BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009183
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
D+ A+ YG +E+ R+ VE G V +PD L WAA+NN D+ +Y I G V+
Sbjct: 12 DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 89 TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
+ T LHWA +G +++ L++ GA D G +H+AAQ+G TS + +++A
Sbjct: 71 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
K D D D G +PL WAAY+ + D RLLL + S DK T LHWA L GN
Sbjct: 131 KGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189
Query: 206 VEACTVLVHAG 216
++L+ AG
Sbjct: 190 TTVISLLLEAG 200
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 99.4 bits (246), Expect = 4e-21, Method: Composition-based stats.
Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D GY +H+AA+ G + ++ K AD +A D +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKD 67
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA +G + + +LL A +DKDG TPLH AA G++E VL+ AG
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-- 125
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
++ A+DK G TP LA +GH +A L A
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +GY L AA +I + ++ G DVNA D +G T LH AA G + +
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 83
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++ GA V A D GY +H+AA+ G + ++ K AD +A D G++P A
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 169 YKGFADTIRLL 179
+G D +L
Sbjct: 143 REGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 98.6 bits (244), Expect = 7e-21, Method: Composition-based stats.
Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D GY +H+AA+ G + ++ K AD +A D +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKD 67
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA +G + + +LL A +DKDG TPLH AA G++E VL+ AG
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-- 125
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
++ A+DK G TP LA D G+ +A L A
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 82.8 bits (203), Expect = 4e-16, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +GY L AA +I + ++ G DVNA D +G T LH AA G + +
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 83
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++ GA V A D GY +H+AA+ G + ++ K AD +A D G++P A
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 143 DNGNEDIAEVL 153
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 96.3 bits (238), Expect = 4e-20, Method: Composition-based stats.
Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + +I +G DVNA DN G T LH AAV G + + +VL+++GA V+AADV+G+ +H+A
Sbjct: 28 DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ KY AD +A D G +PLH AA +G + + +LL A QDK G
Sbjct: 88 AMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGN 205
T + GN
Sbjct: 147 KTAFDISIDNGN 158
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G +H+AA G + ++ K+ AD DA+D
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVY 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA G + + +LL A D G TPLH AA G++E VL+ G
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G +++R + +GA V+ D G L AA++ +I + ++ HG DV+A
Sbjct: 18 LLEAARAGQDDEVRILIA-NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D G T LH AA+ G + + +VL++ GA V A D+ G +H+AA G + ++ KY
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIV-EVLLKY 135
Query: 150 HADYDASDNEGRS 162
AD +A D G++
Sbjct: 136 GADVNAQDKFGKT 148
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 19 NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQY 78
N DN +T + A+ G E + ++ GA V D G+ L AA+ +I +
Sbjct: 41 NAVDN-TGLTPLHLAAVSGHLEIVEVLLKH-GADVDAADVYGFTPLHLAAMTGHLEIVEV 98
Query: 79 IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
++ +G DVNA D G T LH AA G + + +VL++ GA V A D G A ++ G
Sbjct: 99 LLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA DN G T LH AA G + + +VL+++GA V+A+DV GY +H+A
Sbjct: 28 DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A +G + ++ K AD +A D++G +PLH AA G+ + + +LL A QDK G
Sbjct: 88 AYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V AAD G +H+AA G + ++ K+ AD DASD
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVF 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AAY G + + +LL A D DG TPLH AA G +E VL+ G
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G L AA + +I + ++ HG DV+A+D G T LH AA G + +
Sbjct: 36 NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++NGA V A D G +H+AA++G + ++ K+ AD +A D G++ +
Sbjct: 96 VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV-EVLLKHGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 34/202 (16%)
Query: 44 KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT-------------- 89
K + G S P NGY L AA N ++A+ ++ +GG NA
Sbjct: 196 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255
Query: 90 -------------------DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAV 130
+ +G T LH A G + VADVL+++G V+A GY +
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 315
Query: 131 HVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD 190
HVA+ YG + ++ ++ AD +A G SPLH AA +G D + LLL AS
Sbjct: 316 HVASHYGNIKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Query: 191 KDGCTPLHWAALRGNVEACTVL 212
DG TPL A G + VL
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVL 396
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 7/236 (2%)
Query: 19 NQNDNQAAV---TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADI 75
N N N A T + A+ G E + +E++ AS + G+ L AA +
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRV 161
Query: 76 AQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQ 135
A+ +++ NA NG T LH A ++ + +L+ G + +GY +H+AA+
Sbjct: 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221
Query: 136 YGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCT 195
Q ++ +Y +A +G +PLH AA +G A+ + LLL + A+ +K G T
Sbjct: 222 QNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 280
Query: 196 PLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
PLH A G+V VL+ G + A + G TP +A G+ ++ +L Q
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 5/223 (2%)
Query: 28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
T + A+ YG +E D A + NG L A +N DI + ++ GG +
Sbjct: 148 TPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 88 ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
+ NG T LH AA + + VA L+Q G A V G +H+AAQ G + +++
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 148 KYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE 207
K A+ + + G +PLH A +G +L+ + G TPLH A+ GN++
Sbjct: 267 K-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 325
Query: 208 ACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQ-VALYLSN 249
L+ + ++ AK K G +P A +GH V L L N
Sbjct: 326 LVKFLLQ--HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 3/172 (1%)
Query: 64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
L A+ I + ++ G N ++ +T LH AA G VA L+QN A+V A
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 124 VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD 183
+H AA+ G T+ + ++ + +A+ + + G +PLH AA +G +T+ LL ++
Sbjct: 78 KDDQTPLHCAARIGHTNMVK-LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235
ASQ K G TPLH AA G V +L+ A K GLTP +A
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPLHVA 186
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 4/229 (1%)
Query: 21 NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII 80
N + V +A ++ K++ ++ A V+ + L AA ++ + ++
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100
Query: 81 DHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
++ + N G T LH AA G + L++ A G+ +HVAA+YG+
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
++ + A +A+ G +PLH A + D ++LLL R S +G TPLH A
Sbjct: 161 VAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219
Query: 201 ALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQ-VALYLS 248
A + VE L+ G A+ G+TP LA +GH + VAL LS
Sbjct: 220 AKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAAQEGHAEMVALLLS 266
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
T + AS YG+ KL KF+ + A V+ GY L AA DI ++ +G N
Sbjct: 313 TPLHVASHYGNI-KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Query: 88 ATDNNGQTALHWAAVRGSIAVADVL 112
++G T L A G I+V DVL
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNATDN+G T LH AA G + + +VL++NGA V A+D+ G +H+A
Sbjct: 28 DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ K+ AD +A DN+G +PLH AA G + + +LL A QDK G
Sbjct: 88 AATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 82.4 bits (202), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +GY L AA N +I + ++ +G DVNA+D G T LH AA G + +
Sbjct: 36 NGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL+++GA V A D G+ +H+AA+YG + ++ K+ AD +A D G++ +
Sbjct: 96 VEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIV-EVLLKHGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D GY +H+AA G + ++ K AD +ASD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLT 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA G + + +LL A D DG TPLH AA G++E VL+ G
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 93.2 bits (230), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G+ L++NGA V A+D G +H AA+ G + +++K AD +A D++
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISK-GADVNAKDSD 69
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
GR+PLH+AA +G + ++LL+ + A +D DG TPLH+AA G+ E +L+ G
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA-- 127
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
++ D G TP LA + G+ ++ L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G+ ++++ +E +GA V+ D +G L +AA +I + +I G DVNA
Sbjct: 8 LIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D++G+T LH+AA G + +L+ GA V A D G +H AA+ G + +++K
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK- 125
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
AD + SD++GR+PL A G + ++LL
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 40 EKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHW 99
+++ K + GA V+ D +G L +AA +I + +I G DVN +D++G+T L
Sbjct: 83 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL 142
Query: 100 AAVRGSIAVADVLVQNGARVE 120
A G+ + +L + G +E
Sbjct: 143 AREHGNEEIVKLLEKQGGWLE 163
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D GY +H+AA+ G + ++ K AD +A D +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKD 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA +G + + +LL A +DKDG TPLH AA G++E VL+ AG
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 86.7 bits (213), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D +G T LH AA G + + +VL++ GA V A D GY +H+A
Sbjct: 28 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A+ G + ++ K AD +A D +G +PLH AA +G + + +LL A QDK G
Sbjct: 88 AREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 79.3 bits (194), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD +A D +G +PLH AA +G + + +LL A +DKD
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
G TPLH AA G++E VL+ AG ++ AKDK G TP LA +GH ++ L A
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Score = 78.6 bits (192), Expect = 9e-15, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +GY L AA +I + ++ G DVNA D +G T LH AA G + +
Sbjct: 36 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++ GA V A D GY +H+AA+ G + ++ K AD +A D G++ +
Sbjct: 96 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151
NG+T LH AA G + V +L++ GA V A D +G +H+AA+ G + ++ + A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGA 59
Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
D +A D GR+PLH AA G + ++LLL A +DK+G TPLH AA G++E +
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 212 LVHAG 216
L+ AG
Sbjct: 120 LLEAG 124
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
NG L AA N ++ + +++ G DVNA D NG+T LH AA G + V +L++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRL 178
V A D +G +H+AA+ G + ++ + AD +A D GR+PLH AA G + ++L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 179 LL 180
LL
Sbjct: 120 LL 121
Score = 82.4 bits (202), Expect = 6e-16, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184
+G +H+AA+ G + ++ + AD +A D GR+PLH AA G + ++LLL A
Sbjct: 1 NGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
+DK+G TPLH AA G++E +L+ AG ++ AKDK G TP LA GH +V
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 245 LYLSNA 250
L A
Sbjct: 118 KLLLEA 123
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 44 KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103
K + E GA V+ D NG L AA N ++ + +++ G DVNA D NG+T LH AA
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78
Query: 104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ 138
G + V +L++ GA V A D +G +H+AA+ G
Sbjct: 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 113
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 44 KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103
K + E GA V+ D NG L AA N ++ + +++ G DVNA D NG+T LH AA
Sbjct: 52 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 104 GSIAVADVLVQNGA 117
G + V +L++ GA
Sbjct: 112 GHLEVVKLLLEAGA 125
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 89.0 bits (219), Expect = 7e-18, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D++G+T LH AA++G + + +VL+++GA V AAD G +H+A
Sbjct: 28 DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A YG + ++ K AD +A+D G +PLH AA G + + +LL A QDK G
Sbjct: 88 ALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 86.3 bits (212), Expect = 4e-17, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +G L AA+ +I + ++ HG DVNA D G T LH AA+ G + +
Sbjct: 36 NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++NGA V A D +G+ +H+AA G + ++ KY AD +A D G++ +
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV-EVLLKYGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G +H+AA G + ++ K+ AD +A+D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIV-EVLLKHGADVNAADKM 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA G + + +LL A D G TPLH AA G++E VL+ G
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 3/199 (1%)
Query: 37 GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
G E+L++ + D + +R D + AL WA +I ++++ G VN D+ G +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
LH AA G + L+ GA+V A + +G +H AA + ++ + A+ DA
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
D+ + +H AA KG I +LL+ AS QD +G TPLH A VE +LV G
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 217 TKQELTAKDKAGLTPTQLA 235
+ K++ TP Q+A
Sbjct: 196 ASIYIENKEEK--TPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 3/199 (1%)
Query: 37 GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
G E+L++ + D + +R D + AL WA +I ++++ G VN D+ G +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 77
Query: 97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
LH AA G + L+ GA+V A + +G +H AA + ++ + A+ DA
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 136
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
D+ + +H AA KG I +LL+ AS QD +G TPLH A VE +LV G
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196
Query: 217 TKQELTAKDKAGLTPTQLA 235
+ K++ TP Q+A
Sbjct: 197 ASIYIENKEEK--TPLQVA 213
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 87.8 bits (216), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G+ L++NGA V A+D G +H AA+ G + +++K AD +A D++
