Query 009183
Match_columns 541
No_of_seqs 417 out of 3516
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 20:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 1.5E-40 5.3E-45 317.3 23.9 231 19-253 3-248 (253)
2 3aji_A 26S proteasome non-ATPa 100.0 6E-40 2E-44 308.6 26.5 226 24-252 4-229 (231)
3 1wdy_A 2-5A-dependent ribonucl 100.0 2.4E-39 8.1E-44 314.0 28.0 249 3-254 15-279 (285)
4 1k1a_A B-cell lymphoma 3-encod 100.0 5.4E-40 1.8E-44 310.8 22.4 229 20-251 3-239 (241)
5 3b7b_A Euchromatic histone-lys 100.0 9.7E-39 3.3E-43 301.5 28.4 228 18-249 3-231 (237)
6 2xai_A ASB-9, ankyrin repeat a 100.0 1.3E-38 4.3E-43 305.5 24.0 220 25-252 2-221 (261)
7 3d9h_A CDNA FLJ77766, highly s 100.0 2.5E-38 8.7E-43 307.3 26.4 227 17-251 50-276 (285)
8 3utm_A Tankyrase-1; tankyrase, 100.0 3.4E-38 1.2E-42 315.6 27.3 244 22-278 20-320 (351)
9 4b93_B Ankyrin repeat domain-c 100.0 2.4E-39 8.3E-44 311.1 16.9 223 20-247 5-235 (269)
10 1n11_A Ankyrin; clathrin, BAND 100.0 6.9E-38 2.3E-42 323.5 28.2 227 22-252 142-368 (437)
11 2fo1_E LIN-12 protein; beta-ba 100.0 1.4E-38 4.7E-43 321.4 21.4 228 23-253 122-371 (373)
12 1wdy_A 2-5A-dependent ribonucl 100.0 4E-37 1.4E-41 298.3 30.6 243 24-280 3-262 (285)
13 3ljn_A Hypothetical protein; a 100.0 4.1E-38 1.4E-42 317.2 24.0 230 19-254 13-270 (364)
14 1oy3_D Transcription factor in 100.0 5.7E-38 1.9E-42 304.2 23.4 217 20-240 3-270 (282)
15 1n11_A Ankyrin; clathrin, BAND 100.0 2.4E-37 8.1E-42 319.5 29.1 229 20-252 8-236 (437)
16 2dzn_A Probable 26S proteasome 100.0 1E-37 3.6E-42 292.5 23.3 218 26-249 2-226 (228)
17 3eu9_A Huntingtin-interacting 100.0 4E-37 1.4E-41 290.6 27.3 229 21-253 4-235 (240)
18 3d9h_A CDNA FLJ77766, highly s 100.0 2.2E-37 7.6E-42 300.7 25.4 229 21-254 10-248 (285)
19 1s70_B 130 kDa myosin-binding 100.0 8.3E-38 2.8E-42 305.9 21.1 223 22-247 36-284 (299)
20 4g8k_A 2-5A-dependent ribonucl 100.0 4.7E-37 1.6E-41 306.0 26.5 229 23-254 22-299 (337)
21 3utm_A Tankyrase-1; tankyrase, 100.0 5E-37 1.7E-41 307.1 25.9 242 4-253 35-334 (351)
22 2f8y_A Notch homolog 1, transl 100.0 6.1E-37 2.1E-41 286.3 21.7 212 37-252 2-215 (223)
23 4g8k_A 2-5A-dependent ribonucl 100.0 4.6E-36 1.6E-40 298.9 26.0 244 3-255 35-328 (337)
24 2f8y_A Notch homolog 1, transl 100.0 2.3E-35 7.9E-40 275.6 27.0 213 4-218 2-216 (223)
25 1yyh_A HN1;, notch 1, ankyrin 100.0 3.3E-36 1.1E-40 287.2 21.0 218 52-281 2-233 (253)
26 1oy3_D Transcription factor in 100.0 5.3E-36 1.8E-40 290.3 22.3 200 53-255 2-252 (282)
27 3b7b_A Euchromatic histone-lys 100.0 2.8E-35 9.4E-40 277.8 26.0 217 51-279 2-218 (237)
28 2xai_A ASB-9, ankyrin repeat a 100.0 2.9E-36 9.9E-41 289.0 19.0 239 4-248 14-258 (261)
29 3kea_A K1L; tropism, ANK repea 100.0 1.7E-36 5.8E-41 294.4 14.8 223 18-255 23-248 (285)
30 2fo1_E LIN-12 protein; beta-ba 100.0 2.8E-36 9.7E-41 304.5 16.3 244 21-280 89-355 (373)
31 1k1a_A B-cell lymphoma 3-encod 100.0 1.6E-34 5.4E-39 273.2 25.2 200 53-254 2-209 (241)
32 3hra_A Ankyrin repeat family p 100.0 1.4E-34 4.8E-39 265.7 24.0 193 24-216 3-201 (201)
33 3kea_A K1L; tropism, ANK repea 100.0 1.5E-35 5E-40 287.8 17.6 215 33-255 6-222 (285)
34 2rfa_A Transient receptor pote 100.0 1.6E-34 5.5E-39 271.7 24.0 210 25-255 2-224 (232)
35 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-36 6.2E-41 285.9 10.6 218 20-238 2-229 (236)
36 3ljn_A Hypothetical protein; a 100.0 5.4E-36 1.8E-40 301.7 14.6 245 4-252 31-313 (364)
37 2rfa_A Transient receptor pote 100.0 1.1E-34 3.6E-39 272.9 21.8 193 3-217 13-221 (232)
38 3hra_A Ankyrin repeat family p 100.0 5.4E-34 1.9E-38 261.8 24.1 192 58-251 3-201 (201)
39 3aji_A 26S proteasome non-ATPa 100.0 2.6E-34 8.9E-39 270.0 19.6 212 4-217 17-229 (231)
40 4b93_B Ankyrin repeat domain-c 100.0 3.9E-35 1.3E-39 281.8 12.2 214 3-217 21-243 (269)
41 1ikn_D Protein (I-kappa-B-alph 100.0 5.5E-35 1.9E-39 275.7 12.4 199 54-255 2-211 (236)
42 2dzn_A Probable 26S proteasome 100.0 2.6E-33 8.8E-38 262.6 23.4 192 60-254 2-201 (228)
43 2pnn_A Transient receptor pote 100.0 2.1E-34 7E-39 278.1 14.5 201 17-217 4-257 (273)
44 4gpm_A Engineered protein OR26 100.0 3.1E-33 1.1E-37 248.4 20.8 156 62-218 6-161 (169)
45 2etb_A Transient receptor pote 100.0 2.5E-34 8.6E-39 274.7 13.6 206 26-254 2-247 (256)
46 2etb_A Transient receptor pote 100.0 1E-33 3.4E-38 270.5 16.6 170 60-254 2-207 (256)
47 1s70_B 130 kDa myosin-binding 100.0 1.9E-33 6.6E-38 274.9 18.9 220 32-254 4-258 (299)
48 4gpm_A Engineered protein OR26 100.0 1.5E-32 5E-37 244.0 20.6 160 28-189 6-165 (169)
49 3eu9_A Huntingtin-interacting 100.0 1.8E-32 6.2E-37 258.5 22.2 214 3-218 19-235 (240)
50 2pnn_A Transient receptor pote 100.0 4.3E-33 1.5E-37 268.8 15.1 203 50-253 3-258 (273)
51 3jxi_A Vanilloid receptor-rela 100.0 8.2E-33 2.8E-37 264.8 14.1 211 24-254 3-251 (260)
52 1sw6_A Regulatory protein SWI6 100.0 2E-33 6.7E-38 278.3 9.6 231 7-253 33-308 (327)
53 3jxi_A Vanilloid receptor-rela 100.0 1.1E-31 3.8E-36 256.9 16.6 172 58-254 3-211 (260)
