Query 009182
Match_columns 541
No_of_seqs 256 out of 863
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 3.3E-26 1.1E-30 262.9 42.0 368 29-403 87-495 (852)
2 4fdd_A Transportin-1; heat rep 99.9 4.1E-24 1.4E-28 245.5 42.2 334 28-365 170-535 (852)
3 1b3u_A Protein (protein phosph 99.9 4.1E-25 1.4E-29 241.5 30.4 340 28-380 238-582 (588)
4 1b3u_A Protein (protein phosph 99.9 4.4E-25 1.5E-29 241.2 28.0 348 29-390 161-514 (588)
5 2bpt_A Importin beta-1 subunit 99.9 8.4E-22 2.9E-26 225.2 35.7 374 26-401 405-835 (861)
6 1ibr_B P95, importin beta-1 su 99.9 2.9E-22 1E-26 212.3 28.8 330 30-366 88-461 (462)
7 2bpt_A Importin beta-1 subunit 99.9 9.8E-21 3.4E-25 216.4 42.0 370 27-402 260-691 (861)
8 1u6g_C TIP120 protein, CAND1; 99.9 1.9E-21 6.4E-26 231.7 36.0 391 28-419 82-596 (1230)
9 1qgr_A Protein (importin beta 99.9 1.8E-20 6E-25 214.7 38.7 349 30-386 88-480 (876)
10 1qgr_A Protein (importin beta 99.9 5.2E-20 1.8E-24 210.7 40.6 370 27-401 253-744 (876)
11 1u6g_C TIP120 protein, CAND1; 99.9 2.8E-20 9.7E-25 221.6 37.6 395 26-423 249-723 (1230)
12 1ibr_B P95, importin beta-1 su 99.8 3.9E-17 1.3E-21 172.7 31.7 340 43-389 48-441 (462)
13 2jdq_A Importin alpha-1 subuni 99.8 2.1E-17 7.2E-22 174.5 23.4 349 33-384 21-389 (450)
14 2jdq_A Importin alpha-1 subuni 99.8 1.1E-16 3.7E-21 169.1 25.8 315 32-349 64-390 (450)
15 2vgl_B AP-2 complex subunit be 99.7 1.3E-15 4.3E-20 168.1 32.6 346 28-399 117-472 (591)
16 1wa5_B Importin alpha subunit; 99.7 2.1E-16 7.1E-21 171.7 24.6 315 31-349 129-457 (530)
17 1wa5_B Importin alpha subunit; 99.7 1.2E-16 4.2E-21 173.4 22.2 352 29-385 84-457 (530)
18 2qk2_A LP04448P; mini spindles 99.7 4.1E-16 1.4E-20 152.0 20.7 196 27-270 10-209 (242)
19 4b8j_A Importin subunit alpha- 99.7 1.2E-15 4.3E-20 165.3 25.5 315 32-349 117-443 (528)
20 2vgl_B AP-2 complex subunit be 99.7 3.3E-14 1.1E-18 156.7 35.8 353 27-403 44-402 (591)
21 4b8j_A Importin subunit alpha- 99.7 6.6E-16 2.3E-20 167.4 21.8 312 31-349 73-400 (528)
22 1oyz_A Hypothetical protein YI 99.7 1.6E-15 5.5E-20 150.7 21.4 254 32-346 23-279 (280)
23 2qk2_A LP04448P; mini spindles 99.7 3.3E-15 1.1E-19 145.6 19.0 206 144-359 7-217 (242)
24 2qk1_A Protein STU2; STU2P, XM 99.6 1.8E-14 6.2E-19 141.4 22.0 215 144-361 8-234 (249)
25 1w63_A Adapter-related protein 99.6 4.6E-14 1.6E-18 156.3 26.1 370 27-425 137-544 (618)
26 1oyz_A Hypothetical protein YI 99.6 2.6E-13 8.8E-18 134.6 25.6 237 74-366 24-262 (280)
27 2z6h_A Catenin beta-1, beta-ca 99.6 1E-11 3.5E-16 138.0 40.5 351 29-385 11-382 (644)
28 1wa5_C Importin alpha RE-expor 99.6 1E-12 3.4E-17 152.8 32.0 351 29-386 82-526 (960)
29 1jdh_A Beta-catenin; beta-cate 99.6 1.1E-11 3.9E-16 133.3 37.5 351 28-385 13-385 (529)
30 2qk1_A Protein STU2; STU2P, XM 99.6 1.4E-13 4.8E-18 135.0 19.6 192 79-270 22-224 (249)
31 2z6g_A B-catenin; FULL-length, 99.6 2.7E-12 9.3E-17 145.8 33.0 374 34-422 117-519 (780)
32 2iw3_A Elongation factor 3A; a 99.5 8.3E-13 2.8E-17 150.5 25.1 250 32-290 54-356 (986)
33 3ul1_B Importin subunit alpha- 99.5 1.4E-12 4.8E-17 141.1 25.0 313 33-348 101-429 (510)
34 3ltm_A Alpha-REP4; protein eng 99.5 4.3E-13 1.5E-17 127.3 18.2 183 31-264 18-201 (211)
35 2vgl_A Adaptor protein complex 99.5 2.9E-12 1E-16 141.8 27.2 320 27-368 141-490 (621)
36 3ltj_A Alpharep-4; protein eng 99.5 4.6E-13 1.6E-17 126.1 17.8 186 28-264 10-196 (201)
37 3ul1_B Importin subunit alpha- 99.5 2E-11 6.9E-16 132.0 31.3 382 75-480 59-476 (510)
38 2vgl_A Adaptor protein complex 99.5 2.3E-12 7.8E-17 142.7 23.5 356 30-405 72-455 (621)
39 1w63_A Adapter-related protein 99.5 4.1E-12 1.4E-16 140.7 25.2 346 30-404 68-435 (618)
40 3ltm_A Alpha-REP4; protein eng 99.5 2.7E-12 9.1E-17 121.7 20.1 185 114-349 19-203 (211)
41 3tpo_A Importin subunit alpha- 99.5 9.2E-12 3.1E-16 135.2 26.6 314 32-348 119-448 (529)
42 3ibv_A Exportin-T; karyopherin 99.5 4.1E-12 1.4E-16 147.3 24.4 352 43-401 101-588 (980)
43 3tpo_A Importin subunit alpha- 99.5 8E-11 2.7E-15 127.8 32.4 379 74-480 77-495 (529)
44 2x19_B Importin-13; nuclear tr 99.4 1.9E-11 6.5E-16 141.8 28.9 370 44-423 115-601 (963)
45 3m1i_C Exportin-1; heat repeat 99.4 3.8E-11 1.3E-15 140.8 31.7 333 45-388 113-572 (1049)
46 2z6g_A B-catenin; FULL-length, 99.4 1.4E-11 4.8E-16 140.0 27.1 352 74-435 116-486 (780)
47 2x19_B Importin-13; nuclear tr 99.4 7E-10 2.4E-14 128.6 41.2 364 27-401 485-909 (963)
48 1jdh_A Beta-catenin; beta-cate 99.4 7E-11 2.4E-15 127.1 30.3 309 32-346 101-423 (529)
49 3now_A UNC-45 protein, SD10334 99.4 1.1E-11 3.9E-16 139.2 24.7 377 35-420 333-781 (810)
50 3ltj_A Alpharep-4; protein eng 99.4 1.3E-11 4.3E-16 116.1 20.8 185 113-348 13-197 (201)
51 3now_A UNC-45 protein, SD10334 99.4 1.3E-11 4.4E-16 138.8 22.5 313 30-350 375-738 (810)
52 2x1g_F Cadmus; transport prote 99.4 1.4E-10 4.9E-15 134.7 31.4 364 27-401 500-921 (971)
53 4hxt_A De novo protein OR329; 99.4 3E-11 1E-15 116.7 21.0 236 33-268 3-243 (252)
54 2x1g_F Cadmus; transport prote 99.4 1.2E-10 4.3E-15 135.2 29.7 352 27-389 343-764 (971)
55 2z6h_A Catenin beta-1, beta-ca 99.4 1.3E-10 4.5E-15 129.1 27.4 373 115-505 15-408 (644)
56 1wa5_C Importin alpha RE-expor 99.3 2.2E-10 7.6E-15 133.0 29.4 324 30-368 397-773 (960)
57 4hxt_A De novo protein OR329; 99.3 2.7E-11 9.1E-16 117.0 13.8 230 116-349 4-241 (252)
58 4db8_A Armadillo-repeat protei 99.3 8.5E-11 2.9E-15 114.1 16.7 233 32-264 12-249 (252)
59 4db8_A Armadillo-repeat protei 99.2 2.2E-10 7.5E-15 111.1 16.9 233 74-349 13-251 (252)
60 4hat_C Exportin-1; heat repeat 99.2 5.2E-08 1.8E-12 113.2 38.7 349 30-388 136-572 (1023)
61 1xm9_A Plakophilin 1; armadill 99.2 2.6E-09 8.7E-14 113.8 23.8 309 33-350 3-407 (457)
62 3l6x_A Catenin delta-1; cateni 99.2 5E-08 1.7E-12 106.1 33.4 327 28-367 44-456 (584)
63 4db6_A Armadillo repeat protei 99.1 3.8E-10 1.3E-14 106.4 13.9 195 30-224 10-208 (210)
64 2iw3_A Elongation factor 3A; a 99.1 1E-08 3.6E-13 117.0 26.4 254 86-346 28-321 (986)
65 3nmz_A APC variant protein; pr 99.0 1.4E-08 4.8E-13 107.8 22.1 310 32-349 70-450 (458)
66 3ibv_A Exportin-T; karyopherin 99.0 1.6E-07 5.6E-12 108.8 32.2 334 28-366 328-752 (980)
67 4db6_A Armadillo repeat protei 99.0 1.4E-08 4.6E-13 95.6 17.1 192 73-264 12-207 (210)
68 3a6p_A Exportin-5; exportin-5, 99.0 2.1E-07 7.2E-12 110.4 31.0 355 44-404 108-638 (1204)
69 1xm9_A Plakophilin 1; armadill 99.0 4E-08 1.4E-12 104.6 22.4 272 75-350 4-361 (457)
70 3m1i_C Exportin-1; heat repeat 99.0 4.8E-06 1.6E-10 97.5 41.9 295 27-326 339-694 (1049)
71 2of3_A ZYG-9; multifunctional 98.9 3.2E-07 1.1E-11 89.8 23.5 189 33-270 47-240 (266)
72 3gjx_A Exportin-1; transport, 98.9 4.7E-06 1.6E-10 96.8 36.1 334 44-388 124-598 (1073)
73 4ffb_C Protein STU2; tubulin f 98.8 1.8E-07 6.2E-12 92.6 18.5 187 79-270 15-216 (278)
74 3l6x_A Catenin delta-1; cateni 98.8 1.8E-06 6.3E-11 93.9 27.6 312 32-349 90-476 (584)
75 2db0_A 253AA long hypothetical 98.8 6.7E-07 2.3E-11 81.1 19.5 207 151-375 28-236 (253)
76 4ffb_C Protein STU2; tubulin f 98.8 1.5E-07 5.3E-12 93.1 16.1 189 37-230 14-217 (278)
77 4hat_C Exportin-1; heat repeat 98.7 3.7E-05 1.3E-09 89.4 38.3 355 34-389 346-793 (1023)
78 3nmz_A APC variant protein; pr 98.7 3.1E-07 1E-11 97.5 19.1 346 34-386 34-451 (458)
79 2db0_A 253AA long hypothetical 98.7 2.5E-06 8.4E-11 77.4 21.6 216 27-264 27-244 (253)
80 4ady_A RPN2, 26S proteasome re 98.7 5.4E-06 1.9E-10 93.8 28.0 288 31-367 391-699 (963)
81 1xqr_A HSPBP1 protein; armadil 98.7 9.7E-07 3.3E-11 88.3 19.7 187 32-221 81-283 (296)
82 4ady_A RPN2, 26S proteasome re 98.7 4.3E-06 1.5E-10 94.6 26.6 276 33-348 430-718 (963)
83 3nmw_A APC variant protein; AR 98.7 4.6E-07 1.6E-11 93.0 16.7 222 126-349 96-334 (354)
84 1te4_A Conserved protein MTH18 98.6 3.9E-09 1.3E-13 92.4 -0.8 121 29-181 9-130 (131)
85 3tjz_B Coatomer subunit gamma; 98.6 2.7E-07 9.1E-12 94.3 12.4 281 32-345 68-349 (355)
86 3opb_A SWI5-dependent HO expre 98.6 2.6E-05 9.1E-10 86.5 28.3 370 35-416 299-773 (778)
87 1xqr_A HSPBP1 protein; armadil 98.5 1.8E-06 6.2E-11 86.3 17.1 229 33-264 29-285 (296)
88 2of3_A ZYG-9; multifunctional 98.5 5.3E-06 1.8E-10 81.1 19.9 193 116-319 48-247 (266)
89 3nmw_A APC variant protein; AR 98.5 7.7E-07 2.6E-11 91.4 14.3 233 33-266 74-334 (354)
90 1lrv_A LRV, leucine-rich repea 98.5 1.2E-08 4.1E-13 99.1 0.2 185 38-344 56-241 (244)
91 3opb_A SWI5-dependent HO expre 98.5 2.9E-05 1E-09 86.1 26.5 315 31-348 333-727 (778)
92 3b2a_A TON_1937, putative unch 98.5 6E-05 2.1E-09 71.2 24.5 220 33-264 34-259 (265)
93 3oc3_A Helicase MOT1, MOT1; re 98.3 3.6E-06 1.2E-10 88.5 13.4 218 109-348 170-403 (800)
94 3oc3_A Helicase MOT1, MOT1; re 98.3 4.2E-06 1.4E-10 88.0 13.8 239 33-303 175-431 (800)
95 3gjx_A Exportin-1; transport, 98.3 0.00027 9.3E-09 82.1 30.1 393 17-435 551-1019(1073)
96 3tjz_B Coatomer subunit gamma; 98.3 2.1E-05 7E-10 80.3 18.0 301 33-370 27-338 (355)
97 1lrv_A LRV, leucine-rich repea 98.3 1.6E-07 5.5E-12 91.1 2.1 164 36-304 78-242 (244)
98 3b2a_A TON_1937, putative unch 98.2 0.00027 9.2E-09 66.8 22.1 218 116-344 35-256 (265)
99 1te4_A Conserved protein MTH18 98.2 2E-06 6.8E-11 74.9 6.5 86 34-140 44-130 (131)
100 3a6p_A Exportin-5; exportin-5, 97.9 0.0031 1.1E-07 74.7 27.5 327 33-367 250-682 (1204)
101 3grl_A General vesicular trans 97.8 0.032 1.1E-06 60.5 31.3 231 114-351 122-396 (651)
102 3l9t_A Putative uncharacterize 97.8 0.0011 3.8E-08 63.0 17.5 137 29-183 68-206 (240)
103 1vsy_5 Proteasome activator BL 97.5 0.00016 5.5E-09 83.5 9.5 319 27-365 503-892 (997)
104 3l9t_A Putative uncharacterize 97.4 0.0074 2.5E-07 57.3 17.3 137 111-264 68-205 (240)
105 3tt9_A Plakophilin-2; cell adh 97.0 0.0052 1.8E-07 58.8 12.2 144 31-183 7-179 (233)
106 3tt9_A Plakophilin-2; cell adh 97.0 0.0033 1.1E-07 60.2 10.6 188 196-388 8-232 (233)
107 4gmo_A Putative uncharacterize 96.9 0.00095 3.3E-08 74.4 6.9 151 34-184 36-214 (684)
108 3gs3_A Symplekin, LD45768P; he 96.8 0.41 1.4E-05 46.2 25.9 196 129-360 30-255 (257)
109 3u0r_A Apoptosis inhibitor 5; 96.8 0.67 2.3E-05 48.3 27.8 270 73-366 29-322 (507)
110 1vsy_5 Proteasome activator BL 96.7 0.0064 2.2E-07 70.2 12.0 195 67-270 753-970 (997)
111 3grl_A General vesicular trans 96.5 0.12 4.2E-06 56.0 19.1 171 194-370 19-222 (651)
112 3u0r_A Apoptosis inhibitor 5; 96.3 0.71 2.4E-05 48.1 22.7 264 45-333 41-325 (507)
113 4atg_A TAF6; transcription, TF 96.1 0.2 6.8E-06 46.2 15.8 142 64-223 6-160 (196)
114 3o2t_A Symplekin; heat repeat, 96.1 1.4 4.9E-05 44.9 31.0 236 151-428 59-328 (386)
115 1upk_A MO25 protein; transfera 96.1 0.18 6.1E-06 50.3 16.1 224 155-386 78-333 (341)
116 4atg_A TAF6; transcription, TF 96.0 0.1 3.6E-06 48.1 13.2 151 147-314 7-168 (196)
117 4gmo_A Putative uncharacterize 95.8 0.11 3.7E-06 57.7 15.1 71 114-185 35-106 (684)
118 1w9c_A CRM1 protein, exportin 95.2 1 3.5E-05 44.7 17.8 194 234-435 70-311 (321)
119 3gs3_A Symplekin, LD45768P; he 94.9 2.8 9.5E-05 40.3 25.2 113 109-225 48-173 (257)
120 3o2t_A Symplekin; heat repeat, 93.7 6.8 0.00023 39.9 25.6 221 16-246 46-320 (386)
121 1w9c_A CRM1 protein, exportin 93.4 6.7 0.00023 38.8 19.5 181 129-309 44-249 (321)
122 1lsh_A Lipovitellin (LV-1N, LV 93.2 13 0.00044 43.1 24.4 168 155-349 391-576 (1056)
123 1upk_A MO25 protein; transfera 91.4 12 0.00042 37.1 19.8 191 29-226 75-284 (341)
124 1vsy_4 Proteasome activator BL 90.2 20 0.00069 40.1 20.9 112 27-143 334-455 (799)
125 2bnx_A Diaphanous protein homo 88.9 12 0.00039 38.2 16.4 120 294-435 73-197 (386)
126 3eg5_B Protein diaphanous homo 88.5 9.4 0.00032 38.8 15.4 121 293-435 134-259 (383)
127 3ldz_A STAM-1, signal transduc 86.1 5.4 0.00019 34.4 10.2 76 114-189 42-119 (140)
128 3ebb_A Phospholipase A2-activa 86.1 27 0.00092 34.2 17.1 152 280-433 104-275 (304)
129 2npp_B PP2A, B subunit, serine 86.1 33 0.0011 35.5 17.8 69 195-267 325-400 (449)
130 3jxy_A Alkylpurine DNA glycosy 85.7 7 0.00024 36.7 11.7 170 153-349 25-195 (232)
131 3fga_B Serine/threonine-protei 85.6 34 0.0012 34.9 17.4 216 114-361 129-379 (403)
132 3fga_B Serine/threonine-protei 85.4 34 0.0012 34.8 19.0 227 27-267 123-367 (403)
133 3jxy_A Alkylpurine DNA glycosy 83.3 17 0.00057 34.0 13.2 195 10-235 7-205 (232)
134 1x5b_A Signal transducing adap 82.8 4.8 0.00017 35.7 8.6 76 113-188 51-129 (163)
135 3ldz_A STAM-1, signal transduc 82.6 15 0.00053 31.5 11.6 83 17-99 27-112 (140)
136 2f31_A Diaphanous protein homo 82.0 10 0.00034 35.6 11.0 120 294-435 69-193 (233)
137 1x5b_A Signal transducing adap 79.6 9.9 0.00034 33.7 9.5 80 17-96 37-120 (163)
138 3g2s_A C-terminal fragment of 79.4 9.8 0.00033 33.2 9.2 76 113-188 47-130 (149)
139 1mhq_A ADP-ribosylation factor 79.3 15 0.0005 32.0 10.3 80 17-96 23-111 (148)
140 3g2s_A C-terminal fragment of 78.0 20 0.00067 31.2 10.7 81 17-97 33-122 (149)
141 2npp_B PP2A, B subunit, serine 75.0 81 0.0028 32.6 17.3 217 113-361 161-412 (449)
142 2b6c_A Hypothetical protein EF 74.7 20 0.00067 33.3 10.5 160 162-349 28-188 (220)
143 1mhq_A ADP-ribosylation factor 73.9 12 0.00042 32.5 8.3 72 116-187 40-119 (148)
144 1juq_A ADP-ribosylation factor 73.8 23 0.00079 31.5 10.3 81 17-97 35-124 (171)
145 1lsh_A Lipovitellin (LV-1N, LV 72.8 1.4E+02 0.0049 34.4 26.3 185 235-432 389-588 (1056)
146 3eg5_B Protein diaphanous homo 71.9 23 0.00078 35.9 11.0 33 278-310 161-193 (383)
147 2b6c_A Hypothetical protein EF 69.0 41 0.0014 31.0 11.3 137 78-235 60-198 (220)
148 1elk_A Target of MYB1; superhe 68.6 22 0.00074 31.2 8.7 76 113-188 52-134 (157)
149 1vdy_A Hypothetical protein (R 68.0 11 0.00038 32.5 6.4 71 194-264 47-128 (140)
150 1vdy_A Hypothetical protein (R 67.1 13 0.00045 32.0 6.7 88 6-99 29-127 (140)
151 2fv2_A RCD1 required for cell 66.7 84 0.0029 29.9 12.7 67 282-348 104-173 (268)
152 1elk_A Target of MYB1; superhe 65.6 35 0.0012 29.8 9.5 82 17-98 38-127 (157)
153 1dvp_A HRS, hepatocyte growth 64.9 36 0.0012 31.4 10.0 77 113-189 41-120 (220)
154 3dad_A FH1/FH2 domain-containi 64.8 72 0.0025 31.6 12.4 104 35-141 163-284 (339)
155 3zyq_A Hepatocyte growth facto 64.4 82 0.0028 29.2 12.4 85 17-101 30-118 (226)
156 1dvp_A HRS, hepatocyte growth 63.5 77 0.0026 29.1 12.0 82 17-98 27-112 (220)
157 3s4w_B Protein FACD2, fanconi 60.4 2.6E+02 0.009 32.9 25.5 114 230-348 393-506 (1323)
158 3bqo_A Telomeric repeat-bindin 55.6 1.2E+02 0.0042 27.6 11.4 121 354-530 44-180 (211)
159 2fv2_A RCD1 required for cell 54.0 1.5E+02 0.0052 28.2 12.6 55 210-264 116-172 (268)
160 1juq_A ADP-ribosylation factor 53.7 1.2E+02 0.004 26.8 11.7 71 278-348 49-127 (171)
161 3vld_A DNA mismatch repair pro 50.9 54 0.0019 34.1 9.1 160 317-514 279-458 (500)
162 3zyq_A Hepatocyte growth facto 50.4 39 0.0013 31.4 7.5 76 113-188 44-122 (226)
163 3s4w_B Protein FACD2, fanconi 49.2 3.9E+02 0.013 31.5 20.7 175 124-304 355-546 (1323)
164 3ebb_A Phospholipase A2-activa 48.5 1.9E+02 0.0065 28.0 12.4 114 31-144 146-264 (304)
165 4flb_A Regulation of nuclear P 47.2 1.1E+02 0.0036 25.5 9.2 89 235-333 6-98 (132)
166 1ho8_A Vacuolar ATP synthase s 44.9 2.9E+02 0.0098 28.7 14.7 57 208-265 417-475 (480)
167 1vsy_4 Proteasome activator BL 39.9 4.3E+02 0.015 29.3 27.7 173 133-308 252-455 (799)
168 3ut4_A CTHE_2751, putative unc 35.0 1.3E+02 0.0044 25.6 7.5 110 138-264 18-128 (134)
169 2bnx_A Diaphanous protein homo 31.9 3.1E+02 0.011 27.4 11.4 34 278-311 99-132 (386)
170 3rru_A TOM1L1 protein; structu 31.5 1.3E+02 0.0044 26.0 7.3 91 3-93 11-121 (152)
171 3l6a_A Eukaryotic translation 31.4 1.8E+02 0.0063 28.9 9.4 106 340-455 31-150 (364)
172 3d9j_A RNA-binding protein 16; 29.5 84 0.0029 26.9 5.7 93 163-259 13-112 (145)
173 1t06_A Hypothetical protein; s 27.1 1.3E+02 0.0046 27.8 7.1 80 280-359 109-191 (235)
174 2a9i_A IRAK-4, interleukin-1 r 26.2 80 0.0028 25.9 4.7 33 376-408 15-48 (113)
175 2qsb_A UPF0147 protein TA0600; 25.6 2.4E+02 0.0082 22.0 7.6 69 71-141 12-85 (89)
176 3rru_A TOM1L1 protein; structu 23.8 1.6E+02 0.0055 25.4 6.5 76 114-189 53-135 (152)
177 1ho8_A Vacuolar ATP synthase s 21.4 1.1E+02 0.0038 31.8 5.6 56 44-100 417-475 (480)
178 2qzg_A Conserved uncharacteriz 21.4 3E+02 0.01 21.7 8.2 73 69-143 14-91 (94)
179 2x6h_A GH13170P, VPS34, phosph 21.3 1.2E+02 0.0039 33.3 6.0 32 126-160 121-152 (696)
180 2g7r_A Mucosa-associated lymph 21.0 1.5E+02 0.0051 24.4 5.2 23 470-492 77-99 (117)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.96 E-value=3.3e-26 Score=262.87 Aligned_cols=368 Identities=16% Similarity=0.177 Sum_probs=309.2
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
....|.+.++++++|+++.||..++.++..|++.- ....|+++++.|.+.++++++.+|++| ..|..++++.....
T Consensus 87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKG---ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc---CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 34567788999999999999999999999998764 235689999999999999999999999 88999988765421
Q ss_pred c----hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 108 D----QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 108 ~----~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
+ ...++.++|.+.+.+.++++.||..++.+++.+....+..+..+++.+++.+++.+.|++++||..++.+++.+.
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 1 233788999999999999999999999999988877777788899999999999999999999999999999998
Q ss_pred HHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--cCcCcccchhhHHHHHhhhcC-----------C--
Q 009182 184 QEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPYYADILGAILPCIS-----------D-- 248 (541)
Q Consensus 184 ~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~--~~~~l~p~l~~llp~ll~~l~-----------d-- 248 (541)
+..+....++++.+++.++...++.++.+|..|++++..+++. ....+.||+++++|.+++.|. |
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ 323 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence 7654333456889999999999999999999999777766652 123357899999999999983 3
Q ss_pred ---------CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhH
Q 009182 249 ---------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (541)
Q Consensus 249 ---------~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~ 319 (541)
.+.++|..|.++.+.+.+..++ .-++.+++.+.+.+.+++|..|.+|+.+++.+++++++.+.++++
T Consensus 324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~ 399 (852)
T 4fdd_A 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP 399 (852)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 2235788999999888776653 235788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc------chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh----
Q 009182 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA---- 389 (541)
Q Consensus 320 ~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~------~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~---- 389 (541)
.++|.+++.++|+++.||..++|+++++++ ...|+.++++.+++.+.+++..++..+...+.++|...+.
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~ 479 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 479 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh
Confidence 999999999999999999999999999984 3578999999999999877777777888888888877665
Q ss_pred --hhHHHHHHHHhccc
Q 009182 390 --ERVYRELSTILEGE 403 (541)
Q Consensus 390 --e~i~~~l~~il~~~ 403 (541)
+.+...+..++...
T Consensus 480 ~l~~ll~~L~~~l~~~ 495 (852)
T 4fdd_A 480 YLAYILDTLVFAFSKY 495 (852)
T ss_dssp GHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 35555666666543
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.94 E-value=4.1e-24 Score=245.49 Aligned_cols=334 Identities=16% Similarity=0.225 Sum_probs=278.6
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
.+++.++|.++++++|+++.||.+|+.++.++++...+....+++++++.+.++++|++++||.+| .+|.++++.....
T Consensus 170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~ 249 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249 (852)
T ss_dssp SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 347788999999999999999999999998877554455567778999999999999999999999 8888877633221
Q ss_pred cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC--chhhhchHHHHHHHHHHc-----------CC-------
Q 009182 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNML-----------SD------- 166 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~--~~l~~~lp~~L~~L~~lL-----------~D------- 166 (541)
- ...++.++|.+...+.+.++.||..+++.+..+.+... ..+.++++.+++.+++.+ .|
T Consensus 250 ~-~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 250 L-LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp H-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred H-HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 1 12467789999999999999999999999988876432 225578889999998888 45
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHH
Q 009182 167 ----SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (541)
Q Consensus 167 ----~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~l 242 (541)
.+..||+.+..+++.+....+. .-++.++|.+.+.+++++|.+|.+|+.+++.+++..+..+.+|++.++|.+
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l 405 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3345799999999999987762 336889999999999999999999999999998887777889999999999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHH
Q 009182 243 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (541)
Q Consensus 243 l~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~ 322 (541)
++.+.|+++.||.+|..+.+.+.+..........+.++++.+.+.+.+++..+|.+|..++..+.+.++..+.||++.++
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll 485 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYIL 485 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHH
Confidence 99999999999999999999887765432223457899999999999989999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHh-------cchhhHHHHHHHHHHhc
Q 009182 323 DTLLKALSDPSDEVVLLVLEVHACIA-------KDLQHFRQLVVFLVHNF 365 (541)
Q Consensus 323 p~Ll~~L~D~~~~V~~~~~~~L~~i~-------~~~~~f~~~m~~LL~~~ 365 (541)
+.+++.+++.+......+.++++.++ ..++|++.+|+.+++.+
T Consensus 486 ~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 486 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 99999999887777667777777776 23569999999999644
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.94 E-value=4.1e-25 Score=241.49 Aligned_cols=340 Identities=17% Similarity=0.195 Sum_probs=274.6
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
.+.+.++|.+...++|++|+||++|++++..++...+++. +.++++|.+.+++.|++++||.+| .++.++++....+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 4556688888999999999999999999999998765443 346789999999999999999999 8888887744322
Q ss_pred c-chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 107 S-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 107 ~-~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
. ....++.++|.+.+.++|+++.||..++.+++.+....+.+. ..+.+++.+..+++|++++||..+..+++.+.+.
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 1 013478899999999999999999999999999987766543 3577888888899999999999999999999877
Q ss_pred hcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 186 i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
++.. ...+.++|.+.+..++++|.+|..++.+++.++...|... +.+.++|.+++.+.|+++++|+.|..+.+.+.
T Consensus 394 ~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 394 IGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp SCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 6421 1247799999999999999999999999999988766654 45789999999999999999999999999988
Q ss_pred HhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009182 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (541)
Q Consensus 266 ~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~ 345 (541)
+.++.. +..+.++|.+.....++++.+|.+++.+++.+++.++.+. +.+.++|.+++.++|++++||..++++++
T Consensus 470 ~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 470 EKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544 (588)
T ss_dssp HHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHH
Confidence 776532 2356888999888888999999999999999999877654 78899999999999999999999999999
Q ss_pred HHhc--chhhHH-HHHHHHHHhccccchhhhhhHHHHH
Q 009182 346 CIAK--DLQHFR-QLVVFLVHNFRVDNSLLEKRGALII 380 (541)
Q Consensus 346 ~i~~--~~~~f~-~~m~~LL~~~~~~~~ll~~r~~~ii 380 (541)
.++. ++.++. .+++.+.++..+...-++..+...+
T Consensus 545 ~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al 582 (588)
T 1b3u_A 545 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582 (588)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 9994 344443 4555555544444443443333333
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.94 E-value=4.4e-25 Score=241.24 Aligned_cols=348 Identities=14% Similarity=0.107 Sum_probs=283.1
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
..+.++|.+...++|+++.||.+|++++..+++..+++ .+.+.++|.+.++++|++..||.+| .++..+.+....
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-- 236 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-- 236 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--
Confidence 45667788888899999999999999999999877654 2457889999999999999999999 888887764322
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
....+.++|.+...+.|+++.||..++.+++.+....+.+ .+.+.+++.+.+++.|++++||..|..+++.+...++
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 2335678999999999999999999999999998765443 2467788889999999999999999999999988665
Q ss_pred CCCC--CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 188 NSPS--VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 188 ~~~~--~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
.... ...+.++|.+...++++++.+|.+++.+++.++...|... +.+.++|.+...+.|.++++|..|.++.+.+.
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 2211 2367899999999999999999999999999888766543 46889999999999999999999998888876
Q ss_pred HhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009182 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (541)
Q Consensus 266 ~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~ 345 (541)
+.++.. ...+.++|.+.+.+.+.+|.+|.+++.+++.+.+..+.+. +.+.++|.+++.|+|++++||..++.+++
T Consensus 392 ~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 392 EVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLK 466 (588)
T ss_dssp HHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 654321 1136788999998999999999999999999998876654 45789999999999999999999999999
Q ss_pred HHhc---chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChh
Q 009182 346 CIAK---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE 390 (541)
Q Consensus 346 ~i~~---~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e 390 (541)
.+.. .+.+++.+++.+.+...+.+...+..+...+..++..+|.+
T Consensus 467 ~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~ 514 (588)
T 1b3u_A 467 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD 514 (588)
T ss_dssp HHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH
Confidence 9883 33456788888888777665555555556777777766654
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.91 E-value=8.4e-22 Score=225.22 Aligned_cols=374 Identities=12% Similarity=0.102 Sum_probs=299.4
Q ss_pred hhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhH
Q 009182 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD 102 (541)
Q Consensus 26 ~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~--~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kd 102 (541)
..+|++.++|.+++.+.|+++.||.+|+.++..+++..+..+ ..+++.++|.+.+.+.|+ +.||.+| .++..+++.
T Consensus 405 ~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence 357888999999999999999999999999999998876543 467899999999999887 9999988 888888876
Q ss_pred hhc---ccchhcHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCC-----------
Q 009182 103 IVT---ESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD----------- 166 (541)
Q Consensus 103 i~~---e~~~~~l~~~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D----------- 166 (541)
... +.-...++.++|.+...+.+ .++.+|..+++.++.+....+.+..+|++.+++.+++.+.+
T Consensus 484 ~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~ 563 (861)
T 2bpt_A 484 LAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTL 563 (861)
T ss_dssp HSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCCh
Confidence 531 11123467788888888874 44899999999999999988888888999988888877653
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccchhhHHHH
Q 009182 167 ----SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGA 241 (541)
Q Consensus 167 ----~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~-~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ 241 (541)
...++|..+..+++.+++.++....++.+.+++.++..+++.++ .+|..++.+++.++...+..+.||+++++|.
T Consensus 564 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 643 (861)
T 2bpt_A 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 25678999999999999988865456788999999998888777 8999999999999999999999999999999
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhChHHHhhhhH
Q 009182 242 ILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVLHFLN 319 (541)
Q Consensus 242 ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~--~~~R~aal~wL~~L~~~~~~~i~~~l~ 319 (541)
++..+.++++++|..|..+.+.+.+.++.. -....+.+++.+.+.+.+++ ..+|.+++.+++.++...++.+.+|++
T Consensus 644 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~ 722 (861)
T 2bpt_A 644 LLKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN 722 (861)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHTGGG-GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHhchh-ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999998889999999999988887766531 00124678888888887654 779999999999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHhcc----hhhH----HHHHHHHHHhcccc----chhhhhhH
Q 009182 320 DIFDTLLKALSDPS-----------DEVVLLVLEVHACIAKD----LQHF----RQLVVFLVHNFRVD----NSLLEKRG 376 (541)
Q Consensus 320 ~l~p~Ll~~L~D~~-----------~~V~~~~~~~L~~i~~~----~~~f----~~~m~~LL~~~~~~----~~ll~~r~ 376 (541)
.++|.+++.+..+. ..+|..+++++..+... ...| ..+++.+.+...+. ...+...+
T Consensus 723 ~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a 802 (861)
T 2bpt_A 723 DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAA 802 (861)
T ss_dssp HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 99999999988431 45788999999988721 1334 44444444444431 44566667
Q ss_pred HHHHHHhhccC-Chh-------hHHHHHHHHhc
Q 009182 377 ALIIRRLCVLL-DAE-------RVYRELSTILE 401 (541)
Q Consensus 377 ~~iir~Lc~~l-~~e-------~i~~~l~~il~ 401 (541)
...+..||..+ |++ .+++.+-+.+.
T Consensus 803 ~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 803 VGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp HHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHh
Confidence 77889999888 653 56666666666
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.91 E-value=2.9e-22 Score=212.25 Aligned_cols=330 Identities=12% Similarity=0.039 Sum_probs=264.3
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCC--CHHHHHHH-HHHHHHHhHhhcc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~--d~~VR~~A-~~L~~l~kdi~~e 106 (541)
...|...++..+.++++.+ ..++.++..|++...+. ..|++++|.|.+.++|+ ++++|.+| ..+..++++...+
T Consensus 88 ~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (462)
T 1ibr_B 88 RREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCch
Confidence 3456677889999999999 99999999998764322 35789999999999888 99999999 8888888865322
Q ss_pred cchhcHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCCchhhh--chHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~--~~~vR~~a~~~l~~L~~~~~~~l~~--~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~l 182 (541)
.-....+.++|.+...+.++ ++.||..++.+++.+....+..+.. ..+.+++.+...+.|++.+||..++.++..+
T Consensus 165 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 22334677899999999997 7999999999998865443222111 1233567777888999999999999999999
Q ss_pred HHHhcCCCCCChH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc---------------------CcCcccchhhHHH
Q 009182 183 LQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG---------------------GDQLVPYYADILG 240 (541)
Q Consensus 183 l~~i~~~~~~~~~-~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~---------------------~~~l~p~l~~llp 240 (541)
.........++++ .+++.++..+++.++.+|..|+..+..+++.. ...+.+|++.++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 9877654456778 99999999999999999999998777776542 1122356799999
Q ss_pred HHhhhcCCC-------ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh-H
Q 009182 241 AILPCISDK-------EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-T 312 (541)
Q Consensus 241 ~ll~~l~d~-------~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~-~ 312 (541)
.+++.+.+. +..+|..|..+.+.+.+..++ .-++.+++.+.+.+.+++|..|.+|+..++.+++++. +
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH
Confidence 999988653 347899999999988777652 2357889999999999999999999999999999876 5
Q ss_pred HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-------chhhHHHHHHHHHHhcc
Q 009182 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 313 ~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-------~~~~f~~~m~~LL~~~~ 366 (541)
.+.++++.++|.+++.|+|+++.||..++|+++++++ ..+|++++++.|++.++
T Consensus 401 ~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999999999999993 24789999999987664
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.90 E-value=9.8e-21 Score=216.36 Aligned_cols=370 Identities=11% Similarity=0.139 Sum_probs=290.2
Q ss_pred hhhhc-chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-----------------hhhhhHHHHHHHHHHHhhcCC---
Q 009182 27 ETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-----------------GDFIIFFNQIFDALCKLSADS--- 85 (541)
Q Consensus 27 ~~~l~-~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~-----------------~~~~~~~~~i~~~L~kl~~D~--- 85 (541)
.+|+. .+++.+..+++|++.+||..|++.+..+++... ....+++..++|.+.+.+.++
T Consensus 260 ~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d 339 (861)
T 2bpt_A 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339 (861)
T ss_dssp HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46777 888999999999999999999999998887631 112356688999998877643
Q ss_pred ----CHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-chhhhchHHHHHH
Q 009182 86 ----DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDG 159 (541)
Q Consensus 86 ----d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~-~~l~~~lp~~L~~ 159 (541)
+.++|.+| ..|+.+..... ...++.++|.+.+.+.+.++.+|..++..++.+....+ ..+.++++.+++.
T Consensus 340 ~~d~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~ 415 (861)
T 2bpt_A 340 PEDDDWNVSMSAGACLQLFAQNCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPS 415 (861)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHHHHHHHHcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35899888 88888776443 34577889999999999999999999999999998765 6677899999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC----cCccc
Q 009182 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG----DQLVP 233 (541)
Q Consensus 160 L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~--~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~----~~l~p 233 (541)
+++.+.|+++.||..++.+++.+...++.. +..+++.++|.++..++++ +.+|..|+..+..+++..+ ..+.|
T Consensus 416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 999999999999999999999999887643 2456899999999999886 9999999999998888654 66889
Q ss_pred chhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC---------------CCHHHH
Q 009182 234 YYADILGAILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS---------------EWEATR 296 (541)
Q Consensus 234 ~l~~llp~ll~~l~d--~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~---------------~~~~~R 296 (541)
|++.+++.+++.+.+ .++++|..+.++.+.+.+..+.. ....++.++|.+.+.+.+ +....|
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 573 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence 999999999999984 45889999999998887654421 001134566666655532 134478
Q ss_pred HHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhc-----chhhHHHHHHHHHHhccccch
Q 009182 297 IEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 297 ~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~-~V~~~~~~~L~~i~~-----~~~~f~~~m~~LL~~~~~~~~ 370 (541)
..++.+++.+....+.++.|+.+.++|.+++.+++.++ .++..++++++.++. ..+|+..+++.+++.+.++..
T Consensus 574 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~ 653 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDS 653 (861)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccH
Confidence 89999999999999999999999999999999998877 899999999988872 346888999999998865443
Q ss_pred hhhhhHHHHHHHhhccCCh------hhHHHHHHHHhcc
Q 009182 371 LLEKRGALIIRRLCVLLDA------ERVYRELSTILEG 402 (541)
Q Consensus 371 ll~~r~~~iir~Lc~~l~~------e~i~~~l~~il~~ 402 (541)
-....+-..+..++..+|. +.+.+.+.+.+.+
T Consensus 654 ~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 691 (861)
T 2bpt_A 654 PVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691 (861)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCC
Confidence 3334444456666666653 2444444444544
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.90 E-value=1.9e-21 Score=231.73 Aligned_cols=391 Identities=13% Similarity=0.113 Sum_probs=296.6
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchh------hhhHHHHHHHHHHHhhcC-CCHHHHHHH-HHHHHH
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD------FIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRL 99 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~------~~~~~~~i~~~L~kl~~D-~d~~VR~~A-~~L~~l 99 (541)
++++.+++.++.++.|++..||.+|+.++..++....+. ...+|++++|.|.+.+.| ++..+|.+| ..+..+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999877544 346899999999999984 889999999 888888
Q ss_pred HhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----------------------------------
Q 009182 100 VKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP---------------------------------- 145 (541)
Q Consensus 100 ~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~---------------------------------- 145 (541)
++.....-. ..++.+++.+...+.++++.||..++.+++.+....
T Consensus 162 ~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 162 LSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp HHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 764432211 135667777777777777788887777766654332
Q ss_pred -----CchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC-------------
Q 009182 146 -----DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS------------- 207 (541)
Q Consensus 146 -----~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~------------- 207 (541)
+..+.+|++.+++.+++.+.|.+++||..+..+++.+.+..+....++++.++|.+++.+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~ 320 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 23344688889999999999999999999999999999876644344678888888765531
Q ss_pred ------------------------CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 009182 208 ------------------------PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (541)
Q Consensus 208 ------------------------~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~ 263 (541)
..|.+|..|+..++.++...|..+.+|+++++|.+...+.|.++++|..+.++.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400 (1230)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred ccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 12568999999999999877777889999999999999999999999999988888
Q ss_pred HHHhhcCCC------C------------CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHH
Q 009182 264 LRAIKADPA------D------------GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 325 (541)
Q Consensus 264 L~~~i~~~~------~------------~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~L 325 (541)
+.+..+... . ...++.+++.+.+.+.++++.+|.+++.+++.+...+++.+.+|++.++|.+
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l 480 (1230)
T 1u6g_C 401 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480 (1230)
T ss_dssp HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHH
T ss_pred HHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHH
Confidence 776544210 0 0123567888888899999999999999999999999988999999999999
Q ss_pred HHhcCCCCH--HHHHHHHHHHHHHhc------chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh--------
Q 009182 326 LKALSDPSD--EVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-------- 389 (541)
Q Consensus 326 l~~L~D~~~--~V~~~~~~~L~~i~~------~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~-------- 389 (541)
++.|.|+.+ +++..++..++.+.+ ..+|++.+++.++..+.+........+-..+..++..+++
T Consensus 481 ~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 560 (1230)
T 1u6g_C 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFD 560 (1230)
T ss_dssp HHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 999999975 888888888888762 2348888999999888765443322333356666654443
Q ss_pred -----hhHHHHHHHHhcc-cCChHHHHHHHHHhHHh
Q 009182 390 -----ERVYRELSTILEG-EADLDFACTMVQALNLI 419 (541)
Q Consensus 390 -----e~i~~~l~~il~~-~~d~~f~~~~v~~L~~i 419 (541)
+.+++.+...+.. +.|...-+..+..+..+
T Consensus 561 ~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 561 ATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp CHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 5677777777743 33433333333444433
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.89 E-value=1.8e-20 Score=214.67 Aligned_cols=349 Identities=11% Similarity=0.043 Sum_probs=274.5
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCC--CHHHHHHH-HHHHHHHhHhhcc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~--d~~VR~~A-~~L~~l~kdi~~e 106 (541)
...|.+.++.++.++++.+ ..++.++..+++...+ ..+|++++|.+.+.++|+ ++++|.+| ..+..+++++..+
T Consensus 88 ~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (876)
T 1qgr_A 88 RREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (876)
T ss_dssp HHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh
Confidence 3445566899999999999 9999999999876422 256899999999999999 99999999 8888888754221
Q ss_pred cchhcHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCCchhhh--chHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~--~~~vR~~a~~~l~~L~~~~~~~l~~--~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~l 182 (541)
.-...++.++|.+.+.+.++ ++.+|..++.+++.+....+..+.. ..+.+++.++..+.|.+.+||..+.+++..+
T Consensus 165 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l 244 (876)
T 1qgr_A 165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (876)
T ss_dssp HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 11234678899999999887 7999999999999877543322211 1134677778888999999999999999999
Q ss_pred HHHhcCCCCCChH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc---------------------CcCcccchhhHHH
Q 009182 183 LQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG---------------------GDQLVPYYADILG 240 (541)
Q Consensus 183 l~~i~~~~~~~~~-~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~---------------------~~~l~p~l~~llp 240 (541)
+...+....+++. .+++.++....+.++.+|..++..+..+++.. .....+++++++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 9766543334566 89999999999999999999987666565431 0112245688999
Q ss_pred HHhhhcCC-------CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh-H
Q 009182 241 AILPCISD-------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-T 312 (541)
Q Consensus 241 ~ll~~l~d-------~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~-~ 312 (541)
.+++.+.+ .+.++|.+|..+.+.+.+..++ .-++.+++.+.+.+.+++|..|.+|+.+++.++++++ +
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 400 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH
Confidence 99998863 3467999999999888776653 1267889999999999999999999999999999886 6
Q ss_pred HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-------chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhc
Q 009182 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (541)
Q Consensus 313 ~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-------~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~ 385 (541)
.+.++++.++|.+++.|+|+++.||..++++++++++ ..++++.+++.+++.+.++ ..++.++...+..+|.
T Consensus 401 ~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999993 3579999999999999876 4445566666666665
Q ss_pred c
Q 009182 386 L 386 (541)
Q Consensus 386 ~ 386 (541)
.
T Consensus 480 ~ 480 (876)
T 1qgr_A 480 A 480 (876)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.89 E-value=5.2e-20 Score=210.72 Aligned_cols=370 Identities=14% Similarity=0.106 Sum_probs=282.2
Q ss_pred hhhhc-chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc---------------------hhhhhHHHHHHHHHHHhhc-
Q 009182 27 ETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---------------------GDFIIFFNQIFDALCKLSA- 83 (541)
Q Consensus 27 ~~~l~-~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~---------------------~~~~~~~~~i~~~L~kl~~- 83 (541)
.+|+. .+++.++.+++|.+..||..|++.+.++++... +...++...++|.+.+.+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 332 (876)
T 1qgr_A 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332 (876)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence 46777 899999999999999999999999988876531 0112355788888888774
Q ss_pred ------CCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-chhhhchHH
Q 009182 84 ------DSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPD 155 (541)
Q Consensus 84 ------D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~-~~l~~~lp~ 155 (541)
|.+.++|.+| .+++.+.+... ...++.++|.+.+.+.++++.+|..++.+++.+....+ ..+.++++.
T Consensus 333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~ 408 (876)
T 1qgr_A 333 QDENDDDDDWNPCKAAGVCLMLLATCCE----DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408 (876)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCc----HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456899999 78887776443 23478889999999999999999999999999998766 557789999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-----
Q 009182 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG----- 228 (541)
Q Consensus 156 ~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~--~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~----- 228 (541)
+++.+++.+.|+++.||..|+.+++.+.+.++.. ..++++.+++.++..++++ +.+|..++..+..++...+
T Consensus 409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999887643 2357899999999999885 8999999999998887643
Q ss_pred ---------cCcccchhhHHHHHhhhcCCC---ChhHHHHHHHHHHHHHHhhcC--------------------------
Q 009182 229 ---------DQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKAD-------------------------- 270 (541)
Q Consensus 229 ---------~~l~p~l~~llp~ll~~l~d~---~~~iR~~A~~~~~~L~~~i~~-------------------------- 270 (541)
..+.||++.++|.+++.+.+. +.++|..+.++.+.+.+.++.
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 567 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESH 567 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458899999999999999874 356776666555544332210
Q ss_pred ---------------------------CC-C--CCChHhHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhChHHHhhhh
Q 009182 271 ---------------------------PA-D--GFDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVLHFL 318 (541)
Q Consensus 271 ---------------------------~~-~--~~~l~~il~~L~~~L~~~~--~~~R~aal~wL~~L~~~~~~~i~~~l 318 (541)
.+ . ....+.+++.+.+.+.+.+ ..+|..++.+++.+....+..+.+|+
T Consensus 568 ~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 647 (876)
T 1qgr_A 568 IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM 647 (876)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence 01 0 0123567778888886654 46899999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhc-----chhhHHHHHHHHHHhcccc--chhhhhhHHHHHHHhhccCChh
Q 009182 319 NDIFDTLLKALSDP-SDEVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDAE 390 (541)
Q Consensus 319 ~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~~-----~~~~f~~~m~~LL~~~~~~--~~ll~~r~~~iir~Lc~~l~~e 390 (541)
+.++|.+.+.|.|+ ++.||..++++++.++. -.+|.+.+++.+++.+.+. ..-+...+...+.+++..+|++
T Consensus 648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~ 727 (876)
T 1qgr_A 648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE 727 (876)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh
Confidence 99999999999998 89999999999999883 2457788999999988752 2223333334455555555543
Q ss_pred ------hHHHHHHHHhc
Q 009182 391 ------RVYRELSTILE 401 (541)
Q Consensus 391 ------~i~~~l~~il~ 401 (541)
.+++.+...+.