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSD 69
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
GR+PLH AA G + ++LL+ + A +D DG TPLH AA G+ E +L+ G
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-- 127
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
++ D G TP LA + G+ +V L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G+ ++++ +E +GA V+ D +G L AA N ++ + +I G DVNA
Sbjct: 8 LIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D++G+T LH AA G V +L+ GA V A D G +H AA+ G + +++K
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK- 125
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
AD + SD++GR+PL A G + ++LL
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 44 KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103
K + GA V+ D +G L AA N ++ + +I G DVN +D++G+T L A
Sbjct: 87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 104 GSIAVADVLVQNGARVE 120
G+ V +L + G +E
Sbjct: 147 GNEEVVKLLEKQGGWLE 163
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 86.3 bits (212), Expect = 4e-17, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G+ L++NGA A+D G +H AA+ G + +++K AD +A D++
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK-GADPNAKDSD 69
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
GR+PLH+AA G + ++LLL + A +D DG TPLH+AA G+ E +L+ G
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA-- 127
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
+ D G TP LA + G+ ++ L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G+ ++++ +E +GA + D +G L +AA N +I + ++ G D NA
Sbjct: 8 LIEAAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D++G+T LH+AA G + +L+ GA A D G +H AA+ G + +++K
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK- 125
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
AD + SD++GR+PL A G + ++LL
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 6 IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQ 65
++++ S A PN +D + T + A+ G E + K + GA + D +G L
Sbjct: 53 VKLLLSKGADPNAKDSDGR---TPLHYAAENGHKE-IVKLLLSKGADPNAKDSDGRTPLH 108
Query: 66 WAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE 120
+AA N +I + ++ G D N +D++G+T L A G+ + +L + G +E
Sbjct: 109 YAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
+L+ NGA V A D +G +H+AA GQ + ++ K AD +ASD+ G +PLH AAY
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + + +LL A D+ G TPLH AAL G +E VL+ G ++ A+D GLT
Sbjct: 83 GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA--DVNAQDALGLT 140
Query: 231 PTQLAYDKGHRQVALYL 247
++ ++G +A L
Sbjct: 141 AFDISINQGQEDLAEIL 157
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+A G +++R + +GA V+ D NG L AA N +I + ++ +G DVNA+
Sbjct: 10 LLEAAAAGQDDEVRILMA-NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D+ G T LH AA G + + +VL+++GA V A D G+ +H+AA GQ + ++ K+
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIV-EVLLKH 127
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
AD +A D G + + +G D +L
Sbjct: 128 GADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 2 ASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGY 61
A+ ++E+V + + A +T + A+ G E + ++ GA V+ D G+
Sbjct: 48 ANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH-GADVNAYDRAGW 106
Query: 62 FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVL 112
L AAL+ +I + ++ HG DVNA D G TA + +G +A++L
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 3/199 (1%)
Query: 37 GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
G ++L++ + D + +R D + AL WA +I ++++ G VN D+ G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
LH AA G + L+ GA V A + +G +H AA + ++ + A+ DA
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
D+ + +H AA KG + +LLF AS QD +G TPLH A VE LV G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 217 TKQELTAKDKAGLTPTQLA 235
+ K++ TP Q+A
Sbjct: 196 ASIYIENKEEK--TPLQVA 212
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 3/199 (1%)
Query: 37 GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
G ++L++ + D + +R D + AL WA +I ++++ G VN D+ G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
LH AA G + L+ GA V A + +G +H AA + ++ + A+ DA
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
D+ + +H AA KG + +LLF AS QD +G TPLH A VE LV G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 217 TKQELTAKDKAGLTPTQLA 235
+ K++ TP Q+A
Sbjct: 196 ASIYIENKEEK--TPLQVA 212
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 36/170 (21%)
Query: 31 FSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90
+ASA D ++ K + GA V+ + NG L +AA N +IA +++ G + +A D
Sbjct: 79 IAASAGXD--EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 91 NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH 150
+ TA+H AA +G++ + HI+ Y
Sbjct: 137 HYDATAMHRAAAKGNLKMV----------------------------------HILLFYK 162
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
A + D EG +PLH A + + + L+ + AS ++K+ TPL A
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 85.1 bits (209), Expect = 8e-17, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D G T LH AA G + + +VL++NGA V A D G +H+A
Sbjct: 28 DEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A+ G + ++ KY AD +A D G +PLH AA G + + +LL A QDK G
Sbjct: 88 AKRGHLEIV-EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D +G +H+AA+ G + ++ K AD +A D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDFS 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA +G + + +LL A D G TPLH AA G++E VL+ G
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 72.8 bits (177), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G L AA +I + ++ +G DVNA D +G T LH AA RG + +
Sbjct: 36 NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++ GA V A D G +H+AA G + ++ KY AD +A D G++ +
Sbjct: 96 VEVLLKYGADVNADDTIGSTPLHLAADTGHLEIV-EVLLKYGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G D NA D+ G+T LH AA G + + +VL++NGA V A D +G +H+A
Sbjct: 16 DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLA 75
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ KY AD +A D G +PL+ AAY G + + +LL A QDK G
Sbjct: 76 ASLGHLEIV-EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFG 134
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 135 KTAFDISIDIGNEDLAEIL 153
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA + D G L AA +I + ++ +G DVNA D NG T LH AA G + +
Sbjct: 24 NGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEI 83
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++ GA V A D G +++AA +G + ++ K+ AD +A D G++ +
Sbjct: 84 VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIV-EVLLKHGADVNAQDKFGKTAFDISI 142
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 143 DIGNEDLAEIL 153
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD +A D+ GR+PLH AA G + + +LL A D +
Sbjct: 9 AARAGQDDEVRILMAN-GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
G TPLH AA G++E VL+ G ++ AKD G+TP LA GH ++
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGA--DVNAKDATGITPLYLAAYWGHLEI 116
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G+ L++NGA V A+D G +H+AA+ G + ++++ AD +A D++
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSD 69
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G++PLH AA G + ++LLL + A +D DG TPLH AA G+ E +L+ G
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA-- 127
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
+ D G TP LA + G+ +V L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G+ ++++ +E +GA V+ D +G L AA N ++ + ++ G D NA
Sbjct: 8 LIEAAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D++G+T LH AA G V +L+ GA A D G +H+AA+ G + ++++
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ- 125
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
AD + SD++GR+PL A G + ++LL
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 6 IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQ 65
++++ S A PN +D + + +A +++ K + GA + D +G L
Sbjct: 53 VKLLLSQGADPNAKDSDGKTPL----HLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 108
Query: 66 WAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE 120
AA N ++ + ++ G D N +D++G+T L A G+ V +L + G +E
Sbjct: 109 LAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G+ +H+AA +G + ++ K AD +A D+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSL 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA +G + + +LL A D G TPLH AA RG++E VL+ G
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D G T LH AA G + + +VL++NGA V A D G +H+A
Sbjct: 28 DEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A+ G + ++ K AD +ASD+ G +PLH AA +G + + +LL A QDK G
Sbjct: 88 ARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G+ L AA +I + ++ +G DVNA D+ G T LH AA RG + +
Sbjct: 36 NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++NGA V A+D HG+ +H+AA+ G + ++ K AD +A D G++ +
Sbjct: 96 VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIV-EVLLKNGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
+L+ NGA V AADV G+ +H+AA +G + ++ K AD +A D G +PLH AA+
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHF 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + + +LL A +D +G TPLH AA RG++E VL+ G ++ A+DK G T
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 231 PTQLAYDKGHRQVA 244
++ + G+ +A
Sbjct: 149 AFDISINNGNEDLA 162
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D G T LH AA G + + +VL++NGA V A D G +H+A
Sbjct: 28 DEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A +G + ++ K AD +A D+ G +PLH AA +G + + +LL A QDK G
Sbjct: 88 AHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISINNGNEDLAEIL 165
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G+ L AA +I + ++ +G DVNA D G T LH AA G + +
Sbjct: 36 NGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++NGA V A D +G +H+AA G + ++ KY AD +A D G++ +
Sbjct: 96 VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIV-EVLLKYGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 NNGNEDLAEIL 165
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 57/104 (54%)
Query: 34 SAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNG 93
+AY ++ + + ++GA V+ D G L AA +I + ++ +G DVNA D+NG
Sbjct: 54 AAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNG 113
Query: 94 QTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
T LH AA RG + + +VL++ GA V A D G A ++ G
Sbjct: 114 ITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNG 157
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
T + A+ +G E + ++ +GA V+ D NG L AA +I + ++ +G DVN
Sbjct: 82 TPLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 88 ATDNNGQTALHWAAVRGSIAVADVL 112
A D G+TA + G+ +A++L
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNATD +G T LH AA G + + +VL+++GA V A D+ G +H+A
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ K+ AD +A D G +PLH AA G + + +LL A QDK G
Sbjct: 88 ALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 79.7 bits (195), Expect = 3e-15, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G +H+AA YG + ++ K+ AD +A D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIM 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA G + + +LL A D G TPLH AA+ G++E VL+ G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +G L AA +I + ++ HG DVNA D G T LH AA+ G + +
Sbjct: 36 NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL+++GA V A D G +H+AA G + ++ K+ AD +A D G++ +
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV-EVLLKHGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNATD G T LH AA G + + +VL++ GA V A D +G +H+A
Sbjct: 28 DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ K+ AD +A D EG +PLH AAY G + + +LL A QDK G
Sbjct: 88 ADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 83.2 bits (204), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G+ +H+AA+ G + ++ KY AD +A DN
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIV-EVLLKYGADVNAWDNY 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA G + + +LL A +D +G TPLH AA G++E VL+ G
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G+ L AA +I + ++ +G DVNA DN G T LH AA G + +
Sbjct: 36 NGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL+++GA V A D G+ +H+AA G + ++ KY AD +A D G++ +
Sbjct: 96 VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV-EVLLKYGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNATD +G T LH AA G + + +VL+++GA V A D+ G +H+A
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ K+ AD +A D G +PLH AA G + + +LL A QDK G
Sbjct: 88 ALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G +H+AA YG + ++ K+ AD +A D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIX 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA G + + +LL A D G TPLH AA+ G++E VL+ G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +G L AA +I + ++ HG DVNA D G T LH AA+ G + +
Sbjct: 36 NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL+++GA V A D G +H+AA G + ++ K+ AD +A D G++ +
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV-EVLLKHGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D +G T LH AA G + + +VL++NGA V A D G + +A
Sbjct: 28 DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A +G + ++ K AD +A+D EG +PLH AA G + + +LL A QDK G
Sbjct: 88 ALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +G+ L AA N +I + ++ +G DVNA D+ G T L AA+ G + +
Sbjct: 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++NGA V A D+ G+ +H+AA +G + ++ K AD +A D G++ +
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV-EVLLKNGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
+L+ NGA V A D G+ +H+AA G + ++ K AD +A D+ G +PL AA
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + + +LL A D +G TPLH AA+ G++E VL+ G ++ A+DK G T
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA--DVNAQDKFGKT 148
Query: 231 PTQLAYDKGHRQVA 244
++ D G+ +A
Sbjct: 149 AFDISIDNGNEDLA 162
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 48 EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA 107
++GA V+ D G L+ AAL +I + ++ +G DVNA D G T LH AA+ G +
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 108 VADVLVQNGARVEAADVHGYRAVHVAAQYG 137
+ +VL++NGA V A D G A ++ G
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
+ A +T + A+ +G E + ++ +GA V+ D G+ L AA+ +I + ++ +
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVL 112
G DVNA D G+TA + G+ +A++L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 33/247 (13%)
Query: 31 FSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90
+A + GD E++ + +E GA ++ + +G AL A +++ D+ ++++++G ++N D
Sbjct: 45 LAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 91 NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH 150
N G LH AA G + +A+ L+ GA V A + G + +A + L + V +
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 151 ADYDASDNE--------------------------GRSPLHWAAYKGFADTIRLLLFRDA 184
D +A+ E G + LH AA KG+ + ++LL+
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
+D DG TPLH AA G EAC +LV ++ A +K G Q A+D +
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVG----QTAFDVADEDIL 277
Query: 245 LYLSNAQ 251
YL Q
Sbjct: 278 GYLEELQ 284
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 82.0 bits (201), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G +H+ G + ++ KY AD +ASD
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEII-EVLLKYAADVNASDKS 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AAY+G + + +LL A D G TPLH AA G++E VL+ G