54 2rfm_A Putative ankyrin repeat 100.0 9.9E-31 3.4E-35 238.3 17.6 164 52-216 27-190 (192)
55 4hbd_A KN motif and ankyrin re 100.0 5.3E-31 1.8E-35 254.3 14.9 190 60-252 76-274 (276)
56 4hbd_A KN motif and ankyrin re 100.0 6.2E-31 2.1E-35 253.9 14.7 189 27-216 77-273 (276)
57 3v30_A DNA-binding protein rfx 100.0 2.4E-30 8.4E-35 231.2 16.4 168 28-231 4-171 (172)
58 3v30_A DNA-binding protein rfx 100.0 2.8E-30 9.7E-35 230.8 16.6 159 3-163 12-171 (172)
59 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.1E-29 3.7E-34 226.3 20.0 158 58-216 12-169 (169)
60 3v31_A Ankyrin repeat family A 100.0 7.8E-30 2.7E-34 226.7 18.0 158 59-217 2-159 (167)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 7.5E-30 2.6E-34 225.6 17.6 157 59-217 4-161 (162)
62 2rfm_A Putative ankyrin repeat 100.0 1.1E-29 3.9E-34 231.2 18.5 164 86-252 28-191 (192)
63 2vge_A RELA-associated inhibit 100.0 1.3E-32 4.5E-37 257.7 -3.9 199 43-246 2-206 (229)
64 3v31_A Ankyrin repeat family A 100.0 6.9E-29 2.4E-33 220.6 20.1 161 92-255 2-162 (167)
65 3f6q_A Integrin-linked protein 100.0 3.8E-29 1.3E-33 225.0 17.5 167 25-192 4-170 (179)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-28 4.1E-33 219.5 20.5 162 20-183 8-169 (169)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.9E-29 2.4E-33 219.3 17.9 159 24-185 3-162 (162)
68 1awc_B Protein (GA binding pro 100.0 1.3E-28 4.6E-33 215.4 18.6 150 61-212 3-152 (153)
69 1sw6_A Regulatory protein SWI6 100.0 6.6E-30 2.3E-34 252.9 10.7 202 27-239 98-327 (327)
70 3f6q_A Integrin-linked protein 100.0 8.7E-29 3E-33 222.7 16.8 166 58-226 3-169 (179)
71 3twr_A Tankyrase-2; ankyrin re 100.0 1E-28 3.4E-33 219.1 15.5 157 59-217 7-164 (165)
72 3twr_A Tankyrase-2; ankyrin re 100.0 8.3E-29 2.8E-33 219.6 15.0 161 22-184 4-164 (165)
73 2vge_A RELA-associated inhibit 100.0 1.1E-31 3.6E-36 251.5 -4.9 195 14-213 9-208 (229)
74 1awc_B Protein (GA binding pro 100.0 5.4E-28 1.9E-32 211.5 19.1 151 93-247 2-152 (153)
75 1bd8_A P19INK4D CDK4/6 inhibit 100.0 4.4E-28 1.5E-32 212.8 18.6 151 27-180 3-153 (156)
76 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.1E-28 2.1E-32 211.8 18.0 153 60-215 2-155 (156)
77 1ycs_B 53BP2, P53BP2; ankyrin 100.0 3.3E-29 1.1E-33 236.5 8.5 182 57-240 2-193 (239)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.7E-28 9.3E-33 230.2 7.3 209 23-236 2-226 (239)
79 2aja_A Ankyrin repeat family p 99.9 4.9E-29 1.7E-33 249.4 -3.8 219 23-254 89-345 (376)
80 1d9s_A Cyclin-dependent kinase 99.9 3.1E-26 1.1E-30 196.0 12.9 131 85-217 4-135 (136)
81 1d9s_A Cyclin-dependent kinase 99.9 4.6E-26 1.6E-30 195.0 13.3 134 50-185 2-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 2.9E-26 9.8E-31 201.2 12.1 144 54-199 6-150 (156)
83 3t8k_A Uncharacterized protein 99.9 7.1E-27 2.4E-31 210.9 8.4 159 26-216 6-177 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 7.5E-26 2.6E-30 198.6 11.2 145 87-235 6-151 (156)
85 3t8k_A Uncharacterized protein 99.9 3.6E-26 1.2E-30 206.3 7.5 154 94-252 7-178 (186)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 5.5E-24 1.9E-28 182.0 15.8 123 93-216 14-136 (136)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 4E-24 1.4E-28 182.8 14.9 125 58-183 12-136 (136)
88 2aja_A Ankyrin repeat family p 99.9 8.4E-27 2.9E-31 233.2 -2.2 194 28-244 67-270 (376)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.1E-24 2.4E-28 178.3 16.1 124 93-217 2-125 (126)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.1E-23 3.6E-28 177.2 16.3 126 59-185 1-126 (126)
91 3deo_A Signal recognition part 99.9 9.6E-24 3.3E-28 190.3 12.1 140 23-182 41-181 (183)
92 3c5r_A BARD-1, BRCA1-associate 99.9 4.9E-24 1.7E-28 182.5 9.3 125 55-180 5-129 (137)
93 3c5r_A BARD-1, BRCA1-associate 99.9 4.8E-24 1.6E-28 182.6 8.8 125 88-213 5-129 (137)
94 3deo_A Signal recognition part 99.9 1.3E-23 4.4E-28 189.5 12.0 140 57-215 41-181 (183)
95 3ui2_A Signal recognition part 99.9 3.7E-23 1.3E-27 195.5 12.7 109 25-135 44-153 (244)
96 3ui2_A Signal recognition part 99.9 4.3E-23 1.5E-27 195.0 13.0 140 58-216 43-183 (244)
97 2b0o_E UPLC1; arfgap, structur 99.9 4.9E-22 1.7E-26 193.5 17.7 142 91-241 149-299 (301)
98 2b0o_E UPLC1; arfgap, structur 99.9 1.2E-22 4E-27 197.9 12.6 140 60-206 151-299 (301)
99 3ehr_A Osteoclast-stimulating 99.9 5.4E-23 1.8E-27 191.5 8.5 129 58-187 71-200 (222)
100 3aaa_C Myotrophin, protein V-1 99.9 2.5E-22 8.6E-27 168.4 11.6 107 60-167 7-113 (123)
101 3aaa_C Myotrophin, protein V-1 99.9 2.8E-22 9.5E-27 168.1 11.0 113 23-136 4-116 (123)
102 3ehr_A Osteoclast-stimulating 99.9 9.1E-23 3.1E-27 190.0 8.6 129 90-218 70-198 (222)
103 1dcq_A PYK2-associated protein 99.8 1.5E-20 5.2E-25 180.8 17.5 191 56-253 62-263 (278)
104 3jue_A Arfgap with coiled-coil 99.8 1.3E-20 4.4E-25 187.6 13.9 149 89-238 195-347 (368)
105 1dcq_A PYK2-associated protein 99.8 5.6E-20 1.9E-24 176.9 17.6 190 22-218 62-263 (278)
