|consen 357 LCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAK 436 (461)
T ss_pred HHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHH
Q ss_pred HHHHHH
Q 009182 259 ETNEEL 264 (541)
Q Consensus 259 ~~~~~L 264 (541)
.++..|
T Consensus 437 aALRDL 442 (461)
T KOG4199|consen 437 AALRDL 442 (461)
T ss_pred HHHHhc
No 289
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.26 E-value=33 Score=30.73 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=58.2
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhc-CCCHHHHHHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSA-DSDANVQSAA 93 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~-D~d~~VR~~A 93 (541)
+.+.|.+......-.+.+..+.+-++.+++.|...|...+..++++|+..+-..+ .+..+.+.++++ .+++.||+-+
T Consensus 26 leicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~ki 105 (142)
T cd03569 26 LEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKI 105 (142)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHH
Confidence 4466666665555667788888899999999999999999999999875432111 345566666664 6777888777
Q ss_pred -HHHHH
Q 009182 94 -HLLDR 98 (541)
Q Consensus 94 -~~L~~ 98 (541)
..+..
T Consensus 106 l~li~~ 111 (142)
T cd03569 106 LELIQA 111 (142)
T ss_pred HHHHHH
Confidence 54443
No 290
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=74.71 E-value=1.8e+02 Score=34.61 Aligned_cols=132 Identities=18% Similarity=0.128 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC
Q 009182 213 RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 292 (541)
Q Consensus 213 r~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~ 292 (541)
+.--+..+....-..|.++.||...++-.+++.|.+...+--.........+.+...+++ +-.+.+..+++. +
T Consensus 122 ~s~~i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e~es~e~~~l~~hLi~tl~k~L~d~~--~fw~~~w~ill~-----~ 194 (1618)
T COG5221 122 VSSFIDLIERYIVPLGKDVRSYCTSILISLLPGMEFESGEYYSLRAHLIITLFKSLIDPD--VFWSSMWGILLN-----D 194 (1618)
T ss_pred HHHHHHHHHhheeecCccHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHhcCChh--HHHHHHHHHHhc-----C
Confidence 333334444333335688999999999999999988655533322333444444433221 112333333321 2
Q ss_pred HHHHHHHHHHHHHHHhhCh-----H-HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcch
Q 009182 293 EATRIEALHWISTLLNRHR-----T-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL 351 (541)
Q Consensus 293 ~~~R~aal~wL~~L~~~~~-----~-~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~ 351 (541)
...|-.++.|+..-..+.. + -+.|+-.-++-++..++.|.+-.|+..++.+|-.....+
T Consensus 195 ~~~R~g~l~~l~reeNNdsh~d~~~rlI~p~~gL~VR~l~a~l~dndiLV~R~~lDlLl~~fp~~ 259 (1618)
T COG5221 195 ERLRTGVLNSLMREENNDSHMDWSERLILPHAGLMVRALCAGLGDNDILVVRNCLDLLLFVFPDK 259 (1618)
T ss_pred ccccchHHHHHHHHhcCcchhchhhhccCCCcchhHHHHHhhcCCCceeeehhHHHHHHHHcccc
Confidence 3346666666655322221 1 267888888999999999988889999999888877433
No 291
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=74.61 E-value=5.2 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 320 ~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
+.+|.+++.++.++++++..++++|..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788889998889999999999999875
No 292
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.02 E-value=95 Score=30.63 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=53.1
Q ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 282 SIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 282 ~~L~~~L~~-~~~~~R~aal~wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
|.|.-...+ +.+--|.+++-.++++.+...+++..++ .+++|..++.+...++..+..+.-.+.+|-.
T Consensus 127 pfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 127 PFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred HhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 333333433 4455799999999999999999987764 4689999999998888888888888888773
No 293
>PF14750 INTS2: Integrator complex subunit 2
Probab=73.72 E-value=2.1e+02 Score=34.45 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=52.1
Q ss_pred HHHHHHh-cchhhHHHHHHHHHHhc--cccchhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhc---------ccCChH
Q 009182 342 EVHACIA-KDLQHFRQLVVFLVHNF--RVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILE---------GEADLD 407 (541)
Q Consensus 342 ~~L~~i~-~~~~~f~~~m~~LL~~~--~~~~~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~---------~~~d~~ 407 (541)
+++.++. ..++.|+.++..|+... .++....+.....+++.||..-.. +.|...+.+--. .+-.-.
T Consensus 179 ~li~~LvaN~Pd~f~~vv~~LI~~~e~~de~s~~gr~R~~~L~~L~~m~Ps~a~~ir~~~ve~~~lp~Lav~Ltld~~~~ 258 (1049)
T PF14750_consen 179 WLICRLVANMPDSFEEVVNSLISNGERQDEESSRGRQRNETLRKLCKMNPSQALRIRSKCVELCKLPGLAVRLTLDHLHD 258 (1049)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhccccccccccchHHHHHHHHHHHHhChHHHHHHHHHHHHHccChHHHHHHHhhcccc
Confidence 6677755 67889999999999765 122222233346799999876554 344333322211 110002
Q ss_pred HHHHHHHHhHHhhc--CcHhHHHHHHHHhh
Q 009182 408 FACTMVQALNLILL--TSSELSELRDLLKK 435 (541)
Q Consensus 408 f~~~~v~~L~~il~--t~~el~~~R~~L~~ 435 (541)
..+.+|..+..+|+ ....-.-|-.++++
T Consensus 259 ~~~dlv~fls~lLLg~~~~~r~w~~~fi~~ 288 (1049)
T PF14750_consen 259 QDSDLVAFLSGLLLGSDQNIRSWFAQFIRN 288 (1049)
T ss_pred cchhHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 33466666767777 23333555555554
No 294
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=72.76 E-value=14 Score=32.62 Aligned_cols=125 Identities=20% Similarity=0.247 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC--CC--------------C
Q 009182 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PS--------------V 192 (541)
Q Consensus 129 ~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~--~~--------------~ 192 (541)
.||..++..+..+.... .-..-|++++.+++.++. ++.........|..+.+++.+. .. .
T Consensus 3 ~i~~kl~~~l~~i~~~~---~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRD---WPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHH---TTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH---ChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 45566666665554321 113456667777767666 4555666777788888877641 10 0
Q ss_pred ChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHH
Q 009182 193 DYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (541)
Q Consensus 193 ~~~~ii~~Ll~~~~~~~----~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~ 260 (541)
..+.+++++.+.+.... .+....++.-++.+..-.+..... -+.+++.+++.+. +++.++.|.++
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~-~~~~l~~~~~~l~--~~~~~~~A~~c 147 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELII-NSNLLNLIFQLLQ--SPELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH-SSSHHHHHHHHTT--SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc-cHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 13445555544433322 666777776666555533322221 2358888888884 45557777765
No 295
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=72.55 E-value=2.1 Score=26.65 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcC
Q 009182 48 VRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (541)
Q Consensus 48 VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D 84 (541)
||++|+.+|+++.. ++.+|.|.+.++|
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhcC
Confidence 79999999997752 4567777666543
No 296
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.43 E-value=72 Score=28.52 Aligned_cols=88 Identities=13% Similarity=0.133 Sum_probs=64.7
Q ss_pred HHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh--hHHHHHHHHHhcCC-----
Q 009182 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD----- 331 (541)
Q Consensus 259 ~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~--l~~l~p~Ll~~L~D----- 331 (541)
..+-.+.+.+..++. .-...+..+.+.+.+.+..+-.-||..+-++.++|+..+... ...++..+++.+++
T Consensus 20 ~~ileicD~In~~~~--~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~ 97 (139)
T cd03567 20 EAIQAFCEQINKEPE--GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGS 97 (139)
T ss_pred HHHHHHHHHHHcCCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCC
Confidence 344455566654322 224678889999999998899999999999999999877432 24566678888863
Q ss_pred -CCHHHHHHHHHHHHHHh
Q 009182 332 -PSDEVVLLVLEVHACIA 348 (541)
Q Consensus 332 -~~~~V~~~~~~~L~~i~ 348 (541)
.++.|+.+.+.++..-+
T Consensus 98 ~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 98 RTSEKVKTKIIELLYSWT 115 (139)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 46899999988777665
No 297
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=72.34 E-value=1.4e+02 Score=31.87 Aligned_cols=234 Identities=13% Similarity=0.050 Sum_probs=120.4
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHhc
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~-----D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
++|...+...+.+.|.+......-.|++++..-..-+.-.=.+++..|..++. |.+-++.-+++++|..+.--..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 34677777777777877777777788888765443322222344555554442 4455556777788877752221
Q ss_pred CCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 188 ~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~---~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
+....--..+.+.++...+...|.+...-+..++.+..-.+ ..+. --|+++.-+..+-..++. -.++.+.|..+
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~-kn~~l~ekLv~Wsks~D~--aGv~gESnRll 470 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELA-KNPELFEKLVDWSKSPDF--AGVAGESNRLL 470 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHh-cCHHHHHHHHHhhhCCcc--chhhhhhhHHH
Confidence 11111123455566666665555554433333332211100 0111 125556666655544332 23344445544
Q ss_pred HHhhcCCCC-----CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHH--HHHHHHHhcCCCC--HH
Q 009182 265 RAIKADPAD-----GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND--IFDTLLKALSDPS--DE 335 (541)
Q Consensus 265 ~~~i~~~~~-----~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~--l~p~Ll~~L~D~~--~~ 335 (541)
.-+++.... .++-...++....++..++......|+-++..+..+.+.....-++. +...+.+...++. +.
T Consensus 471 ~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~~ 550 (604)
T KOG4500|consen 471 LGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAATI 550 (604)
T ss_pred HHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhHH
Confidence 444432110 11222346667777777777777777777777777766554433332 2234556666552 34
Q ss_pred HHHHHHHHHHHHhc
Q 009182 336 VVLLVLEVHACIAK 349 (541)
Q Consensus 336 V~~~~~~~L~~i~~ 349 (541)
+...+...+..|-+
T Consensus 551 I~~~s~~~~k~~~E 564 (604)
T KOG4500|consen 551 IASPSYEALKSYRE 564 (604)
T ss_pred hcCcHHHHHHHHHH
Confidence 44455566666653
No 298
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.10 E-value=1.1e+02 Score=30.50 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=107.6
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh--------hchHHHHHHHHHHcCCCC-----HHHHHHHHH
Q 009182 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML--------GFLPDFLDGLFNMLSDSS-----HEIRQQADS 177 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~--------~~lp~~L~~L~~lL~D~~-----~eVR~~a~~ 177 (541)
.-+.+-|.+...++..+ .-...++.+..+...+...++ ..+=..+|.+..-+.+++ +++++.| +
T Consensus 61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A-~ 137 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA-E 137 (262)
T ss_pred CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH-H
Confidence 34567788888886644 445556667777666544332 233344666666676666 5666655 6
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhcCcCcc-cchhhHHHHHhhhcCCCChhHHH
Q 009182 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRV 255 (541)
Q Consensus 178 ~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~-~~~~~vr~~al~wL~~l~~~~~~~l~-p~l~~llp~ll~~l~d~~~~iR~ 255 (541)
.+....+.-+ .+++..++.-..++.. +.+ .|+...++.-.+.+. .|-.+++..++..+....+.+|.
T Consensus 138 ~La~~a~~~~---~~~La~il~~ya~~~fr~~~--------dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 138 ALAQVAEAQG---LPNLARILSSYAKGRFRDKD--------DFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHHHhCC---CccHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHH
Confidence 7776764332 4567777766665433 223 344443333333332 24457788888888888888888
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHH
Q 009182 256 VARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWI 303 (541)
Q Consensus 256 ~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL 303 (541)
...+....+...+.-... .-.+++..+.+.++++.|..-..+++..
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLWMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 877777777655443211 2356888999999988887655555543
No 299
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=71.65 E-value=2.1e+02 Score=33.44 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC
Q 009182 170 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD 248 (541)
Q Consensus 170 eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~-~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d 248 (541)
.+|.+..+.+++..-.-. ..-.-.++++-.+++...+++. +.|...+..++.+....++...|-.+.+++.+.+.-.-
T Consensus 508 T~~~a~~t~~~~~n~~~~-~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~ 586 (947)
T COG5657 508 TTREAYSTIFDDWNFSVC-SKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEI 586 (947)
T ss_pred HHHHHHHHHHHhcccccc-cccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHH
Confidence 346666555554432111 1122367888888888877754 44666778888888888888888777888777664432
Q ss_pred --CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHH
Q 009182 249 --KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 325 (541)
Q Consensus 249 --~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~-~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~L 325 (541)
.+|..+..+......+...+..... -.+..+|.+...+.-+. ...-+.+...++.+...-..-...+....+|.+
T Consensus 587 ~~knps~p~~~h~~fe~I~al~~~~~~--~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v 664 (947)
T COG5657 587 NAKNPSNPQFAHYTFEDIGALVFLKSG--MCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSV 664 (947)
T ss_pred HccCCccHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchH
Confidence 3555544333333222222211100 11345565555553331 222333444333333332221222223335555
Q ss_pred HHhcCCC
Q 009182 326 LKALSDP 332 (541)
Q Consensus 326 l~~L~D~ 332 (541)
.+.+..+
T Consensus 665 ~~~l~q~ 671 (947)
T COG5657 665 VKILRQP 671 (947)
T ss_pred HHHHhcc
Confidence 5555544
No 300
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.64 E-value=67 Score=28.25 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=62.8
Q ss_pred HHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh-hH-HHHHHHHHhcCCC---CHH
Q 009182 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LN-DIFDTLLKALSDP---SDE 335 (541)
Q Consensus 261 ~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~-l~-~l~p~Ll~~L~D~---~~~ 335 (541)
+-.+.+.+... ...-...+..|.+.+.+.+..+...|+..+-.+..+|+..+... .. +.+..+.+.++.+ ++.
T Consensus 21 il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~ 98 (133)
T cd03561 21 NLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPK 98 (133)
T ss_pred HHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHH
Confidence 33444555433 12346788999999999999999999999999999998876432 22 4555677777753 678
Q ss_pred HHHHHHHHHHHHh
Q 009182 336 VVLLVLEVHACIA 348 (541)
Q Consensus 336 V~~~~~~~L~~i~ 348 (541)
|+.+.++++..-+
T Consensus 99 Vk~kil~ll~~W~ 111 (133)
T cd03561 99 VREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877665
No 301
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=70.07 E-value=82 Score=28.18 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=57.4
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCchhhhchH--HHHHH-HHHHcCC---CCHHHHHHHHHHHHHHHHHh
Q 009182 114 EFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLSD---SSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 114 ~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp--~~L~~-L~~lL~D---~~~eVR~~a~~~L~~ll~~i 186 (541)
.-+..+..++. ..||.+...++..+..+.+..|..+...+- +|++. |.+++.+ +..+||..+...+...-..+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 33666677776 478999999999999999998876654333 66776 7777764 45689999988888888888
Q ss_pred cCC
Q 009182 187 KNS 189 (541)
Q Consensus 187 ~~~ 189 (541)
+..
T Consensus 118 ~~~ 120 (141)
T cd03565 118 RGS 120 (141)
T ss_pred CCC
Confidence 643
No 302
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=69.20 E-value=3e+02 Score=34.41 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=91.0
Q ss_pred hhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 009182 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (541)
Q Consensus 150 ~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~ 229 (541)
-.|+|.++.-.-.++.-+++.|+..+......+-..+. ...-+.++..|+.++-+++..-..+|+.-+..++...+.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 36888888877788888999999998877666654442 112378999999987555554445778888888887788
Q ss_pred CcccchhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHH-HHHHHHHHH
Q 009182 230 QLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEAT-RIEALHWIS 304 (541)
Q Consensus 230 ~l~p~l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~-R~aal~wL~ 304 (541)
.+.|| ...+..++..+.+ +.++||.... ....+.-.-...+.. --+++-=++.+++.+.+... |+..+-++.
T Consensus 507 ~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~-il~~La~~~~~~~s~-i~del~ivIRKQLss~~~~~K~~GIIGav~ 580 (1426)
T PF14631_consen 507 ELQPF-ATFLKGILDYLDNLSLQQIRKLFD-ILCTLAFSDSSSSSS-IQDELHIVIRKQLSSSNPKYKRIGIIGAVM 580 (1426)
T ss_dssp HHHHT-HHHHHGGGGGGGG--HHHHHHHHH-HHHHHHHHHSS---H-HHHHHHHHHHHHHT-SSHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHhcCCHHHHHHHHH-HHHHHhcCCcccchh-hHHHHHHHHHHhhcCCcHHHHHHhHHHHHH
Confidence 88877 5566667777766 6788887633 333332111111111 12345556678887777765 443333333
No 303
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=68.48 E-value=16 Score=30.03 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 212 vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
.|..++-+++.++...|-++-+|+|+++..+-....| ...|+..+.++.+++.+.-.+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 3567788999999999989999999999998888886 667888999999888766543
No 304
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=68.22 E-value=1.7e+02 Score=31.10 Aligned_cols=266 Identities=13% Similarity=0.123 Sum_probs=128.3
Q ss_pred HHHHHHhhcCCCHHHHH-HHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCchhhhc
Q 009182 75 FDALCKLSADSDANVQS-AAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGF 152 (541)
Q Consensus 75 ~~~L~kl~~D~d~~VR~-~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~ 152 (541)
+....+++.+.+.-.-+ ++..++.+.+--....+....+.+...+.+.++. .+++.++++++++..+..++..-..-.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 55666788888887666 5565555544222222223456677777777776 889999999999998877765432211
Q ss_pred hHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcCCCCCC------hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Q 009182 153 LPDFLDGLFNMLS--DSSHEIRQQADSALWEFLQEIKNSPSVD------YGRMAEILVQRAASP-DEFTRLTAITWINEF 223 (541)
Q Consensus 153 lp~~L~~L~~lL~--D~~~eVR~~a~~~L~~ll~~i~~~~~~~------~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l 223 (541)
.-+-...+...+. -.+-.+.-..+-|+-.+. + +++ .-++|+.+..-.++. .+.|-+-++..+.++
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLt--F----n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLT--F----NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhh--c----CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000111111111 111122222222222111 0 000 012222222222211 122222233333333
Q ss_pred HhhcCc----------CcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC------------C----------
Q 009182 224 VKLGGD----------QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD------------P---------- 271 (541)
Q Consensus 224 ~~~~~~----------~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~------------~---------- 271 (541)
.+-++. -+....++.+..+.. =+++++++++--...-..|.+.+.. .