T Consensus 728 ~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 728 FKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp GGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45555555544
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.88 E-value=2.8e-20 Score=221.55 Aligned_cols=395 Identities=14% Similarity=0.129 Sum_probs=309.4
Q ss_pred hhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhc-CC-------------------
Q 009182 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DS------------------- 85 (541)
Q Consensus 26 ~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~-D~------------------- 85 (541)
..+|+..++|.++..++|+++.||.+|.+++..+++.++.++.+|++.++|.+.+.+. |+
T Consensus 249 ~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~ 328 (1230)
T 1u6g_C 249 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGG 328 (1230)
T ss_dssp GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccccc
Confidence 4589999999999999999999999999999999998888888999999999987663 11
Q ss_pred -----------------CHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-
Q 009182 86 -----------------DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD- 146 (541)
Q Consensus 86 -----------------d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~- 146 (541)
...||.+| ..++.+... ..+.-...++.++|.+..+++|.++.||..+++++..+....+
T Consensus 329 ~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 407 (1230)
T 1u6g_C 329 DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST-RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRP 407 (1230)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHTT-CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred ccchhhcccccccccccCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcc
Confidence 12478888 777776651 1111123467789999999999999999999999887754321
Q ss_pred ------------------chhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCC
Q 009182 147 ------------------IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208 (541)
Q Consensus 147 ------------------~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~ 208 (541)
..+..++|.+++.+.+.+.|++..+|..++.+++.++...+....++++.++|.++..++++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~ 487 (1230)
T 1u6g_C 408 VQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 487 (1230)
T ss_dssp C------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS
T ss_pred ccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCC
Confidence 23467899999999999999999999999999999998765433456899999999999988
Q ss_pred CH--HHHHHHHHHHHHHHhh-cCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC----CCCC--ChHh
Q 009182 209 DE--FTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP----ADGF--DVGP 279 (541)
Q Consensus 209 ~~--~vr~~al~wL~~l~~~-~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~----~~~~--~l~~ 279 (541)
++ .+|..++.++..+.+. ++..+.||++.++|.++.++.|.++.+|..|..+.+.+.+.++.. +..+ .++.
T Consensus 488 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 567 (1230)
T 1u6g_C 488 SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD 567 (1230)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH
Confidence 64 8999999999988764 445589999999999999999999999988888888888776641 1111 2478
Q ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc------ch
Q 009182 280 ILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DL 351 (541)
Q Consensus 280 il~~L~~~L--~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~------~~ 351 (541)
++|.+...+ .+.+..+|.+|+.+++.+....++.+.++++.++|.+.+.+.++. +|..++++++.++. .+
T Consensus 568 ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~--~r~~~~~al~~i~~~~~~~~~~ 645 (1230)
T 1u6g_C 568 LFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKIDLR 645 (1230)
T ss_dssp HHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCCH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch--hHHHHHHHHHHHHhCccccchH
Confidence 899999988 667889999999999999999999999999999999999998764 67788999999883 25
Q ss_pred hhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCC----hhhHHHHHHHHhcc--cCChHHHHHHHHHhHHhhcCc
Q 009182 352 QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD----AERVYRELSTILEG--EADLDFACTMVQALNLILLTS 423 (541)
Q Consensus 352 ~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~----~e~i~~~l~~il~~--~~d~~f~~~~v~~L~~il~t~ 423 (541)
.++..+++.+.+.+.++..-+...+...+..++...+ .+.+-+.+..++.. ++|........+.|..+.-+.
T Consensus 646 ~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 646 PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 7888899999988877665554455555666665554 35555555444333 567666666666666665433
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.80 E-value=3.9e-17 Score=172.71 Aligned_cols=340 Identities=12% Similarity=0.098 Sum_probs=260.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc-----------hhh-hhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 43 DQDSRVRYYACEALYNIAKVVR-----------GDF-IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 43 D~d~~VR~~A~eaL~~i~k~~~-----------~~~-~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
+.+..||..|+..+.+..+... ..+ ....+.+-+.+...+.++++.| ..+ ..+..+.+....+
T Consensus 48 ~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~--- 123 (462)
T 1ibr_B 48 GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV--- 123 (462)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG---
T ss_pred CCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc---
Confidence 3589999999999999863210 000 1122345666777788877777 544 7777776533221
Q ss_pred hcHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCC-CchhhhchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHH
Q 009182 110 FSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDS--SHEIRQQADSALWEFLQ 184 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~--~~~vR~~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~~lL~D~--~~eVR~~a~~~L~~ll~ 184 (541)
..-+.++|.+.+.+.+. ++.+|..++.+++.+.... +..+..+++.+++.+.+.+.|+ +++||..|.+++..++.
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 12467899999999998 9999999999999988643 5556788999999999999998 79999999999988654
Q ss_pred HhcCCCCCC-h-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchh-hHHHHHhhhcCCCChhHHHHHHHHH
Q 009182 185 EIKNSPSVD-Y-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA-DILGAILPCISDKEEKIRVVARETN 261 (541)
Q Consensus 185 ~i~~~~~~~-~-~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~-~llp~ll~~l~d~~~~iR~~A~~~~ 261 (541)
.++...... . +.+++.+.....++++.+|..++..+..++...+..+.+|++ .+++.++..+.|.++++|..|.+..
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 332111111 1 336888888888899999999999999999988888889999 9999999999999999999988877
Q ss_pred HHHHHhh------cCC---------CCCCC-----hHhHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHhhChHHH
Q 009182 262 EELRAIK------ADP---------ADGFD-----VGPILSIATRQLSS-------EWEATRIEALHWISTLLNRHRTEV 314 (541)
Q Consensus 262 ~~L~~~i------~~~---------~~~~~-----l~~il~~L~~~L~~-------~~~~~R~aal~wL~~L~~~~~~~i 314 (541)
..+.+.. .++ ..... ++.++|.+.+.+.+ ++|..|.+|...+..++...++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~- 362 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD- 362 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH-
Confidence 7765432 010 01122 26788888887743 35778999999999999999854
Q ss_pred hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc------hhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCC
Q 009182 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD------LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (541)
Q Consensus 315 ~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~------~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~ 388 (541)
.++.++|.+.+.++|++..+|..++.+++.++++ .++...+++.++..+.+....++..+...+.++|...+
T Consensus 363 --~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 363 --IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp --HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 4578999999999999999999999999999943 24667899999999988877788888888888887765
Q ss_pred h
Q 009182 389 A 389 (541)
Q Consensus 389 ~ 389 (541)
.
T Consensus 441 ~ 441 (462)
T 1ibr_B 441 E 441 (462)
T ss_dssp G
T ss_pred c
Confidence 4
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.77 E-value=2.1e-17 Score=174.51 Aligned_cols=349 Identities=11% Similarity=0.058 Sum_probs=247.1
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh-chhhhhHHH--HHHHHHHHhhcCC-CHHHHHHH-HHHHHHHhHhhccc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVV-RGDFIIFFN--QIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~-~~~~~~~~~--~i~~~L~kl~~D~-d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
.++.++..++++++.+|..|+.++.++.... .+....... .++|.|.+++.++ ++.||..| ..|..++..-....
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3788999999999999999999999876422 122222222 5788899988888 89999988 77777654111000
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch-HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l-p~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~ 185 (541)
....-...+|.|.+.++++++.+|..++..++.+....+..-...+ ...++.+.+++.+ ++.+||..+..++..+...
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 0111145799999999999999999999999999875432111111 2467777789985 7899999999999988743
Q ss_pred hcCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 009182 186 IKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEE 263 (541)
Q Consensus 186 i~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p-~l~~llp~ll~~l~d~~~~iR~~A~~~~~~ 263 (541)
-.... ......++|.++..++++++.+|..++..+..++...++.... .-..++|.++..+.++++++|..|..+.+.
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 21111 1124789999999999999999999998888776532211110 123578888999999999999988888776
Q ss_pred HHHhhcCCCCCCC--h-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHH
Q 009182 264 LRAIKADPADGFD--V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLL 339 (541)
Q Consensus 264 L~~~i~~~~~~~~--l-~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l-~~l~p~Ll~~L~D~~~~V~~~ 339 (541)
+.. ..+.... . ..+++.+.+.+.++++.+|.+|+..++.+..+++....... .+++|.+++.|.|+++.||..
T Consensus 261 l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~ 337 (450)
T 2jdq_A 261 IVT---GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337 (450)
T ss_dssp HTT---SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred Hhh---CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 632 1100000 0 25889999999999999999999999999988877665544 479999999999999999999
Q ss_pred HHHHHHHHhcc--hhhHH-----HHHHHHHHhccccchhhhhhHHHHHHHhh
Q 009182 340 VLEVHACIAKD--LQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLC 384 (541)
Q Consensus 340 ~~~~L~~i~~~--~~~f~-----~~m~~LL~~~~~~~~ll~~r~~~iir~Lc 384 (541)
++++++.++.+ +.... .+++.|++++.+....+...+...+.+++
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999842 22222 36677777776554434444444444443
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.76 E-value=1.1e-16 Score=169.08 Aligned_cols=315 Identities=16% Similarity=0.063 Sum_probs=230.7
Q ss_pred chhHHHHhhcCCC-CHHHHHHHHHHHHHHHHHhchhhhh-HHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 32 QIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 32 ~ii~~vl~~l~D~-d~~VR~~A~eaL~~i~k~~~~~~~~-~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
.++|.++..++++ ++.+|..|+.++.+++......... .-..++|.|.+++.+++++||..| .+|..+..+......
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 5889999999998 8999999999999988532111111 113578999999999999999999 888777652211000
Q ss_pred hhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC-CchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 009182 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i 186 (541)
...-...+|.+...+.+ .++.+|..++..++.+.... +..-.......++.|.+++.+.++++|..++.++..+...-
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 01113469999999985 79999999999999998653 22222344788889999999999999999999988886311
Q ss_pred cCCCC-CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch-hhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 187 KNSPS-VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 187 ~~~~~-~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l-~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
..... ..-..++|.++..++++++.+|..|+..++.++...+......+ ..++|.+.+.+.++++.+|..|..+.+.+
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 00000 00135788999999999999999999999887653322111111 36889999999999999999888887766
Q ss_pred HHhhcCCCCCC-C-h-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-ChHHHhhhh-HHHHHHHHHhcCCCCHHHHHH
Q 009182 265 RAIKADPADGF-D-V-GPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFL-NDIFDTLLKALSDPSDEVVLL 339 (541)
Q Consensus 265 ~~~i~~~~~~~-~-l-~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~-~~~~i~~~l-~~l~p~Ll~~L~D~~~~V~~~ 339 (541)
.. ...... . . ..++|.+.+.+.+++..+|..|...++.+... .++...... .+++|.|++.+.++++.|+..
T Consensus 304 ~~---~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 380 (450)
T 2jdq_A 304 TA---GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQV 380 (450)
T ss_dssp TT---SCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHH
T ss_pred Hc---CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 32 110000 0 1 25788888888888899999999999999987 455443333 368999999999999999999
Q ss_pred HHHHHHHHhc
Q 009182 340 VLEVHACIAK 349 (541)
Q Consensus 340 ~~~~L~~i~~ 349 (541)
+++++..+..
T Consensus 381 a~~aL~~l~~ 390 (450)
T 2jdq_A 381 ALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=1.3e-15 Score=168.06 Aligned_cols=346 Identities=15% Similarity=0.142 Sum_probs=242.4
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
...+.++|++.+++.|+++.||+.|+.+++++.+.. ++..+. +..++.+.++++|+++.|+.+| .+|..++++-...
T Consensus 117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 445567788999999999999999999999998743 333322 3678999999999999999999 8877765522110
Q ss_pred cchh-cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 107 SDQF-SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 107 ~~~~-~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
... .....++.+...+.+.+|..+..++.+++.+....+. ....+++.+..++.+.++.|+.+|++++..+...
T Consensus 195 -~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 195 -NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp -CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred -cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 001 1234466777777889999999999988877644332 2456677777899999999999999987776432
Q ss_pred hcCCCCCC-h----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHH
Q 009182 186 IKNSPSVD-Y----GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (541)
Q Consensus 186 i~~~~~~~-~----~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~ 260 (541)
+.. +++ + +.+.+.++... ++++.+|..++.+++.+....+..+.+++..+ + +..+++..||..|.+.
T Consensus 270 ~~~--~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~ 341 (591)
T 2vgl_B 270 LPK--DSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDI 341 (591)
T ss_dssp CCB--TTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHH
T ss_pred cCC--CHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHH
Confidence 211 122 2 35556666544 58999999999999999988887776665543 2 3334348888777655
Q ss_pred HHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHH
Q 009182 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV 340 (541)
Q Consensus 261 ~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~ 340 (541)
.. ++... -+.+.+++.|.+.+.+.+...|..++.+++.++.+.+.. .+.+++.+++.++|+.+.|+..+
T Consensus 342 L~---~l~~~----~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~~~~~~v~~e~ 410 (591)
T 2vgl_B 342 MI---RLASQ----ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQTKVNYVVQEA 410 (591)
T ss_dssp HH---HTCCS----STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HH---HHCCh----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHcccchHHHHHH
Confidence 44 33432 357889999999999999999999999999999998744 46788899999999999999988
Q ss_pred HHHHHHHhc-chhhHHHHHHHHHHhccccc-hhhhhhHHHHHHHhhccC-ChhhHHHHHHHH
Q 009182 341 LEVHACIAK-DLQHFRQLVVFLVHNFRVDN-SLLEKRGALIIRRLCVLL-DAERVYRELSTI 399 (541)
Q Consensus 341 ~~~L~~i~~-~~~~f~~~m~~LL~~~~~~~-~ll~~r~~~iir~Lc~~l-~~e~i~~~l~~i 399 (541)
+.++..|.. .+...+..+..|.+.+.+.. ......+..++-+.|..+ +++.+.+.+.+-
T Consensus 411 i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~ 472 (591)
T 2vgl_B 411 IVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEG 472 (591)
T ss_dssp HHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTT
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHHh
Confidence 888888873 33333456666777665432 222223333444444444 234444444433
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.74 E-value=2.1e-16 Score=171.65 Aligned_cols=315 Identities=16% Similarity=0.102 Sum_probs=230.2
Q ss_pred cchhHHHHhhcCCC-CHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 31 QQIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 31 ~~ii~~vl~~l~D~-d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
..++|.++.+++++ ++.+|..|+.++.+++..... ....+ ..++|.|.+++.++++.||..| .+|.+++.+-...
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 35789999999998 999999999999998853211 11111 3568888999999999999999 8888876421100
Q ss_pred cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-CchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
.....-...+|.|.+.+.+.++.+|..++..+..+.... +..-......+++.|.+++.+++++||..++.+|..+...
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 001112356999999999999999999999999998654 2222344567888899999999999999999999988732
Q ss_pred hcCCCCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc-hhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 009182 186 IKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEE 263 (541)
Q Consensus 186 i~~~~~~~~-~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~-l~~llp~ll~~l~d~~~~iR~~A~~~~~~ 263 (541)
-......-. ..++|.++..+.++++.+|..|+..++.++...+...... -..++|.++..+.++++.+|..|..+.+.
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 100000001 2678999999999999999999998888765322211111 24788999999999999999988888776
Q ss_pred HHHhhcCCCCCC-C-h-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChH--HHhhhh--HHHHHHHHHhcCCCCHHH
Q 009182 264 LRAIKADPADGF-D-V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRT--EVLHFL--NDIFDTLLKALSDPSDEV 336 (541)
Q Consensus 264 L~~~i~~~~~~~-~-l-~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~--~i~~~l--~~l~p~Ll~~L~D~~~~V 336 (541)
+.. ...... . + ..+++.|.+.+.+++..+|..|+..++.+...... +...++ .+.+|.++..|.++++.|
T Consensus 368 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 368 ITA---GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp HTT---SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred HHc---CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 632 110000 0 0 24677888888778899999999999999987543 322222 348999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 009182 337 VLLVLEVHACIAK 349 (541)
Q Consensus 337 ~~~~~~~L~~i~~ 349 (541)
+..++++|..+..
T Consensus 445 ~~~al~aL~~l~~ 457 (530)
T 1wa5_B 445 IEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999884
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.73 E-value=1.2e-16 Score=173.44 Aligned_cols=352 Identities=12% Similarity=0.069 Sum_probs=251.4
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-hhhhhHH-HHHHHHHHHhhcCC-CHHHHHHH-HHHHHHHhHhh
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFF-NQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIV 104 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~-~~~~~~~-~~i~~~L~kl~~D~-d~~VR~~A-~~L~~l~kdi~ 104 (541)
.....++.++..++++++.+|..|+.++.++..... ..+.... ..++|.|.+++.++ ++.||..| .+|.+++..-.
T Consensus 84 ~~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 356678999999999999999999999988754321 1111111 25789999999987 89999888 77777654211
Q ss_pred cccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchh-hhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM-LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 105 ~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l-~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
.......-...+|.|.+.+.++++.+|..++..++.++...+..- ...-...++.|.+++.+++.+||..++.+|..+.
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 000011113569999999999999999999999999986532210 1111356778888999999999999999999887
Q ss_pred HHhcCCCCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch-hhHHHHHhhhcCCCChhHHHHHHH
Q 009182 184 QEIKNSPSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARE 259 (541)
Q Consensus 184 ~~i~~~~~~~---~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l-~~llp~ll~~l~d~~~~iR~~A~~ 259 (541)
..-. +... ...++|.++..+.++++.++..++..++.++...+....... ..++|.++..+.++++++|..|..
T Consensus 244 ~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~ 321 (530)
T 1wa5_B 244 RGKK--PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 321 (530)
T ss_dssp CCSS--SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCCC--CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHH
Confidence 4221 1122 467899999999999999999999999888754332222222 377899999999999999998888
Q ss_pred HHHHHHHhhcCCCCCC-C-h-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHH
Q 009182 260 TNEELRAIKADPADGF-D-V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDE 335 (541)
Q Consensus 260 ~~~~L~~~i~~~~~~~-~-l-~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l-~~l~p~Ll~~L~D~~~~ 335 (541)
+.+.+. ..++... . + ..+++.+...+.++++.+|..|+..++.+..+.+..+.... .+++|.|++.|+++++.
T Consensus 322 ~L~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 398 (530)
T 1wa5_B 322 AVGNIV---TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 398 (530)
T ss_dssp HHHHHT---TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred HHHHHH---cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 877663 1110000 0 1 25889999999999999999999999999998877665444 46899999999999999
Q ss_pred HHHHHHHHHHHHhcc--h--hh---HHH--HHHHHHHhccccchhhhhhHHHHHHHhhc
Q 009182 336 VVLLVLEVHACIAKD--L--QH---FRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (541)
Q Consensus 336 V~~~~~~~L~~i~~~--~--~~---f~~--~m~~LL~~~~~~~~ll~~r~~~iir~Lc~ 385 (541)
|+..++++|+.++.+ . .+ +.. +++.|+.++.+...-+...+...+.+++.
T Consensus 399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 399 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 999999999999842 2 22 222 67778887766554444445555555543
No 18
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=4.1e-16 Score=152.04 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=154.8
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhc-CCCHHHHHHH-HHHHHHHhHhh
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIV 104 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~-D~d~~VR~~A-~~L~~l~kdi~ 104 (541)
...+..+-+.+...++|++|++|+.|++++..+++.+.+.....+.++++.|.+++. |++..||.+| .++..+++
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~--- 86 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK--- 86 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH---
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH---
Confidence 344555667789999999999999999999988876422111223566666666664 6666666666 55444443
Q ss_pred cccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 105 ~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
..+..+.+|.+.+++.++..++|+++.||..+..++..+..
T Consensus 87 ---------------------------------------~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 87 ---------------------------------------GLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp ---------------------------------------HHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------HHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 23345678889999999999999999999999999988875
Q ss_pred HhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-c-CcccchhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 009182 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-D-QLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (541)
Q Consensus 185 ~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~-~-~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~ 262 (541)
. ..++.++|.+...++++++.+|..++.|++.+....+ . ...+|++.++|.+.+++.|+++++|..|.++.+
T Consensus 128 ~------~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 128 S------TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp T------SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred c------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3 3478999999999999999999999999999766553 3 467899999999999999999999999999999
Q ss_pred HHHHhhcC
Q 009182 263 ELRAIKAD 270 (541)
Q Consensus 263 ~L~~~i~~ 270 (541)
.+.+.+++
T Consensus 202 ~l~~~vg~ 209 (242)
T 2qk2_A 202 TLIKLMGD 209 (242)
T ss_dssp HHHHHHCH
T ss_pred HHHHHcCH
Confidence 99877763
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.71 E-value=1.2e-15 Score=165.26 Aligned_cols=315 Identities=17% Similarity=0.109 Sum_probs=230.2
Q ss_pred chhHHHHhhcCCCC-HHHHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 32 QIVPPVLNSFSDQD-SRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 32 ~ii~~vl~~l~D~d-~~VR~~A~eaL~~i~k~~~~~~~~~~-~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
.++|.++..+.+++ +.+|..|+.+|.+++........... ...+|.|.+++.+++++||..| .+|.+++.+-.....
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 57899999999987 99999999999999863211111111 1478999999999999999999 888887642111000
Q ss_pred hhcHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 109 QFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l-~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
...-...+|.|...+ .+.++.+|..++..+..+....+..-.......++.|.+++.+++++||..++.+|..+...-.
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 111123589999999 6789999999999999998764333334567788889999999999999999999988762110
Q ss_pred CCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc-hhhHHHHHhhhcCCC-ChhHHHHHHHHHHHH
Q 009182 188 NSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDK-EEKIRVVARETNEEL 264 (541)
Q Consensus 188 ~~~~~-~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~-l~~llp~ll~~l~d~-~~~iR~~A~~~~~~L 264 (541)
..... --..++|.++..+.++++.++..|+..|+.++...+...... -..++|.+...+.++ ++.+|..|..+.+.+
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 00000 012468899999999999999999999988875322211111 246788999999888 899998888877766
Q ss_pred HHhhcCCCCCC---ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHH
Q 009182 265 RAIKADPADGF---DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLL 339 (541)
Q Consensus 265 ~~~i~~~~~~~---~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V~~~ 339 (541)
.. .+.... --..++|.|.+.+.+.+..+|..|+..|+.+......+...++ .+.++.++..|.++++.++..
T Consensus 357 ~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~ 433 (528)
T 4b8j_A 357 TA---GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTV 433 (528)
T ss_dssp HT---SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HC---CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 42 110000 0125678888888778899999999999999988433333333 468999999999999999999
Q ss_pred HHHHHHHHhc
Q 009182 340 VLEVHACIAK 349 (541)
Q Consensus 340 ~~~~L~~i~~ 349 (541)
++++|..+..
T Consensus 434 al~~L~~l~~ 443 (528)
T 4b8j_A 434 CLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=3.3e-14 Score=156.71 Aligned_cols=353 Identities=16% Similarity=0.174 Sum_probs=232.0
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
+.......+.+++++++++..+|+.+..++.++++... +. ..-+.+.+.+-++|+++.+|..| .+|.++.
T Consensus 44 G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-e~---~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----- 114 (591)
T 2vgl_B 44 GKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP-DM---AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----- 114 (591)
T ss_dssp TCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH-HH---HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-----
T ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc-hH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-----
Confidence 34456677888899999999999999988888776422 21 12345677788999999999888 5544432
Q ss_pred ccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
.....+.++|.+.+++.|++|.||+.|+.++..+....+..+ .. +.+++.+.+++.|+++.||..|..++..+...
T Consensus 115 --~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~-~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 115 --VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV-ED-QGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp --SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH-HH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred --hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc-cc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 122456778999999999999999999999999987654322 11 36788888999999999999998998877532
Q ss_pred hcCCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 186 IKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 186 i~~~~~~~-~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
-......+ ....++.+++...+.++..+...+.+++.+. +.+ -+...++++.+.+++.++++.|+-.|.++...+
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKD-DREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCS-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCC-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 11100112 3566777787777788888887777776443 221 124578999999999999999998887776655
Q ss_pred HHhhcCCCCCCC--hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 009182 265 RAIKADPADGFD--VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (541)
Q Consensus 265 ~~~i~~~~~~~~--l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~ 342 (541)
.+.+..+.+... .+.+.+.|.. +.+.+..+|..|+.+++.+....|+.+.++...+ ....+|+ ..||..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~~~~~d~-~~Ir~~al~ 340 (591)
T 2vgl_B 267 LELLPKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF----FVKYNDP-IYVKLEKLD 340 (591)
T ss_dssp CCSCCBTTBSHHHHHHHTHHHHHH-HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----SCCTTSC-HHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----eeccCCh-HHHHHHHHH
Confidence 322211111111 1234445554 3456788999999999999998887766654432 1112333 666666666
Q ss_pred HHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhccc
Q 009182 343 VHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGE 403 (541)
Q Consensus 343 ~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~~~ 403 (541)
++..++. ++..+.++..|++.+.+...-....+...|.++|....+ +.+...+.+.+...
T Consensus 341 ~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~ 402 (591)
T 2vgl_B 341 IMIRLAS-QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK 402 (591)
T ss_dssp HHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHccc
Confidence 6666653 233455666666655543333333334455555555432 44555555555443
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.70 E-value=6.6e-16 Score=167.42 Aligned_cols=312 Identities=12% Similarity=0.087 Sum_probs=228.6
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-hhhh-hHHHHHHHHHHHhhcCCC-HHHHHHH-HHHHHHHhHhhcc
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFI-IFFNQIFDALCKLSADSD-ANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~-~~~~-~~~~~i~~~L~kl~~D~d-~~VR~~A-~~L~~l~kdi~~e 106 (541)
..-+|.++..+.++++.+|..|+.++.++..... +... ..-..++|.|.+++.+++ +.+|..| .+|.+++.+-...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3457889999999999999999999998865332 1111 111257889999998887 9999988 8887776521110
Q ss_pred cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNML-SDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL-~D~~~eVR~~a~~~L~~ll 183 (541)
.....-...+|.|...+.++++.+|..++..++.++...+.. ...+ ...++.|++++ .+++.++|..++.+|..+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 001111246999999999999999999999999998653321 1111 13577788899 6789999999999999887
Q ss_pred HHhcCCCCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chhhHHHHHhhhcCCCChhHHHHHHH
Q 009182 184 QEIKNSPSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARE 259 (541)
Q Consensus 184 ~~i~~~~~~~---~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p-~l~~llp~ll~~l~d~~~~iR~~A~~ 259 (541)
..- +... ....+|.++..+.++++.++..|+..+..++...+..... .-..++|.++..+.++++++|..|..
T Consensus 232 ~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 232 RGK---PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp CSS---SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred cCC---CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence 432 2222 4679999999999999999999999888876433221111 12368899999999999999988888
Q ss_pred HHHHHHHhhcCCCCC---CChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCH
Q 009182 260 TNEELRAIKADPADG---FDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSD 334 (541)
Q Consensus 260 ~~~~L~~~i~~~~~~---~~l~~il~~L~~~L~~~-~~~~R~aal~wL~~L~~~~~~~i~~~l-~~l~p~Ll~~L~D~~~ 334 (541)
+.+.+.. .+... .--..+++.|...+.++ +..+|..|...++.+..+.+....... .+++|.|++.|.++++
T Consensus 309 ~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 385 (528)
T 4b8j_A 309 TVGNIVT---GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEF 385 (528)
T ss_dssp HHHHHTT---SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred HHHHHHc---CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 8776632 11000 00035788888888887 899999999999999987766554333 3789999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 009182 335 EVVLLVLEVHACIAK 349 (541)
Q Consensus 335 ~V~~~~~~~L~~i~~ 349 (541)
.++..++++|+.++.
T Consensus 386 ~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 386 DIKKEAAWAISNATS 400 (528)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999984
No 22
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.69 E-value=1.6e-15 Score=150.65 Aligned_cols=254 Identities=14% Similarity=0.081 Sum_probs=197.1
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchh
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~ 110 (541)
.-++.++..++|+++.||..|+.+|.++.. ++.++.|.+++.|+++.||..| .+|.++.. ...
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~------~~~ 86 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI------CKK 86 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC------CTT
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------ccc
Confidence 457889999999999999999999987641 4678889999999999999999 77655321 112
Q ss_pred cHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 111 SIEEFIPLLR-ERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 111 ~l~~~iP~L~-e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
....++|.+. ...+|+++.||..++..++.+....+ .+-+..++.|.+.+.|+++.||..+..+|+.+..
T Consensus 87 ~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 87 CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 3455677776 35688999999999999998864332 2356778888889999999999999988876531
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc
Q 009182 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~ 269 (541)
+..+|.++..++++++.||..|+..++.+. . .-+..+|.+...+.|+++++|..|..+.+.+.
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~-----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~---- 220 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININK---Y-----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK---- 220 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT---C-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc---c-----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----
Confidence 236788888899999999999999887652 1 23678899999999999999999888877652
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 009182 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHAC 346 (541)
Q Consensus 270 ~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~ 346 (541)
-+..++.|.+.+.+++ +|..+...++.+.. +..+|.|.+.+.|. +++++..+.+.+.+
T Consensus 221 -------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 221 -------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 1467788888887755 78889888887754 35678888888764 67888888777654
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=3.3e-15 Score=145.61 Aligned_cols=206 Identities=17% Similarity=0.218 Sum_probs=172.5
Q ss_pred CCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Q 009182 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINE 222 (541)
Q Consensus 144 ~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~-~~~~~vr~~al~wL~~ 222 (541)
.++.++...+| +.++..+.|.+-.+|.++...+..+++..+.....++.++++.+...+. |++..+|..|+..++.
T Consensus 7 ~~~~di~~~l~---~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~ 83 (242)
T 2qk2_A 7 LDPVDILSKMP---KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLAL 83 (242)
T ss_dssp TSCBCCGGGSC---TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCcccccccCC---HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 34555555554 3566688999999999999999999987443223467899999999995 9999999999999999
Q ss_pred HHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHH
Q 009182 223 FVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHW 302 (541)
Q Consensus 223 l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~w 302 (541)
++...+..+.+|.+.++|.++..++|+.+.+|+.|..+...+... ..++.+++.+...+.+.++.+|..++.|
T Consensus 84 la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~ll~~l~~~l~~~~~~vr~~~l~~ 156 (242)
T 2qk2_A 84 LAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKNPSVKSETALF 156 (242)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 999888899999999999999999999999999999988877542 3478999999999999999999999999
Q ss_pred HHHHHhhC-hH-HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chhhHHHHHH
Q 009182 303 ISTLLNRH-RT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVV 359 (541)
Q Consensus 303 L~~L~~~~-~~-~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~~f~~~m~ 359 (541)
++.+.... |+ ...++++.++|.+.+.|+|+.++||..+..+++.+.. ++..|.++++
T Consensus 157 l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99988776 44 3568999999999999999999999999999999883 3333444443
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.8e-14 Score=141.38 Aligned_cols=215 Identities=13% Similarity=0.204 Sum_probs=180.7
Q ss_pred CCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHhcCCC--CCChHHHHHHHHHhc-CCCCHHHHHHHHHH
Q 009182 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE-FLQEIKNSP--SVDYGRMAEILVQRA-ASPDEFTRLTAITW 219 (541)
Q Consensus 144 ~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~-ll~~i~~~~--~~~~~~ii~~Ll~~~-~~~~~~vr~~al~w 219 (541)
..+.+++.-+|. +....+.+++-.-|+++...+.. +++...+.. ..++..++..+.+.+ +|++..+|..|+..
T Consensus 8 ~~~~~i~~kl~~---~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~a 84 (249)
T 2qk1_A 8 LPEETILDKLPK---DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQS 84 (249)
T ss_dssp CCCBCCGGGSCT---THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred cChhhhhhhCCh---hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 345566666665 55567889999999999888888 775433332 346789999999999 79999999999999
Q ss_pred HHHHHhhcC-cCcc-cchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHH
Q 009182 220 INEFVKLGG-DQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRI 297 (541)
Q Consensus 220 L~~l~~~~~-~~l~-p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~ 297 (541)
++.+++..+ ..+. +|...++|.++..++|..+.||+.+..+...+.+.+........++.+++.+...+.+.++.+|+
T Consensus 85 l~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~ 164 (249)
T 2qk1_A 85 VELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRM 164 (249)
T ss_dssp HHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHH
Confidence 999998777 8898 99999999999999999999999999999888876533211112789999999999999999999
Q ss_pred HHHHHHHHHHhhCh---HHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chhhHHHHHHHH
Q 009182 298 EALHWISTLLNRHR---TEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFL 361 (541)
Q Consensus 298 aal~wL~~L~~~~~---~~i~~~l-~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~~f~~~m~~L 361 (541)
+++.|+..+....+ ..+.+++ +.++|.+.+.+.|++++||..+.++++.+.. ++..|.++++.|
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999987 6788999 9999999999999999999999999999883 566788888775
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.62 E-value=4.6e-14 Score=156.33 Aligned_cols=370 Identities=14% Similarity=0.105 Sum_probs=244.7
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
....+.+++++.++++|+++.||++|+.+++++.+...+.+ +..++.+.++++|+++.|+.+| .++..+++.-..
T Consensus 137 ~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 34566678889999999999999999999999887543322 2457777888999999999988 776665431100
Q ss_pred ccchhcHhhhHHHHHHHhcC---------------CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHH---cCCC
Q 009182 106 ESDQFSIEEFIPLLRERMNV---------------LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM---LSDS 167 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d---------------~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~l---L~D~ 167 (541)
.......++|.+.+.+++ .+|..+..++.+++.+....+ +...-+.+++..+.+- ....
T Consensus 213 --~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~-~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 213 --MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD-DSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp --HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHHHTSCCSSTH
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhccccccch
Confidence 011344667777766542 589999999999998876432 1222223333333321 1223
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhc
Q 009182 168 SHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (541)
Q Consensus 168 ~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l 246 (541)
+..|.-+|.+++..+ .. .+. ....++.+...+.++++.+|..|+.+++.++...+..+.+ ..+.++.++
T Consensus 290 ~~aV~~ea~~~i~~l----~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~----~~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDI----KS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQR----HRSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHS----CC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGG----GHHHHHHGG
T ss_pred HHHHHHHHHHHHHhc----CC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHH----HHHHHHHHc
Confidence 557777776765442 21 111 2346778888888899999999999999998876654444 445677888
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHH
Q 009182 247 SDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (541)
Q Consensus 247 ~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll 326 (541)
.|++..||..|.++...+ +.. -+.+.+++.+.+.+.+.+.+.|..++.+++.++.+.++.. ...++.++
T Consensus 360 ~d~d~~Ir~~alelL~~l---~~~----~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~----~~~v~~ll 428 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFAL---VNG----NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK----RWHIDTIM 428 (618)
T ss_dssp GSSCHHHHHHHHHHHHHH---CCS----SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH----HHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHH---ccc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH----HHHHHHHH
Confidence 999999998887776555 332 3468899999999988889999999999999999886554 45567777
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhcccc---chhhhhhHHHHHHHhhccC-------------Ch
Q 009182 327 KALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVD---NSLLEKRGALIIRRLCVLL-------------DA 389 (541)
Q Consensus 327 ~~L~D~~~~V~~~~~~~L~~i~~-~~~~f~~~m~~LL~~~~~~---~~ll~~r~~~iir~Lc~~l-------------~~ 389 (541)
+.+++..+.|+..++..+..+.. +++.....+..+.+.+.++ .... ..+..++-..|..+ ++
T Consensus 429 ~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~ 507 (618)
T 1w63_A 429 RVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTE 507 (618)
T ss_dssp HHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH-HHHHHHHhhhHHHhcccccccccccCCCH
Confidence 77777766666666666777663 3444455777777777642 3333 24455666665433 34
Q ss_pred hhHHHHHHHHhcc-cCChHHHHHHHHHhHHhhcCcHh
Q 009182 390 ERVYRELSTILEG-EADLDFACTMVQALNLILLTSSE 425 (541)
Q Consensus 390 e~i~~~l~~il~~-~~d~~f~~~~v~~L~~il~t~~e 425 (541)
+.+...+..++.. .++...-...+..+.-+....|+
T Consensus 508 ~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~ 544 (618)
T 1w63_A 508 DEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC 544 (618)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc
Confidence 5566666666543 23333333444444444444443
No 26
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.59 E-value=2.6e-13 Score=134.62 Aligned_cols=237 Identities=16% Similarity=0.064 Sum_probs=182.5
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhc
Q 009182 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (541)
Q Consensus 74 i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~ 152 (541)
.++.|.+.+.|+++.||..| ..|.+... +..+|.|.+.+.++++.+|..++..++.+..... .
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-----~ 87 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-----C 87 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-----T
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-----c
Confidence 36777888999999999988 77665421 2358999999999999999999999988764322 2
Q ss_pred hHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc
Q 009182 153 LPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (541)
Q Consensus 153 lp~~L~~L~-~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l 231 (541)
++.+++.+. .+++|+++.||..+..+|+.+..... ...+..++.+...++++++.+|..|+..++.+..
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------ 157 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------ 157 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------
Confidence 455666565 35789999999999999998864321 2346789999999999999999999988875432
Q ss_pred ccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh
Q 009182 232 VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (541)
Q Consensus 232 ~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~ 311 (541)
+..+|.+...+.|+++.+|..|..+.+.+ + .+-+.+++.|.+.+.+++..+|..|+.+|+.+.
T Consensus 158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~-----~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~---- 220 (280)
T 1oyz_A 158 ----KATIPLLINLLKDPNGDVRNWAAFAININ----K-----YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK---- 220 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHH----T-----CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhh----c-----cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----
Confidence 34678888889999999999998888765 1 123678899999999999999999999988775
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhcc
Q 009182 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 312 ~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~ 366 (541)
-+..+|.+++.++|++ ||..+.++|+++... ..++.|.+.+.
T Consensus 221 ------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-----~~~~~L~~~l~ 262 (280)
T 1oyz_A 221 ------DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK-----TLLPVLDTMLY 262 (280)
T ss_dssp ------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG-----GGHHHHHHHHT
T ss_pred ------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch-----hhhHHHHHHHh
Confidence 2456788888998865 889999999999752 34555555554
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.59 E-value=1e-11 Score=138.01 Aligned_cols=351 Identities=13% Similarity=0.050 Sum_probs=240.3
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh-hhHHHHHHHHHHHhhcC-CCHHHHHHH-HHHHHHHhHhhc
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~-~~~~~~i~~~L~kl~~D-~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
+-...+|.+...++++++.||..|+.+|.+++....... ......+++.|.+.+.+ +++++|..| ..|..+.++--.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 444578999999999999999999999999986432111 11113677888887764 488898888 777665432100
Q ss_pred ccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l-p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
.....-...+|.|.+.+.+.++.+|..++..+..+....+.....+. ...++.|.+++.+++..++..++.+|..+..
T Consensus 91 -~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 91 -LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp -HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 00111124699999999999999999999999999876543222222 4667888889999999999998888887763
Q ss_pred HhcCC-CCCChHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhcCcCcccch--hhHHHHHhhhcCCCChhHHHHHHHH
Q 009182 185 EIKNS-PSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARET 260 (541)
Q Consensus 185 ~i~~~-~~~~~~~ii~~Ll~~~~~~~-~~vr~~al~wL~~l~~~~~~~l~p~l--~~llp~ll~~l~d~~~~iR~~A~~~ 260 (541)
.-... ....-...++.++..+++.+ +.++..++..+..++.. + .....+ ...+|.+++.+.+++++++..+..+
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~-~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-T-THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-c-ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 11000 00001245777777777664 55667777777766532 1 112221 2578899999999888998888777
Q ss_pred HHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhcCCCC--HHHH
Q 009182 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPS--DEVV 337 (541)
Q Consensus 261 ~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~-l~~l~p~Ll~~L~D~~--~~V~ 337 (541)
...+.+.. ........+++.|.+.+.+++..+|..|...|..+....+...... -...+|.|++.|.+++ ++|+
T Consensus 248 L~nL~~~~---~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 248 LRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHGGGC---TTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhcc---hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 77664332 1122346899999999999999999999999999988765432211 2357888888887643 7999
Q ss_pred HHHHHHHHHHhcchh---h----H--HHHHHHHHHhccccc-hhhhhhHHHHHHHhhc
Q 009182 338 LLVLEVHACIAKDLQ---H----F--RQLVVFLVHNFRVDN-SLLEKRGALIIRRLCV 385 (541)
Q Consensus 338 ~~~~~~L~~i~~~~~---~----f--~~~m~~LL~~~~~~~-~ll~~r~~~iir~Lc~ 385 (541)
..++++|+.++.+.. + + ...++.|.+.+++++ .-+...+...+++|+.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 999999999984211 1 1 246788888887653 3445556667888875
No 28
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.57 E-value=1e-12 Score=152.84 Aligned_cols=351 Identities=10% Similarity=0.078 Sum_probs=232.1
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc--
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT-- 105 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~-- 105 (541)
....|...++.++.+++..||..+|+++..|++.- ....|++++|.|.+.++++++..+.|| ..+..++++.-.
T Consensus 82 ~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d---~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 82 NVELIKKEIVPLMISLPNNLQVQIGEAISSIADSD---FPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH---STTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh---CccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456677888888888999999999999888653 224689999999999988888899999 888888875421
Q ss_pred ccc------hhcHhhhHHHHHHH-------hcCCCH---HHH------HHHHHHHHHhhcC-CCchhhhchHHHHHHHHH
Q 009182 106 ESD------QFSIEEFIPLLRER-------MNVLNP---YVR------QFLVGWITVLDSV-PDIDMLGFLPDFLDGLFN 162 (541)
Q Consensus 106 e~~------~~~l~~~iP~L~e~-------l~d~~~---~vR------~~a~~~l~~L~~~-~~~~l~~~lp~~L~~L~~ 162 (541)
.++ ...+..+.|.+.+. +.+.++ .+| ..++..+..+... .+..+..+++.+++.+.+
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK 238 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 110 11244555544443 344322 234 3355555554321 233344566777776666
Q ss_pred HcCCC--------C-------HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Q 009182 163 MLSDS--------S-------HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-----SPDEFTRLTAITWINE 222 (541)
Q Consensus 163 lL~D~--------~-------~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~-----~~~~~vr~~al~wL~~ 222 (541)
.+... + ..+|+.+++++..+.+.......++++.+++..++.+. ..++.++..++..+..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 66321 0 24788899998888765432222345666666665442 3467888888876666
Q ss_pred HHhhcC--cCcc--cchhhHH-HHHhhhcCCCC---------h--------------hHHHHHHHHHHHHHHhhcCCCCC
Q 009182 223 FVKLGG--DQLV--PYYADIL-GAILPCISDKE---------E--------------KIRVVARETNEELRAIKADPADG 274 (541)
Q Consensus 223 l~~~~~--~~l~--p~l~~ll-p~ll~~l~d~~---------~--------------~iR~~A~~~~~~L~~~i~~~~~~ 274 (541)
+++... ..+. ||+++++ +.+++.|..+. | +.|.+|.+....+.+..++
T Consensus 319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---- 394 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---- 394 (960)
T ss_dssp HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH----
T ss_pred HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch----
Confidence 654322 2333 8999999 89999886421 1 3566666666666544321
Q ss_pred CChHhHHHHHHHhcC------CCCHHHHHHHHHHHHHHHhhC---hHHHhh-----hhHHH-HHHHHHhcCCC---CHHH
Q 009182 275 FDVGPILSIATRQLS------SEWEATRIEALHWISTLLNRH---RTEVLH-----FLNDI-FDTLLKALSDP---SDEV 336 (541)
Q Consensus 275 ~~l~~il~~L~~~L~------~~~~~~R~aal~wL~~L~~~~---~~~i~~-----~l~~l-~p~Ll~~L~D~---~~~V 336 (541)
.-++.+++.+.+.+. +++|..|.+|+..++.++++. ..++.+ .+..+ ...+++.|+|+ .+-|
T Consensus 395 ~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 395 LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence 113456666666665 678999999999999998753 112211 22232 23456667787 8999
Q ss_pred HHHHHHHHHHHhc--chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhcc
Q 009182 337 VLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (541)
Q Consensus 337 ~~~~~~~L~~i~~--~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~ 386 (541)
|..+||+++++++ .++++.++++.+++.+.++...++..+...+.++|..
T Consensus 475 r~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 9999999999995 4678999999999999887778888999999999874
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.57 E-value=1.1e-11 Score=133.33 Aligned_cols=351 Identities=13% Similarity=0.046 Sum_probs=233.9
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch--hhhhHHHHHHHHHHHhhc-CCCHHHHHHH-HHHHHHHhHh
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDI 103 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~--~~~~~~~~i~~~L~kl~~-D~d~~VR~~A-~~L~~l~kdi 103 (541)
.+-...+|++...++++++.+|..|+.++.+++..-.. .+. .-+..++.|.+++. ++++++|..| ..|.++.++-
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~-~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH-hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 44556789999999999999999999999998853211 111 11357788888775 4588888887 7777765421
Q ss_pred hcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh-chHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009182 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (541)
Q Consensus 104 ~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~-~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~l 182 (541)
-. .....-...+|.|.+.++++++.+|..++..+..+....+..-.. .=...++.|.+++.+++.++|..+..+|..+
T Consensus 92 ~~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 92 EG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 00 001111246999999999999999999999999998764322111 1245678888899999999999998888766
Q ss_pred HHHhcCCC-CCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccch--hhHHHHHhhhcCCCChhHHHHHH
Q 009182 183 LQEIKNSP-SVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVAR 258 (541)
Q Consensus 183 l~~i~~~~-~~~~~~ii~~Ll~~~~~~~~-~vr~~al~wL~~l~~~~~~~l~p~l--~~llp~ll~~l~d~~~~iR~~A~ 258 (541)
...-.... ..--...++.++..++++++ ..+..+...+..+... + .....+ ...+|.+++.+.+++++++..+.
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-T-THHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-c-ccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 52100000 00001345666665555544 4455566666666532 2 111111 36789999999998899988887
Q ss_pred HHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhcCC--CCHH
Q 009182 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSD--PSDE 335 (541)
Q Consensus 259 ~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~-l~~l~p~Ll~~L~D--~~~~ 335 (541)
.+...+.+.. ........++|.|.+.+.+++..+|..+...+..+....++..... -...+|.+++.|.+ .+++
T Consensus 249 ~~L~~l~~~~---~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 249 WTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHHTTC---TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCC---hhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 7776665332 1122346899999999999999999999999999988765433222 23467888888875 3479
Q ss_pred HHHHHHHHHHHHhcchh-------hHH--HHHHHHHHhccccc-hhhhhhHHHHHHHhhc
Q 009182 336 VVLLVLEVHACIAKDLQ-------HFR--QLVVFLVHNFRVDN-SLLEKRGALIIRRLCV 385 (541)
Q Consensus 336 V~~~~~~~L~~i~~~~~-------~f~--~~m~~LL~~~~~~~-~ll~~r~~~iir~Lc~ 385 (541)
++..++++|+.++.+.+ .+. ..++.|.+.++++. ..+...+...+++++.
T Consensus 326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 99999999999985321 111 35777888887654 2455556678888875
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.4e-13 Score=135.02 Aligned_cols=192 Identities=10% Similarity=0.072 Sum_probs=163.1
Q ss_pred HHhhcCCCHHHHHHH-HHHHH-HHhHhhcccc-hhcHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCC-chhh-hc
Q 009182 79 CKLSADSDANVQSAA-HLLDR-LVKDIVTESD-QFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPD-IDML-GF 152 (541)
Q Consensus 79 ~kl~~D~d~~VR~~A-~~L~~-l~kdi~~e~~-~~~l~~~iP~L~e~l-~d~~~~vR~~a~~~l~~L~~~~~-~~l~-~~ 152 (541)
...+++++...|.+| ..|.. ++++...-.. ......++..|...+ +|.|+.||..++.+++.+++..+ ..+. +|
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 445789999999999 77777 6653111000 123357799999999 79999999999999999998777 7888 99
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---
Q 009182 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG--- 228 (541)
Q Consensus 153 lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~--- 228 (541)
...+++.++..++|..+.||.++..++..+++.+.... ..+++.+++.+...+++++|.+|..++.||..++...+
T Consensus 102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999998764211 12388999999999999999999999999999998877
Q ss_pred cCcccch-hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 229 DQLVPYY-ADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 229 ~~l~p~l-~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
..+.+|+ +.++|.+.++|.|+++++|++|.++.+.+++.+++
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 4577899 99999999999999999999999999999999886
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.56 E-value=2.7e-12 Score=145.84 Aligned_cols=374 Identities=10% Similarity=0.056 Sum_probs=246.0
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcH
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l 112 (541)
++.++..+.+++..+|.+++..+.... +..+ . ...+|.|.+++.++++.||..| .+|..++++-.........
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~---~~~i-~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~ 190 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQD---DAEL-A--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 190 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHH---HHHH-H--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTC
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhh---HHHH-H--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhc
Confidence 477888999999999998887765432 1122 1 4678888888889999999999 8888776522111000112
Q ss_pred hhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCc--hhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 113 EEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 113 ~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~--~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
+..+|.|.+.+.+ .++.+|..++..+..++..... .+.. ...++.|+.++.+++++||..|..+|..+...-...