106 3lvq_E ARF-GAP with SH3 domain 99.8 2.5E-20 8.4E-25 194.8 15.8 141 94-237 133-282 (497)
107 3jue_A Arfgap with coiled-coil 99.8 1.9E-20 6.4E-25 186.5 14.2 126 123-251 196-324 (368)
108 3lvq_E ARF-GAP with SH3 domain 99.8 5.3E-20 1.8E-24 192.2 16.6 137 59-202 131-276 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.5E-20 2.6E-24 145.0 12.2 89 60-148 2-90 (93)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.4E-19 8.1E-24 142.1 12.0 93 25-118 1-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 7.6E-20 2.6E-24 151.2 7.7 107 56-163 5-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 2.2E-19 7.4E-24 148.4 8.2 106 123-231 6-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.4E-17 4.6E-22 136.3 10.8 93 53-145 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.7E-16 5.9E-21 129.7 11.7 97 15-112 13-109 (110)
115 2ayj_A 50S ribosomal protein L 77.5 1.3 4.5E-05 29.3 2.2 27 365-391 19-45 (56)
116 3j21_g 50S ribosomal protein L 74.2 1.1 3.7E-05 29.4 1.1 27 365-391 14-40 (51)
117 1vfy_A Phosphatidylinositol-3- 65.0 2.3 8E-05 30.4 1.3 22 366-387 12-35 (73)
118 1x4u_A Zinc finger, FYVE domai 63.1 4 0.00014 30.1 2.3 22 366-387 15-38 (84)
119 1dvp_A HRS, hepatocyte growth 55.9 4.9 0.00017 35.8 2.1 30 357-388 155-186 (220)
120 1joc_A EEA1, early endosomal a 53.9 4.4 0.00015 32.5 1.2 22 366-387 70-93 (125)
121 1wfk_A Zinc finger, FYVE domai 51.8 4.7 0.00016 30.0 1.0 22 366-387 10-33 (88)
122 1z2q_A LM5-1; membrane protein 47.3 10 0.00035 27.8 2.3 23 365-387 21-45 (84)
123 2yw8_A RUN and FYVE domain-con 44.8 7.8 0.00027 28.3 1.3 22 366-387 20-43 (82)
124 3t7l_A Zinc finger FYVE domain 40.6 15 0.00051 27.3 2.3 23 365-387 20-44 (90)
125 3zyq_A Hepatocyte growth facto 38.8 12 0.00042 33.3 1.9 30 357-388 158-189 (226)
126 2cr8_A MDM4 protein; ZF-ranbp 37.3 13 0.00044 24.0 1.2 18 368-385 14-31 (53)
127 2pg3_A Queuosine biosynthesis 33.9 14 0.00048 33.0 1.5 18 375-392 191-208 (232)
128 2c6a_A Ubiquitin-protein ligas 31.5 19 0.00065 22.7 1.2 19 367-385 15-33 (46)
129 1y02_A CARP2, FYVE-ring finger 28.2 11 0.00037 29.8 -0.3 22 366-387 20-43 (120)
130 2jrp_A Putative cytoplasmic pr 27.6 11 0.00039 27.2 -0.2 19 368-387 21-39 (81)
131 3bl5_A Queuosine biosynthesis 26.9 22 0.00077 31.1 1.5 18 375-392 188-205 (219)
132 1h7d_A Aminolevulinic acid syn 26.1 20 0.00068 23.1 0.7 14 391-404 6-19 (49)
133 3u5e_m 60S ribosomal protein L 25.0 22 0.00074 28.4 0.9 23 366-388 94-118 (128)
134 4g26_A Pentatricopeptide repea 24.7 64 0.0022 32.6 4.6 141 29-179 32-197 (501)
135 3zrh_A Ubiquitin thioesterase 24.6 1.5E+02 0.0052 28.7 6.6 21 31-51 27-47 (454)
136 3mkq_B Coatomer subunit alpha; 23.4 3.3E+02 0.011 22.9 8.7 53 25-83 7-60 (177)
137 2elu_A Zinc finger protein 406 23.0 13 0.00045 21.2 -0.5 8 380-387 10-17 (37)
138 3gj3_B Nuclear pore complex pr 22.1 34 0.0012 20.0 1.1 19 368-386 10-28 (33)
139 1wfl_A Zinc finger protein 216 21.3 1.2E+02 0.004 21.5 3.9 38 366-404 26-68 (74)
140 2knc_B Integrin beta-3; transm 21.1 1.6E+02 0.0053 21.1 4.7 38 455-492 12-49 (79)
141 1gp8_A Protein (scaffolding pr 20.2 70 0.0024 19.2 2.2 21 27-47 14-34 (40)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.5e-40 Score=317.28 Aligned_cols=231 Identities=29% Similarity=0.383 Sum_probs=186.6
Q ss_pred CCCCCCcchhhHHHHHHcC-------------CHHHHHHHHHhcCCCC-ccCCCCCchHHHHHHHcCcHHHHHHHHhCCC
Q 009183 19 NQNDNQAAVTDVFSASAYG-------------DFEKLRKFVEEDGASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGG 84 (541)
Q Consensus 19 ~~~~~~~~~~~L~~A~~~g-------------~~~~v~~ll~~~~~~~-~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~ 84 (541)
.+..+..|.||||.|+..| +.+.++.|++. +.++ +..|.+|.||||+|+..|+.+++++|+++|+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 3456788999999999987 89999999987 5555 4568999999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCC-CCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcH
Q 009183 85 DVNATDNNGQTALHWAAVRGSIAVADVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSP 163 (541)
Q Consensus 85 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 163 (541)
+++.++..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~ 160 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSA 160 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence 999999999999999999999999999999997 8999999999999999999999999999986 99999999999999
Q ss_pred HHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHH
Q 009183 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243 (541)
Q Consensus 164 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i 243 (541)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|+||+++|+++|+.++
T Consensus 161 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga--~~~~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC--CccccccCCCCHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999998 678899999999999999999999
Q ss_pred HHHHHHhhhh
Q 009183 244 ALYLSNAQHM 253 (541)
Q Consensus 244 ~~~L~~~~~~ 253 (541)
+++|......