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G L N +I + ++ + DVNA+D +G T LH AA RG + +
Sbjct: 36 NGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++ GA V A D GY +H+AA+ G + ++ KY AD +A D G++ +
Sbjct: 96 VEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIV-EVLLKYGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D G T LH G + + +VL++ A V A+D G+ +H+A
Sbjct: 28 DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ KY AD +A D +G +PLH AA G + + +LL A QDK G
Sbjct: 88 AYRGHLEIV-EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA+D+ G T LH AA G + + +VL++NGA V A D G +H+A
Sbjct: 28 DEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ K AD +A+D+ G +PLH AA G + + +LL A QDK G
Sbjct: 88 ADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 79.0 bits (193), Expect = 6e-15, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A+D G+ +H+AA +G + ++ K AD +A D+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSL 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
G +PLH AA +G + + +LL A D +G TPLH AA G++E VL+ G
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
++ A+DK G T ++ D G+ +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G+ L AA +I + ++ +G DVNA D+ G T LH AA RG + V
Sbjct: 36 NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEV 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+VL++NGA V A D +G+ +H+AA G + ++ K+ AD +A D G++ +
Sbjct: 96 VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIV-EVLLKHGADVNAQDKFGKTAFDISI 154
Query: 169 YKGFADTIRLL 179
G D +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D+ G T LH AA G + +VL+++GA V A D G+ +H+A
Sbjct: 28 DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
A G + ++ KY AD +A D G +PLH AA +G + + +LL A QDK G
Sbjct: 88 ADNGHLEIVE-VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
+L+ NGA V A D G +H+AA G + ++ K+ AD +A D +G +PLH AA
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVE-VLLKHGADVNARDTDGWTPLHLAADN 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + + +LL A QD G TPLH AA RG++E VL+ G ++ A+DK G T
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 231 PTQLAYDKGHRQVALYLS 248
++ D G+ +A L
Sbjct: 149 AFDISIDNGNEDLAEILQ 166
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G +++R + +GA V+ D G L AA +I + ++ HG DVNA
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D +G T LH AA G + + +VL++ GA V A D +G +H+AA G + ++ K+
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVE-VLLKH 135
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
AD +A D G++ + G D +L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 91/202 (45%), Gaps = 4/202 (1%)
Query: 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
GA++ + L AA NN + +Y+I G V+ D G T LH AA +G V
Sbjct: 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVV 93
Query: 110 DVLVQNGAR-VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
L+ NG V D G+ + A +Y + +++K +D + DNE LHWAA
Sbjct: 94 QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAA 152
Query: 169 YKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
+ G D +LL + G +PLH AA R N C VL ++T K+K G
Sbjct: 153 FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA-RENRYDCVVLF-LSRDSDVTLKNKEG 210
Query: 229 LTPTQLAYDKGHRQVALYLSNA 250
TP Q A AL +S A
Sbjct: 211 ETPLQCASLNSQVWSALQMSKA 232
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 3/191 (1%)
Query: 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
N L AA DI ++ G +++ + +T L AA + L++ GA
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRL 178
V+ D G +H+AA+ G + ++++ D + D+ G +P+ WA D ++L
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 179 LLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQL-AYD 237
LL + + +D + LHWAA G V+ +L+ A K +L A + G +P + A +
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA--KCDLHAVNIHGDSPLHIAARE 187
Query: 238 KGHRQVALYLS 248
+ V L+LS
Sbjct: 188 NRYDCVVLFLS 198
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 34/174 (19%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
A+ G +E ++ + V+ D G+ + WA D+ + ++ G D+N DN
Sbjct: 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143
Query: 93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
LHWAA G + +A++L+ + A ++HG
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG-------------------------- 177
Query: 153 YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
SPLH AA + D + L L RD+ ++K+G TPL A+L V
Sbjct: 178 --------DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEAC 209
H ++ RSPLH AA G D +L+ A+ +D TPL AA ++EA
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 210 TVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY-LSNAQ 251
L+ AG + KD G T LA KGH +V Y LSN Q
Sbjct: 61 KYLIKAGAL--VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Query: 79 IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVAAQYG 137
++D G D N+ DN G+T LH A ++ V +L++N A A +H G + +AA+
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
+ ++ AD +A+DN G++ LHWAA + + +LL A++ QD TPL
Sbjct: 130 IEGMVEDLI-TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Query: 198 HWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
AA G+ EA L+ +E+T D P +A ++ H + L
Sbjct: 189 FLAAREGSYEASKALLDNFANREIT--DHMDRLPRDVASERLHHDIVRLL 236
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Query: 70 NNFADIAQYIID---HGGDVNAT-DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
NN AQ I D G ++NAT D G+T+LH AA A L+ GA + D
Sbjct: 24 NNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT 83
Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
G +H A ++ + +A ++G +PL AA + L+ DA
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 143
Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG 239
D G T LHWAA N EA +L+ ++ A+D TP LA +G
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRD--AQDDKDETPLFLAAREG 195
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 50 GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
GAS+ ++ D G AL AA + +D A+ +++ D N DN G+T LH A + V
Sbjct: 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
+L++N A A +H G + +AA+ L ++ HAD +A D+ G+S LHWA
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWA 164
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
A D +LL A++ Q+ TPL AA G+ E VL+ +++T D
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 222
Query: 228 GLTPTQLAYDKGHRQVALYL 247
P +A ++ H + L
Sbjct: 223 DRLPRDIAQERMHHDIVRLL 242
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 50 GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
GAS+ ++ D G AL AA + +D A+ +++ D N DN G+T LH A + V
Sbjct: 47 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 106
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
+L++N A A +H G + +AA+ L ++ HAD +A D+ G+S LHWA
Sbjct: 107 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWA 165
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
A D +LL A++ Q+ TPL AA G+ E VL+ +++T D
Sbjct: 166 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 223
Query: 228 GLTPTQLAYDKGHRQVALYL 247
P +A ++ H + L
Sbjct: 224 DRLPRDIAQERMHHDIVRLL 243
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 50 GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
GAS+ ++ D G AL AA + +D A+ +++ D N DN G+T LH A + V
Sbjct: 46 GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
+L++N A A +H G + +AA+ L ++ HAD +A D+ G+S LHWA
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWA 164
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
A D +LL A++ Q+ TPL AA G+ E VL+ +++T D
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 222
Query: 228 GLTPTQLAYDKGHRQVALYL 247
P +A ++ H + L
Sbjct: 223 DRLPRDIAQERMHHDIVRLL 242
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 50 GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
GAS+ ++ D G AL AA + +D A+ +++ D N DN G+T LH A + V
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
+L++N A A +H G + +AA+ L ++ HAD +A D+ G+S LHWA
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWA 132
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
A D +LL A++ Q+ TPL AA G+ E VL+ +++T D
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 190
Query: 228 GLTPTQLAYDKGHRQVALYL 247
P +A ++ H + L
Sbjct: 191 DRLPRDIAQERMHHDIVRLL 210
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
GR+PLH AA G + ++LLL A +DK+G TPLH AA G++E +L+ AG
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-- 59
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
++ AKDK G TP LA GH +V L A
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184
+G +H+AA+ G + ++ + AD +A D GR+PLH AA G + ++LLL A
Sbjct: 1 NGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
+DK+G TPLH AA G++E +L+ AG
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
NG L AA N ++ + +++ G DVNA D NG+T LH AA G + V +L++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 119 VEAADVHGYRAVHVAAQYGQ 138
V A D +G +H+AA+ G
Sbjct: 61 VNAKDKNGRTPLHLAARNGH 80
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 44 KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103
K + E GA V+ D NG L AA N ++ + +++ G DVNA D NG+T LH AA
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78
Query: 104 GSIAVADVLVQNGA 117
G + V +L++ GA
Sbjct: 79 GHLEVVKLLLEAGA 92
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 192 DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
+G TPLH AA G++E +L+ AG ++ AKDK G TP LA GH +V L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 5/200 (2%)
Query: 50 GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
GAS+ ++ D G AL AA + +D A+ +++ D DN G+T LH A + V
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
+L++N A A +H G + +AA+ L ++ HAD +A D+ G+S LHWA
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLI-NSHADVNAVDDLGKSALHWA 129
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
A D +LL A++ Q+ TPL AA G+ E VL+ +++T D
Sbjct: 130 AAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 187
Query: 228 GLTPTQLAYDKGHRQVALYL 247
P +A ++ H + L
Sbjct: 188 DRLPRDIAQERMHHDIVRLL 207
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 34/175 (19%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
N A + A+ GD E ++K + +G L +AA N + +Y++ H
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
G DV+A D G LH A G VA++LV++GA V AD+ +
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--------------- 109
Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
+PLH AA KG + +LLL A ++++DG TPL
Sbjct: 110 -------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 119 VEAADVHGYRA--VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
V D+ G ++ +H AA Y + S + +++ ++ AD A D G PLH A G +
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
LL+ A D TPLH AA +G E C +L+ G + T K++ G TP L
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 149
Query: 237 D 237
D
Sbjct: 150 D 150
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLF------RDASQGRQDKDGCTPLHWAALRGNVEACT 210
++E L AA G +T++ L RD +GRQ TPLH+AA V
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQ----STPLHFAAGYNRVSVVE 59
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
L+ G ++ AKDK GL P A GH +VA L
Sbjct: 60 YLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVAELL 94
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 34/175 (19%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
N A + A+ GD E ++K + +G L +AA N + +Y++ H
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
G DV+A D G LH A G VA++LV++GA V AD+ +
Sbjct: 69 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--------------- 113
Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
+PLH AA KG + +LLL A ++++DG TPL
Sbjct: 114 -------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 119 VEAADVHGYRA--VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
V D+ G ++ +H AA Y + S + +++ ++ AD A D G PLH A G +
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
LL+ A D TPLH AA +G E C +L+ G + T K++ G TP L
Sbjct: 96 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 153
Query: 237 D 237
D
Sbjct: 154 D 154
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLF------RDASQGRQDKDGCTPLHWAALRGNVEACT 210
++E L AA G +T++ L RD +GRQ TPLH+AA V
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQ----STPLHFAAGYNRVSVVE 63
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
L+ G ++ AKDK GL P A GH +VA L
Sbjct: 64 YLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVAELL 98
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 34/175 (19%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
N A + A+ GD E ++K + +G L +AA N + +Y++ H
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
G DV+A D G LH A G VA++LV++GA V AD+ +
Sbjct: 67 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--------------- 111
Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
+PLH AA KG + +LLL A ++++DG TPL
Sbjct: 112 -------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 119 VEAADVHGYRA--VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
V D+ G ++ +H AA Y + S + +++ ++ AD A D G PLH A G +
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
LL+ A D TPLH AA +G E C +L+ G + T K++ G TP L
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 151
Query: 237 D 237
D
Sbjct: 152 D 152
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 155 ASDNEGRSPLHWAAYKGFADTIRLLLF------RDASQGRQDKDGCTPLHWAALRGNVEA 208
+ ++E L AA G +T++ L RD +GRQ TPLH+AA V
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQ----STPLHFAAGYNRVSV 59
Query: 209 CTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
L+ G ++ AKDK GL P A GH +VA L
Sbjct: 60 VEYLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVAELL 96
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD +A D +G +PLH AA G + + +LL A +D
Sbjct: 21 AARAGQDDEVRILMAN-GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
G TPLH AA+RG++E VL+ G ++ A+DK G T ++ D G+ +A
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G +H+AAQ G + ++ KY AD +A DN
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIV-EVLLKYGADVNAEDNF 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
G +PLH AA +G + + +LL A QDK G T + GN + +L
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 51/89 (57%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +G L AA +I + ++ +G DVNA DN G T LH AA+RG + +
Sbjct: 36 NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYG 137
+VL+++GA V A D G A ++ G
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
++ +T + A+ G E + ++ GA V+ D G L AA+ +I + ++ H
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVL 112
G DVNA D G+TA + G+ +A++L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD +A+D +G +PLH AA + + +LL A D D
Sbjct: 21 AARAGQDDEVRILMAN-GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
G TPLH AAL G++E VL+ G ++ A+DK G T ++ D G+ +A
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 51/89 (57%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G L AA + +I + ++ HG DVNA DN+G T LH AA+ G + +
Sbjct: 36 NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYG 137
+VL+++GA V A D G A ++ G
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D G +H+AA Y + ++ K+ AD +A DN+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDND 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
G +PLH AA G + + +LL A QDK G T + GN + +L