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 3568998888875 5999999999999998765321 1111 256788889999999999999999999987542110
Q ss_pred CCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc---CcccchhhHHHHHhhhcCCCChh-HHHHHHHHHHHH
Q 009182 190 PSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEEK-IRVVARETNEEL 264 (541)
Q Consensus 190 ~~~~-~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~---~l~p~l~~llp~ll~~l~d~~~~-iR~~A~~~~~~L 264 (541)
...- -...++.+++.++++++.++..++..+..++...++ .+. -...++.++..+.+.+++ .+..+..+...+
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL--ASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH--TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 0000 146889999999999999988877666655431110 111 124567777777776544 444555555544
Q ss_pred HHhhcCCCCCCC--hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 009182 265 RAIKADPADGFD--VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (541)
Q Consensus 265 ~~~i~~~~~~~~--l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~ 342 (541)
.. .....-. -..+++.|...+.+.+...+..++..+..+....+.. .....++|.|++.|++++++|+..+++
T Consensus 347 s~---~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~ 421 (780)
T 2z6g_A 347 SV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAG 421 (780)
T ss_dssp HT---STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hc---ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 31 1100000 1246789999998888889999999999898877542 235789999999999999999999999
Q ss_pred HHHHHhcchhhH------HHHHHHHHHhcccc--chhhhhhHHHHHHHhhccCCh----------hhHHHHHHHHhcccC
Q 009182 343 VHACIAKDLQHF------RQLVVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDA----------ERVYRELSTILEGEA 404 (541)
Q Consensus 343 ~L~~i~~~~~~f------~~~m~~LL~~~~~~--~~ll~~r~~~iir~Lc~~l~~----------e~i~~~l~~il~~~~ 404 (541)
+|+.++.+.... ...++.|++.+.+. ..-+...+...+++||..-.. ....+.+.++|....
T Consensus 422 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~ 501 (780)
T 2z6g_A 422 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501 (780)
T ss_dssp HHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 999999543211 13567777777542 224555677788888754321 234566777777766
Q ss_pred ChHHHHHHHHHhHHhhcC
Q 009182 405 DLDFACTMVQALNLILLT 422 (541)
Q Consensus 405 d~~f~~~~v~~L~~il~t 422 (541)
+.........+|.++-..
T Consensus 502 ~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 502 HWPLIKATVGLIRNLALC 519 (780)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 656666777777777653
No 32
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.53 E-value=8.3e-13 Score=150.46 Aligned_cols=250 Identities=17% Similarity=0.249 Sum_probs=203.5
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc--hhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~--~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
.++..+...+.|+..- ..|+.++..+++..+ ....+|+-.++|.++.+.+|.+..||++| .+.+.+++.+.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~---- 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN---- 127 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC----
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC----
Confidence 5778888888888555 888888888886653 35678988999999999999999999999 78888777443
Q ss_pred hhcHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 009182 109 QFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~-~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~ 187 (541)
..++..++|.|.+.+.+. .++.+..++..++.+....+..+...+|+++|.+-..+.|+.++|+++|.+++..++..++
T Consensus 128 ~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 355788999999999764 6999999999999999877888999999999999999999999999999999999987776
Q ss_pred CCCCCChHHHHHHHHHhcCCCC--------------------------------------HHHHHHHHHHHHHHHhhc--
Q 009182 188 NSPSVDYGRMAEILVQRAASPD--------------------------------------EFTRLTAITWINEFVKLG-- 227 (541)
Q Consensus 188 ~~~~~~~~~ii~~Ll~~~~~~~--------------------------------------~~vr~~al~wL~~l~~~~-- 227 (541)
+.|+++++|.|++++.+++ ..+++.+...+.+++++-
T Consensus 208 ---n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 208 ---NKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp ---CTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred ---CcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 4577777777777777665 245556666778888764
Q ss_pred CcCcccchhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhcC-CCC-------CCChHhHHHHHHHhcCC
Q 009182 228 GDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKAD-PAD-------GFDVGPILSIATRQLSS 290 (541)
Q Consensus 228 ~~~l~p~l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i~~-~~~-------~~~l~~il~~L~~~L~~ 290 (541)
+.+..||+|+++|.+-+.... ++||+|+.|.++...|.+.... .+. .-+...+...+.+.+..
T Consensus 285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (986)
T 2iw3_A 285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKD 356 (986)
T ss_dssp HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTT
T ss_pred HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcc
Confidence 567889999999999987765 7899999999999999877554 221 22456677777777754
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.52 E-value=1.4e-12 Score=141.06 Aligned_cols=313 Identities=17% Similarity=0.111 Sum_probs=216.3
Q ss_pred hhHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 33 IVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 33 ii~~vl~~l~-D~d~~VR~~A~eaL~~i~k~~~~~~~~~~-~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
++|+++++|+ +.++.+++.|+.+|.||+........... ...+|.|.+++.+++.+||..| .+|.++..+-..-...
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6899999997 45689999999999999853221111111 1368999999999999999999 8888776421110000
Q ss_pred hcHhhhHHHHHHHhcCCCH-----HHHHHHHHHHHHhhcCC-CchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 110 FSIEEFIPLLRERMNVLNP-----YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~-----~vR~~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
..-...+|.|...+...+. .++..++..+..+.... +..-......+++.|.+++.+++++|+..|+.+|..+.
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1112348888888876543 45666777777776542 22233455678888999999999999999999988875
Q ss_pred HHhcCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chhhHHHHHhhhcCCCChhHHHHHHHHH
Q 009182 184 QEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETN 261 (541)
Q Consensus 184 ~~i~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p-~l~~llp~ll~~l~d~~~~iR~~A~~~~ 261 (541)
..-.... ...-..++|.++..++++++.++..++..++.++...+..... .-...+|.+...+.++++++|..|..+.
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 2110000 0001346888999999999999999999988875432211100 1134567777788888999998887777
Q ss_pred HHHHHhhcCCCCC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHH
Q 009182 262 EELRAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEV 336 (541)
Q Consensus 262 ~~L~~~i~~~~~~---~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V 336 (541)
+.+. ..+... +--..++|.|.+.+.+.+..+|..|..+|..+......+...++ .+.+|.|++.|..+++++
T Consensus 341 ~nl~---a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 341 SNIT---AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHT---TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHH---cCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 6653 111000 00135889999999999999999999999999887654433222 357899999999999999
Q ss_pred HHHHHHHHHHHh
Q 009182 337 VLLVLEVHACIA 348 (541)
Q Consensus 337 ~~~~~~~L~~i~ 348 (541)
+..++++|..|.
T Consensus 418 ~~~~L~aL~nil 429 (510)
T 3ul1_B 418 IQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 34
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.51 E-value=4.3e-13 Score=127.26 Aligned_cols=183 Identities=23% Similarity=0.175 Sum_probs=150.8
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
...++.++..++|+++.||..|+.+|..+.. ++.++.|.+++.|+++.||..| .+|.++..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 5677889999999999999999999887542 2457888888999999999999 77665421
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
+..+|.|.+.+.|+++.||..++..++.+.. +..++.|.+++.|+++.||..+..+|+.+-
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------ 140 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------ 140 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------
Confidence 2348999999999999999999999998753 345667777999999999999999988762
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
-+..++.+...++++++.||..|+..++.+. -+..++.+...+.|+++.+|..|.++++.+
T Consensus 141 ----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 141 ----DERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1356788888899999999999999988762 277888899999999999999998887655
No 35
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.51 E-value=2.9e-12 Score=141.81 Aligned_cols=320 Identities=14% Similarity=0.102 Sum_probs=217.0
Q ss_pred hhhhcchhHHHHhhc--CCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHh
Q 009182 27 ETILQQIVPPVLNSF--SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l--~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi 103 (541)
....+.+.|++.+++ .|+++.||+.|+.+++.+.+... +..+. +..++.+.++++|+++.|+.+| .++..++++-
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 567888999999999 99999999999999999998543 33331 2457788888999999999999 6655554421
Q ss_pred hcccchhcHhhhHHHHHHHhcC-------------CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCC--
Q 009182 104 VTESDQFSIEEFIPLLRERMNV-------------LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS-- 168 (541)
Q Consensus 104 ~~e~~~~~l~~~iP~L~e~l~d-------------~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~-- 168 (541)
... -...++.++..|...+.. ++|-.+..++.++..+....+.+....+.++++.+++.+.|+.
T Consensus 219 ~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 219 PEE-FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKS 297 (621)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred hHH-HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccc
Confidence 110 001123334444443322 1688999999999888765445566677778888887665532
Q ss_pred ---------HHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhH
Q 009182 169 ---------HEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADI 238 (541)
Q Consensus 169 ---------~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~l 238 (541)
..|--+|.+++-.+ . +.+. ....++.+...+.++++.+|..++.|+..++...+. .+++.+.
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l----~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~ 369 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHH----D--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTH 369 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH----C--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHhc----C--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHH
Confidence 24555554544332 2 1222 466788888888889999999999999999876542 2345667
Q ss_pred HHHHhhhcC-CCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh
Q 009182 239 LGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (541)
Q Consensus 239 lp~ll~~l~-d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~ 317 (541)
.+.++.++. |+++.||..|.+... +++.+ -+.+.++..+.+.+.+.+.+.|..++.+++.++.+.++..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~---~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~--- 439 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLY---AMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY--- 439 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHH---HHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST---
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHH---HHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH---
Confidence 788888999 889999977766644 33432 2478899999999988888999999999999998876544
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHhcccc
Q 009182 318 LNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVD 368 (541)
Q Consensus 318 l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~-~~~~~f~~~m~~LL~~~~~~ 368 (541)
+..+..+++.+.+..+.|...++..+..+. .++..-+..+..+.+.+.++
T Consensus 440 -~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~ 490 (621)
T 2vgl_A 440 -TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAP 490 (621)
T ss_dssp -HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSS
T ss_pred -HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCc
Confidence 445556666666554444444444444444 23333334556666666544
No 36
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.51 E-value=4.6e-13 Score=126.06 Aligned_cols=186 Identities=23% Similarity=0.164 Sum_probs=152.3
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
.+-....+.+++.++|+++.||..|+.+|..+.. ++.++.|.+++.|+++.||..| .+|.++..
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 4445567889999999999999999999987542 2446778888899999999999 77655421
Q ss_pred cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 009182 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i 186 (541)
+..+|.|.+.+.|+++.||..++..++.+.. +..++.|.+++.|+++.||..+..+|+.+-
T Consensus 75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--- 135 (201)
T 3ltj_A 75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG--- 135 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT---
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 2348999999999999999999999998753 345666777999999999999999988763
Q ss_pred cCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 187 ~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
-+..++.+...++++++.+|..|+..++.+. -+..++.+...+.|+++.+|..|.++.+.+
T Consensus 136 -------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 136 -------DERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1457788889999999999999999998762 267888888888999999999998887765
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.49 E-value=2e-11 Score=131.95 Aligned_cols=382 Identities=14% Similarity=0.106 Sum_probs=255.3
Q ss_pred HHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcH-----hhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCc
Q 009182 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI-----EEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDI 147 (541)
Q Consensus 75 ~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l-----~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~ 147 (541)
++.+.+.+.+.|++++-.| ..+.+++. .+ .+.++ .-.||.|.+++.. .++.++..++.++.++++..+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls---~e-~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLS---RE-KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHT---CS-SCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc---CC-CCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 5666777888888888777 77766642 11 11122 2349999999974 6799999999999999876554
Q ss_pred hhhhchH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC-CChHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q 009182 148 DMLGFLP-DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS-VDYGRMAEILVQRAASPD-----EFTRLTAITWI 220 (541)
Q Consensus 148 ~l~~~lp-~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~-~~~~~ii~~Ll~~~~~~~-----~~vr~~al~wL 220 (541)
.-..... ..++.|.++|.+++.+||+.|..+|+.+...-..... .--...++.++..+++++ ..+...+...+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 3222222 3567788899999999999999999988631100000 001235677777776654 23455566566
Q ss_pred HHHHhhc-CcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC---CChHhHHHHHHHhcCCCCHHHH
Q 009182 221 NEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQLSSEWEATR 296 (541)
Q Consensus 221 ~~l~~~~-~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~---~~l~~il~~L~~~L~~~~~~~R 296 (541)
..++... +..-......++|.+...+.+++++++..|..+...+. ....+. +.-..+++.|.+.+.+.+..++
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~---~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 291 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT---DGPNERIEMVVKKGVVPQLVKLLGATELPIV 291 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT---SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh---hchhhhHHHHHhcccchhhhhhhcCCChhhh
Confidence 6655432 11222345789999999999999999988777766553 211000 0013467889999999999999
Q ss_pred HHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhh-HH-----HHHHHHHHhccccc
Q 009182 297 IEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH-FR-----QLVVFLVHNFRVDN 369 (541)
Q Consensus 297 ~aal~wL~~L~~~~~~~i~~~-l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~-f~-----~~m~~LL~~~~~~~ 369 (541)
..++..++.+..+.+...... -.+.+|.+.+.|++++++++..++|+|+.++.+... -. .+++.|++.+++..
T Consensus 292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence 999999999988776543222 235678888999999999999999999999953322 11 36778888887776
Q ss_pred hhhhhhHHHHHHHhhccCChhh--------HHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhH---HHHHHHHhhccC
Q 009182 370 SLLEKRGALIIRRLCVLLDAER--------VYRELSTILEGEADLDFACTMVQALNLILLTSSEL---SELRDLLKKSLV 438 (541)
Q Consensus 370 ~ll~~r~~~iir~Lc~~l~~e~--------i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el---~~~R~~L~~~~~ 438 (541)
.-++..+...+.+++..-+.+. +.+.|.+.|. ..|.+.+......|.+|+-.++.+ ..++..+.+
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee--- 447 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE--- 447 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH---
Confidence 6667778889999987655543 3456666664 467788888888898888655543 344444443
Q ss_pred CcchhHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHh
Q 009182 439 NPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSL 480 (541)
Q Consensus 439 ~~~~~~lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~ 480 (541)
-.+......|-..- | . +-|+.|++||.+|
T Consensus 448 -~ggl~~ie~Lq~~~--n--~--------~i~~~A~~iie~y 476 (510)
T 3ul1_B 448 -CGGLDKIEALQRHE--N--E--------SVYKASLNLIEKY 476 (510)
T ss_dssp -TTHHHHHHHGGGCS--S--H--------HHHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHcCC--C--H--------HHHHHHHHHHHHH
Confidence 22344444442222 2 1 3599999999877
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.48 E-value=2.3e-12 Score=142.66 Aligned_cols=356 Identities=11% Similarity=0.070 Sum_probs=234.5
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
....-+.+++++++++...|+.+..++..+++... + ...-+...+.|-++|+++.+|..| .++.++..
T Consensus 72 ~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e---~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~------- 140 (621)
T 2vgl_A 72 IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-E---LIRLINNAIKNDLASRNPTFMGLALHCIANVGS------- 140 (621)
T ss_dssp CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-H---HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------
T ss_pred CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-H---HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------
Confidence 44455778889999999999998877776654221 1 123456777788899999999988 77666532
Q ss_pred hhcHhhhHHHHHHHh--cCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 009182 109 QFSIEEFIPLLRERM--NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l--~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i 186 (541)
..-.+.++|.+.+++ .|.+|.||+.|+-++..+....+. .... +.+.+.+.++|.|+++.|+.+|..++..+...-
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 123567899999999 999999999999999988876553 3332 477888888999999999999988888876532
Q ss_pred cCCCCCChHHHHHHHHHhcC---C----------CCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCCh--
Q 009182 187 KNSPSVDYGRMAEILVQRAA---S----------PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE-- 251 (541)
Q Consensus 187 ~~~~~~~~~~ii~~Ll~~~~---~----------~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~-- 251 (541)
+......++.++..+-+.+. . +++..+...+.|+..+...........+..+++.+++.+.++..
T Consensus 219 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~ 298 (621)
T 2vgl_A 219 PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSK 298 (621)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCS
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccc
Confidence 21001113334443333221 1 15777888888887665432234444555666666665543210
Q ss_pred hHH--HH----HHHHHHHHHHhhcCCCCCCC-hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHH
Q 009182 252 KIR--VV----ARETNEELRAIKADPADGFD-VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDT 324 (541)
Q Consensus 252 ~iR--~~----A~~~~~~L~~~i~~~~~~~~-l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~ 324 (541)
.++ .. ..++...+... .. .-+ ....++.|...+.+.+..+|..|+.++..+....|.. +.+....+.
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l-~~---~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~~~~~~~~ 372 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHH-DS---EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EAVKTHIET 372 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HHHHTTHHH
T ss_pred cccccchHHHHHHHHHHHHHhc-CC---cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HHHHHHHHH
Confidence 111 11 11222222222 11 111 2456778888888888899999999999999887621 123445667
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhc
Q 009182 325 LLKALS-DPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILE 401 (541)
Q Consensus 325 Ll~~L~-D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~ 401 (541)
++.+|+ |++..||..+++++..++. +...+.++..|++.+.+...-.....-..|..+|....+ +.....+.+++.
T Consensus 373 i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~ 451 (621)
T 2vgl_A 373 VINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIR 451 (621)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 788888 9999999999999999984 567899999999988655443333333455566655433 556666666666
Q ss_pred ccCC
Q 009182 402 GEAD 405 (541)
Q Consensus 402 ~~~d 405 (541)
...+
T Consensus 452 ~~~~ 455 (621)
T 2vgl_A 452 IAGD 455 (621)
T ss_dssp HHGG
T ss_pred hhcc
Confidence 5444
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.48 E-value=4.1e-12 Score=140.68 Aligned_cols=346 Identities=13% Similarity=0.055 Sum_probs=232.5
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
.....+.+++++.+++...|+.+..++.+.++. .++. ..-+...+.+-++|+++.||..| .+|.++..
T Consensus 68 ~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~e~---~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~------- 136 (618)
T 1w63_A 68 AHFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQDV---HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS------- 136 (618)
T ss_dssp CGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CHHH---HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-CcHH---HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------
Confidence 445557788888899999998887766655432 1221 23467778888999999999988 77766532
Q ss_pred hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 009182 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
..-.+.++|.+..++.|++|.||+.|+.++..+....+.. ++.+++.+..++.|.++.|+..|..++..+...-..
T Consensus 137 ~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 1234677999999999999999999999999998765532 345666666799999999999998888877521100
Q ss_pred CCCCChHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhc---CCCC
Q 009182 189 SPSVDYGRMAEILVQRAA---------------SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI---SDKE 250 (541)
Q Consensus 189 ~~~~~~~~ii~~Ll~~~~---------------~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l---~d~~ 250 (541)
. ...+.+++|.++..+. .+++..+..++.+++.+....+. ..+-+-.+++.+++.. ...+
T Consensus 213 ~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 213 M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHHHTSCCSSTHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhccccccchH
Confidence 0 0123445555544322 34788888888888877653221 1111223344443322 1123
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCC-hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc
Q 009182 251 EKIRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 329 (541)
Q Consensus 251 ~~iR~~A~~~~~~L~~~i~~~~~~~~-l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L 329 (541)
..+.-.|.++.. .. ... -. ....++.|...+.+.+..+|..|+.+++.++...|..+.+|. +.++.++
T Consensus 291 ~aV~~ea~~~i~---~l-~~~---~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~----~~i~~~l 359 (618)
T 1w63_A 291 NAILYETVLTIM---DI-KSE---SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR----STIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHH---HS-CCC---HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH----HHHHHGG
T ss_pred HHHHHHHHHHHH---hc-CCC---HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH----HHHHHHc
Confidence 344444444332 21 111 01 124567778878888888999999999999999888776654 4567888
Q ss_pred CCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh--hhHHHHHHHHhcccC
Q 009182 330 SDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGEA 404 (541)
Q Consensus 330 ~D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~--e~i~~~l~~il~~~~ 404 (541)
+|++..||..+++++..++. +...+.++..+++.+.+...-.....-..|.++|....+ +.....+-+.+....
T Consensus 360 ~d~d~~Ir~~alelL~~l~~-~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~ 435 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVN-GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG 435 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCC-SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG
T ss_pred cCCChhHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc
Confidence 99999999999999999995 344688889999988766555555666678888887643 555555656655543
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.47 E-value=2.7e-12 Score=121.73 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=153.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~ 193 (541)
..+|.|.+.++++++.+|..++..++.+.. +..++.|.+.+.|+++.||..+..+|+.+.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---------- 78 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 78 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 348999999999999999999999998654 355677778999999999999998887763
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC
Q 009182 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (541)
Q Consensus 194 ~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~ 273 (541)
-+..++.++..++++++.+|..|+..++.+.. +..+|.+.+.+.|+++.+|..|..+.+.+.
T Consensus 79 ~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 140 (211)
T 3ltm_A 79 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 140 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------
Confidence 13567888888999999999999998886532 457788888899999999999988887661
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 274 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 274 ~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
-+..++.|.+.+.+++..+|.++...|+.+.. +..++.|.+.++|+++.||..+.++|..+..
T Consensus 141 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 141 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 14578889999999999999999999998842 5678888899999999999999999999984
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.47 E-value=9.2e-12 Score=135.21 Aligned_cols=314 Identities=16% Similarity=0.088 Sum_probs=217.0
Q ss_pred chhHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhchhhhh-HHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 32 ~ii~~vl~~l~-D~d~~VR~~A~eaL~~i~k~~~~~~~~-~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
.++|+++.+++ +.++.++..|+.+|.|++......... .-...+|.|.+++.+++.+||..| .+|.++..+-..-..
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 46789999996 566999999999999998543211110 112478999999999999999999 888877542111000
Q ss_pred hhcHhhhHHHHHHHhcCCCH-----HHHHHHHHHHHHhhcCC-CchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009182 109 QFSIEEFIPLLRERMNVLNP-----YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~-----~vR~~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~l 182 (541)
...-...+|.|...+...+. .+...++..+..+.... +..-.......++.|.+++.+++++|+..|+.+|..+
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 01112248888888876543 45666777777776543 2223345567888899999999999999999998887
Q ss_pred HHHhcCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc-cchhhHHHHHhhhcCCCChhHHHHHHHH
Q 009182 183 LQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARET 260 (541)
Q Consensus 183 l~~i~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~-p~l~~llp~ll~~l~d~~~~iR~~A~~~ 260 (541)
...-.... ...-..++|.++..+.++++.++..++..++.++...+..-. -.-...+|.+...+.++++++|..|..+
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence 63110000 000135678899999999999999999988887643221100 0123566777778888899999888777
Q ss_pred HHHHHHhhcCCCCC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh--hHHHHHHHHHhcCCCCHH
Q 009182 261 NEELRAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSDPSDE 335 (541)
Q Consensus 261 ~~~L~~~i~~~~~~---~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~--l~~l~p~Ll~~L~D~~~~ 335 (541)
.+.+.. .+... +--..++|.+...+.+.+..+|..|..+|..+..+...+...+ -.+.+|.|++.|..++++
T Consensus 359 L~nl~~---~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~ 435 (529)
T 3tpo_A 359 MSNITA---GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 435 (529)
T ss_dssp HHHHHT---SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHhc---ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHH
Confidence 666531 11000 0013578999999999999999999999998887754433222 235789999999999999
Q ss_pred HHHHHHHHHHHHh
Q 009182 336 VVLLVLEVHACIA 348 (541)
Q Consensus 336 V~~~~~~~L~~i~ 348 (541)
++..++++|..|.
T Consensus 436 i~~~~L~aL~nil 448 (529)
T 3tpo_A 436 IIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998886
No 42
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.46 E-value=4.1e-12 Score=147.33 Aligned_cols=352 Identities=14% Similarity=0.117 Sum_probs=236.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCH-HHHHHH-HHHHHHHhHhhccc-------------
Q 009182 43 DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA-NVQSAA-HLLDRLVKDIVTES------------- 107 (541)
Q Consensus 43 D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~-~VR~~A-~~L~~l~kdi~~e~------------- 107 (541)
+..+-||.-.|.++..+++...+ ..|++.++.+..+++.++. .+-... ..|..+.+++....
T Consensus 101 ~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~ 177 (980)
T 3ibv_A 101 DEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNL 177 (980)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHH
Confidence 34678999999999999876533 3466777777776643322 111111 23333334443210
Q ss_pred -----chhcHhhhHHHHHHHh----cCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009182 108 -----DQFSIEEFIPLLRERM----NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (541)
Q Consensus 108 -----~~~~l~~~iP~L~e~l----~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~ 178 (541)
...+++.+.+...+.+ ...++.++..++++++...+..+.+.+.. +.+++.+|+.+++ +++|.+|++|
T Consensus 178 lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~--~~~r~~A~ec 254 (980)
T 3ibv_A 178 VKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI--EELRCAACET 254 (980)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS--HHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC--hHHHHHHHHH
Confidence 0112333444444444 34788999999999999998877765544 7889999999987 6788888877
Q ss_pred HHHHHHHhc-------------------------------------------------CCCC-----------CChHHHH
Q 009182 179 LWEFLQEIK-------------------------------------------------NSPS-----------VDYGRMA 198 (541)
Q Consensus 179 L~~ll~~i~-------------------------------------------------~~~~-----------~~~~~ii 198 (541)
|.+++..-. ..+. .++..++
T Consensus 255 L~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll 334 (980)
T 3ibv_A 255 MTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLF 334 (980)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTH
T ss_pred HHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHH
Confidence 655542211 0000 2245788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhh----c-----CcCcccchhhHHHHHhhhcCCCCh---------h----HHHH
Q 009182 199 EILVQRAASPDEFTRLTAITWINEFVKL----G-----GDQLVPYYADILGAILPCISDKEE---------K----IRVV 256 (541)
Q Consensus 199 ~~Ll~~~~~~~~~vr~~al~wL~~l~~~----~-----~~~l~p~l~~llp~ll~~l~d~~~---------~----iR~~ 256 (541)
+.++.++.+++++|...++.++..+... . .....|++++++++++..|.+++. + .++
T Consensus 335 ~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e- 413 (980)
T 3ibv_A 335 PYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQE- 413 (980)
T ss_dssp HHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHH-
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHH-
Confidence 8999999999999988777544444432 1 244568999999999999997421 1 222
Q ss_pred HHHHHHHHHHhhcCCCCCCChH----hHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhChHHH------hhhhHHHHH
Q 009182 257 ARETNEELRAIKADPADGFDVG----PILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEV------LHFLNDIFD 323 (541)
Q Consensus 257 A~~~~~~L~~~i~~~~~~~~l~----~il~~L~~~L~---~~~~~~R~aal~wL~~L~~~~~~~i------~~~l~~l~p 323 (541)
.++..+.+.+.+..-+...-++ .+.+.+.+.+. +.+|..+++++..++.++++++... .++++.+++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ 493 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ 493 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence 2233333433332111001122 34445555553 3579999999999999999987532 256778888
Q ss_pred HHHHhcC-----CCCHHHHHHHHHHHHHHh----cchhhHHHHHHHHHH--hccccchhhhhhHHHHHHHhhccCCh---
Q 009182 324 TLLKALS-----DPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVH--NFRVDNSLLEKRGALIIRRLCVLLDA--- 389 (541)
Q Consensus 324 ~Ll~~L~-----D~~~~V~~~~~~~L~~i~----~~~~~f~~~m~~LL~--~~~~~~~ll~~r~~~iir~Lc~~l~~--- 389 (541)
.+.+.++ ++.|.||..+++++++++ .+++|+.++++.++. .+.+.++.++.|+...++++|+...+
T Consensus 494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~ 573 (980)
T 3ibv_A 494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV 573 (980)
T ss_dssp HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh
Confidence 8877765 889999999999999999 467899999999999 88877777889999999999988765
Q ss_pred ---hhHHHHHHHHhc
Q 009182 390 ---ERVYRELSTILE 401 (541)
Q Consensus 390 ---e~i~~~l~~il~ 401 (541)
+.|...+..+|.
T Consensus 574 ~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 574 NYTESSLAMLGDLLN 588 (980)
T ss_dssp SSHHHHHHHTTGGGC
T ss_pred hHHHHHHHHHHHhhc
Confidence 567777777766
No 43
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.45 E-value=8e-11 Score=127.77 Aligned_cols=379 Identities=14% Similarity=0.108 Sum_probs=253.5
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc----hhcHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCc
Q 009182 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD----QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDI 147 (541)
Q Consensus 74 i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~----~~~l~~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~~~~~~ 147 (541)
-++.+.+.+..++++++-.| ..+.+++. .+.. ...-...+|.|.+++. +.++.++..++.++..+++..+.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs---~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLS---REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHT---SSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHc---CCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 35666777888888888777 66655532 1110 1112345899999996 46799999999999999876554
Q ss_pred hhhhch-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh------HHHHHHHHHhcCCCCH-----HHHHH
Q 009182 148 DMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY------GRMAEILVQRAASPDE-----FTRLT 215 (541)
Q Consensus 148 ~l~~~l-p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~------~~ii~~Ll~~~~~~~~-----~vr~~ 215 (541)
.-...+ ...++.|.+++.+++.+||..|..+|+.+... . +.. ...++.++..+.+++. .+...
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~---~--~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA---G--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---C--HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc---C--HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 322222 24577788899999999999999999988621 1 111 2356777877766542 34445
Q ss_pred HHHHHHHHHhhc-CcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC---CChHhHHHHHHHhcCCC
Q 009182 216 AITWINEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQLSSE 291 (541)
Q Consensus 216 al~wL~~l~~~~-~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~---~~l~~il~~L~~~L~~~ 291 (541)
+...+..++... +..-......++|.+...+.+++++++..|..+...+.. ...+. +.-..+++.|.+.+.++
T Consensus 229 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~---~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD---GPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHS---SCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh---hhhhhHHHHHhccchHHHHHHhcCC
Confidence 555555554432 112223457889999999999999998877766655532 11000 00135678899999999
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHhh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhH-H-----HHHHHHHHh
Q 009182 292 WEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF-R-----QLVVFLVHN 364 (541)
Q Consensus 292 ~~~~R~aal~wL~~L~~~~~~~i~~-~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f-~-----~~m~~LL~~ 364 (541)
+..++..++..++.+..+.+..... .-.+.+|.|.+.|++++++++..++|+|+.++.+.... . .+++.|+.+
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 385 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence 9999999999999998877654322 23457888999999999999999999999999543221 1 367778888
Q ss_pred ccccchhhhhhHHHHHHHhhccCChhh--------HHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhH---HHHHHHH
Q 009182 365 FRVDNSLLEKRGALIIRRLCVLLDAER--------VYRELSTILEGEADLDFACTMVQALNLILLTSSEL---SELRDLL 433 (541)
Q Consensus 365 ~~~~~~ll~~r~~~iir~Lc~~l~~e~--------i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el---~~~R~~L 433 (541)
+.+...-++..+...+.++|..-+.+. +.+.|.+.|. ..|.+.+......|.+|+-.++.+ ..++..+
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 464 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 464 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHH
Confidence 877766667777888999987655553 3455666664 467788888888888888655433 3444444
Q ss_pred hhccCCcchhHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHh
Q 009182 434 KKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSL 480 (541)
Q Consensus 434 ~~~~~~~~~~~lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~ 480 (541)
.+ -.+......|-..- | . +-|+.|++||.+|
T Consensus 465 ee----~ggl~~ie~Lq~~~--n--~--------~i~~~A~~iie~y 495 (529)
T 3tpo_A 465 EE----CGGLDKIEALQRHE--N--E--------SVYKASLNLIEKY 495 (529)
T ss_dssp HH----TTCHHHHTGGGGCS--S--H--------HHHHHHHHHHHHH
T ss_pred HH----CCcHHHHHHHHcCC--C--H--------HHHHHHHHHHHHH
Confidence 33 12333333332211 2 1 3599999999886
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.45 E-value=1.9e-11 Score=141.81 Aligned_cols=370 Identities=12% Similarity=0.092 Sum_probs=229.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcC-----CCHHHHHHH-HHHHHHHhHhhccc---------c
Q 009182 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD-----SDANVQSAA-HLLDRLVKDIVTES---------D 108 (541)
Q Consensus 44 ~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D-----~d~~VR~~A-~~L~~l~kdi~~e~---------~ 108 (541)
..+.||...|.++..|++..-+ ..|+++++.+..+++. ++++.+.++ ..|..+++++.... .
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p---~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~ 191 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMP---DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVR 191 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTT---TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------
T ss_pred CCHHHHHHHHHHHHHHHHHhCc---cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHH
Confidence 3599999999999999876432 3478899999988865 366677777 77777776552110 0
Q ss_pred ---hhcHhhhHHHHHHHhcC---------------------------------------CCHHHHHHHHHHHHHhhcCCC
Q 009182 109 ---QFSIEEFIPLLRERMNV---------------------------------------LNPYVRQFLVGWITVLDSVPD 146 (541)
Q Consensus 109 ---~~~l~~~iP~L~e~l~d---------------------------------------~~~~vR~~a~~~l~~L~~~~~ 146 (541)
....+.+++.+...+.+ .++.+|..+++++..+.+.+.
T Consensus 192 ~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~ 271 (963)
T 2x19_B 192 TSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPD 271 (963)
T ss_dssp CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHcccc
Confidence 01122333333333322 245566677777766665432
Q ss_pred -chhhhchHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHH----hcCC--CCCChHHHHHHHHHhcCC-----
Q 009182 147 -IDMLGFLPDFLDGLFNM-------LSDSSHEIRQQADSALWEFLQE----IKNS--PSVDYGRMAEILVQRAAS----- 207 (541)
Q Consensus 147 -~~l~~~lp~~L~~L~~l-------L~D~~~eVR~~a~~~L~~ll~~----i~~~--~~~~~~~ii~~Ll~~~~~----- 207 (541)
.+...++..++++++.. ..+.+.+.....++.+..+.+. +... ...++..+++.++..+.+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 351 (963)
T 2x19_B 272 AQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYP 351 (963)
T ss_dssp GGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTT
T ss_pred cccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCC
Confidence 22223333444444322 2333445555555666666532 1110 113467888889888775
Q ss_pred CCHHHHHHHHHHHHHHHh-h----------cCcCcccchhhHHHHHhhhcCCCChh---------------HHHHHHHHH
Q 009182 208 PDEFTRLTAITWINEFVK-L----------GGDQLVPYYADILGAILPCISDKEEK---------------IRVVARETN 261 (541)
Q Consensus 208 ~~~~vr~~al~wL~~l~~-~----------~~~~l~p~l~~llp~ll~~l~d~~~~---------------iR~~A~~~~ 261 (541)
.++.++..++..+..+++ . ....+.|+++++++.+++.|.+++.+ -|..+.++.
T Consensus 352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L 431 (963)
T 2x19_B 352 VNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL 431 (963)
T ss_dssp TTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHH
Confidence 356667666643333443 2 12234689999999999999764321 133333444
Q ss_pred HHHHHhhcCCCCCCChHhHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHH
Q 009182 262 EELRAIKADPADGFDVGPILSIATRQL----SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (541)
Q Consensus 262 ~~L~~~i~~~~~~~~l~~il~~L~~~L----~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~ 337 (541)
..+....+.. -++.+++.+.+.+ .+.+|..|++++.+++.+++++.++..++++.+++.+ ..+.++++.||
T Consensus 432 ~~~~~~~~~~----~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr 506 (963)
T 2x19_B 432 MYVYEMLGAE----LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLA 506 (963)
T ss_dssp HHHHHHHTHH----HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHH
T ss_pred HHHHHHccHH----HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHH
Confidence 4443332210 1344555666666 6778999999999999999999887777888888854 45676788999
Q ss_pred HHHHHHHHHHhc----chhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh------hhHHHHHHHHhcccC-Ch
Q 009182 338 LLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGEA-DL 406 (541)
Q Consensus 338 ~~~~~~L~~i~~----~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~------e~i~~~l~~il~~~~-d~ 406 (541)
..++|+++++++ +.+++.++++.+++.+++ +.+...+...++.+|...+. +.+...+..++...+ +.
T Consensus 507 ~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~ 584 (963)
T 2x19_B 507 DTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKT 584 (963)
T ss_dssp HHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCh
Confidence 999999999983 468899999999998865 45667888888888875433 455555555555421 33
Q ss_pred HHHHHHHHHhHHhhcCc
Q 009182 407 DFACTMVQALNLILLTS 423 (541)
Q Consensus 407 ~f~~~~v~~L~~il~t~ 423 (541)
.--..++.++..+....
T Consensus 585 ~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 585 SQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 33444455555555443
No 45
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.45 E-value=3.8e-11 Score=140.80 Aligned_cols=333 Identities=13% Similarity=0.050 Sum_probs=217.9
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc-c--------------
Q 009182 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES-D-------------- 108 (541)
Q Consensus 45 d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~-~-------------- 108 (541)
++.||...|.++..|++.--+ ..|+++++.+...++ ++++.+.++ ..|..+++++..-. +
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p---~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l 188 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSM 188 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 478999999999998876422 458899999998886 566667777 77777777665210 0
Q ss_pred hhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHH--
Q 009182 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQ-- 184 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~-~lL~D~~~eVR~~a~~~L~~ll~-- 184 (541)
...++.+.+.+...+.+ .++.+|..+++++....+..+.+.... +.+++.++ .++. ++++|..|.+|+..++.
T Consensus 189 ~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~-~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 189 SKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE-TNILELLSTKFMT--SPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh-hhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC
Confidence 01244455555555554 567889999998887666544332110 23333333 1221 34444444444333331
Q ss_pred -------------------------------------------------------------H----hcCCC--CCChHHH
Q 009182 185 -------------------------------------------------------------E----IKNSP--SVDYGRM 197 (541)
Q Consensus 185 -------------------------------------------------------------~----i~~~~--~~~~~~i 197 (541)
. +...+ ..++..+
T Consensus 266 ~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 345 (1049)
T 3m1i_C 266 IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNA 345 (1049)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 1 11000 1123456
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHh------hcCcCcccchhhHHHHHhhhcCCCCh--------------------
Q 009182 198 AEILVQRAASPDEFTRLTAITWINEFVK------LGGDQLVPYYADILGAILPCISDKEE-------------------- 251 (541)
Q Consensus 198 i~~Ll~~~~~~~~~vr~~al~wL~~l~~------~~~~~l~p~l~~llp~ll~~l~d~~~-------------------- 251 (541)
++.++.....++.+++..|+.++..+++ .....+.|+++++++.+++.|.+++.
T Consensus 346 l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d 425 (1049)
T 3m1i_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1049)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccch
Confidence 7888887788888998888854444544 12344568999999999999876311
Q ss_pred --hHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhChHHHh-hhhHHHHHHHH
Q 009182 252 --KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLL 326 (541)
Q Consensus 252 --~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~--~~~~~~R~aal~wL~~L~~~~~~~i~-~~l~~l~p~Ll 326 (541)
+.|..+.++...+...... --++.+.+.+.+.+. ..+|..|++++..++.+++++.+... ++++.+++.++
T Consensus 426 ~~~~~~~~~~~L~~l~~~~~~----~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~ 501 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYLTHLNVI----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHH----HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHH
Confidence 1244455555555433211 012345566666664 46899999999999999988876653 45888888887
Q ss_pred HhcC-----CCCHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCC
Q 009182 327 KALS-----DPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (541)
Q Consensus 327 ~~L~-----D~~~~V~~~~~~~L~~i~----~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~ 388 (541)
.... |+.+.|+..++|++++++ .+.+++.++++.+++.+.+.++.++.++...+.++|...+
T Consensus 502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7442 456777778999999988 4678999999999999988777888999999999998654
No 46
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.45 E-value=1.4e-11 Score=139.97 Aligned_cols=352 Identities=13% Similarity=0.053 Sum_probs=229.0
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc-hhhh
Q 009182 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLG 151 (541)
Q Consensus 74 i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~-~l~~ 151 (541)
-++.+.+.+.+++..+|.++ ..+... ++. .-....+|.|...+.++++.+|..++..+..+....+. ..+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~-~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~ 188 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ-DDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh-hHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 35667777888888999887 554432 211 11245589999999999999999999999998875332 1222
Q ss_pred chHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 152 FLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 152 ~lp~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
..+..++.|.+.|.+ .++++|..|..+|..+...-.......-...+|.++..++++++.+|..|+..|..++...+..
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 346788888888864 4899999999999886432100000001357899999999999999999999999988764432
Q ss_pred cccch-hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC--CCChHhHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Q 009182 231 LVPYY-ADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD--GFDVGPILSIATRQLSSEW-EATRIEALHWISTL 306 (541)
Q Consensus 231 l~p~l-~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~--~~~l~~il~~L~~~L~~~~-~~~R~aal~wL~~L 306 (541)
..... ...+|.++..+.+++.+++..|..+...+.. .+... .+--...++.|.+.+++.+ ...+..+...+..+
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 22222 5789999999999888888888777665531 00000 0000245677777776544 44566777777777
Q ss_pred HhhChHHHhh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHhccccchhhhhhHHHHHHH
Q 009182 307 LNRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL---QHFRQLVVFLVHNFRVDNSLLEKRGALIIRR 382 (541)
Q Consensus 307 ~~~~~~~i~~-~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~---~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~ 382 (541)
.. ++..-.. .-...+|.|+..+.++++.++..+++++..++.+. .....+++.|++++++...-+...+..++.+
T Consensus 347 s~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 347 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 75 3322111 12457899999999999999999999999999422 2346789999998877766666777888888
Q ss_pred hhccCCh-------hhHHHHHHHHhcccCCh-HHHHHHHHHhHHhhcCcHhHHHHHHHHhh
Q 009182 383 LCVLLDA-------ERVYRELSTILEGEADL-DFACTMVQALNLILLTSSELSELRDLLKK 435 (541)
Q Consensus 383 Lc~~l~~-------e~i~~~l~~il~~~~d~-~f~~~~v~~L~~il~t~~el~~~R~~L~~ 435 (541)
||..-.. ....+.+.+.|....+. ......+.+|.++-...++-...|..+.+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 8774221 23556666666654433 45555666777765444554445555544
No 47
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.44 E-value=7e-10 Score=128.63 Aligned_cols=364 Identities=11% Similarity=0.098 Sum_probs=245.0
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhc
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
.+++..+++ ++..+.++++.||..+|.+++..++..+.. ..+++.+++.+.+.+.| +.|+..| .++.+++++...
T Consensus 485 ~~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~ 560 (963)
T 2x19_B 485 SDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY 560 (963)
T ss_dssp CSHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred hHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 356666666 445667779999999999999988765432 25678888998888876 7888888 889998875432
Q ss_pred ccchhcHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCC-chhhhchHHHHHHHHHHcC-----CCCHHHHH---H
Q 009182 106 ESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLS-----DSSHEIRQ---Q 174 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~~~-~~l~~~lp~~L~~L~~lL~-----D~~~eVR~---~ 174 (541)
.-. ..++.++..+...+.. .+...|..++++++.+....+ .+..+|+..+++.+...+. +.+++.|. .
T Consensus 561 ~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 639 (963)
T 2x19_B 561 DLP-PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVH 639 (963)
T ss_dssp GCT-TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHH
T ss_pred HHH-hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 211 2356666666666664 467999999999999887665 6788999999988876553 23566555 4
Q ss_pred HHHHHHHHHHHhcCCCC-----------------C-----ChHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 175 ADSALWEFLQEIKNSPS-----------------V-----DYGRMAEILVQRAA--SPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 175 a~~~L~~ll~~i~~~~~-----------------~-----~~~~ii~~Ll~~~~--~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
...+++.+.+.++.... . ..+.++|.+...+. ..+..+...++..++.++...|+.
T Consensus 640 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 640 ILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence 45666667776653210 1 13566666554432 246788888888899998889999
Q ss_pred cccchhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhcCCCCCC-ChHhHHHHHHHh----c---CCCCHHHHHHHHH
Q 009182 231 LVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGF-DVGPILSIATRQ----L---SSEWEATRIEALH 301 (541)
Q Consensus 231 l~p~l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i~~~~~~~-~l~~il~~L~~~----L---~~~~~~~R~aal~ 301 (541)
+.||+|.+++.++..... ..+. .....+.+.+..+..+... .+.+++..+.+. + ..+..++|.+.+.
T Consensus 720 ~~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ 795 (963)
T 2x19_B 720 FAPMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQ 795 (963)
T ss_dssp TGGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHH
Confidence 999999999988876554 2232 2333444433233221111 123333333222 2 1245789999999
Q ss_pred HHHHHHhhChHHHh--hh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-----------hhhHHHHHHHHHHhccc
Q 009182 302 WISTLLNRHRTEVL--HF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----------LQHFRQLVVFLVHNFRV 367 (541)
Q Consensus 302 wL~~L~~~~~~~i~--~~-l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~-----------~~~f~~~m~~LL~~~~~ 367 (541)
.+..+...+|..+. +. ++.+++.++..|++++.++...+++.+..+.+. ..++..++..++..+.+
T Consensus 796 ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 875 (963)
T 2x19_B 796 LLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGG 875 (963)
T ss_dssp HHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999998875 55 888999999999999999999999999998732 24566667677665542
Q ss_pred -c-chhhhhhHHHHHHHhhccCChhhHHHHHHHHhc
Q 009182 368 -D-NSLLEKRGALIIRRLCVLLDAERVYRELSTILE 401 (541)
Q Consensus 368 -~-~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~ 401 (541)
. +..++ ..+.+++.|... .++.+...+.+.+.
T Consensus 876 ~~~~~~~~-~~~~il~~l~~~-~~~~~~~~l~~~l~ 909 (963)
T 2x19_B 876 QASRSLMD-CFADILFALNKH-CFSLLSMWIKEALQ 909 (963)
T ss_dssp TSCGGGHH-HHHHHHHHHHHH-SHHHHHHHHHHHTC
T ss_pred cCChhHHH-HHHHHHHHHHHH-ChHHHHHHHHHHhc
Confidence 2 33333 344556665443 34555666666664
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.43 E-value=7e-11 Score=127.11 Aligned_cols=309 Identities=12% Similarity=0.006 Sum_probs=201.7
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhh-HHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~-~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
..+|+++..++++++.+|..|+.++.+++......... .-...+|.|.+++.+++..++..+ .+|..+..+-......
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 47789999999999999999999999998753221110 113678999999999999999887 6766554310000000
Q ss_pred hcHhhhHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 009182 110 FSIEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~-~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
..-...+|.+.+.+++.++ ..+..++..+..+...+...-.-.-...++.|..++.++++++|..+..++..+......
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 260 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence 0112347778788877544 555667788888876543211111135677888899999999999999999888754321
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc-hhhHHHHHhhhcCC--CChhHHHHHHHHHHHHH
Q 009182 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISD--KEEKIRVVARETNEELR 265 (541)
Q Consensus 189 ~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~-l~~llp~ll~~l~d--~~~~iR~~A~~~~~~L~ 265 (541)
.......+|.+++.++++++.+|..|+..+..++...+...... -...+|.++..+.+ +++++|..|..+.+.+.
T Consensus 261 --~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 261 --QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp --CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred --hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 12357899999999999999999999988888755322111101 12456777777765 34788888887777662
Q ss_pred HhhcCCCCC------CChHhHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhcCCCCHHHH
Q 009182 266 AIKADPADG------FDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVV 337 (541)
Q Consensus 266 ~~i~~~~~~------~~l~~il~~L~~~L~~~~-~~~R~aal~wL~~L~~~~~~~i~~~-l~~l~p~Ll~~L~D~~~~V~ 337 (541)
..++.. +--...++.|.+.+.+++ +.+|..++..+..+....... ... -.+.+|.+++.|.++++++|
T Consensus 339 ---~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~ 414 (529)
T 1jdh_A 339 ---SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQ 414 (529)
T ss_dssp ---SSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred ---cCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHH
Confidence 221110 000135788899998765 689999998888887643322 222 23688999999999888999
Q ss_pred HHHHHHHHH
Q 009182 338 LLVLEVHAC 346 (541)
Q Consensus 338 ~~~~~~L~~ 346 (541)
..++|+++.
T Consensus 415 ~~a~~~l~n 423 (529)
T 1jdh_A 415 RRTSMGGTQ 423 (529)
T ss_dssp ---------
T ss_pred HHHhcccCc
Confidence 888887776
No 49
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.43 E-value=1.1e-11 Score=139.20 Aligned_cols=377 Identities=12% Similarity=0.031 Sum_probs=258.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-h---hhh--hHHHHHHHHHHHhhcCC--CHHHHHHH-HHHHHHHhHhhc
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVR-G---DFI--IFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~-~---~~~--~~~~~i~~~L~kl~~D~--d~~VR~~A-~~L~~l~kdi~~ 105 (541)
|++...++.++..+|..|+.+|-+++...+ . ... .....+.+.+.+++.++ |.++|+.| ++|..+..+--.
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 888888888999999998888887764321 0 111 23467899999998887 88888888 888776431100
Q ss_pred ccchhc-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch--------hhhc----------------h-------
Q 009182 106 ESDQFS-IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--------MLGF----------------L------- 153 (541)
Q Consensus 106 e~~~~~-l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~--------l~~~----------------l------- 153 (541)
. .... -..++|.|.+++.++++.+.+.+...++++..-.+.. +..| .
T Consensus 413 k-~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~V 491 (810)
T 3now_A 413 K-EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491 (810)
T ss_dssp H-HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHH
T ss_pred H-HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHH
Confidence 0 0111 1356999999999999999999999999998743210 0000 0
Q ss_pred --HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 009182 154 --PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (541)
Q Consensus 154 --p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~---~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~ 228 (541)
...++.|.++++.+++++|+.|..+|..+... ....+ -...+|.|+..++++++..|..|...|..++....
T Consensus 492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 492 ANEGITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 03467788899999999999999999988621 00011 14578888888888899999999999988875433
Q ss_pred cCc-cc--chhhHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhcCCCC---CCChHhHHHHHHHhcCCCCHHHHHHHHH
Q 009182 229 DQL-VP--YYADILGAILPCISDK-EEKIRVVARETNEELRAIKADPAD---GFDVGPILSIATRQLSSEWEATRIEALH 301 (541)
Q Consensus 229 ~~l-~p--~l~~llp~ll~~l~d~-~~~iR~~A~~~~~~L~~~i~~~~~---~~~l~~il~~L~~~L~~~~~~~R~aal~ 301 (541)
+.. .+ -....+|.++..+..+ ....+..|..++..+ ...++. .+--...++.|.+.+.+++..+|.+|..