T Consensus 239 ~~~l~~~~~~ 248 (253)
T 1yyh_A 239 VRLLDLEHHH 248 (253)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHhhh
Confidence 9999876543
No 2
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6e-40 Score=308.59 Aligned_cols=226 Identities=27% Similarity=0.377 Sum_probs=217.9
Q ss_pred CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183 24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103 (541)
Q Consensus 24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~ 103 (541)
..+.++|+.|++.|+.+.++++++..+..++.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 45678999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183 104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD 183 (541)
Q Consensus 104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 183 (541)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 162 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999986 9999999999999999999999999999999999
Q ss_pred CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183 184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252 (541)
Q Consensus 184 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~ 252 (541)
++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|++.++.+++++|.++++
T Consensus 163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA--SIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 9999999999999999999999999999999998 778899999999999999999999999998765
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-39 Score=314.04 Aligned_cols=249 Identities=23% Similarity=0.258 Sum_probs=231.9
Q ss_pred CCceEEeeccccCCCCCCCC-CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHh
Q 009183 3 SSEIEVVSSTEAIPNENQND-NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIID 81 (541)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 81 (541)
.+++++++.+.+...+.... +..+.+|||.|++.|+.++++.|++. +.+++.+|.+|.||||+|+..|+.+++++|++
T Consensus 15 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 93 (285)
T 1wdy_A 15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93 (285)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45667777777665555544 77889999999999999999999876 89999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCcc----------ccCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 009183 82 HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA----------DVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151 (541)
Q Consensus 82 ~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~----------d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~ 151 (541)
+|++++..+..|.||||+|+..|+.+++++|+++|++++.+ +..|.||||.|+..|+.+++++|++..+.
T Consensus 94 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 173 (285)
T 1wdy_A 94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173 (285)
T ss_dssp TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC
T ss_pred cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999887 78899999999999999999999998899
Q ss_pred CcccCCCCCCcHHHHHHHhCc----HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCC
Q 009183 152 DYDASDNEGRSPLHWAAYKGF----ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH-AGTKQELTAKDK 226 (541)
Q Consensus 152 ~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~d~ 226 (541)
+++..|..|.||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|+ +++.+|.
T Consensus 174 ~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~--~~~~~~~ 251 (285)
T 1wdy_A 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI--EINDTDS 251 (285)
T ss_dssp CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC--CTTCCCT
T ss_pred CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC--CccccCC
Confidence 999999999999999999999 899999999999999999999999999999999999999999 777 7888999
Q ss_pred CCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183 227 AGLTPTQLAYDKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 227 ~g~t~l~~A~~~~~~~i~~~L~~~~~~~ 254 (541)
.|.|||++|++.|+.+++++|++++...
T Consensus 252 ~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~ 279 (285)
T 1wdy_A 252 DGKTALLLAVELKLKKIAELLCKRGAST 279 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred CCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 9999999999999999999999988754
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.4e-40 Score=310.82 Aligned_cols=229 Identities=24% Similarity=0.307 Sum_probs=212.7
Q ss_pred CCCCCcchhhHHHHHHcCCHHHHHHHHH---hcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183 20 QNDNQAAVTDVFSASAYGDFEKLRKFVE---EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96 (541)
Q Consensus 20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tp 96 (541)
...|..|.||||.|++.|+.+.++.+++ +.+.+++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3467889999999999999999999997 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhCCC----CCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCcHHHHHHHhC
Q 009183 97 LHWAAVRGSIAVADVLVQNGA----RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD-NEGRSPLHWAAYKG 171 (541)
Q Consensus 97 L~~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~~ 171 (541)
||+|+..|+.+++++|++.++ +++.+|..|.||||.|+..|+.+++++|++. +.+++..+ ..|.||||+|+..|
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcC
Confidence 999999999999999999987 8899999999999999999999999999987 89999888 88999999999999
Q ss_pred cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183 172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251 (541)
Q Consensus 172 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~ 251 (541)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|++.|+.++++.|.+.+
T Consensus 162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA--DSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC--CCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 9999999999999999999999999999999999999999999998 77889999999999999999999999987754
No 5
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.7e-39 Score=301.54 Aligned_cols=228 Identities=28% Similarity=0.406 Sum_probs=215.9
Q ss_pred CCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHH
Q 009183 18 ENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTAL 97 (541)
Q Consensus 18 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL 97 (541)
+.+..+..|.|||+.|+..|+.++++.|++. |.+++..+.+|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 81 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 3456778899999999999999999999876 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHhCC-CCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHH
Q 009183 98 HWAAVRGSIAVADVLVQNG-ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176 (541)
Q Consensus 98 ~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v 176 (541)
|+|+..|+.+++++|++.| .+++.+|..|.||||.|+..|+.+++++|++. |.+++.+|..|.||||+|+..|+.+++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 9999999999999999999 89999999999999999999999999999986 999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHH
Q 009183 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSN 249 (541)
Q Consensus 177 ~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~ 249 (541)
++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|+||+++|+++++.+.+..+.+
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS--DVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--CTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC--CCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 778899999999999999999866655544
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=305.47 Aligned_cols=220 Identities=23% Similarity=0.298 Sum_probs=205.6
Q ss_pred cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC
Q 009183 25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG 104 (541)
Q Consensus 25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g 104 (541)
+|.||||.|+..|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 578999999999999999999986 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 009183 105 SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184 (541)
Q Consensus 105 ~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 184 (541)
+.+++++|+++|++++. +..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 81 ~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 158 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158 (261)
T ss_dssp CHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 99999999999999985 45699999999999999999999987 99999999999999999999999999999999999
Q ss_pred CCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252 (541)
Q Consensus 185 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~ 252 (541)
+++. |..|.||||+|+..|+.+++++|+++|+ +++.+|.+|+||+++|++++ +++++|++.+.
T Consensus 159 ~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~ 221 (261)
T 2xai_A 159 DVNQ-GKGQDSPLHAVARTASEELACLLMDFGA--DTQAKNAEGKRPVELVPPES--PLAQLFLEREG 221 (261)
T ss_dssp CTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCGGGGSCTTC--THHHHHHHC-C
T ss_pred CCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCChhhhccccc--cHHHHHHhccC
Confidence 9995 8889999999999999999999999998 78889999999999999654 58888887644
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=307.32 Aligned_cols=227 Identities=23% Similarity=0.286 Sum_probs=213.4
Q ss_pred CCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183 17 NENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96 (541)
Q Consensus 17 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tp 96 (541)
.....++..|.||||.|+..|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~ 128 (285)
T 3d9h_A 50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 128 (285)
T ss_dssp CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred CcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 34556788899999999999999999999986 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHH
Q 009183 97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176 (541)
Q Consensus 97 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v 176 (541)
||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++
T Consensus 129 L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v 206 (285)
T 3d9h_A 129 LFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACV 206 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence 999999999999999999999998654 599999999999999999999986 999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251 (541)
Q Consensus 177 ~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~ 251 (541)
++|++.|++++. |..|.||||+|+..|+.+++++|+++|+ +++.+|..|+||+++|+ ++.+++++|+++.