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 19 NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQY 78
N ND + T + A+ Y E + ++ GA V+ D +G L AAL +I +
Sbjct: 41 NANDRKGN-TPLHLAADYDHLEIVEVLLKH-GADVNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 79 IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVL 112
++ HG DVNA D G+TA + G+ +A++L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYF---ALQWAALNNFADIAQYIIDHGGDVNAT 89
A+A GD +++R+ + + + PD F ALQ + A IA ++ G N
Sbjct: 15 AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASPNVQ 70
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D +G + +H AA G + VLV++GA V D G +H+A Q G T+ ++ + A+
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 129
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
+D D G +PL A +G D + +L
Sbjct: 130 -SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 97 LHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
L AA RG + V +L + +A + G A+ V +G T+ ++ K A +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL-KQGASPNV 69
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
D G SP+H AA GF DT+++L+ A D G P+H A G+ + L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--- 126
Query: 216 GTKQELTAKDKAGLTPTQLAYDKG 239
+ +L +D GLTP +LA +G
Sbjct: 127 AAESDLHRRDARGLTPLELALQRG 150
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 87 NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
+A + G+TAL + GS A+A L++ GA D G VH AA+ G L ++
Sbjct: 36 DALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK-VL 93
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
++ AD + D G P+H A +G + L ++ R+D G TPL A RG
Sbjct: 94 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ 152
Query: 207 EACTVL 212
+ +L
Sbjct: 153 DLVDIL 158
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA G + ++ + DA + G++ L + A + LL + AS QD
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLK-QGASPNVQDTS 73
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252
G +P+H AA G ++ VLV G ++ D G P LA +GH V +L+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGA--DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 131
Query: 253 MHR 255
+HR
Sbjct: 132 LHR 134
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYF---ALQWAALNNFADIAQYIIDHGGDVNAT 89
A+A GD +++R+ + + + PD F ALQ + A IA ++ G N
Sbjct: 9 AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASPNVQ 64
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D +G + +H AA G + VLV++GA V D G +H+A Q G T+ ++ + A+
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
+D D G +PL A +G D + +L
Sbjct: 124 -SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 97 LHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
L AA RG + V +L + +A + G A+ V +G T+ ++ K A +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL-KQGASPNV 63
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
D G SP+H AA GF DT+++L+ A D G P+H A G+ + L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--- 120
Query: 216 GTKQELTAKDKAGLTPTQLAYDKG 239
+ +L +D GLTP +LA +G
Sbjct: 121 AAESDLHRRDARGLTPLELALQRG 144
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 87 NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
+A + G+TAL + GS A+A L++ GA D G VH AA+ G L ++
Sbjct: 30 DALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK-VL 87
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
++ AD + D G P+H A +G + L ++ R+D G TPL A RG
Sbjct: 88 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ 146
Query: 207 EACTVL 212
+ +L
Sbjct: 147 DLVDIL 152
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA G + ++ + DA + G++ L + A + LL + AS QD
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLK-QGASPNVQDTS 67
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252
G +P+H AA G ++ VLV G ++ D G P LA +GH V +L+
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGA--DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125
Query: 253 MHR 255
+HR
Sbjct: 126 LHR 128
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G L AA+N+ +I + ++ +G DVNA D G+T LH A+ G + +
Sbjct: 36 NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYG 137
+VL+++GA V A D G A ++ G
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD +A D G +PLH AA + + +LL A D
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
G TPLH A+ G++E VL+ G ++ A+DK G T ++ D G+ +A
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 34/139 (24%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D G T LH AA+ + + +VL++NGA
Sbjct: 28 DEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA---------------- 71
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
D +A D G +PLH A G + + +LL A QDK G
Sbjct: 72 ------------------DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Query: 194 CTPLHWAALRGNVEACTVL 212
T + GN + +L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 34 SAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNG 93
+A D ++ + + ++GA V+ D G L A+ +I + ++ HG DVNA D G
Sbjct: 54 AAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Query: 94 QTALHWAAVRGSIAVADVL 112
+TA + G+ +A++L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 29/255 (11%)
Query: 24 QAAVTD---VFSASAYGDFEKLRKFVEEDGASVS-RPDGNGYFALQWAALNNFADIAQYI 79
+AAV D + A D + +++ +E GA+V+ + + G+ L A + DI + +
Sbjct: 20 RAAVEDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELL 78
Query: 80 IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
+ HG D NG T AA+ GS+ + + + GA V D +G+ A AA YG+
Sbjct: 79 LRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138
Query: 140 SFLN---------HIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD 190
L ++ K D + G + L AA KG + +++LL + D
Sbjct: 139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL----DEMGAD 194
Query: 191 KDGCTPLHWAAL--------RGNVEACT-VLVHAGTKQELTAKDKAGLTPTQLAYDKGHR 241
+ C + AL +VEA T +L+ G ++ + + G TP LA +K H
Sbjct: 195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKHL 252
Query: 242 QVALYLSNAQHMHRN 256
+ L +H+ N
Sbjct: 253 GLVQRLLEQEHIEIN 267
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 38/139 (27%)
Query: 24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALN----NFADIAQYI 79
+ T + A+ G E L+ ++E GA V+ D G AL A L+ + I +
Sbjct: 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 225
Query: 80 IDHGGDVNA----------------------------------TDNNGQTALHWAAVRGS 105
+DHG DVN TD++G+TAL A
Sbjct: 226 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 285
Query: 106 IAVADVLVQNGARVEAADV 124
+A++L + GA + D+
Sbjct: 286 KKIAELLCKRGASTDCGDL 304
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G +++R + +GA V+ D G L AA +I + ++ HG DVNA+
Sbjct: 18 LLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
D+ G+T LH AA G + + +VL++ GA V A D G A ++ G
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
+L+ NGA V A D G +H+AA+ G + ++ K+ AD +ASD+ GR+PLH AA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
G + + +LL A QDK G T + GN + +L
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
AD +A D+ G +PLH AA +G + + +LL A D G TPLH AA G++E
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVE 97
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
VL+ G ++ A+DK G T ++ D G+ +A
Sbjct: 98 VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
+ A VT + A+ G E + ++ GA V+ D G L AA +I + ++++
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNASDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVL 112
G DVNA D G+TA + G+ +A++L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 48 EDGASVS-RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI 106
E GA+V+ + + G+ L A + DI + ++ HG D NG T AA+ GS+
Sbjct: 26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV 85
Query: 107 AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLN---------HIVAKYHADYDASD 157
+ + + GA V D +G+ A AA YG+ L ++ K D +
Sbjct: 86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR 145
Query: 158 NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL--------RGNVEAC 209
G + L AA KG + +++LL + D + C + AL +VEA
Sbjct: 146 KGGATALMDAAEKGHVEVLKILL----DEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201
Query: 210 T-VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRN 256
T +L+ G ++ + + G TP LA +K H + L +H+ N
Sbjct: 202 THLLLDHGA--DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 38/139 (27%)
Query: 24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALN----NFADIAQYI 79
+ T + A+ G E L+ ++E GA V+ D G AL A L+ + I +
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Query: 80 IDHGGDVNA----------------------------------TDNNGQTALHWAAVRGS 105
+DHG DVN TD++G+TAL A
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265
Query: 106 IAVADVLVQNGARVEAADV 124
+A++L + GA + D+
Sbjct: 266 KKIAELLCKRGASTDCGDL 284
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218
+G +PLH AA G A+ ++ LL + A + KDG TPLH AA G+ E +L+ G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA- 66
Query: 219 QELTAKDKAGLTPTQLAYDKGHRQVALYL-SNAQHMHRNHWG 259
++ A+ K G TP LA GH ++ L + ++ WG
Sbjct: 67 -DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
G +H AA+ G + +++K AD +A +G +PLH AA G A+ ++LLL + A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
+ KDG TP H A G+ E +L G
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 57 DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
DGN L AA N A+ + ++ G DVNA +G T LH AA G + +L+ G
Sbjct: 8 DGNT--PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
A V A G H+A + G + + AK
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
T + +A+ G E+++K + + GA V+ +G L AA N A+I + ++ G DVN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 88 ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
A +G T H A G + +L GA V A
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 191 KDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
KDG TPLH AA G+ E L+ G ++ A+ K G TP LA GH ++ L
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGA--DVNARSKDGNTPLHLAAKNGHAEIVKLL 61
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
AD +A D+ G +PLH AA +G + + +LL A +D G TPLH AA G++E
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVE 97
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
VL+ G ++ A+DK G T ++ D G+ +A
Sbjct: 98 VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G +++R + +GA V+ D G L AA +I + ++ HG DVNA
Sbjct: 18 LLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
D G+T LH AA G + + +VL++ GA V A D G A ++ G
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
+L+ NGA V A D G +H+AA+ G + ++ K+ AD +A D GR+PLH AA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
G + + +LL A QDK G T + GN + +L
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
+ A VT + A+ G E + ++ GA V+ D G L AA +I + ++++
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVL 112
G DVNA D G+TA + G+ +A++L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 56 PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN 115
D G AL WA NN IA+ ++ G +VN D +G+T L W+ + G ++ L+++
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADT 175
GA V ++ G + VA++YG++ + ++ + AD A D G + A G +
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEASARIFGRQEV 182
Query: 176 IRLL 179
I++
Sbjct: 183 IKIF 186
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 87 NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
N D+ +T L A + G D LV+N ++E D+ G A+ A + + ++
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
+K ++ + D G++PL W+ G+++ LL A+ ++ +G TPL A+ G
Sbjct: 89 SK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 207 EACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
E L+ G +++A+D GLT A G ++V
Sbjct: 148 EIVKKLLELGA--DISARDLTGLTAEASARIFGRQEV 182
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
G++V+ D +G L W+ + +++++ ++++HG +VN + G+T L A+ G +
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIV 150
Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
L++ GA + A D+ G A A +G+ +
Sbjct: 151 KKLLELGADISARDLTGLTAEASARIFGRQEVI 183
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 79 IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ 138
++++ + D G TAL WA + +A+ L+ G+ V D G + + +G
Sbjct: 54 LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113
Query: 139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
+ +++ + ++ A+ + + EG +PL A+ G ++ ++ LL A +D G T
Sbjct: 114 SE-MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172
Query: 199 WAALRGNVEACTVLVHA 215
A + G E +
Sbjct: 173 SARIFGRQEVIKIFTEV 189
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 39 FEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALH 98
+ ++ F+ E GA+V+ + G L A+ ++I + +++ G D++A D G TA
Sbjct: 113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172
Query: 99 WAAVRGSIAVADVLVQ 114
A + G V + +
Sbjct: 173 SARIFGRQEVIKIFTE 188
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G L AA +I + ++ HG DVNA+D G+T LH AA G + +
Sbjct: 36 NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYG 137
+VL++ GA V A D G A ++ G
Sbjct: 96 VEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
AD +A D+ G +PLH AA +G + + +LL A D G TPLH AA G++E
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVE 97
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
VL+ G ++ A+DK G T ++ D G+ +A
Sbjct: 98 VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
+L+ NGA V A D G +H+AA+ G + ++ K+ AD +ASD GR+PLH AA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
G + + +LL A QDK G T + GN + +L
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
+ A VT + A+ G E + ++ GA V+ D G L AA +I + ++++
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNASDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVL 112
G DVNA D G+TA + G+ +A++L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 89 TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
T++ G+T LH A+++G I + L+QNG+ D G+ +H A +G + ++ +
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE-LLLQ 64
Query: 149 YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHW 199
+ A + + + SPLH AA G D ++LLL AS+ + G P+ +
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
N T + AS GD + +++ ++G+ + D G+ L A + + + ++ H
Sbjct: 7 NHRGETLLHIASIKGDIPSV-EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
VN T + LH AA G + + +L+ GA A ++ G R V S L
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L NGA V A D G+ +H+AA G + ++ K AD +A+ N
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGNT 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
GR+PLH AA+ + + +LL A QDK G T + GN + +L
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 44 KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103
+ + +GA V+ D G+ L AA+ +I + ++ +G DVNAT N G+T LH AA
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWA 90
Query: 104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
+ + +VL+++GA V A D G A ++ G
Sbjct: 91 DHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + I+ AD +A+D G +PLH AA G + + +LL A
Sbjct: 21 AARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
G TPLH AA ++E VL+ G ++ A+DK G T ++ D G+ +A
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 48 EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA 107
++GA V+ G L AA + +I + ++ HG DVNA D G+TA + G+
Sbjct: 68 KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 108 VADVL 112
+A++L