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NL---a~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL---ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHH---TTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHH---hcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 222 11 1234678888888643 223233344444433 221100 0000246788888888888889999999
Q ss_pred HHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-ch----hhHH--HHHHHHHHhccccchhh
Q 009182 302 WISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DL----QHFR--QLVVFLVHNFRVDNSLL 372 (541)
Q Consensus 302 wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-~~----~~f~--~~m~~LL~~~~~~~~ll 372 (541)
.++.+... ++....+. .+.+|.|++.+..++..++..++|+|+.++. ++ ..++ ..++.|.+++.++..-+
T Consensus 646 ~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~v 724 (810)
T 3now_A 646 CLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724 (810)
T ss_dssp HHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHH
T ss_pred HHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHH
Confidence 99998873 44444444 3689999999999999999999999999995 22 2232 47788888888887778
Q ss_pred hhhHHHHHHHhhccCCh--------hhHHHHHHHHhccc--CChHHHHHHHHHhHHhh
Q 009182 373 EKRGALIIRRLCVLLDA--------ERVYRELSTILEGE--ADLDFACTMVQALNLIL 420 (541)
Q Consensus 373 ~~r~~~iir~Lc~~l~~--------e~i~~~l~~il~~~--~d~~f~~~~v~~L~~il 420 (541)
+.++...+.+++.. +. ..+.+.+.+++... ++-++....++.|..++
T Consensus 725 q~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 725 QHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 88999999999762 33 24455566666543 46788888888876665
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.42 E-value=1.3e-11 Score=116.12 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=152.5
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~ 192 (541)
....|.+.+.++++++.+|..++.+++.+.. +..++.|.+++.|+++.||..+..+|+.+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 3457888999999999999999999997654 244566777999999999999988887652
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCC
Q 009182 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (541)
Q Consensus 193 ~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~ 272 (541)
-+..++.++..++++++.+|..|+..++.+.. +..++.+...+.|+++.+|..|..+.+.+.
T Consensus 74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------- 135 (201)
T 3ltj_A 74 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------- 135 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 13567888888999999999999998876522 457788888889999999999988887662
Q ss_pred CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 273 ~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
-+..++.|.+.+.++++.+|.+|+.+++.+. -+..++.+.+.++|+++.||..+.++|+++.
T Consensus 136 ----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 ----DERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1467888999999999999999999998883 2457788888889999999999999998865
No 51
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.40 E-value=1.3e-11 Score=138.81 Aligned_cols=313 Identities=11% Similarity=0.080 Sum_probs=223.8
Q ss_pred hcchhHHHHhhcCCC--CHHHHHHHHHHHHHHHHHh--chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhh
Q 009182 30 LQQIVPPVLNSFSDQ--DSRVRYYACEALYNIAKVV--RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (541)
Q Consensus 30 l~~ii~~vl~~l~D~--d~~VR~~A~eaL~~i~k~~--~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~ 104 (541)
+..+++.+.+.+.++ |..+|..|+++|+.++... +..+. .-...+|.|.+++..+++.+..+| ..|.++..+--
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv-~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI-EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHH-HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHH-HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 456678888888887 8999999999999987432 11221 113578888888888899999988 88888765210
Q ss_pred cc------------cc------------hh--------cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhc
Q 009182 105 TE------------SD------------QF--------SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (541)
Q Consensus 105 ~e------------~~------------~~--------~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~ 152 (541)
.+ ++ ++ .-...+|.|.+++.++++.+|..++..+++++...+ ....
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~--~r~~ 531 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE--LRGK 531 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH--HHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--HHHH
Confidence 00 00 00 011359999999999999999999999999985422 2221
Q ss_pred h--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC---ChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhh
Q 009182 153 L--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV---DYGRMAEILVQRAASP-DEFTRLTAITWINEFVKL 226 (541)
Q Consensus 153 l--p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~---~~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~ 226 (541)
+ -..++.|..++.+.++.+|+.|..+|..+.......... .....+|.|+..+.+. +...+..|+..+..++..
T Consensus 532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 1 134677778999999999999999999987542100001 1235788888888755 445566788888887765
Q ss_pred cCc---CcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC--C-CChHhHHHHHHHhcCCCCHHHHHHHH
Q 009182 227 GGD---QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD--G-FDVGPILSIATRQLSSEWEATRIEAL 300 (541)
Q Consensus 227 ~~~---~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~--~-~~l~~il~~L~~~L~~~~~~~R~aal 300 (541)
.+. .+. -...+|.+...+.++++.+|..|.++.+.+.. .+.. . .+-...++.|...+.+++..+|.+|.
T Consensus 612 ~d~~~~~Ii--~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~---~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa 686 (810)
T 3now_A 612 NESVRQRII--KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM---SEDVIKMFEGNNDRVKFLALLCEDEDEETATACA 686 (810)
T ss_dssp CHHHHHHHH--HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT---SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHH
T ss_pred CHHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC---ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHH
Confidence 321 111 12467788888888889999999888776631 1000 0 00025788999999999999999999
Q ss_pred HHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 009182 301 HWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (541)
Q Consensus 301 ~wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~ 350 (541)
.+|..+..+.+....... .+.+|.|+..|.++++++++.++|++..+..+
T Consensus 687 ~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 687 GALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 999999998776655444 47999999999999999999999999999853
No 52
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.39 E-value=1.4e-10 Score=134.72 Aligned_cols=364 Identities=10% Similarity=0.049 Sum_probs=227.8
Q ss_pred hhhhcchhHHHHhhcC--CCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHh
Q 009182 27 ETILQQIVPPVLNSFS--DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~--D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi 103 (541)
.++++.+++ ++..+. |+++.||+.||.+++.+++...... .+++.+++.+.+.+ | +.|+..| .++.+++++.
T Consensus 500 ~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 500 KRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp -CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 367777777 555555 7899999999999999887765332 67889999998888 4 6788888 8888888754
Q ss_pred hcccchhcHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcC-CCchhhhchHHHHHHHHHHcC----CC--CHHHHHH
Q 009182 104 VTESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNMLS----DS--SHEIRQQ 174 (541)
Q Consensus 104 ~~e~~~~~l~~~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~-~~~~l~~~lp~~L~~L~~lL~----D~--~~eVR~~ 174 (541)
-.+- ...++.++..+.+.+.. .+...|..++++++.+... ++.+..+|+..+++.+.+.+. .+ +++-+..
T Consensus 575 ~~~l-~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~ 653 (971)
T 2x1g_F 575 QLQL-KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIR 653 (971)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHH
T ss_pred HHhc-cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Confidence 3221 12345556666666665 4679999999999988764 457778888888877775442 32 3434444
Q ss_pred HHHHH---HHHHHHhcCC----------CCC---ChHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhcCcCcccchh
Q 009182 175 ADSAL---WEFLQEIKNS----------PSV---DYGRMAEILVQRAA--SPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (541)
Q Consensus 175 a~~~L---~~ll~~i~~~----------~~~---~~~~ii~~Ll~~~~--~~~~~vr~~al~wL~~l~~~~~~~l~p~l~ 236 (541)
...++ +.+++.++.. .++ ..+.++|.+..... ..++.+...++..++.++...|..+.||+|
T Consensus 654 ~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~ 733 (971)
T 2x1g_F 654 TIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ 733 (971)
T ss_dssp HHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH
T ss_pred HHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH
Confidence 44444 4444444432 111 24667777666543 236788888998999988888888999999
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC-CChHhHHHH----HHHhcCC-------CCHHHHHHHHHHHH
Q 009182 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADG-FDVGPILSI----ATRQLSS-------EWEATRIEALHWIS 304 (541)
Q Consensus 237 ~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~-~~l~~il~~----L~~~L~~-------~~~~~R~aal~wL~ 304 (541)
.+++.++..+..+.. ..+....+.+.+..+.+... -.+.+++.. ....+.. ++.+++.+.+..++
T Consensus 734 ~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~ 810 (971)
T 2x1g_F 734 DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLT 810 (971)
T ss_dssp HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHH
Confidence 999999988765321 22344444444433332110 012333332 2222322 35678999999999
Q ss_pred HHHhhChHHHh--hh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc---chh--------hHHHHHHHHHHhcc--cc
Q 009182 305 TLLNRHRTEVL--HF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK---DLQ--------HFRQLVVFLVHNFR--VD 368 (541)
Q Consensus 305 ~L~~~~~~~i~--~~-l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~---~~~--------~f~~~m~~LL~~~~--~~ 368 (541)
.+..++|..+. ++ ++.+++..+..|.-+++.+...++..|..+.. ... +...++..++..+. ..
T Consensus 811 ~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~ 890 (971)
T 2x1g_F 811 QIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTP 890 (971)
T ss_dssp HHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCC
Confidence 99999999987 77 89999999999987777777788888777542 112 22333333333221 12
Q ss_pred chhhhhhHHHHHHHhhccCChhhHHHHHHHHhc
Q 009182 369 NSLLEKRGALIIRRLCVLLDAERVYRELSTILE 401 (541)
Q Consensus 369 ~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~ 401 (541)
+..++. .+.+++.|....+ +.....+.+.+.
T Consensus 891 ~s~~~~-~a~~l~~l~~~~~-~~~~~~l~~~l~ 921 (971)
T 2x1g_F 891 RSQVDK-FADILLAMNRKYA-AEMAVWMKSLMS 921 (971)
T ss_dssp GGGGGG-GHHHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred hhHHHH-HHHHHHHHHHHCc-HHHHHHHHHHhc
Confidence 444443 3456666655433 334455555553
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.38 E-value=3e-11 Score=116.68 Aligned_cols=236 Identities=15% Similarity=0.115 Sum_probs=170.1
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchh
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~-~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~ 110 (541)
.+|.++..++++++.+|..|+.++.+++........... ..+++.|.+++.+++++||..| .+|..+..+-.......
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 468899999999999999999999998854321111111 2578999999999999999999 77777654211100111
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh-hchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~-~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
.-...+|.+...++++++.+|..++..+..+....+..-. ..-...++.|.+++.++++++|..++.+|..+...-...
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1234699999999999999999999999999864432211 111356788888999999999999999999886311000
Q ss_pred C-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc-hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 009182 190 P-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAI 267 (541)
Q Consensus 190 ~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~-l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~ 267 (541)
. ...-...+|.++..++++++.+|..|+..+..++...+...... -...+|.+...+.++++++|+.|..+.+.+...
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 0 00013588999999999999999999999988875322211111 246789999999999999999999988887654
Q ss_pred h
Q 009182 268 K 268 (541)
Q Consensus 268 i 268 (541)
.
T Consensus 243 ~ 243 (252)
T 4hxt_A 243 G 243 (252)
T ss_dssp C
T ss_pred C
Confidence 3
No 54
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.38 E-value=1.2e-10 Score=135.21 Aligned_cols=352 Identities=12% Similarity=0.075 Sum_probs=232.1
Q ss_pred hhhhcchhHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHh------------chhhhhHHHHHHHHHHHhhcCCC---
Q 009182 27 ETILQQIVPPVLNSFS-----DQDSRVRYYACEALYNIAKVV------------RGDFIIFFNQIFDALCKLSADSD--- 86 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~-----D~d~~VR~~A~eaL~~i~k~~------------~~~~~~~~~~i~~~L~kl~~D~d--- 86 (541)
.+++..+++.++.+.. ..+.+|+..|++-.+.+++.. .....+++..+++.+.+.+.-|+
T Consensus 343 ~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~ 422 (971)
T 2x1g_F 343 SILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS 422 (971)
T ss_dssp HHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT
T ss_pred cHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3566677787777663 357889999999888877622 12234778888888887653221
Q ss_pred ------------HHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcCCCch
Q 009182 87 ------------ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-----LNPYVRQFLVGWITVLDSVPDID 148 (541)
Q Consensus 87 ------------~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d-----~~~~vR~~a~~~l~~L~~~~~~~ 148 (541)
.+.|.++ +.+..++. ..+...++.+++.+.+.+.. .++..|+.++-.++.++.....+
T Consensus 423 ~~~~d~~e~~~f~~~R~~~~~~l~~~~~----~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~ 498 (971)
T 2x1g_F 423 LAKWSSDDLECFRCYRQDISDTFMYCYD----VLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE 498 (971)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHHHHHHHT----TCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh
Confidence 1345555 44444333 22334566777777777754 68899999999999998877666
Q ss_pred hhhchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 009182 149 MLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~ 227 (541)
...++|.+++.+..+.. |+++-||..++.+++++.+.+...+ .+++.++|.++..+ + +.|+..|+..+..+++.+
T Consensus 499 ~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 499 EKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp --CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 66888888884444442 6799999999999999998876543 46899999999988 3 678999999999999988
Q ss_pred CcCcccchhhHHHHHhhhcCCC--ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHH----HHhcCCC--CHHHHHHH
Q 009182 228 GDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKADPADGFDVGPILSIA----TRQLSSE--WEATRIEA 299 (541)
Q Consensus 228 ~~~l~p~l~~llp~ll~~l~d~--~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L----~~~L~~~--~~~~R~aa 299 (541)
+..+.||++.++..+...+... +.+.+..+.++.+.+...+......-.+..+++.+ .+..... +...+...
T Consensus 575 ~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 654 (971)
T 2x1g_F 575 QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRT 654 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 8899999999999999998873 46677777777777755432110001123333333 3333332 34345555
Q ss_pred HHHHHHHHhhC----------------hHHHhhhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhc-----chhhHHH
Q 009182 300 LHWISTLLNRH----------------RTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACIAK-----DLQHFRQ 356 (541)
Q Consensus 300 l~wL~~L~~~~----------------~~~i~~~l~~l~p~Ll~~L~D--~~~~V~~~~~~~L~~i~~-----~~~~f~~ 356 (541)
..+++.+.... ++.+.++.+.++|.+.+.+.+ .++.|+..+++++++++. ..+|+.+
T Consensus 655 ~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~ 734 (971)
T 2x1g_F 655 IFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD 734 (971)
T ss_dssp HHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH
T ss_pred HHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH
Confidence 55555444331 234567788899988888754 367899999999999762 3568888
Q ss_pred HHHHHHHhccccchhhhhhHHHHHHHhhccCCh
Q 009182 357 LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (541)
Q Consensus 357 ~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~ 389 (541)
+++.++..+.+.+. ...-..+.+++..+|.
T Consensus 735 ~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 735 LCLFIVASFQTRCC---APTLEISKTAIVMFFK 764 (971)
T ss_dssp HHHHHHHHCC--CC---HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcCCc---hHHHHHHHHHHHHhCC
Confidence 88888888876532 1122345555555555
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.36 E-value=1.3e-10 Score=129.11 Aligned_cols=373 Identities=14% Similarity=0.073 Sum_probs=242.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcCCCCC
Q 009182 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSV 192 (541)
Q Consensus 115 ~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~-~~eVR~~a~~~L~~ll~~i~~~~~~ 192 (541)
.+|.|.+.++++++.+|..++..+..++...+.. .....+..++.|.+.|.+. ++++|..|+.+|..+...-......
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 4899999999999999999999999998765422 1223356778888888754 8999999989888764321000000
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc-hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC
Q 009182 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (541)
Q Consensus 193 ~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~-l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~ 271 (541)
.-...+|.++..++++++.+|..|+..+..++...+...... -...+|.++..+.+.+++++..+..+...+... +.
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~ 172 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG--NQ 172 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--CH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc--Cc
Confidence 013588999999999999999999999999887654322222 257899999999998888887776666655310 00
Q ss_pred CC--CCChHhHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhChHHHhh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009182 272 AD--GFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (541)
Q Consensus 272 ~~--~~~l~~il~~L~~~L~~~~-~~~R~aal~wL~~L~~~~~~~i~~-~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i 347 (541)
.. .+--...++.|.+.+.+.+ ...+..++..+..+.. ++..-.. .-...+|.+++.+.++++.++..++++|..+
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 00 0001245778888886543 5577888888888775 3322111 1235789999999999999999999999999
Q ss_pred hcc---hhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCCh-------hhHHHHHHHHhcccCC-hHHHHHHHHHh
Q 009182 348 AKD---LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-------ERVYRELSTILEGEAD-LDFACTMVQAL 416 (541)
Q Consensus 348 ~~~---~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~-------e~i~~~l~~il~~~~d-~~f~~~~v~~L 416 (541)
+.+ .......++.|+++++++..-+...+..++.+||..-.. ..+.+.+...+....+ -......+.+|
T Consensus 252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 943 223457889999988877666667778889898874211 2355666666665443 45556666777
Q ss_pred HHhhcCcHhHHHHHHHHhhccCCcchhHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHH---H
Q 009182 417 NLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ---L 493 (541)
Q Consensus 417 ~~il~t~~el~~~R~~L~~~~~~~~~~~lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~~~~~~~~~~~l~~---i 493 (541)
.++--..++-...|..+.+ ..+.+.+..+.+.-.+.++ -+-|...+..++.-+-+...+++ +
T Consensus 332 ~nL~~~~~~~~~~q~~v~~----~~~l~~L~~lL~~~~~~~v-----------~~~a~~~L~nLa~~~~~~~~i~~~~~i 396 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRL----HYGLPVVVKLLHPPSHWPL-----------IKATVGLIRNLALCPANHAPLREQGAI 396 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHH----TTHHHHHHHTTSTTCCHHH-----------HHHHHHHHHHHTTSGGGHHHHHHTTHH
T ss_pred HHHhcCCchHHHHHHHHHH----ccChHHHHHHhCccCchHH-----------HHHHHHHHHHHccCHHHHHHHHHcCCH
Confidence 7665433443344554443 2244444444443211111 12233344444433333333443 8
Q ss_pred HHHHHHhhhhhh
Q 009182 494 DKLIRLLETPIF 505 (541)
Q Consensus 494 d~lvql~esp~f 505 (541)
+.||+++.++-+
T Consensus 397 ~~Lv~lL~~~~~ 408 (644)
T 2z6h_A 397 PRLVQLLVRAHQ 408 (644)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhccch
Confidence 999999988753
No 56
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.35 E-value=2.2e-10 Score=133.05 Aligned_cols=324 Identities=9% Similarity=0.089 Sum_probs=214.7
Q ss_pred hcchhHHHHhhcC------CCCHHHHHHHHHHHHHHHHHh---c-h--------hhhhHHH-HHHHHHHHhhcCC---CH
Q 009182 30 LQQIVPPVLNSFS------DQDSRVRYYACEALYNIAKVV---R-G--------DFIIFFN-QIFDALCKLSADS---DA 87 (541)
Q Consensus 30 l~~ii~~vl~~l~------D~d~~VR~~A~eaL~~i~k~~---~-~--------~~~~~~~-~i~~~L~kl~~D~---d~ 87 (541)
++.+.+.+...++ +++|+.|.+|..+++.++... . + .+.+++. .++| .+.|+ ++
T Consensus 397 ~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p 472 (960)
T 1wa5_C 397 TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHI 472 (960)
T ss_dssp HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCc
Confidence 3344444444555 789999999999999987532 1 1 2222222 2334 34566 89
Q ss_pred HHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-----------CCchhhhchHH
Q 009182 88 NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV-----------PDIDMLGFLPD 155 (541)
Q Consensus 88 ~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~-----------~~~~l~~~lp~ 155 (541)
-||..| ..+.+....+ . ...+..++|.+...+.++++.||..++.++..+... .+..+.+|++.
T Consensus 473 ~vr~~a~~~lg~~~~~~-~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 548 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRNQL-T---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEI 548 (960)
T ss_dssp HHHHHHHHHHHHTGGGS-C---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHH
T ss_pred eehHHHHHHHHHHHhhC-C---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHH
Confidence 999999 8888887754 2 234888899999999999999999999999998764 23558899999
Q ss_pred HHHHHHHHcCCCC---H--HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhc----CC-CCHHHHHHHHHHHHHHHh
Q 009182 156 FLDGLFNMLSDSS---H--EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA----AS-PDEFTRLTAITWINEFVK 225 (541)
Q Consensus 156 ~L~~L~~lL~D~~---~--eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~----~~-~~~~vr~~al~wL~~l~~ 225 (541)
+++.|++++.... + .....+.+++..++...+....++.+.+++.+.... ++ .++..+..+++-++.++.
T Consensus 549 ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~ 628 (960)
T 1wa5_C 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILN 628 (960)
T ss_dssp HHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9999999997752 1 134567788888888887666677777777665543 33 356777677888887777
Q ss_pred h-cCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHH--HhcCCCCHHHHHHHHHH
Q 009182 226 L-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIAT--RQLSSEWEATRIEALHW 302 (541)
Q Consensus 226 ~-~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~--~~L~~~~~~~R~aal~w 302 (541)
. +++...++.+.++|.+...+.....+..+.+.+....+.+... +..-.+.++++.+. ..+....+ -......
T Consensus 629 ~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~ 704 (960)
T 1wa5_C 629 YTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA--TIPESIKPLAQPLLAPNVWELKGN--IPAVTRL 704 (960)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS--SCCTTTGGGHHHHTSGGGGCCTTT--HHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHcCHHHhcCCCC--chhHHHH
Confidence 6 4456778899999999988876655666666777776665541 11223566677666 55544331 1234455
Q ss_pred HHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc------chhhHHHHHHHHHHhcccc
Q 009182 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVD 368 (541)
Q Consensus 303 L~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~------~~~~f~~~m~~LL~~~~~~ 368 (541)
+..+....++.+.+ ++.++..+-+.+.++.++ ..++++++.|+. -.+|+..+++.+++.+...
T Consensus 705 L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 705 LKSFIKTDSSIFPD-LVPVLGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp HHHHHHHHGGGCSC-SHHHHHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred HHHHHHhChHHHHH-HHHHHHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 55555545544433 344555555556665432 566777766662 3467777777777776544
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.28 E-value=2.7e-11 Score=117.02 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=173.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC-
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD- 193 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l-p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~- 193 (541)
+|.|.+.+++.++.+|..++..+..+....+....... ...++.|.+++.++++++|..+..+|..+...-... ...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA-IKAI 82 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH-HHHH
Confidence 88999999999999999999999999876652221111 256788888999999999999999988886310000 000
Q ss_pred -hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC
Q 009182 194 -YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (541)
Q Consensus 194 -~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p-~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~ 271 (541)
-...++.++..++++++.+|..|+..+..++...+..... .-...+|.+++.+.++++++|..|..+.+.+.. ..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~---~~ 159 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS---GP 159 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CC
Confidence 1357899999999999999999999998887532211110 123678999999999999999888887776632 11
Q ss_pred CCC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009182 272 ADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (541)
Q Consensus 272 ~~~---~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~-l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i 347 (541)
... .--...++.|.+.+.+++..+|..|+..+..+....++..... -.+.+|.+++.+.+++++++..++++|+.+
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 000 0013588999999999999999999999999998766554332 246889999999999999999999999999
Q ss_pred hc
Q 009182 348 AK 349 (541)
Q Consensus 348 ~~ 349 (541)
+.
T Consensus 240 ~~ 241 (252)
T 4hxt_A 240 KS 241 (252)
T ss_dssp HH
T ss_pred Hc
Confidence 93
No 58
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.27 E-value=8.5e-11 Score=114.06 Aligned_cols=233 Identities=18% Similarity=0.123 Sum_probs=166.2
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccch
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~-~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~ 109 (541)
...+.+...++++|+.+|..|+.++.++............ ..++|.|.+++.+++++||..| .+|..++.+-......
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3467888899999999999999999776643211111111 2578999999999999999999 7777765411110011
Q ss_pred hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 009182 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 110 ~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
..-...+|.|.+.+.++++.+|..++..++.+....+.. -...-...++.|.+++.+++++||..|+.+|..+...-..
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 111236999999999999999999999999998766543 1122235678888899999999999999999888631100
Q ss_pred CCC-CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch-hhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 189 SPS-VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 189 ~~~-~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l-~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
... ..-...+|.++..++++++.+|..|+..+..++...+....... ...+|.+...+.+.++++|..|..+...+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 000 00145788999999999999999999999988743322221112 35889999999999999998887776543
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.22 E-value=2.2e-10 Score=111.12 Aligned_cols=233 Identities=16% Similarity=0.094 Sum_probs=149.9
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhc
Q 009182 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (541)
Q Consensus 74 i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~ 152 (541)
-|+.+.+.+.++++++|..| ..|.+++..-........-...+|.|.+.++++++.+|..++..++.+....+..-...
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 36777778888888888888 77766544211000112223569999999999999999999999999986433221111
Q ss_pred h-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc
Q 009182 153 L-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (541)
Q Consensus 153 l-p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l 231 (541)
. ...++.|.+++.++++++|..|+.+|..+...- ..+.. .+.
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------------------------~~~~~------~~~------- 135 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG------------------------NEQIQ------AVI------- 135 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC------------------------HHHHH------HHH-------
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC------------------------chHHH------HHH-------
Confidence 1 246788888999999999999999988874210 00000 000
Q ss_pred ccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 009182 232 VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (541)
Q Consensus 232 ~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~---~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~ 308 (541)
-...+|.+++.+.++++++|..|..+.+.+. ...... .--..+++.|.+.+.+++..+|..|+..|+.+..
T Consensus 136 ---~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 136 ---DAGALPALVQLLSSPNEQILQEALWALSNIA---SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp ---HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT---TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred ---HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH---cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 0123344444444444455544444443332 100000 0002467778888877788888888888888887
Q ss_pred hChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 309 RHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 309 ~~~~~i~~~l-~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
..++...... .+.+|.+++.+.+++++++..++++|+.+++
T Consensus 210 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 6665543333 3588999999999999999999999998763
No 60
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.21 E-value=5.2e-08 Score=113.23 Aligned_cols=349 Identities=14% Similarity=0.121 Sum_probs=221.7
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh----------------chhhhhHHHHHHHHHHHhhcC-CCHHHHHH
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV----------------RGDFIIFFNQIFDALCKLSAD-SDANVQSA 92 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~----------------~~~~~~~~~~i~~~L~kl~~D-~d~~VR~~ 92 (541)
-+.+++.+...++.. ...+..+...+..+.+.. +..+...++.+++.+.+.+++ .++++...
T Consensus 136 Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~ 214 (1023)
T 4hat_C 136 WPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVA 214 (1023)
T ss_dssp CTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 356777788877643 344554444454444331 112235567777777777643 35566666
Q ss_pred H-HHHHHHHhHhhcccchhcHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCC--Cc--hh----hhchHHHHHHH--
Q 009182 93 A-HLLDRLVKDIVTESDQFSIEEFIPLLR-ERMNVLNPYVRQFLVGWITVLDSVP--DI--DM----LGFLPDFLDGL-- 160 (541)
Q Consensus 93 A-~~L~~l~kdi~~e~~~~~l~~~iP~L~-e~l~d~~~~vR~~a~~~l~~L~~~~--~~--~l----~~~lp~~L~~L-- 160 (541)
+ +.+.+.+..+.-+ ...-+.+++.+. ..+. ++..|..+++++..+.+.. +. .. ...++.++..+
T Consensus 215 ~L~~l~s~l~WI~i~--~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~ 290 (1023)
T 4hat_C 215 TLESLLRYLHWIPYR--YIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIAT 290 (1023)
T ss_dssp HHHHHHHHTTTSCTH--HHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHH--HhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 6 6666665533211 111135688888 7764 6899999999999887631 22 12 22333333322
Q ss_pred ------------HHHcCCCCHHHHHHHHHHHHHHHHHhcCCC--CCChHHHH----HHHHHhcCCCCHHHHHHHH-HHHH
Q 009182 161 ------------FNMLSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMA----EILVQRAASPDEFTRLTAI-TWIN 221 (541)
Q Consensus 161 ------------~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~--~~~~~~ii----~~Ll~~~~~~~~~vr~~al-~wL~ 221 (541)
+....+.+.+..+.-+..+..+.+...... .+++.+++ .+++.+...+|.++-..++ +|-.
T Consensus 291 ~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~ 370 (1023)
T 4hat_C 291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN 370 (1023)
T ss_dssp HTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 111122345555555566665555433211 13434444 4888888888999966666 5644
Q ss_pred HHHh-hc-----CcCcccchhhHHHHHhhhcCCCC------h-------------hHHHH---HHHHHHHHHHhhcCCCC
Q 009182 222 EFVK-LG-----GDQLVPYYADILGAILPCISDKE------E-------------KIRVV---ARETNEELRAIKADPAD 273 (541)
Q Consensus 222 ~l~~-~~-----~~~l~p~l~~llp~ll~~l~d~~------~-------------~iR~~---A~~~~~~L~~~i~~~~~ 273 (541)
+.+ .. ...+.|++.+++++++..|.+++ + +-++. .+++...+..+.+.+
T Consensus 371 -L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~-- 447 (1023)
T 4hat_C 371 -LVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID-- 447 (1023)
T ss_dssp -HHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHH--
T ss_pred -HHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHH--
Confidence 433 32 23467889999999999999854 1 11111 112332222221110
Q ss_pred CCChHhHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhChHH-HhhhhHHHHHHHHHhcC-----CCCHHHHHHHHHHHH
Q 009182 274 GFDVGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALS-----DPSDEVVLLVLEVHA 345 (541)
Q Consensus 274 ~~~l~~il~~L~~~L~~--~~~~~R~aal~wL~~L~~~~~~~-i~~~l~~l~p~Ll~~L~-----D~~~~V~~~~~~~L~ 345 (541)
-++.+++.+.+.+.+ .+|..|++++-++|.++++..++ ..+++++++|.|+..+. |+...|+..++|+++
T Consensus 448 --~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG 525 (1023)
T 4hat_C 448 --TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG 525 (1023)
T ss_dssp --HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence 023455666666653 68999999999999999987654 67899999999999886 466778889999999
Q ss_pred HHh----cchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCC
Q 009182 346 CIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (541)
Q Consensus 346 ~i~----~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~ 388 (541)
+|+ .+.++|++++..|++.+.++++.+++.+..-+++||..-+
T Consensus 526 ry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 526 QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp TCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 998 4788999999999999987777778888899999998644
No 61
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.18 E-value=2.6e-09 Score=113.84 Aligned_cols=309 Identities=14% Similarity=0.102 Sum_probs=195.7
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch---hhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG---DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~---~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~ 108 (541)
-+|.++..++.+++.+|..|+.++.+++..-.+ .+. -...+|.|.+++.+++++++..| .+|..+..+-.....
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY--QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHH--HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 368888999999999999999999998742211 222 13568999999999999999888 788776542000000
Q ss_pred hhcHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHc--------CCC--------CHHH
Q 009182 109 QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML--------SDS--------SHEI 171 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL--------~D~--------~~eV 171 (541)
...-.--+|.|.+.+. +.++.++..++..+.+++....... ......++.|.+++ .++ +.++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 0001233999999998 7899999999999999998743221 11226778888888 222 3556
Q ss_pred HHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHhh-----------------
Q 009182 172 RQQADSALWEFLQEIKNSPS--VDYGRMAEILVQRAAS------PDEFTRLTAITWINEFVKL----------------- 226 (541)
Q Consensus 172 R~~a~~~L~~ll~~i~~~~~--~~~~~ii~~Ll~~~~~------~~~~vr~~al~wL~~l~~~----------------- 226 (541)
++.|..+|..+... ..... .+.+..+|.|+..+++ .+..++..|+..+..+...
T Consensus 160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 66888888877642 10000 0112455655554432 3334444444434433200
Q ss_pred -----------------------------------cCcCcccchhhHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhcC
Q 009182 227 -----------------------------------GGDQLVPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 227 -----------------------------------~~~~l~p~l~~llp~ll~~l~d~-~~~iR~~A~~~~~~L~~~i~~ 270 (541)
.+...+ +-+..++.++..|..+ ++++++.|..+...+ ...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl---~~~ 314 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL-YHSDAIRTYLNLMGKSKKDATLEACAGALQNL---TAS 314 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---TTC
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHH-hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHh---ccC
Confidence 000011 2356677777777664 578888776666555 221
Q ss_pred CCCC--------CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC------HHH
Q 009182 271 PADG--------FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS------DEV 336 (541)
Q Consensus 271 ~~~~--------~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~------~~V 336 (541)
++.. +.-...+|.|.+.+.+++..+|..|...+..+... ++.-.-.-...+|.|++.|..++ +++
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v 393 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDI 393 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHH
Confidence 1100 00124678999999999999999999888888764 32222223568899999999763 478
Q ss_pred HHHHHHHHHHHhcc
Q 009182 337 VLLVLEVHACIAKD 350 (541)
Q Consensus 337 ~~~~~~~L~~i~~~ 350 (541)
...++++++.+..+
T Consensus 394 ~~~~l~~l~ni~~~ 407 (457)
T 1xm9_A 394 LSSACYTVRNLMAS 407 (457)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 88999999998743
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.16 E-value=5e-08 Score=106.12 Aligned_cols=327 Identities=14% Similarity=0.111 Sum_probs=216.0
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHh--
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK-- 101 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~---~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~k-- 101 (541)
.+-+.-+|+++..|..++..++..|+.++.+++... +..+.. ...+|.|.+++.+++++|+..| .+|..+..
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~--~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK--LKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 345567899999999999999999999999988522 112221 2467999999999999999999 88877653
Q ss_pred -----HhhcccchhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHc-----------
Q 009182 102 -----DIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML----------- 164 (541)
Q Consensus 102 -----di~~e~~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL----------- 164 (541)
..+.+. --||.|.+.++. .++.++..+..++..++....... .....-++.|.+++
T Consensus 122 ~~~nk~~I~~~------GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~-~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 122 DQDNKIAIKNC------DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM-EIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp CHHHHHHHHHT------THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH-HHHHHTHHHHHHHTHHHHHCCC---
T ss_pred CHHHHHHHHHc------CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH-HHHhccHHHHHHHHhcccccccccc
Confidence 112222 238999999986 678999999999999987543221 11234456666554
Q ss_pred ------CC-CCHHHHHHHHHHHHHHHHHhcC--CCCCChHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhhc--
Q 009182 165 ------SD-SSHEIRQQADSALWEFLQEIKN--SPSVDYGRMAEILVQRA------ASPDEFTRLTAITWINEFVKLG-- 227 (541)
Q Consensus 165 ------~D-~~~eVR~~a~~~L~~ll~~i~~--~~~~~~~~ii~~Ll~~~------~~~~~~vr~~al~wL~~l~~~~-- 227 (541)
.| .+.+|+..|..+|..+...-.. ..-...+.+++.|+..+ .+.+...+..|+..|..+..-.
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~ 274 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHR 274 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccc
Confidence 12 2579999999998888521000 00001123344444433 2345567777777776654221
Q ss_pred --C--------------------cCccc--chhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhcCCC-------CCC
Q 009182 228 --G--------------------DQLVP--YYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPA-------DGF 275 (541)
Q Consensus 228 --~--------------------~~l~p--~l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i~~~~-------~~~ 275 (541)
+ ..-.+ +-+..++.++..+.+ +.+++++.|..+...+.. ... ..+
T Consensus 275 e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~a---g~~~~~~~~~~~v 351 (584)
T 3l6x_A 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCA---GRWTYGRYIRSAL 351 (584)
T ss_dssp HSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHS---SCSHHHHHHHHHH
T ss_pred cccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHc---CCccccHHHHHHH
Confidence 0 00011 235778888888865 468899888887776631 110 001
Q ss_pred ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHH
Q 009182 276 DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP--------SDEVVLLVLEVHACI 347 (541)
Q Consensus 276 ~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~--------~~~V~~~~~~~L~~i 347 (541)
.-...+|.|.+.+.+++..++.+|...|..+.......- ..-...+|.|+..|.++ +++++..+|++|+.|
T Consensus 352 ~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 352 RQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp TSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 224679999999999999999999999999988654321 23467899999999976 478899999999999
Q ss_pred hcc-hhhHH-----HHHHHHHHhccc
Q 009182 348 AKD-LQHFR-----QLVVFLVHNFRV 367 (541)
Q Consensus 348 ~~~-~~~f~-----~~m~~LL~~~~~ 367 (541)
..+ +..-. ..++.|.+++++
T Consensus 431 ~a~~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 431 IAENLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHCCChHHHHHHHhC
Confidence 732 22211 256667776655
No 63
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.15 E-value=3.8e-10 Score=106.37 Aligned_cols=195 Identities=16% Similarity=0.098 Sum_probs=139.1
Q ss_pred hcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 30 l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~-~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
-+...+++...++++|+.+|..|+.+|.+++........... ...+|.|.+++.++++.||..| .+|.+++.+-....
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 344568888999999999999999999999843211111111 2578999999999999999999 88877653110000
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhc-hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~-lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i 186 (541)
....-...+|.|.+.+.+.++.+|..++..++++....+...... -...++.|.+++.++++++|..|+.+|..+...-
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 011112359999999999999999999999999986544322111 2356888888999999999999999999887421
Q ss_pred cCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009182 187 KNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFV 224 (541)
Q Consensus 187 ~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~ 224 (541)
.... ...-...++.+++.++++++.+|..|+..+..++
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 0000 0001357899999999999999999998887764
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.12 E-value=1e-08 Score=116.96 Aligned_cols=254 Identities=10% Similarity=0.157 Sum_probs=179.1
Q ss_pred CHHHHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc--hhhhchHHHHHHHHHH
Q 009182 86 DANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNM 163 (541)
Q Consensus 86 d~~VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~--~l~~~lp~~L~~L~~l 163 (541)
..+.+.+|..+..++..-.... ... ..++..+.+.+.+.+.. ..++..+..++...+. ..-+|+=.+++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEH-DVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSS-SCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccc-ccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 4456777777766655222111 112 36788888888886544 8999999999865432 4567776778888889
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHH
Q 009182 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (541)
Q Consensus 164 L~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~l 242 (541)
..|-...||++|..+...+...+. ......++|.++..+.+. .|..+..|+..++.+++..+..+...+|.++|.+
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence 999999999999999999998774 123688999999888655 6999999999999999988888888999999999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhhcCCC---------------C----------------CCC---hHhHHHHHHHhc
Q 009182 243 LPCISDKEEKIRVVARETNEELRAIKADPA---------------D----------------GFD---VGPILSIATRQL 288 (541)
Q Consensus 243 l~~l~d~~~~iR~~A~~~~~~L~~~i~~~~---------------~----------------~~~---l~~il~~L~~~L 288 (541)
..+|.|..++|+.+|.++...++..+.+.+ + .++ +.-++|.|.+.|
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l 260 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGL 260 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhh
Confidence 999999999999999999999887776531 0 011 233455666666
Q ss_pred CCCCHHHHHHHHHHHHHHHhh--ChHHHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 009182 289 SSEWEATRIEALHWISTLLNR--HRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHAC 346 (541)
Q Consensus 289 ~~~~~~~R~aal~wL~~L~~~--~~~~i~~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~ 346 (541)
....-.++..+.-.+..+... .|.+..||++.++|.+-+...-- .||+|..+-+++..
T Consensus 261 ~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 261 NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKT 321 (986)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred ccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence 554444444444444444444 35566666666666665554432 45666544443333
No 65
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.05 E-value=1.4e-08 Score=107.80 Aligned_cols=310 Identities=13% Similarity=0.097 Sum_probs=199.5
Q ss_pred chhHHHHhhcCCCC------------HHHHHHHHHHHHHHHHHhchh--------hhhHHHH---HHHHHHHhhcCCC--
Q 009182 32 QIVPPVLNSFSDQD------------SRVRYYACEALYNIAKVVRGD--------FIIFFNQ---IFDALCKLSADSD-- 86 (541)
Q Consensus 32 ~ii~~vl~~l~D~d------------~~VR~~A~eaL~~i~k~~~~~--------~~~~~~~---i~~~L~kl~~D~d-- 86 (541)
..+|.+++.+.+.+ +.+|..|+.+|.||+..-.+. +++.++. --+.+.+++..+.
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 36678888887543 699999999999999654221 1111111 1133344443331
Q ss_pred HH-----HHH--------HHHHHHHHH-----hHhhcccchhcHhhhHHHHHHHhc-----------CCCHHHHHHHHHH
Q 009182 87 AN-----VQS--------AAHLLDRLV-----KDIVTESDQFSIEEFIPLLRERMN-----------VLNPYVRQFLVGW 137 (541)
Q Consensus 87 ~~-----VR~--------~A~~L~~l~-----kdi~~e~~~~~l~~~iP~L~e~l~-----------d~~~~vR~~a~~~ 137 (541)
.+ |++ ++.+|.++. ++.+.+.+ .+|.|...+. +.++.++..++..
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G------~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a 223 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG------GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT------HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC------CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence 11 443 336665442 33333333 2566666652 1457889999999
Q ss_pred HHHhhcCCCch--hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC--CCh--HHHHHHHHHh-cCCCCH
Q 009182 138 ITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS--VDY--GRMAEILVQR-AASPDE 210 (541)
Q Consensus 138 l~~L~~~~~~~--l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~--~~~--~~ii~~Ll~~-~~~~~~ 210 (541)
+.+++...+.. .+.-....++.|.++|..++++++..|+.+|..+.. +.... ..+ ...+|.|++. .+++++
T Consensus 224 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~--~~~~~~k~~I~~~GaI~~LV~lLl~s~~~ 301 (458)
T 3nmz_A 224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW--RADVNSKKTLREVGSVKALMECALEVKKE 301 (458)
T ss_dssp HHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTS--SCCHHHHHHHHHTTHHHHHHHHHTTCCSH
T ss_pred HHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhc--CCCHHHHHHHHHcCCHHHHHHHHhcCCCH
Confidence 99998654321 222245668888889999999999999999887742 10000 001 2467888886 456688
Q ss_pred HHHHHHHHHHHHHHhhcCcCcccc--hhhHHHHHhhhcCCCCh----hHHHHHHHHHHHHHHhhcCCCCC---CChHhHH
Q 009182 211 FTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEE----KIRVVARETNEELRAIKADPADG---FDVGPIL 281 (541)
Q Consensus 211 ~vr~~al~wL~~l~~~~~~~l~p~--l~~llp~ll~~l~d~~~----~iR~~A~~~~~~L~~~i~~~~~~---~~l~~il 281 (541)
.++..|+..+..++...++.-... -...+|.+...+.+..+ ++++.|..+...+...+..+.+. +--...+
T Consensus 302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i 381 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 381 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccH
Confidence 899888888877776332211111 25678888888877543 47776666665554321111110 0012468
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 282 SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 282 ~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l-~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
+.|.+.+.+.+..++..|...|..+....++...... .+.+|.|++.|..+++.++..++++|..++.
T Consensus 382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 382 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999877666543322 4679999999999999999999999999984
No 66
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.03 E-value=1.6e-07 Score=108.84 Aligned_cols=334 Identities=13% Similarity=0.084 Sum_probs=221.1
Q ss_pred hhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc---------hhhhhHHHHHHHHHHHhhcCCC-----H------
Q 009182 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---------GDFIIFFNQIFDALCKLSADSD-----A------ 87 (541)
Q Consensus 28 ~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~---------~~~~~~~~~i~~~L~kl~~D~d-----~------ 87 (541)
..+..+++.++.|+++++..|-..+.+-++......+ ....+++..+++++.+-+.-|+ .
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed 407 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE 407 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH
Confidence 6788899999999999999998888777766554322 2234677888888876443211 0
Q ss_pred -----HHHHHHHHHHHHHhHhhccc-chhcHh----hhHHHHHHHhc---CCCHHHHHHHHHHHHHhhcCCCch------
Q 009182 88 -----NVQSAAHLLDRLVKDIVTES-DQFSIE----EFIPLLRERMN---VLNPYVRQFLVGWITVLDSVPDID------ 148 (541)
Q Consensus 88 -----~VR~~A~~L~~l~kdi~~e~-~~~~l~----~~iP~L~e~l~---d~~~~vR~~a~~~l~~L~~~~~~~------ 148 (541)
+.|+.. . .++|...-- ++..++ .+.+.+.+.+. ..+++.++.++-.++.++......
T Consensus 408 ~~~F~e~Rk~l---~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~ 483 (980)
T 3ibv_A 408 EAEFQEMRKKL---K-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNE 483 (980)
T ss_dssp HHHHHHHHHHH---H-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCS
T ss_pred HHHHHHHHHHH---H-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCc
Confidence 222222 2 223332211 122334 55566666652 356899999999999998765432
Q ss_pred hhhchHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH--hcCCCCHHHHHHHHHHHH
Q 009182 149 MLGFLPDFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ--RAASPDEFTRLTAITWIN 221 (541)
Q Consensus 149 l~~~lp~~L~~L~~lL~-----D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~--~~~~~~~~vr~~al~wL~ 221 (541)
...++|.+++-+.+++. ++++-||..++..+++..+-+...+ .+++++++.++. .+.+++..||..|...+.
T Consensus 484 ~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~ 562 (980)
T 3ibv_A 484 VDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAIPALIEYFVGPRGIHNTNERVRPRAWYLFY 562 (980)
T ss_dssp SSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHhccccccCCChhHHHHHHHHHH
Confidence 23578888887777765 8899999999999999988776543 458999999999 888999999999999999
Q ss_pred HHHhhcCcCcccchhhHHHHHhhhcCCC-Ch----h-----HHH-----------HHHHHHHHHHHhhcCCCCC--CChH
Q 009182 222 EFVKLGGDQLVPYYADILGAILPCISDK-EE----K-----IRV-----------VARETNEELRAIKADPADG--FDVG 278 (541)
Q Consensus 222 ~l~~~~~~~l~p~l~~llp~ll~~l~d~-~~----~-----iR~-----------~A~~~~~~L~~~i~~~~~~--~~l~ 278 (541)
.|++.++..+.||++.++..+.+.+.-. .+ + +++ --.++.|.+......+.+. -.++
T Consensus 563 ~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~ 642 (980)
T 3ibv_A 563 RFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD 642 (980)
T ss_dssp HHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999998887731 11 0 011 1233444443332211100 0123
Q ss_pred hHHHH----HHHhcCCC----CHHHHH-HHHHHHHHHHhhChHH------HhhhhHHHHHHHHHhcC--CCCHHHHHHHH
Q 009182 279 PILSI----ATRQLSSE----WEATRI-EALHWISTLLNRHRTE------VLHFLNDIFDTLLKALS--DPSDEVVLLVL 341 (541)
Q Consensus 279 ~il~~----L~~~L~~~----~~~~R~-aal~wL~~L~~~~~~~------i~~~l~~l~p~Ll~~L~--D~~~~V~~~~~ 341 (541)
.+++- +...+... +...+. ..+.|++.++++.++. ....+.+..+.++.+|+ ..+..||..++
T Consensus 643 ~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~ 722 (980)
T 3ibv_A 643 SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVR 722 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 33333 33333211 211222 5678899999887432 55567788888888877 56789999999
Q ss_pred HHHHHHhc-----chhhHHHHHHHHHHhcc
Q 009182 342 EVHACIAK-----DLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 342 ~~L~~i~~-----~~~~f~~~m~~LL~~~~ 366 (541)
.++.++.. -.+++.+++..++..+.
T Consensus 723 ~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~ 752 (980)
T 3ibv_A 723 FTSGRIINVVGPDMLPKVPQLISILLNSID 752 (980)
T ss_dssp HHHHHHTTTTHHHHTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccHhHHHHHHHHHHHHHhcCC
Confidence 99999883 23556666666664443
No 67
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.98 E-value=1.4e-08 Score=95.58 Aligned_cols=192 Identities=19% Similarity=0.114 Sum_probs=137.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~ 151 (541)
...+.|.+++.+++++||..| .+|..+...-........-...+|.|.+.++++++.+|..++..++.+....+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 457788899999999999988 8887776311110011112356999999999999999999999999997544322111
Q ss_pred c-hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 009182 152 F-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (541)
Q Consensus 152 ~-lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~-~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~ 229 (541)
. =...++.|.+++.++++++|..|+.+|..+...-.... ..--...+|.+++.++++++.+|..|+..+..++...+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 1 12467778889999999999999999998863110000 000145789999999999999999999999988764332
Q ss_pred Cccc-chhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 230 QLVP-YYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 230 ~l~p-~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
.... .-...+|.+.+.+.++++++|+.|..+.+.+
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2111 1236789999999999999999998887765
No 68
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.98 E-value=2.1e-07 Score=110.36 Aligned_cols=355 Identities=12% Similarity=0.111 Sum_probs=216.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc---------------
Q 009182 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES--------------- 107 (541)
Q Consensus 44 ~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~--------------- 107 (541)
+++.||..+|.++..|++.--+ ..|+++++.+.++++. +++.+.++ ..|..+++++..-.
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 5799999999999999876422 3577888888777654 34555555 65655555432100
Q ss_pred -------------------------------------------------------c-hhcH---hhhHHHHHHHhcCCCH
Q 009182 108 -------------------------------------------------------D-QFSI---EEFIPLLRERMNVLNP 128 (541)
Q Consensus 108 -------------------------------------------------------~-~~~l---~~~iP~L~e~l~d~~~ 128 (541)
+ .... ..+++.+...+. ++
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~ 261 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN--EQ 261 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcC--CH
Confidence 0 0000 124555554443 57
Q ss_pred HHHHHHHHHHHHhhcCCC--ch---hhhch-HHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHhcC------
Q 009182 129 YVRQFLVGWITVLDSVPD--ID---MLGFL-PDFLDGLFNML--------SDSSHEIRQQADSALWEFLQEIKN------ 188 (541)
Q Consensus 129 ~vR~~a~~~l~~L~~~~~--~~---l~~~l-p~~L~~L~~lL--------~D~~~eVR~~a~~~L~~ll~~i~~------ 188 (541)
.+|..+++++..+.+... .+ ++..+ +..+..+++.+ .|.+.++++..++.+..+...+..
T Consensus 262 ~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~ 341 (1204)
T 3a6p_A 262 ELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADS 341 (1204)
T ss_dssp TTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 889999999999887642 32 33333 44566777665 223456676666666665533321
Q ss_pred --CCCCChHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHhh---cCcCcccchhhHHHHH---hhhcCCCChh-------
Q 009182 189 --SPSVDYGRMAEILVQRAASPDEFTRLTAI-TWINEFVKL---GGDQLVPYYADILGAI---LPCISDKEEK------- 252 (541)
Q Consensus 189 --~~~~~~~~ii~~Ll~~~~~~~~~vr~~al-~wL~~l~~~---~~~~l~p~l~~llp~l---l~~l~d~~~~------- 252 (541)
....++..+++.++..+++++..+...++ +|..-+-.. ....+.++++++++++ +..+.+++.+
T Consensus 342 ~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~ 421 (1204)
T 3a6p_A 342 DVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEY 421 (1204)
T ss_dssp SCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHH
T ss_pred cccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhh
Confidence 23456899999999999999999988877 676543222 1234678999999999 7777764311
Q ss_pred -------HHH------HHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC-------------------------CCCHH
Q 009182 253 -------IRV------VARETNEELRAIKADPADGFDVGPILSIATRQLS-------------------------SEWEA 294 (541)
Q Consensus 253 -------iR~------~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~-------------------------~~~~~ 294 (541)
..+ ..++..+.+.+.+.......-+..+.+.+...+. ++.|.