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~-rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk 348 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEE-RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK 348 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc
Confidence 332210 011123344443332 2456776654322222222211110 0
Q ss_pred CCC-C---------ChHhHHHHHHHhcCCCCHHH-HHHHHHHHHHHHhhChHHHhhhhHHH--HHHHHHhcCCCCHHHHH
Q 009182 272 ADG-F---------DVGPILSIATRQLSSEWEAT-RIEALHWISTLLNRHRTEVLHFLNDI--FDTLLKALSDPSDEVVL 338 (541)
Q Consensus 272 ~~~-~---------~l~~il~~L~~~L~~~~~~~-R~aal~wL~~L~~~~~~~i~~~l~~l--~p~Ll~~L~D~~~~V~~ 338 (541)
++. | +--+++.+|.+.|...+.+. =--|..=++++.+..|.+-. .++++ =..+++.++.++|+||.
T Consensus 349 ~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vry 427 (442)
T KOG2759|consen 349 SEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVRY 427 (442)
T ss_pred ccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHHH
Confidence 000 1 11368899999996554332 22234557888888887753 22332 23788999999999999
Q ss_pred HHHHHHHHHh
Q 009182 339 LVLEVHACIA 348 (541)
Q Consensus 339 ~~~~~L~~i~ 348 (541)
.|+.+..++-
T Consensus 428 ~ALlavQ~lm 437 (442)
T KOG2759|consen 428 HALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 305
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=67.99 E-value=11 Score=32.53 Aligned_cols=40 Identities=33% Similarity=0.321 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhHHHHHH
Q 009182 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVV 359 (541)
Q Consensus 320 ~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f~~~m~ 359 (541)
=.++.|++.|.|++++|+..|.++|-+.+..+.+++.++.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 3577889999999999999999999999976666665543
No 306
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=67.87 E-value=90 Score=35.23 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHhhcC--C---Cch----hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChH
Q 009182 125 VLNPYVRQFLVGWITVLDSV--P---DID----MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG 195 (541)
Q Consensus 125 d~~~~vR~~a~~~l~~L~~~--~---~~~----l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~ 195 (541)
.++...|+.++++++.+.-. | +.+ --.|+..+.+-+..-.++.+..+|=.+.+.+.+..+-++ ...-+
T Consensus 207 ~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~---w~l~~ 283 (993)
T COG5234 207 QENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLP---WNLAE 283 (993)
T ss_pred ccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcc---cccHH
Confidence 45678899999988876432 1 122 234555555555555566788899888777766665554 23334
Q ss_pred HHHH---HHHHhc-----CC------CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCCh--------hH
Q 009182 196 RMAE---ILVQRA-----AS------PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE--------KI 253 (541)
Q Consensus 196 ~ii~---~Ll~~~-----~~------~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~--------~i 253 (541)
++++ .+.+++ +. .++.+-..++-.++ ++.+++.+...-+ +.|.+.+.++++.. .|
T Consensus 284 sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~I 360 (993)
T COG5234 284 SFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSI 360 (993)
T ss_pred HHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeecccee
Confidence 4444 333321 11 12333333332222 3444454432211 66788888888542 34
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChHh-HHHHHHH-hcCCCCHHHHHHHHHHHHHHHh
Q 009182 254 RVVARETNEELRAIKADPADGFDVGP-ILSIATR-QLSSEWEATRIEALHWISTLLN 308 (541)
Q Consensus 254 R~~A~~~~~~L~~~i~~~~~~~~l~~-il~~L~~-~L~~~~~~~R~aal~wL~~L~~ 308 (541)
|+.+.=..-.+.+.- +++..-.++. +...+.+ .+.+++...|.+|.-++..+..
T Consensus 361 Rdss~f~vWs~~r~~-S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iG 416 (993)
T COG5234 361 RDSSCFFVWSFYRCY-SKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIG 416 (993)
T ss_pred ecccceeeeeeeecc-ccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhc
Confidence 543321111111110 0000001222 2233333 5677777778777766654433
No 307
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.33 E-value=2.6e+02 Score=32.91 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=54.4
Q ss_pred hhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHH
Q 009182 20 ADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLL 96 (541)
Q Consensus 20 ~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L 96 (541)
.+....+...+...+++++.+...+.++||.+-.+-..-+-..|....-...--+...+..+.+|+.+..++-. +.+
T Consensus 266 ~~W~~aT~~qL~~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l 343 (1014)
T KOG4524|consen 266 TSWVTATSGQLNIALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLL 343 (1014)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHH
Confidence 34556677888888899988889999999997665544444444333333444567788889999888888766 444
No 308
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=67.20 E-value=71 Score=30.40 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 129 ~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
..-..++..++.+-...+....+++..++..+-++-.+++.+.|+++..+++..++.+|
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 33444444444444444434457778888888888888888999999999999999887
No 309
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.96 E-value=50 Score=28.09 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=53.5
Q ss_pred ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHH--HHHHHHH----hc--CCCCHHHHHHHHHHHHHH
Q 009182 276 DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND--IFDTLLK----AL--SDPSDEVVLLVLEVHACI 347 (541)
Q Consensus 276 ~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~--l~p~Ll~----~L--~D~~~~V~~~~~~~L~~i 347 (541)
....++..+.+.+.+.+|.+...||..+-.+..+|++.+...+.. +.-.+++ .. .|.+..||.++.+++...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999887654322 2222322 11 245778999998887654
No 310
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=66.93 E-value=1.9e+02 Score=31.29 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhc------CCCHHHHHHHHHHHHHh
Q 009182 69 IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN------VLNPYVRQFLVGWITVL 141 (541)
Q Consensus 69 ~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~------d~~~~vR~~a~~~l~~L 141 (541)
..++.++..||...+-. +..+.+ ..+..+++... +. ..+..+.+.+. .++..+-.+|+..++.+
T Consensus 213 ~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~---g~----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 213 ESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL---GH----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRML 283 (464)
T ss_pred HHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc---HH----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHH
Confidence 44567788888875544 556666 67777766322 12 22455555552 24556667888888876
Q ss_pred hcCCCchhh---hch-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 142 DSVPDIDML---GFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 142 ~~~~~~~l~---~~l-p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
.-..+.+-. ++- +.+++++.+.+.-.++-|-.+....+..++
T Consensus 284 l~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 284 LWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 544322211 122 246777777776444434334444444444
No 311
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.84 E-value=2.2e+02 Score=31.92 Aligned_cols=267 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc-----------------------------hhcHhhhHHHHHHHhc
Q 009182 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-----------------------------QFSIEEFIPLLRERMN 124 (541)
Q Consensus 75 ~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~-----------------------------~~~l~~~iP~L~e~l~ 124 (541)
+..++..+.+..+.+++-+ -.|-.+.+||.. + -..-..++..+.....
T Consensus 212 L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP--~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK 289 (704)
T KOG2153|consen 212 LKELFEMLDSQNPKAKKLALLSLLAVFKDIIP--GYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVK 289 (704)
T ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHhhcc--cceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CC---CHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 009182 125 VL---NPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEI 200 (541)
Q Consensus 125 d~---~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~ 200 (541)
+. .|..-..+..+++......... ...|...++..+..+++|+...++..+++++..+.
T Consensus 290 ~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf----------------- 352 (704)
T KOG2153|consen 290 DLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLF----------------- 352 (704)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh-----------------
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC----------
Q 009182 201 LVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD---------- 270 (541)
Q Consensus 201 Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~---------- 270 (541)
.++..-.+...++.|+..+.+ ..-.++.|.++..++..=.+.+.........-...-.+....
T Consensus 353 ----~~D~~g~~sl~~Vr~i~~llK---~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~R 425 (704)
T KOG2153|consen 353 ----ENDNGGSGSLAIVRIINSLLK---TRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKER 425 (704)
T ss_pred ----cCCCccchhHHHHHHHHHHhh---hhcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHH
Q ss_pred ---------------------------------------------------------------CCCCCCh-HhHHHHHHH
Q 009182 271 ---------------------------------------------------------------PADGFDV-GPILSIATR 286 (541)
Q Consensus 271 ---------------------------------------------------------------~~~~~~l-~~il~~L~~ 286 (541)
.-..+++ +.++.++.+
T Consensus 426 K~kKe~~ki~rE~reaea~e~aeek~k~~sEiLkiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~~dll~vlk~ 505 (704)
T KOG2153|consen 426 KRKKERNKIEREMREAEAEESAEEKMKKQSEILKIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFLGDLLKVLKE 505 (704)
T ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHhhhHHHHHHH
Q ss_pred hcCCC--CHHHHHHHHHHHHHHHhhChH----HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----cchhhHHH
Q 009182 287 QLSSE--WEATRIEALHWISTLLNRHRT----EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQ 356 (541)
Q Consensus 287 ~L~~~--~~~~R~aal~wL~~L~~~~~~----~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~----~~~~~f~~ 356 (541)
.+.+. ....+..+++....+..+.+. +...+.+.++..+...-.+++.+-..+.++++.-.- .....-..
T Consensus 506 ll~d~~~~~re~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~~v~~~~~ 585 (704)
T KOG2153|consen 506 LLEDIELSYREALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRKPVVNVIT 585 (704)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhhhHHHHHH
Q ss_pred HHHHHHHhccc
Q 009182 357 LVVFLVHNFRV 367 (541)
Q Consensus 357 ~m~~LL~~~~~ 367 (541)
+|..|+..+..
T Consensus 586 ~~~~Ll~~~~h 596 (704)
T KOG2153|consen 586 KMERLLKCSLH 596 (704)
T ss_pred HHHHHHHHHHH
No 312
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=66.43 E-value=1.8e+02 Score=30.65 Aligned_cols=83 Identities=11% Similarity=0.150 Sum_probs=42.3
Q ss_pred chhhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh
Q 009182 234 YYADILGAILPCIS--DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (541)
Q Consensus 234 ~l~~llp~ll~~l~--d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~ 311 (541)
.+.-++|.+++++- ++++.+|..|.+....+.+.....+++..=+++-+++....++-....-......+..++...|
T Consensus 253 ~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p 332 (373)
T PF14911_consen 253 LLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDP 332 (373)
T ss_pred HHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCH
Confidence 45667777777554 5578889998888777765544222211111222222211111111112234556666777776
Q ss_pred HHHhh
Q 009182 312 TEVLH 316 (541)
Q Consensus 312 ~~i~~ 316 (541)
+-+.+
T Consensus 333 ~lV~~ 337 (373)
T PF14911_consen 333 QLVIS 337 (373)
T ss_pred HHHHH
Confidence 65543
No 313
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=65.81 E-value=93 Score=30.90 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 281 LSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 281 l~~L~~~L~~~-~~~~R~aal~wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
.|.|.-.-+.. .+..|.+++..+|++.+...+++..|+ .+++|..++.+.-.++..+..+.-.+.+|-
T Consensus 97 yPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 97 YPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred hhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34443333332 345799999999999998888877764 468999999998777766667777777766
No 314
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=65.79 E-value=96 Score=32.55 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=79.8
Q ss_pred hhhchHHHHHHHHHHcC--CC--CHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH-HHH
Q 009182 149 MLGFLPDFLDGLFNMLS--DS--SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWI-NEF 223 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL~--D~--~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL-~~l 223 (541)
+-.++|-+++|+..+-- |+ +.-+|...++-+..|+..-. ....-.+- ....+....+.+.+..++.-+ ..+
T Consensus 141 i~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~---~~~~~~l~-~~~~~~~~~~~~l~~~il~~i~~~f 216 (373)
T PF14911_consen 141 IRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASP---SKLVARLS-TLLSAFTPRNEELRKFILQVIRSNF 216 (373)
T ss_pred HHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCC---cccccccc-ccccchhhhhhHHHHHHHHHHHHHH
Confidence 33678888888864333 33 34456666666666663322 11111111 223333344667777777544 456
Q ss_pred HhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc--CCCCHHHHHHHHH
Q 009182 224 VKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL--SSEWEATRIEALH 301 (541)
Q Consensus 224 ~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L--~~~~~~~R~aal~ 301 (541)
.+..|....|++..++..+...+.... | ...+... ..++.++|.+.+++ -++...+|.-|..
T Consensus 217 l~~~~~~p~p~l~~vL~fl~~Ll~~~~---~----~~~~~~~---------~~~~~~lp~lL~c~~~v~e~~~~k~~a~e 280 (373)
T PF14911_consen 217 LEFKGSAPPPRLASVLAFLQQLLKRLQ---R----QNENQIL---------TLLRLVLPSLLECLMLVNEEPQVKKLATE 280 (373)
T ss_pred hcCCCCCCCCcHHHHHHHHHHHHHhcC---c----ccchhHH---------HHHHHhhHHHHHHHhhcCCCcchhHHHHH
Confidence 777777777888888887777775521 0 0000110 01244555555544 2446668888888
Q ss_pred HHHHHHhhCh
Q 009182 302 WISTLLNRHR 311 (541)
Q Consensus 302 wL~~L~~~~~ 311 (541)
.+..+.+.|.
T Consensus 281 ~l~~mv~~~~ 290 (373)
T PF14911_consen 281 LLQYMVESCQ 290 (373)
T ss_pred HHHHHHHccc
Confidence 8887777764
No 315
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=65.46 E-value=18 Score=30.43 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=37.6
Q ss_pred CchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 146 DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 146 ~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
+..+.+++|.++..+..-++.-.++||.-+.+.|+-+++..+
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p 43 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAP 43 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCC
Confidence 456789999999999999999999999999999999987665
No 316
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=64.66 E-value=2e+02 Score=30.75 Aligned_cols=112 Identities=10% Similarity=0.042 Sum_probs=67.2
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCh--HhHHHHHHHhc-----CCCCHHHHHHHHHHHHHHH
Q 009182 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV--GPILSIATRQL-----SSEWEATRIEALHWISTLL 307 (541)
Q Consensus 235 l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l--~~il~~L~~~L-----~~~~~~~R~aal~wL~~L~ 307 (541)
-|+++..+..++..++.+...++.-+.|.+.+ .++....+ .++++.|.+.+ -+.+....-+++.++..+.
T Consensus 313 ~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR---~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSDDSNLITMGSLAIGNFAR---RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred CcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 36788888888877666665555444444432 22111111 34555555554 2456666777888887766
Q ss_pred hhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 308 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 308 ~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
--.+.+-.-.-.++..+++..++-.+|-|..+-+-++..+..
T Consensus 390 IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 390 IPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred ccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 554443221223566678888888888888877777766653
No 317
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=64.35 E-value=17 Score=30.67 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC-cccchhhHHHHHhhhcCCC
Q 009182 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVPYYADILGAILPCISDK 249 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~-l~p~l~~llp~ll~~l~d~ 249 (541)
++++.++.++...+.+-.++||.-++..+.-+.+.+|+. +..+..++++..+..++.+
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 456778888888888999999999999999999999888 6678889999999998876
No 318
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=63.09 E-value=42 Score=29.30 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=54.3
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC------C------CCHHHHHHHHHHH
Q 009182 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS------D------PSDEVVLLVLEVH 344 (541)
Q Consensus 277 l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~------D------~~~~V~~~~~~~L 344 (541)
...++..|.+.|++.+..++..||+.|..+.+..++.+...+..-... ++.+. | +...||..|-+++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~-Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQ-IRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHH-HHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 568999999999998888999999999999999988776554444332 23221 3 2457888988888
Q ss_pred HHHhc
Q 009182 345 ACIAK 349 (541)
Q Consensus 345 ~~i~~ 349 (541)
+.|.+
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 87764
No 319
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.40 E-value=3.5e+02 Score=32.37 Aligned_cols=138 Identities=13% Similarity=0.054 Sum_probs=90.1
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-------hhhHHHHH
Q 009182 286 RQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-------LQHFRQLV 358 (541)
Q Consensus 286 ~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~-------~~~f~~~m 358 (541)
...++-....|..|+.-||.-....|+-+. .+.++.++==+|+|.+..||..++++|..+.+. +.++..|=
T Consensus 294 HRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl--~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIWIKSYPEIFL--SDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred eecccCchHHHHHHHHHHHHHHHhccHHHh--cchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 334567788999999999999999998885 356777777789999999999999999998853 23555666
Q ss_pred HHHHHhcccc-chhhhhhHH--HHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHh
Q 009182 359 VFLVHNFRVD-NSLLEKRGA--LIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSE 425 (541)
Q Consensus 359 ~~LL~~~~~~-~~ll~~r~~--~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~e 425 (541)
..+++|-..| ..-++.-+- .+-+.-|..++.+.|....+-+.........+..+.-......-.++.
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~ 441 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANS 441 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccch
Confidence 6666666222 221111111 122222556677788887777777766654444444344444444443
No 320
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=61.37 E-value=1.3e+02 Score=28.02 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH-hhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009182 297 IEALHWISTLL-NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (541)
Q Consensus 297 ~aal~wL~~L~-~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~ 346 (541)
..|...+.-|. ....+-+.|+++.++|...+.|.+|.+ ....+|+|+-
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~--~d~~~W~LAl 108 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEE--VDVEDWVLAL 108 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchh--ccHHHHHHHH
Confidence 34666666665 556667889999999999999999964 3334455443
No 321
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=60.72 E-value=16 Score=30.05 Aligned_cols=56 Identities=23% Similarity=0.260 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 009182 130 VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 130 vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i 186 (541)
.|-.++-.++.+....+-++-+++|.++..|.+..+| ...|+..+.+++.+|-+.-
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 4666777777777776667778999999999999997 5678999999999997653
No 322
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=60.65 E-value=2.1e+02 Score=29.48 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhChHHHh-hh--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cc--------hhhHH-HHHHH
Q 009182 294 ATRIEALHWISTLLNRHRTEVL-HF--LNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KD--------LQHFR-QLVVF 360 (541)
Q Consensus 294 ~~R~aal~wL~~L~~~~~~~i~-~~--l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~-~~--------~~~f~-~~m~~ 360 (541)
.+|.+.++.+..+....+..+. .. ...++..+.+.|.+.+++++..+++++..-. .+ -..|. .++..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 6888888877777766655432 22 2345889999999988999999999888644 21 23443 47777
Q ss_pred HHHhccccch----hhhhhHHHHHHHhhc
Q 009182 361 LVHNFRVDNS----LLEKRGALIIRRLCV 385 (541)
Q Consensus 361 LL~~~~~~~~----ll~~r~~~iir~Lc~ 385 (541)
|...+..+.. -+.+.+--.+..+|.