T Consensus 207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGA--DTQAKNAEGKRPVELVP--PESPLAQLFLERE 276 (285)
T ss_dssp HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence 999999999995 8889999999999999999999999998 78889999999999999 4578999998873
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.4e-38 Score=315.59 Aligned_cols=244 Identities=27% Similarity=0.323 Sum_probs=221.1
Q ss_pred CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183 22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101 (541)
Q Consensus 22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~ 101 (541)
.+..+.++|+.|++.|+.+.+++++.+.+.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence 35567899999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC------------------------
Q 009183 102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD------------------------ 157 (541)
Q Consensus 102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d------------------------ 157 (541)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |.+++..+
T Consensus 100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~ 178 (351)
T 3utm_A 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999986 77766543
Q ss_pred ------------------------------CCCCcHHHHHHHh---CcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcC
Q 009183 158 ------------------------------NEGRSPLHWAAYK---GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRG 204 (541)
Q Consensus 158 ------------------------------~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g 204 (541)
..|.||||+|+.. +..+++++|++.|++++.+|..|.||||+|+..|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 258 (351)
T 3utm_A 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258 (351)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcC
Confidence 5677999999998 5689999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHH
Q 009183 205 NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFS 278 (541)
Q Consensus 205 ~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~ 278 (541)
+.+++++|+++|+ +++.+|..|.|||++|++.|+.+++++|++++.... .....|.+|+.++
T Consensus 259 ~~~~v~~Ll~~ga--~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~~~~g~tal~~a 320 (351)
T 3utm_A 259 HNDVMEVLHKHGA--KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS----------IISLQGFTAAQMG 320 (351)
T ss_dssp CHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHS
T ss_pred CHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------CcCCCCCChhhhh
Confidence 9999999999998 788899999999999999999999999999877543 1234467776665
No 9
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=311.12 Aligned_cols=223 Identities=25% Similarity=0.310 Sum_probs=179.0
Q ss_pred CCCCCcchhhHHHHHHcCCHHHHHHHHHhcCC-------CCccCCCCCchHHHHHHHcCcH-HHHHHHHhCCCCCCCCCC
Q 009183 20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGA-------SVSRPDGNGYFALQWAALNNFA-DIAQYIIDHGGDVNATDN 91 (541)
Q Consensus 20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-------~~~~~d~~g~t~Lh~A~~~~~~-~iv~~Ll~~g~~~~~~~~ 91 (541)
...|..+.++|+.||+.|+.++|+.||+.... .++..|..|.||||.|+..++. .+++.|++.|+++|.+|.
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~ 84 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ 84 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence 34566788999999999999999999976332 2567788899999999988765 588999999999999999
Q ss_pred CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC
Q 009183 92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG 171 (541)
Q Consensus 92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~ 171 (541)
+|.||||+|+..|+.+++++|++.|++++.++..|.||+|.|+..++.++++.|++. |++++.+|..|.||||+|+..|
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGG 163 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHH
Q 009183 172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247 (541)
Q Consensus 172 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L 247 (541)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|+|||++|+++++ ++++|
T Consensus 164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga--d~~~~d~~G~TpL~~A~~~~~--i~~lL 235 (269)
T 4b93_B 164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA--SVQVLNKRQRTAVDCAEQNSK--IMELL 235 (269)
T ss_dssp CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC--CSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence 9999999999999999999999999999999999999999999998 788899999999999988765 44444
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.9e-38 Score=323.54 Aligned_cols=227 Identities=27% Similarity=0.415 Sum_probs=112.7
Q ss_pred CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183 22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101 (541)
Q Consensus 22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~ 101 (541)
.+..+.+||+.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 142 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 220 (437)
T 1n11_A 142 MTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 220 (437)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence 333444444444444444444444432 4444444444444444444444444444444444444444444445555555
Q ss_pred HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183 102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181 (541)
Q Consensus 102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 181 (541)
..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++
T Consensus 221 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 299 (437)
T 1n11_A 221 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299 (437)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 55555555555555555444444555555555555555555555443 44445555555555555555555555555555
Q ss_pred cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183 182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252 (541)
Q Consensus 182 ~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~ 252 (541)
+|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.|||++|++.|+.+++++|++++.
T Consensus 300 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--d~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga 368 (437)
T 1n11_A 300 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA--DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368 (437)
T ss_dssp HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcC
Confidence 555555555555555555555555555555555554 344445555555555555555555555554443
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-38 Score=321.41 Aligned_cols=228 Identities=24% Similarity=0.325 Sum_probs=213.9
Q ss_pred CCcchhhHHHHHHcCCHHHHHHHHH-------hcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCch
Q 009183 23 NQAAVTDVFSASAYGDFEKLRKFVE-------EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQT 95 (541)
Q Consensus 23 ~~~~~~~L~~A~~~g~~~~v~~ll~-------~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t 95 (541)
+..|.||||.|+..|+.+.++.|+. +.|+++|.+|.+|.||||+|+..|+.++|++|+++|++++..+..|.|
T Consensus 122 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t 201 (373)
T 2fo1_E 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201 (373)
T ss_dssp CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence 3789999999999999998888774 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHhCC---CCCCccccCCChHHHHHHHcC---CHHHHHHHHHhcCCCccc--------CCCCCC
Q 009183 96 ALHWAAVRGSIAVADVLVQNG---ARVEAADVHGYRAVHVAAQYG---QTSFLNHIVAKYHADYDA--------SDNEGR 161 (541)
Q Consensus 96 pL~~A~~~g~~~~v~~Ll~~g---~~~~~~d~~g~t~l~~A~~~g---~~~~v~~Ll~~~~~~~~~--------~d~~g~ 161 (541)
|||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..+ +.+++++|++. +.+++. .|..|.
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~ 280 (373)
T 2fo1_E 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGR 280 (373)
T ss_dssp HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCC
T ss_pred HHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCC
Confidence 999999999999999999998 899999999999999999988 78999999987 888775 677899
Q ss_pred cHHHHHHHhCcHHHHHHHHhcC-CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCc
Q 009183 162 SPLHWAAYKGFADTIRLLLFRD-ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH 240 (541)
Q Consensus 162 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~ 240 (541)
||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.|||++|+++|+
T Consensus 281 t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--d~~~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 281 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNH 358 (373)
T ss_dssp CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSSCCCSSSCCHHHHHHHTTC
T ss_pred CHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CccCCCCCCCCHHHHHHHcCC
Confidence 9999999999999999999876 9999999999999999999999999999999998 788899999999999999999
Q ss_pred hHHHHHHHHhhhh
Q 009183 241 RQVALYLSNAQHM 253 (541)
Q Consensus 241 ~~i~~~L~~~~~~ 253 (541)
.+++++|+++++.