T Consensus 422 ~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 501 (1204)
T 3a6p_A 422 SRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFV 501 (1204)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHH
Confidence 001 0111122222222110000012223344433332 22355
Q ss_pred HHHHHHHHHHHHHhhChHHH-hhhhH-HHHHHHHHhc---CCCCHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHhc
Q 009182 295 TRIEALHWISTLLNRHRTEV-LHFLN-DIFDTLLKAL---SDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNF 365 (541)
Q Consensus 295 ~R~aal~wL~~L~~~~~~~i-~~~l~-~l~p~Ll~~L---~D~~~~V~~~~~~~L~~i~----~~~~~f~~~m~~LL~~~ 365 (541)
.+++....+.++.+++.... .++++ .++|.++..+ +..+|.++...+.++++++ .+++++.+++..++..+
T Consensus 502 ~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l 581 (1204)
T 3a6p_A 502 QWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSV 581 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhh
Confidence 67777777777777764433 23444 3455555543 4557889888888888877 46789999999999887
Q ss_pred cc------------cchhhhhhHHHHHHHhhccCCh------hhHHHHHHHHhcccC
Q 009182 366 RV------------DNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGEA 404 (541)
Q Consensus 366 ~~------------~~~ll~~r~~~iir~Lc~~l~~------e~i~~~l~~il~~~~ 404 (541)
.+ ..+-++.++..-++.||...+. +.++..+..++....
T Consensus 582 ~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~ 638 (1204)
T 3a6p_A 582 TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNEL 638 (1204)
T ss_dssp HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTT
T ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcc
Confidence 54 3456778888899999988754 677777777776443
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.98 E-value=4e-08 Score=104.56 Aligned_cols=272 Identities=11% Similarity=0.070 Sum_probs=167.8
Q ss_pred HHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhc-
Q 009182 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF- 152 (541)
Q Consensus 75 ~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~- 152 (541)
+|.+.+++..++++++..| .+|.+++..-........-...+|.|.+.+++.++.++..++..+.+++...+..-...
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5667777878888888888 77777653110000012224459999999999999999999999999987522211111
Q ss_pred hHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhc--------CC--------CCHHHHH
Q 009182 153 LPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRA--------AS--------PDEFTRL 214 (541)
Q Consensus 153 lp~~L~~L~~lL~-D~~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~--------~~--------~~~~vr~ 214 (541)
=-..++.|.++|. +++++++..+..+|..+... . ..... .+..+|.++..+ ++ .++.++.
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 1234667777998 77899999999999888742 1 10000 236788888877 22 2456666
Q ss_pred HHHHHHHHHHhhcCcCcccc-h--hhHHHHHhhhcCC------CChhHHHHHHHHHHHHH--------------------
Q 009182 215 TAITWINEFVKLGGDQLVPY-Y--ADILGAILPCISD------KEEKIRVVARETNEELR-------------------- 265 (541)
Q Consensus 215 ~al~wL~~l~~~~~~~l~p~-l--~~llp~ll~~l~d------~~~~iR~~A~~~~~~L~-------------------- 265 (541)
.|...+..++.. ++ .... . +..+|.++..+.+ .+..+++.|..+...+.
T Consensus 162 ~a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 162 NATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 888888877653 21 1111 1 2455555555542 22233333322222110
Q ss_pred --------HhhcC-------------------CCCCC---ChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhChH--
Q 009182 266 --------AIKAD-------------------PADGF---DVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRT-- 312 (541)
Q Consensus 266 --------~~i~~-------------------~~~~~---~l~~il~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~-- 312 (541)
..+.. ..... --..+++.+...+. +++..++++|.-.|..+..+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 00000 00000 01356777777774 44678899999999988875432
Q ss_pred -HH-hhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 009182 313 -EV-LHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (541)
Q Consensus 313 -~i-~~~l--~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~ 350 (541)
.+ .... ...+|.|++.|.+++++|+..++|+|+.++.+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 22 1112 46789999999999999999999999999954
No 70
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.97 E-value=4.8e-06 Score=97.53 Aligned_cols=295 Identities=10% Similarity=0.033 Sum_probs=191.1
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh------chhhhhHHHHHHHHHHHhhcCC---------------
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV------RGDFIIFFNQIFDALCKLSADS--------------- 85 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~------~~~~~~~~~~i~~~L~kl~~D~--------------- 85 (541)
.+++..+++.++.+.+++|..|+..|.+-...+++.. .....+++..+++.+...+.-|
T Consensus 339 ~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r 418 (1049)
T 3m1i_C 339 RELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR 418 (1049)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchH
Confidence 4566777888888888889999999998888877622 2334477788888877644211
Q ss_pred ----CH---HHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCCCchh-hhchH
Q 009182 86 ----DA---NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN--VLNPYVRQFLVGWITVLDSVPDIDM-LGFLP 154 (541)
Q Consensus 86 ----d~---~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~--d~~~~vR~~a~~~l~~L~~~~~~~l-~~~lp 154 (541)
|. +.|+++ ..|+.++. +. +...++.+.+.+.+.+. ..+++.|..++-+++.++...+... -.++|
T Consensus 419 ~~~~d~d~~~~~~~~~~~L~~l~~-~~---~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~ 494 (1049)
T 3m1i_C 419 EFVKESDTIQLYKSEREVLVYLTH-LN---VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV 494 (1049)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHH-HC---HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHHc-cC---HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH
Confidence 11 235455 66666553 11 22345666777777775 3689999999999998876655442 24578
Q ss_pred HHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 009182 155 DFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (541)
Q Consensus 155 ~~L~~L~~lL~-----D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~ 229 (541)
.+++.+..+.. |+.+-||..++.+++++.+-+...+ ..+..+++.++..+.++++.||..|+..+..+++.++.
T Consensus 495 ~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 495 TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88777776432 4556677668888898876655321 24789999999999999999999999999999887776
Q ss_pred Ccc--------cchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC-CCChHhHHHHHHHhcC--------C--
Q 009182 230 QLV--------PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD-GFDVGPILSIATRQLS--------S-- 290 (541)
Q Consensus 230 ~l~--------p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~-~~~l~~il~~L~~~L~--------~-- 290 (541)
.+. ||++.++..+...+.+-+.+-+....++.+.+.....+... .-.++.+++.+.+.+. +
T Consensus 574 ~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 653 (1049)
T 3m1i_C 574 HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPT 653 (1049)
T ss_dssp HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGG
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 665 99999999999888775544444455555555433321000 0012333333322211 0
Q ss_pred --CCHHH-H--HHHHHHHHHHHhhChHHHhhhhHHHHHHHH
Q 009182 291 --EWEAT-R--IEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (541)
Q Consensus 291 --~~~~~-R--~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll 326 (541)
.+.+. + ...+..+..++...++++.|+.+.+++-++
T Consensus 654 ~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 654 LLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1049)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 01221 1 123455666677777777777777666444
No 71
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.90 E-value=3.2e-07 Score=89.77 Aligned_cols=189 Identities=13% Similarity=0.145 Sum_probs=130.8
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
+-+.+...+-++|++-|..|++.+.........+.....+-+|+.+.--+.|+++.|-..+ +.|..++.-+....
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~---- 122 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE---- 122 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc----
Confidence 4466777888899999999999998876544444443333344433323458888877766 55554443222110
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhc-hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 009182 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (541)
Q Consensus 112 l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~-lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~ 190 (541)
..+..| ...++|.|..-++|+...||+.+.+.+..+....
T Consensus 123 -----------------------------------y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---- 163 (266)
T 2of3_A 123 -----------------------------------TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---- 163 (266)
T ss_dssp -----------------------------------CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----
T ss_pred -----------------------------------ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC----
Confidence 011111 2344555555677777778887777776555432
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHH---HHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 009182 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL---GAILPCISDKEEKIRVVARETNEELRAI 267 (541)
Q Consensus 191 ~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~ll---p~ll~~l~d~~~~iR~~A~~~~~~L~~~ 267 (541)
....+.+++.+.+++.++.+|.+++.|+..+.+..|.. | .+.+ |.+.++++|++.+||++|.++...+.+.
T Consensus 164 --~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 164 --GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp --CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 25668888888999999999999999999998877765 2 4567 9999999999999999999999988877
Q ss_pred hcC
Q 009182 268 KAD 270 (541)
Q Consensus 268 i~~ 270 (541)
+++
T Consensus 238 ~Gd 240 (266)
T 2of3_A 238 EGD 240 (266)
T ss_dssp HTT
T ss_pred hhH
Confidence 654
No 72
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.87 E-value=4.7e-06 Score=96.83 Aligned_cols=334 Identities=10% Similarity=0.029 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc-----c---------
Q 009182 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES-----D--------- 108 (541)
Q Consensus 44 ~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~-----~--------- 108 (541)
+++.+|.-.|.++..+++..-+ ..|++.++.+....+.++. .+..+ ..|..+.+++..-. .
T Consensus 124 ~~~~vinKLa~~La~I~k~~~P---~~Wp~fi~dLv~~~~~~~~-~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~ 199 (1073)
T 3gjx_A 124 KEKVYIGKLNMILVQILKQEWP---KHWPTFISDIVGASRTSES-LCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDS 199 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCh---hhccHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 4678888888888888876422 2467777777777654433 33334 66666666654210 0
Q ss_pred -hhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 109 -QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL-FNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 109 -~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L-~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
....+.+++.+.+.+.. .++.+...+++.++.+.+..+.+.+.. +.+++.+ ++.+. +++.|.+|+.||.+++..
T Consensus 200 L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~-~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 200 MCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE-TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc-chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence 01234556666666643 688888899999999999877654332 4567766 57774 567888888888877652
Q ss_pred -hcC--------------------------------CC---------------------------CCC----hHHHHHHH
Q 009182 186 -IKN--------------------------------SP---------------------------SVD----YGRMAEIL 201 (541)
Q Consensus 186 -i~~--------------------------------~~---------------------------~~~----~~~ii~~L 201 (541)
+.. .. .++ +...+.++
T Consensus 277 ~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~l 356 (1073)
T 3gjx_A 277 SVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYM 356 (1073)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 100 00 011 11233345
Q ss_pred HHhcCCCCHHHHHHHH-HHHHHHHhh---cC---------------------cCcccchhhHHHHHhhhcCCCCh-----
Q 009182 202 VQRAASPDEFTRLTAI-TWINEFVKL---GG---------------------DQLVPYYADILGAILPCISDKEE----- 251 (541)
Q Consensus 202 l~~~~~~~~~vr~~al-~wL~~l~~~---~~---------------------~~l~p~l~~llp~ll~~l~d~~~----- 251 (541)
+.+...+|.++-..++ +|-.-...+ .+ ..+.|++.++..+++..|.+++.
T Consensus 357 l~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e 436 (1073)
T 3gjx_A 357 LLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVE 436 (1073)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEE
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccC
Confidence 5666666777766665 453311111 10 01456777888888888886431
Q ss_pred ----h-------------HHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhChH
Q 009182 252 ----K-------------IRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRT 312 (541)
Q Consensus 252 ----~-------------iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~--~~~~~R~aal~wL~~L~~~~~~ 312 (541)
+ .++.-.+++..+..+... --+..+++.+.+++.+ .+|..+++++-++|+++....+
T Consensus 437 ~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~----~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~ 512 (1073)
T 3gjx_A 437 NDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYV----DTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHE 512 (1073)
T ss_dssp CSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCH
T ss_pred cccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCc
Confidence 0 111222222222111100 0023445666666543 5699999999999999865554
Q ss_pred H-HhhhhHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHhccccchhhhhhHHHHHHH
Q 009182 313 E-VLHFLNDIFDTLLKALSDP-----SDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR 382 (541)
Q Consensus 313 ~-i~~~l~~l~p~Ll~~L~D~-----~~~V~~~~~~~L~~i~----~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~ 382 (541)
+ =.++++++++.|+.....+ .+.++..+++++++++ .+.+||++++..+++.+.++.+.+++.|..-+.+
T Consensus 513 ~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~ 592 (1073)
T 3gjx_A 513 EDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIK 592 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 3478999999999887544 4567778999999988 5789999999999999988877788888888888
Q ss_pred hhccCC
Q 009182 383 LCVLLD 388 (541)
Q Consensus 383 Lc~~l~ 388 (541)
+|..-+
T Consensus 593 i~~~C~ 598 (1073)
T 3gjx_A 593 IAQKCR 598 (1073)
T ss_dssp HHHHTG
T ss_pred HHHHHH
Confidence 876643
No 73
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.8e-07 Score=92.62 Aligned_cols=187 Identities=10% Similarity=0.026 Sum_probs=142.7
Q ss_pred HHhhcCCCHHHHHHH-HHHHHHHhHhhccc----chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-----
Q 009182 79 CKLSADSDANVQSAA-HLLDRLVKDIVTES----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID----- 148 (541)
Q Consensus 79 ~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~----~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~----- 148 (541)
..-+.+.+-..|..| +.+.+.+.....+. .......+.+.+..++.|.|..|.+.++..+..+....+..
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 345788888999999 77776665322211 11124566888999999999999999999999887754432
Q ss_pred -hhhchHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 149 -MLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 149 -l~~~lp~~L~~L~-~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~ 226 (541)
...+.+.++++|+ +.++|+.+.+|..+..++..++... .....+++.+...+++.++.+|..++.|+..+..-
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-----~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-----TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-----SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 3456788888888 4699999999999988887776432 23567888899999999999999999999998876
Q ss_pred cCcCc---ccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 227 GGDQL---VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 227 ~~~~l---~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
.|... .+.++.+++.+.+++.|++++||++|.++.+.+++.++.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 55443 346677888888999999999999999999999887764
No 74
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.79 E-value=1.8e-06 Score=93.86 Aligned_cols=312 Identities=14% Similarity=0.096 Sum_probs=203.8
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHH----hchhhhhHHHHHHHHHHHhhcC-CCHHHHHHH-HHHHHHHhHhhc
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKV----VRGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~----~~~~~~~~~~~i~~~L~kl~~D-~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
..+|+++..|..++..||..|+.+|.|++.. .+..+... ..+|.|.+++.+ ++.++++.| .+|-.+.. ..
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~--GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~--~~ 165 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC--DGVPALVRLLRKARDMDLTEVITGTLWNLSS--HD 165 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT--THHHHHHHHHHHCCSHHHHHHHHHHHHHHTT--SG
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc--CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cc
Confidence 3679999999999999999999999999852 12233222 468888888875 677887777 67666543 11
Q ss_pred ccchhcHhhhHHHHHHHhc------------------CCCHHHHHHHHHHHHHhhcCCCc--hhhhchHHHHHHHHHHcC
Q 009182 106 ESDQFSIEEFIPLLRERMN------------------VLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLS 165 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~------------------d~~~~vR~~a~~~l~~L~~~~~~--~l~~~lp~~L~~L~~lL~ 165 (541)
+.....+..-+|.|.+.+. ..++.|+..+..+|.+++...+. ..+.-.+.+.+.|..++.
T Consensus 166 ~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~ 245 (584)
T 3l6x_A 166 SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245 (584)
T ss_dssp GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 1111122334677776551 24689999999999999876532 222222334444554443
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHh----cCC----------------CCC-Ch-----HHHHHHHHHhcC-CCCHHH
Q 009182 166 ------DSSHEIRQQADSALWEFLQEI----KNS----------------PSV-DY-----GRMAEILVQRAA-SPDEFT 212 (541)
Q Consensus 166 ------D~~~eVR~~a~~~L~~ll~~i----~~~----------------~~~-~~-----~~ii~~Ll~~~~-~~~~~v 212 (541)
+++....+.|..+|..+.... ... ..+ .+ ...++.++..++ ..++.+
T Consensus 246 ~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v 325 (584)
T 3l6x_A 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325 (584)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred HhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHH
Confidence 345556666656665544221 000 001 11 356777777774 457899
Q ss_pred HHHHHHHHHHHHhhcC---cCcccc--hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHh
Q 009182 213 RLTAITWINEFVKLGG---DQLVPY--YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (541)
Q Consensus 213 r~~al~wL~~l~~~~~---~~l~p~--l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~ 287 (541)
+..|...|..++.-.+ ..+... -...+|.+...+...+++++..|..+...+..-... ...+ -...+|.|.+.
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~~I-~~g~ip~LV~L 403 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN-KELI-GKHAIPNLVKN 403 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC-HHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH-HHHH-HhCCHHHHHHH
Confidence 9999988888764211 111111 135689999999988899998888887777432110 0001 14678999999
Q ss_pred cCCC--------CHHHHHHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhc
Q 009182 288 LSSE--------WEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDP--SDEVVLLVLEVHACIAK 349 (541)
Q Consensus 288 L~~~--------~~~~R~aal~wL~~L~~~~~~~i~~~-l~~l~p~Ll~~L~D~--~~~V~~~~~~~L~~i~~ 349 (541)
|.+. +..++.+|+..++.+..+.+...... -.+.+|.|...|.+. ++.++..++++|..+..
T Consensus 404 L~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred hcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 9764 46788899999998888877654432 346899999999986 88999999999999984
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.79 E-value=6.7e-07 Score=81.08 Aligned_cols=207 Identities=17% Similarity=0.184 Sum_probs=156.1
Q ss_pred hchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhcC
Q 009182 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--EFTRLTAITWINEFVKLGG 228 (541)
Q Consensus 151 ~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~--~~vr~~al~wL~~l~~~~~ 228 (541)
.|=-+|++.+...|.|.-=.||+.|...+....++.+. -+++++..++...+.++ +.. +..-..+|.++.+-|
T Consensus 28 ~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e----l~epl~~kL~vm~~ksEaIplt-qeIa~a~G~la~i~P 102 (253)
T 2db0_A 28 KYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED----LYEPMLKKLFSLLKKSEAIPLT-QEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHCH
T ss_pred HhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH----HHHHHHHHHHHHHhhcccCchH-HHHHHHHhHHHHhCH
Confidence 45568899999999999999999998877777654431 25777777776644333 222 233356777777766
Q ss_pred cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 009182 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (541)
Q Consensus 229 ~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~ 308 (541)
+. ...++|.++....-.++.+|---.-+++.+++.-.. -.+.++.-+...+.+.+...|.+|+.+++++++
T Consensus 103 e~----v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~-----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 103 EL----VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM-----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH----HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HH----HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 54 467888888887777888875545556655543100 135566777788889999999999999999999
Q ss_pred hChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhh
Q 009182 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (541)
Q Consensus 309 ~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r 375 (541)
+.+..+.|++|. +...|.|.+.-||..+.++|.+++...+-|.+++..-++.|.+...++...
T Consensus 174 n~~~yv~PfLpr----L~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 174 NSFKYVNPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKT 236 (253)
T ss_dssp TTHHHHGGGHHH----HHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred cCccccCcchHH----HHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999999988655 567889999999999999999999665669999999999999998877753
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.5e-07 Score=93.11 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=137.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHhch-----hhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc---
Q 009182 37 VLNSFSDQDSRVRYYACEALYNIAKVVRG-----DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES--- 107 (541)
Q Consensus 37 vl~~l~D~d~~VR~~A~eaL~~i~k~~~~-----~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~--- 107 (541)
+-.-+.+++|+.|..|.+.+..+...... .....+....+.+.+.+.|++..|...| .++..+++......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 56789999999999999999887764422 1222234556777788999999999888 77777665332211
Q ss_pred --chhcHhhhHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 108 --DQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 108 --~~~~l~~~iP~L~e~-l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
.......++|.+.+. +.+..+.+|..++..+..+..... ..+.+++.+...+...++-||.++...+..+++
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 123467889999987 789999999999998877765432 223445566668888999999999999999999
Q ss_pred HhcCCCCC---ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 185 EIKNSPSV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 185 ~i~~~~~~---~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
.+|..... .++.+++.+...+.|+|+.||.+|...+.++-...|+.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 98743211 24567778888899999999999999888887665543
No 77
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.75 E-value=3.7e-05 Score=89.39 Aligned_cols=355 Identities=8% Similarity=0.003 Sum_probs=218.2
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHh------chhhhhHHHHHHHHHHHhhcCCC-------------------HH
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVV------RGDFIIFFNQIFDALCKLSADSD-------------------AN 88 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~------~~~~~~~~~~i~~~L~kl~~D~d-------------------~~ 88 (541)
...++.+-+.+|.+|=..+.+-=+.++... +....+++..+.+.+.+-+.-|+ .+
T Consensus 346 l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d 425 (1023)
T 4hat_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1023)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGG
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchH
Confidence 346677777888888666666545555432 12345777788888887555443 11
Q ss_pred HHHHHHHHHHHHhHhhcccchhcHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcC
Q 009182 89 VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLS 165 (541)
Q Consensus 89 VR~~A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d--~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~ 165 (541)
-++.=.....++..+..-.+..-+..++|.+.+.+.. .+++.|..++-+++.++..+..+ ..+++|.+++.|+++..
T Consensus 426 ~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~ 505 (1023)
T 4hat_C 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCV 505 (1023)
T ss_dssp GHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhh
Confidence 1111011111111111101223456678888777764 68999999999999998877654 67899999999999886
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc--------c
Q 009182 166 -----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL--------V 232 (541)
Q Consensus 166 -----D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l--------~ 232 (541)
|+..-||..++-.+++..+-+...+ ..++++++.+++.+.++++.++..|+..+..+++-++..+ .
T Consensus 506 ~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 4566678888888888877665432 2379999999999999999999999999999988766554 5
Q ss_pred cchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCC-ChHhHHHHHHHhc--------------CCCCHHHHH
Q 009182 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF-DVGPILSIATRQL--------------SSEWEATRI 297 (541)
Q Consensus 233 p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~-~l~~il~~L~~~L--------------~~~~~~~R~ 297 (541)
||++.++..+.....+-+++-+..+.++.+.+.+......... -++.+++.+...+ .+++...++
T Consensus 585 p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l 664 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII 664 (1023)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHH
Confidence 7999999999988876566656666777766644332110000 0111222111111 111112233
Q ss_pred H-HHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC-----------------CCCHHHH------HHHHHHHHHHhc----
Q 009182 298 E-ALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-----------------DPSDEVV------LLVLEVHACIAK---- 349 (541)
Q Consensus 298 a-al~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~-----------------D~~~~V~------~~~~~~L~~i~~---- 349 (541)
. .++.+..++...+....|++..++|.+++..+ .+.+.|| ...++++..+.+
T Consensus 665 ~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~ 744 (1023)
T 4hat_C 665 ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARN 744 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 34566677777778888888888887765432 1223333 223344444332
Q ss_pred ----chhhHHHHHHHHHHhccccc-----hhhhhhHHHHHHHhhccCCh
Q 009182 350 ----DLQHFRQLVVFLVHNFRVDN-----SLLEKRGALIIRRLCVLLDA 389 (541)
Q Consensus 350 ----~~~~f~~~m~~LL~~~~~~~-----~ll~~r~~~iir~Lc~~l~~ 389 (541)
...+..+++..++.-+.++. .-.-.-++.++.+++....+
T Consensus 745 ~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~ 793 (1023)
T 4hat_C 745 LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQ 793 (1023)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhh
Confidence 12345667777777665542 22223567788888765544
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.74 E-value=3.1e-07 Score=97.47 Aligned_cols=346 Identities=13% Similarity=0.063 Sum_probs=193.8
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCC------------CHHHHHHH-HHHHHHH
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS------------DANVQSAA-HLLDRLV 100 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~------------d~~VR~~A-~~L~~l~ 100 (541)
++.++..+...|+. ..++.|..+......-....=.-++|.|.+++.+. +++++.-| .+|.++.
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 34455555554444 24444555443322100000023456666666542 35777777 7777765
Q ss_pred hHhhcccchhc----------HhhhHHHHHHHhcCCC--HH-----HHH-------HHHHHHHHhhcCCCchhhhch--H
Q 009182 101 KDIVTESDQFS----------IEEFIPLLRERMNVLN--PY-----VRQ-------FLVGWITVLDSVPDIDMLGFL--P 154 (541)
Q Consensus 101 kdi~~e~~~~~----------l~~~iP~L~e~l~d~~--~~-----vR~-------~a~~~l~~L~~~~~~~l~~~l--p 154 (541)
..-..+..... +..+.|.+.+.++... .+ +|. .++.+|++++.-+ +.-..+ -
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~--e~R~~i~~~ 188 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE--EHRHAMNEL 188 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH--HHHHHHHHT
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH--HHHHHHHHC
Confidence 42211110000 1222344445554331 11 555 6777777774332 111111 1
Q ss_pred HHHHHHHHHcC----------C-CCHHHHHHHHHHHHHHHHHhcCCCCC-C---hHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009182 155 DFLDGLFNMLS----------D-SSHEIRQQADSALWEFLQEIKNSPSV-D---YGRMAEILVQRAASPDEFTRLTAITW 219 (541)
Q Consensus 155 ~~L~~L~~lL~----------D-~~~eVR~~a~~~L~~ll~~i~~~~~~-~---~~~ii~~Ll~~~~~~~~~vr~~al~w 219 (541)
..++.|.+++. | .+++++..|..+|..+... ..... . ....+|.|+..+++++++++..|+..
T Consensus 189 G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~--~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 266 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG--DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266 (458)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC--CcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 34555666662 2 3467888888998888631 10001 1 25679999999999999999999988
Q ss_pred HHHHHhhcCcCcccc--hhhHHHHHhhhc-CCCChhHHHHHHHHHHHHHHhhcCCCCCCC-hHhHHHHHHHhcCCCCH--
Q 009182 220 INEFVKLGGDQLVPY--YADILGAILPCI-SDKEEKIRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSSEWE-- 293 (541)
Q Consensus 220 L~~l~~~~~~~l~p~--l~~llp~ll~~l-~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~-l~~il~~L~~~L~~~~~-- 293 (541)
|..++.......... -...+|.++..+ ...++++++.|..+...+.....+....+- -...+|.|.+.+.+.+.
T Consensus 267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence 887754211111111 135677888864 445778887777666655421100000010 14578889888865432
Q ss_pred --HHHHHHHHHHHHHHh---hChHHHhhh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-chh---hHH--HHHHHH
Q 009182 294 --ATRIEALHWISTLLN---RHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQ---HFR--QLVVFL 361 (541)
Q Consensus 294 --~~R~aal~wL~~L~~---~~~~~i~~~-l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-~~~---~f~--~~m~~L 361 (541)
..+..|.-.|..+.. ..++..... -.+.+|.|++.|.+.+..++..++++|+.++. +++ .+. ..++.|
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~L 426 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 426 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 467777777777776 455543322 24679999999999999999999999999993 222 222 357888
Q ss_pred HHhccccchhhhhhHHHHHHHhhcc
Q 009182 362 VHNFRVDNSLLEKRGALIIRRLCVL 386 (541)
Q Consensus 362 L~~~~~~~~ll~~r~~~iir~Lc~~ 386 (541)
.+++++......+.+...+++|+..
T Consensus 427 v~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 427 KNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 8888766665667778888888765
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.74 E-value=2.5e-06 Score=77.41 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=157.4
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhh-cCCCHH-HHHHHHHHHHHHhHhh
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS-ADSDAN-VQSAAHLLDRLVKDIV 104 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~-~D~d~~-VR~~A~~L~~l~kdi~ 104 (541)
..|=.+++..++.++.|.-|.||+-|...+.++++....-+. .+...|.-++ .|..-. ..+-|.+++.+.+
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~--- 99 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK--- 99 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH----HHHHHHHHHHhhcccCchHHHHHHHHhHHHH---
Confidence 466678889999999999999999998888888764433333 3344444443 233222 2344455544433
Q ss_pred cccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 009182 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 105 ~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~ 184 (541)
. ...-+...+|.+++-.+-.+|++|-+.-..++.+....| ..+|.+...++.++++++..=|..|.+ |+.
T Consensus 100 -i-~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLn----Fi~ 169 (253)
T 2db0_A 100 -E-KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALN----FIE 169 (253)
T ss_dssp -H-CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHH----HHH
T ss_pred -h-CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHH----HHH
Confidence 1 223467889999999999999999999999998887766 457778888889999999777777643 555
Q ss_pred HhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 185 ~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
.+|...-.+..+++|.+...+.|.|+-||..|++.+..++...+ -+-+++...+.-+.|+...+.....+..+.+
T Consensus 170 alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np-----klRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 170 AMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND-----KLRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-----HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 55643223468899999999999999999999999999987554 3567777888889998877765555555544
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=5.4e-06 Score=93.78 Aligned_cols=288 Identities=11% Similarity=0.000 Sum_probs=184.1
Q ss_pred cchhHHHHhhcC---CCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCC--------HHHHHHH-HHHHH
Q 009182 31 QQIVPPVLNSFS---DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD--------ANVQSAA-HLLDR 98 (541)
Q Consensus 31 ~~ii~~vl~~l~---D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d--------~~VR~~A-~~L~~ 98 (541)
++.+..+-.++. ..+..+|..|+.+++-+....+. ++++.|...+.+++ +.+|.|| -+|.-
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 344555556665 67889999999998876543332 34444554444443 6788888 55544
Q ss_pred HHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCCCchhhhchHHHHHHHHHH-cCCCCHHHHHHHH
Q 009182 99 LVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD-SVPDIDMLGFLPDFLDGLFNM-LSDSSHEIRQQAD 176 (541)
Q Consensus 99 l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~-~~~~~~l~~~lp~~L~~L~~l-L~D~~~eVR~~a~ 176 (541)
..- .++. +.+++.|...+.+.++.+|..+.-.++.+- ...+. +.+..|++. ..|.+.++|+.+.
T Consensus 464 a~~----GS~~---eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAM----GSAN---IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HST----TCCC---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred Hhc----CCCC---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHH
Confidence 321 1111 234677777778888889988888888652 22322 222333333 2466888999988
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhh-hcCCCChhHHH
Q 009182 177 SALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP-CISDKEEKIRV 255 (541)
Q Consensus 177 ~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~-~l~d~~~~iR~ 255 (541)
-+|+-+. +++ ....+.++..+.. +.++.+|..++..++ +..+|..- +..+..++. +..|.+.++|.
T Consensus 530 lgLGll~--~g~--~e~~~~li~~L~~---~~dp~vRygaa~alg--lAyaGTGn----~~aIq~LL~~~~~d~~d~VRr 596 (963)
T 4ady_A 530 VGLALIN--YGR--QELADDLITKMLA---SDESLLRYGGAFTIA--LAYAGTGN----NSAVKRLLHVAVSDSNDDVRR 596 (963)
T ss_dssp HHHHHHT--TTC--GGGGHHHHHHHHH---CSCHHHHHHHHHHHH--HHTTTSCC----HHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHhhh--CCC--hHHHHHHHHHHHh---CCCHHHHHHHHHHHH--HHhcCCCC----HHHHHHHHHHhccCCcHHHHH
Confidence 8888553 221 1124555555543 678999999887666 22333332 344443333 44577889998
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH
Q 009182 256 VARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD 334 (541)
Q Consensus 256 ~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L-~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~ 334 (541)
.|.-+.+.+. +++ ++.++.+.+.+ .+.++.+|.+|..++|.+..+.|. +..+..|.+.++|+++
T Consensus 597 aAViaLGlI~--~g~-------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~ 661 (963)
T 4ady_A 597 AAVIALGFVL--LRD-------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVD 661 (963)
T ss_dssp HHHHHHHHHT--SSS-------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSH
T ss_pred HHHHHHHhhc--cCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCH
Confidence 8877776542 222 13355555555 577899999999999998876653 4567778888999999
Q ss_pred HHHHHHHHHHHHHhc--chh---hHHHHHHHHHHhccc
Q 009182 335 EVVLLVLEVHACIAK--DLQ---HFRQLVVFLVHNFRV 367 (541)
Q Consensus 335 ~V~~~~~~~L~~i~~--~~~---~f~~~m~~LL~~~~~ 367 (541)
.||..++.+|+.|.. ++. ....+...|.+.+.+
T Consensus 662 ~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 662 FVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 999999999999993 222 456666666665543
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.69 E-value=9.7e-07 Score=88.34 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=127.8
Q ss_pred chhHHHHh-hcCCCCHHHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHHHhhc-CCCHHHHHHH-HHHHHHHhHhhc
Q 009182 32 QIVPPVLN-SFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVT 105 (541)
Q Consensus 32 ~ii~~vl~-~l~D~d~~VR~~A~eaL~~i~k~~---~~~~~~~~~~i~~~L~kl~~-D~d~~VR~~A-~~L~~l~kdi~~ 105 (541)
..+|+++. +++++++.||..|+.++.+++..- +..+... ..+|.|.++++ +++..||..| .+|..++..-..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 46788999 999999999999999999998532 2222221 47888888886 6788999888 888888752211
Q ss_pred ccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 106 e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
....+.-...+|.|...+++.++.+|..++..+..+....+. ....+ ...++.|+.+|..++.+||+.|..+++.++
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 111222235699999999999999999999999998765332 22222 246788888999999999999999999887
Q ss_pred HHhcC------CCCCChHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 009182 184 QEIKN------SPSVDYGRMAEILVQRAASP--DEFTRLTAITWIN 221 (541)
Q Consensus 184 ~~i~~------~~~~~~~~ii~~Ll~~~~~~--~~~vr~~al~wL~ 221 (541)
..... .....+..++.--.+.++.. ..++...|...+.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 238 TDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp TTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 54110 00122444454445555533 2455544544443
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.68 E-value=4.3e-06 Score=94.61 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=181.8
Q ss_pred hhHHHHhhcCCCC--------HHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHh
Q 009182 33 IVPPVLNSFSDQD--------SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (541)
Q Consensus 33 ii~~vl~~l~D~d--------~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi 103 (541)
++..+...+.+++ ..+|..||.+|+-+.-..+. +++++.|...+.|.+..++.+| .+|.-+.-
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~dd~~~~~~~AalALGli~v-- 501 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN------IEVYEALKEVLYNDSATSGEAAALGMGLCML-- 501 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc--
Confidence 3444555666555 78999999988865321111 3667777777777777788666 66554422
Q ss_pred hcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 104 ~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
.+ .+...+..++..+. .+.+..+|.+++..++.+.--.+ ...+.++.. +..|.++-+|..+.-+++.-.
T Consensus 502 GT-gn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~g~~----e~~~~li~~---L~~~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 502 GT-GKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINYGRQ----ELADDLITK---MLASDESLLRYGGAFTIALAY 570 (963)
T ss_dssp TC-CCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCG----GGGHHHHHH---HHHCSCHHHHHHHHHHHHHHT
T ss_pred cc-CCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhCCCh----HHHHHHHHH---HHhCCCHHHHHHHHHHHHHHh
Confidence 11 12333444444443 46788999999999997643332 223444442 224788999998877766433
Q ss_pred HHhcCCCCCChHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhh-hcCCCChhHHHHHHHHH
Q 009182 184 QEIKNSPSVDYGRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP-CISDKEEKIRVVARETN 261 (541)
Q Consensus 184 ~~i~~~~~~~~~~ii~~Ll~-~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~-~l~d~~~~iR~~A~~~~ 261 (541)
...+ -...|..|+. +..++++.||..|+..|+.+ ..+.+ +.+|-++. .+.+.++.+|..|.-+.
T Consensus 571 aGTG------n~~aIq~LL~~~~~d~~d~VRraAViaLGlI-~~g~~-------e~v~rlv~~L~~~~d~~VR~gAalAL 636 (963)
T 4ady_A 571 AGTG------NNSAVKRLLHVAVSDSNDDVRRAAVIALGFV-LLRDY-------TTVPRIVQLLSKSHNAHVRCGTAFAL 636 (963)
T ss_dssp TTSC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TSSSC-------SSHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred cCCC------CHHHHHHHHHHhccCCcHHHHHHHHHHHHhh-ccCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2111 2233333333 23477889999999888743 23332 23444444 33467899999998888
Q ss_pred HHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC--CCHHHHHH
Q 009182 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLL 339 (541)
Q Consensus 262 ~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D--~~~~V~~~ 339 (541)
|.+. . +.....+++.|.....+.+..+|.+|+..++.+..+..+..-|.+.++...+.+..+| +++.++..
T Consensus 637 Gli~---a----Gn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fg 709 (963)
T 4ady_A 637 GIAC---A----GKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFG 709 (963)
T ss_dssp HHHT---S----SSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHhc---c----CCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHH
Confidence 7652 1 1234788898888889999999999999999999998888777778888888888877 45778887
Q ss_pred HHHHHHHHh
Q 009182 340 VLEVHACIA 348 (541)
Q Consensus 340 ~~~~L~~i~ 348 (541)
+.-+.+-+-
T Consensus 710 a~iAqGll~ 718 (963)
T 4ady_A 710 ACVAQGIMN 718 (963)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 777776665
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.66 E-value=4.6e-07 Score=93.05 Aligned_cols=222 Identities=11% Similarity=0.026 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCc--hhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC--CCh--HHHHH
Q 009182 126 LNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS--VDY--GRMAE 199 (541)
Q Consensus 126 ~~~~vR~~a~~~l~~L~~~~~~--~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~--~~~--~~ii~ 199 (541)
.++.+|..++..+.+++...+. ..+......++.|.++|..+++++|..|+.+|..+... .... ..+ ...+|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~k~~i~~~G~Ip 173 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR--ADVNSKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc--CCHHHHHHHHHCCCHH
Confidence 3578999999999999865432 12222456688888899999999999999999888531 0000 001 24577
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHHhhcCcCcccc--hhhHHHHHhhhcCCCCh----hHHHHHHHHHHHHHHhhcCCC
Q 009182 200 ILVQR-AASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEE----KIRVVARETNEELRAIKADPA 272 (541)
Q Consensus 200 ~Ll~~-~~~~~~~vr~~al~wL~~l~~~~~~~l~p~--l~~llp~ll~~l~d~~~----~iR~~A~~~~~~L~~~i~~~~ 272 (541)
.|++. .+++++.++..|...+..++...++.-... -...+|.+...+.+..+ ++++.|..+...+...+..+.
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 253 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 253 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH
Confidence 77775 456788898888887777765332211111 25788888888887543 477777666665543221111
Q ss_pred CC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 273 DG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 273 ~~---~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~-l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
+. +--...++.|.+.+.+.+..++..|...|..+....++..... -...+|.|.+.|.++++.++..++++|..++
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 00 0012468999999999999999999999999987666554332 2467999999999999999999999999999
Q ss_pred c
Q 009182 349 K 349 (541)
Q Consensus 349 ~ 349 (541)
.
T Consensus 334 ~ 334 (354)
T 3nmw_A 334 A 334 (354)
T ss_dssp T
T ss_pred c
Confidence 4
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.60 E-value=3.9e-09 Score=92.39 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=87.2
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~ 107 (541)
....-.+.+...++|+++.||..|+.++.++.. . . ++.|.+++.|+++.||..| .+|.++..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSS----T------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 344556788999999999999999988875431 1 1 4778889999999999998 66544321
Q ss_pred chhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 009182 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (541)
Q Consensus 108 ~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ 181 (541)
...+|.|.+.+.|+++.||..++.+++.+.. +..++.|.+.+.|+++.||..|..+|+.
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2348888899999999999999999998752 4556777789999999999999888753
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.59 E-value=2.7e-07 Score=94.34 Aligned_cols=281 Identities=13% Similarity=0.114 Sum_probs=146.1
Q ss_pred chhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchh
Q 009182 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (541)
Q Consensus 32 ~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~ 110 (541)
.+-+.++++++.+|...|+..-..+.++++. ..+.+ -+...+.|=++|+++-+|..| ..|.++.. ..
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-------~~ 135 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI----IVTSSLTKDMTGKEDSYRGPAVRALCQITD-------ST 135 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-------TT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-------HH
Confidence 4557788999999999999998888877765 33332 345666777899999999988 66655432 12
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 009182 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~ 190 (541)
-++.+.|.+.+++.|.+|.||+.|+-+...+....+.-. ..+++.+-.+++|.++-|.-.|..++.++. ...
T Consensus 136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~----~~d 207 (355)
T 3tjz_B 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----KRWVNEAQEAASSDNIMVQYHALGLLYHVR----KND 207 (355)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHhcCCCccHHHHHHHHHHHHH----hhc
Confidence 367789999999999999999999999988877665422 356777777999999999876655555443 111
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 191 ~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
...+..+++.+-.. .-.++.. -+.+++.+...++.+--..-+++++.+.++++..++.|--.|.++.-.+.. .
T Consensus 208 ~~a~~kLv~~l~~~-~l~~~~~---q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~---~ 280 (355)
T 3tjz_B 208 RLAVSKMISKFTRH-GLKSPFA---YCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG---C 280 (355)
T ss_dssp HHHHHHHHHHHHSS-CCSCHHH---HHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHhcC-CCcChHH---HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC---C
Confidence 01234444443321 1113332 234555444444433111246788888888988888776555544333211 0
Q ss_pred CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009182 271 PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (541)
Q Consensus 271 ~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~ 345 (541)
+ .-.+...++.+...+.+.+..+|..|++-+..+..+.|+-+..+.. .+..+++|++..+...|+.+|-
T Consensus 281 ~--~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~----~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 281 S--AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNL----DLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred C--HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHH----HHHHHccCCcHhHHHHHHHHhh
Confidence 0 0112333455555666677789999999999999999988876544 4577889998888776665553
No 86
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.56 E-value=2.6e-05 Score=86.51 Aligned_cols=370 Identities=15% Similarity=0.144 Sum_probs=226.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHH-----HhHhhcccc
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL-----VKDIVTESD 108 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l-----~kdi~~e~~ 108 (541)
+.+...+++ ..+|..|+-.|-.+.+..+.. .....++.+.+.+.+.+++.+.|+.| +.|.-+ .|+.+.+.
T Consensus 299 ~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~-~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d- 374 (778)
T 3opb_A 299 QLLERSLNV--EDVQIYSALVLVKTWSFTKLT-CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN- 374 (778)
T ss_dssp HHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT-TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC-
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC-cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC-
Confidence 333344443 467777776666555433211 12235788888888888776666666 877654 23333221
Q ss_pred hhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCch------h---hh--------------------chHH---
Q 009182 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDID------M---LG--------------------FLPD--- 155 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~------l---~~--------------------~lp~--- 155 (541)
..+++.|.+.+.+ .+..+-+.+++.+.++....+.. + .. ++.+
T Consensus 375 ----~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 375 ----ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp ----HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 3458888888885 77889999999999887643310 0 00 1112
Q ss_pred -------HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHh
Q 009182 156 -------FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF---TRLTAITWINEFVK 225 (541)
Q Consensus 156 -------~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~---vr~~al~wL~~l~~ 225 (541)
.++.|..+++.+++.+|..+..++..+...-......--+..++.++....+.... .|..|...+..+.-
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli 530 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 25667788888899999999999888863211000000145667777777666443 78888888877653
Q ss_pred hcC-cCcc-cch-hhHHHHHhhhcCC-CCh------------hH-HHHHHHHHHHHHHhhcCCC---CCC---Ch--HhH
Q 009182 226 LGG-DQLV-PYY-ADILGAILPCISD-KEE------------KI-RVVARETNEELRAIKADPA---DGF---DV--GPI 280 (541)
Q Consensus 226 ~~~-~~l~-p~l-~~llp~ll~~l~d-~~~------------~i-R~~A~~~~~~L~~~i~~~~---~~~---~l--~~i 280 (541)
... .... .|- ...+|.++..+.. +.. .. +-.|..+++.+. ..++ +.. -+ ...
T Consensus 531 s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLA---s~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 531 FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLA---SSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHSHHH
T ss_pred cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHh---cCCcccchHHHHHHHHhcCH
Confidence 221 1111 111 2677888887772 211 01 223333433332 2211 000 01 247
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHh-hhh----HH---HHHHHHHhcCCCCHHHHHHHHHHHHHHhc-ch
Q 009182 281 LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL-HFL----ND---IFDTLLKALSDPSDEVVLLVLEVHACIAK-DL 351 (541)
Q Consensus 281 l~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~-~~l----~~---l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-~~ 351 (541)
++.+.+.+.+++..+|.+|...+..+.. +|..+. .+. +. -++.|++.+...+.++|..+.++++.+++ ++
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence 8899999999999999999999999997 555431 222 22 38889999988899999999999999963 22
Q ss_pred h----hH--HHHHHHHHHhccc--cchhhhhhHHHHHHHhhccCCh-------------hhHHHHHHHHhcccC-ChHHH
Q 009182 352 Q----HF--RQLVVFLVHNFRV--DNSLLEKRGALIIRRLCVLLDA-------------ERVYRELSTILEGEA-DLDFA 409 (541)
Q Consensus 352 ~----~f--~~~m~~LL~~~~~--~~~ll~~r~~~iir~Lc~~l~~-------------e~i~~~l~~il~~~~-d~~f~ 409 (541)
. .+ ...+..++.++++ ++.-+..||..++++|-....+ .+...++..++...+ |-+++
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~ 766 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFS 766 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTT
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHH
Confidence 1 11 3567777777776 6777788999999999763211 345666666666643 33555
Q ss_pred HHHHHHh
Q 009182 410 CTMVQAL 416 (541)
Q Consensus 410 ~~~v~~L 416 (541)
+.|-.+|
T Consensus 767 ~~~~~~~ 773 (778)
T 3opb_A 767 AAIPVIL 773 (778)
T ss_dssp SHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 87
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.55 E-value=1.8e-06 Score=86.32 Aligned_cols=229 Identities=13% Similarity=0.040 Sum_probs=145.3
Q ss_pred hhHHHHhhcCCCCH------------HHHHHHHHHHHHHHHHhch--hhhhHHHHHHHHHHH-hhcCCCHHHHHHH-HHH
Q 009182 33 IVPPVLNSFSDQDS------------RVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCK-LSADSDANVQSAA-HLL 96 (541)
Q Consensus 33 ii~~vl~~l~D~d~------------~VR~~A~eaL~~i~k~~~~--~~~~~~~~i~~~L~k-l~~D~d~~VR~~A-~~L 96 (541)
.++.++..+.|+++ .-|..|.+.|.++++.... .+. -...+|.|.+ ++.+++++||..| .+|
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~--~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFC--QLSGMHLLVGRYLEAGAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHH--HTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHH--HcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34556666666632 3455666666666643211 111 0135678888 9999999999999 888
Q ss_pred HHHHhHhhcccchhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCchhhhch-HHHHHHHHHHcCCCCHHHHHH
Q 009182 97 DRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQ 174 (541)
Q Consensus 97 ~~l~kdi~~e~~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~l-p~~L~~L~~lL~D~~~eVR~~ 174 (541)
..+..+-..-.....-...+|.|...+.+ +++.+|..++.+++.+....+.....+. ...++.|..++.+++..||..
T Consensus 107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~ 186 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK 186 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 77654211000001112348888888884 5899999999999998754332211111 246778888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC------cccchhhHHHHHhhhc
Q 009182 175 ADSALWEFLQEIKNSPSVD--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ------LVPYYADILGAILPCI 246 (541)
Q Consensus 175 a~~~L~~ll~~i~~~~~~~--~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~------l~p~l~~llp~ll~~l 246 (541)
|+.++..+...-.. .... -..++|.++..+.++++.+|..|+..++.++...+.. ..+.+..++.-....+
T Consensus 187 A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~l 265 (296)
T 1xqr_A 187 SAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265 (296)
T ss_dssp HHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChH-HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHc
Confidence 99999999864110 0001 1468899999999999999999999999887663221 1122444554445555
Q ss_pred CCC--ChhHHHHHHHHHHHH
Q 009182 247 SDK--EEKIRVVARETNEEL 264 (541)
Q Consensus 247 ~d~--~~~iR~~A~~~~~~L 264 (541)
... ..++.+.|.+....+
T Consensus 266 q~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 266 QQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp TTCGGGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 532 345665555555444
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.55 E-value=5.3e-06 Score=81.07 Aligned_cols=193 Identities=8% Similarity=-0.018 Sum_probs=146.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC--C
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--D 193 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~--~ 193 (541)
=+-+...+.+.++.-|..++..+....+..+.++...++-+++-+--.+.|++..|-..+.+.+..++......... +
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 34556667778899999999988876655555555555554443333345999999888888888887766543211 1
Q ss_pred --hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC
Q 009182 194 --YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (541)
Q Consensus 194 --~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~ 271 (541)
...++|+++..+.|+.+.+|..+-..+..+..+++ -+++.+.+.+++...+...|..+....+.+.+..+..
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999998888887777654 2468888899999989999988888777776655432
Q ss_pred CCCCChHhHH---HHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhH
Q 009182 272 ADGFDVGPIL---SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (541)
Q Consensus 272 ~~~~~l~~il---~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~ 319 (541)
....+ |.+.+.+.+.+..+|.+|+.++..++...++.+..+++
T Consensus 202 -----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 202 -----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAG 247 (266)
T ss_dssp -----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHC
T ss_pred -----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 23456 88999999999999999999999999999988876554
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.54 E-value=7.7e-07 Score=91.39 Aligned_cols=233 Identities=14% Similarity=0.029 Sum_probs=154.8
Q ss_pred hhHHHHhhcC-----------CCCHHHHHHHHHHHHHHHHHhch--hhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHH
Q 009182 33 IVPPVLNSFS-----------DQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDR 98 (541)
Q Consensus 33 ii~~vl~~l~-----------D~d~~VR~~A~eaL~~i~k~~~~--~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~ 98 (541)
.+++++..+. ..+..+|..|+.+|.|++..-.+ .....-..++|.|.+++.+++++|+..| .+|..