Sbjct: 128 LAEIL 132
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYF---ALQWAALNNFADIAQYIIDHGGDVNAT 89
A+A GD +++R+ + + + PD F ALQ + A +A ++ G N
Sbjct: 15 AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQ 70
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D +G + +H AA G + VLV++GA V A D G +H+A + G +S ++ + +
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 129
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
+D D G +PL A +G + + +L
Sbjct: 130 -SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 97 LHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
L AA RG + V +L + +A + G A+ V +G + ++ K A +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELL-KQGASPNV 69
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
D G SP+H AA GF DT+++L+ A D G P+H A G+ + L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--- 126
Query: 216 GTKQELTAKDKAGLTPTQLAYDKGHRQV 243
+ +L +D +GLTP +LA +G + +
Sbjct: 127 APESDLHHRDASGLTPLELARQRGAQNL 154
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 167 AAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
AA G D +R+L+ A +DKDG TPLH AA G++E VL+ AG ++ A+DK
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDK 66
Query: 227 AGLTPTQLAYDKGHRQVALYLSNA 250
G T ++ D G+ +A L A
Sbjct: 67 FGKTAFDISIDNGNEDLAEILQKA 90
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DVNA D +G T LH AA G + + +VL++ GA V A D G A ++
Sbjct: 16 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Query: 134 AQYG 137
G
Sbjct: 76 IDNG 79
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D +GY L AA +I + ++ G DVNA D G+TA + G+ +
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 83
Query: 109 ADVL 112
A++L
Sbjct: 84 AEIL 87
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD +A D +G +PLH AA +G + + +LL A QDK
Sbjct: 9 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 193 GCTPLHWAALRGNVEACTVLVHAG 216
G T + GN + +L A
Sbjct: 68 GKTAFDISIDNGNEDLAEILQKAA 91
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D GY +H+AA+ G + ++ K AD +A D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKF 67
Query: 160 GRSPLHWAAYKGFADTIRLL 179
G++ + G D +L
Sbjct: 68 GKTAFDISIDNGNEDLAEIL 87
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYF---ALQWAALNNFADIAQYIIDHGGDVNAT 89
A+A GD +++R+ + + + PD F ALQ + A +A ++ G N
Sbjct: 17 AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQ 72
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
D +G + +H AA G + VLV++GA V A D G +H+A + G +S ++ + +
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 131
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
+D D G +PL A +G + + +L
Sbjct: 132 -SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 97 LHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
L AA RG + V +L + +A + G A+ V +G + ++ K A +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELL-KQGASPNV 71
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
D G SP+H AA GF DT+++L+ A D G P+H A G+ + L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--- 128
Query: 216 GTKQELTAKDKAGLTPTQLAYDKGHRQV 243
+ +L +D +GLTP +LA +G + +
Sbjct: 129 APESDLHHRDASGLTPLELARQRGAQNL 156
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 32/164 (19%)
Query: 84 GDVNATDNNGQTALHWAA---VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
GD+ D NG TAL A R +A A +LV+ GA+V D G
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKV---DYDGA------------- 269
Query: 141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS-QGRQDKDGCTPLHW 199
A D+ +GR+ LH+AA ++ L+ S + +QD+DG TP+
Sbjct: 270 ----------ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXL 319
Query: 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
AA G +E L+ G E A D T QLA H +
Sbjct: 320 AAQEGRIEVVXYLIQQGASVE--AVDATDHTARQLAQANNHHNI 361
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 44 KFVEEDGASV-----SRPDGNGY---FALQWAALNNFADIAQYII-DHGGDVNATDNNGQ 94
K + E GA V +R D Y AL +AA + I +Y++ + G + + D +G+
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK 314
Query: 95 TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
T + AA G I V L+Q GA VEA D H A Q Q + ++IV
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQGASVEAVDA----TDHTARQLAQANNHHNIV 362
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D G L A + +I + ++ +G DVNA D G T LH AA G + +
Sbjct: 36 NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYG 137
A+VL+++GA V A D G A ++ G
Sbjct: 96 AEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD +A D G +PL+ A G + + +LL A D
Sbjct: 21 AARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
G TPLH AA G++E VL+ G ++ A+DK G T ++ G+ +A
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGA--DVNAQDKFGKTAFDISIGNGNEDLA 129
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D +G +++A +G + ++ K AD +A D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV-EVLLKNGADVNAVDAI 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
G +PLH AA+ G + +LL A QDK G T + GN + +L
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
++ +T ++ A+A+G E + ++ +GA V+ D G+ L AA +IA+ ++ H
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVL 112
G DVNA D G+TA + G+ +A++L
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 18/216 (8%)
Query: 27 VTDVFSASAYGDFEKLRKFVE---------EDGASVSRPDGNGYFALQWAALNNFADIAQ 77
V + A A GD E +R +E ED S + P+ F A +
Sbjct: 12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPE----FCHPLCQCPKCAPAQK 67
Query: 78 YIID---HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
+ G VN T +G + LH AA+ G + +L+++GA A + +H+A
Sbjct: 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 135 QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGC 194
Q G + ++ +A + D G +PL +A G + + LLL AS + G
Sbjct: 128 QQGHFQVVKCLL-DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGN 186
Query: 195 TPLHWAALRGNVEACT-VLVHAGTKQELTAKDKAGL 229
T LH A + +V +L+H + Q L + + +
Sbjct: 187 TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 154 DASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213
+ + +G SPLH AA G AD I LLL A+ G ++ D PLH A +G+ + L+
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 214 HAGTKQELTAKDKAGLTPTQLAYDKGHRQ-VALYLSN 249
+ K KD +G TP A GH + VAL L +
Sbjct: 140 DSNAKP--NKKDLSGNTPLIYACSGGHHELVALLLQH 174
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
A G F+ ++ ++ + A ++ D +G L +A ++ ++ HG +NA++N
Sbjct: 126 ACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK 184
Query: 93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
G TALH A + + V ++L+ +GA V+ + AV A Q + L +V A
Sbjct: 185 GNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244
Query: 153 YD 154
D
Sbjct: 245 LD 246
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADT 175
G V + D G +HVAA +G+ + ++ K+ A+ A + + PLH A +G
Sbjct: 78 GVNVTSQD--GSSPLHVAALHGRADLIP-LLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 176 IRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235
++ LL +A ++D G TPL +A G+ E +L+ G + A + G T A
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS--INASNNKGNTALHEA 192
Query: 236 YDKGH----RQVALYLSNAQHMHRNHWGDKICGRKTSDI 270
+ H + L+ ++ Q +++ C + S I
Sbjct: 193 VIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%)
Query: 29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
++ A+ G+ EKL + + DG L AA N I Q ++ HG DV+A
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 89 TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
D G LH A G V ++L+++GA V A D+ + +H AA
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA 132
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 107/288 (37%), Gaps = 74/288 (25%)
Query: 41 KLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWA 100
++ + + + GA V D G L A ++ + ++ HG VNA D T LH A
Sbjct: 72 RIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA 131
Query: 101 AVRGSIAVADVLVQNGARVEAADVHGYRAVHVA--------------------------- 133
A + + V +L+ +GA + HG AV +A
Sbjct: 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL 191
Query: 134 AQYGQTSFLNHI---------------VAKYH--------------ADYDASDNEGRSPL 164
A+ +T L I VA H A+ + + + +PL
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251
Query: 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAK 224
H AA + D + +L A D G T LH AAL G+++ C +L+ G+ + +
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311
Query: 225 DKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGY 272
G T Q+ G+ V LS + M +TSD+ Y
Sbjct: 312 Q--GFTAAQM----GNEAVQQILSESTPM------------RTSDVDY 341
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
AS + +++ + + GA+V+ + + L AA D+ + + HG +NA D+
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL 279
Query: 93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
GQTALH AA+ G + +L+ G+ + G+ AAQ G
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF----TAAQMG 320
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA----RV 119
L A + + + ++ G A D +GQTA H A S L+ + A +
Sbjct: 50 LHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109
Query: 120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD-NEGRSPLHWAAYKGFADTIRL 178
EA + G A+HVA + ++ + AD DA D GRSPL A ++L
Sbjct: 110 EARNYDGLTALHVAVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 179 LLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQEL 221
LL A+ Q G + LH A+ RG + LV +G L
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
G +++ +N QT LH A + +V +LV GA A D HG A H+A ++ + L
Sbjct: 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCL 95
Query: 143 NHIV---AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD-KDGCTPLH 198
++ A D +A + +G + LH A +T++LLL R A D K G +PL
Sbjct: 96 RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 155
Query: 199 WAALRGNVEACTVLVHAG 216
A ++ +L+ G
Sbjct: 156 HAVENNSLSMVQLLLQHG 173
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 4/164 (2%)
Query: 44 KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG----DVNATDNNGQTALHW 99
+ + GAS D +G A A + + ++D D+ A + +G TALH
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
A +L++ GA ++A D+ R+ + A + + ++ ++ A+ +A
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR 203
G S LH A+ +G +R L+ A ++ TPL A R
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 188 RQDKDGCTPLHWAALRGNVEACTVLVHAGTK--QELTAKDKAGLTPTQLA 235
R D+DG TPLH A ++GN+ A LV+ + +EL + TP LA
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 53
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 156 SDNEGRSPLHWAAYKGFADTIRLL--LFRDASQGRQDKD-----GCTPLHWAALRGNVEA 208
+D +G +PLH A +G + L LF+ QG ++ D TPLH A +
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQ---QGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 209 CTVLVHAGTKQELTAKDKAGLTPTQLA 235
+LV AG A D+ G T LA
Sbjct: 62 VRLLVTAGASP--MALDRHGQTAAHLA 86
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 167 AAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
AA G D +R+L+ A +DK+G TPLH AA G++E +L+ AG ++ A+DK
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVXAQDK 88
Query: 227 AGLTPTQLAYDKGHRQVA 244
G T ++ D G+ +A
Sbjct: 89 FGKTAFDISIDNGNEDLA 106
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DV A D NG T LH AA G + V +L++ GA V A D G A ++
Sbjct: 38 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Query: 134 AQYG 137
G
Sbjct: 98 IDNG 101
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD A D G +PLH AA G + ++LLL A QDK
Sbjct: 31 AARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 193 GCTPLHWAALRGNVEACTVL 212
G T + GN + +L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D NG L AA N ++ + +++ G DV A D G+TA + G+ +
Sbjct: 46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105
Query: 109 ADVL 112
A++L
Sbjct: 106 AEIL 109
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D +G +H+AA+ G + ++ + AD A D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK-LLLEAGADVXAQDKF 89
Query: 160 GRSPLHWAAYKGFADTIRLL 179
G++ + G D +L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 28.9 bits (63), Expect = 6.9, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
AA G + +L+ G ++ AKDK G TP LA GH +V L A
Sbjct: 31 AARAGQDDEVRILMANGA--DVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 36/185 (19%)
Query: 65 QWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV 124
Q AA + +++ VN D G T L WA+ G I L++ GA
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------ 61
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184
HI+AK E S L A+ G+ D + LLL RD
Sbjct: 62 ------------------PHILAK----------ERESALSLASTGGYTDIVGLLLERDV 93
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
D +G TPL +A +V+ L+ G +LT + +G TP LA G+R+V
Sbjct: 94 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 245 LYLSN 249
+ N
Sbjct: 152 QVIEN 156
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ +A G+ ++L++ + + V++PD G+ L WA+ + +++++ G D +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
++AL A+ G + +L++ + D +G + A + + ++A+
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR- 124
Query: 150 HADYDASDNEGRSPLHWAAYKGF 172
AD + G +P+ A G+
Sbjct: 125 GADLTTEADSGYTPMDLAVALGY 147
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 167 AAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
AA G D +R+L+ A +DK+G TPLH AA G++E +L+ AG ++ A+DK
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVNAQDK 70
Query: 227 AGLTPTQLAYDKGHRQVA 244
G T ++ D G+ +A
Sbjct: 71 FGKTAFDISIDNGNEDLA 88
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 74 DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
D + ++ +G DV A D NG T LH AA G + V +L++ GA V A D G A ++
Sbjct: 20 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Query: 134 AQYG 137
G
Sbjct: 80 IDNG 83
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 49 DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
+GA V+ D NG L AA N ++ + +++ G DVNA D G+TA + G+ +
Sbjct: 28 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDL 87
Query: 109 ADVL 112
A++L
Sbjct: 88 AEIL 91
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA+ GQ + ++A AD A D G +PLH AA G + ++LLL A QDK
Sbjct: 13 AARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
Query: 193 GCTPLHWAALRGNVEACTVL 212
G T + GN + +L
Sbjct: 72 GKTAFDISIDNGNEDLAEIL 91
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA G +L+ NGA V A D +G +H+AA+ G + ++ + AD +A D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK-LLLEAGADVNAQDKF 71
Query: 160 GRSPLHWAAYKGFADTIRLL 179
G++ + G D +L
Sbjct: 72 GKTAFDISIDNGNEDLAEIL 91
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
AA G + +L+ G ++ AKDK G TP LA GH +V L A
Sbjct: 13 AARAGQDDEVRILMANGA--DVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 5/182 (2%)
Query: 70 NNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV---EAADVHG 126
N F + + + + D +G+ LHW+ + + L+ V + D G
Sbjct: 13 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 127 YRAVHVAAQYGQTSFLNHIVAK-YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
+ H+A G + + + D + N+G + LH A K + + + L+ AS
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245
+DK PLH AA G+++ +L G K + +DK G TP A +GH A+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 246 YL 247
L
Sbjct: 192 LL 193
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 9/188 (4%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA---T 89
A +F K+++ + + + + D +G L W+ +I +++ +VN