T Consensus 359 ~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 359 HNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHhcCcc
Confidence 9999999987653
No 12
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4e-37 Score=298.29 Aligned_cols=243 Identities=25% Similarity=0.354 Sum_probs=223.2
Q ss_pred CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccC-CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 009183 24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRP-DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAV 102 (541)
Q Consensus 24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~ 102 (541)
..|.++|+.|++.|+.+.++.|++. +.+++.. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 3578999999999999999999986 7888877 7889999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccC----------CCCCCcHHHHHHHhCc
Q 009183 103 RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS----------DNEGRSPLHWAAYKGF 172 (541)
Q Consensus 103 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~t~L~~A~~~~~ 172 (541)
.|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. +.+++.. +..|.||||+|+..|+
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 160 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999987 8888877 7889999999999999
Q ss_pred HHHHHHHHhc-CCCCCcccCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHH
Q 009183 173 ADTIRLLLFR-DASQGRQDKDGCTPLHWAALRGN----VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247 (541)
Q Consensus 173 ~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L 247 (541)
.+++++|++. |++++.+|..|.||||+|+..++ .+++++|+++|+ +++.+|..|.|||++|++.|+.+++++|
T Consensus 161 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC--CSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999987 99999999999999999999999 999999999998 7788999999999999999999999999
Q ss_pred HH-hhhhcccccccccccccccCCCCchhHHHHH
Q 009183 248 SN-AQHMHRNHWGDKICGRKTSDIGYAPILFSII 280 (541)
Q Consensus 248 ~~-~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i 280 (541)
++ .+.... .....|.+|+.++..
T Consensus 239 l~~~g~~~~----------~~~~~g~t~l~~A~~ 262 (285)
T 1wdy_A 239 LEQEHIEIN----------DTDSDGKTALLLAVE 262 (285)
T ss_dssp HHSSSCCTT----------CCCTTSCCHHHHHHH
T ss_pred HhccCCCcc----------ccCCCCCcHHHHHHH
Confidence 98 443221 233457888887764
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.1e-38 Score=317.19 Aligned_cols=230 Identities=21% Similarity=0.285 Sum_probs=215.1
Q ss_pred CCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHH
Q 009183 19 NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALH 98 (541)
Q Consensus 19 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~ 98 (541)
....+..|.|+||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++. .+|.||||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~ 89 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH 89 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence 344677899999999999999999999976 899999999999999999999999999999999996554 47899999
Q ss_pred HHHHhCCHHHHHHHHhC----CCCCCc-----------------cccCCChHHHHHHHcC--CHHHHHHHHHhcCCCccc
Q 009183 99 WAAVRGSIAVADVLVQN----GARVEA-----------------ADVHGYRAVHVAAQYG--QTSFLNHIVAKYHADYDA 155 (541)
Q Consensus 99 ~A~~~g~~~~v~~Ll~~----g~~~~~-----------------~d~~g~t~l~~A~~~g--~~~~v~~Ll~~~~~~~~~ 155 (541)
+|+..|+.+++++|++. |++++. +|..|.||||+|+..| +.+++++|++. |++++.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~ 168 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTA 168 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcc
Confidence 99999999999999999 888877 8999999999999999 99999999987 999999
Q ss_pred CCCCCCcHHHHHHHhCcHHHHHHHHhcCCC-----CCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCC
Q 009183 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDAS-----QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230 (541)
Q Consensus 156 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t 230 (541)
+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.|
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--d~~~~d~~g~t 246 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI--DVNMEDNEHTV 246 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC--CTTCCCTTSCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCC
Confidence 999999999999999999999999999999 99999999999999999999999999999998 77889999999
Q ss_pred HHHHHHhcCchHHHHHHHHhhhhc
Q 009183 231 PTQLAYDKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 231 ~l~~A~~~~~~~i~~~L~~~~~~~ 254 (541)
||++|++.|+.+++++|++++...
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHhChHHHHHHHHHcCCch
Confidence 999999999999999999987543
No 14
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.7e-38 Score=304.16 Aligned_cols=217 Identities=24% Similarity=0.232 Sum_probs=185.4
Q ss_pred CCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCC---CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183 20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGAS---VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96 (541)
Q Consensus 20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~---~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tp 96 (541)
...+..|.||||.|++.|+.++++.|++. +.+ ++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 34678899999999999999999999976 444 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhCCCC-----------------------------------------------CCccccCCChH
Q 009183 97 LHWAAVRGSIAVADVLVQNGAR-----------------------------------------------VEAADVHGYRA 129 (541)
Q Consensus 97 L~~A~~~g~~~~v~~Ll~~g~~-----------------------------------------------~~~~d~~g~t~ 129 (541)
||+|+..|+.+++++|+++|++ ++.+|..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 9999999999999999998865 66778889999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHH
Q 009183 130 VHVAAQYGQTSFLNHIVAKYHADYDASDNE-GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEA 208 (541)
Q Consensus 130 l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~ 208 (541)
||+|+..|+.+++++|++. |.+++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus 162 L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence 9999999999999999976 8889888854 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCcccCCCCCCHHHHHHhcCc
Q 009183 209 CTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH 240 (541)
Q Consensus 209 v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~ 240 (541)
+++|+++|+ +++.+|..|.||+++|.....
T Consensus 241 v~~Ll~~ga--~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 241 ARLLRAHGA--PEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHHTTC--CCCCCC---------------
T ss_pred HHHHHHcCC--CcCcCCCcccccccccCCccc
Confidence 999999998 678899999999999887543
No 15
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-37 Score=319.51 Aligned_cols=229 Identities=28% Similarity=0.368 Sum_probs=154.0
Q ss_pred CCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 009183 20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHW 99 (541)
Q Consensus 20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~ 99 (541)
+..+..|.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++.+|.||||+
T Consensus 8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 8 GGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp -------CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence 34556666777777777777777766654 66667667777777777777777777777777777777777777777777
Q ss_pred HHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Q 009183 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179 (541)
Q Consensus 100 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 179 (541)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ +.+.+..+..|.||||+|+..|+.+++++|
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 7777777777777777777777777777777777777777777776665 566666666667777777777777777777
Q ss_pred HhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183 180 LFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252 (541)
Q Consensus 180 l~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~ 252 (541)
+++|++++..+..|.||||+|+..|+.+++++|+++|+ +++..+..|.|||++|+..|+.+++++|++.+.