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 153 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5566666662 13578999999999999743211 1111113568999999999999999998 77777
Q ss_pred HHhHhhccc-chhcHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCCchhhhc--hHHHHHHHHHHcCCCCH----H
Q 009182 99 LVKDIVTES-DQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNMLSDSSH----E 170 (541)
Q Consensus 99 l~kdi~~e~-~~~~l~~~iP~L~e~l-~d~~~~vR~~a~~~l~~L~~~~~~~l~~~--lp~~L~~L~~lL~D~~~----e 170 (541)
+...--.+. ....-...||.|.+.+ +..++.+++.++..+..++...+..-... -...++.|.+++.+.+. +
T Consensus 154 Ls~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~ 233 (354)
T 3nmw_A 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233 (354)
T ss_dssp HHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCH
T ss_pred HhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHH
Confidence 653100000 0011123488888864 56789999999999999987442211111 34567888889986654 5
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-C-Ch--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch--hhHHHHHhh
Q 009182 171 IRQQADSALWEFLQEIKNSPS-V-DY--GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILP 244 (541)
Q Consensus 171 VR~~a~~~L~~ll~~i~~~~~-~-~~--~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l--~~llp~ll~ 244 (541)
+++.|+.+|..+...+-.... . .+ ...+|.+++.+++++..++..|+..|..++.-.++ -...+ ...+|.+..
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~ 312 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKN 312 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHH
Confidence 898888888877642110000 0 01 34789999999999999999999988887632221 11112 366899999
Q ss_pred hcCCCChhHHHHHHHHHHHHHH
Q 009182 245 CISDKEEKIRVVARETNEELRA 266 (541)
Q Consensus 245 ~l~d~~~~iR~~A~~~~~~L~~ 266 (541)
.+...++++|+.|..+...+..
T Consensus 313 LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 313 LIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHHc
Confidence 9988899999888888777753
No 90
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.52 E-value=1.2e-08 Score=99.14 Aligned_cols=185 Identities=21% Similarity=0.136 Sum_probs=129.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhH
Q 009182 38 LNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFI 116 (541)
Q Consensus 38 l~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~i 116 (541)
...++|+++.||..|+..+. ...+.++++|+++.||..| ..| . .
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~-----------------~~~l~~L~~D~~~~VR~~aA~~L--------~----------~ 100 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP-----------------VEALTPLIRDSDEVVRRAVAYRL--------P----------R 100 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC-----------------GGGGGGGTTCSSHHHHHHHHTTS--------C----------S
T ss_pred HHHhcCCCHHHHHHHHHhCC-----------------HHHHHHHccCcCHHHHHHHHHHC--------C----------H
Confidence 34569999999999987431 1235678999999999988 321 1 1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHH
Q 009182 117 PLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR 196 (541)
Q Consensus 117 P~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ 196 (541)
+.+...++|+++.||..+...+ +. . .+..+++|++++||..+...+ . .
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l------~~--------~---~L~~L~~D~d~~VR~~aA~~l-------~----~---- 148 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL------PL--------E---QLEQMAADRDYLVRAYVVQRI-------P----P---- 148 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS------CT--------G---GGGGGTTCSSHHHHHHHHHHS-------C----G----
T ss_pred HHHHHHHcCCCHHHHHHHHHhC------CH--------H---HHHHHHcCCCHHHHHHHHHhc-------C----H----
Confidence 3456778999999999998843 21 1 234578999999999987631 1 1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCC
Q 009182 197 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 276 (541)
Q Consensus 197 ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~ 276 (541)
+.+....+|+++.||..+... .+. +.+...+.|++++||..+... + .
T Consensus 149 --~~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~---l-----------~ 195 (244)
T 1lrv_A 149 --GRLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASR---L-----------R 195 (244)
T ss_dssp --GGGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHH---C-----------C
T ss_pred --HHHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHh---C-----------C
Confidence 233456789999999988753 111 334467789999999887653 1 0
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009182 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (541)
Q Consensus 277 l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L 344 (541)
. +.+...+.+++|.+|.++..-++ .+. +..|.|++..||..+.+.|
T Consensus 196 ~----~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~-L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 196 G----DDLLELLHDPDWTVRLAAVEHAS-----------------LEA-LRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp G----GGGGGGGGCSSHHHHHHHHHHSC-----------------HHH-HHHCCCCCHHHHHHHHCCC
T ss_pred H----HHHHHHHcCCCHHHHHHHHHcCC-----------------HHH-HHHccCCCHHHHHHHHHHh
Confidence 1 34555678999999999998643 133 3445999999999876544
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.9e-05 Score=86.15 Aligned_cols=315 Identities=11% Similarity=0.063 Sum_probs=203.2
Q ss_pred cchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh--chhhhhHHHHHHHHHHHhhcC-CCHHHHHHH-HHHHHHHhHhhc-
Q 009182 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV--RGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT- 105 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~--~~~~~~~~~~i~~~L~kl~~D-~d~~VR~~A-~~L~~l~kdi~~- 105 (541)
..+.+.+.+.+.+++...|..|.|.|..+.... +..+. .=...++.|.+++.+ .+.++--|+ ..+.+++...-.
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~-~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR-SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH-HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH-hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 446677888998888778999999988765321 11111 112345556665553 455555555 555554331110
Q ss_pred -------------------c--c--c---------h-----hcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc-
Q 009182 106 -------------------E--S--D---------Q-----FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI- 147 (541)
Q Consensus 106 -------------------e--~--~---------~-----~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~- 147 (541)
+ . . + ..=...+|.|...+.+.++.+|..++..+..++.-++.
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 0 0 0 0 01123689999999999999999999999999755332
Q ss_pred -hhhhchHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHHhcCC---CCCChHHHHHHHHHhcCC-CC----------
Q 009182 148 -DMLGFLPDFLDGLFNMLSDSSHE---IRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAAS-PD---------- 209 (541)
Q Consensus 148 -~l~~~lp~~L~~L~~lL~D~~~e---VR~~a~~~L~~ll~~i~~~---~~~~~~~ii~~Ll~~~~~-~~---------- 209 (541)
.+.. ...++.|+.++...... +|..|..+|..++...... +.......+|.|++.+.. ++
T Consensus 492 ~~lvq--qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 492 PQLAQ--QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp HHHHH--TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHH--CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 1222 24466777788776544 8999999999988432100 011112677888877662 21
Q ss_pred --H-HHHHHHHHHHHHHHhhcC---cCccc-chh--hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC-CCCCCh--
Q 009182 210 --E-FTRLTAITWINEFVKLGG---DQLVP-YYA--DILGAILPCISDKEEKIRVVARETNEELRAIKADP-ADGFDV-- 277 (541)
Q Consensus 210 --~-~vr~~al~wL~~l~~~~~---~~l~p-~l~--~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~-~~~~~l-- 277 (541)
+ .-+..|+..|..++...+ ++... .+. ..+|.+...|.++++.||.+|.++...++..-..- ..-++.
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~ 649 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN 649 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence 1 226788888999988763 22221 232 57899999999889999999998887775321100 001111
Q ss_pred Hh---HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhh--hhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHh
Q 009182 278 GP---ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH--FLNDIFDTLLKALSD--PSDEVVLLVLEVHACIA 348 (541)
Q Consensus 278 ~~---il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~--~l~~l~p~Ll~~L~D--~~~~V~~~~~~~L~~i~ 348 (541)
+. =++.|...+..++..+|.+|.-++..+....+..... -.++.++.++..|.| +++++|+.++-++..++
T Consensus 650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 12 2788999999999999999998888887777653222 224678888899998 89999999998888887
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.50 E-value=6e-05 Score=71.18 Aligned_cols=220 Identities=13% Similarity=0.096 Sum_probs=165.1
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch-hhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchh
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~-~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~ 110 (541)
.+..+...++|+|+.|+.-|..++.++.|...+ .-.....+++|.+.++..+.+.-|.--| ..+..++++..- +..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL--~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM--GSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB--CHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC--CHH
Confidence 556678888999999999999999999987532 2345568999999999999999887777 778887775543 234
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 009182 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~ 190 (541)
+..+++..+...+..+++-.+..+.+.++.+ ++ ....|.+..-++.+++-.+++++.++..++-... ....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv-----~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia---~~S~ 182 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP-----LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML---NSSA 182 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB-----SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG---GGCS
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc-----ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh---cccC
Confidence 5678899999999999999999999999988 22 2446788888888998889999998866644443 4333
Q ss_pred CC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-CcCcccchhhHHHHHhhhcC--CCChhHHHHHHHHHHHH
Q 009182 191 SV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCIS--DKEEKIRVVARETNEEL 264 (541)
Q Consensus 191 ~~-~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~-~~~l~p~l~~llp~ll~~l~--d~~~~iR~~A~~~~~~L 264 (541)
++ .+..++.-+-...++.|+.++..|+..+.++.... .++..+-+-+++..+= .+. +..|.+|.-|..+...+
T Consensus 183 D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~-~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 183 DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD-GLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH-HGGGCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH-HHHHhcCChhHHHHHHHHHHHH
Confidence 33 36777777777788899999999998888776542 3444444445554444 444 46799998888776554
No 93
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.34 E-value=3.6e-06 Score=88.49 Aligned_cols=218 Identities=12% Similarity=0.132 Sum_probs=152.8
Q ss_pred hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-----hhhchHHHHHHHHHH--------cCCC-CHHHHHH
Q 009182 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-----MLGFLPDFLDGLFNM--------LSDS-SHEIRQQ 174 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-----l~~~lp~~L~~L~~l--------L~D~-~~eVR~~ 174 (541)
..+.+ +...|..-+-++++++|-+|.-.+..+....+.. -... +-...-++-+ .+|. ...||+.
T Consensus 170 eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRET 247 (800)
T 3oc3_A 170 ENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDA 247 (800)
T ss_dssp CSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHH
T ss_pred CCHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHH
Confidence 45566 8888888899999999999999999876654321 1112 2233333322 2342 4679999
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHH
Q 009182 175 ADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 254 (541)
Q Consensus 175 a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR 254 (541)
|+++|+.+ ..... + -.++..|+...+.+.|++|..++-+++.+.+ ++.-++.++|.++.+++|++++||
T Consensus 248 aAQtLGaL-~hLp~----e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D-----LL~~Ld~Vv~aVL~GL~D~DDDVR 316 (800)
T 3oc3_A 248 AAYLLSRI-YPLIG----P-NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE-----FVEDKDGLCRKLVSLLSSPDEDIK 316 (800)
T ss_dssp HHHHHHHH-TTTSC----S-CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG-----GCCCHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHH-HhCCh----h-HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH-----HHHHHHHHHHHHHhhcCCcccHHH
Confidence 99999997 54432 2 3566666667788899999999988887732 322289999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC
Q 009182 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP 332 (541)
Q Consensus 255 ~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~--~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~ 332 (541)
.+|.+++..+. . .-.++.++..+-+.|. ++-...--+.+..|..|+...+. ....+.++|-|.+.|..+
T Consensus 317 AVAAetLiPIA---~----p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt 387 (800)
T 3oc3_A 317 LLSAELLCHFP---I----TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP 387 (800)
T ss_dssp HHHHHHHTTSC---C----SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS
T ss_pred HHHHHHhhhhc---c----hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC
Confidence 99988765442 1 1236777777766663 23233455666777777776542 122348888888889999
Q ss_pred CHHHHHHHHHHHHHHh
Q 009182 333 SDEVVLLVLEVHACIA 348 (541)
Q Consensus 333 ~~~V~~~~~~~L~~i~ 348 (541)
.++||..+++++..+.
T Consensus 388 ITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLS 403 (800)
T ss_dssp SHHHHHHHHHHTTTCC
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999887766
No 94
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.34 E-value=4.2e-06 Score=87.96 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=163.9
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchh-----hhhHHHHHHHHHH--------HhhcCC-CHHHHHHH-HHHH
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-----FIIFFNQIFDALC--------KLSADS-DANVQSAA-HLLD 97 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~-----~~~~~~~i~~~L~--------kl~~D~-d~~VR~~A-~~L~ 97 (541)
+...+..-+-|++|++|..|+.+|-++.+..+.. .... .-....+| ..++|. -+-||+.| ++|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 6678888999999999999999999999886421 1111 11222222 134553 45799999 8888
Q ss_pred HHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHH
Q 009182 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADS 177 (541)
Q Consensus 98 ~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~ 177 (541)
.+ +-+..+ -.++-.+......+.++||...+-.+.-+ .+++.-+|.+++.+...|.|.+.|||..|+.
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 87 533322 12233333455778899999999888877 4444448999999999999999999999988
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHH
Q 009182 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLT--AITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (541)
Q Consensus 178 ~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~--al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~ 255 (541)
+|..+. . ...++.++..+-.++.+.|+.-..+ .+..+..++......- -.|.++|-+.|.+..+..+||.
T Consensus 322 tLiPIA---~---p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 322 LLCHFP---I---TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS--IPPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp HHTTSC---C---SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTGGGGTCSSHHHHH
T ss_pred Hhhhhc---c---hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc--cChHHHHHHHhhhcCCcHHHHH
Confidence 866554 1 2348889998888877655422222 2455666666554322 2369999999999999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHhHHHHHHHh-cCCCCHHHHHHHHHHH
Q 009182 256 VARETNEELRAIKADPADGFDVGPILSIATRQ-LSSEWEATRIEALHWI 303 (541)
Q Consensus 256 ~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~-L~~~~~~~R~aal~wL 303 (541)
++.++...+. .+.++..+-+. +-.++.++|..+++.+
T Consensus 394 AVL~TL~tfL-----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 394 SILNMVKNLS-----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHTTTCC-----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 8877764442 35566655544 4677888888888755
No 95
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.32 E-value=0.00027 Score=82.12 Aligned_cols=393 Identities=12% Similarity=0.160 Sum_probs=210.3
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhh--------hhHHHHHHHHHHHhhcCCCHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--------IIFFNQIFDALCKLSADSDAN 88 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~--------~~~~~~i~~~L~kl~~D~d~~ 88 (541)
+.|.+-+..-.+|++.++.-++..+.|+++.|+.+||.++..|++.|+... .+|.++++..+.+...+-++.
T Consensus 551 grY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~ 630 (1073)
T 3gjx_A 551 GQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQ 630 (1073)
T ss_dssp HHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHH
T ss_pred hhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHH
Confidence 444444555568888899999999999999999999999999999997654 358888888888777665543
Q ss_pred HHHHH-HHHHHHHhHhhccc-chhcHhhhHHHHHHHhcC------------CCHHHHHHHHHHHH---HhhcCCCchhhh
Q 009182 89 VQSAA-HLLDRLVKDIVTES-DQFSIEEFIPLLRERMNV------------LNPYVRQFLVGWIT---VLDSVPDIDMLG 151 (541)
Q Consensus 89 VR~~A-~~L~~l~kdi~~e~-~~~~l~~~iP~L~e~l~d------------~~~~vR~~a~~~l~---~L~~~~~~~l~~ 151 (541)
-...- ++++.++.....+. ....++.++|...+.... .++.+-.-+...+. .+++..|..+.+
T Consensus 631 ~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~ 710 (1073)
T 3gjx_A 631 QVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVI 710 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHH
Confidence 22222 45554444333221 133456666666555432 13432233333333 344455666777
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC-
Q 009182 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ- 230 (541)
Q Consensus 152 ~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~- 230 (541)
+++.+.+.++++. +...+.+...+..-|... .-.+ .+.+++ .+|.+.+.-+..++...++.
T Consensus 711 ~~~~i~~~~l~~y--------~~~s~~i~~~v~~~g~~~--~~~~----~~~~~r----~ik~eil~l~~~~i~~~~~~~ 772 (1073)
T 3gjx_A 711 QLGRIYLDMLNVY--------KCLSENISAAIQANGEMV--TKQP----LIRSMR----TVKRETLKLISGWVSRSNDPQ 772 (1073)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHCGGG--GSSH----HHHHHH----HHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHhCCchh--hccH----HHHHHH----HHHHHHHHHHHHHHhcCCCHH
Confidence 7766666555322 111122222221111000 0001 111111 24445544444444333210
Q ss_pred --cccchhhHHHHHhhhcCCCC-----hhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHH----HHhcC---CCCHHHH
Q 009182 231 --LVPYYADILGAILPCISDKE-----EKIRVVARETNEELRAIKADPADGFDVGPILSIA----TRQLS---SEWEATR 296 (541)
Q Consensus 231 --l~p~l~~llp~ll~~l~d~~-----~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L----~~~L~---~~~~~~R 296 (541)
...++|.++..++.--..+. +++-........++...+. -.++.++..+ .+++. ++..++|
T Consensus 773 ~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~-----~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r 847 (1073)
T 3gjx_A 773 MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHIT-----AEIPQIFDAVFECTLNMINKDFEEYPEHR 847 (1073)
T ss_dssp HHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTG-----GGHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHhCCcccCcHHH
Confidence 22345666666555333333 4433333333333322222 1234444443 33332 3567799
Q ss_pred HHHHHHHHHHHhhChHHHhh----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----cc--------hhhHHHHHHH
Q 009182 297 IEALHWISTLLNRHRTEVLH----FLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KD--------LQHFRQLVVF 360 (541)
Q Consensus 297 ~aal~wL~~L~~~~~~~i~~----~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~----~~--------~~~f~~~m~~ 360 (541)
..=.+.+..+..+|+..+.. ....++..++-.++++..+|-..+++.+..+- .. ..||-.++..
T Consensus 848 ~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~ 927 (1073)
T 3gjx_A 848 TNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQH 927 (1073)
T ss_dssp HHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765 34557788888899999998888887766554 21 2345555555
Q ss_pred HHHhc-cccchhhhhhHHHHHHHhhccC----------------ChhhHHHHHHHHhccc-CCh--HHHHHHHHHhHHhh
Q 009182 361 LVHNF-RVDNSLLEKRGALIIRRLCVLL----------------DAERVYRELSTILEGE-ADL--DFACTMVQALNLIL 420 (541)
Q Consensus 361 LL~~~-~~~~~ll~~r~~~iir~Lc~~l----------------~~e~i~~~l~~il~~~-~d~--~f~~~~v~~L~~il 420 (541)
++..+ .++.+-.=+.-..++++|...+ |.+.+...+++.|... .++ .-+..+|+.|-.
T Consensus 928 i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~-- 1005 (1073)
T 3gjx_A 928 IFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFS-- 1005 (1073)
T ss_dssp HHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH--
T ss_pred HHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--
Confidence 55544 2333211122244555554442 2245566666666442 222 222333333211
Q ss_pred cCcHhHHHHHHHHhh
Q 009182 421 LTSSELSELRDLLKK 435 (541)
Q Consensus 421 ~t~~el~~~R~~L~~ 435 (541)
...+...||..||+
T Consensus 1006 -~~~d~~~f~~~lrD 1019 (1073)
T 3gjx_A 1006 -LNQDIPAFKEHLRD 1019 (1073)
T ss_dssp -STTCHHHHHHHHHH
T ss_pred -hcCCHHHHHHHHHH
Confidence 23456777777776
No 96
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.31 E-value=2.1e-05 Score=80.34 Aligned_cols=301 Identities=15% Similarity=0.094 Sum_probs=168.8
Q ss_pred hhHHHHhhcCCC--CHHHHH-HHHHHHHHHHHHhchhhhh--HHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 33 IVPPVLNSFSDQ--DSRVRY-YACEALYNIAKVVRGDFII--FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 33 ii~~vl~~l~D~--d~~VR~-~A~eaL~~i~k~~~~~~~~--~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
+++. .+.|+++ |++.+. +....+|-+.. |+-++ -...+|+.+.|+++.+|...|+-. -.+....+ .
T Consensus 27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~---G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~----~ 98 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKCAHILTKILYLINQ---GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSC----I 98 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTT----T
T ss_pred HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHC---CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----C
Confidence 5544 5799988 655533 44444554442 22211 124789999999999999999987 33333322 2
Q ss_pred cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 009182 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i 186 (541)
. +..+ ..+..+..=++++||.+|..++..++.+..- ..++.+.+.+-+.+.|.++-||+.|.-+...+.
T Consensus 99 ~-~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~--- 167 (355)
T 3tjz_B 99 A-EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLL--- 167 (355)
T ss_dssp S-SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT---
T ss_pred H-HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh---
Confidence 2 2233 7788888999999999999999988876432 235566777888999999999999987766554
Q ss_pred cCCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 187 KNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 187 ~~~~~~~-~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
.. .++ .+.+++.+-+...+.++.|...|+..+.++.+..+. .+.++++.+-.+ .-.+|-.. . .+.
T Consensus 168 ~~--~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~----a~~kLv~~l~~~-~l~~~~~q---~----~ll 233 (355)
T 3tjz_B 168 KC--SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL----AVSKMISKFTRH-GLKSPFAY---C----MMI 233 (355)
T ss_dssp TT--CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHSS-CCSCHHHH---H----HHH
T ss_pred cc--CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH----HHHHHHHHHhcC-CCcChHHH---H----HHH
Confidence 22 133 467788888889999999998888888877654322 345566655432 11112110 1 122
Q ss_pred HhhcCCC--C-CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 009182 266 AIKADPA--D-GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (541)
Q Consensus 266 ~~i~~~~--~-~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~ 342 (541)
+.+.... + .-.-+.+++.+...+++.+..+-.+|.+.+..+....+... ......+...|+.+++++|..+++
T Consensus 234 r~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~----~~a~~~L~~fLss~d~niryvaLr 309 (355)
T 3tjz_B 234 RVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKEL----APAVSVLQLFCSSPKAALRYAAVR 309 (355)
T ss_dssp HHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHH
T ss_pred HHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHH----HHHHHHHHHHHcCCCchHHHHHHH
Confidence 2221110 1 11235788888888999999999999999988766332222 222344555677788899999999
Q ss_pred HHHHHhc-chhhHHHHHHHHHHhccccch
Q 009182 343 VHACIAK-DLQHFRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 343 ~L~~i~~-~~~~f~~~m~~LL~~~~~~~~ 370 (541)
.+..+.. ++.-...--..+.+++.+.++
T Consensus 310 ~L~~l~~~~P~~v~~~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 310 TLNKVAMKHPSAVTACNLDLENLVTDANR 338 (355)
T ss_dssp CC---------------------------
T ss_pred HHHHHHHHCcHHHHHHHHHHHHHccCCcH
Confidence 9999984 333444445555666665554
No 97
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.30 E-value=1.6e-07 Score=91.14 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=114.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhh
Q 009182 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE 114 (541)
Q Consensus 36 ~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~ 114 (541)
.+...++|+++.||+.|+..+. . +.+.++++|++..||.++ ..+ .
T Consensus 78 ~l~~L~~D~~~~VR~~aA~~L~-------~----------~~L~~ll~D~d~~VR~~aA~~l--------~--------- 123 (244)
T 1lrv_A 78 ALTPLIRDSDEVVRRAVAYRLP-------R----------EQLSALMFDEDREVRITVADRL--------P--------- 123 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSC-------S----------GGGGGTTTCSCHHHHHHHHHHS--------C---------
T ss_pred HHHHHccCcCHHHHHHHHHHCC-------H----------HHHHHHHcCCCHHHHHHHHHhC--------C---------
Confidence 3556679999999999986531 1 346678999999999988 421 1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh
Q 009182 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (541)
Q Consensus 115 ~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~ 194 (541)
.+.+....+|+++.||..+...+ ++ . .+..+++|++++||..+... +.
T Consensus 124 -~~~L~~L~~D~d~~VR~~aA~~l------~~--------~---~l~~l~~D~d~~VR~~aa~~-------l~------- 171 (244)
T 1lrv_A 124 -LEQLEQMAADRDYLVRAYVVQRI------PP--------G---RLFRFMRDEDRQVRKLVAKR-------LP------- 171 (244)
T ss_dssp -TGGGGGGTTCSSHHHHHHHHHHS------CG--------G---GGGGTTTCSCHHHHHHHHHH-------SC-------
T ss_pred -HHHHHHHHcCCCHHHHHHHHHhc------CH--------H---HHHHHHcCCCHHHHHHHHHc-------CC-------
Confidence 11244557899999999999731 21 1 22357899999999998665 11
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC
Q 009182 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG 274 (541)
Q Consensus 195 ~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~ 274 (541)
. +.+....+|+++.||..+..-+ + .+.+...+.|++..||..+.+..+
T Consensus 172 ~---~ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~Ll~D~d~~VR~~aa~~l~------------ 219 (244)
T 1lrv_A 172 E---ESLGLMTQDPEPEVRRIVASRL-------R----------GDDLLELLHDPDWTVRLAAVEHAS------------ 219 (244)
T ss_dssp G---GGGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGGGGGCSSHHHHHHHHHHSC------------
T ss_pred H---HHHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHHHHcCCCHHHHHHHHHcCC------------
Confidence 0 2344567899999999987532 1 145677789999999988877532
Q ss_pred CChHhHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009182 275 FDVGPILSIATRQLSSEWEATRIEALHWIS 304 (541)
Q Consensus 275 ~~l~~il~~L~~~L~~~~~~~R~aal~wL~ 304 (541)
.+.+.. |.+++|.+|.++..-|+
T Consensus 220 ------~~~L~~-L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ------LEALRE-LDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ------HHHHHH-CCCCCHHHHHHHHCCC-
T ss_pred ------HHHHHH-ccCCCHHHHHHHHHHhC
Confidence 244444 48899999999876543
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.23 E-value=0.00027 Score=66.77 Aligned_cols=218 Identities=19% Similarity=0.112 Sum_probs=160.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~ 194 (541)
+-.+.+.+++.|+.+|..++..++.+.+-.+.. =...+..++|.+.+++.+.+.-|--.|.+|++.++..++-. ..++
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~~y 113 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SKTF 113 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HHHH
Confidence 677888889999999999999999988765433 34567788888888999999999999999999999654311 1248
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCC
Q 009182 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG 274 (541)
Q Consensus 195 ~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~ 274 (541)
..++..+..-..++++-.+..+...++.+ ......++++..+...++..+++++.+|..+...+ ....++.
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei---a~~S~D~ 184 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNM---LNSSADS 184 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---GGGCSSC
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHh---hcccCCH
Confidence 89999999999999999999998888766 23335789999999999778899998887765544 3322223
Q ss_pred CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-ChHHHhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHH
Q 009182 275 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALS--DPSDEVVLLVLEVH 344 (541)
Q Consensus 275 ~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~-~~~~i~~~l~~l~p~Ll~~L~--D~~~~V~~~~~~~L 344 (541)
-.+..++.-+...+++++...+.-|+..+-.+... -++++.+-+-.+. ...+.|. ...|.+|.+|-.+.
T Consensus 185 ~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 185 GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKIS-RIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHH-HHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHH-HHHHHHHHhcCChhHHHHHHHHH
Confidence 34677888888999999999999999988665554 2333322222222 2233343 44677777664433
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.19 E-value=2e-06 Score=74.91 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=71.6
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcH
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l 112 (541)
++.+...++|+++.||..|+.++.++.. ++.++.|.+++.|+++.||.+| .+|.++..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------
Confidence 5889999999999999999999887642 3567888888899999999999 77766531
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITV 140 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~ 140 (541)
...+|.|.+.++|+++.||..++.+++.
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2348889999999999999999988764
No 100
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.87 E-value=0.0031 Score=74.70 Aligned_cols=327 Identities=10% Similarity=0.087 Sum_probs=179.7
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc--h---hhhhHH-HHHHHHHHHhh--------cCCCHHHHHHH-HHHH
Q 009182 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--G---DFIIFF-NQIFDALCKLS--------ADSDANVQSAA-HLLD 97 (541)
Q Consensus 33 ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~--~---~~~~~~-~~i~~~L~kl~--------~D~d~~VR~~A-~~L~ 97 (541)
+++.+...++| +++|.+|+++|..++..-. + .....+ ...+..++... +|.+.+++++- ..+.
T Consensus 250 ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~ 327 (1204)
T 3a6p_A 250 LLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLC 327 (1204)
T ss_dssp HHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHH
Confidence 55666666665 5699999999999885321 1 122222 11122333332 22234444444 4444
Q ss_pred HHHhHhhc---c----cchhcHhhhHHHHHHHhcCCCHHHHHHHHH-HHHHhhcC---CCchhhhchHHHHHHHHH---H
Q 009182 98 RLVKDIVT---E----SDQFSIEEFIPLLRERMNVLNPYVRQFLVG-WITVLDSV---PDIDMLGFLPDFLDGLFN---M 163 (541)
Q Consensus 98 ~l~kdi~~---e----~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~-~l~~L~~~---~~~~l~~~lp~~L~~L~~---l 163 (541)
.+...+.. + .....+..+++.+.+++.+++..+-..++. |...+... ....+.++++.+++.+.. -
T Consensus 328 ~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k 407 (1204)
T 3a6p_A 328 ALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVK 407 (1204)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 44332221 1 123457899999999999998888888775 44444332 123366788888888832 2
Q ss_pred cCC-----------------CCH-------HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCC-----------
Q 009182 164 LSD-----------------SSH-------EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP----------- 208 (541)
Q Consensus 164 L~D-----------------~~~-------eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~----------- 208 (541)
+.- .+. +-|+.....+..+....+ ...+..+.+.+...+.+.
T Consensus 408 ~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p---~~~l~~v~~~l~~~l~~~l~~~~~~~~~~ 484 (1204)
T 3a6p_A 408 MGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP---KTSFQMAGEWLKYQLSTFLDAGSVNSCSA 484 (1204)
T ss_dssp CCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTCC-----------
T ss_pred hcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 211 111 124444444443332211 111344445554443321
Q ss_pred ------------C--HHHHHHHHHHHHHHHh----hc-CcCcc-cchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 009182 209 ------------D--EFTRLTAITWINEFVK----LG-GDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (541)
Q Consensus 209 ------------~--~~vr~~al~wL~~l~~----~~-~~~l~-p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i 268 (541)
+ +....+....+..+.+ .. .+.+. ...|++++.++. +..++|.+|..+..+.+.+.+.+
T Consensus 485 ~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~-~~~~~p~l~~~~i~~l~~l~~~~ 563 (1204)
T 3a6p_A 485 VGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN-FDTKDPLILSCVLTNVSALFPFV 563 (1204)
T ss_dssp ------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHGGGG
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHHHHH
Confidence 1 1112222222222222 12 11111 123444444332 13468889999999988887766
Q ss_pred cCCCCCCChHhHHHHHHHhcCC------------CCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC---
Q 009182 269 ADPADGFDVGPILSIATRQLSS------------EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS--- 333 (541)
Q Consensus 269 ~~~~~~~~l~~il~~L~~~L~~------------~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~D~~--- 333 (541)
...+ --++.+++.+...+.+ .+-..|.+|...+..+...+++.+.||++.+...+-..++...
T Consensus 564 ~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~ 641 (1204)
T 3a6p_A 564 TYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLT 641 (1204)
T ss_dssp GTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSC
T ss_pred hcCc--hHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCccccc
Confidence 5432 1246677766655533 2336899999999999999999999999999998877665332
Q ss_pred HHHHHHHHHHHHHHhc-------chhhHHHHHHHHHHhccc
Q 009182 334 DEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRV 367 (541)
Q Consensus 334 ~~V~~~~~~~L~~i~~-------~~~~f~~~m~~LL~~~~~ 367 (541)
..=+..-.+++.-++. ...|++.++.-+.+...+
T Consensus 642 ~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 642 QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 3223334455555552 235677788877777664
No 101
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.80 E-value=0.032 Score=60.53 Aligned_cols=231 Identities=15% Similarity=0.118 Sum_probs=138.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhh---hchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML---GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~---~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~ 190 (541)
.-|+.|...+...+.++|.++++.+..+....+.... -.-|.-++.|..+|+|+...+|.++...|..+.+ .+.
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~---~n~ 198 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR---SNG 198 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT---TCH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc---CCH
Confidence 3489999999999999999999999999877665333 3345678888899999999999999888777763 211
Q ss_pred C--------CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC--cCc-c--cchhhHHHHHhhhcCCCChh-H--H
Q 009182 191 S--------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG--DQL-V--PYYADILGAILPCISDKEEK-I--R 254 (541)
Q Consensus 191 ~--------~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~--~~l-~--p~l~~llp~ll~~l~d~~~~-i--R 254 (541)
+ ..++.++.++-..-......+-.-|+..+..+.+..+ +.+ . .++|++.|.+ ...+++ . -
T Consensus 199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL----~~~~~~~~W~~ 274 (651)
T 3grl_A 199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF----EVGDENSGWSA 274 (651)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG----CCCSCSSCCCH
T ss_pred HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh----CCCccccccHH
Confidence 1 1133444444332222234666667777777765532 111 1 2344444332 221111 0 0
Q ss_pred HHHHHHH--HHHHHhhcCCCCC----------CChHhHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhChHHHhhh---
Q 009182 255 VVARETN--EELRAIKADPADG----------FDVGPILSIATRQLSSE--WEATRIEALHWISTLLNRHRTEVLHF--- 317 (541)
Q Consensus 255 ~~A~~~~--~~L~~~i~~~~~~----------~~l~~il~~L~~~L~~~--~~~~R~aal~wL~~L~~~~~~~i~~~--- 317 (541)
+...+.. -.+.++.-..++. +--..+++.+.+.+... ...+|..|+..++.+..+.+..-..+
T Consensus 275 Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~ 354 (651)
T 3grl_A 275 QKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASV 354 (651)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 0111111 1222332222111 00124667777777654 56789999999999998887532211
Q ss_pred -------hHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcch
Q 009182 318 -------LNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDL 351 (541)
Q Consensus 318 -------l~~l~p~Ll~~L~D~~-~~V~~~~~~~L~~i~~~~ 351 (541)
.+.++..++..+++.. ..+|..++.+++.+..+.
T Consensus 355 ~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 355 NAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp EESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence 2345555666676654 678889999999998443
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.78 E-value=0.0011 Score=62.95 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=102.7
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHH-hhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~k-l~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
-.+++++......+|+...||..|+..+... . ...++++.+.. +.+|+.-.||..+ .+++..++..
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~--- 135 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI--- 135 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc---
Confidence 3677888888899999999999999876644 1 12567888877 7789999999998 7777776522
Q ss_pred cchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 009182 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll 183 (541)
..+..+|.+.+-..|+|+.||..++.........+ .+......+++-|-.+..|++.-||++....|.++-
T Consensus 136 ----~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 136 ----EYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp ----CTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 12235788899999999999999998875444432 222333445566667888999999999999988876
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.55 E-value=0.00016 Score=83.45 Aligned_cols=319 Identities=14% Similarity=0.126 Sum_probs=176.7
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhch----hhhhHHHHHHHHHHHhhc-CCCHHHH-HHHHHHHHHH
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFIIFFNQIFDALCKLSA-DSDANVQ-SAAHLLDRLV 100 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~----~~~~~~~~i~~~L~kl~~-D~d~~VR-~~A~~L~~l~ 100 (541)
...++.+.+.+-....|++..-..+|||.+.-+....+. .....|+.+.|.|.+.++ +-.++.. .....+.-++
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~ 582 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLP 582 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 355777888888888999999999999988877654331 234678889999999888 4555332 2223222222
Q ss_pred hHhhcccchhcHhhhHHHHHHHh---c---CC---CH---HHHHHHHHHH-HHhhcCCCchhhhchHHHHHHHHHHcCCC
Q 009182 101 KDIVTESDQFSIEEFIPLLRERM---N---VL---NP---YVRQFLVGWI-TVLDSVPDIDMLGFLPDFLDGLFNMLSDS 167 (541)
Q Consensus 101 kdi~~e~~~~~l~~~iP~L~e~l---~---d~---~~---~vR~~a~~~l-~~L~~~~~~~l~~~lp~~L~~L~~lL~D~ 167 (541)
. ..+ ... .+.|.+.+ . +. ++ ..|...+..+ ..+.-..+ + ...++..++ +..+
T Consensus 583 ~----~~D---prR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~-~----~~~~l~~~~--l~h~ 647 (997)
T 1vsy_5 583 A----VVD---LRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAP-D----VGKLFDELV--FDHP 647 (997)
T ss_dssp H----HSC---GGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSC-C----CHHHHHHCC--SCCS
T ss_pred c----CCC---hhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccc-c----HHHHHHHHH--hCCC
Confidence 1 111 122 33344433 1 11 11 1233333322 22221111 1 334444444 7778
Q ss_pred CHHHHHHHHHHHHHHHHHhc---------------CC----CC------CChHHHHHHHHHhcC---------CC-----
Q 009182 168 SHEIRQQADSALWEFLQEIK---------------NS----PS------VDYGRMAEILVQRAA---------SP----- 208 (541)
Q Consensus 168 ~~eVR~~a~~~L~~ll~~i~---------------~~----~~------~~~~~ii~~Ll~~~~---------~~----- 208 (541)
...||+.....|..+...-- .. .- ..+...+..+.+... .+
T Consensus 648 y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~ 727 (997)
T 1vsy_5 648 YDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIK 727 (997)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTT
T ss_pred hHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccch
Confidence 89999998888866654321 00 00 001111222222222 11
Q ss_pred CHH--HHHHHHHHHHHHHhhc-CcCcccchhh-HHHHHhhhcCCCCh-hHHHH-HHHHHHHHHHhhcCCCCC-CChHhHH
Q 009182 209 DEF--TRLTAITWINEFVKLG-GDQLVPYYAD-ILGAILPCISDKEE-KIRVV-ARETNEELRAIKADPADG-FDVGPIL 281 (541)
Q Consensus 209 ~~~--vr~~al~wL~~l~~~~-~~~l~p~l~~-llp~ll~~l~d~~~-~iR~~-A~~~~~~L~~~i~~~~~~-~~l~~il 281 (541)
+.. ...+.+.|+.....-+ ...+.||++. ++|.++.+...++. ++... |..+. ..+...... -..+.++
T Consensus 728 s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l----~~ls~~~~~~~~~~~~l 803 (997)
T 1vsy_5 728 TDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLY----AGLGYMPIRKNHVAAIV 803 (997)
T ss_dssp SHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHH----HHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHH----HHHhcCCCCHHHHHHHH
Confidence 122 2457788998664433 2347788888 89999888766543 43332 22222 222211000 0124456
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhhChHHHh-hhhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcch---hhHH
Q 009182 282 SIATRQLS-SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDL---QHFR 355 (541)
Q Consensus 282 ~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~~i~-~~l~~l~p~Ll~~L~D~~-~~V~~~~~~~L~~i~~~~---~~f~ 355 (541)
..+.+... +.+| +|.+++..+..++-.----+. ..-..+...+++.|.|+. .|||..|..+|+.+..+. ..-+
T Consensus 804 ~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~ 882 (997)
T 1vsy_5 804 DYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLL 882 (997)
T ss_dssp HHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHH
T ss_pred HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHH
Confidence 66655555 5789 999999987655442111111 112467888999999999 999999999999997554 2234
Q ss_pred HHHHHHHHhc
Q 009182 356 QLVVFLVHNF 365 (541)
Q Consensus 356 ~~m~~LL~~~ 365 (541)
.++..+-+.+
T Consensus 883 ~li~~f~~~~ 892 (997)
T 1vsy_5 883 SLIERFAKGL 892 (997)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.41 E-value=0.0074 Score=57.30 Aligned_cols=137 Identities=17% Similarity=0.088 Sum_probs=101.8
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN-MLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~-lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
+.+.+++....+.+++...||..++..++.+ + ..+..++.+-. +..|.+=.||..++.+++.++...+
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~-- 136 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE-- 136 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC--
Confidence 4677788888999998899999999988877 2 23566776666 5678889999999999998886332
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
.+..++.+..-++|+++.||..|.+...-.+... .+......++|.+-+...|++.-||.+-...+..+
T Consensus 137 ----pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 137 ----YKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDI 205 (240)
T ss_dssp ----TTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 2346778888899999999999887654333321 22233457888888888889999988766666555
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.03 E-value=0.0052 Score=58.84 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=100.7
Q ss_pred cchhHHHHhhcCCCCH--HHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhH--
Q 009182 31 QQIVPPVLNSFSDQDS--RVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD-- 102 (541)
Q Consensus 31 ~~ii~~vl~~l~D~d~--~VR~~A~eaL~~i~k~~---~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kd-- 102 (541)
.--+|++.+.++.+|+ .++..|+.++.+++..- +..+.. ...+|.|.+++..++++++..| .+|..+..+
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~--~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ--LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 3456889999987777 99989989999988542 122221 1457999999999999999999 888777541
Q ss_pred ----hhcccchhcHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcC-------C----
Q 009182 103 ----IVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-------D---- 166 (541)
Q Consensus 103 ----i~~e~~~~~l~~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~-------D---- 166 (541)
.+.+.+ -||.|.+.++ ..++.+|+.++..+..++....... .....-++.|.+++. |
T Consensus 85 ~nk~~I~~~G------aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 85 DNKLEVAELN------GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp HHHHHHHHTT------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCC
T ss_pred HHHHHHHHcC------CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccc
Confidence 122223 3999999997 4789999999999999987654221 112233455554332 1
Q ss_pred -----CCHHHHHHHHHHHHHHH
Q 009182 167 -----SSHEIRQQADSALWEFL 183 (541)
Q Consensus 167 -----~~~eVR~~a~~~L~~ll 183 (541)
.+.+|+..|..+|..+.
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLs 179 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMS 179 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHh
Confidence 25689999988888774
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.02 E-value=0.0033 Score=60.21 Aligned_cols=188 Identities=14% Similarity=0.058 Sum_probs=119.6
Q ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHHHHHhhcCc--CcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCC
Q 009182 196 RMAEILVQRAASPDE--FTRLTAITWINEFVKLGGD--QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (541)
Q Consensus 196 ~ii~~Ll~~~~~~~~--~vr~~al~wL~~l~~~~~~--~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~ 271 (541)
--+|.+++.++++++ .++..|..++..++.-.+. ..+ .-...+|.++..|..+++++++.|..+...+.. .++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I-~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~--~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRV-NQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF--EDN 84 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH-HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCH
Confidence 346777888888877 8888888888877643321 111 123567999999998899999988877776631 110
Q ss_pred CCC--CChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC-------C---------C
Q 009182 272 ADG--FDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-------D---------P 332 (541)
Q Consensus 272 ~~~--~~l~~il~~L~~~L~-~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~L~-------D---------~ 332 (541)
.+. +--...+|.|.+.|. +.+..+|+.|.-.|..|........ .....-+|.|...+. | .
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccc
Confidence 000 001246788888886 5688899998888888876543322 122345677766542 1 2
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHH-------HHHHHHHhccc-------cchhhhhhHHHHHHHhhccCC
Q 009182 333 SDEVVLLVLEVHACIAKDLQHFRQ-------LVVFLVHNFRV-------DNSLLEKRGALIIRRLCVLLD 388 (541)
Q Consensus 333 ~~~V~~~~~~~L~~i~~~~~~f~~-------~m~~LL~~~~~-------~~~ll~~r~~~iir~Lc~~l~ 388 (541)
+++|+..+..+|..++..++..++ .++.|+..++. +.+.+| -+--++|+||..+.
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~E-n~v~~L~nLs~~~~ 232 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATE-NCVCILHNLSYQLE 232 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHH-HHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHH-HHHHHHHHHHhhhc
Confidence 568999999999999853322222 44555555543 234333 34668888887653
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.93 E-value=0.00095 Score=74.36 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=85.8
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHH-HHHHHhhcCCCHHHHHHH-HHHHHHHhHhhccc-chh
Q 009182 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIF-DALCKLSADSDANVQSAA-HLLDRLVKDIVTES-DQF 110 (541)
Q Consensus 34 i~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~-~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~-~~~ 110 (541)
+.|++..++.+|++.|..||.++.+++......-.-.-..++ +.+.+++.|++.+||.+| .+|..++.+-..+. +..
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 456778899999999999999999998643221111112344 456678999999999999 88888764321110 000
Q ss_pred cHhhhHHHHHHHhcC--------------CCH-------HHHHHHHHHHHHhhcCCCchhhhc-hHHHHHHHHHHcC--C
Q 009182 111 SIEEFIPLLRERMNV--------------LNP-------YVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLS--D 166 (541)
Q Consensus 111 ~l~~~iP~L~e~l~d--------------~~~-------~vR~~a~~~l~~L~~~~~~~l~~~-lp~~L~~L~~lL~--D 166 (541)
.-..++|.|...++. ... .+-..++..+..++...+..+... --..++.++..+. |
T Consensus 116 ~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 116 YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcC
Confidence 011235555444421 011 122334555555554433222111 0133444444443 2
Q ss_pred -CCHHHHHHHHHHHHHHHH
Q 009182 167 -SSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 167 -~~~eVR~~a~~~L~~ll~ 184 (541)
...+++..|.+||..+.+
T Consensus 196 ~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 196 IAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHhc
Confidence 357899999999887754
No 108
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.79 E-value=0.41 Score=46.17 Aligned_cols=196 Identities=14% Similarity=0.085 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCC
Q 009182 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208 (541)
Q Consensus 129 ~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~ 208 (541)
..|...+.-...+.-..+. .++|+|+++++.+..|++.+||+.....+.+.+..= .......++.+...+++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp---~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~ 102 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCA---ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDN 102 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTG---GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHccCH---hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCC
Confidence 3444444444444333222 478999999999999999999998877776665321 123466777777777777
Q ss_pred CHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc
Q 009182 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 288 (541)
Q Consensus 209 ~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L 288 (541)
++.|...++..... +-|.++..+..+. ++-+...+++..+ ..+-..+...+
T Consensus 103 d~~V~K~~I~~~~~---------------iY~~~l~~i~~~~-~~~~~~~~~W~~m-------------~~lK~~Il~~~ 153 (257)
T 3gs3_A 103 SAQVIKRVIQACGS---------------IYKNGLQYLCSLM-EPGDSAEQAWNIL-------------SLIKAQILDMI 153 (257)
T ss_dssp CHHHHHHHHHHHHH---------------HHHHHHHHHTTSS-SCCHHHHHHHHHH-------------HHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHH---------------HHHHHHHHHhcCC-CCcchHHHHHHHH-------------HHHHHHHHHHH
Confidence 77776665543321 2233333333211 1101112223222 12223334445
Q ss_pred CCCCHHHHHHHHHHHHHHHhhC---------------------------hHHHhhhhHHHHHHHHHhcCCC--CHHHHHH
Q 009182 289 SSEWEATRIEALHWISTLLNRH---------------------------RTEVLHFLNDIFDTLLKALSDP--SDEVVLL 339 (541)
Q Consensus 289 ~~~~~~~R~aal~wL~~L~~~~---------------------------~~~i~~~l~~l~p~Ll~~L~D~--~~~V~~~ 339 (541)
.+.+..+|.+|++.+..+.... +..+..--..++..|++.+.++ ++-....
T Consensus 154 ~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a 233 (257)
T 3gs3_A 154 DNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIA 233 (257)
T ss_dssp GSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHH
Confidence 6677888888888776555321 0222222345666677766655 4434556
Q ss_pred HHHHHHHHhc-chhhHHHHHHH
Q 009182 340 VLEVHACIAK-DLQHFRQLVVF 360 (541)
Q Consensus 340 ~~~~L~~i~~-~~~~f~~~m~~ 360 (541)
++..|+.|++ .+++...+++.
T Consensus 234 ~lnsL~~Iak~RP~~~~rIl~a 255 (257)
T 3gs3_A 234 CTSSLCTIAKMRPIFMGAVVEA 255 (257)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHh
Confidence 7788888884 45555555554
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.77 E-value=0.67 Score=48.34 Aligned_cols=270 Identities=14% Similarity=0.127 Sum_probs=151.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 009182 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (541)
Q Consensus 73 ~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~ 151 (541)
+-+..+..+..-. +.+|.-| ..+.+..+....-. +.-+..+..+..|++..||..++..+..++.- .
T Consensus 29 ~~y~~Il~~~kg~-~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~ 96 (507)
T 3u0r_A 29 DAYQVILDGVKGG-TKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG------E 96 (507)
T ss_dssp HHHHHHHHGGGSC-HHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------T
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------h
Confidence 3345555555544 5556555 88888888655421 22277778888999999999998888877744 6
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hcCcC
Q 009182 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK-LGGDQ 230 (541)
Q Consensus 152 ~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~-~~~~~ 230 (541)
+++.+-+.|.++|.-.++..+..+.++|..+++ .|-..-+..+..++..+++.+|..++..|.+=.. +.++.
T Consensus 97 ~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-------~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~ 169 (507)
T 3u0r_A 97 NLPRVADILTQLLQTDDSAEFNLVNNALLSIFK-------MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEV 169 (507)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTT
T ss_pred hhhhHHHHHHHHHhccchHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhh
Confidence 689999999999998788888888888888874 3444555556666656789999999988875433 33333
Q ss_pred cccchh-hHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC------CCCHHHHHHHHHH
Q 009182 231 LVPYYA-DILGAILPCISDK-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS------SEWEATRIEALHW 302 (541)
Q Consensus 231 l~p~l~-~llp~ll~~l~d~-~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~------~~~~~~R~aal~w 302 (541)
+-.-.. -+...+.+.|.|- ..|.. ...+.++.+ +..+. .-...++++.+.++.. ..+.+.=..-+.+
T Consensus 170 l~~E~E~~i~~~ikK~L~DVT~~EF~-L~m~lL~~l-kl~~t---~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 170 LTKEVEELILTESKKVLEDVTGEEFV-LFMKILSGL-KSLQT---VSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCHHHHH-HHHHHHHTS-GGGSS---HHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHhc-ccccC---chHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 322222 2334555566552 22321 111111111 11110 0113466777766631 1233322222222
Q ss_pred HHHHHhhChHHH--hhhhHHHHHHHHHhcCC---C--CHHHHHHHHHHHHHHhc-------chhhHHHHHHHHHHhcc
Q 009182 303 ISTLLNRHRTEV--LHFLNDIFDTLLKALSD---P--SDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFR 366 (541)
Q Consensus 303 L~~L~~~~~~~i--~~~l~~l~p~Ll~~L~D---~--~~~V~~~~~~~L~~i~~-------~~~~f~~~m~~LL~~~~ 366 (541)
+.+-.-....+. ..++.-+..-+++.+++ + .++.+...++++++++. ..+.+..+...|++.+.