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 7777765544 333344445555554
No 323
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=60.10 E-value=58 Score=40.44 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=79.7
Q ss_pred CcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009182 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (541)
Q Consensus 228 ~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~ 307 (541)
+..+.+|+|.++...-.+|...++.+++-+......+...+.. ..-.+|+..|+.+..+.+...--+|+..|..|+
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~ 501 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELA 501 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999998887776666443311 112579999988886656666679999999999
Q ss_pred hhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 308 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 308 ~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
...|+.+.+|...+ ..++..+.+=++.-......++..++
T Consensus 502 ~~~~~~l~~fa~~l-~giLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 502 EKNPSELQPFATFL-KGILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HH-HHHHHHTHHHH-HGGGGGGGG--HHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99999998874433 33445555444444445566666666
No 324
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=59.47 E-value=24 Score=33.18 Aligned_cols=77 Identities=25% Similarity=0.379 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchh
Q 009182 71 FNQIFDALCKLSADSDAN-VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d~~-VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l 149 (541)
.++.+|.+.+.++=.++. |+++-..+..= ...+...-+..|...+. ++.||++|++++. +.++.++
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W--------~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~---~~~d~~l 108 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKW--------APLDPEDALELLSPKFP--DPFVRAYAVERLE---SASDEEL 108 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcC--------CCCCHHHHHHHhCccCC--CHHHHHHHHHHHH---hCCHHHH
Confidence 356677666666655554 44433432211 11223333555554443 7999999998875 4677788
Q ss_pred hhchHHHHHHH
Q 009182 150 LGFLPDFLDGL 160 (541)
Q Consensus 150 ~~~lp~~L~~L 160 (541)
..|+|.+++.|
T Consensus 109 ~~yLpQLVQaL 119 (184)
T smart00145 109 LLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHHH
Confidence 89999888743
No 325
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=59.44 E-value=2.3e+02 Score=29.68 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---cchhhHHHHHHHHHHhccccc
Q 009182 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNFRVDN 369 (541)
Q Consensus 293 ~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~---~~~~~f~~~m~~LL~~~~~~~ 369 (541)
-.+=...+..+..+...+|+.|..+.+.-+|.++..+-+....+|.++..++...+ ..++.+.+.+...++.-..+.
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 33445567788899999999999999999999999999999999998777766665 344555555555554333322
Q ss_pred hhhhhhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcH-hH-HHHHHHHh---hccCCcchhH
Q 009182 370 SLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSS-EL-SELRDLLK---KSLVNPAGKD 444 (541)
Q Consensus 370 ~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~-el-~~~R~~L~---~~~~~~~~~~ 444 (541)
+ -+.++..+| -+.+...++..++-.+=..+...+-... +- ..+..-|+ .|..+. +..
T Consensus 228 ~----~~~~~~~~L-------------~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~ 289 (372)
T PF12231_consen 228 K----LIQLYCERL-------------KEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQ 289 (372)
T ss_pred c----HHHHHHHHH-------------HHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHH
Confidence 2 233444444 3333332333333222222222221110 00 11112111 122332 223
Q ss_pred HHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHHHhhhhhhhHhhhhhcCCCC---ChhH
Q 009182 445 LFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQVLKLRT---EDYL 521 (541)
Q Consensus 445 lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~~~l~~id~lvql~esp~f~~lRl~ll~~~~---~~~l 521 (541)
.=..-+.+| + .++. +...+.. .-++.++|+=.|.-..+|.......+ --++
T Consensus 290 ~k~~A~~aW--~------------------~liy-~~~~~~~-----~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~l 343 (372)
T PF12231_consen 290 VKIQAFKAW--R------------------RLIY-ASNPNEL-----TSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYL 343 (372)
T ss_pred HHHHHHHHH--H------------------HHHH-HhcCCcc-----ccHHHHHHHHHHHHHHhCccccccccHHHHHHH
Confidence 444556667 2 2222 3333333 35899999999998888887776533 4467
Q ss_pred HHHHHHHH
Q 009182 522 FALLFGLT 529 (541)
Q Consensus 522 ~~~l~gll 529 (541)
+.+++|++
T Consensus 344 l~~l~~ll 351 (372)
T PF12231_consen 344 LYSLCNLL 351 (372)
T ss_pred HHHHhchH
Confidence 77777665
No 326
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=58.66 E-value=3e+02 Score=30.73 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=78.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC--CC
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS--VD 193 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~--~~ 193 (541)
...+..++.|.++.+|..++..++.=.+..|.-+.... ++...=-+|+|.+..||..+.+.+.-|......... ..
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44567888999999999988887754433332111111 122222478999999999999998888765432110 12
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHH
Q 009182 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 254 (541)
Q Consensus 194 ~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR 254 (541)
++.+...+++.+.....-||..++.-+.++...+-- -..-+-.+..+|-|..|+=|
T Consensus 355 ~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L-----~~SeIlIvsscmlDi~pd~r 410 (740)
T COG5537 355 VERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVL-----SSSEILIVSSCMLDIIPDSR 410 (740)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccc-----chhHHHHHHHHHhcCCCcch
Confidence 456666666654433333888887666655443311 12334455666777666533
No 327
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=58.55 E-value=97 Score=30.78 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhcCcCcccchh--hHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 210 EFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 210 ~~vr~~al~wL~~l~~~~~~~l~p~l~--~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
+..|.+++.-|+.+++....+...|+- +++|..+..|.....--|.+|.-..+.+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567999999999999877777776654 7889888888765544455555554443
No 328
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.01 E-value=98 Score=25.34 Aligned_cols=74 Identities=24% Similarity=0.262 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhcCCCH--HHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCC--HHHHHHHHHHHHHhhc
Q 009182 69 IFFNQIFDALCKLSADSDA--NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLN--PYVRQFLVGWITVLDS 143 (541)
Q Consensus 69 ~~~~~i~~~L~kl~~D~d~--~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~--~~vR~~a~~~l~~L~~ 143 (541)
..|+++...|-+.++|..- +||.+| ++...+-+ ..++...--..-|..|-+.-+|+| .++|..+-+.++.|-.
T Consensus 13 e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~--e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis~LE~ 90 (93)
T COG1698 13 EKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN--EGESPAVRAATAISILEEISNDPNMPLHARTLIWNVISQLET 90 (93)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC--CCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence 3457777777777887753 999999 65544432 011111122344677777777766 4677776666665544
Q ss_pred C
Q 009182 144 V 144 (541)
Q Consensus 144 ~ 144 (541)
+
T Consensus 91 i 91 (93)
T COG1698 91 I 91 (93)
T ss_pred c
Confidence 3
No 329
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=56.54 E-value=1.1e+02 Score=27.94 Aligned_cols=76 Identities=22% Similarity=0.161 Sum_probs=55.9
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHH-hcCCCC--HHHHHHHHHHHHHHhcchhhH
Q 009182 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK-ALSDPS--DEVVLLVLEVHACIAKDLQHF 354 (541)
Q Consensus 279 ~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~-~L~D~~--~~V~~~~~~~L~~i~~~~~~f 354 (541)
.+.+.+.+.+.+++..+=..+++.+..+.......+...++.+++.++. .+..+. ...|..+++++.+++++++.+
T Consensus 73 ~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l 151 (168)
T PF12783_consen 73 DLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFL 151 (168)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHH
Confidence 4555666666555566666788888888888888888888888988887 555332 467778999999999765443
No 330
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=56.33 E-value=3.4e+02 Score=30.70 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=53.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCCchhhhchHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHHhcCC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHE--IRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~-~~~~~l~~~lp~~L~~L~~lL~D~~~e--VR~~a~~~L~~ll~~i~~~ 189 (541)
+..+-.|...+..++..+|..++--++..-+ .... +++..|..++.|.+.. |.-.|.-.|+... ...
T Consensus 451 dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e-------~V~~lL~Pi~~d~~~~~ev~~~aslsLG~If---vGs 520 (878)
T KOG2005|consen 451 DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE-------EVLELLSPIMFDTKSPMEVVAFASLSLGMIF---VGS 520 (878)
T ss_pred CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchH-------HHHHHHhHHhcCCCCchhHHHHHHhhcceeE---Eec
Confidence 4457788888888999999998888875433 2333 2233444577776654 5544444433221 222
Q ss_pred CCCCh-HHHHHHHHHhcC--CCCHHHHHHHH
Q 009182 190 PSVDY-GRMAEILVQRAA--SPDEFTRLTAI 217 (541)
Q Consensus 190 ~~~~~-~~ii~~Ll~~~~--~~~~~vr~~al 217 (541)
++-++ ..|+..++++.. ..+...|.-++
T Consensus 521 cn~dvts~ilqtlmekse~El~d~~~RFL~L 551 (878)
T KOG2005|consen 521 CNEDVTSSILQTLMEKSETELEDQWFRFLAL 551 (878)
T ss_pred CChHHHHHHHHHHHHhhhhhhhchHHHHHHH
Confidence 23343 556666666543 23445554443
No 331
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=56.25 E-value=4.3e+02 Score=31.82 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHh-------chh--hhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHH------HhHhhcccchhcHh
Q 009182 50 YYACEALYNIAKVV-------RGD--FIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL------VKDIVTESDQFSIE 113 (541)
Q Consensus 50 ~~A~eaL~~i~k~~-------~~~--~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l------~kdi~~e~~~~~l~ 113 (541)
..+.+|+.|+.+.- +.+ .+++|+-++-.+ ....++.+..-| +.+..+ +.++++.
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~l---r~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~------- 1812 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYL---RCRKHPKLQILALQVILLATANKECVTDLATC------- 1812 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHH---HHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-------
Confidence 45677888876532 222 234443333222 345555667666 444332 2223221
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchh-------hhchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM-------LGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l-------~~~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~ 184 (541)
..+-.|...++ .-|..|+.++..++.+.+.+...- +.|+|+ ++.. +++.+|.++++.++.+..
T Consensus 1813 ~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~-------~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1813 NVLTTLLTLLH-SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILS-------ILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred hHHHHHHHHHh-cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhH-------HHhccCcHHHHHHHHHHHHHhhh
Confidence 12444455554 578999999999999988875321 123333 4443 457789888888887753
No 332
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=56.16 E-value=36 Score=31.58 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCCCH-HHHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh
Q 009182 72 NQIFDALCKLSADSDA-NVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (541)
Q Consensus 72 ~~i~~~L~kl~~D~d~-~VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~ 150 (541)
+..+|.+.+.+.-.++ +|+++-..|.. - ..-+...-+..|...+ .++.||++|++++.. .++.++.
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~----W----~~i~~~~aLeLL~~~f--~d~~VR~yAV~~L~~---~sd~eL~ 104 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKR----W----PKLKPEQALELLDCNF--PDEHVREFAVRCLEK---LSDDELL 104 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHC----C----CCCCHHHHHHHCCCcC--CCHHHHHHHHHHHHh---CCHHHHH
Confidence 4556666666655554 33332233221 1 1112222344444444 459999999999875 5677888
Q ss_pred hchHHHHHH
Q 009182 151 GFLPDFLDG 159 (541)
Q Consensus 151 ~~lp~~L~~ 159 (541)
.|+|.+++.
T Consensus 105 ~yL~QLVQa 113 (171)
T cd00872 105 QYLLQLVQV 113 (171)
T ss_pred HHHHHHHHH
Confidence 999988773
No 333
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=56.08 E-value=43 Score=31.55 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=64.5
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhHhhccc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES 107 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l~kdi~~e~ 107 (541)
++...++..+++...++=.+||..|+.++..+....... .++++ =.+.|.+....+... ..
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~-~~~ip-~~~~L~~i~~~~~~~-----------------~~ 63 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPT-IPHIP-HREELQDIFPSESEA-----------------SL 63 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ccCCC-cHHHHHHHccccccc-----------------cc
Confidence 455667777778778888999999999988877221111 01111 112222222211110 00
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i 186 (541)
....-...-|.+...+.- -.|-..++.|++.-.+..+..+.+.+..+|-.++...
T Consensus 64 ~w~~~~~~F~~l~~LL~~------------------------~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~ 118 (193)
T PF12612_consen 64 NWSSSSEYFPRLVKLLDL------------------------PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL 118 (193)
T ss_pred ccCCHHHHHHHHHHHhcc------------------------HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 001111223333333221 1566678888888888888888888878888887654
No 334
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=55.39 E-value=2.2e+02 Score=28.18 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=49.0
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhhcCcCcccchh--hHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 198 AEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 198 i~~Ll~~~~-~~~~~vr~~al~wL~~l~~~~~~~l~p~l~--~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
-|.+..... .+.+..|.+++.-|+.+++.+.+.+..|+- +++|..++.|......-+.+|.-..+.+
T Consensus 126 YpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 126 YPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred HHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344443333 345678999999999999999888877764 8899999998776666666676666554
No 335
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=55.28 E-value=2.1e+02 Score=27.94 Aligned_cols=175 Identities=14% Similarity=0.188 Sum_probs=105.5
Q ss_pred cCCCChhHHHHHHHHHHHHHHh----hcCCC---CCCC-hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh------
Q 009182 246 ISDKEEKIRVVARETNEELRAI----KADPA---DGFD-VGPILSIATRQLSSEWEATRIEALHWISTLLNRHR------ 311 (541)
Q Consensus 246 l~d~~~~iR~~A~~~~~~L~~~----i~~~~---~~~~-l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~------ 311 (541)
+.|+++.+.+.+..+...+.+. +..+. ..|+ +..+-..+...+.+++..+|.+|++.+..+.....
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 5677777777777777666543 31110 1122 23444556667788888999999998876655431
Q ss_pred ------------------------HHHhhhhHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHh-cchhhHHHHHHHHHHh
Q 009182 312 ------------------------TEVLHFLNDIFDTLLKALSDPS--DEVVLLVLEVHACIA-KDLQHFRQLVVFLVHN 364 (541)
Q Consensus 312 ------------------------~~i~~~l~~l~p~Ll~~L~D~~--~~V~~~~~~~L~~i~-~~~~~f~~~m~~LL~~ 364 (541)
..+..--..++..|+..+.++. +.+...++..|+.|+ ..++|...+++.++..
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSF 161 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 1122224467889999999876 566667888999998 4677888888888876
Q ss_pred cccc----chhhhhhHHHHHHHhhccCChhh-HHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHHH
Q 009182 365 FRVD----NSLLEKRGALIIRRLCVLLDAER-VYRELSTILEGEADLDFACTMVQALNLILLTSSELSEL 429 (541)
Q Consensus 365 ~~~~----~~ll~~r~~~iir~Lc~~l~~e~-i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~~ 429 (541)
-.+. ... .....+|-. |+ +.-.+..++....-.+|...+.+.|+-+-.+..|..+.
T Consensus 162 ~~~~~~~~~~~---~~~~~v~sv------~k~lk~~l~~llk~~~~~~~~~~i~~~L~~lg~~~~e~~~~ 222 (239)
T PF11935_consen 162 NPNLSPMQPPT---LSKLQVKSV------EKTLKIFLLHLLKHPASSPFQGRITQALTDLGASQREIADE 222 (239)
T ss_dssp HHS------TT---CSHHHHHHH------HHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTT--HHHHHHT
T ss_pred CccccccCCcc---chHHHHHHH------HHHHHHHHHHHHCCCCchhhHHHHHHHHHHHccCHHHHHHH
Confidence 6544 111 111112111 33 33344555554444499999999999777777776444
No 336
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 211 to 243 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=54.85 E-value=41 Score=31.47 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=46.9
Q ss_pred chhHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHH-----HhhhhhhhHhhhhhcCC
Q 009182 441 AGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIR-----LLETPIFAYLRLQVLKL 515 (541)
Q Consensus 441 ~~~~lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~~~l~~id~lvq-----l~esp~f~~lRl~ll~~ 515 (541)
++--+..+|+..+ ||...+ ..-+.++.. -+++-....+|| |+.+|....+|.+|-+.
T Consensus 8 Rg~~IIRqLC~~L--~~E~iy---------~~la~iL~~-------~~dl~Fas~mVq~LN~iLLTs~EL~~LR~~Lr~~ 69 (182)
T PF11916_consen 8 RGSFIIRQLCVLL--NAERIY---------RTLASILES-------EEDLEFASMMVQTLNNILLTSPELFDLRKKLRNL 69 (182)
T ss_pred HHHHHHHHHHhhc--CHHHHH---------HHHHHHHcc-------cccHHHHHHHHHHHHHHHcchHHHHHHHHHHhcc
Confidence 3567777788877 754333 222222222 344446777888 78999999999999865
Q ss_pred CC---ChhHHHHHHHH
Q 009182 516 RT---EDYLFALLFGL 528 (541)
Q Consensus 516 ~~---~~~l~~~l~gl 528 (541)
+. ...|+.+||.-
T Consensus 70 ~~~~~~~~lF~~Ly~s 85 (182)
T PF11916_consen 70 DTDEEGQSLFSTLYRS 85 (182)
T ss_pred ccchHHhHHHHHHHHH
Confidence 54 45899999864
No 337
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=54.50 E-value=52 Score=27.06 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHh
Q 009182 290 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD--EVVLLVLEVHACIA 348 (541)
Q Consensus 290 ~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~--~V~~~~~~~L~~i~ 348 (541)
+++|..|.-|.+.+..+..+.....-..-+.+..++.+.+.|++. ..+--++..|..++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999998766555566889999999999853 44557777777765
No 338
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=54.20 E-value=49 Score=30.02 Aligned_cols=40 Identities=30% Similarity=0.567 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHH
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L 160 (541)
+..|...+ .++.||++|++++.. .++.++..|+|.+.+.|
T Consensus 75 L~LL~~~~--~~~~vr~yAv~~L~~---~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 75 LELLSPKY--PDPVVRQYAVRVLES---ASDDELLLYLPQLVQAL 114 (152)
T ss_pred HHHcCCcC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 44444333 459999999998865 66778889999887743
No 339
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.98 E-value=3.5e+02 Score=33.70 Aligned_cols=220 Identities=17% Similarity=0.260 Sum_probs=116.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc---chh
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES---DQF 110 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~---~~~ 110 (541)
|-....-...+.+||..+.++... .+-.-|..+|..+.....|...++-+.+ +.+.....+..... ...