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV--HGYRAVHVAAQYGQTSF-LNHIV 146
D++G T H A G++ V L + + + G +H+A G+ F ++ +
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVSQFL 126
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL-FRDASQGRQDKDGCTPLHWAALRGN 205
+ A D + PLH AA G I LL ++ QDK G TPL A G+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 206 VEACTVLV 213
+A +LV
Sbjct: 187 GDAAVLLV 194
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 55 RPDGN-----GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
+PD N G L A + +++Q++I++G V D Q LH AA GS+ +
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 110 DVLVQNG-ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEG 160
++L G + V D G+ + A G +V KY A+YD DN+G
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 80 IDHGGDVNATDNNGQ---TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
+ HG DVN N GQ T L A S+ + L+QNGA V AD G +H A
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-----RDASQGR 188
G T L + K AD A D+EGR PL A AD + LL +A+QG+
Sbjct: 279 GHTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/97 (18%), Positives = 45/97 (46%)
Query: 77 QYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
++++ +G +VN D+ G+ LH A + G +A + ++ GA + A D G + +A +
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFA 173
+ + + +A+ + + ++ F+
Sbjct: 312 ANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 21 NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII 80
N Q T + A+A +F+ ++GA+V++ D G L A + +A +
Sbjct: 230 NGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288
Query: 81 DHGGDVNATDNNGQTALHWA 100
G D+ A D+ G+ L A
Sbjct: 289 KRGADLGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 80 IDHGGDVNATDNNGQ---TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
+ HG DVN N GQ T L A S+ + L+QNGA V AD G +H A
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-----RDASQGR 188
G T L + K AD A D+EGR PL A AD + LL +A+QG+
Sbjct: 279 GHTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
N +Q A N+ ++++ +G +VN D+ G+ LH A + G +A + ++ GA
Sbjct: 235 NATPLIQATAANSLL-ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFA 173
+ A D G + +A + + + + +A+ + + ++ F+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 21 NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII 80
N Q T + A+A +F+ ++GA+V++ D G L A + +A +
Sbjct: 230 NGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288
Query: 81 DHGGDVNATDNNGQTALHWA 100
G D+ A D+ G+ L A
Sbjct: 289 KRGADLGARDSEGRDPLTIA 308
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 5/182 (2%)
Query: 70 NNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV---EAADVHG 126
N F + + + + D +G+ LHW+ + + L+ V + D G
Sbjct: 13 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 127 YRAVHVAAQYGQTSFLNHIVAK-YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
+ H+A G + + + D + N+G + LH A K + + + L+ AS
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245
+DK PLH AA G+++ +L G K + +DK G TP A +GH A+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 246 YL 247
L
Sbjct: 192 LL 193
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 55 RPDGN-----GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
+PD N G L A + +++Q++I++G V D Q LH AA GS+ +
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 110 DVLVQNG-ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEG 160
++L G + V D G+ + A G +V KY A+YD DN+G
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 9/189 (4%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA---T 89
A +F K+++ + + + + D +G L W+ +I +++ +VN
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV--HGYRAVHVAAQYGQTSF-LNHIV 146
D++G T H A G++ V L + + + G +H+A G+ F ++ +
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVSQFL 126
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL-FRDASQGRQDKDGCTPLHWAALRGN 205
+ A D + PLH AA G I LL ++ QDK G TPL A G+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 206 VEACTVLVH 214
+A +LV
Sbjct: 187 GDAAVLLVE 195
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 80 IDHGGDVNATDNNGQ---TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
+ HG DVN N GQ T L A S+ + L+QNGA V AD G +H A
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-----RDASQGR 188
G T L + K AD A D+EGR PL A AD + LL +A+QG+
Sbjct: 279 GHTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/97 (18%), Positives = 45/97 (46%)
Query: 77 QYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
++++ +G +VN D+ G+ LH A + G +A + ++ GA + A D G + +A +
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFA 173
+ + + +A+ + + ++ F+
Sbjct: 312 ANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 21 NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII 80
N Q T + A+A +F+ ++GA+V++ D G L A + +A +
Sbjct: 230 NGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288
Query: 81 DHGGDVNATDNNGQTALHWA 100
G D+ A D+ G+ L A
Sbjct: 289 KRGADLGARDSEGRDPLTIA 308
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 36/185 (19%)
Query: 65 QWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV 124
Q AA + +++ VN D G T L WA+ G I L++ GA
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------ 61
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184
HI+AK E S L A+ G+ D + LLL RD
Sbjct: 62 ------------------PHILAK----------ERESALSLASTGGYTDIVGLLLERDV 93
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
D +G TPL +A +V+ L+ G +LT + +G TP LA G+R+V
Sbjct: 94 DINIYDWNGGTPLLYAVHGNHVKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 245 LYLSN 249
+ N
Sbjct: 152 QVIEN 156
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ +A G+ ++L++ + + V++PD G+ L WA+ + +++++ G D +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
++AL A+ G + +L++ + D +G + A + ++A+
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR- 124
Query: 150 HADYDASDNEGRSPLHWAAYKGF 172
AD + G +P+ A G+
Sbjct: 125 GADLTTEADSGYTPMDLAVALGY 147
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 5/182 (2%)
Query: 70 NNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV---EAADVHG 126
N F + + + + D +G+ LHW+ + + L+ V + D G
Sbjct: 13 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 127 YRAVHVAAQYGQTSFLNHIVAK-YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
+ H+A G + + + D + N+G + LH A K + + + L+ AS
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245
+DK PLH AA G+++ +L G K + +DK G TP A +GH A+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 246 YL 247
L
Sbjct: 192 LL 193
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 9/189 (4%)
Query: 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA---T 89
A +F K+++ + + + + D +G L W+ +I +++ +VN
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV--HGYRAVHVAAQYGQTSF-LNHIV 146
D++G T H A G++ V L + + + G +H+A G+ F ++ +
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVSQFL 126
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL-FRDASQGRQDKDGCTPLHWAALRGN 205
+ A D + PLH AA G I LL ++ QDK G TPL A G+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 206 VEACTVLVH 214
+A +LV
Sbjct: 187 GDAAVLLVE 195
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
+L+ NGA D G +H+AAQYG S ++ + DA R+PLH AA +
Sbjct: 20 ILMANGAPF-TTDWLGTSPLHLAAQYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASE 77
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G A+ + +LL A +D T LHWA + E +L+ G ++ + K T
Sbjct: 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA--DVHTQSKFCKT 135
Query: 231 PTQLAYDKGHRQVALYL 247
++ D G+ +A L
Sbjct: 136 AFDISIDNGNEDLAEIL 152
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
L AA A+I + ++ HG DVNA D TALHWA V ++L++ GA
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----- 125
Query: 124 VHGYRAVHVAAQYGQTSF 141
VH +++ +T+F
Sbjct: 126 ------VHTQSKFCKTAF 137
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Query: 89 TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
TD G + LH AA G + +VL++ G +A +H+AA G + + ++ K
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVE-VLLK 88
Query: 149 YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEA 208
+ AD +A D + LHWA + + LL+ A Q K T + GN +
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 209 CTVL 212
+L
Sbjct: 149 AEIL 152
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
GA V+ D AL WA +N ++ + +I +G DV+ +TA + G+ +A
Sbjct: 90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149
Query: 110 DVL 112
++L
Sbjct: 150 EIL 152
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 27 VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV 86
+ D+F+ G+ +R +++ +++ D +G+ L WA + + + +I G +
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 87 NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
N + T LH AA G + L+Q A + A + HG +H A +GQ +V
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 147 A 147
A
Sbjct: 126 A 126
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
D + D+ G SPLHWA +G + + +L+ R A ++ TPLH AA G+ +
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 212 LVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
L+ K ++ A ++ G P A G QVA
Sbjct: 91 LLQ--YKADINAVNEHGNVPLHYACFWGQDQVA 121
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
L AA + DI Q ++ + D+NA + +G LH+A G VA+ LV NGA V +
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 124 VHGYRAVHVA 133
+G V A
Sbjct: 136 KYGEMPVDKA 145
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181
D HG+ +H A + G+++ + ++ + A + + +PLH AA G D ++ LL
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 93
Query: 182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
A ++ G PLH+A G + LV G
Sbjct: 94 YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 27 VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV 86
+ D+F+ G+ +R +++ +++ D +G+ L WA + + + +I G +
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 87 NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
N + T LH AA G + L+Q A + A + HG +H A +GQ +V
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 147 A 147
A
Sbjct: 121 A 121
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
D + D+ G SPLHWA +G + + +L+ R A ++ TPLH AA G+ +
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 212 LVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
L+ K ++ A ++ G P A G QVA
Sbjct: 86 LLQ--YKADINAVNEHGNVPLHYACFWGQDQVA 116
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
L AA + DI Q ++ + D+NA + +G LH+A G VA+ LV NGA V +
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 124 VHGYRAVHVA 133
+G V A
Sbjct: 131 KYGEMPVDKA 140
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181
D HG+ +H A + G+++ + ++ + A + + +PLH AA G D ++ LL
Sbjct: 30 GDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 88
Query: 182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217
A ++ G PLH+A G + LV G
Sbjct: 89 YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 14/211 (6%)
Query: 28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
+ + A+ +G LR + + G +V+ + L A L + ++ HG VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 88 ATDNNGQTALHWAAVRGSIAVADVLVQNGARVE-AADVHGYRAVHVAAQYGQTSFLNHIV 146
+ T L A V GS ++L+Q+GA V+ +D+ +H AA+ G +N ++
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLI 121
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR--DASQGR-QDKDGCTPLHWAALR 203
A Y + D + +PL+ A ++ LL D +QG+ QD +PLH A
Sbjct: 122 A-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD----SPLHAVART 176
Query: 204 GNVEACTVLVHAGTKQELTAKDKAGLTPTQL 234
+ E +L+ G + AK+ G P +L
Sbjct: 177 ASEELACLLMDFGADTQ--AKNAEGKRPVEL 205
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 22/191 (11%)
Query: 69 LNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA-RVEAADVHGY 127
L F ++ ++D+ VN D+NG TALH++ + V L+ +G +V+ + GY
Sbjct: 89 LVTFRAMSARLLDYV--VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGY 146
Query: 128 RAVHVAA-----------QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
+ + A Q L +I AK + G++ L A G D +
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLGNINAK-------ASQAGQTALMLAVSHGRVDVV 199
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
+ LL +A QD DG T L A G+ E +L+ A +++ D+ G T +A
Sbjct: 200 KALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL-AVPSCDISLTDRDGSTALMVAL 258
Query: 237 DKGHRQVALYL 247
D G ++A L
Sbjct: 259 DAGQSEIASML 269
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 60 GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQ-NGAR 118
G AL A + D+ + ++ DVN D++G TAL A G +A +L+
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH 150
+ D G A+ VA GQ+ + + ++ +
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 80 IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
I+ +N TD G T L WAA G IAV + L+QNGA +
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL----------------- 65
Query: 140 SFLNHIVAKYHADYDASDNEGR-SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
+GR S L A KG+ D +++LL D +G TPL
Sbjct: 66 ------------------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
+A +V+ +L+ +G + T + +G LA G+R V
Sbjct: 108 YAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 150
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 3 SSEIEVVSSTEAIPNEN--QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNG 60
+++ E++ I EN + ++ T + A+A+G + +F+ ++GA
Sbjct: 11 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGR 69
Query: 61 YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE 120
AL A + DI + ++D G DVN D NG T L +A + +L+++GA
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129
Query: 121 AADVHGYRAVHVAAQYGQTS 140
GY ++ +A G S
Sbjct: 130 IETDSGYNSMDLAVALGYRS 149
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 190 DKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
D++G TPL WAA G + L+ G +L K + + LA KG+ + L
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKML 88
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR----- 118
L A + N +IA+ ++ G D D G T LH A +G +A VL Q+
Sbjct: 46 LHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 105
Query: 119 -VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN-EGRSPLHWAAYKGFADTI 176
++A + +G+ +H+A+ +G + +V+ AD +A + GR+ LH A D +
Sbjct: 106 ILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 177 RLLLFRDASQGRQDKDGCTP 196
LLL A R G +P
Sbjct: 165 SLLLKCGADVNRVTYQGYSP 184
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 8/159 (5%)
Query: 86 VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI 145
+N +N QT LH A + +A+ L+ G E D G +H+A + G + + +
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 146 VAK-----YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK-DGCTPLHW 199
H+ A++ G + LH A+ G+ + LL+ A Q+ +G T LH
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK 238
A N + ++L+ G ++ G +P QL + +
Sbjct: 155 AVDLQNPDLVSLLLKCGA--DVNRVTYQGYSPYQLTWGR 191
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDN-NGQTALHWAAVRGSIAVADVLVQNGA 117
NG+ L A+++ + I + ++ G DVNA + NG+TALH A + + +L++ GA
Sbjct: 113 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 172
Query: 118 RVEAADVHGYR---------AVHVAAQYGQTSFLN 143
V GY + + Q GQ + N
Sbjct: 173 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 207
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 6/191 (3%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ D +K+++ +++ V D G L A NN +IA+ +ID G D+N