T Consensus 245 ~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP 322 (507)
T 3u0r_A 245 TRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322 (507)
T ss_dssp HHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCC
Confidence 222221111111 11222222333334443 2 22367788899999983 13466777777777664
No 110
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.74 E-value=0.0064 Score=70.15 Aligned_cols=195 Identities=12% Similarity=0.106 Sum_probs=125.5
Q ss_pred hhhHHHH-HHHHHHHhhcCCCH-HHHHH-HHHHHHHHhHhhcccchhcHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhh
Q 009182 67 FIIFFNQ-IFDALCKLSADSDA-NVQSA-AHLLDRLVKDIVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLD 142 (541)
Q Consensus 67 ~~~~~~~-i~~~L~kl~~D~d~-~VR~~-A~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~ 142 (541)
..++++. ++|.++++..+.|. +..+. |..+-..+..+.- ....++.++..+.+..+ +.++ +|..++.-+..+.
T Consensus 753 l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~--~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~ 829 (997)
T 1vsy_5 753 LVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI--RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFL 829 (997)
T ss_dssp HHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC--CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHH
Confidence 3466666 77778777766654 43443 3222122211111 12234555656655555 5788 9999988876553
Q ss_pred c--C--CCchhhhchHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC--CC------
Q 009182 143 S--V--PDIDMLGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS--PD------ 209 (541)
Q Consensus 143 ~--~--~~~~l~~~lp~~L~~L~~lL~D~~-~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~--~~------ 209 (541)
- . ...+ --+.++..++++|.|+. .|||+.|..+|..+++..+ +.....+++..+.+.+.. ..
T Consensus 830 f~n~f~l~~~---~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~--~~~~~~~li~~f~~~~~~~~~~~~~~~~ 904 (997)
T 1vsy_5 830 SAELLQLTEE---EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWK--EEQPLLSLIERFAKGLDVNKYTSKERQK 904 (997)
T ss_dssp HHHTTTSCTT---HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCC--SHHHHHHHHHHHTTSSTTTSSCHHHHHH
T ss_pred HHHHHHcCHH---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC--chhhHHHHHHHHHHHHhhcccccccccc
Confidence 2 1 1111 12577888889999999 9999999999999986431 001133455544444422 01
Q ss_pred ----HHHHHHHHHHHHHHHhhcCcCc--ccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcC
Q 009182 210 ----EFTRLTAITWINEFVKLGGDQL--VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 210 ----~~vr~~al~wL~~l~~~~~~~l--~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~ 270 (541)
...|.+++-+++.++...|-++ -+|+|+++..+-....++.| |+.++.++.+.+.+.-.+
T Consensus 905 ~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 905 LSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred cchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 1356778889999998888776 57999999888888888665 999999999998776544
No 111
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.49 E-value=0.12 Score=56.00 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=116.1
Q ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC--ChhHHHHHHHHHHHHHHhhcC
Q 009182 194 YGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKAD 270 (541)
Q Consensus 194 ~~~ii~~Ll~~~~~~-~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~--~~~iR~~A~~~~~~L~~~i~~ 270 (541)
-..-|+.|..+.++. -.+=|+.|+..+..+++-.+..+. ..=+|.++..|.+. +.++-..+ +..|...+..
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~---LetL~~l~~~ 92 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYA---LDTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHH---HHHHHHHHCC
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHH---HHHHHHHhCC
Confidence 455666666665544 455689999999988876665543 44466677766653 34443333 3344332322
Q ss_pred CCC----------CCCh-----------HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh---hHHHHHHHH
Q 009182 271 PAD----------GFDV-----------GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF---LNDIFDTLL 326 (541)
Q Consensus 271 ~~~----------~~~l-----------~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~---l~~l~p~Ll 326 (541)
+++ .-++ +.-++.|...|.++++.+|..+++.|..+....|+..... .+.-+|.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 110 0011 3457788999999999999999999999999999865543 336789999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcchhh------HHHHHHHHHHhccccch
Q 009182 327 KALSDPSDEVVLLVLEVHACIAKDLQH------FRQLVVFLVHNFRVDNS 370 (541)
Q Consensus 327 ~~L~D~~~~V~~~~~~~L~~i~~~~~~------f~~~m~~LL~~~~~~~~ 370 (541)
..|+|+.+-+|..++-+|..++.+... |+...+.|.+.+..+..
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC
Confidence 999999999999999999999954433 44456666676665543
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.32 E-value=0.71 Score=48.14 Aligned_cols=264 Identities=11% Similarity=0.102 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHh
Q 009182 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERM 123 (541)
Q Consensus 45 d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l 123 (541)
+.+....|+.-+....+.+. ..-++.++++..++.|.|..||..| ..|..+|++ ..+.++...|.+++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-------~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-------ENLPRVADILTQLL 109 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-------TCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-------hhhhhHHHHHHHHH
Confidence 46666666655554443221 2225789999999999999999999 888888875 23889999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC-CCChHH-HHHHH
Q 009182 124 NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGR-MAEIL 201 (541)
Q Consensus 124 ~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~-~~~~~~-ii~~L 201 (541)
+.+++..+..+=.++..+...-+. .-+.++|.-+..++..+|+.+.+.+..=+..++... ..+.+. ++..+
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~i 182 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTES 182 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHH
Confidence 999988888887777766665443 223344433333568899888777665555444321 112333 33344
Q ss_pred HHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC------CChhHHHHHHHHHHHHHHhhcCCCCC
Q 009182 202 VQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD------KEEKIRVVARETNEELRAIKADPADG 274 (541)
Q Consensus 202 l~~~~~~~~-~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d------~~~~iR~~A~~~~~~L~~~i~~~~~~ 274 (541)
.+.+++-.. +..+ .+..++. .++++. .+...++++.+.....- ++++.-+.-..|...-+..+...
T Consensus 183 kK~L~DVT~~EF~L-~m~lL~~-lkl~~t--~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~--- 255 (507)
T 3u0r_A 183 KKVLEDVTGEEFVL-FMKILSG-LKSLQT--VSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKN--- 255 (507)
T ss_dssp HHHTTSCCHHHHHH-HHHHHHT-SGGGSS--HHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTT---
T ss_pred HHHhccccHHHHHH-HHHHHHh-cccccC--chHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccC---
Confidence 444544432 2221 1122211 112222 13345666666665321 23333222233333222223221
Q ss_pred CChHhHHHHHHHhc----CC-----CCHHHHHHHHHHHHHHHhhCh--HHHhhhhHHHHHHHHHhcCCCC
Q 009182 275 FDVGPILSIATRQL----SS-----EWEATRIEALHWISTLLNRHR--TEVLHFLNDIFDTLLKALSDPS 333 (541)
Q Consensus 275 ~~l~~il~~L~~~L----~~-----~~~~~R~aal~wL~~L~~~~~--~~i~~~l~~l~p~Ll~~L~D~~ 333 (541)
.+-..++..+.+++ .. +....|..-|+.+-.+...++ +.....++.++..|++.+--+.
T Consensus 256 v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p 325 (507)
T 3u0r_A 256 VHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPP 325 (507)
T ss_dssp BCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC
T ss_pred CChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCc
Confidence 12223343333332 11 112267777777777777776 4455567777777777665443
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.13 E-value=0.2 Score=46.20 Aligned_cols=142 Identities=12% Similarity=0.190 Sum_probs=100.0
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcC------CCHHHHHHHHH
Q 009182 64 RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV------LNPYVRQFLVG 136 (541)
Q Consensus 64 ~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d------~~~~vR~~a~~ 136 (541)
+.|...||.++-.++.. ..|++| +. +-++ ..+..++|.+..++.+ .|...=..++.
T Consensus 6 S~Elq~yf~~It~a~~~-------~~r~~aL~s-------L~~D---~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~ 68 (196)
T 4atg_A 6 PKELQLYFDKILSMIKS-------DMKDIAIEC-------LEKE---SGLQQLVPYFIQHISELILKSFKEAEVLKTCIA 68 (196)
T ss_dssp CHHHHHHHHHHHHHHTS-------TTHHHHHHH-------HHHC---SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-------HHHHHHHHH-------HhcC---CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 34555677777666643 346666 33 2223 3466667777766642 35566666788
Q ss_pred HHHHhhcCCCchhhhchHHHHHHHHHHcCC--C-CHHHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHhcCCC--CH
Q 009182 137 WITVLDSVPDIDMLGFLPDFLDGLFNMLSD--S-SHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASP--DE 210 (541)
Q Consensus 137 ~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D--~-~~eVR~~a~~~L~~ll~~i~~~~~~~-~~~ii~~Ll~~~~~~--~~ 210 (541)
.+..+...+...+-+|+..++|.+..++-. - ..++|+.|.+.++.+++.++... +. -+.++..+.+...|+ ..
T Consensus 69 ~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~~l 147 (196)
T 4atg_A 69 LYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNRSE 147 (196)
T ss_dssp HHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCCCh
Confidence 888888888889999999999999976622 1 23899999999999999987532 33 477888888888765 45
Q ss_pred HHHHHHHHHHHHH
Q 009182 211 FTRLTAITWINEF 223 (541)
Q Consensus 211 ~vr~~al~wL~~l 223 (541)
.....|+.++..+
T Consensus 148 ~t~YGAi~GL~~l 160 (196)
T 4atg_A 148 DSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6678888887655
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.12 E-value=1.4 Score=44.85 Aligned_cols=236 Identities=15% Similarity=0.128 Sum_probs=135.8
Q ss_pred hchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 009182 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (541)
Q Consensus 151 ~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~ 230 (541)
..+|+|++.++.+-.|++.+||+.+...+.+.+.. . ......+++.|...+++.++.|...++.....+
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl------- 127 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDENVNVVKKAILTMTQL------- 127 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-------
Confidence 46788888888899999999998887777666532 1 112566777777777777777766655433321
Q ss_pred cccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC
Q 009182 231 LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (541)
Q Consensus 231 l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~ 310 (541)
+|.++..+.+. ....+ ...+++..+ ..+-..+...+.+.+..+|.+|++.+..+....
T Consensus 128 ----Ypl~f~~i~~~--~~~~~---~~e~~W~~m-------------~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 128 ----YKVALQWMVKS--RVISE---LQEACWDMV-------------SAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp ----HHHHHHHHHHC---CCCH---HHHHHHHHH-------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHhcC--CCcch---hHHHHHHHH-------------HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 22233322221 11111 112223222 122233344456677888888888776554321
Q ss_pred h------------------------------HHHhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHh-cchhhHHHH
Q 009182 311 R------------------------------TEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIA-KDLQHFRQL 357 (541)
Q Consensus 311 ~------------------------------~~i~~~l~~l~p~Ll~~L~D~--~~~V~~~~~~~L~~i~-~~~~~f~~~ 357 (541)
. ..+..--..++..|++.+.++ ++-....++..|+.|+ ..+.|...+
T Consensus 186 S~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rI 265 (386)
T 3o2t_A 186 SPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEV 265 (386)
T ss_dssp SCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred CCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 1 112222456788888888865 4545556778888888 467778888
Q ss_pred HHHHHHhccccchhhh-hhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHH
Q 009182 358 VVFLVHNFRVDNSLLE-KRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSE 428 (541)
Q Consensus 358 m~~LL~~~~~~~~ll~-~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~ 428 (541)
++.++..-.+-..-+. .-...+- ..+.-.|..+|....-.+|...+.+.|...-.+-.|..+
T Consensus 266 l~aL~~l~~n~p~t~sk~qvkSv~---------KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~~Ei~~ 328 (386)
T 3o2t_A 266 IQAYETLHANLPPTLAKSQVSSVR---------KNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIAR 328 (386)
T ss_dssp HHHHHHHHHCC----CGGGHHHHH---------HHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhhcCCCCccHHHHHHHHHH---------HHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccHHHHHH
Confidence 8888753322121110 0011111 244556666776655568999999999886666666643
No 115
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.06 E-value=0.18 Score=50.28 Aligned_cols=224 Identities=13% Similarity=0.168 Sum_probs=136.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC---C---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 009182 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV---D---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (541)
Q Consensus 155 ~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~---~---~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~ 228 (541)
+++..|...+..-+-|.|+.+......+++.=.....+ + -+.++..++....+++ +...+-..+.+.+..-.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d--iAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE--IALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT--THHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch--hHhHHHHHHHHHHHhHH
Confidence 45556666777788899999988888777521111111 1 2567778887776544 55555555666544211
Q ss_pred --cCcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC------CCChHhHHHHHHHhcCCCCHHHHHHHH
Q 009182 229 --DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD------GFDVGPILSIATRQLSSEWEATRIEAL 300 (541)
Q Consensus 229 --~~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~------~~~l~~il~~L~~~L~~~~~~~R~aal 300 (541)
.-++ + +..+--+++.+..++.+|-.-|-.+...++ ..... ..+++.+.......+.++++.||..++
T Consensus 156 la~~iL-~-~~~f~~fF~yv~~~~FdiasDAf~TfkelL---t~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 156 LAKIIL-W-SEQFYDFFRYVEMSTFDIASDAFATFKDLL---TRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HHHHHH-H-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHH---HSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHh-c-cHHHHHHHHHhcCCCchHHHHHHHHHHHHH---hccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 0000 0 112223445666677776544444444442 21100 125788888888888999999999999
Q ss_pred HHHHHHHhhCh--HHHhhh--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcchh-------hH---HHHHHHHHHhcc
Q 009182 301 HWISTLLNRHR--TEVLHF--LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ-------HF---RQLVVFLVHNFR 366 (541)
Q Consensus 301 ~wL~~L~~~~~--~~i~~~--l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~~~~-------~f---~~~m~~LL~~~~ 366 (541)
+.||.+...-. .-|..| .+.-+..++..|+|++..++..+.-++.-+..++. .+ +.-+-..+.-|+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~ 310 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 310 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 99998877632 334444 34567899999999999999999998888773221 01 112223334443
Q ss_pred c----cchhhhhhHHHHHHHhhcc
Q 009182 367 V----DNSLLEKRGALIIRRLCVL 386 (541)
Q Consensus 367 ~----~~~ll~~r~~~iir~Lc~~ 386 (541)
+ |+...+++ +++|+++..+
T Consensus 311 ~d~~eDeqF~dEK-~~lI~~I~~L 333 (341)
T 1upk_A 311 NDRTEDEQFNDEK-TYLVKQIRDL 333 (341)
T ss_dssp TTC-CCSHHHHHH-HHHHHHHHTC
T ss_pred CCCcchhhHHHHH-HHHHHHHHhC
Confidence 3 34555555 7888888554
No 116
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.98 E-value=0.1 Score=48.11 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=100.4
Q ss_pred chhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC------CCHHHHHHHHHHH
Q 009182 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS------PDEFTRLTAITWI 220 (541)
Q Consensus 147 ~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~------~~~~vr~~al~wL 220 (541)
.++..|+.++.+ .+.+ +.|++| +..+-. ++.+++++|+++....+ .|...-...+...
T Consensus 7 ~Elq~yf~~It~----a~~~---~~r~~a---L~sL~~------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 7 KELQLYFDKILS----MIKS---DMKDIA---IECLEK------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHH----HHTS---TTHHHH---HHHHHH------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHh---HHHHHH---HHHHhc------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 345556666555 3333 446665 444432 46678888888765432 2444333445556
Q ss_pred HHHHhhcCcCcccchhhHHHHHhhhcCCC---ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC--CCHHH
Q 009182 221 NEFVKLGGDQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEAT 295 (541)
Q Consensus 221 ~~l~~~~~~~l~p~l~~llp~ll~~l~d~---~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~--~~~~~ 295 (541)
..+.+-..-.+-||+.+++|.++.|+-.. ...+|+-|.+..+.+.+..++..... .+.+...+.+.+.+ .+..+
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t 149 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTL-APRVLKTLKGVWMDPNRSEDS 149 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTH-HHHHHHHHHHHHTCTTSCHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchH-HHHHHHHHHHHHcCCCCChHH
Confidence 66666666778899999999999998653 23799999999999988776532211 25678888888865 45778
Q ss_pred HHHHHHHHHHHHhhChHHH
Q 009182 296 RIEALHWISTLLNRHRTEV 314 (541)
Q Consensus 296 R~aal~wL~~L~~~~~~~i 314 (541)
+..|+..+..++...-..+
T Consensus 150 ~YGAi~GL~~lG~~~vr~~ 168 (196)
T 4atg_A 150 QYGALYCLSILSKNVVNTV 168 (196)
T ss_dssp HHHHHHHHHHHCHHHHHTH
T ss_pred HHHHHHHHHHhHHHHHHHh
Confidence 9999998888877554443
No 117
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.83 E-value=0.11 Score=57.70 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=51.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCch-hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~-l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~ 185 (541)
.++|.+ +.+++.++..|..++.++.+++.-+... +..+-..+.+-+-.++.|++.+||.+|..+|+.+...
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 456655 5689999999999999999998643321 2222222333345689999999999999999888754
No 118
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=95.18 E-value=1 Score=44.69 Aligned_cols=194 Identities=11% Similarity=0.152 Sum_probs=112.0
Q ss_pred chhhHHHHHhhhcCCCChhHHH-----HHHHHHHHHHHhhcCCCCCCChHhHHHHH----HHhcC---CCCHHHHHHHHH
Q 009182 234 YYADILGAILPCISDKEEKIRV-----VARETNEELRAIKADPADGFDVGPILSIA----TRQLS---SEWEATRIEALH 301 (541)
Q Consensus 234 ~l~~llp~ll~~l~d~~~~iR~-----~A~~~~~~L~~~i~~~~~~~~l~~il~~L----~~~L~---~~~~~~R~aal~ 301 (541)
++|.++..++.--..+.|+.|+ .......++.+.+.. ..+.+++.+ .++.. ++-.+.|.+=..
T Consensus 70 ~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~-----~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~ 144 (321)
T 1w9c_A 70 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA-----EIPQIFDAVFECTLNMINKDFEEYPEHRTNFFL 144 (321)
T ss_dssp THHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGG-----GHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHhcccccChHHHHHHHH
Confidence 4566665555443444444443 333333344333221 234444433 33443 355678999999
Q ss_pred HHHHHHhhChHHHhhh----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----cc--------hhhHHHHHHHHHHhc
Q 009182 302 WISTLLNRHRTEVLHF----LNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KD--------LQHFRQLVVFLVHNF 365 (541)
Q Consensus 302 wL~~L~~~~~~~i~~~----l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~----~~--------~~~f~~~m~~LL~~~ 365 (541)
++.++...|.+.+... ...++..++-..+++..+|-...+..+..+- ++ ..||-.++..++..+
T Consensus 145 LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~Vl 224 (321)
T 1w9c_A 145 LLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVV 224 (321)
T ss_dssp HHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877654 4455667777789999999988887665544 21 234555555555544
Q ss_pred -cccchhhhhhHHHHHHHhhccC----------------ChhhHHHHHHHHhccc-CCh--HHHHHHHHHhHHhhcCcHh
Q 009182 366 -RVDNSLLEKRGALIIRRLCVLL----------------DAERVYRELSTILEGE-ADL--DFACTMVQALNLILLTSSE 425 (541)
Q Consensus 366 -~~~~~ll~~r~~~iir~Lc~~l----------------~~e~i~~~l~~il~~~-~d~--~f~~~~v~~L~~il~t~~e 425 (541)
.++.+--=+.-..++++|...+ |.+.+..++++.|... ..+ .-+...|+-|- -...+
T Consensus 225 TDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf---~~~~d 301 (321)
T 1w9c_A 225 TDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLF---SLNQD 301 (321)
T ss_dssp HSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH---HTTTC
T ss_pred hCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH---HccCC
Confidence 2232211123345666665222 3467888888888664 333 33444444443 23456
Q ss_pred HHHHHHHHhh
Q 009182 426 LSELRDLLKK 435 (541)
Q Consensus 426 l~~~R~~L~~ 435 (541)
..+||..||+
T Consensus 302 ~~~Fk~~lrD 311 (321)
T 1w9c_A 302 IPAFKEHLRD 311 (321)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7889999987
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.94 E-value=2.8 Score=40.30 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=85.0
Q ss_pred hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--
Q 009182 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI-- 186 (541)
Q Consensus 109 ~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i-- 186 (541)
..-++.|+|.+.+...+++..+|+++++-+....... ..+.+..++.|..++.|.++.|-+.+..+...+-+.+
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999888999999999999998665332 2678888999999999999999887777766665433
Q ss_pred --cCCCCCC---------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 009182 187 --KNSPSVD---------YGRMAEILVQRAASPDEFTRLTAITWINEFVK 225 (541)
Q Consensus 187 --~~~~~~~---------~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~ 225 (541)
-..+..+ +..+=..++....+.+..+|..|+..+...+-
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 2222211 34555667777788889999999988877654
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.71 E-value=6.8 Score=39.86 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=131.0
Q ss_pred HHhhhhhhc-chhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHHHHHH-
Q 009182 16 FLLYADLFF-YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA- 93 (541)
Q Consensus 16 ~~~~~~~~~-~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~VR~~A- 93 (541)
..+.-+++. .-...++++++.++..-.|++.+||+..++-+.+.++. +. .+...+++.|..++.|.++.|-+.+
T Consensus 46 L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~---el~~~~l~~L~~LL~d~d~~V~K~~I 121 (386)
T 3o2t_A 46 LKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DI---ELLLKLIANLNMLLRDENVNVVKKAI 121 (386)
T ss_dssp HHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CG---GGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 334444333 22467889999999999999999999999888877652 22 3357889999999999999988887
Q ss_pred HHHHHHH----hHhhcccc--------hhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhh--cCCC-----------ch
Q 009182 94 HLLDRLV----KDIVTESD--------QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD--SVPD-----------ID 148 (541)
Q Consensus 94 ~~L~~l~----kdi~~e~~--------~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~--~~~~-----------~~ 148 (541)
.+...+. +-+....+ -..+..+--.+...+.+.|.-||..++.-+..+. ..++ .+
T Consensus 122 ~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d 201 (386)
T 3o2t_A 122 LTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHD 201 (386)
T ss_dssp HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTS
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCC
Confidence 5543332 22222111 1345666667777788899999999998887653 1111 01
Q ss_pred hh-h----------------chHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCC
Q 009182 149 ML-G----------------FLPDFLDGLFNMLSDS--SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD 209 (541)
Q Consensus 149 l~-~----------------~lp~~L~~L~~lL~D~--~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~ 209 (541)
+. . -=..+++.|++.+.++ ++-.=.++.++|..+. +..+ ..+..|++.+.....+..
T Consensus 202 ~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Ia---k~RP-~~~~rIl~aL~~l~~n~p 277 (386)
T 3o2t_A 202 ISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIA---RQRP-MFMSEVIQAYETLHANLP 277 (386)
T ss_dssp CCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHH---HHSG-GGHHHHHHHHHHHHHCC-
T ss_pred CCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHH---HhcH-HHHHHHHHHHHhhcCCCC
Confidence 10 0 1124467777777753 2322333444444444 3322 347888888876422211
Q ss_pred --------HHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhc
Q 009182 210 --------EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (541)
Q Consensus 210 --------~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l 246 (541)
..++.+.=..+..+.+..+ -.||-++|-..+....
T Consensus 278 ~t~sk~qvkSv~KtLR~~Ll~lLK~p~--s~~~~~~I~~~L~~Lg 320 (386)
T 3o2t_A 278 PTLAKSQVSSVRKNLKLHLLSVLKHPA--SLEFQAQITTLLVDLG 320 (386)
T ss_dssp ---CGGGHHHHHHHHHHHHHHHHTSGG--GGGGHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCC--chhhHHHHHHHHHHHc
Confidence 1233332122223333333 3478888887777644
No 121
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=93.41 E-value=6.7 Score=38.82 Aligned_cols=181 Identities=11% Similarity=0.090 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHhhcCCCc-h--hhhchHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHhcCCCCCChHHHHHHHHHh
Q 009182 129 YVRQFLVGWITVLDSVPDI-D--MLGFLPDFLDGLFNMLSDSSHEIRQ-QADSALWEFLQEIKNSPSVDYGRMAEILVQR 204 (541)
Q Consensus 129 ~vR~~a~~~l~~L~~~~~~-~--l~~~lp~~L~~L~~lL~D~~~eVR~-~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~ 204 (541)
.+|+-++..+....+..+. + ...++|.+++.++.=-.++.|+.|. ++-.++..++..++....+.++.|++.+.++
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~ 123 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC 123 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455555555554443321 2 1244555555444333345555553 2444555555555544345566666665544
Q ss_pred c----C---CCCHHHHHHHHHHHHHHHhhcCcCccc----chhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCC
Q 009182 205 A----A---SPDEFTRLTAITWINEFVKLGGDQLVP----YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (541)
Q Consensus 205 ~----~---~~~~~vr~~al~wL~~l~~~~~~~l~p----~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~ 273 (541)
+ + +.-|+.|.+-..+++.+...+-..+.. .+..++..++.+.++++++|-+.+.+++..+++.+.+.++
T Consensus 124 TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~ 203 (321)
T 1w9c_A 124 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEA 203 (321)
T ss_dssp HHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChH
Confidence 2 2 245899998888888888776655543 2456677777788899999999988888888777653211
Q ss_pred ---C------CC-hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 274 ---G------FD-VGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (541)
Q Consensus 274 ---~------~~-l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~ 309 (541)
. .+ +..++.++++.....+.......|.-+..+.+.
T Consensus 204 ~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 204 AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHc
Confidence 0 01 256777788877777777666666666666654
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.16 E-value=13 Score=43.12 Aligned_cols=168 Identities=10% Similarity=0.087 Sum_probs=108.1
Q ss_pred HHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhcCCCC----CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 155 DFLDGLFNMLSD----SSHEIRQQADSALWEFLQEIKNSPS----VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 155 ~~L~~L~~lL~D----~~~eVR~~a~~~L~~ll~~i~~~~~----~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~ 226 (541)
+.++.++.++.+ .++.+|+.+.-+++.++........ ..++.+.+.+.+.....+++-+..++..|+++..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 445555556655 4678999999999999887654321 1267888888888877787777777777776532
Q ss_pred cCcCcccchhhHHHHHhhhcCC------C-ChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc--CCCCHHHHH
Q 009182 227 GGDQLVPYYADILGAILPCISD------K-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL--SSEWEATRI 297 (541)
Q Consensus 227 ~~~~l~p~l~~llp~ll~~l~d------~-~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L--~~~~~~~R~ 297 (541)
|..++.+.+++.. + ...+|.+|..++..+ ... +-..+-+++.+.+ ..++.+.|+
T Consensus 470 ---------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~---~~~-----~p~~v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 ---------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNI---AKR-----DPRKVQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp ---------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTG---GGT-----CHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred ---------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHh---hhh-----chHHHHHHHHHHhcCCCCChHHHH
Confidence 4556666666532 1 245777776654433 111 1235667788888 567888999
Q ss_pred HHHHHHHHHHhhChHHHhhhhHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhc
Q 009182 298 EALHWISTLLNRHRTEVLHFLNDIFDTLLKA-LSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 298 aal~wL~~L~~~~~~~i~~~l~~l~p~Ll~~-L~D~~~~V~~~~~~~L~~i~~ 349 (541)
+|+..+ .+..|+.- .+..+... -.|++..|++-+...|..+++
T Consensus 533 aA~~~L---m~t~P~~~------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 533 RSCIVF---FESKPSVA------LVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHH---HHTCCCHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH---HHHCcCHH------HHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 988754 34444321 22223333 357889999988888998884
No 123
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.43 E-value=12 Score=37.14 Aligned_cols=191 Identities=12% Similarity=0.079 Sum_probs=132.5
Q ss_pred hhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchh---hhhH---HHHHHHHHHHhhcCCCHHHHHHHHH---H--H
Q 009182 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD---FIIF---FNQIFDALCKLSADSDANVQSAAHL---L--D 97 (541)
Q Consensus 29 ~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~---~~~~---~~~i~~~L~kl~~D~d~~VR~~A~~---L--~ 97 (541)
|-..++..++.++..=+.+.|+-++..+.++.+.-.+. ...| -+++++.|+++..++|...--|.-. + .
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSH
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhH
Confidence 44567788889999999999999988877776542221 1122 3799999999999998765555421 0 1
Q ss_pred HHHhHhhcccchhcHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCc---h-hhhchHHHHHHHHHHcCCCCHHHHH
Q 009182 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI---D-MLGFLPDFLDGLFNMLSDSSHEIRQ 173 (541)
Q Consensus 98 ~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~---~-l~~~lp~~L~~L~~lL~D~~~eVR~ 173 (541)
.+++-++. ++ ..-.+++.+..++.+|-.-+.+.+..+-...+. + +..+.+.|+...-+++.-++.-.|+
T Consensus 155 ~la~~iL~-~~------~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 155 PLAKIILW-SE------QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHHHHHH-SG------GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhc-cH------HHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 12222221 12 234667888889999999999888876544322 1 3456778888888899999999999
Q ss_pred HHHHHHHHHHHHhcCCC----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 174 QADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (541)
Q Consensus 174 ~a~~~L~~ll~~i~~~~----~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~ 226 (541)
.+.+.|++++-.=.... ...-..-+..+...++|+...+|..|..-...|+.-
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 99999999985311000 012245667788889999999999999888877653
No 124
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=90.23 E-value=20 Score=40.09 Aligned_cols=112 Identities=12% Similarity=0.188 Sum_probs=71.8
Q ss_pred hhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc---hhhhhHHHHHHHHHHHhhcC---CCHHHHHHH-HHHHHH
Q 009182 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSAD---SDANVQSAA-HLLDRL 99 (541)
Q Consensus 27 ~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~---~~~~~~~~~i~~~L~kl~~D---~d~~VR~~A-~~L~~l 99 (541)
+.+++.+.|.++.++..++..++.++..++..++-... +-+ ++.+++-++..++. .+++=-.+| ..|..+
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV---lP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~ 410 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI---YDKILIDLYDTLADQFINSRHRIISSLKQFTRV 410 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH---HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee---hHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 46677788999999999999999999999999987544 333 35556666666655 555544444 667777
Q ss_pred HhHhhcccchhcHhhhHHHHH---HHhcCCCHHHHHHHHHHHHHhhc
Q 009182 100 VKDIVTESDQFSIEEFIPLLR---ERMNVLNPYVRQFLVGWITVLDS 143 (541)
Q Consensus 100 ~kdi~~e~~~~~l~~~iP~L~---e~l~d~~~~vR~~a~~~l~~L~~ 143 (541)
+.-++.... + -..++|.|. ..|...++.--...++.+..+.+
T Consensus 411 ~r~lv~~~~-y-r~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 411 IRFIVMDKL-Y-RVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHHTTSTT-G-GGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcc-c-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 766665421 1 124445444 44444566555556666655543
No 125
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.92 E-value=12 Score=38.20 Aligned_cols=120 Identities=10% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhCh--HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chh-hHHHHHHHHHHhcccc
Q 009182 294 ATRIEALHWISTLLNRHR--TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQ-HFRQLVVFLVHNFRVD 368 (541)
Q Consensus 294 ~~R~aal~wL~~L~~~~~--~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~-~f~~~m~~LL~~~~~~ 368 (541)
..-..++.++.++..... +.+..+ +..+..+..+|.-+.+.++..++++|+.++- ++. .++.++.++-..-..
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl~~-~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~- 150 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTMLET-EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM- 150 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHS-SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcC-cHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh-
Confidence 345556677777654432 223333 4567888899988889999999999999993 222 388888887643111
Q ss_pred chhhhhhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHHHHHHHhh
Q 009182 369 NSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (541)
Q Consensus 369 ~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~~R~~L~~ 435 (541)
.++ .-|..+-+.+....+.++.-..++-.|.++-+.+++ ++|.+||+
T Consensus 151 ----~e~---------------~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl-~~R~~LR~ 197 (386)
T 2bnx_A 151 ----DEV---------------ERFQPLLDGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRS 197 (386)
T ss_dssp ----HTS---------------CTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHH
T ss_pred ----Cch---------------hhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCH-HHHHHHHH
Confidence 111 123334444555678899889999999998887764 46666664
No 126
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.52 E-value=9.4 Score=38.82 Aligned_cols=121 Identities=10% Similarity=0.184 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhhCh--HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chh-hHHHHHHHHHHhccc
Q 009182 293 EATRIEALHWISTLLNRHR--TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQ-HFRQLVVFLVHNFRV 367 (541)
Q Consensus 293 ~~~R~aal~wL~~L~~~~~--~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~-~f~~~m~~LL~~~~~ 367 (541)
......+++++.++..... +.+.. -+..+..+..+|..+.+.++..++++|+.++. ++. -++.++.++-. ++.
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~-~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~-~~~ 211 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLE-TEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE-RAE 211 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHT-CSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHc-ChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHH-HHH
Confidence 3445566777777755432 22333 34567888999999999999999999999993 222 48888888754 322
Q ss_pred cchhhhhhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHHHHHHHhh
Q 009182 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (541)
Q Consensus 368 ~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~~R~~L~~ 435 (541)
.. ++ .-|..+-+.|....+.++.-..++-.|.++-+.+++ ++|.+||+
T Consensus 212 -~~---e~---------------~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl-~~R~~lR~ 259 (383)
T 3eg5_B 212 -MD---EV---------------ERFQPLLDGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRS 259 (383)
T ss_dssp -HH---TS---------------CTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHH
T ss_pred -hC---CC---------------CcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCH-HHHHHHHH
Confidence 11 11 223334445555678899888899999888777654 45666663
No 127
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.14 E-value=5.4 Score=34.42 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=61.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
.-+..+..++.+.||.+...++..+..+.+..|..+...+ -+|++.+.++++.+++.||+.+...+..--..++..
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3467777888889999999999999999888887665433 567777777777788999999999988888888753
No 128
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=86.12 E-value=27 Score=34.19 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHH--h---hhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcch--
Q 009182 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV--L---HFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAKDL-- 351 (541)
Q Consensus 280 il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i--~---~~l~~l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~~~~-- 351 (541)
-+..+.+.+ ++....|..+++.+..+.. .|..- . +.-..++..+++.++++ .+.-+..++++++...+++
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 344444444 4445567777776655443 22111 0 11234555667777654 4556778899999887432
Q ss_pred -----hhHHHHHHHHHHhccccchhhhhhHHHHHHHhhccCC-------hhhHHHHHHHHhcccCChHHHHHHHHHhHHh
Q 009182 352 -----QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD-------AERVYRELSTILEGEADLDFACTMVQALNLI 419 (541)
Q Consensus 352 -----~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~-------~e~i~~~l~~il~~~~d~~f~~~~v~~L~~i 419 (541)
..++.++..+.....+.++.++..++.++-++..... .+.+...+..+++.++|.+-+..+...|.++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 2456677777776666677788788877777776642 2456666777888888999999999999999
Q ss_pred hcCcHhHHHHHHHH
Q 009182 420 LLTSSELSELRDLL 433 (541)
Q Consensus 420 l~t~~el~~~R~~L 433 (541)
.-.++++.++-+.+
T Consensus 262 ~~~~~~~~~lak~l 275 (304)
T 3ebb_A 262 ISDDSNAVQLAKSL 275 (304)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HhCChhHHHHHHHc
Confidence 98888776665444
No 129
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.06 E-value=33 Score=35.47 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH-HHHH-HHhhcCcCcccchhhHHHHHhhhc----CCC-ChhHHHHHHHHHHHHHHh
Q 009182 195 GRMAEILVQRAASPDEFTRLTAIT-WINE-FVKLGGDQLVPYYADILGAILPCI----SDK-EEKIRVVARETNEELRAI 267 (541)
Q Consensus 195 ~~ii~~Ll~~~~~~~~~vr~~al~-wL~~-l~~~~~~~l~p~l~~llp~ll~~l----~d~-~~~iR~~A~~~~~~L~~~ 267 (541)
.++...+-.++.+++..|...|+. |-.+ +.++.. .+-..++|.+.+.+ ..+ +..||..|.++...++++
T Consensus 325 ~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~----~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 325 EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS----DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH----TTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH----hchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 445556667889999999999884 6554 232221 13344555555554 332 678999999988877543
No 130
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=85.74 E-value=7 Score=36.72 Aligned_cols=170 Identities=11% Similarity=0.004 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc
Q 009182 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (541)
Q Consensus 153 lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~ 232 (541)
+..++++-+.+++=..|++|+.|-+... ..+. .+..+.-..+...-+++..+.|..|+.++....+....+-.
T Consensus 25 ~~~~~k~~~~~lGVr~P~lR~laK~~~k----~~~~---~~~~~~~~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l 97 (232)
T 3jxy_A 25 MARYMKNHFLFLGIQTPERRQLLKDIIQ----IHTL---PDQKDFQIIIRELWDLPEREFQAAALDIMQKYKKHINETHI 97 (232)
T ss_dssp HHHHTTTSSBCCCCCHHHHHHHHHHHHH----HHCC---CCGGGHHHHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGH
T ss_pred HHHHCCCCCeeeccChHHHHHHHHHHHH----hccc---cchhhHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3333333334555567788887744433 2221 11112222333344566778899999888754332222222
Q ss_pred cchhhHHHHHhhhcCCCChhHHH-HHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh
Q 009182 233 PYYADILGAILPCISDKEEKIRV-VARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (541)
Q Consensus 233 p~l~~llp~ll~~l~d~~~~iR~-~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~ 311 (541)
+++...++ . .++=++-+ .|..+.+.+.+. . -+.+.+.+.+-..+++..+|..|+..+... .
T Consensus 98 ~~~~~~l~----~--~~nWd~~D~~a~~~~g~~~~~---~-----p~~~~~~l~~W~~s~~~w~rR~ai~~~l~~--~-- 159 (232)
T 3jxy_A 98 PFLEELIV----T--KSWWDSVDSIVPTFLGDIFLK---H-----PELISAYIPKWIASDNIWLQRAAILFQLKY--K-- 159 (232)
T ss_dssp HHHHHHHT----S--SCCHHHHHHHTTTHHHHHHHH---C-----GGGGGGTHHHHHHSSCHHHHHHHHHTTTTC--G--
T ss_pred HHHHHHHc----c--CCChHHHHHhhHHHHHHHHHH---C-----HHHHHHHHHHHhcCCchHHHHHHHHHHHHH--H--
Confidence 22222222 1 12322222 222333333221 1 122445566667778877777776543211 1
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 312 ~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
.....+.+++.+...+.|++.-|+..+.|.|..++.
T Consensus 160 --~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 160 --QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp --GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred --hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 112334567777788999999999999999999994
No 131
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.61 E-value=34 Score=34.88 Aligned_cols=216 Identities=18% Similarity=0.239 Sum_probs=112.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 009182 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (541)
Q Consensus 114 ~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~ 193 (541)
.|+-.|.+.+.+++|+-|..+-..+..+... ++. -.+-+|++..+.+-+|+-+.. ....
T Consensus 129 ~Fi~~Ll~lfdSeDprER~~LktiLhrIY~k-----------f~~--------~R~~Irk~innif~~fiye~e--~~~G 187 (403)
T 3fga_B 129 KFVLQLLELFDSEDPRERDFLKTTLHRIYGK-----------FLG--------LRAYIRKQINNIFYRFIYETE--HHNG 187 (403)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-----------CHH--------HHHHHHHHHHHHHHHHHHTTC--CCTT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHh-----------hhh--------hHHHHHHHHHHHHHHHhcCcc--cCCC
Confidence 4788899999999999999998888754421 111 112345555555555554322 1223
Q ss_pred hHHHHHHHHH---hcCCC-CHHHHHHHHHHHHHHHhh-cCcCcccchhhHHHHHhhhcCCCChh----------------
Q 009182 194 YGRMAEILVQ---RAASP-DEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEK---------------- 252 (541)
Q Consensus 194 ~~~ii~~Ll~---~~~~~-~~~vr~~al~wL~~l~~~-~~~~l~p~l~~llp~ll~~l~d~~~~---------------- 252 (541)
+.++++++-. ...-+ .++-+ .++...+..+ ....+..|.+++.-.+...+.. +|.
T Consensus 188 IaeLLeilgsIinGfa~PLkeehk---~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-Dp~L~~~vi~~LLk~WP~t 263 (403)
T 3fga_B 188 IAELLEILGSIINGFALPLKEEHK---IFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLTEPVVMALLKYWPKT 263 (403)
T ss_dssp HHHHHHHHHHHHHHCCSSCCHHHH---HHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-CGGGHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHcccCCCchHHHH---HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-CchhHHHHHHHHHHhCCCC
Confidence 4555554433 33222 12222 1233333333 2233444555555555544422 222
Q ss_pred ---HHHHHHHHHHHHHHhhcCCCCCCCh----HhHHHHHHHhcCCCCHHHHHHHHHHH-----HHHHhhChHHHhhhhHH
Q 009182 253 ---IRVVARETNEELRAIKADPADGFDV----GPILSIATRQLSSEWEATRIEALHWI-----STLLNRHRTEVLHFLND 320 (541)
Q Consensus 253 ---iR~~A~~~~~~L~~~i~~~~~~~~l----~~il~~L~~~L~~~~~~~R~aal~wL-----~~L~~~~~~~i~~~l~~ 320 (541)
......+-.+.+++.+.. -++ ..+...+.+.+.+++..+-+.|+..+ ..+.......+ ++-
T Consensus 264 ns~KevlFL~Ele~iLe~~~~----~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~I---lPi 336 (403)
T 3fga_B 264 HSPKEVMFLNELEEILDVIEP----SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKI---LPI 336 (403)
T ss_dssp CHHHHHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHH---HHH
T ss_pred CcHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHH---HHH
Confidence 111111212222222110 122 34556667777899999888888643 22333333333 445
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHhc-chhhHHHHHHHH
Q 009182 321 IFDTLLKALSDP-SDEVVLLVLEVHACIAK-DLQHFRQLVVFL 361 (541)
Q Consensus 321 l~p~Ll~~L~D~-~~~V~~~~~~~L~~i~~-~~~~f~~~m~~L 361 (541)
++|.+.+....- ++.|+..+..+++.+.+ +.+-|+......
T Consensus 337 i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~ 379 (403)
T 3fga_B 337 MFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQF 379 (403)
T ss_dssp HHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 667777665544 88999999999988874 444555544443
No 132
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.44 E-value=34 Score=34.82 Aligned_cols=227 Identities=14% Similarity=0.190 Sum_probs=104.7
Q ss_pred hhhhcc-hhHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 009182 27 ETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADS--DANVQSAAHLLDRLV 100 (541)
Q Consensus 27 ~~~l~~-ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~---~~~~~~~~~~i~~~L~kl~~D~--d~~VR~~A~~L~~l~ 100 (541)
++|.+. ++-.++..|..+|+|-|.+....+..|-... +.-+...++.+| ++.+-.+ ...|-+--+.++.++
T Consensus 123 k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif---~~fiye~e~~~GIaeLLeilgsIi 199 (403)
T 3fga_B 123 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF---YRFIYETEHHNGIAELLEILGSII 199 (403)
T ss_dssp TTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---HHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HHHhcCcccCCCHHHHHHHHHHHH
Confidence 456665 6777899999999999999988877655332 122222333333 3333222 222222112233333
Q ss_pred hHhhcc----cchhcHhhhHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHH
Q 009182 101 KDIVTE----SDQFSIEEFIPLLRERMNVLN-PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (541)
Q Consensus 101 kdi~~e----~~~~~l~~~iP~L~e~l~d~~-~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a 175 (541)
.+.... ...|-...++|.-. .+. ..--+.+..++..+.+.-+ ..-..++.|+++.---++ ..+++
T Consensus 200 nGfa~PLkeehk~fl~~vLlPLHk----~~~~~~y~~qL~ycv~qf~eKDp----~L~~~vi~~LLk~WP~tn--s~Kev 269 (403)
T 3fga_B 200 NGFALPLKEEHKIFLLKVLLPLHK----VKSLSVYHPQLAYCVVQFLEKDS----TLTEPVVMALLKYWPKTH--SPKEV 269 (403)
T ss_dssp HHCCSSCCHHHHHHHHHTTTGGGG----STTGGGTHHHHHHHHHHHHHHCG----GGHHHHHHHHHHTCCSSC--HHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHc----CCcchhhHHHHHHHHHHHHHhCc----hhHHHHHHHHHHhCCCCC--cHHHH
Confidence 322110 00111222222211 000 0001122222222222111 122234455554442222 22222
Q ss_pred HHHHHHHHHHhcCCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHH-HHHH-HHhhcCcCcccchhhHHHHHhhhcCCC
Q 009182 176 DSALWEFLQEIKNSPSVDY----GRMAEILVQRAASPDEFTRLTAIT-WINE-FVKLGGDQLVPYYADILGAILPCISDK 249 (541)
Q Consensus 176 ~~~L~~ll~~i~~~~~~~~----~~ii~~Ll~~~~~~~~~vr~~al~-wL~~-l~~~~~~~l~p~l~~llp~ll~~l~d~ 249 (541)
-.|+.+-+.+...+..++ .++...+-.++.+++..|...|+. |-++ +.++..+....-+|-+.|.+......+
T Consensus 270 -lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~H 348 (403)
T 3fga_B 270 -MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTH 348 (403)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCC
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 233333322221111123 345555667788999999998884 6443 222222222222455555555544443
Q ss_pred -ChhHHHHHHHHHHHHHHh
Q 009182 250 -EEKIRVVARETNEELRAI 267 (541)
Q Consensus 250 -~~~iR~~A~~~~~~L~~~ 267 (541)
++.||..|.++...++++
T Consensus 349 Wn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 349 WNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 789999999998887654
No 133
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=83.26 E-value=17 Score=34.02 Aligned_cols=195 Identities=14% Similarity=0.057 Sum_probs=106.7
Q ss_pred HHHHHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHhhcCCCHHH
Q 009182 10 EIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANV 89 (541)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~i~~~L~kl~~D~d~~V 89 (541)
+-|.++...++|--.. .+.....+.....+|=+.+.+|..|-+... ..+..-...+.+ .+..+..++..+.
T Consensus 7 ~~i~~~L~~~ad~~~a--~~~~~~~k~~~~~lGVr~P~lR~laK~~~k----~~~~~~~~~~~~---~~~~L~~~~~~E~ 77 (232)
T 3jxy_A 7 KALQEHFTAHQNPEKA--EPMARYMKNHFLFLGIQTPERRQLLKDIIQ----IHTLPDQKDFQI---IIRELWDLPEREF 77 (232)
T ss_dssp HHHHHHHHTTCCHHHH--HHHHHHTTTSSBCCCCCHHHHHHHHHHHHH----HHCCCCGGGHHH---HHHHHHTSSBHHH
T ss_pred HHHHHHHHHcCCHHHH--HHHHHHCCCCCeeeccChHHHHHHHHHHHH----hccccchhhHHH---HHHHHhcCcHHHH
Confidence 4555666555553332 334444444456777777888877643322 211110011222 2334456677778
Q ss_pred HHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhc-CCCHHHHHHHH-HHHHHhhcCCCchhhhchHH-HHHHHHHHcC
Q 009182 90 QSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLV-GWITVLDSVPDIDMLGFLPD-FLDGLFNMLS 165 (541)
Q Consensus 90 R~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~-d~~~~vR~~a~-~~l~~L~~~~~~~l~~~lp~-~L~~L~~lL~ 165 (541)
|-.| ..+...-+. .++ .-++.+.+.+. ..|+.+--..+ ..++.+..- -|. ..+.+..++.
T Consensus 78 r~~ai~~l~~~~k~-~~~-------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~--------~p~~~~~~l~~W~~ 141 (232)
T 3jxy_A 78 QAAALDIMQKYKKH-INE-------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLK--------HPELISAYIPKWIA 141 (232)
T ss_dssp HHHHHHHHHHTGGG-CCG-------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH--------CGGGGGGTHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCH-------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHH--------CHHHHHHHHHHHhc
Confidence 8777 333221111 111 11344444443 36666644332 333332221 223 4455667999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch
Q 009182 166 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (541)
Q Consensus 166 D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l 235 (541)
|++.=+|+.+...+ +.-. ...+...+.+++.....|++..||.+.-.|+.++..-.++.+.+|+
T Consensus 142 s~~~w~rR~ai~~~---l~~~---~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 142 SDNIWLQRAAILFQ---LKYK---QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp SSCHHHHHHHHHTT---TTCG---GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCchHHHHHHHHHH---HHHH---hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999988885543 2111 1346778888888899999999999988888887665555554444
No 134
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=82.80 E-value=4.8 Score=35.74 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=59.4
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
...+..|..++++.||.+...++..+..+.+..|..+...+ -+|++.+.+++.. +++.||+.+...+..--..++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34467778888999999999999999999988887665433 3477777777765 6789999998888888777764
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.59 E-value=15 Score=31.47 Aligned_cols=83 Identities=13% Similarity=0.056 Sum_probs=58.2
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhcCCCHHHHHHH-
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSADSDANVQSAA- 93 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~D~d~~VR~~A- 93 (541)
+.+.|.+......-.+.+..+.+-++.+++.+...|...+..++++|+..+-..+ .+..+.+.+++..+++.||+-.
T Consensus 27 leicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil 106 (140)
T 3ldz_A 27 LDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLK 106 (140)
T ss_dssp HHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHH
Confidence 5566666664555566778888889999999999999999999999875432111 2344555566666888999887
Q ss_pred HHHHHH
Q 009182 94 HLLDRL 99 (541)
Q Consensus 94 ~~L~~l 99 (541)
+.+..-
T Consensus 107 ~li~~W 112 (140)
T 3ldz_A 107 ALMVEW 112 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 136
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=81.96 E-value=10 Score=35.62 Aligned_cols=120 Identities=10% Similarity=0.201 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhhCh--HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--chhh-HHHHHHHHHHhcccc
Q 009182 294 ATRIEALHWISTLLNRHR--TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQH-FRQLVVFLVHNFRVD 368 (541)
Q Consensus 294 ~~R~aal~wL~~L~~~~~--~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~--~~~~-f~~~m~~LL~~~~~~ 368 (541)
.....++.++.++..... +.+..+ +..+..+..+|..+++.+|..++++|+.++- +++- ++.++.++-.. +..