T Consensus 1040 Pfe~im~~s~s~~Irelv~rC~~~-------nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~ 1112 (1514)
T KOG0929|consen 1040 PFEHIMKRSSSAEIRELVVRCISS-------NIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMD 1112 (1514)
T ss_pred cchHHhhccCcchhHHHHHhhhhh-------hhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH
Confidence 444555567788899877766652 2334478888888877778877776666 55554444433221 112
Q ss_pred cHhhhHHHHHHHhcC------CCHHHHH---HHHHHHHH--hhcCC-------CchhhhchHHHHHHHHHHcCCCCHHHH
Q 009182 111 SIEEFIPLLRERMNV------LNPYVRQ---FLVGWITV--LDSVP-------DIDMLGFLPDFLDGLFNMLSDSSHEIR 172 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d------~~~~vR~---~a~~~l~~--L~~~~-------~~~l~~~lp~~L~~L~~lL~D~~~eVR 172 (541)
++..-++.+.+.... ..+.+|. -+-+.-.. ..... ......|+|.++. +-....|...+||
T Consensus 1113 sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~-ls~i~~~~~~~vr 1191 (1514)
T KOG0929|consen 1113 SFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQ-LSKIINDYRLEVR 1191 (1514)
T ss_pred HHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhh-hhHHhhccHHHHH
Confidence 233345555555542 2223321 11111111 01111 1123357776654 3344458999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhc---C-CCCHHHHHHHHHHHHHH--------Hhh---cCcCcccchh
Q 009182 173 QQADSALWEFLQEIKNSPSVD-YGRMAEILVQRA---A-SPDEFTRLTAITWINEF--------VKL---GGDQLVPYYA 236 (541)
Q Consensus 173 ~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~---~-~~~~~vr~~al~wL~~l--------~~~---~~~~l~p~l~ 236 (541)
..+.+.+-..+.+-+.....+ .+.+..++..-. + +.+...+. .|+.+- +.+ .-+.+.+-+|
T Consensus 1192 ~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~---eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~ 1268 (1514)
T KOG0929|consen 1192 KRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKD---EWLSTTCNHALQALVDLFTQFFKQLNNLLP 1268 (1514)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777544333 355555332221 1 11222221 144432 222 1122334577
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 237 DILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 237 ~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
+++..+..|..-++..+-.....|...+.
T Consensus 1269 ~~~~ll~~ci~~~n~~la~~g~~cl~~l~ 1297 (1514)
T KOG0929|consen 1269 KVLGLLVGCIKQDNQQLARIGTSCLLQLV 1297 (1514)
T ss_pred HHHHHHHHHhcCcchhhHHhHHHHHHHHH
Confidence 77777777777777666555555555543
No 340
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.21 E-value=1.7e+02 Score=25.80 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=58.4
Q ss_pred HHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch--hhHHHHHhhhcCCC--ChhHHHHH
Q 009182 182 FLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDK--EEKIRVVA 257 (541)
Q Consensus 182 ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l--~~llp~ll~~l~d~--~~~iR~~A 257 (541)
++..+... ...-...+..+.++++++++.++.-|+.-+..+++-+|..+...+ .+++..+...++++ .+.||+.+
T Consensus 24 icD~i~~~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~ki 102 (133)
T smart00288 24 ICDLINST-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRI 102 (133)
T ss_pred HHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44444332 233566778888889999999999999999999998887664332 24555555555553 34477766
Q ss_pred HHHHHHHHHhhcC
Q 009182 258 RETNEELRAIKAD 270 (541)
Q Consensus 258 ~~~~~~L~~~i~~ 270 (541)
.+....-...+.+
T Consensus 103 l~li~~W~~~f~~ 115 (133)
T smart00288 103 LELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcC
Confidence 6666665555544
No 341
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=52.14 E-value=61 Score=36.94 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=54.6
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 009182 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALS-DPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 278 ~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~-~l~p~Ll~~L~-D~~~~V~~~~~~~L~~i~ 348 (541)
..++..+-+.+.+ ..+|..++..|+.+....|.-+-...+ .+|+.|+++|. |.+..|+..++-+|..+-
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 4567777777765 468999999999999999887654444 68999999987 778888888888777765
No 342
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=51.45 E-value=2.6e+02 Score=29.50 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCCC
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPS 191 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~~~ 191 (541)
|..+..|+++.+|+|-..+++.+..+...+|.-+..-+ -+|-..|.++++| ..+.|++.....+.+..+++++.++
T Consensus 47 lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 47 LKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcc
Confidence 77788999999999999999999998888876543222 2455566667774 5688888888888888888876543
No 343
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=51.43 E-value=2e+02 Score=26.57 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=69.3
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
...+.|.+.+. +..|+.+--..+..+-.-.. ..-|.+ +.+..+..+++.=+|+.+...+..+...
T Consensus 71 ~~~~~~~~~i~---~~~~W~~~D~~~~~~~~~~~-------~~~~~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~---- 135 (197)
T cd06561 71 EDLERFEPWIE---YIDNWDLVDSLCANLLGKLL-------YAEPEL-DLLEEWAKSENEWVRRAAIVLLLRLIKK---- 135 (197)
T ss_pred HHHHHHHHHHc---CCchHHHHHHHHHHHHHHHH-------hcCcch-HHHHHHHhCCcHHHHHHHHHHHHHHHHh----
Confidence 34455555554 33566655554444322111 111222 5666799999999999887776665543
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch
Q 009182 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l 235 (541)
..+.+.+++++-....|+++.||.+.-.++.++....++...+|+
T Consensus 136 -~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 136 -ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred -cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 246888888888888888899998888888877665544444443
No 344
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=50.88 E-value=5.4e+02 Score=31.34 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-CcCcc-cchhhHHHHHhhhcCCC
Q 009182 172 RQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLV-PYYADILGAILPCISDK 249 (541)
Q Consensus 172 R~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~-~~~l~-p~l~~llp~ll~~l~d~ 249 (541)
...+..+|..++.. -.++++..+.+|..+++.+.......+ +++. ..+.. -...+++...+-.++++
T Consensus 487 ~~lgr~AL~nLL~~--------N~dLl~~~IdrCYss~~~va~gYF~vl---aev~~~~~~~~~~~~~LL~L~Lfklg~~ 555 (1120)
T PF14228_consen 487 HSLGRRALKNLLEH--------NPDLLDWVIDRCYSSSPRVAEGYFTVL---AEVFSEREYPPCPFWELLNLVLFKLGDE 555 (1120)
T ss_pred HHHHHHHHHHHHHh--------hHHHHHHHHHHhcCCChhHHHHHHHHH---HHHHHcCCCCCCCHHHhHHHHHHhhcCC
Confidence 34455667767642 124788889999988877664444343 4432 12221 13569999999999999
Q ss_pred ChhHHHHHHHHHHHHH
Q 009182 250 EEKIRVVARETNEELR 265 (541)
Q Consensus 250 ~~~iR~~A~~~~~~L~ 265 (541)
+.+||..|.+.+..+-
T Consensus 556 ~~eIR~~A~qLL~~Le 571 (1120)
T PF14228_consen 556 SSEIRSKAMQLLRALE 571 (1120)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999988776553
No 345
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=50.73 E-value=4.5e+02 Score=30.34 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-----------hhhHHHHHHHH
Q 009182 295 TRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----------LQHFRQLVVFL 361 (541)
Q Consensus 295 ~R~aal~wL~~L~~~~~~~i~~~l~--~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~-----------~~~f~~~m~~L 361 (541)
.+....+.++.+.+..|+.+...+. +..-.+..++-.|.+++...+..++..+.+. +.+|+..+.++
T Consensus 497 ~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai 576 (727)
T PF12726_consen 497 ITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAI 576 (727)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHH
Confidence 3444556677777777777655444 4566788888899999999999999999832 24555555544
Q ss_pred HHhcc---------ccchhhhhhHHHHHHHhhccCCh
Q 009182 362 VHNFR---------VDNSLLEKRGALIIRRLCVLLDA 389 (541)
Q Consensus 362 L~~~~---------~~~~ll~~r~~~iir~Lc~~l~~ 389 (541)
-..++ ..++.+. -+..||+-||...++
T Consensus 577 ~~~l~~~~~~~~~~p~pr~vr-~~~DIi~~Lcdp~~G 612 (727)
T PF12726_consen 577 NWSLRQLTKLKFFEPCPRMVR-CLMDIIEVLCDPVSG 612 (727)
T ss_pred HHHHHHHHhhhhhcchHHHHH-HHHHHHHHHcCCCCC
Confidence 43332 2244443 346677777777654
No 346
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=49.23 E-value=2.4e+02 Score=26.85 Aligned_cols=169 Identities=18% Similarity=0.144 Sum_probs=96.1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHH
Q 009182 39 NSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIP 117 (541)
Q Consensus 39 ~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP 117 (541)
.++|=+.+.+|..|-.-+... ..... .+...-+..+.+++.-+.|-.| ..+...-+ -.++ .-++
T Consensus 19 ~f~Gv~~P~~R~lak~~~~~~----~~~~~---~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~-~~~~-------~~~~ 83 (208)
T cd07064 19 PFYGIKTPERRALSKPFLKES----KLPDK---EELWELVLELWQQPEREYQYVAIDLLRKYKK-FLTP-------EDLP 83 (208)
T ss_pred ccCCCChHHHHHHHHHHHHHc----CCCcH---HHHHHHHHHHHcchHHHHHHHHHHHHHHHHh-cCCH-------HHHH
Confidence 466777777787765433221 11111 1222323345677776777777 43333211 1111 1145
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHH
Q 009182 118 LLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR 196 (541)
Q Consensus 118 ~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ 196 (541)
.+...+.+ .+.++=-..+.-+ ...+...-|.+.+.+.++..|.+.=.|+.|.-+.-.+. + ..+.+.
T Consensus 84 ~~~~~l~~~~~Wd~vD~~~~~i-------~g~~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~---~---~~~~~~ 150 (208)
T cd07064 84 LLEELITTKSWWDTVDSLAKVV-------GGILLADYPEFEPVMDEWSTDENFWLRRTAILHQLKYK---E---KTDTDL 150 (208)
T ss_pred HHHHHHcCCchHHHHHHHHHHH-------hHHHHhCChhHHHHHHHHHcCCcHHHHHHHHHHHHHHH---H---ccCHHH
Confidence 55554444 3444322222211 11223445566677888999999988888865433332 2 346778
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch
Q 009182 197 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (541)
Q Consensus 197 ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l 235 (541)
+..++.....|++..|+.+.-.++.++....++.+.+|+
T Consensus 151 l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 151 LFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 888888889999999998888888888777666655554
No 347
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=48.77 E-value=1.1e+02 Score=27.92 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc--cchhcHhhhHHHH
Q 009182 43 DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE--SDQFSIEEFIPLL 119 (541)
Q Consensus 43 D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e--~~~~~l~~~iP~L 119 (541)
...+.+|..|.-++..+.+..+......+.+.+..+ +.+++.+-.-.| .++..++. ++.+ +.-+.-+.+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~---~~~~~~d~~i~~~~~l~~lfp-~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESL---LDEGEMDSLIIAFSALTALFP-GPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHCCHHHHHHHHHHHHCT-TTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HccccchhHHHHHHHHHHHhC-CCHHHHHHHHhhhhHHHHH
Confidence 356779999988877765544444433333333333 343333323333 55544433 1111 1123345667778
Q ss_pred HHHhc--CCCHHHHHHHHHHHHHhhcCCCchhhh-chHHHHHHHHHHcCCC-CHH-HHHHHHHH
Q 009182 120 RERMN--VLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDS-SHE-IRQQADSA 178 (541)
Q Consensus 120 ~e~l~--d~~~~vR~~a~~~l~~L~~~~~~~l~~-~lp~~L~~L~~lL~D~-~~e-VR~~a~~~ 178 (541)
...+. .++..+...+++.+..=+. +.+.-. ......+-|-+..+.+ +.. +|..|.-.
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 77777 6788888888888764322 222222 2233344444566443 333 67766444
No 348
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=47.94 E-value=2.1e+02 Score=25.65 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc--
Q 009182 67 FIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-- 143 (541)
Q Consensus 67 ~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~-- 143 (541)
.+...+++.+.+..+++++|++|++.| +++-.- +...+...-..|...+.| ...|.-+..+...-.+
T Consensus 11 ~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~--------k~~~l~pY~d~L~~Lldd--~~frdeL~~f~~~~~~~~ 80 (141)
T PF07539_consen 11 SLYRSDELYDALLRLLSSRDPEVQKLALDCLLTW--------KDPYLTPYKDNLENLLDD--KTFRDELTTFNLSDESSV 80 (141)
T ss_pred HHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------CcHHHHhHHHHHHHHcCc--chHHHHHHhhcccCCcCC
Confidence 334456888888899999999999998 553221 112344444555555544 4566666665532221
Q ss_pred CCCchhhhchHHHHHHHHHHc
Q 009182 144 VPDIDMLGFLPDFLDGLFNML 164 (541)
Q Consensus 144 ~~~~~l~~~lp~~L~~L~~lL 164 (541)
+.+.+=...+|-++.-|+..+
T Consensus 81 I~~ehR~~l~pvvlRILygk~ 101 (141)
T PF07539_consen 81 IEEEHRPELMPVVLRILYGKM 101 (141)
T ss_pred CCHHHHhHHHHHHHHHHHHHH
Confidence 334444456666677666444
No 349
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=47.40 E-value=20 Score=33.26 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC--ChhHHHHHHHHHHHHHHhhcCCCC----CCChHhHHHHHHH
Q 009182 213 RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKADPAD----GFDVGPILSIATR 286 (541)
Q Consensus 213 r~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~--~~~iR~~A~~~~~~L~~~i~~~~~----~~~l~~il~~L~~ 286 (541)
|...+.|+.+|.+.+|-.. +-+++..+...-... +.++...+.+|...++ ++.. .+..+..++.+..
T Consensus 93 rt~~~~Wv~~Fl~~~G~~~---L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~----n~~~G~~~v~~~~~~v~~i~~ 165 (187)
T PF06371_consen 93 RTNPISWVQEFLELGGLEA---LLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM----NTKYGLEAVLSHPDSVNLIAL 165 (187)
T ss_dssp HHS-HHHHHHH-HHHHHHH---HHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT----SSHHHHHHHHCSSSHHHHHHH
T ss_pred ccCCchHHHHhccCCCHHH---HHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH----ccHHHHHHHHcCcHHHHHHHH
Confidence 4456789999998877432 334444433332222 2334334445544432 1111 1223567889999
Q ss_pred hcCCCCHHHHHHHHHHHHHHH
Q 009182 287 QLSSEWEATRIEALHWISTLL 307 (541)
Q Consensus 287 ~L~~~~~~~R~aal~wL~~L~ 307 (541)
.+.+++..+|..|+..|..+.
T Consensus 166 ~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 166 SLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp T--TTSHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887764
No 350
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=47.06 E-value=50 Score=30.04 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=63.1
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCChHhH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhh--hhHHHHHHH
Q 009182 249 KEEKIRVVARETNEELRAIKADPADGFDVGPI-LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH--FLNDIFDTL 325 (541)
Q Consensus 249 ~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~i-l~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~--~l~~l~p~L 325 (541)
..+++|..|.-+..++++..+++ +... -+.+...+.+........++..+.+++.+.|+-..+ ..+++.+.+
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~-----~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREE-----FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 46788888877776665443321 2333 334444445544557888899999999888865433 245677777
Q ss_pred HHhcC--CCCHHHHHHHHHHHHHHhc
Q 009182 326 LKALS--DPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 326 l~~L~--D~~~~V~~~~~~~L~~i~~ 349 (541)
+.... .++..+...+++++..-+.
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc~ 117 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAACI 117 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHTT
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHc
Confidence 77777 4566677788999998883
No 351
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=46.77 E-value=64 Score=29.79 Aligned_cols=76 Identities=25% Similarity=0.416 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcCCCHH-HHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh
Q 009182 72 NQIFDALCKLSADSDAN-VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (541)
Q Consensus 72 ~~i~~~L~kl~~D~d~~-VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~ 150 (541)
+..++.+.+.++=.+++ |+++-..|..= ...+...-+..|...+ .++.||++|++++.. .++.++.
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W--------~~i~~~~aLeLL~~~f--~~~~VR~yAV~~L~~---~sd~eL~ 111 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKW--------AKIDIEDALELLSPYF--TNPVVRKYAVSRLKL---ASDEELL 111 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcC--------CCCCHHHHHHHcCccC--CCHHHHHHHHHHHHh---CCHHHHH
Confidence 45566666666444443 33332332221 1112223344444444 469999999999885 5577888
Q ss_pred hchHHHHHHH
Q 009182 151 GFLPDFLDGL 160 (541)
Q Consensus 151 ~~lp~~L~~L 160 (541)
.|+|.+++.|
T Consensus 112 ~yL~QLVQaL 121 (166)
T cd00870 112 LYLLQLVQAL 121 (166)
T ss_pred HHHHHHHHHH
Confidence 9999887744
No 352
>PF14961 BROMI: Broad-minded protein
Probab=46.47 E-value=6.3e+02 Score=30.82 Aligned_cols=69 Identities=28% Similarity=0.337 Sum_probs=54.0
Q ss_pred HhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhChHHHh--hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 278 GPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 278 ~~il~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~~i~--~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
++=+..+.+++. +...++|.+|++ .|+...|.++. +..+.+-..|...|+||++.+...+++..++..+
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq---~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fs 231 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQ---ILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFS 231 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHH---HHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 344477788884 455778999876 45666777774 4678888899999999999999999999998763
No 353
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=46.33 E-value=2.8e+02 Score=26.80 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=14.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHH
Q 009182 36 PVLNSFSDQDSRVRYYACEALYN 58 (541)
Q Consensus 36 ~vl~~l~D~d~~VR~~A~eaL~~ 58 (541)
-++.++.--+..+|++|+..++.