T Consensus 166 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC--CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 77777766666667777777777777777777776665 445556666666666666666666666666544
No 16
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1e-37 Score=292.55 Aligned_cols=218 Identities=23% Similarity=0.338 Sum_probs=202.8
Q ss_pred chhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCC--CCCCC-CCCCCchHHHHHHH
Q 009183 26 AVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHG--GDVNA-TDNNGQTALHWAAV 102 (541)
Q Consensus 26 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g--~~~~~-~~~~g~tpL~~A~~ 102 (541)
|.||||.|++.|+.+.++.+++..+...+.+|.+|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 5799999999999999999999866666778999999999999999999999999999 55555 77899999999999
Q ss_pred hCCHHHHHHHHhCC--CCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 009183 103 RGSIAVADVLVQNG--ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL 180 (541)
Q Consensus 103 ~g~~~~v~~Ll~~g--~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 180 (541)
.|+.+++++|+++| ++++.+|..|.||||.|+..|+.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred hcC-CCCCcccCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHH
Q 009183 181 FRD-ASQGRQDKDGCTPLHWAALRGNVEACTVLV-HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSN 249 (541)
Q Consensus 181 ~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~ 249 (541)
+.| ++++.+|..|.||||+|+..|+.+++++|+ ++|+ +++.+|..|+||+++|.+. +++++|.+
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga--~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA--EYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC--CSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--CCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 999 999999999999999999999999999999 8898 7888999999999999765 56666654
No 17
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=290.58 Aligned_cols=229 Identities=34% Similarity=0.554 Sum_probs=215.0
Q ss_pred CCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCchHHHH
Q 009183 21 NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDN-NGQTALHW 99 (541)
Q Consensus 21 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~-~g~tpL~~ 99 (541)
..+..+.++|+.|++.|+.+.++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 4577889999999999999999999976 899999999999999999999999999999999999887654 49999999
Q ss_pred HHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc-HHHHHH
Q 009183 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF-ADTIRL 178 (541)
Q Consensus 100 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-~~~v~~ 178 (541)
|+..|+.+++++|++.|++++.+|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..+. .+++++
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 161 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 99999999999999999997776 799999
Q ss_pred HHhcCCCCCcccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183 179 LLFRDASQGRQDK-DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM 253 (541)
Q Consensus 179 Ll~~g~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~ 253 (541)
|++.|++++..+. .|.||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|++.|+.+++++|++.+..
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA--NVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC--CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 9999999999997 89999999999999999999999998 7788999999999999999999999999988764
No 18
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=300.67 Aligned_cols=229 Identities=17% Similarity=0.188 Sum_probs=187.1
Q ss_pred CCCCcchhhHHHHHHcCCHHHHHHHHHhc----------CCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 009183 21 NDNQAAVTDVFSASAYGDFEKLRKFVEED----------GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90 (541)
Q Consensus 21 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~----------~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~ 90 (541)
.....+.+++|.|+..|+.+.+..++... ...++.+|.+|.||||+|+..|+.+++++|+++|++++.++
T Consensus 10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~ 89 (285)
T 3d9h_A 10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT 89 (285)
T ss_dssp --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC
T ss_pred ccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 34557899999999999998888876543 23467789999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHh
Q 009183 91 NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170 (541)
Q Consensus 91 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~ 170 (541)
.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.+++..+ .|.||||+|+..
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~-~g~t~L~~A~~~ 167 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPES-DLASPIHEAARR 167 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCSC-TTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCCC-CCCCHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999986 88877544 599999999999
Q ss_pred CcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHh
Q 009183 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250 (541)
Q Consensus 171 ~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~ 250 (541)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++ .|..|.|||++|++.|+.+++++|++.
T Consensus 168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA--DVN-QGKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC--CTT-CCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC--CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999998 444 488999999999999999999999998
Q ss_pred hhhc
Q 009183 251 QHMH 254 (541)
Q Consensus 251 ~~~~ 254 (541)
+...
T Consensus 245 gad~ 248 (285)
T 3d9h_A 245 GADT 248 (285)
T ss_dssp TCCT
T ss_pred CCCC
Confidence 7644
No 19
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=8.3e-38 Score=305.93 Aligned_cols=223 Identities=28% Similarity=0.434 Sum_probs=205.3
Q ss_pred CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183 22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101 (541)
Q Consensus 22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~ 101 (541)
.+..+.++|+.|+..|+.+.++.|++. |.+++.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 455688999999999999999999976 8999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCccc--------------------------
Q 009183 102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA-------------------------- 155 (541)
Q Consensus 102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~-------------------------- 155 (541)
..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.++...+.+++.
T Consensus 115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194 (299)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence 999999999999999999999999999999999999999999888766665443
Q ss_pred CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHH
Q 009183 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235 (541)
Q Consensus 156 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A 235 (541)
.+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC--DMEAVNKVGQTAFDVA 272 (299)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCTTTSC
T ss_pred hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999998 7788999999999999
Q ss_pred HhcCchHHHHHH
Q 009183 236 YDKGHRQVALYL 247 (541)
Q Consensus 236 ~~~~~~~i~~~L 247 (541)
.+.....+.+++
T Consensus 273 ~~~~~~~l~~l~ 284 (299)
T 1s70_B 273 DEDILGYLEELQ 284 (299)
T ss_dssp CSGGGHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 875444444443
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.7e-37 Score=306.03 Aligned_cols=229 Identities=26% Similarity=0.292 Sum_probs=207.4
Q ss_pred CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCC-CCchHHHHHHHcCcHHHHHHHHhCCCCCC--------------
Q 009183 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDG-NGYFALQWAALNNFADIAQYIIDHGGDVN-------------- 87 (541)
Q Consensus 23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~-------------- 87 (541)
+..+.++|+.|+++|++++|+.||+. |+++|.++. .|.||||+|+..|+.++|++|+++|++++
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence 34578999999999999999999976 999998876 49999999999999999999999988654
Q ss_pred -------------------CCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCcc----------ccCCChHHHHHHHcCC
Q 009183 88 -------------------ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA----------DVHGYRAVHVAAQYGQ 138 (541)
Q Consensus 88 -------------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~----------d~~g~t~l~~A~~~g~ 138 (541)
..+..|.||||+|+..|+.+++++|+++|++++.+ +..|.||||+|++.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~ 180 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 180 (337)
T ss_dssp HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence 45667899999999999999999999999988754 4468999999999999
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc----HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH
Q 009183 139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF----ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH 214 (541)
Q Consensus 139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 214 (541)
.+++++|+++.|++++.+|..|.|++|.++..+. ..++++|+++|++++.+|..|.||||+|+..|+.++++.|++
T Consensus 181 ~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 9999999988899999999999999999876554 468899999999999999999999999999999999999998
Q ss_pred c-CCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183 215 A-GTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 215 ~-g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~ 254 (541)
. |+ +++.+|.+|+||||+|++.|+.+++++|++++...