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
++ + +A +G + ++++ + + +G A+ AA+ G + ++
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 149 YHADYDASDNEGRSPLHWA-----AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR 203
D D ++ G + L A + + D ++LL+ A Q +D G T + +A +
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188
Query: 204 GNVEACTVLVH 214
G E +L
Sbjct: 189 GYTEISKILAQ 199
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Query: 129 AVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGR 188
A+ AA T + I+ D D EG +PL+ A + + + L+ R A
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 189 QDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH 240
Q+ +P +A +G E ++ T +L ++ G A +KGH
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHATP-DLNKHNRYGGNALIPAAEKGH 118
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 80 IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
I+ +N TD G T L WAA G IAV + L+QNGA +
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL----------------- 81
Query: 140 SFLNHIVAKYHADYDASDNEGR-SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
+GR S L A KG+ D +++LL D +G TPL
Sbjct: 82 ------------------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 123
Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
+A +V+ +L+ +G + T + +G LA G+R V
Sbjct: 124 YAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 166
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 7 EVVSSTEAIPNEN--QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFAL 64
E++ I EN + ++ T + A+A+G + +F+ ++GA AL
Sbjct: 31 EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI-AVVEFLLQNGADPQLLGKGRESAL 89
Query: 65 QWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV 124
A + DI + ++D G DVN D NG T L +A + +L+++GA
Sbjct: 90 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 149
Query: 125 HGYRAVHVAAQYGQTS 140
GY ++ +A G S
Sbjct: 150 SGYNSMDLAVALGYRS 165
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 190 DKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
D++G TPL WAA G + L+ G +L K + + LA KG+ + L
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKML 104
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 80 IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
I+ +N TD G T L WAA G IAV + L+QNGA +
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL----------------- 63
Query: 140 SFLNHIVAKYHADYDASDNEGR-SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
+GR S L A KG+ D +++LL D +G TPL
Sbjct: 64 ------------------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 105
Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
+A +V+ +L+ +G + T + +G LA G+R V
Sbjct: 106 YAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 148
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 7 EVVSSTEAIPNEN--QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFAL 64
E++ I EN + ++ T + A+A+G + +F+ ++GA AL
Sbjct: 13 EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI-AVVEFLLQNGADPQLLGKGRESAL 71
Query: 65 QWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV 124
A + DI + ++D G DVN D NG T L +A + +L+++GA
Sbjct: 72 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 131
Query: 125 HGYRAVHVAAQYGQTS 140
GY ++ +A G S
Sbjct: 132 SGYNSMDLAVALGYRS 147
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 190 DKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
D++G TPL WAA G + L+ G +L K + + LA KG+ + L
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKML 86
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR----- 118
L A + N +IA+ ++ G D D G T LH A +G +A VL Q+
Sbjct: 49 LHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108
Query: 119 -VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN-EGRSPLHWAAYKGFADTI 176
++A + +G+ +H+A+ +G + +V+ AD +A + GR+ LH A D +
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 177 RLLLFRDASQGRQDKDGCTP 196
LLL A R G +P
Sbjct: 168 SLLLKCGADVNRVTYQGYSP 187
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 13/179 (7%)
Query: 86 VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI 145
+N +N QT LH A + +A+ L+ G E D G +H+A + G + + +
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 146 VAK-----YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK-DGCTPLHW 199
H+ A++ G + LH A+ G+ + LL+ A Q+ +G T LH
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV-----ALYLSNAQHM 253
A N + ++L+ G ++ G +P QL + + ++ L L N Q +
Sbjct: 158 AVDLQNPDLVSLLLKCGA--DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 214
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDN-NGQTALHWAAVRGSIAVADVLVQNGA 117
NG+ L A+++ + I + ++ G DVNA + NG+TALH A + + +L++ GA
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
Query: 118 RVEAADVHGYR---------AVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR 161
V GY + + Q GQ + N + D ++ D E
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 17/216 (7%)
Query: 26 AVTD---VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
AV+D + A+ +G LR + + G +V+ + L A L + ++ H
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114
Query: 83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA-ADVHGYRAVHVAAQYGQTSF 141
G VN + T L A V GS ++L+Q+GA V+ +D+ +H AA+ G
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVEC 172
Query: 142 LNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR--DASQGR-QDKDGCTPLH 198
+N ++A Y + D + +PL+ A ++ LL D +QG+ QD +PLH
Sbjct: 173 VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD----SPLH 227
Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQL 234
+ E +L+ G + AK+ G P +L
Sbjct: 228 AVVRTASEELACLLMDFGADTQ--AKNAEGKRPVEL 261
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 34/225 (15%)
Query: 28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV- 86
+ + A+ D + L K ++ +G V + G AL AAL + + A +++ ++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 87 ----NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
+ GQTALH A + ++ + L+ GA V A RA Y + +
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA------RATGSVFHYRPHNLI 118
Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL 202
+ G PL +AA G + +RLL+ A QD G T LH L
Sbjct: 119 YY---------------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
Query: 203 RGN-VEAC----TVLVHAG---TKQELTAKDKAGLTPTQLAYDKG 239
+ N AC +L + G K + GLTP +LA +G
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 23 NQAAVTDVFSASAYGDFEKLRKFVEE-DGASVSRPDGNGYFALQWAALNNFADIAQYIID 81
N + + +S G+F+ +++ + E D S+ P+ G AL A +I ++++
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 82 HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
G +VNA D++G T LH AA ++ V LV++GA V A
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP 196
G+ + I+ + D ++EG + LH A G + ++ L+ + D DG TP
Sbjct: 48 GEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 197 LHWAALRGNVEACTVLVHAGTKQ-ELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252
LH AA NV+ C LV +G +T D ++G+ Q + +L Q
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%)
Query: 67 AALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHG 126
++L D+ Q II D + ++ G TALH A G + LVQ G V AAD G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 127 YRAVHVAAQYGQTSFLNHIV 146
+ +H AA +V
Sbjct: 104 WTPLHCAASCNNVQVCKFLV 123
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
G A+H A G T + +V ++ + +A+D++G +PLH AA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAA 111
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 30 VFSASAYGDFEKLRKFVEE-DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
+ +S G+F+ +++ + E D S+ P+ G AL A +I ++++ G +VNA
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 89 TDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
D++G T LH AA ++ V LV++GA V A
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 45/110 (40%)
Query: 37 GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
G LRK E A R N L ++L D+ Q II D + ++ G TA
Sbjct: 14 GKRTNLRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 73
Query: 97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
LH A G + LVQ G V AAD G+ +H AA +V
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP 196
G+ + I+ + D ++EG + LH A G + ++ L+ + D DG TP
Sbjct: 48 GEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 197 LHWAALRGNVEACTVLVHAGTKQ-ELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252
LH AA NV+ C LV +G +T D ++G+ Q + +L Q
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 54 SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLV 113
S P+ G +L N I HG V N L +++ G + ++
Sbjct: 1 SMPEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLALLLDSSLEGEFDLVQRII 57
Query: 114 QNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
+ G A+H A G T + +V ++ + +A+D++G +PLH AA
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAA 111
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
GA+ D G+ + AA F D Q ++++ DVN DN G LH AA G + V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 110 DVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
+ LV++ A V + G A +A YG+ N +V+ A+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN 159
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
A+ D D G + +H AA GF DT++ LL A +D +G PLH AA G++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
LV T + ++ G T LA G +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + R LL R A+ +D+ G +H AA G ++ L+ + ++ +D G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE--NQADVNIEDNEGNL 105
Query: 231 PTQLAYDKGHRQVALYL---SNAQHMHRNHWGDKIC 263
P LA +GH +V +L + + HRNH GD C
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 99 WAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN 158
WA G + V G V G + +H AA GQ L ++ K AD +A D
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDK 66
Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
+PL A Y+G ++LLL + A + + DG T L
Sbjct: 67 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
GR PLH+AA G + + LL + A DK TPL A G+V +L+ G +
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 220 ELTAKDKAGLT 230
T K GLT
Sbjct: 95 --TVKGPDGLT 103
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 37 GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
GD ++++ +V + G V+R G L +AA +I ++++ G D+NA D + T
Sbjct: 13 GDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 71
Query: 97 LHWAAVRGSIAVADVLVQNGA 117
L A G ++ +L+ GA
Sbjct: 72 LLSAVYEGHVSCVKLLLSKGA 92
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKD 225
WA G D ++ + + R + G PLH+AA G +E L+ G ++ A D
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA--DINAPD 65
Query: 226 KAGLTPTQLAYDKGH 240
K +TP A +GH
Sbjct: 66 KHHITPLLSAVYEGH 80
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
GA+ D G+ + AA F D Q +++ DVN DN G LH AA G + V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 110 DVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
+ LV++ A V + G A +A YG+ N +V+ A+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN 159
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
A+ D D G + +H AA GF DT++ LL A +D +G PLH AA G++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
LV T + ++ G T LA G +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + R LL R A+ +D+ G +H AA G ++ L+ + ++ +D G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE--FQADVNIEDNEGNL 105
Query: 231 PTQLAYDKGHRQVALYL---SNAQHMHRNHWGDKIC 263
P LA +GH +V +L + + HRNH GD C
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
A+ D D G + +H AA GF DT++ LL A +D +G PLH AA G++
Sbjct: 61 ANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
LV T + ++ G T LA G +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
GA+ D G + AA F D Q +++ DVN DN G LH AA G + V
Sbjct: 60 GANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 110 DVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
+ LV++ A V + G A +A YG+ N +V+ A+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN 159
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + R LL R A+ +D+ G +H AA G ++ L+ + ++ +D G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLE--FQADVNIEDNEGNL 105
Query: 231 PTQLAYDKGHRQVALYL---SNAQHMHRNHWGDKIC 263
P LA +GH +V +L + + HRNH GD C
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEAC 209
HAD +A D+ G+S LHWAA D +LL A++ Q+ TPL AA G+ E
Sbjct: 38 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETA 97
Query: 210 TVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
VL+ +++T D P +A ++ H + L
Sbjct: 98 KVLLDHFANRDIT--DHMDRLPRDIAQERMHHDIVRLL 133
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 79 IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ 138
+I+ DVNA D+ G++ALHWAA ++ A VL++NGA + + + +AA+ G
Sbjct: 34 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGS 93
Query: 139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179
++ + A+ D +D+ R P A + D +RLL
Sbjct: 94 YE-TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
GA+ D G+ + AA F D Q +++ DVN DN G LH AA G + V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 110 DVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
+ LV++ A V + G A +A YG+ N +V+ A+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN 159
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
A+ D D G + +H AA GF DT++ LL A +D +G PLH AA G++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
LV T + ++ G T LA G +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + R LL R A+ +D+ G +H AA G ++ L+ + ++ +D G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE--FQADVNIEDNEGNL 105
Query: 231 PTQLAYDKGHRQVALYL---SNAQHMHRNHWGDKIC 263
P LA +GH +V +L + + HRNH GD C
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 8/180 (4%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
+ A+ G+ E +++ V+E S+P+ G AL A I ++I G +VN+
Sbjct: 25 LLDAALTGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAK 148
D++G T LH AA + LVQ+GA + A + G A Y + + + A
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY-REGYAD--CAT 140
Query: 149 YHADYDAS---DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN 205
Y AD + S N G W F D + + R+D T WAAL G
Sbjct: 141 YLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQ 200
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
AA G+ + V + + D + EG + LH A + L+ A+ D
Sbjct: 28 AALTGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86
Query: 193 GCTPLHWAALRGNVEACTVLV-HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
G TPLH AA + C LV H T D A Y +G+ A YL++ +
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE 146
Query: 252 H 252
Sbjct: 147 Q 147
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
G + R LL R A+ +D+ G +H AA G ++ L+ + ++ +D G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLE--FQADVNIEDNEGNL 105
Query: 231 PTQLAYDKGHRQVALYL---SNAQHMHRNHWGDKIC 263
P LA +GH +V +L + + HRNH GD C
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
GA+ D G+ + AA D Q +++ DVN DN G LH AA G + V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 110 DVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
+ LV++ A V + G A +A YG+ N +V+ A+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN 159
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
A+ D D G + +H AA G DT++ LL A +D +G PLH AA G++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