T Consensus 60 ~~~~L~~~~~~~~~lva~~~~~~ 82 (222)
T COG4912 60 NALNLWATLDREARLVAAFTLYG 82 (222)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhh
Confidence 34555555566678877766543
No 354
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.93 E-value=80 Score=34.22 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=66.0
Q ss_pred HHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhc-C-CCHHHHH
Q 009182 16 FLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSA-D-SDANVQS 91 (541)
Q Consensus 16 ~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~-D-~d~~VR~ 91 (541)
.+.++|.++.....-.+.+..+.+-+++++++|.+.|...|..++|.|+..+-..+ .++++...+... . ++..||+
T Consensus 22 NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~ 101 (470)
T KOG1087|consen 22 NLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVRE 101 (470)
T ss_pred HHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHH
Confidence 36778888887888889999999999999999999999999999999986542111 356666777664 3 5778999
Q ss_pred HH-HHHHHHHh
Q 009182 92 AA-HLLDRLVK 101 (541)
Q Consensus 92 ~A-~~L~~l~k 101 (541)
-+ .+++.--+
T Consensus 102 kiL~LI~~W~~ 112 (470)
T KOG1087|consen 102 KILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHHHH
Confidence 88 66654433
No 355
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=44.95 E-value=6.1e+02 Score=30.25 Aligned_cols=241 Identities=12% Similarity=0.107 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHH---------------HHHHHHHHHhhcCcC
Q 009182 166 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLT---------------AITWINEFVKLGGDQ 230 (541)
Q Consensus 166 D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~---------------al~wL~~l~~~~~~~ 230 (541)
|.+..||..+.+.+..+...+...--.+.-.+++.+.++..++.++.... .+..+..++-- --
T Consensus 484 ~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~~dI~~aVlgll~~~A~k--l~ 561 (1697)
T KOG3687|consen 484 DKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPELEERDVAAYSASLEDIKTAVLGLLVILATK--LY 561 (1697)
T ss_pred cchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--hc
Confidence 56678999999999999887754322346778888888766655432211 11111111110 00
Q ss_pred ccc--chhhHHHHHhh--hcCCCChhHHHHHHHHHHHH------HHhhcC---------C--------------------
Q 009182 231 LVP--YYADILGAILP--CISDKEEKIRVVARETNEEL------RAIKAD---------P-------------------- 271 (541)
Q Consensus 231 l~p--~l~~llp~ll~--~l~d~~~~iR~~A~~~~~~L------~~~i~~---------~-------------------- 271 (541)
-+| +--++--.+.. -+.+..|.|++.+..+.-+. .+..+. +
T Consensus 562 ~lP~~ha~~v~~~l~~h~~Lhy~~PKI~~~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~Vv~fspyLGId~pl~p~~~ 641 (1697)
T KOG3687|consen 562 TLPASHATRVYEMLVSHIQLHYKHPKILPIASSIRLQAFDFLFLLRADSLYRLGLPCNKDGVVRFSPYLGIDGPLSPPTG 641 (1697)
T ss_pred cCchHHHHHHHHHHHHhhhhhccCccccchhhHHHHHHHHHHHHHhhcccceecccCCCccEEEeeeeeeecCCCCCCCC
Confidence 011 11122222222 23345677776554433221 121111 0
Q ss_pred CCCCChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC----------CCCHHHHHHH
Q 009182 272 ADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS----------DPSDEVVLLV 340 (541)
Q Consensus 272 ~~~~~l~~il~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~----------D~~~~V~~~~ 340 (541)
+..+.+.-+..++.+.+. +.+|.++.-++.-+-...........+..+++-.+|++.+. |+...++.-+
T Consensus 642 p~~i~~~~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~~l~~~~e~fs~~~~h~~V~Pv 721 (1697)
T KOG3687|consen 642 PPVVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSMLRLRGAPEGFSRTDLHLAVVPV 721 (1697)
T ss_pred CCcccHHHHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHHhccCCcccCCccccceeehHH
Confidence 012345667778888885 56788887766655444444333345566777777777661 2223333333
Q ss_pred HHHHHHHhc--chhhHHHHHHHHHHhccccchhhhhhHHHHHHH--hhccCChhhHHHHHHHHhccc-----------CC
Q 009182 341 LEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR--LCVLLDAERVYRELSTILEGE-----------AD 405 (541)
Q Consensus 341 ~~~L~~i~~--~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~--Lc~~l~~e~i~~~l~~il~~~-----------~d 405 (541)
+..|--+.. ..+.....+..|-+.+-+ .-++.-|+. .|.+--++.+|+.+.+.+-.. .-
T Consensus 722 ~~~L~~yh~~lQ~~~~~~~I~~l~q~li~------~~aSVcv~~lsi~~Lemp~~~~~~LpD~v~Q~t~~s~t~~LaTP~ 795 (1697)
T KOG3687|consen 722 LTALISYHNYLQKTKQREMIYCLEQGLIH------RCASVCVVALSICSLEMPDIIIKALPDLVVQLTHISATASLATPL 795 (1697)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhh------hhHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhhccc
Confidence 333333331 122233444444443322 222333333 355566788999998886432 23
Q ss_pred hHHHHHHHH
Q 009182 406 LDFACTMVQ 414 (541)
Q Consensus 406 ~~f~~~~v~ 414 (541)
++|+|.|+.
T Consensus 796 leFlS~l~~ 804 (1697)
T KOG3687|consen 796 LEFLSTLAR 804 (1697)
T ss_pred HHHHHHHHH
Confidence 577776654
No 356
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=43.94 E-value=4.3e+02 Score=30.24 Aligned_cols=152 Identities=15% Similarity=0.129 Sum_probs=90.5
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhh
Q 009182 158 DGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYAD 237 (541)
Q Consensus 158 ~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~ 237 (541)
..|+.++.-++..+.+.+...+.+.+..-+ -+-++..|+...-+.+..-. +..++.+. -|+-..
T Consensus 7 ~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~y~~~t~s~~~------~~il~~~~----~P~~K~ 70 (668)
T PF04388_consen 7 TELLSLLESNDLSVLEEIKALLQELLNSDR------EPWLVNGLVDYYLSTNSQRA------LEILVGVQ----EPHDKH 70 (668)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhccc------hHHHHHHHHHHHhhcCcHHH------HHHHHhcC----CccHHH
Confidence 345667777777777777666666654321 12344444443222221111 11122222 234456
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCC---hHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhChHH
Q 009182 238 ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTE 313 (541)
Q Consensus 238 llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~---l~~il~~L~~~L-~~~~~~~R~aal~wL~~L~~~~~~~ 313 (541)
++..+-.++... .-|-.+....+.+ +...+.-+. --++++.|.+.| .+.+..+=.+|+..|.+|.=..|..
T Consensus 71 ~~~~l~~~~~~~--~~Rl~~L~Ll~~~---v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~ 145 (668)
T PF04388_consen 71 LFDKLNDYFVKP--SYRLQALTLLGHF---VRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS 145 (668)
T ss_pred HHHHHHHHHcCc--hhHHHHHHHHHHH---HhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch
Confidence 666666677653 4455555555544 443222111 125677777777 4566778889999999999999999
Q ss_pred HhhhhHHHHHHHHHhcC
Q 009182 314 VLHFLNDIFDTLLKALS 330 (541)
Q Consensus 314 i~~~l~~l~p~Ll~~L~ 330 (541)
+.+|++++|....+.++
T Consensus 146 l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 146 LGPHLPDLFNIFGRLLS 162 (668)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999888874
No 357
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=43.26 E-value=92 Score=26.99 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC--C-------hhHHHHHHH
Q 009182 192 VDYGRMAEILVQRA---ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--E-------EKIRVVARE 259 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~---~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~--~-------~~iR~~A~~ 259 (541)
.+...|+.++..++ ..++|.+...|+.-|..++..|++.+...+..-...|-...... + .+||+.|.+
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 35788999999998 67789999999999999999999888777765555554443331 1 248888887
Q ss_pred HHHHH
Q 009182 260 TNEEL 264 (541)
Q Consensus 260 ~~~~L 264 (541)
+..-+
T Consensus 115 i~~lL 119 (125)
T PF01417_consen 115 ILELL 119 (125)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76544
No 358
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=42.52 E-value=2.2e+02 Score=24.35 Aligned_cols=81 Identities=16% Similarity=0.319 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhc----chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccC-Ch
Q 009182 316 HFLNDIFDTLLKALS-DPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL-DA 389 (541)
Q Consensus 316 ~~l~~l~p~Ll~~L~-D~~~~V~~~~~~~L~~i~~----~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l-~~ 389 (541)
.++..++|++.+.|. ...++.+-.+.-.++.++. .++-++.+|..+++....... .+.+-..+-++|+.- +.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~ 79 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENV 79 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccc
Confidence 367889999999999 7788999999999999984 455666666666665544432 123444555677666 32
Q ss_pred ----hhHHHHHHH
Q 009182 390 ----ERVYRELST 398 (541)
Q Consensus 390 ----e~i~~~l~~ 398 (541)
+++++.+..
T Consensus 80 ~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 80 DSLPRKVFKALLK 92 (121)
T ss_pred ccCCHHHHHHHHc
Confidence 345555443
No 359
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=41.39 E-value=1.5e+02 Score=29.46 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=60.2
Q ss_pred hHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcchhhHH
Q 009182 279 PILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS--DPSDEVVLLVLEVHACIAKDLQHFR 355 (541)
Q Consensus 279 ~il~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~--D~~~~V~~~~~~~L~~i~~~~~~f~ 355 (541)
.++....+.++ +++...-.||++.|.++.+....+-..-+...+..-..+|. |.+.--....|++..++..-.+
T Consensus 12 ~iie~f~~~l~eDpd~a~~vAAIraL~~vL~~s~a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~s--- 88 (313)
T KOG1466|consen 12 SIIEYFLSFLQEDPDLAMAVAAIRALLEVLRRSQATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRAS--- 88 (313)
T ss_pred hHHHHHHHHHhcCchhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhh---
Confidence 46667777774 46777899999999999888765543344444444455555 4443334567777777663111
Q ss_pred HHHHHHH--HhccccchhhhhhHHHHHHHhhc
Q 009182 356 QLVVFLV--HNFRVDNSLLEKRGALIIRRLCV 385 (541)
Q Consensus 356 ~~m~~LL--~~~~~~~~ll~~r~~~iir~Lc~ 385 (541)
++ +-|.++++.+-+||..-++..|.
T Consensus 89 -----lld~~Df~~ck~~l~erg~~F~~~~~~ 115 (313)
T KOG1466|consen 89 -----LLDYEDFEQCKQHLLERGELFIERARK 115 (313)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 13344556666677777766654
No 360
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=40.72 E-value=2.8e+02 Score=28.99 Aligned_cols=171 Identities=14% Similarity=0.124 Sum_probs=96.8
Q ss_pred hhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhc----CCCchhhhchHHHHHHHHHHcCCCC--------------H
Q 009182 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDS----VPDIDMLGFLPDFLDGLFNMLSDSS--------------H 169 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~----~~~~~l~~~lp~~L~~L~~lL~D~~--------------~ 169 (541)
..+++.....+..+++. .+++|=.+++.-+....+ ..+.+ +..+...|+++++|.. .
T Consensus 136 ~l~is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~----I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~ 211 (356)
T PF03542_consen 136 YLPISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGAD----IDQLRNALCSMICDRSFLESLSNKPTGFKRA 211 (356)
T ss_pred eeeHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCc----HHHHHHHHHHHHhcccccccccCCCCCCCHH
Confidence 36778888888888874 789998888877764332 12332 7777778888877642 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC
Q 009182 170 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK 249 (541)
Q Consensus 170 eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~ 249 (541)
|+.......|..++.=-..-...+-+.|+..+...+.+. ....|+..+.-.+--.|..+.+++|.++.-+.+.....
T Consensus 212 D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~ 288 (356)
T PF03542_consen 212 DLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTP 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccch
Confidence 555555566665542111000112467888888776653 34556666665555556666656666555544433221
Q ss_pred ChhHHHHHHHHHHHHHHhhcCC-C--CCC---ChHhHHHHHHHhcCCC
Q 009182 250 EEKIRVVARETNEELRAIKADP-A--DGF---DVGPILSIATRQLSSE 291 (541)
Q Consensus 250 ~~~iR~~A~~~~~~L~~~i~~~-~--~~~---~l~~il~~L~~~L~~~ 291 (541)
.+|.-.+.-|..+..-. . ..+ +|..+..+.....+..
T Consensus 289 -----~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~~~ 331 (356)
T PF03542_consen 289 -----NMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQPS 331 (356)
T ss_pred -----hhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccchh
Confidence 13333333332222211 0 112 3566777777777543
No 361
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=38.28 E-value=20 Score=33.74 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCCHH-HHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh
Q 009182 72 NQIFDALCKLSADSDAN-VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (541)
Q Consensus 72 ~~i~~~L~kl~~D~d~~-VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~ 150 (541)
++.+|.+.+.+.-.++. |+++-..+..-- ..+...-+..|...+ .++.||++|++++.. .++.++.
T Consensus 44 p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~--------~~~p~~AL~LL~~~f--~~~~VR~yAv~~L~~---~~d~~l~ 110 (184)
T PF00613_consen 44 PEALPKLLRSVDWWNPEEVSEAYQLLLQWP--------PISPEDALELLSPNF--PDPFVRQYAVRRLES---LSDEELL 110 (184)
T ss_dssp GGGHHHHHTTSTTTSHHHHHHHHHHHHTSH--------CTTHHHHHHCTSTT-----HHHHHHHHHHHCT---S-HHHHH
T ss_pred chHHHHHHhhCCCCchhhHHHHHHHHHcCC--------CCCHHHHHHHHHhhc--cHHHHHHHHHHHHHH---cCchHHH
Confidence 45677777766666654 443324332210 111222233333333 359999999999854 6677788
Q ss_pred hchHHHHH
Q 009182 151 GFLPDFLD 158 (541)
Q Consensus 151 ~~lp~~L~ 158 (541)
.|+|.+..
T Consensus 111 ~yLpQLVQ 118 (184)
T PF00613_consen 111 FYLPQLVQ 118 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888777
No 362
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=37.39 E-value=6.5e+02 Score=28.41 Aligned_cols=170 Identities=21% Similarity=0.263 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhc----chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHHH---------h
Q 009182 334 DEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTI---------L 400 (541)
Q Consensus 334 ~~V~~~~~~~L~~i~~----~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~i---------l 400 (541)
.++..-++..+...+. .....+.++......-.+...-++-.+=.+++.+|...++..+...|=+. .
T Consensus 256 te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~ 335 (661)
T KOG2256|consen 256 TEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKF 335 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Confidence 3455555555555442 23333444444444444443333333334666677777774333222222 1
Q ss_pred cccCChHHHHHHHHHhHHhhcCcHhH---------HHHHHHHhhcc--CCcchhHHHHHHHHhhccChHHHHHHHHHHhh
Q 009182 401 EGEADLDFACTMVQALNLILLTSSEL---------SELRDLLKKSL--VNPAGKDLFVSLYASWCHSPMAIISLCLLAQT 469 (541)
Q Consensus 401 ~~~~d~~f~~~~v~~L~~il~t~~el---------~~~R~~L~~~~--~~~~~~~lf~~l~~~w~~n~~~~~slcll~~~ 469 (541)
.....+++.+-|-.++...+.+.++. ..+=..||+++ .++++.. .+| .|-| +-||=||++.
T Consensus 336 ~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~---~VY-nWqf----i~cL~lW~rv 407 (661)
T KOG2256|consen 336 VTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQ---SVY-NWQY----VHCLDLWLRV 407 (661)
T ss_pred CCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH---HHH-HHHH----HHHHHHHHHH
Confidence 12244555555555555555555433 12233444433 3444433 333 4522 2345556552
Q ss_pred hHHHHHHHHHhhccccchHHHHH-HHHHHHHhhhhhhhHhhhhhcC
Q 009182 470 YHHASAVIQSLVEEDLNVKFLVQ-LDKLIRLLETPIFAYLRLQVLK 514 (541)
Q Consensus 470 y~~a~~ll~~~~~~~~~~~~l~~-id~lvql~esp~f~~lRl~ll~ 514 (541)
-..++..-. ++..=+-.|+| +=-.++|+.+|-|.-||++.+.
T Consensus 408 isf~~~~~s---~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir 450 (661)
T KOG2256|consen 408 ISFANGSAS---QLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIR 450 (661)
T ss_pred HHHhhccHh---hhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHH
Confidence 211111111 11112233445 3345789999999999998775
No 363
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=37.38 E-value=5.3e+02 Score=27.34 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhc
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN 124 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~ 124 (541)
+.|++-..++.|.|..||..| ..|..+|++ ..+..+.|.+.++++
T Consensus 61 ~a~da~~d~~ed~d~~ir~qaik~lp~fc~~-------d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 61 EAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG-------DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHhhhccccccchhhHHHHHhccchhccC-------chhhhhHHHHHHHHH
Confidence 566777789999999999999 888888884 236667777777775
No 364
>PRK04330 hypothetical protein; Provisional
Probab=36.26 E-value=2.4e+02 Score=23.09 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCCCH--HHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCC--HHHHHHHHHHHHHhhc
Q 009182 71 FNQIFDALCKLSADSDA--NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLN--PYVRQFLVGWITVLDS 143 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d~--~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~--~~vR~~a~~~l~~L~~ 143 (541)
++++...|-+...|+.- ++|.+| ++.+.+.++- ++...-...-|-.|-+.-+|+| .++|..+-+.++.|-.