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~-~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~-~~~ 146 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLET-EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER-AEM 146 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTS-SSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcC-cHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH-HHh
Confidence 345567777777765332 223333 4567888899988899999999999999993 2234 78888777542 110
Q ss_pred chhhhhhHHHHHHHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHHHHHHHhh
Q 009182 369 NSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (541)
Q Consensus 369 ~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~~R~~L~~ 435 (541)
.+ ..-|..+-+.+....+.++.-..++-.|.+.-+.+++ ++|.+||+
T Consensus 147 ----~e---------------~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl-~~R~~lR~ 193 (233)
T 2f31_A 147 ----DE---------------VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRS 193 (233)
T ss_dssp ----HT---------------SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHH
T ss_pred ----CC---------------cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCH-HHHHHHHH
Confidence 01 1223334444555678899888899998888776554 46777775
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.57 E-value=9.9 Score=33.68 Aligned_cols=80 Identities=9% Similarity=0.022 Sum_probs=53.9
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhcC-CCHHHHHHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSAD-SDANVQSAA 93 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~D-~d~~VR~~A 93 (541)
+.+.|.+......-.+.+..+.+-++.+++.|...|...+..++++|+..+-..+ .+.++.+.+++.. +++.||+-+
T Consensus 37 leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~ki 116 (163)
T 1x5b_A 37 MDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKL 116 (163)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHH
Confidence 4455666654445566777788888999999999999999999999875432111 2334445555543 677888776
Q ss_pred -HHH
Q 009182 94 -HLL 96 (541)
Q Consensus 94 -~~L 96 (541)
+.+
T Consensus 117 l~li 120 (163)
T 1x5b_A 117 KSLM 120 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 443
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=79.37 E-value=9.8 Score=33.21 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=60.4
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQ 184 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D------~~~eVR~~a~~~L~~ll~ 184 (541)
..-+..|..++++.||.+...++..+..+.+..|..|-..+ -+|++.|.+++++ ++++||..+...+..--.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34477888899999999999999999999888887654322 3667888888875 578999999888888887
Q ss_pred HhcC
Q 009182 185 EIKN 188 (541)
Q Consensus 185 ~i~~ 188 (541)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7753
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=79.27 E-value=15 Score=31.98 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=57.0
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhcC------CCHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSAD------SDAN 88 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~D------~d~~ 88 (541)
+.+.|.+..-..--.+.+..+.+-++.+++.|..+|...+..++++|+..+-..+ .+.++.|.+++.+ +++.
T Consensus 23 leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~ 102 (148)
T 1mhq_A 23 QNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGK 102 (148)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHH
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHH
Confidence 4455666554445556677788888999999999999999999999976442111 3556677777764 4778
Q ss_pred HHHHH-HHH
Q 009182 89 VQSAA-HLL 96 (541)
Q Consensus 89 VR~~A-~~L 96 (541)
||+-+ +.+
T Consensus 103 Vk~kil~li 111 (148)
T 1mhq_A 103 VKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 88876 443
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.96 E-value=20 Score=31.25 Aligned_cols=81 Identities=11% Similarity=-0.001 Sum_probs=57.3
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhcC------CCHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSAD------SDAN 88 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~D------~d~~ 88 (541)
+.+.|.+..-..--.+.+..+.+-++++++.|...|...+..++++|+..+-..+ .+.++.|.+++++ +++.
T Consensus 33 leicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~ 112 (149)
T 3g2s_A 33 NGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEK 112 (149)
T ss_dssp HHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHH
T ss_pred HHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHH
Confidence 5566666664445556778888889999999999999999999999975442111 2446667777764 5778
Q ss_pred HHHHH-HHHH
Q 009182 89 VQSAA-HLLD 97 (541)
Q Consensus 89 VR~~A-~~L~ 97 (541)
||+-. +.+.
T Consensus 113 Vk~kil~li~ 122 (149)
T 3g2s_A 113 VKNKILELLY 122 (149)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 88876 4443
No 141
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=74.97 E-value=81 Score=32.56 Aligned_cols=217 Identities=15% Similarity=0.196 Sum_probs=112.6
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~ 192 (541)
..|+-.|.+.+.+++|.-|..+-..+..+-.. ..+-.+-+|++..+.+-+|+-+.. ...
T Consensus 161 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~K-------------------f~~~R~~Irk~i~nif~~fi~e~e--~~n 219 (449)
T 2npp_B 161 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGK-------------------FLGLRAYIRKQINNIFYRFIYETE--HHN 219 (449)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHS-------------------CTTTHHHHHHHHHHHHHHHHHTCS--CCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhcccC--CCC
Confidence 35788899999999999999988877654322 222223455555555555654432 123
Q ss_pred ChHHHHHHHHHhcCC---C-CHHHHHHHHHHHHHHHhhc-CcCcccchhhHHHHHhhhcCC------------------C
Q 009182 193 DYGRMAEILVQRAAS---P-DEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCISD------------------K 249 (541)
Q Consensus 193 ~~~~ii~~Ll~~~~~---~-~~~vr~~al~wL~~l~~~~-~~~l~p~l~~llp~ll~~l~d------------------~ 249 (541)
.+.+++.++-...+. + .++.+. ++...+..+- ...+.-|.+++.-.+...+.. +
T Consensus 220 GIaeLLeilgSIinGfa~PLKeehk~---fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~t 296 (449)
T 2npp_B 220 GIAELLEILGSIINGFALPLKEEHKI---FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKT 296 (449)
T ss_dssp CHHHHHHHHHHHHSSCCSSCCHHHHH---HHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHH---HHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC
Confidence 466666666554432 2 233332 2233333332 233334555554444443321 1
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCCh----HhHHHHHHHhcCCCCHHHHHHHHHHHH-H-HHhhChHHHhhhhHHHHH
Q 009182 250 EEKIRVVARETNEELRAIKADPADGFDV----GPILSIATRQLSSEWEATRIEALHWIS-T-LLNRHRTEVLHFLNDIFD 323 (541)
Q Consensus 250 ~~~iR~~A~~~~~~L~~~i~~~~~~~~l----~~il~~L~~~L~~~~~~~R~aal~wL~-~-L~~~~~~~i~~~l~~l~p 323 (541)
++.......+-...+++.+.. -++ ..+...+.+.+.+++..+-+.|+..+. . +.. -+..+...++|
T Consensus 297 ns~KevlFL~eleeile~~~~----~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~----li~~n~~~IlP 368 (449)
T 2npp_B 297 HSPKEVMFLNELEEILDVIEP----SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMS----LISDNAAKILP 368 (449)
T ss_dssp CHHHHHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHH----HHHTTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHH----HHHhchhhhHH
Confidence 111111111222222221111 112 345566677778999999888886331 1 111 11223344555
Q ss_pred HHHHhcC----CC-CHHHHHHHHHHHHHHhc-chhhHHHHHHHH
Q 009182 324 TLLKALS----DP-SDEVVLLVLEVHACIAK-DLQHFRQLVVFL 361 (541)
Q Consensus 324 ~Ll~~L~----D~-~~~V~~~~~~~L~~i~~-~~~~f~~~m~~L 361 (541)
.+...|. .- ++.|+..+..++..+.+ +.+-|+......
T Consensus 369 ii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~ 412 (449)
T 2npp_B 369 IMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQF 412 (449)
T ss_dssp HHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 5555543 22 67899999999998884 455666655443
No 142
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=74.73 E-value=20 Score=33.26 Aligned_cols=160 Identities=10% Similarity=-0.135 Sum_probs=91.3
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHH
Q 009182 162 NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGA 241 (541)
Q Consensus 162 ~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ 241 (541)
.+++=..|++|+.+-+... ..+. .+.-... ..+....+++..+.|..|+.+++...... .+.-++.
T Consensus 28 ~flGV~~P~lR~laK~~~k----~~~~--~~~~~~~-~~~~~L~~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~ 93 (220)
T 2b6c_A 28 VFAGIPAPERQALSKQLLK----ESHT--WPKEKLC-QEIEAYYQKTEREYQYVAIDLALQNVQRF-------SLEEVVA 93 (220)
T ss_dssp CCCCCCHHHHHHHTHHHHH----HHTT--SCHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHTGGGC-------CHHHHHH
T ss_pred eeeCCChHHHHHHHHHHHH----Hhcc--CcccchH-HHHHHHHcCchhHHHHHHHHHHHHHHhhC-------CHHHHHH
Confidence 3444456777877644332 1100 0111112 44444455677888999988887543221 2344444
Q ss_pred HhhhcCC-CChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 009182 242 ILPCISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (541)
Q Consensus 242 ll~~l~d-~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~l~~ 320 (541)
+-..+.+ ++=++-+....+.+.+. ... -+.+.+.+.+-..+++..+|..|+........ ..+.+.
T Consensus 94 ~~~~l~~~~nWd~~D~~a~~~~~~~---~~~-----~~~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~------~~~~~~ 159 (220)
T 2b6c_A 94 FKAYVPQKAWWDSVDAWRKFFGSWV---ALH-----LTELPTIFALFYGAENFWNRRVALNLQLMLKE------KTNQDL 159 (220)
T ss_dssp GGGGTTTTCSHHHHHHHHHHHHHHH---HHS-----GGGHHHHHHHHTTCSSHHHHHHHHHTTTTCGG------GCCHHH
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHH---HHC-----hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH------CCCHHH
Confidence 4444433 22222222223344332 211 13466777888888888888887764321111 234567
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 009182 321 IFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (541)
Q Consensus 321 l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~ 349 (541)
+++.+-..+.|++.-|+..+.|.|..++.
T Consensus 160 ~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 160 LKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 78877778999999999999999999994
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=73.91 E-value=12 Score=32.49 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHhc
Q 009182 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQEIK 187 (541)
Q Consensus 116 iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D------~~~eVR~~a~~~L~~ll~~i~ 187 (541)
+..+..++++.||.+...++..+..+.+..|..+...+ -+|++.|.+++++ ++++||+.+...+..--..++
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 66677888899999999999999999998887664433 4778888888875 478999998888888777765
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=73.78 E-value=23 Score=31.53 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=55.9
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhc------CCCHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSA------DSDAN 88 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~------D~d~~ 88 (541)
+.+.|.+.....--.+.+..+.+-++.+++.|..+|...+..++++|+..+-..+ .+.++.|.+++. ..+..
T Consensus 35 leicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~ 114 (171)
T 1juq_A 35 IGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEK 114 (171)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHH
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHH
Confidence 4566666664444556677788889999999999999999999999875432111 244666667665 24678
Q ss_pred HHHHH-HHHH
Q 009182 89 VQSAA-HLLD 97 (541)
Q Consensus 89 VR~~A-~~L~ 97 (541)
||+-+ +.+.
T Consensus 115 Vk~kil~li~ 124 (171)
T 1juq_A 115 VKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 88877 4443
No 145
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=72.76 E-value=1.4e+02 Score=34.36 Aligned_cols=185 Identities=14% Similarity=0.047 Sum_probs=112.7
Q ss_pred hhhHHHHHhhhcCC----CChhHHHHHHHHHHHHHHh-hcCCCC-C-CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009182 235 YADILGAILPCISD----KEEKIRVVARETNEELRAI-KADPAD-G-FDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (541)
Q Consensus 235 l~~llp~ll~~l~d----~~~~iR~~A~~~~~~L~~~-i~~~~~-~-~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~ 307 (541)
-++.+..+...+.. +++.+|++|.-+.+.+.+- +.+.+. . -.+..+.+.+.+.+.+.+...+..+|+.||-++
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 35666766666655 4577888888777777543 332211 1 114667777777776777778888888887776
Q ss_pred hhChHHHhhhhHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHHHH
Q 009182 308 NRHRTEVLHFLNDIFDTLLKALSD-------PSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALII 380 (541)
Q Consensus 308 ~~~~~~i~~~l~~l~p~Ll~~L~D-------~~~~V~~~~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~ii 380 (541)
. | ..++.+.+.+.. ....||..++++|.++... +=+.+-.-+++.|.+...--|-|.....
T Consensus 469 ~--p--------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p~~v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 469 Q--P--------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DPRKVQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp C--G--------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred C--h--------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh--chHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 5 2 234555555532 2357888999999999842 2234555566777544333344433333
Q ss_pred HHhhccCChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhc-CcHhHHHHHHH
Q 009182 381 RRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILL-TSSELSELRDL 432 (541)
Q Consensus 381 r~Lc~~l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~-t~~el~~~R~~ 432 (541)
. |=..-++......++..+..|.+....+-+-..|..+.- +.|...+++..
T Consensus 537 ~-Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~ 588 (1056)
T 1lsh_A 537 V-FFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAA 588 (1056)
T ss_dssp H-HHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHH
T ss_pred H-HHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 2 212235578999999999999887444444444444333 55766776543
No 146
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=71.93 E-value=23 Score=35.94 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=28.0
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC
Q 009182 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (541)
Q Consensus 278 ~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~ 310 (541)
+..+..+...+.+.+..+|..|++.|.++....
T Consensus 161 ~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 161 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 457788888899989999999999998888765
No 147
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=68.96 E-value=41 Score=31.01 Aligned_cols=137 Identities=7% Similarity=-0.043 Sum_probs=82.4
Q ss_pred HHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCchhhhchHH
Q 009182 78 LCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPD 155 (541)
Q Consensus 78 L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~ 155 (541)
+..+...+.-+.|-.| ..+...-+.+ .+ .-++.+...+. ..|+.+--..+..++.+....+ ..
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~-~~-------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-------~~ 124 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRF-SL-------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-------TE 124 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGC-CH-------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-------GG
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhC-CH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-------HH
Confidence 3445666777788777 4444332211 11 12343444443 3667766655544544332211 12
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch
Q 009182 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (541)
Q Consensus 156 ~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l 235 (541)
+.+.+..++.|++.=+|+.|...+ +.-.. ..+.+.+.+++-....|++..||...-.++.++....++...+|+
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~---~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKE---KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGG---GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHH---CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 455677899999999998885543 22221 346788888888899999999999888888877665554444443
No 148
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=68.60 E-value=22 Score=31.19 Aligned_cols=76 Identities=7% Similarity=0.103 Sum_probs=57.8
Q ss_pred hhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCchhhhchH--HHHHH-HHHHcC---CCCHHHHHHHHHHHHHHHHH
Q 009182 113 EEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLS---DSSHEIRQQADSALWEFLQE 185 (541)
Q Consensus 113 ~~~iP~L~e~l~-d~~~~vR~~a~~~l~~L~~~~~~~l~~~lp--~~L~~-L~~lL~---D~~~eVR~~a~~~L~~ll~~ 185 (541)
..-+..+..+++ ..|+.+...++..+..+.+..|..+...+- +|++. |.+++. ++...||+.+...+..--..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 344667778887 489999999999999999888876654333 46777 667774 45678999998888888877
Q ss_pred hcC
Q 009182 186 IKN 188 (541)
Q Consensus 186 i~~ 188 (541)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 764
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.98 E-value=11 Score=32.52 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCCC---C--------hhHHHHHHHHHH
Q 009182 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK---E--------EKIRVVARETNE 262 (541)
Q Consensus 194 ~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d~---~--------~~iR~~A~~~~~ 262 (541)
...++++|.++++++++.++..|+.-|..++..+.+.+...+-+=...|-.+.... + ..||+.|.++..
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47889999999999999999999999999988888776655554445444444332 2 358888888766
Q ss_pred HH
Q 009182 263 EL 264 (541)
Q Consensus 263 ~L 264 (541)
.+
T Consensus 127 ll 128 (140)
T 1vdy_A 127 AI 128 (140)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 150
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.08 E-value=13 Score=32.04 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHHHH---HHHHHHH--
Q 009182 6 SFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQ---IFDALCK-- 80 (541)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~~~---i~~~L~k-- 80 (541)
+++|+-|++-+- ........+|.+-+.+-|+|++++|.+-|...|..+++.-+..+...... ++..+..
T Consensus 29 gylm~EIA~~T~------~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~ 102 (140)
T 1vdy_A 29 VYKLEEICDLLR------SSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYK 102 (140)
T ss_dssp HHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCC
T ss_pred HHHHHHHHHHHH------hcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcC
Confidence 356666665543 11124458899999999999999998888877777765433333322221 2222221
Q ss_pred hhcC------CCHHHHHHHHHHHHH
Q 009182 81 LSAD------SDANVQSAAHLLDRL 99 (541)
Q Consensus 81 l~~D------~d~~VR~~A~~L~~l 99 (541)
...| +-.+||+.|..+-.+
T Consensus 103 g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 103 GHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp CCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred CCCCcccccchhHHHHHHHHHHHHH
Confidence 2323 236999999443333
No 151
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=66.73 E-value=84 Score=29.91 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=50.9
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 282 SIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 282 ~~L~~~L~~~~-~~~R~aal~wL~~L~~~~~~~i~~~l--~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
|.|.-.-++.. +..|.++|..+|++.+...+++..|+ .+++|..++.+.-.++..+..+.-.+.+|-
T Consensus 104 PfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 104 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 44433333333 44799999999999999888887773 458999999999888887777777777776
No 152
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=65.64 E-value=35 Score=29.78 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=54.5
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHH-HHHhhc---CCCHHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDA-LCKLSA---DSDANV 89 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~-D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~-L~kl~~---D~d~~V 89 (541)
+.+.|.+.....--.+.+..+.+-++ .+++.|...|...+..++++|+..+-..+ .+.++. +.+++. +++..|
T Consensus 38 leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~V 117 (157)
T 1elk_A 38 MEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIV 117 (157)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHH
Confidence 45666666544555667777888887 68999999999999999999875442111 234454 556553 566788
Q ss_pred HHHH-HHHHH
Q 009182 90 QSAA-HLLDR 98 (541)
Q Consensus 90 R~~A-~~L~~ 98 (541)
|+-+ +.+..
T Consensus 118 k~kil~li~~ 127 (157)
T 1elk_A 118 HDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8776 44433
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.94 E-value=36 Score=31.41 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
...+..|..+++..||.+...++..+..+.+..|..+...+ -+|++.+.+++++ ++.+||+.+.+.+..-...++..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 34466777888899999999999999998887776553322 2366666666654 57899999988888888777643
No 154
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=64.80 E-value=72 Score=31.58 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=67.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhch--hhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcccchhc
Q 009182 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (541)
Q Consensus 35 ~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~--~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e~~~~~ 111 (541)
..++....+.+.....|+..|+.++.....| .+.. .++.+..++.+++..+..|-+.| +.|-.++.-. +.+...
T Consensus 163 ~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s--e~~~~l 239 (339)
T 3dad_A 163 SCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS--ENNAPL 239 (339)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC--cccchH
Confidence 3456677788999999999999998865433 2222 36788889999988999998888 7665554311 111000
Q ss_pred Hh------------hhHHHHHHHhc---CCCHHHHHHHHHHHHHh
Q 009182 112 IE------------EFIPLLRERMN---VLNPYVRQFLVGWITVL 141 (541)
Q Consensus 112 l~------------~~iP~L~e~l~---d~~~~vR~~a~~~l~~L 141 (541)
+. ...+.+.+.++ ..+.++..+++..|+.+
T Consensus 240 v~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 240 FIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp HHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 00 11334444554 46778888888777744
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.39 E-value=82 Score=29.17 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=56.5
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhh-cCCCHHHHHHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLS-ADSDANVQSAA 93 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~-~D~d~~VR~~A 93 (541)
+.+.|.+......-.+.+..+.+-++.+++.|...|...+..++++++..+-..+ .+.++.|.+++ ..+++.||+-+
T Consensus 30 leicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~ki 109 (226)
T 3zyq_A 30 LQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKI 109 (226)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHH
Confidence 5566666664444566778888889999999999999999999999875331000 12333444444 35678898877
Q ss_pred -HHHHHHHh
Q 009182 94 -HLLDRLVK 101 (541)
Q Consensus 94 -~~L~~l~k 101 (541)
+.+..-..
T Consensus 110 l~li~~W~~ 118 (226)
T 3zyq_A 110 LYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 55444333
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.53 E-value=77 Score=29.13 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=54.5
Q ss_pred HhhhhhhcchhhhhcchhHHHHhhcCCCCHHHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHhhc-CCCHHHHHHH
Q 009182 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSA-DSDANVQSAA 93 (541)
Q Consensus 17 ~~~~~~~~~~~~~l~~ii~~vl~~l~D~d~~VR~~A~eaL~~i~k~~~~~~~~~~--~~i~~~L~kl~~-D~d~~VR~~A 93 (541)
+.+.|.+.....--.+.+..+.+-++.+++.|..+|...+..++++++..+-..+ .+.++.+.+++. +++..||+-+
T Consensus 27 leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~ki 106 (220)
T 1dvp_A 27 LLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKM 106 (220)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4466776664445556777788888999999999999999999998865331110 123444444443 5678898877
Q ss_pred -HHHHH
Q 009182 94 -HLLDR 98 (541)
Q Consensus 94 -~~L~~ 98 (541)
+.+..
T Consensus 107 l~li~~ 112 (220)
T 1dvp_A 107 LELVQT 112 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 44433
No 157
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=60.42 E-value=2.6e+02 Score=32.93 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=79.7
Q ss_pred CcccchhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 009182 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (541)
Q Consensus 230 ~l~p~l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~ 309 (541)
.+..|++.++...-..+...++.+++-+...-..+.+...+ ..-.++++.|..+..+.+...--+|+..|..++..
T Consensus 393 vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~ 468 (1323)
T 3s4w_B 393 VLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL 468 (1323)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc
Confidence 45567777777777777777777777666655555444311 11257899888887666666666799999999999
Q ss_pred ChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009182 310 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (541)
Q Consensus 310 ~~~~i~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~ 348 (541)
.|..+.++.. ++..++..+.+=++.-..+...+++.++
T Consensus 469 ~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 469 NASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp CHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred CHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 9999887544 5556667777777666666778887776
No 158
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=55.63 E-value=1.2e+02 Score=27.56 Aligned_cols=121 Identities=13% Similarity=0.236 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhccccchhhhhhHHHHHHHhhccCChhhHHHHHHHHhccc---------CChHHHHHHHHHhHHhhcCcH
Q 009182 354 FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE---------ADLDFACTMVQALNLILLTSS 424 (541)
Q Consensus 354 f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~l~~e~i~~~l~~il~~~---------~d~~f~~~~v~~L~~il~t~~ 424 (541)
..++|+.++..++.-.... .|.+ +|+..|+.|-+-+ +...-.+.-+-+++.|---.+
T Consensus 44 ~rdi~eall~~~~~~~a~~-------~k~i-------~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~ 109 (211)
T 3bqo_A 44 TRNSAEAIIHGLSSLTACQ-------LRTI-------YICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHD 109 (211)
T ss_dssp HHHHHHHHHHTCSCCCHHH-------HHHH-------HHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCC
T ss_pred HHHHHHHHHhccccccccc-------cchH-------HHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcc
Confidence 3457777777665443321 2222 7888888886542 233445666667776654444
Q ss_pred hH-HHHHHHHhhccCCcchhHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHH-hhccccchHHHHHHHHHHHHhhh
Q 009182 425 EL-SELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQS-LVEEDLNVKFLVQLDKLIRLLET 502 (541)
Q Consensus 425 el-~~~R~~L~~~~~~~~~~~lf~~l~~~w~~n~~~~~slcll~~~y~~a~~ll~~-~~~~~~~~~~l~~id~lvql~es 502 (541)
-+ .+.|+.++ +++++.|+=.+.|+.|..+++. |++-+.+
T Consensus 110 ~lheei~~Llk-----------------------~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~---------------- 150 (211)
T 3bqo_A 110 KLHEEIQNLIK-----------------------IQAIAVCMENGNFKEAEEVFERIFGDPNSH---------------- 150 (211)
T ss_dssp HHHHHHHHHHH-----------------------HHHHHHHHHTTCHHHHHHHHHHHC-----C----------------
T ss_pred cHHHHHHHHHH-----------------------HHHHHHHHHccchHHHHHHHHHHhcCCCCc----------------
Confidence 33 44454444 4688899999999999999999 7877777
Q ss_pred hhhhHhhhhhcC-----CCCChhHHHHHHHHHH
Q 009182 503 PIFAYLRLQVLK-----LRTEDYLFALLFGLTG 530 (541)
Q Consensus 503 p~f~~lRl~ll~-----~~~~~~l~~~l~gllm 530 (541)
..||..|+- ...||.+-.-=|..+|
T Consensus 151 ---~~lr~kL~~II~~Kd~~H~~lqnFSy~~~~ 180 (211)
T 3bqo_A 151 ---MPFKSKLLMIISQKDTFHSFFQHFSYNHMM 180 (211)
T ss_dssp ---CTTHHHHHHHHHTTCTTCHHHHHSCHHHHH
T ss_pred ---hHHHHHHHHHHHccCCCcHHHHHccHHHHH
Confidence 566766663 2236655544444444
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=54.00 E-value=1.5e+02 Score=28.16 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhcCcCcccch--hhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 009182 210 EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEEL 264 (541)
Q Consensus 210 ~~vr~~al~wL~~l~~~~~~~l~p~l--~~llp~ll~~l~d~~~~iR~~A~~~~~~L 264 (541)
+..|.+++.-|+.+++....++..|+ .+++|..+..|.....--|.+|.-..+.+
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 56799999999999988777777775 47889999888776655565665555444
No 160
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.71 E-value=1.2e+02 Score=26.80 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=56.1
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChHHHhhh--hHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 009182 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (541)
Q Consensus 278 ~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~~i~~~--l~~l~p~Ll~~L~D------~~~~V~~~~~~~L~~i~ 348 (541)
...+..+.+.+.+.+..+...||..+-.+..+|+..+... ...++..|.+.++. ..+.|+.++++++..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999998776421 23456677777763 25799999998877766
No 161
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=50.89 E-value=54 Score=34.13 Aligned_cols=160 Identities=16% Similarity=0.252 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHhcC--CCCHHHHH----HHHHHHHHHh--cchh--hHHHHHHHHHHhccccchhhhhhHHHHHHHhhcc
Q 009182 317 FLNDIFDTLLKALS--DPSDEVVL----LVLEVHACIA--KDLQ--HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (541)
Q Consensus 317 ~l~~l~p~Ll~~L~--D~~~~V~~----~~~~~L~~i~--~~~~--~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~~ 386 (541)
++...++.+.+..+ |..++|+. -..++++.+| .+.+ .|+.+=.+.++...+++. ++.=| ..
T Consensus 279 ~i~p~l~~~~~ly~~~d~~~dv~~f~~s~l~~lfa~lSyl~d~e~~~Fk~ld~~~l~i~~~~~~--------~~~fL-S~ 349 (500)
T 3vld_A 279 HVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIEEDEYSLFKTMDKDSLKIGSEAKL--------ITEWL-EL 349 (500)
T ss_dssp HHGGGHHHHHHHHHCTTTCHHHHHHSHHHHHHHHHHHTTSSCSTTHHHHHHHHHTTCTTSSGGG--------HHHHH-HH
T ss_pred HhHHHHHHHHHHhcCchhhhHHHHHhHHHHHHHHHHHhhcccchhHHHHhccccceecCCcchh--------HHHHH-Hh
Confidence 34445555555554 44567655 3346777777 4555 788866666665544332 22222 66
Q ss_pred CChhhHHHHHHHHhcccCChHHHHHHHHHhHHhhcCcHhHHHHHHHHhhccCCcchhHHHHHHHHhhccChHHHHHHHHH
Q 009182 387 LDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLL 466 (541)
Q Consensus 387 l~~e~i~~~l~~il~~~~d~~f~~~~v~~L~~il~t~~el~~~R~~L~~~~~~~~~~~lf~~l~~~w~~n~~~~~slcll 466 (541)
+||+-+++.-.++++. +. +++...+.-+|+-..+ .+.|..+=..+ ++-+.++|
T Consensus 350 iNP~yL~~~~~d~l~~-------------~~--~l~~s~l~Il~NLIs~-------~~~F~~ik~~l--ts~~Il~L--- 402 (500)
T 3vld_A 350 INPQYLVKYHKDVVEN-------------YF--HVSGYSIGMLRNLSAD-------EECFNAIRNKF--SAEIVLRL--- 402 (500)
T ss_dssp SCHHHHHHHCHHHHHH-------------HC--CCSGGGHHHHHHHTTS-------HHHHHTTGGGC--CHHHHHTS---
T ss_pred cCHHHHHHHHHHHHHh-------------cc--ccChhHHHHHHHHhcC-------HHHHHHHHhcc--CHHHHHhC---
Confidence 8888888775444333 32 2366666777776654 46687777777 54444433
Q ss_pred HhhhHHHHHHHHHhhccccchHHHHH-HHHHHH-Hhhh--------hhhhHhhhhhcC
Q 009182 467 AQTYHHASAVIQSLVEEDLNVKFLVQ-LDKLIR-LLET--------PIFAYLRLQVLK 514 (541)
Q Consensus 467 ~~~y~~a~~ll~~~~~~~~~~~~l~~-id~lvq-l~es--------p~f~~lRl~ll~ 514 (541)
-|.-=+.++.+++.++=+++.|++ +|+.+- |+++ |.-..+|++.+|
T Consensus 403 --Py~eqm~LL~~lS~y~ys~~yLln~LP~VmsnLi~~~~~~~I~e~Et~~Lr~~~le 458 (500)
T 3vld_A 403 --PYLEQMQVVETLTRYEYTSKFLLNEMPKVMGSLIGDGSAGAIIDLETVHYRNSALR 458 (500)
T ss_dssp --CHHHHHHHHHHHTTSHHHHHHHHHHCHHHHHHHHCSSCGGGCCCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHhcCchhHHHHHhhhhHHHHHHhcCCCcccccChHHHHHHHHHHH
Confidence 466668999999999999999999 788776 7773 344788988776
No 162
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.36 E-value=39 Score=31.39 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=56.4
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCchhhhch--HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcC
Q 009182 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKN 188 (541)
Q Consensus 113 ~~~iP~L~e~l~d~~~~vR~~a~~~l~~L~~~~~~~l~~~l--p~~L~~L~~lL~D-~~~eVR~~a~~~L~~ll~~i~~ 188 (541)
..-+..|..+++..||.+...++..+..+.+..|..+...+ -+|++.|.++++. ++++||+.+...+..--..++.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 44477888899999999999999999988877776543221 2445555555543 5789999998888888877764
No 163
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.25 E-value=3.9e+02 Score=31.52 Aligned_cols=175 Identities=13% Similarity=0.044 Sum_probs=107.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC--Cch------------hhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 009182 124 NVLNPYVRQFLVGWITVLDSVP--DID------------MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (541)
Q Consensus 124 ~d~~~~vR~~a~~~l~~L~~~~--~~~------------l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~ 189 (541)
++.+...|..+-..+..-.... ..+ +-.|+|.++.-.-.++.-.++.||..+...-..+-+.+.
T Consensus 355 ~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd-- 432 (1323)
T 3s4w_B 355 YSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD-- 432 (1323)
T ss_dssp HHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC--
T ss_pred HcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc--
Confidence 4556666777777666543321 122 335778777766677788889999988776555554432
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhh
Q 009182 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIK 268 (541)
Q Consensus 190 ~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L~~~i 268 (541)
..+-+.++..++.++-+++..--.+|+.-+.+++...+..+.|| ...+..++..+.+ +..+||.. .+....+.=.-
T Consensus 433 -~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~-a~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~ 509 (1323)
T 3s4w_B 433 -TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLN-AAFVKGILDYLENMSPQQIRKI-FCILSTLAFSQ 509 (1323)
T ss_dssp -HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHT-HHHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred -chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHH-HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCC
Confidence 12247899999998666655444557777788888778878775 4467777888876 56788876 33343432111
Q ss_pred cCCCCCCCh-HhHHHHHHHhcCCCCHHH-HHHHHHHHH
Q 009182 269 ADPADGFDV-GPILSIATRQLSSEWEAT-RIEALHWIS 304 (541)
Q Consensus 269 ~~~~~~~~l-~~il~~L~~~L~~~~~~~-R~aal~wL~ 304 (541)
...+ ...+ +++-=++.+++.+.+... |+..+-++.
T Consensus 510 ~~~~-~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~ 546 (1323)
T 3s4w_B 510 QPGT-SNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVT 546 (1323)
T ss_dssp CSSC-CCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCc-chhhHHhHHHHHHHHHhCCchhhhhhhHHHHHH
Confidence 1111 1112 345556678888877765 444333333
No 164
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=48.51 E-value=1.9e+02 Score=28.02 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=65.8
Q ss_pred cchhHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhc--hhhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHhHhhcc
Q 009182 31 QQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVR--GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (541)
Q Consensus 31 ~~ii~~vl~~l~D-~d~~VR~~A~eaL~~i~k~~~--~~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~kdi~~e 106 (541)
..++..++..+.+ ..+.-|-.++..+.|+..... .-+...+.++++.+.....+++.++|-++ ..+-++.--...+
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence 3455556666653 345567777777777665432 23446678888888888888999999888 5444432222221
Q ss_pred cchhcHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 009182 107 SDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSV 144 (541)
Q Consensus 107 ~~~~~l~~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~ 144 (541)
.+......++..+.+.+.. +++++..-++-+++.+...
T Consensus 226 ~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 226 HNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 1111122233333333332 5677777777777776644
No 165
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=47.20 E-value=1.1e+02 Score=25.51 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=57.4
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhChH--
Q 009182 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT-- 312 (541)
Q Consensus 235 l~~llp~ll~~l~d~~~~iR~~A~~~~~~L~~~i~~~~~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~~-- 312 (541)
+..-+...|..++.+.+.|...+.=+... . -..+.++..+.+.+.......|+..+..+..+...+..
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h----~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~ 75 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIEN----K------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKN 75 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHT----G------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHh----H------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccC
Confidence 34445555666766666665544333221 1 12467888888888877888999999999988888743
Q ss_pred --HHhhhhHHHHHHHHHhcCCCC
Q 009182 313 --EVLHFLNDIFDTLLKALSDPS 333 (541)
Q Consensus 313 --~i~~~l~~l~p~Ll~~L~D~~ 333 (541)
.+.+.+...+|..+....|+.
T Consensus 76 ~~~f~~~f~~~l~~~~~~~~~~~ 98 (132)
T 4flb_A 76 AIIFRESFADVLPEAAALVKDPS 98 (132)
T ss_dssp CTHHHHHHHTTHHHHHHTTCSTT
T ss_pred hHHHHHHHHHHHHHHHHHhCCHH
Confidence 344455566666666666543
No 166
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=44.88 E-value=2.9e+02 Score=28.70 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcCcccchh--hHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 009182 208 PDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISDKEEKIRVVARETNEELR 265 (541)
Q Consensus 208 ~~~~vr~~al~wL~~l~~~~~~~l~p~l~--~llp~ll~~l~d~~~~iR~~A~~~~~~L~ 265 (541)
.|+.+-..||+=|++|+...|..-. .+. +.=..++..|++++++||..|..+.+.++
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~-i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESID-VLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHH-HHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhH-HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3677777889999999998765321 111 22457788999999999999988888775
No 167
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=39.94 E-value=4.3e+02 Score=29.33 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=97.9
Q ss_pred HHHHHHHHhhcCC-CchhhhchHHHHHHHHHHcCCCC-----HHH----HHHHHHHHHHHHHHhcC----CCC-C-----
Q 009182 133 FLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSS-----HEI----RQQADSALWEFLQEIKN----SPS-V----- 192 (541)
Q Consensus 133 ~a~~~l~~L~~~~-~~~l~~~lp~~L~~L~~lL~D~~-----~eV----R~~a~~~L~~ll~~i~~----~~~-~----- 192 (541)
.+..||-...+-. +.....++..++..+-....=+| ..+ +..+.....++.++=.. .+. .
T Consensus 252 ~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~ 331 (799)
T 1vsy_4 252 RTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSF 331 (799)
T ss_dssp HHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHH
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCCHH
Confidence 3555654333221 34566777777776666654322 222 33333333333333111 011 0
Q ss_pred C----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---cCcccchhhHHHHHhhhcCC---CChhHHHHHHHHHH
Q 009182 193 D----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPYYADILGAILPCISD---KEEKIRVVARETNE 262 (541)
Q Consensus 193 ~----~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~---~~l~p~l~~llp~ll~~l~d---~~~~iR~~A~~~~~ 262 (541)
+ ++.+.|.+...+.+++..++..+...++.++.+.| +.+ +|.++.-+.++|.. .++.--.+|.++..
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV---lP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI---YDKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH---HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee---hHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 1 35677777888999999999999999999999888 654 78888888888866 44443335556666
Q ss_pred HHHHhhcCCC-CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 009182 263 ELRAIKADPA-DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (541)
Q Consensus 263 ~L~~~i~~~~-~~~~l~~il~~L~~~L~~~~~~~R~aal~wL~~L~~ 308 (541)
.+.+.+...+ ....+..++..+.....-.+..-=..+++.+..+..
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 5555443321 112234445555555555555544555555555544
No 168
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=34.96 E-value=1.3e+02 Score=25.56 Aligned_cols=110 Identities=12% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHhhcCCCchhhhchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHH
Q 009182 138 ITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAI 217 (541)
Q Consensus 138 l~~L~~~~~~~l~~~lp~~L~~L~~lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al 217 (541)
+..+.......+.+++|.++. +|.|.|=-|...+...|..+-+.+ +|.+.+-.++.|..=+.-.+
T Consensus 18 ~~~L~~~~~~~i~p~lp~LL~----WLQD~NWPvA~~i~~~L~~~~~~l-----------~p~I~~vl~s~D~~W~ywil 82 (134)
T 3ut4_A 18 IDQLCKLIDNEIEPIIFDLLK----WLQDYNWPIAKDILPVVVLHQSIA-----------MPHILTILQGNDIMWKYWVI 82 (134)
T ss_dssp HHHHTTCCHHHHHHHHHHHHG----GGSCTTSTTHHHHHHHHHHTHHHH-----------HHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH----HHhcCCCccHHHHHHHHHHccHhh-----------HHHHHHHHHcCChHHHHHHH
Q ss_pred HHHHHHHhhcCcCcccchhhHHHHHhhhcCC-CChhHHHHHHHHHHHH
Q 009182 218 TWINEFVKLGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEEL 264 (541)
Q Consensus 218 ~wL~~l~~~~~~~l~p~l~~llp~ll~~l~d-~~~~iR~~A~~~~~~L 264 (541)
.++ ...........+.|.+......--.+ ...++.+.|.+.+...
T Consensus 83 ~~l--v~~~~~~~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 83 KLM--IPYLIYPNKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHH--GGGCCHHHHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHH--HHcCCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
No 169
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=31.94 E-value=3.1e+02 Score=27.37 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=27.3
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCh
Q 009182 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (541)
Q Consensus 278 ~~il~~L~~~L~~~~~~~R~aal~wL~~L~~~~~ 311 (541)
+..+..+...+.+.+..+|..++..|.+++....
T Consensus 99 ~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~ 132 (386)
T 2bnx_A 99 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 132 (386)
T ss_dssp SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred cHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCC
Confidence 3566788888888889999999998888887553
No 170
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=31.54 E-value=1.3e+02 Score=26.03 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHH-------------HhhhhhhcchhhhhcchhHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhchhhh
Q 009182 3 KWYSFLFEIIVEQF-------------LLYADLFFYSETILQQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFI 68 (541)
Q Consensus 3 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~ii~~vl~~l~D-~d~~VR~~A~eaL~~i~k~~~~~~~ 68 (541)
.-|+=-|+..+|++ +.+.|.+..-...-.+.+..+.+-++. +++.+-..|...+..++++|+..+-
T Consensus 11 ~~~~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh 90 (152)
T 3rru_A 11 DPYATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQ 90 (152)
T ss_dssp CGGGSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 34555566667665 556677766555555666777777764 6888888888888889998876442
Q ss_pred hHH--HHHHH-HHHHhhcC---CCHHHHHHH
Q 009182 69 IFF--NQIFD-ALCKLSAD---SDANVQSAA 93 (541)
Q Consensus 69 ~~~--~~i~~-~L~kl~~D---~d~~VR~~A 93 (541)
..+ .+.++ .|.+++++ ....||+-.
T Consensus 91 ~eiask~Fl~e~L~kl~~~~~~~~~~Vk~ki 121 (152)
T 3rru_A 91 SLIVKKEFVKENLVKLLNPRYNLPLDIQNRI 121 (152)
T ss_dssp HHHSSHHHHTTTTGGGGSGGGCCCHHHHHHH
T ss_pred HHHHhhHhHHHHHHHHhcCCCCCcHHHHHHH
Confidence 111 12333 25555553 234677666
No 171
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.36 E-value=1.8e+02 Score=28.90 Aligned_cols=106 Identities=12% Similarity=0.118 Sum_probs=63.5
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHhccccchhhhhhHHHHHHHhhc--cCChhhHHHHHHHHhcccCCh-----------
Q 009182 340 VLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCV--LLDAERVYRELSTILEGEADL----------- 406 (541)
Q Consensus 340 ~~~~L~~i~~~~~~f~~~m~~LL~~~~~~~~ll~~r~~~iir~Lc~--~l~~e~i~~~l~~il~~~~d~----------- 406 (541)
+.+++.++...+.|...|+..++.+--+.+..-++.....+.+||. .++++.+++.|..+++.-+|+
T Consensus 31 a~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~l~Dl~iDiP~a~~~l 110 (364)
T 3l6a_A 31 AVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYL 110 (364)
T ss_dssp HHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHHHCTTHHHHH
T ss_pred HHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhccccccHHHHH
Confidence 4455566654344666777777775543333334677778899996 678899999999998886553
Q ss_pred -HHHHHHHHHhHHhhcCcHhHHHHHHHHhhccCCcchhHHHHHHHHhhcc
Q 009182 407 -DFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCH 455 (541)
Q Consensus 407 -~f~~~~v~~L~~il~t~~el~~~R~~L~~~~~~~~~~~lf~~l~~~w~~ 455 (541)
.|+..+| .-=.++- .++-+.+++ ....++|..++..|+-
T Consensus 111 a~f~ar~i---~~~~l~~---~~l~~~l~~----G~~~~l~l~vl~~~~k 150 (364)
T 3l6a_A 111 AQFAARAI---ISELVSI---SELAQPLES----GTHFPLFLLCLQQLAK 150 (364)
T ss_dssp HHHHHHHH---HTTSSCH---HHHHHHHGG----GTTTTHHHHHHHHHHH
T ss_pred HHHHHHHH---HcCCCCH---HHHHHHhcc----cchHHHHHHHHHHHHH
Confidence 2222222 1112222 333444554 2345788888887744
No 172
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=29.54 E-value=84 Score=26.92 Aligned_cols=93 Identities=8% Similarity=0.035 Sum_probs=51.8
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc-------Ccccch
Q 009182 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-------QLVPYY 235 (541)
Q Consensus 163 lL~D~~~eVR~~a~~~L~~ll~~i~~~~~~~~~~ii~~Ll~~~~~~~~~vr~~al~wL~~l~~~~~~-------~l~p~l 235 (541)
-|.|..+.+-+...+.|..++.+-. .+.+.++..+.+.++...+.-|+.+++-+..+++..+. .+.+.+
T Consensus 13 ~L~~~k~~~S~~~I~~LT~~a~~~~----~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F 88 (145)
T 3d9j_A 13 SLNDYKPPISKAKMTQITKAAIKAI----KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRF 88 (145)
T ss_dssp GGGGSCSSCCHHHHHHHHHHHHHTG----GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHH
Confidence 4444432233333344555543322 24678888888888777888899999888888776543 344444
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHH
Q 009182 236 ADILGAILPCISDKEEKIRVVARE 259 (541)
Q Consensus 236 ~~llp~ll~~l~d~~~~iR~~A~~ 259 (541)
...++..+..+-...++.|....+
T Consensus 89 ~~~L~~~f~~~~~~~~~~r~kl~r 112 (145)
T 3d9j_A 89 SNNIISTFQNLYRCPGDDKSKIVR 112 (145)
T ss_dssp HHHHHHHHHHHTSSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344444333332334565544333
No 173
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=27.08 E-value=1.3e+02 Score=27.79 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH-HHHhhChHHH-hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-chhhHHH
Q 009182 280 ILSIATRQLSSEWEATRIEALHWIS-TLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQ 356 (541)
Q Consensus 280 il~~L~~~L~~~~~~~R~aal~wL~-~L~~~~~~~i-~~~l~~l~p~Ll~~L~D~~~~V~~~~~~~L~~i~~-~~~~f~~ 356 (541)
..+.+.+-..+++..+|.+++..-. +++......+ ....+.++..+-..+.|+..-|+...-|.|..++. +++.-..
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~ 188 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEK 188 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 4455556667788888888776221 2222221111 23567888888889999999999999999999993 4555555
Q ss_pred HHH
Q 009182 357 LVV 359 (541)
Q Consensus 357 ~m~ 359 (541)
++.
T Consensus 189 al~ 191 (235)
T 1t06_A 189 AVE 191 (235)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 174
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=26.20 E-value=80 Score=25.91 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=24.7
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHhcc-cCChHH
Q 009182 376 GALIIRRLCVLLDAERVYRELSTILEG-EADLDF 408 (541)
Q Consensus 376 ~~~iir~Lc~~l~~e~i~~~l~~il~~-~~d~~f 408 (541)
...+.++||..+++..-++.|+..+.. ...+.|
T Consensus 15 p~~~r~~L~~~LD~~~~W~~La~~i~~~~~~~ky 48 (113)
T 2a9i_A 15 NVGILRKLSDFIDPQEGWKKLAVAIKKPSGDDRY 48 (113)
T ss_dssp CHHHHHHHHHHHSGGGHHHHHHHHCBCTTSSBSS
T ss_pred CHHHHHHHHHHhCCcccHHHHHHHHcCccccCCC
Confidence 345788999999999899999887665 333444
No 175
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=25.61 E-value=2.4e+02 Score=22.00 Aligned_cols=69 Identities=29% Similarity=0.282 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCCCH--HHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCC--HHHHHHHHHHHHHh
Q 009182 71 FNQIFDALCKLSADSDA--NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLN--PYVRQFLVGWITVL 141 (541)
Q Consensus 71 ~~~i~~~L~kl~~D~d~--~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~--~~vR~~a~~~l~~L 141 (541)
++++...|-+..+|+.- ++|.+| ++.+.+.++- ++...-...-|-.|-+..+|+| .++|..+=+.++.|
T Consensus 12 ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~--~~~~vRAA~aIs~LDeISnDPNmP~h~RT~IW~ivS~L 85 (89)
T 2qsb_A 12 FNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQEN--ESLDLRCATVLSMLDEMANDPNVPAHGRTDLYTIISKL 85 (89)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTT--SCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 34556666667777753 899999 5544443210 0001112233566666666655 46665544444443
No 176
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.80 E-value=1.6e+02 Score=25.37 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=54.7
Q ss_pred hhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCchhhhchH--HHHHH-HHHHcCCC---CHHHHHHHHHHHHHHHHHh
Q 009182 114 EFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLSDS---SHEIRQQADSALWEFLQEI 186 (541)
Q Consensus 114 ~~iP~L~e~l~d-~~~~vR~~a~~~l~~L~~~~~~~l~~~lp--~~L~~-L~~lL~D~---~~eVR~~a~~~L~~ll~~i 186 (541)
.-+..+..++.. .|+.+...++..+..+.+..|..+-..+- +|+.. |.+++++. ..+||+.+...+..--..+
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 336667777774 68888888999999988888877655443 55654 56666653 4579999988888887777
Q ss_pred cCC
Q 009182 187 KNS 189 (541)
Q Consensus 187 ~~~ 189 (541)
+..
T Consensus 133 ~~~ 135 (152)
T 3rru_A 133 PGG 135 (152)
T ss_dssp SSS
T ss_pred CCC
Confidence 643
No 177
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=21.43 E-value=1.1e+02 Score=31.83 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhc-h-hhhhHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHH
Q 009182 44 QDSRVRYYACEALYNIAKVVR-G-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV 100 (541)
Q Consensus 44 ~d~~VR~~A~eaL~~i~k~~~-~-~~~~~~~~i~~~L~kl~~D~d~~VR~~A-~~L~~l~ 100 (541)
+|+.+=..||.-++++++... | .+...+ ..=+.+.++++++|++||..| .++.+++
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 478888888888888887753 2 222221 123445678999999999999 7766654
No 178
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=21.40 E-value=3e+02 Score=21.65 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhhcCCCH--HHHHHH-HHHHHHHhHhhcccchhcHhhhHHHHHHHhcCCC--HHHHHHHHHHHHHhhc
Q 009182 69 IFFNQIFDALCKLSADSDA--NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLN--PYVRQFLVGWITVLDS 143 (541)
Q Consensus 69 ~~~~~i~~~L~kl~~D~d~--~VR~~A-~~L~~l~kdi~~e~~~~~l~~~iP~L~e~l~d~~--~~vR~~a~~~l~~L~~ 143 (541)
..++++...|-+.++|+.- ++|.+| ++.+.+.++- ++...-...-|-.|-+..+|+| .++|..+=+.++.|-.
T Consensus 14 ~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~--~~~~vRAAtAIs~LDeISnDPNmP~htRT~IW~ivS~LEt 91 (94)
T 2qzg_A 14 DKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEE--QELIVRSATAIQYLDDISEDPNMPIHTRTQIWGIVSELET 91 (94)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTT--SCHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc
Confidence 4456667777777877753 899998 5543332210 0001112233666666666665 4666655555555543
No 179
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=21.33 E-value=1.2e+02 Score=33.33 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhchHHHHHHH
Q 009182 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (541)
Q Consensus 126 ~~~~vR~~a~~~l~~L~~~~~~~l~~~lp~~L~~L 160 (541)
.++.||++|++++... ++.++..|+|.+++.|
T Consensus 121 ~~~~VR~yAV~~L~~~---~de~L~~YLlQLVQAL 152 (696)
T 2x6h_A 121 THPQVRKYAVSRLAQA---PDEDLLLYLLQLVQAL 152 (696)
T ss_dssp CCHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHhC---ChHHHHHHHHHHHHHH
Confidence 6799999999999874 6678999999887743
No 180
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=21.03 E-value=1.5e+02 Score=24.39 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhhccccchHHHHH
Q 009182 470 YHHASAVIQSLVEEDLNVKFLVQ 492 (541)
Q Consensus 470 y~~a~~ll~~~~~~~~~~~~l~~ 492 (541)
=..+..++..|++-+.|+.+|++
T Consensus 77 gSPSr~LL~~~~~~g~Tl~~L~~ 99 (117)
T 2g7r_A 77 GSPSLCLLKLMGEKGCTVTELSD 99 (117)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHH
T ss_pred CChHHHHHHHHHHcCCcHHHHHH
Confidence 34455677788888999999988
Done!