LV T + ++ G T LA G +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 75 IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVA 133
++Q + D DV+A D NG+TAL + A GS +L + GA ++ D+ G A+H+A
Sbjct: 60 LSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
A Y + + +V + AD + D G + L A
Sbjct: 118 AGYVRPEVVEALV-ELGADIEVEDERGLTALELA 150
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD-KDGCTPLHWAALRGNVEACT 210
D DA D GR+ L + A G +RLL A +D + G T LH AA E
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYD 237
LV G E+ +D+ GLT +LA +
Sbjct: 128 ALVELGADIEV--EDERGLTALELARE 152
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 31 FSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90
++A+ D + L + +E+ V D NG AL + A + + + G D++ D
Sbjct: 49 WTAARKADEQALSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106
Query: 91 -NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
G TALH AA V + LV+ GA +E D G A+ +A + +T+
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 157
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 34/130 (26%)
Query: 66 WAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
WA N D + + G DVN T G+ LH+AA G + + + L+ GA + A D H
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
HI +PL A Y+G ++LLL + A
Sbjct: 73 ------------------HI----------------TPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 186 QGRQDKDGCT 195
+ + DG T
Sbjct: 99 KTVKGPDGLT 108
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
GR PLH+AA G + + LL + A DK TPL A G+V +L+ G +
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 220 ELTAKDKAGLT 230
T K GLT
Sbjct: 100 --TVKGPDGLT 108
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 37 GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
GD ++++ +V + G V+R G L +AA +I ++++ G D+NA D + T
Sbjct: 18 GDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76
Query: 97 LHWAAVRGSIAVADVLVQNGA 117
L A G ++ +L+ GA
Sbjct: 77 LLSAVYEGHVSCVKLLLSKGA 97
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKD 225
WA G D ++ + + R + G PLH+AA G +E L+ G ++ A D
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA--DINAPD 70
Query: 226 KAGLTPTQLAYDKGH 240
K +TP A +GH
Sbjct: 71 KHHITPLLSAVYEGH 85
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
LH AA RG+++ + N V D G A++ A G + + + + + +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDA 184
+ G + LH AA+KG+AD ++LLL + A
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 130 VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR-DASQGR 188
+H AA+ G S+L + + D G + L+WA + G D + L + + +
Sbjct: 77 LHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 189 QDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD 237
Q+K G T LH AA +G + +L+ G + +L +K +LA+D
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK------KLAFD 178
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNA 88
+ A+ G+ LR+ ++ + V+ D G AL WA DI + + ++N
Sbjct: 77 LHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 89 TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
+ G TALH AA +G + +L+ GAR + ++ A A S L
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLL 189
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQEL 221
+PLH AA +G +R L DK G T L+WA G+ + L EL
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF-TQPNIEL 133
Query: 222 TAKDKAGLTPTQLAYDKGHRQVALYL 247
++K G T A KG+ + L
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLL 159
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 75 IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVA 133
++Q + D DV+A D NG+TAL + A GS +L + GA ++ D+ G A+H+A
Sbjct: 61 LSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
A Y + + +V + AD + D G + L A
Sbjct: 119 AGYVRPEVVEALV-ELGADIEVEDERGLTALELA 151
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD-KDGCTPLHWAALRGNVEACT 210
D DA D GR+ L + A G +RLL A +D + G T LH AA E
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYD 237
LV G ++ +D+ GLT +LA +
Sbjct: 129 ALVELGA--DIEVEDERGLTALELARE 153
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 31 FSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90
++A+ D + L + +E+ V D NG AL + A + + + G D++ D
Sbjct: 50 WTAARKADEQALSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107
Query: 91 -NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
G TALH AA V + LV+ GA +E D G A+ +A + +T+
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
SD+E +H AA KG D +R L+ S Q++ GCT LH A G V+ L
Sbjct: 16 SDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 216 GTKQEL 221
G L
Sbjct: 76 GEVHSL 81
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 32/179 (17%)
Query: 89 TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI--V 146
+D+ +H AA +G L++ G + G A+H+A ++G ++ V
Sbjct: 16 SDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD-------------- 192
+ H+ + G+ P+H A D + L+ +G+ +
Sbjct: 76 GEVHSLW-----HGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIG 130
Query: 193 -------GCTPLHWAALRGN--VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQ 242
G T LHW G +E +LV G TAKDKA TP A + +R+
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASP--TAKDKADETPLXRAXEFRNRE 187
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 14/140 (10%)
Query: 92 NGQTALHWAAVRGS--IAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLN----HI 145
GQTALHW G + +LVQ GA A D + A ++ L+ +
Sbjct: 137 KGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTV 196
Query: 146 VAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN 205
+K D ++ +G S LHWA + D + +D + PL+ +
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLS----- 251
Query: 206 VEACTVLVHAGTKQELTAKD 225
V A VL+ TK+ L D
Sbjct: 252 VRAAXVLL---TKELLQKTD 268
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN 115
GN + L WA L N+ D+A ++ G DVN DN L+ + + + L+Q
Sbjct: 211 GNSH--LHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELLQK 266
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 38/152 (25%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA RG + L++ GA A + +G R + V ++ + ++ + A+ + +D
Sbjct: 19 AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAEPNCADPA 76
Query: 160 GRS-PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218
+ P+H AA +GF DT+ VL AG +
Sbjct: 77 TLTRPVHDAAREGFLDTL---------------------------------VVLHRAGAR 103
Query: 219 QELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
L +D G P LA + GHR VA YL A
Sbjct: 104 --LDVRDAWGRLPVDLAEELGHRDVARYLRAA 133
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 86 VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
+NA D+NG T L+ AA G+I++ D L+ GA A+ G R V A
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 38/152 (25%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
AA RG + L++ GA A + +G R + V ++ + ++ + A+ + +D
Sbjct: 19 AAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAEPNCADPA 76
Query: 160 GRS-PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218
+ P+H AA +GF DT+ VL AG +
Sbjct: 77 TLTRPVHDAAREGFLDTL---------------------------------VVLHRAGAR 103
Query: 219 QELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
L +D G P LA + GHR VA YL A
Sbjct: 104 --LDVRDAWGRLPVDLAEELGHRDVARYLRAA 133
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 56/225 (24%)
Query: 59 NGYFALQWAALNNFADIAQYIIDHGGD---VNATDNNGQTALHWAAVRGSIAVADVLVQN 115
+G AL A ++ +++ ++ ++ GQTALH AA+ G + + L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 116 GARVEAADVHGYRAVHVAAQY-GQTSFLNHIVAKYHADYDASDN---------------- 158
GA V A+ G+ A+H+A + T + + DASD
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 159 -----------------------------EGRSPLHWAAYKGFADTIRLLLFRDASQGRQ 189
+G +PLH A A+ +RLL RDA
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL--RDAGADLN 185
Query: 190 DKD---GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP 231
+ G TPLH A +L+ AG + TA+ G TP
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGA--DPTARMYGGRTP 228
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 118 RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE-GRSPLHWAAYKGFADTI 176
++EA + G+ +HVA + + ++ AD + + GR+PLH A A +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
LLL A + G TPL A LR N +L G + DK
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 86 VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQYGQTSFLNH 144
+ A + +G T LH A + + +L GA + + G +H+A + S L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE- 209
Query: 145 IVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP 196
++ K AD A GR+PL A + RLL A + D +P
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 56/225 (24%)
Query: 59 NGYFALQWAALNNFADIAQYIIDHGGD---VNATDNNGQTALHWAAVRGSIAVADVLVQN 115
+G AL A ++ +++ ++ ++ GQTALH AA+ G + + L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 116 GARVEAADVHGYRAVHVAAQY-GQTSFLNHIVAKYHADYDASDN---------------- 158
GA V A+ G+ A+H+A + T + + DASD
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 159 -----------------------------EGRSPLHWAAYKGFADTIRLLLFRDASQGRQ 189
+G +PLH A A+ +RLL RDA
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL--RDAGADLN 185
Query: 190 DKD---GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP 231
+ G TPLH A +L+ AG + TA+ G TP
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGA--DPTARMYGGRTP 228
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 118 RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE-GRSPLHWAAYKGFADTI 176
++EA + G+ +HVA + + ++ AD + + GR+PLH A A +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
LLL A + G TPL A LR N +L G + DK
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 86 VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQYGQTSFLNH 144
+ A + +G T LH A + + +L GA + + G +H+A + S L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE- 209
Query: 145 IVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP 196
++ K AD A GR+PL A + RLL A + D +P
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGN-GYFALQWAALNNFADIAQY 78
+ +N T + A + D E +R + + GA +++P+ G L A A + +
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 79 IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA 117
++ G D A G+T L A +R + +A +L +GA
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 46/156 (29%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHV----AAQYGQTSFLNHIVAKYHADYDA 155
AA RG + L++ GA A + G R + V +AQ + L + A+ +
Sbjct: 19 AAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLL------HGAEPNC 72
Query: 156 SDNEGRS-PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH 214
+D + P+H AA +GF DT+ + LH A R ++ C
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVV------------------LHRAGAR--LDVC----- 107
Query: 215 AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
D G P LA ++GHR +A YL A
Sbjct: 108 ----------DAWGRLPVDLAEEQGHRDIARYLHAA 133
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 68 ALNNFADIAQYIIDHGGDVNATDNNGQTALHWA---AVRGSIAVADVLVQNGARVEAADV 124
A N D Q + G D A + + LH A A + S+ + D ++QNG ++A
Sbjct: 170 AFANGQDFGQPL--PGPDAQAPE---ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA 224
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179
G A+H AA Y Q L ++ K A + G + L A K + LL
Sbjct: 225 DGNTALHYAALYNQPDCLK-LLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%)
Query: 42 LRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101
L F+ ++G + +G AL +AAL N D + ++ V + G+TAL A
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267
Query: 102 VRGSIAVADVLVQNGARVEAADVH 125
+ ++L Q A A +H
Sbjct: 268 KKHHKECEELLEQAQAGTFAFPLH 291
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 57/148 (38%), Gaps = 36/148 (24%)
Query: 93 GQTALHWAAVRGSIAVADVLVQNGARVEA---------ADVHGY-----RAVHVAAQYGQ 138
GQTALH A R ++LV GA V A D GY + +AA Q
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 150
Query: 139 TSFLNHIVAKYH--ADYDASDNEGRSPLHWAAYKGFADTIR-----------LLLFRDAS 185
+N++ H AD D+ G + LH A AD R LLL + A
Sbjct: 151 PHIVNYLTENPHKKADMRRQDSRGNTVLH--ALVAIADNTRENTKFVTKMYDLLLLKCAR 208
Query: 186 -------QGRQDKDGCTPLHWAALRGNV 206
+ + DG +PL AA G +
Sbjct: 209 LFPDSNLEAVLNNDGLSPLMMAAKTGKI 236
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213
E PLH AA +++LLF + D G T L++A GN + + V
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFV 115
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 68 ALNNFADIAQYIIDHGGDVNATDNNGQTALHWA---AVRGSIAVADVLVQNGARVEAADV 124
A N D Q + G D A + + LH A A + S+ + D ++QNG ++A
Sbjct: 151 AFANGQDFGQPL--PGPDAQAPE---ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA 205
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179
G A+H AA Y Q L ++ K A + G + L A K + LL
Sbjct: 206 DGNTALHYAALYNQPDCLK-LLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%)
Query: 42 LRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101
L F+ ++G + +G AL +AAL N D + ++ V + G+TAL A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 102 VRGSIAVADVLVQNGARVEAADVH 125
+ ++L Q A A +H
Sbjct: 249 KKHHKECEELLEQAQAGTFAFPLH 272
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 93 GQTALHWAAVRGSIAVADVLVQNGARVEAA 122
GQTALH A R + + +LV+NGA V+AA
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAA 130
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 36/148 (24%)
Query: 93 GQTALHWAAVRGSIAVADVLVQNGARVEA---------ADVHGY-----RAVHVAAQYGQ 138
GQTALH A R ++LV+ GA V A D GY + +AA Q
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 139 TSFLNHIVAKYH--ADYDASDNEGRSPLHWAAYKGFADTIR-----------LLLFRDAS 185
++++ H AD D+ G + LH A AD R LLL + A
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLH--ALVAIADNTRENTKFVTKMYDLLLIKCAK 210
Query: 186 -------QGRQDKDGCTPLHWAALRGNV 206
+ + DG +PL AA G +
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKI 238
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 75 IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
I +++ + G+++ G TALH+ + + +L++ A +E A+ G + +A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 135 Q 135
+
Sbjct: 247 R 247
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 94 QTALHWAAV---RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH 150
+TALH A R S+ + D LVQN ++ G A+H L ++ +
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK-LLLRGK 228
Query: 151 ADYDASDNEGRSPLHWA 167
A + ++ G +PL A
Sbjct: 229 ASIEIANESGETPLDIA 245
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 161 RSPLHWAAYKGFADTIRLLLFRDASQGRQDKD---GCTPLHWAALRGNVEACTVLVHAGT 217
+ LH A ++ ++ F + G DK G T LH+ L N E +L+
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-- 227
Query: 218 KQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
K + +++G TP +A H L+ A
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 93 GQTALHWAAVRGSIAVADVLVQNGARVEAADV-------------HGYRAVHVAAQYGQT 139
G +ALH A + S+ +LV+NGA V A G + +AA Q
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 140 SFLNHIVAKYH--ADYDASDNEGRSPLH 165
+++++ H A A+D++G + LH
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVLH 182
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
D NG + AAVR SIA A+ ++ NG V+ DV
Sbjct: 308 DANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVK 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,912,385
Number of Sequences: 62578
Number of extensions: 713105
Number of successful extensions: 2490
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 423
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)