T Consensus 11 ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~--~~~~vRaA~AIs~LdeIs~DPNmP~h~RT~IW~ivS~LEt 86 (88)
T PRK04330 11 IKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEE--ESPGVRAATAISILDEISNDPNMPLHTRTLIWNIVSQLET 86 (88)
T ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcC--cchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc
Confidence 45666667777777643 888888 5544443311 0011112233666666666665 4667766666665544
No 365
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.19 E-value=3.3e+02 Score=26.35 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=25.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCC--HHHHHHH-HHHHHHHhHh
Q 009182 39 NSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD--ANVQSAA-HLLDRLVKDI 103 (541)
Q Consensus 39 ~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d--~~VR~~A-~~L~~l~kdi 103 (541)
..+.|.+..+=..|.|++..+...+.......+.+.+..+.-.-.+.+ .++-... ..++++.+..
T Consensus 85 ~~~~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~ 152 (219)
T PF14677_consen 85 SEVEDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQREL 152 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHHTS----STTTT-HHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCccccccHHHHHHHHHHHHHHHH
Confidence 344788888888888887776655432222333444444322222222 2444444 4455554444
No 366
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=35.76 E-value=1.4e+02 Score=25.87 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=52.0
Q ss_pred CChHhHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC-----CC-----CHHHHHHHH
Q 009182 275 FDVGPILSIATRQL---SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-----DP-----SDEVVLLVL 341 (541)
Q Consensus 275 ~~l~~il~~L~~~L---~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~-----D~-----~~~V~~~~~ 341 (541)
.++..|+.++.+.| .+.+|.....||..+..|..+.++.+...+..-... ++.|. |+ ...||.+|-
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~-I~~l~~f~~~d~~g~d~~~~VR~~A~ 113 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDI-IRELQDFQYVDPKGKDQGQNVREKAK 113 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHH-HHGGGG---BBTTSTBHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HhhcceeeccCCCCccHHHHHHHHHH
Confidence 45678999999999 678899999999999999999998877665443332 23332 22 235788877
Q ss_pred HHHHHHh
Q 009182 342 EVHACIA 348 (541)
Q Consensus 342 ~~L~~i~ 348 (541)
+++..+.
T Consensus 114 ~i~~lL~ 120 (125)
T PF01417_consen 114 EILELLN 120 (125)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 7766654
No 367
>PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation. RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B ....
Probab=35.43 E-value=2.3e+02 Score=26.57 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=47.0
Q ss_pred HhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhc---CCCHHHHHHH--HHHHHHhhcCCCchhhhch
Q 009182 80 KLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN---VLNPYVRQFL--VGWITVLDSVPDIDMLGFL 153 (541)
Q Consensus 80 kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~---d~~~~vR~~a--~~~l~~L~~~~~~~l~~~l 153 (541)
.+++| +.+||.++ +..|.+++...... .+....|+..|.-.+. .++ .++... =+.+..|..+... .|+
T Consensus 75 Sv~~~-~~~vk~av~~~~Dall~kaFs~~-~~~~~~f~n~LLV~mGLLKsEd-K~k~i~~l~G~l~~Leh~vqq---~YF 148 (183)
T PF07834_consen 75 SVYND-ESEVKSAVLQCIDALLKKAFSSA-SFQSNSFLNSLLVHMGLLKSED-KFKPISNLPGPLLALEHAVQQ---DYF 148 (183)
T ss_dssp CT--S-SHHHHHHHHHHHHHHHHHHHCST-TS-HHHHHHHHHHHTTSSSSSS-HHHHHSHHHHHHHHHHHHCCS---TTS
T ss_pred HHHcC-cHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHhccccccc-ccCCCCCCchHHHHHHHHhhh---hhc
Confidence 35566 58999999 88999998877653 3455666777766653 455 444321 1222233333333 678
Q ss_pred HHHHHHHH-HHcCCCC
Q 009182 154 PDFLDGLF-NMLSDSS 168 (541)
Q Consensus 154 p~~L~~L~-~lL~D~~ 168 (541)
|.-...++ .+++-++
T Consensus 149 p~~~~~~L~aFlsKp~ 164 (183)
T PF07834_consen 149 PKSTRPLLQAFLSKPN 164 (183)
T ss_dssp -GGGHHHHHHHHCSCC
T ss_pred cHHHHHHHHHHHcCCc
Confidence 87665544 5556554
No 368
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=35.19 E-value=3.8e+02 Score=25.07 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=68.8
Q ss_pred chhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHh
Q 009182 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-----EATRIEALHWISTLLN 308 (541)
Q Consensus 234 ~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~-----~~~R~aal~wL~~L~~ 308 (541)
...+++..+++...+.-+.+|..|.++...+...-...-..++ =.+.+.+.+..+. |..=..+..-+..+..
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip---~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP---HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC---cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 3567788888888888889999999988777521111001111 1233344343222 2211112221112211
Q ss_pred hChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHhccccc
Q 009182 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDN 369 (541)
Q Consensus 309 ~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~----~~~~~f~~~m~~LL~~~~~~~ 369 (541)
. -.|...++.-+.-+...-++.++..+-.+|-.+. .+...+..++..+++.++++.
T Consensus 81 ~-----~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~ 140 (193)
T PF12612_consen 81 L-----PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENL 140 (193)
T ss_pred c-----HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC
Confidence 1 1344455555566666666666666666665554 355667778888877776543
No 369
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=34.65 E-value=95 Score=29.17 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHH
Q 009182 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~l 242 (541)
.+....++.+-.... ++.||..|+.++.. .+.+++.-|+|++++++
T Consensus 74 ~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~~---~~d~~l~~yLpQLVQaL 119 (184)
T smart00145 74 LDPEDALELLSPKFP--DPFVRAYAVERLES---ASDEELLLYLLQLVQAL 119 (184)
T ss_pred CCHHHHHHHhCccCC--CHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 456666766666554 78999999999864 45567777888888776
No 370
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.18 E-value=4.8e+02 Score=28.48 Aligned_cols=73 Identities=12% Similarity=0.259 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC-CChhHHH
Q 009182 177 SALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KEEKIRV 255 (541)
Q Consensus 177 ~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d-~~~~iR~ 255 (541)
..++.+++.+ +.+.|+..+++.+...++.-+...+.|+.+ .++++.++..++- .++++..
T Consensus 21 ~~v~~llkHI------~~~~ImDlLLklIs~d~~~~~~~ilewL~~-------------q~LI~~Li~~L~p~~~~~~q~ 81 (475)
T PF04499_consen 21 NFVDNLLKHI------DTPAIMDLLLKLISTDKPESPTGILEWLAE-------------QNLIPRLIDLLSPSYSSDVQS 81 (475)
T ss_pred cHHHHHHHhc------CCcHHHHHHHHHHccCcccchHHHHHHHHH-------------hCHHHHHHHHhCCCCCHHHHH
Confidence 3455555544 366777778777776667777788888864 2445555555542 3455655
Q ss_pred HHHHHHHHHHHhh
Q 009182 256 VARETNEELRAIK 268 (541)
Q Consensus 256 ~A~~~~~~L~~~i 268 (541)
.|.+....+.+..
T Consensus 82 naa~~L~aII~is 94 (475)
T PF04499_consen 82 NAADFLKAIIRIS 94 (475)
T ss_pred HHHHHHHHHHHHh
Confidence 5666655554443
No 371
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=34.18 E-value=45 Score=31.08 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHH
Q 009182 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLD 158 (541)
Q Consensus 126 ~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~ 158 (541)
.+|.||++++.++.. .+..++..|+|.+++
T Consensus 83 ~~~~Vr~yAvr~L~~---~~~e~l~~YlpQLVQ 112 (175)
T cd00871 83 GHPLVLQYAVRVLES---YPVETVFFYIPQIVQ 112 (175)
T ss_pred CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHH
Confidence 579999999999875 667788899999887
No 372
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=34.05 E-value=1.2e+02 Score=27.52 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHH
Q 009182 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (541)
Q Consensus 192 ~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~l 242 (541)
.+...-++.+..... ++.||..|+.++.. .+.+++.-|+|++++++
T Consensus 69 ~~~~~aL~LL~~~~~--~~~vr~yAv~~L~~---~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 69 LSPEDALELLSPKYP--DPVVRQYAVRVLES---ASDDELLLYLPQLVQAL 114 (152)
T ss_pred CCHHHHHHHcCCcCC--CHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 345555555555444 59999999999865 45567777888887766
No 373
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=34.04 E-value=46 Score=30.87 Aligned_cols=31 Identities=23% Similarity=0.588 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHH
Q 009182 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG 159 (541)
Q Consensus 126 ~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~ 159 (541)
.++.||++|++++.. .++.++..|+|.+++.
T Consensus 83 ~d~~VR~yAV~~L~~---~~ddeL~~yLpQLVQa 113 (169)
T cd00869 83 PDQEVRAHAVQWLAR---LSNDELLDYLPQLVQA 113 (169)
T ss_pred CChHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Confidence 457899999999875 5667788888888773
No 374
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=33.56 E-value=3.5e+02 Score=24.11 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCCCCCCChHhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhChHHHhhh--hHHHHHH-HHHhcCC---C
Q 009182 260 TNEELRAIKADPADGFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDT-LLKALSD---P 332 (541)
Q Consensus 260 ~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~-~~~~~R~aal~wL~~L~~~~~~~i~~~--l~~l~p~-Ll~~L~D---~ 332 (541)
.+-.+.+.+..+. ..-...+..+.+.+.+ .+..+-.-||..+-++.++|+..+... ..+++.. |.+.+++ +
T Consensus 21 ~ileicD~In~~~--~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~ 98 (141)
T cd03565 21 LNMEICDIINETE--DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNP 98 (141)
T ss_pred HHHHHHHHHhCCC--CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCC
Confidence 3444555554421 2345788899999974 577777778999999999999877432 2345555 6777764 3
Q ss_pred CHHHHHHHHHHHHHHh
Q 009182 333 SDEVVLLVLEVHACIA 348 (541)
Q Consensus 333 ~~~V~~~~~~~L~~i~ 348 (541)
...|+.+.+.++..-+
T Consensus 99 ~~~Vk~kil~li~~W~ 114 (141)
T cd03565 99 PTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4588888888777766
No 375
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=32.37 E-value=3.8e+02 Score=24.24 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHhhh----------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 292 WEATRIEALHWISTLLNRHRTEVLHF----------LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 292 ~~~~R~aal~wL~~L~~~~~~~i~~~----------l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
+...|.-++..+..+.+..+..+..+ -+.+.|.+++.+..+++.+...+++++..+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~ 101 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLL 101 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 45678899999999999988877622 2457789998888777888888888777766
No 376
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=31.50 E-value=3.1e+02 Score=32.14 Aligned_cols=77 Identities=27% Similarity=0.330 Sum_probs=53.3
Q ss_pred hhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhH-HHHHHHHhhccCCcchhHHHHHHHHh
Q 009182 374 KRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSEL-SELRDLLKKSLVNPAGKDLFVSLYAS 452 (541)
Q Consensus 374 ~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el-~~~R~~L~~~~~~~~~~~lf~~l~~~ 452 (541)
.-|..+...+...++ .++++.|.++.+-.++++-+..-++.+|..+-.-.+. .+||..|++- ..++-..+..
T Consensus 217 ~~~~~lg~~i~~~l~-~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~v-----K~~L~~~l~~- 289 (806)
T PF05478_consen 217 NIGSLLGGDIQDQLG-SNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGV-----KRDLNNTLQD- 289 (806)
T ss_pred hccchhhHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHh-
Confidence 344444444444443 5788999999887778877777777777776555555 6777777762 4567777777
Q ss_pred hccCh
Q 009182 453 WCHSP 457 (541)
Q Consensus 453 w~~n~ 457 (541)
+|+++
T Consensus 290 ~C~~~ 294 (806)
T PF05478_consen 290 LCTNR 294 (806)
T ss_pred hCCCh
Confidence 99995
No 377
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=31.10 E-value=4.6e+02 Score=24.76 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=63.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHhHhhcc-----cchh
Q 009182 40 SFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD----SDANVQSAAHLLDRLVKDIVTE-----SDQF 110 (541)
Q Consensus 40 ~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D----~d~~VR~~A~~L~~l~kdi~~e-----~~~~ 110 (541)
.+.|+++..--.+|..|.|+.+.-.+ ...+...-.+ ....+...+..++++++..+.. ....
T Consensus 3 ~i~~~~~~~adl~~MLLsNlT~~~~~---------~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~ 73 (192)
T PF04063_consen 3 YITDPKSPLADLACMLLSNLTRSDSG---------CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKD 73 (192)
T ss_pred eecCCCcchHHHHHHHHHHhccchHH---------HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCc
Confidence 45688888888889999998863221 1222222222 1222333334455555544431 1233
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
..+.+.+.|...- .-+..|++.+.- . .+.+ .+..|..++.-.+..-|..+..++..++
T Consensus 74 ~~~yla~vl~NlS--~~~~gR~~~l~~---------~---~~~~-~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 74 NYDYLASVLANLS--QLPEGRQFFLDP---------Q---RYDG-PLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred chhHHHHHHHHhc--CCHHHHHHHhCc---------h---hhhh-HHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 4555666666554 347888877711 1 1111 3444555666665555666766666665
No 378
>PF14961 BROMI: Broad-minded protein
Probab=30.55 E-value=1e+02 Score=36.94 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=48.3
Q ss_pred HHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHHHhhcCCCHHHH
Q 009182 13 VEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDALCKLSADSDANVQ 90 (541)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~--~~~~~i~~~L~kl~~D~d~~VR 90 (541)
.||...++|++.- ++-.+||..|.+.|-.+ .-+.+. .+|+.+...|...++|||+.+.
T Consensus 160 qe~lq~i~d~ld~-----------------~~P~evR~eAlq~Lc~~---p~SDVls~E~W~~L~~~L~~~LsDpD~~is 219 (1296)
T PF14961_consen 160 QEQLQLIADKLDP-----------------GQPKEVRLEALQILCSA---PPSDVLSCESWSVLRENLTDALSDPDPEIS 219 (1296)
T ss_pred HHHHHHHHHhcCC-----------------CCchHHHHHHHHHHhcC---ChhhccccccHHHHHHHHHHHcCCCCHHHH
Confidence 5666666665555 67789999998876542 222232 6789999999999999999999
Q ss_pred HHH-HHHHHH
Q 009182 91 SAA-HLLDRL 99 (541)
Q Consensus 91 ~~A-~~L~~l 99 (541)
..+ ....+.
T Consensus 220 ~~~L~f~Ak~ 229 (1296)
T PF14961_consen 220 DASLRFHAKM 229 (1296)
T ss_pred HHHHHHHHHh
Confidence 888 554444
No 379
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=30.28 E-value=4e+02 Score=29.72 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=51.9
Q ss_pred HHHHHHHHHhh-cCCCHHHHHHH-HHHHHHHhHhhccc-chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc
Q 009182 72 NQIFDALCKLS-ADSDANVQSAA-HLLDRLVKDIVTES-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI 147 (541)
Q Consensus 72 ~~i~~~L~kl~-~D~d~~VR~~A-~~L~~l~kdi~~e~-~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~ 147 (541)
.+++-.+.+++ ..|...||-++ ..|.++.+-...+. ++..++.+.-.+.-.+.|+++-+++.++++.+.++...+.
T Consensus 478 ~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 478 EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 34444444555 66666788777 77777776444432 2334555555566677899999999999999999987653
No 380
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.46 E-value=7.1e+02 Score=27.14 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=45.1
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhc
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
.+.++..|...+..+++.-+..+++|+.. . .+++.|...|+ +.+.++...|+..|..+++.-.
T Consensus 32 ~~~ImDlLLklIs~d~~~~~~~ilewL~~------q-------~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 32 TPAIMDLLLKLISTDKPESPTGILEWLAE------Q-------NLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred CcHHHHHHHHHHccCcccchHHHHHHHHH------h-------CHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45668888888888888999999999974 1 33444444665 3467788888888888876544
No 381
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=29.28 E-value=8.3e+02 Score=27.19 Aligned_cols=320 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred hhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhh-----hHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009182 21 DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-----IFFNQIFDALCKLSADSDANVQSAAHL 95 (541)
Q Consensus 21 ~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~-----~~~~~i~~~L~kl~~D~d~~VR~~A~~ 95 (541)
+.+++...++..+-+-...+= ++.+|+.+-|+.+.++-....+... |.|.+.++.+..-+.+--..-|..+.+
T Consensus 122 e~~e~s~~Fm~~l~~~f~~~h--~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~a 199 (552)
T PF14222_consen 122 EAFEESAEFMQSLAKFFLEAH--KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVA 199 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhH
Q ss_pred HHHHHhHhhcccchhcHhhhHH-HHHHHhcC-CCHHHHHHHHHHHHHh--------hcCCCchhhhchHHHHHHHHHHcC
Q 009182 96 LDRLVKDIVTESDQFSIEEFIP-LLRERMNV-LNPYVRQFLVGWITVL--------DSVPDIDMLGFLPDFLDGLFNMLS 165 (541)
Q Consensus 96 L~~l~kdi~~e~~~~~l~~~iP-~L~e~l~d-~~~~vR~~a~~~l~~L--------~~~~~~~l~~~lp~~L~~L~~lL~ 165 (541)
..=..--+...+.++-++...| .+...... ++...|..++.++.++ ..-........+..++..+| .
T Consensus 200 fPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lf---p 276 (552)
T PF14222_consen 200 FPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDKETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLF---P 276 (552)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHc---c
Q ss_pred CCCHHH--HH-HHHHHHHHHHHHhc-CCCCCChHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHhhcCcCcccc
Q 009182 166 DSSHEI--RQ-QADSALWEFLQEIK-NSPSVDYGRMAEILVQRAASPD-------EFTRLTAITWINEFVKLGGDQLVPY 234 (541)
Q Consensus 166 D~~~eV--R~-~a~~~L~~ll~~i~-~~~~~~~~~ii~~Ll~~~~~~~-------~~vr~~al~wL~~l~~~~~~~l~p~ 234 (541)
-..+.+ +. ...+.+.+++..|+ ..++..+++++--|+..-.... +..-.+.=..+..+...-..+--|+
T Consensus 277 ~~kk~~i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~ 356 (552)
T PF14222_consen 277 KGKKGWIPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPP 356 (552)
T ss_pred CCCCcccCCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCC
Q ss_pred hh---------------------hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC----------------------
Q 009182 235 YA---------------------DILGAILPCISDKEEKIRVVARETNEELRAIKADP---------------------- 271 (541)
Q Consensus 235 l~---------------------~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~---------------------- 271 (541)
.| ..-...-..+.+-.++++..-.+....+-..++..
T Consensus 357 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~ 436 (552)
T PF14222_consen 357 PPPTSDPSGNTLRVKYTPSNEYLSNEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFG 436 (552)
T ss_pred CCCcCCCCCcccccccCcccccccchhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCccccccc
Q ss_pred ---------------------------CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHH
Q 009182 272 ---------------------------ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDT 324 (541)
Q Consensus 272 ---------------------------~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~ 324 (541)
++.+.+.++++.|.+..-|.+..+|.+|.+.|..++...| .-...+..+..+
T Consensus 437 ~~~d~~~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p-~~~~vi~~Fa~F 515 (552)
T PF14222_consen 437 RNDDMVTDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP-NRQQVITGFARF 515 (552)
T ss_pred ccccccccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Q ss_pred HHHhcCCCCHHH----------HHHHHHHHHHH
Q 009182 325 LLKALSDPSDEV----------VLLVLEVHACI 347 (541)
Q Consensus 325 Ll~~L~D~~~~V----------~~~~~~~L~~i 347 (541)
+.+ +.|..+.. ...+++++-++
T Consensus 516 if~-~~d~~~~~~~~~~l~~~~~~~~L~lyveL 547 (552)
T PF14222_consen 516 IFR-FDDKYPSMYDGGYLGSGEIESLLKLYVEL 547 (552)
T ss_pred Hee-CcccCccchhhhccchHHHHHHHHHHHHH
No 382
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=29.23 E-value=5.8e+02 Score=27.25 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhcCcCcccchhh--HHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 196 RMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYAD--ILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 196 ~ii~~Ll~~~~~~~-~~vr~~al~wL~~l~~~~~~~l~p~l~~--llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
.++.+|++.++.++ |.+-..|++=|++++...|+.-. -+.+ -=..+++.|..++|+||--|..+.+.++
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 57777777776554 66666788888988887654321 0111 1136788899999999988888777664
No 383
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=27.97 E-value=3.1e+02 Score=23.13 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhChHH--HhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchh
Q 009182 296 RIEALHWISTLLNRHRTE--VLHFLNDIFDTLLKALS--DPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSL 371 (541)
Q Consensus 296 R~aal~wL~~L~~~~~~~--i~~~l~~l~p~Ll~~L~--D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~l 371 (541)
|...+..++.+...++.. ..-..+. +|.+|.... |.+|-+|.-+.+++..++.+.+-=..++.+|-..=..+...
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~~~~~~~ 81 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQGVADNEE 81 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccCCcchHH
Confidence 455666777777666532 2223334 677776654 44799999999999999976665566666665433344444
Q ss_pred hhh
Q 009182 372 LEK 374 (541)
Q Consensus 372 l~~ 374 (541)
|++
T Consensus 82 L~~ 84 (102)
T PF09759_consen 82 LEE 84 (102)
T ss_pred HHH
Confidence 443
No 384
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.80 E-value=3.5e+02 Score=22.41 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=45.8
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRL 99 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~---~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A~~L~~l 99 (541)
+.+..+++..++.+.-|.+...|.+++..+..+.+.- +..+...|.++++.+-.+.-|.-...+.-|..+.++
T Consensus 31 ~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~ 106 (113)
T PF02847_consen 31 PSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARL 106 (113)
T ss_dssp GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHH
Confidence 3788889988999888999999999998888776431 123334445555555554444222334444444443
No 385
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=27.45 E-value=5.1e+02 Score=24.11 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--cchhh
Q 009182 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL----NDIFDTLLKALSDPSDEVVLLVLEVHACIA--KDLQH 353 (541)
Q Consensus 280 il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l----~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~--~~~~~ 353 (541)
+=|.|...|.. ..++.+..+.++.+....-.++..+- +++-..++. ++.+.+ .+|.-+...+. -.+++
T Consensus 4 ikplLIsCL~~--q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils-~~~~e~---~kA~~IF~~L~~~l~~ef 77 (174)
T PF04510_consen 4 IKPLLISCLTM--QETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILS-LSENEP---VKAFHIFICLPMPLYGEF 77 (174)
T ss_pred hHHHHHHHHHh--hcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH-hhccch---HHHHHHHHhCCchhhhhH
Confidence 33555555543 23445555666655555555554332 233333322 222222 23343443333 14567
Q ss_pred HHHHHHHHHHhcccc---chhhhhhHHHHHHHhhccCChhhHHHHHHHHhcccCCh----HHHHHHHHHhHHhhcCcHhH
Q 009182 354 FRQLVVFLVHNFRVD---NSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADL----DFACTMVQALNLILLTSSEL 426 (541)
Q Consensus 354 f~~~m~~LL~~~~~~---~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~----~f~~~~v~~L~~il~t~~el 426 (541)
+.++|.+|+..+.+. +. +.+.+.|+-.+ +..+...-.+++...+. +.++.|+.++.-..=-..|.
T Consensus 78 l~~~~~~L~~~~~~~L~~p~--~~d~~~W~LAl------~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~ 149 (174)
T PF04510_consen 78 LIPFMENLLPEISKVLLPPE--EVDVEDWVLAL------TGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEV 149 (174)
T ss_pred HHHHHHHHHHHHHHHcCCch--hccHHHHHHHH------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 778888877766422 21 13334444322 34444444444444332 44666777776555555665
Q ss_pred HHHHHHHhh
Q 009182 427 SELRDLLKK 435 (541)
Q Consensus 427 ~~~R~~L~~ 435 (541)
.=+|+-|++
T Consensus 150 ~~l~rgl~~ 158 (174)
T PF04510_consen 150 GFLRRGLRD 158 (174)
T ss_pred HHHHHHHHH
Confidence 666777766
No 386
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.22 E-value=1.8e+02 Score=25.97 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=34.6
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHH
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQS 91 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~ 91 (541)
+-..++..+.++|+.|+..|.+++..-- .+.+.+| =+.|.++++|. ..|.
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~~k---~~~l~pY----~d~L~~Lldd~--~frd 67 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLTWK---DPYLTPY----KDNLENLLDDK--TFRD 67 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHhH----HHHHHHHcCcc--hHHH
Confidence 4466788999999999999999887532 1244455 35666777765 3444
No 387
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=26.34 E-value=8.2e+02 Score=26.13 Aligned_cols=215 Identities=17% Similarity=0.238 Sum_probs=104.1
Q ss_pred hhhcc-hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhH
Q 009182 28 TILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD 102 (541)
Q Consensus 28 ~~l~~-ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~---~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kd 102 (541)
+|.++ ++-.++..|+..|+|-|.+--..|..|-.-. +.-+-..++.+ +++.+-.++.. +|. +.|.- +-.
T Consensus 172 ~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNi---f~~FIyEte~h--nGIaELLEI-lgS 245 (457)
T KOG2085|consen 172 KYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNI---FLRFIYETERH--NGIAELLEI-LGS 245 (457)
T ss_pred HHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcch---hhhhccccccc--CCHHHHHHH-HHH
Confidence 44444 5577888999999999998877776654211 11111111222 22223222221 122 22111 111
Q ss_pred hhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchh-----h-----------hchHHHHHHHHHHcCC
Q 009182 103 IVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM-----L-----------GFLPDFLDGLFNMLSD 166 (541)
Q Consensus 103 i~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l-----~-----------~~lp~~L~~L~~lL~D 166 (541)
|+.. |+ +| -..+.+.+++..+--+.+.....+ . ...|..+.|+.+..--
T Consensus 246 iIng---fA----lP--------lKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~ 310 (457)
T KOG2085|consen 246 IING---FA----LP--------LKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPK 310 (457)
T ss_pred hcCc---cc----Cc--------chhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCC
Confidence 1110 11 01 123556666666555544422211 1 2345667777776644
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHH-HHHHH-HhhcCcCcccchhhHHH
Q 009182 167 SSHEIRQQADSALWEFLQEIKNSPSVDY----GRMAEILVQRAASPDEFTRLTAIT-WINEF-VKLGGDQLVPYYADILG 240 (541)
Q Consensus 167 ~~~eVR~~a~~~L~~ll~~i~~~~~~~~----~~ii~~Ll~~~~~~~~~vr~~al~-wL~~l-~~~~~~~l~p~l~~llp 240 (541)
++..=+..-..-+++.++.+. ...+ .++-..+-.+..+++..|+..|++ |=.+. ..+-.+.-.-.+|.+.|
T Consensus 311 tnS~KEVmFL~ElEEILe~ie---p~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFp 387 (457)
T KOG2085|consen 311 TNSSKEVMFLNELEEILEVIE---PSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFP 387 (457)
T ss_pred CCCcceeeeHhhHHHHHHhcC---HHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhH
Confidence 432222222233445554443 1123 344445566788888899888875 65552 33333333334667777
Q ss_pred HHhhhcCCC-ChhHHHHHHHHHHHHHH
Q 009182 241 AILPCISDK-EEKIRVVARETNEELRA 266 (541)
Q Consensus 241 ~ll~~l~d~-~~~iR~~A~~~~~~L~~ 266 (541)
++-+..+.. +..|.....++...+++
T Consensus 388 aLyr~sk~hWN~~i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 388 ALYRNSKSHWNQAIHNLILNVLKTFME 414 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665443 44555555555555543
No 388
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=26.22 E-value=9.7e+02 Score=26.96 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=76.2
Q ss_pred hhhchHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 009182 149 MLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG--RMAEILVQRAASPDEFTRLTAITWINEFVK 225 (541)
Q Consensus 149 l~~~lp~~L~~L~-~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~--~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~ 225 (541)
+..++.++.+.+| .-..|.++-+|..|...|..-+..++. ++- ..+.+.--.+.|.+..||+.....+..+..
T Consensus 268 ~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~----yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s 343 (740)
T COG5537 268 IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPD----YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCS 343 (740)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchH----HHHhhhcccccccccccchHHHHHHHHHHHHHHHh
Confidence 4456666666555 677899999999998887776644321 111 122222223567778899988887877765
Q ss_pred hcC--cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 009182 226 LGG--DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (541)
Q Consensus 226 ~~~--~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~ 267 (541)
.-+ ..++.|+.+...-|+........-||-.+.+.+..+...
T Consensus 344 ~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~l 387 (740)
T COG5537 344 RIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRIL 387 (740)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHh
Confidence 433 245677888888888877665444999998888877544
No 389
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=25.90 E-value=2.1e+02 Score=26.52 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHHHHH
Q 009182 333 SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIR 381 (541)
Q Consensus 333 ~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir 381 (541)
++.||.-|.+.|...+ +..+..++..|.+.++.+...-..-+.|.++
T Consensus 84 d~~VR~yAV~~L~~~s--d~eL~~yL~QLVQaLKyE~~~ds~La~FLl~ 130 (171)
T cd00872 84 DEHVREFAVRCLEKLS--DDELLQYLLQLVQVLKYEPYHDSDLVRFLLK 130 (171)
T ss_pred CHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHcccccCCHHHHHHHH
Confidence 5788888888888765 4566777777777776553222233444443
No 390
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=25.89 E-value=1.9e+02 Score=31.85 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHhccccchhhhhhHHH
Q 009182 300 LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDNSLLEKRGAL 378 (541)
Q Consensus 300 l~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~-~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~ 378 (541)
|+.+.+.++..|+.+.|| +|.++..|..++|+-+...-.....|+ +..+-+.++++.|.-.++++.. ..
T Consensus 183 LrvlS~Vye~~P~~i~Ph----lP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~------~~ 252 (851)
T KOG3723|consen 183 LRVLSAVYEKQPQPINPH----LPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTH------ND 252 (851)
T ss_pred HHHHHHHHhcCCCccCcc----cHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccc------hh
Q ss_pred HHHHhhccC
Q 009182 379 IIRRLCVLL 387 (541)
Q Consensus 379 iir~Lc~~l 387 (541)
|+-++|+.+
T Consensus 253 i~~~Ilk~i 261 (851)
T KOG3723|consen 253 IILNILKEI 261 (851)
T ss_pred HHHHHHHHH
No 391
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=25.42 E-value=3.4e+02 Score=22.12 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCCCH--HHHHHH-HHHHHHHhHhhcccc--hhcHhhhHHHHHHHhcCCC--HHHHHHHHHHHHHh
Q 009182 71 FNQIFDALCKLSADSDA--NVQSAA-HLLDRLVKDIVTESD--QFSIEEFIPLLRERMNVLN--PYVRQFLVGWITVL 141 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d~--~VR~~A-~~L~~l~kdi~~e~~--~~~l~~~iP~L~e~l~d~~--~~vR~~a~~~l~~L 141 (541)
++++...|-+..+|+.- +||.+| ++.+.+.. +.. ..-...-|-.|-+..+|+| .++|..+-+.++.|
T Consensus 8 i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~----e~~~~~vRaataIs~LdeIsnDPNmP~h~RT~IW~i~S~L 81 (85)
T PF03685_consen 8 IKQAIQMLERIINDTSVPRNIRRAAEEAKEILNN----EEESPGVRAATAISILDEISNDPNMPSHTRTLIWNIVSKL 81 (85)
T ss_dssp HHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-----TTS-HHHHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC----CCcchhHhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH
Confidence 45666666667777643 888888 54333322 111 0111223555555555554 35555555555443
No 392
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=24.85 E-value=7.6e+02 Score=25.27 Aligned_cols=201 Identities=16% Similarity=0.181 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC----chhhhchHHHHHHHHHHcCCC-----C--------HHHHHHHHHH
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPD----IDMLGFLPDFLDGLFNMLSDS-----S--------HEIRQQADSA 178 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~----~~l~~~lp~~L~~L~~lL~D~-----~--------~eVR~~a~~~ 178 (541)
++.+...+....+.+...++..+..+....+ .++..+++-=++.+-+++.-. . +++|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7777788887777777788888888877433 234444443344444444211 1 2899988887
Q ss_pred HHHHHHHhcCCCCC---ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-----cCcccchhhHHHHHhhhcCCCC
Q 009182 179 LWEFLQEIKNSPSV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-----DQLVPYYADILGAILPCISDKE 250 (541)
Q Consensus 179 L~~ll~~i~~~~~~---~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~-----~~l~p~l~~llp~ll~~l~d~~ 250 (541)
+-.|+......... .-..++..+.+.+...++++-...+..+.+-+-..+ ....-|=+..+..+.....+.+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 77776432100000 113446777777777677776666666664321111 1112234456666666555555
Q ss_pred h----hHHHHHHHHHHHHHHhhcCCC-------CC------------------CC-hHhHHHHHHHhcCCCCHHHHHHHH
Q 009182 251 E----KIRVVARETNEELRAIKADPA-------DG------------------FD-VGPILSIATRQLSSEWEATRIEAL 300 (541)
Q Consensus 251 ~----~iR~~A~~~~~~L~~~i~~~~-------~~------------------~~-l~~il~~L~~~L~~~~~~~R~aal 300 (541)
+ .+++.+.+....++ .+.+ .+ .. ...++-.+...++- .+..+..
T Consensus 218 ~~~~~~~~~~vh~fL~~lc---T~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp-~e~~~q~-- 291 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALC---TDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKP-WEDDRQQ-- 291 (330)
T ss_pred CcccchHHHHHHHHHHHHh---cCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCC-CccHHHH--
Confidence 5 67777766655543 2211 00 01 12444445555533 2223322
Q ss_pred HHHHHHHhhChHHHhhhhHHHH
Q 009182 301 HWISTLLNRHRTEVLHFLNDIF 322 (541)
Q Consensus 301 ~wL~~L~~~~~~~i~~~l~~l~ 322 (541)
+.+..+.+.||+=+.+|+...-
T Consensus 292 ~Lvl~Il~~~PeLva~Y~~~~~ 313 (330)
T PF11707_consen 292 ELVLKILKACPELVAPYFNNLP 313 (330)
T ss_pred HHHHHHHHHChHHHHHHHHhhh
Confidence 2367788889888877766553
No 393
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.56 E-value=4.3e+02 Score=24.24 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhc--CcCc--ccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC---CCChHhHHHHHHHh
Q 009182 215 TAITWINEFVKLG--GDQL--VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD---GFDVGPILSIATRQ 287 (541)
Q Consensus 215 ~al~wL~~l~~~~--~~~l--~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~---~~~l~~il~~L~~~ 287 (541)
.++....++.+.+ +++. -+|+.++...+-.... +++|-+.|...+..+ +.+... .+.-+-.++.|..+
T Consensus 36 ~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~--d~~i~q~sLaILEs~---Vl~S~~ly~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 36 YALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM--DASILQRSLAILESI---VLNSPKLYQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc--cchHHHHHHHHHHHH---HhCCHHHHHHHhccCCHHHHHHH
Confidence 3444445555543 2222 2456666665553322 566766666665544 322111 01112345667777
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhChHHH
Q 009182 288 LSSEWEATRIEALHWISTLLNRHRTEV 314 (541)
Q Consensus 288 L~~~~~~~R~aal~wL~~L~~~~~~~i 314 (541)
|+..+.+.+..|+-.+.+|..+++++=
T Consensus 111 Lq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 877888899999999999999987653
No 394
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.01 E-value=1.4e+02 Score=25.52 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=27.1
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAK 61 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k 61 (541)
+-.-.++.+++.+.|++++|+..|-+.|++.+.
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 334456788899999999999999999988764
No 395
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=23.65 E-value=7e+02 Score=27.82 Aligned_cols=67 Identities=28% Similarity=0.357 Sum_probs=44.4
Q ss_pred hhcCcHhHHHHHHHHhhccCCcchhHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHH
Q 009182 419 ILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIR 498 (541)
Q Consensus 419 il~t~~el~~~R~~L~~~~~~~~~~~lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~~~l~~id~lvq 498 (541)
+++|=.|.-+=...|++ .+..|....+++.|||- .++++.+.+-++++++.
T Consensus 167 vlvtlDeIi~~n~~L~~------~w~~ykr~l~~v~~np~-----------------------~f~~~~~~l~~le~ll~ 217 (567)
T PF14745_consen 167 VLVTLDEIIEQNPSLRD------HWSLYKRMLKSVRHNPS-----------------------KFGVTEEKLRQLEKLLA 217 (567)
T ss_pred HHHHHHHHHHhhHHHHH------HHHHHHHHHHHHhcChh-----------------------hcCCCHHHHHHHHHHHH
Confidence 34445555555667777 88999999999999962 45666666667777665
Q ss_pred -----HhhhhhhhHhhhhhcC
Q 009182 499 -----LLETPIFAYLRLQVLK 514 (541)
Q Consensus 499 -----l~esp~f~~lRl~ll~ 514 (541)
+++..+|...==|..+
T Consensus 218 ~le~~ll~g~iF~~~~eq~fd 238 (567)
T PF14745_consen 218 DLEGQLLDGNIFQRCLEQLFD 238 (567)
T ss_pred HHHHHhhcchHHHHHHHHhcc
Confidence 4455566555555555
No 396
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=23.47 E-value=4.7e+02 Score=31.83 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhh
Q 009182 207 SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 245 (541)
Q Consensus 207 ~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~ 245 (541)
-+|.+||..|+.||+. +..+.++.|+|+++.++---
T Consensus 901 fPDqeVR~~AVqwi~~---ls~DeL~d~LPQlVQALK~E 936 (1639)
T KOG0905|consen 901 FPDQEVRAHAVQWIAR---LSNDELLDYLPQLVQALKFE 936 (1639)
T ss_pred CCcHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHH
Confidence 3588999999999975 45567788888888776543
No 397
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.19 E-value=2.6e+02 Score=23.55 Aligned_cols=68 Identities=9% Similarity=0.165 Sum_probs=46.5
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHH-HHHHHHhcCCCCHHHHHHHHHHHH
Q 009182 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI-FDTLLKALSDPSDEVVLLVLEVHA 345 (541)
Q Consensus 278 ~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l-~p~Ll~~L~D~~~~V~~~~~~~L~ 345 (541)
..++..+.+++.......|+.++..+..+...+......+.... .|.+..+....++.++.+..+++.
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57888888888776778899999999988888866544333333 444555555666777776655543
No 398
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=23.18 E-value=4.8e+02 Score=29.92 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=59.9
Q ss_pred HHHHHHhhcCCCHHHHHHH-HHHHHHHh------HhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc
Q 009182 75 FDALCKLSADSDANVQSAA-HLLDRLVK------DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI 147 (541)
Q Consensus 75 ~~~L~kl~~D~d~~VR~~A-~~L~~l~k------di~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~ 147 (541)
+|.....+...++.|+..| .-+.-+|. .-+.+-+. ||.|...+.+++.+|...++.++.++.--...
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlgg------I~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGG------IPKLVALLDHRNDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhcc------HHHHHHHhcCCcHHHHHHHHHHHHhhhcccCC
Confidence 4444555667777777666 43443432 22222233 89999999999999999999999987432211
Q ss_pred --hh--hhchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Q 009182 148 --DM--LGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEF 182 (541)
Q Consensus 148 --~l--~~~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~l 182 (541)
+. +.+.+. ++.+...+.. .+.|||+.+...|-.+
T Consensus 309 ~~NKlai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNL 347 (717)
T KOG1048|consen 309 DSNKLAIKELNG-VPTLVRLLRHTQDDEVRELITGILWNL 347 (717)
T ss_pred cccchhhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcc
Confidence 21 122222 2233345554 4677887776554433
No 399
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.04 E-value=7.1e+02 Score=26.40 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchh--hHHHHHhhhcC-C
Q 009182 172 RQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCIS-D 248 (541)
Q Consensus 172 R~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~--~llp~ll~~l~-d 248 (541)
+..-...+-.++..++..+ -.-...+..+.+++.+.|+.|.+.|+.-++.++.-+|..++-=+. .+...+...+. .
T Consensus 22 T~enW~~IlDvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~ 100 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESK 100 (462)
T ss_pred ccccHHHHHHHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhc
Confidence 3333445555666666543 224678888899999999999999999999998888876541111 22333333333 3
Q ss_pred CChhHHHHHHHHHHHHHHhhcC
Q 009182 249 KEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 249 ~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
..+.|++.-........+.+++
T Consensus 101 ~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 101 AHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred ccHHHHHHHHHHHHHHHHHhcc
Confidence 5667766555555554444443
No 400
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=23.01 E-value=8.6e+02 Score=25.20 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=61.8
Q ss_pred hhcCCCHHHHHHH--HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHH-HHHHHHHHHHHhhcCCCchhhhchHH--
Q 009182 81 LSADSDANVQSAA--HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPY-VRQFLVGWITVLDSVPDIDMLGFLPD-- 155 (541)
Q Consensus 81 l~~D~d~~VR~~A--~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~-vR~~a~~~l~~L~~~~~~~l~~~lp~-- 155 (541)
.+.++.++++++- .-++++.||-. .++..|.+.++..+|. .-+.||+=|+.+....|.. ...+..
T Consensus 330 ~l~wSp~H~~~dFWs~N~d~l~kdny---------~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg 399 (432)
T COG5231 330 RLEWSPYHHKKDFWSTNLDMLIKDNY---------EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYG 399 (432)
T ss_pred cccCCCcccccCchhhhHHHHhhhhH---------HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhh
Confidence 4677777777776 45677666332 3477888888887776 4566777777665544321 111211
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 156 ~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
.-..++.+++.++++||-+|.+++..++.
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 13457789999999999999888776653
No 401
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.35 E-value=2.9e+02 Score=31.47 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHHHhhccCChhhHHHHHHHHhcccCChHH
Q 009182 379 IIRRLCVLLDAERVYRELSTILEGEADLDF 408 (541)
Q Consensus 379 iir~Lc~~l~~e~i~~~l~~il~~~~d~~f 408 (541)
-++++...++.+.++....-.+.-.+|+.+
T Consensus 316 ~~~~~a~~~s~~~l~~~~q~~~~~~~el~~ 345 (700)
T PRK12323 316 DIRRLAGRFDAQEVQLFYQIANLGRSELAL 345 (700)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Confidence 456666777777666666655555555544
No 402
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=22.25 E-value=4e+02 Score=24.91 Aligned_cols=92 Identities=14% Similarity=0.049 Sum_probs=51.0
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcchhhH
Q 009182 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACIAKDLQHF 354 (541)
Q Consensus 277 l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D--~~~~V~~~~~~~L~~i~~~~~~f 354 (541)
.+..++.+.....-.+......++..+..-....|.+ .+..|+- +++.||.-|++.|..++ ++.+
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~-----------AL~LL~~~f~~~~VR~yAv~~L~~~~--d~~l 109 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED-----------ALELLSPNFPDPFVRQYAVRRLESLS--DEEL 109 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH-----------HHHCTSTT---HHHHHHHHHHHCTS---HHHH
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH-----------HHHHHHhhccHHHHHHHHHHHHHHcC--chHH
Confidence 3556666665554444444444444333322222222 2344443 24889999999888754 5678
Q ss_pred HHHHHHHHHhccccchhhhhhHHHHHH
Q 009182 355 RQLVVFLVHNFRVDNSLLEKRGALIIR 381 (541)
Q Consensus 355 ~~~m~~LL~~~~~~~~ll~~r~~~iir 381 (541)
..+++.|.+.++-+......-+.|+++
T Consensus 110 ~~yLpQLVQaLr~e~~~~s~L~~fLl~ 136 (184)
T PF00613_consen 110 LFYLPQLVQALRYEPYHDSPLARFLLR 136 (184)
T ss_dssp HHHHHHHHHHGGGSSSSS-HHHHHHHH
T ss_pred HHHHHHHHHHheeccccccHHHHHHHH
Confidence 888888888887663333344556554
No 403
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=21.75 E-value=7.4e+02 Score=24.01 Aligned_cols=83 Identities=12% Similarity=-0.052 Sum_probs=57.2
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-chhhHHH
Q 009182 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQ 356 (541)
Q Consensus 278 ~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-~~~~f~~ 356 (541)
+..++.......+++...|.+++-+...-.... +....+++..=..|+|+.+-|+...-|+|.+++. .++-+..
T Consensus 117 ~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~-----~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~~~~ 191 (222)
T COG4912 117 PDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT-----LDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNELWVR 191 (222)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHhcCc-----cchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 556666644455555566666665544443333 2344789999899999999999999999999996 5666776
Q ss_pred HHHHHHHhc
Q 009182 357 LVVFLVHNF 365 (541)
Q Consensus 357 ~m~~LL~~~ 365 (541)
.+..=.++-
T Consensus 192 a~~~~~~la 200 (222)
T COG4912 192 AFANAHDLA 200 (222)
T ss_pred HHHHHhhcc
Confidence 666655543
No 404
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.65 E-value=3e+02 Score=25.21 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=36.2
Q ss_pred CCChH---hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhh
Q 009182 274 GFDVG---PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 316 (541)
Q Consensus 274 ~~~l~---~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~ 316 (541)
.|.++ .++|.+...+.+..+.....|+.|+..+.....+.+..
T Consensus 61 ~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~ 106 (164)
T PF13925_consen 61 KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRS 106 (164)
T ss_pred cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35553 68899999999999999999999999999988777654
No 405
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.44 E-value=1.3e+03 Score=26.61 Aligned_cols=186 Identities=16% Similarity=0.222 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHh--hcccchh--c-HhhhHHHHHHHhcC--CCH-HHHHHHHHHHHHhh
Q 009182 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDI--VTESDQF--S-IEEFIPLLRERMNV--LNP-YVRQFLVGWITVLD 142 (541)
Q Consensus 72 ~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi--~~e~~~~--~-l~~~iP~L~e~l~d--~~~-~vR~~a~~~l~~L~ 142 (541)
++.+|++..++-|+++.+|+-| ..+.++-..- .+. +++ . .+.+...+.. +.. .++ .+-++--+....+.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~-~~~~~av~~~l~~~l~~-i~~~~~~~~~~~~fW~g~~~Il~ 196 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD-EEFDWAVLDELSSHLYR-ISPNNYNPDSVIRFWSGFSLILR 196 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch-hhhhHHHHHHHHHHHHH-hccCCCChhHHHHHHHHHHHHHH
Confidence 5677888888889999999999 6666653321 111 111 1 2222222222 211 112 12222222222222
Q ss_pred cCCCchhhhchHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC----CC-ChHHHHHH---------HHH
Q 009182 143 SVPDIDMLGFLPD-----FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP----SV-DYGRMAEI---------LVQ 203 (541)
Q Consensus 143 ~~~~~~l~~~lp~-----~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~----~~-~~~~ii~~---------Ll~ 203 (541)
.+.+..+..++.. +..-+++-+.++..+.-....+++..|++..+... .+ ....+++. ++.
T Consensus 197 ~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~ 276 (727)
T PF12726_consen 197 LLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLL 276 (727)
T ss_pred HccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHH
Confidence 3333334443333 56666677777644555556688888888776432 11 12223321 222
Q ss_pred hcCCCCHHHH----HHHHHHHHHHHh-hcCcCcccchhhHHHHHhhhcCCC-Ch-hHHHHHHH
Q 009182 204 RAASPDEFTR----LTAITWINEFVK-LGGDQLVPYYADILGAILPCISDK-EE-KIRVVARE 259 (541)
Q Consensus 204 ~~~~~~~~vr----~~al~wL~~l~~-~~~~~l~p~l~~llp~ll~~l~d~-~~-~iR~~A~~ 259 (541)
...++++... ...+.|+..+.. +.+..-.+-..+++..++..++++ .+ +.|.++..
T Consensus 277 ~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~~l~~~Ll~~~q~~~~~~~~r~~c~~ 339 (727)
T PF12726_consen 277 QSQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACRKLLHFLLERLQHDRFPDEARAACLR 339 (727)
T ss_pred hhccCCccccchhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 2222222222 235689998854 555555556778888888887763 23 35655544
No 406
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=21.40 E-value=4.9e+02 Score=21.78 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009182 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITV 140 (541)
Q Consensus 72 ~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~ 140 (541)
.++...+.+-+....++-|-++ ..+|.+++.............+.|.+...+...++++|..+...++.
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~i 105 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNI 105 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4666666666665666667777 67777776543332233334447777778888899999877766653
No 407
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=21.38 E-value=9.2e+02 Score=24.97 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=103.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSV 192 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i~~~~~~ 192 (541)
.|+..+...+.+..-+--...+-|+-.+.+....++..+++.|.+ +.++.. +...-|-+.++..+..++. +.+..
T Consensus 195 r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d-li~iVk~~~keKV~Rlc~~Iv~n~~d---K~pK~ 270 (432)
T COG5231 195 RFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND-LIAIVKERAKEKVLRLCCGIVANVLD---KSPKG 270 (432)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc---ccccc
Confidence 455555555555444445556777777776665555555555444 333332 3334454555444444443 22111
Q ss_pred ---------ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC---cccchhhHHHHHhhhcCCCChhHHHHHHHH
Q 009182 193 ---------DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ---LVPYYADILGAILPCISDKEEKIRVVARET 260 (541)
Q Consensus 193 ---------~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~---l~p~l~~llp~ll~~l~d~~~~iR~~A~~~ 260 (541)
+..+-+..+.++--+ |++++.-. .-|.+...-.... +-.|..++-.+++.+-- +-..+-....
T Consensus 271 ~I~~~lll~~~~k~vq~L~erkys-DEel~~di-~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp---~H~~~dFWs~ 345 (432)
T COG5231 271 YIFSPLLLNDISKCVQVLLERKYS-DEELVIDI-ERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSP---YHHKKDFWST 345 (432)
T ss_pred hhhhhHhhcchHHHHHHHHhcCCC-hHHHHHHH-HHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCC---cccccCchhh
Confidence 233334444444332 33333221 1122111111111 11244444444443322 2211112222
Q ss_pred HHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhhChHHHhhhhHH--HHHHHHHhcCCCCHHHH
Q 009182 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATR-IEALHWISTLLNRHRTEVLHFLND--IFDTLLKALSDPSDEVV 337 (541)
Q Consensus 261 ~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R-~aal~wL~~L~~~~~~~i~~~l~~--l~p~Ll~~L~D~~~~V~ 337 (541)
|-.- +.++ -=.++.+|.+.++..+..+- .-|+.=++++.+..|+... .+.. .=..++..++.++++|+
T Consensus 346 N~d~--l~kd------ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~-vl~Kyg~k~~im~L~nh~d~~Vk 416 (432)
T COG5231 346 NLDM--LIKD------NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA-VLSKYGVKEIIMNLINHDDDDVK 416 (432)
T ss_pred hHHH--Hhhh------hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH-HHHHhhhHHHHHHHhcCCCchhh
Confidence 2111 1111 12577888888865433321 1244557788888887653 2222 23467889999999999
Q ss_pred HHHHHHHHHHh
Q 009182 338 LLVLEVHACIA 348 (541)
Q Consensus 338 ~~~~~~L~~i~ 348 (541)
..|++++..+.
T Consensus 417 feAl~a~q~~i 427 (432)
T COG5231 417 FEALQALQTCI 427 (432)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 408
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=21.38 E-value=2.5e+02 Score=25.28 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=55.4
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHH-hhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcch----
Q 009182 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-LHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKDL---- 351 (541)
Q Consensus 279 ~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i-~~~l~--~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~---- 351 (541)
++++.....+..+++...+- .++.+...|++.- ..++- .=+|.++.+++||..++++.++-.+..++.++
T Consensus 58 ~vLdlFvdsl~e~ne~Lvef---gIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r 134 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEF---GIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTER 134 (173)
T ss_pred hHHHHHHHHhhcccHHHHHH---hHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchh
Confidence 56777777777777665544 5667777776543 11211 12578889999999999999999999988433
Q ss_pred -hhHHHHHHHHHHhcc
Q 009182 352 -QHFRQLVVFLVHNFR 366 (541)
Q Consensus 352 -~~f~~~m~~LL~~~~ 366 (541)
.-+.+-+....++++
T Consensus 135 ~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 135 DELLSPAVVRTVQRWR 150 (173)
T ss_pred HHhccHHHHHHHHHHH
Confidence 333344444444444
No 409
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.82 E-value=4.2e+02 Score=30.45 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHhcccc------chh--hhhhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHH
Q 009182 340 VLEVHACIAKDLQHFRQLVVFLVHNFRVD------NSL--LEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFA 409 (541)
Q Consensus 340 ~~~~L~~i~~~~~~f~~~m~~LL~~~~~~------~~l--l~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~ 409 (541)
++..+..+......+..++..|+..+++- ... ......-.++.+...++++.+.....-.+.-..|+.++
T Consensus 264 al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~~~l~~a 341 (709)
T PRK08691 264 LLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLA 341 (709)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Confidence 33444444444445666666666555431 110 01111335667777777777777666666665665553
No 410
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=20.46 E-value=9.9e+02 Score=29.18 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 133 FLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 133 ~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
.++-.+..+.-.+..++..++|.+|-..|-.+....+-||+.|.+.|-.++..+.
T Consensus 935 lalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~l~ 989 (1120)
T PF14228_consen 935 LALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHSLA 989 (1120)
T ss_pred HHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHh
Confidence 3444455555556778889999999999988777789999999999999988764
No 411
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.20 E-value=3.2e+02 Score=25.14 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccch
Q 009182 333 SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 333 ~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ 370 (541)
++.||.-|.+.|...+ +..+..++..|.+.++-+..
T Consensus 91 ~~~VR~yAV~~L~~~s--d~eL~~yL~QLVQaLKyE~~ 126 (166)
T cd00870 91 NPVVRKYAVSRLKLAS--DEELLLYLLQLVQALKYENL 126 (166)
T ss_pred CHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhccc
Confidence 5789999999999865 45677777777777765543
No 412
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=20.08 E-value=3.4e+02 Score=26.54 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 009182 292 WEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (541)
Q Consensus 292 ~~~~R~aal~wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~ 350 (541)
.+..|.+++-.++++.++..+.+..++ -+++|.+++.+...++.-...+.-.++.|-.+
T Consensus 159 fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~d 219 (315)
T COG5209 159 FEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred cceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 344799999999999999998887664 45899999988877776666676777776643
Done!