T Consensus 261 ~~~~--~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~ 299 (337)
T 4g8k_A 261 QEHI--EINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299 (337)
T ss_dssp STTC--CTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred hcCC--cccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 6 55 78899999999999999999999999999987644
No 21
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5e-37 Score=307.11 Aligned_cols=242 Identities=24% Similarity=0.331 Sum_probs=216.9
Q ss_pred CceEEeecccc-CCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183 4 SEIEVVSSTEA-IPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82 (541)
Q Consensus 4 ~~~~~~~~l~~-~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 82 (541)
++.+.++.+.. .+.+....+..|.||||.|+..|+.++++.|++. |.+++.+|.+|.||||+|+..|+.+++++|+++
T Consensus 35 g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 113 (351)
T 3utm_A 35 GNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113 (351)
T ss_dssp TCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC
Confidence 34444444443 4556667788899999999999999999999976 899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc---------------------------------------
Q 009183 83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD--------------------------------------- 123 (541)
Q Consensus 83 g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d--------------------------------------- 123 (541)
|++++..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 114 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (351)
T 3utm_A 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAK 193 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999987654
Q ss_pred ---------------cCCChHHHHHHHc---CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 009183 124 ---------------VHGYRAVHVAAQY---GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185 (541)
Q Consensus 124 ---------------~~g~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 185 (541)
..|.||||.|+.. +..+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 194 ~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 272 (351)
T 3utm_A 194 VKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272 (351)
T ss_dssp HHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 4567999999998 447899999876 999999999999999999999999999999999999
Q ss_pred CCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM 253 (541)
Q Consensus 186 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~ 253 (541)
++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+++| +.+++++|.+....
T Consensus 273 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--d~~~~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGS--DPSIISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC--CCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 99999999999999999999999999999998 7788999999999998 66788888876543
No 22
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.1e-37 Score=286.34 Aligned_cols=212 Identities=29% Similarity=0.389 Sum_probs=135.6
Q ss_pred CCHHHHHHHHHhcCCCCccC-CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q 009183 37 GDFEKLRKFVEEDGASVSRP-DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN 115 (541)
Q Consensus 37 g~~~~v~~ll~~~~~~~~~~-d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 115 (541)
|+.++++.|++. +.+++.. |.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++
T Consensus 2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 444555555543 4444433 56666666666666666666666666666666666666666666666666666666666
Q ss_pred CC-CCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCC
Q 009183 116 GA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGC 194 (541)
Q Consensus 116 g~-~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 194 (541)
++ +++.++..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 159 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE 159 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence 65 5666666666666666666666666666654 666666666666666666666666666666666666666666666
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183 195 TPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252 (541)
Q Consensus 195 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~ 252 (541)
||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|++.++.+++++|++.+.
T Consensus 160 t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 160 TPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCC--CCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 66666666666666666666665 455566666666666666666666666666554
No 23
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.6e-36 Score=298.87 Aligned_cols=244 Identities=20% Similarity=0.213 Sum_probs=214.3
Q ss_pred CCceEEeeccccCCCCCCCCC-CcchhhHHHHHHcCCHHHHHHHHHhcCC------------------------------
Q 009183 3 SSEIEVVSSTEAIPNENQNDN-QAAVTDVFSASAYGDFEKLRKFVEEDGA------------------------------ 51 (541)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~L~~A~~~g~~~~v~~ll~~~~~------------------------------ 51 (541)
.+++++++.|.+.+.+.+..+ ..|.||||.|++.|+.++++.|++. |+
T Consensus 35 ~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (337)
T 4g8k_A 35 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113 (337)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred cCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence 567888888888777666554 4589999999999999999999875 43
Q ss_pred ---CCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCC----------CCCCchHHHHHHHhCCHHHHHHHHh-CCC
Q 009183 52 ---SVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT----------DNNGQTALHWAAVRGSIAVADVLVQ-NGA 117 (541)
Q Consensus 52 ---~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~----------~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~ 117 (541)
+++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++ .|+
T Consensus 114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga 193 (337)
T 4g8k_A 114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 193 (337)
T ss_dssp TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC
Confidence 45677888999999999999999999999999988754 3458999999999999999999996 699
Q ss_pred CCCccccCCChHHHHHHHcCC----HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhc-CCCCCcccCC
Q 009183 118 RVEAADVHGYRAVHVAAQYGQ----TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR-DASQGRQDKD 192 (541)
Q Consensus 118 ~~~~~d~~g~t~l~~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~ 192 (541)
+++.+|..|.|+++.++..++ ..++++|++. |++++.+|..|.||||+|+..|+.++++.|++. |++++.+|.+
T Consensus 194 d~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~ 272 (337)
T 4g8k_A 194 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 272 (337)
T ss_dssp CTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT
T ss_pred CcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC
Confidence 999999999999999887554 2467777765 999999999999999999999999999999975 8999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcc
Q 009183 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHR 255 (541)
Q Consensus 193 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~ 255 (541)
|+||||+|+..|+.++|++|+++|+ +++ +.+||++|+++|+.+++++|+++++..+
T Consensus 273 G~TpL~~A~~~g~~~iv~~Ll~~GA--d~n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 273 GKTALLLAVELKLKKIAELLCKRGA--STD-----CGDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHTTSC--SST-----TCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCC--CCC-----CCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 9999999999999999999999998 443 4569999999999999999999987654
No 24
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.3e-35 Score=275.63 Aligned_cols=213 Identities=23% Similarity=0.219 Sum_probs=200.1
Q ss_pred CceEEeeccccCCCCCCCC-CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183 4 SEIEVVSSTEAIPNENQND-NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82 (541)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~-~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 82 (541)
++.++++.+.+...+.... +..+.||||.|++.|+.+.++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 5678888888776666554 78899999999999999999999976 899999999999999999999999999999999
Q ss_pred CC-CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC
Q 009183 83 GG-DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR 161 (541)
Q Consensus 83 g~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 161 (541)
++ +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~ 159 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREE 159 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCc
Confidence 87 8899999999999999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred cHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183 162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218 (541)
Q Consensus 162 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~ 218 (541)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+.
T Consensus 160 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999984
No 25
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.3e-36 Score=287.23 Aligned_cols=218 Identities=24% Similarity=0.294 Sum_probs=167.3
Q ss_pred CCccCCCCCchHHHHHHHcC-------------cHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHhCCHHHHHHHHhCCC
Q 009183 52 SVSRPDGNGYFALQWAALNN-------------FADIAQYIIDHGGDVNAT-DNNGQTALHWAAVRGSIAVADVLVQNGA 117 (541)
Q Consensus 52 ~~~~~d~~g~t~Lh~A~~~~-------------~~~iv~~Ll~~g~~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 117 (541)
++|.+|.+|.||||+|+..| +.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 68899999999999999977 899999999999998654 7899999999999999999999999999
Q ss_pred CCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHH
Q 009183 118 RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197 (541)
Q Consensus 118 ~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL 197 (541)
+++.+|..|.||||+|+..|+.+++++|++....+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 99999999999999999999999999999885568999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHH
Q 009183 198 HWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILF 277 (541)
Q Consensus 198 h~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~ 277 (541)
|+|+..|+.+++++|+++|+ +++.+|..|.|||++|++.|+.+++++|++.+.... .....|.+|+.+
T Consensus 162 ~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----------~~d~~g~tpl~~ 229 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNGA--NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD----------ITDHMDRLPRDI 229 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTCCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc----------ccccCCCCHHHH
Confidence 99999999999999999998 778899999999999999999999999999876543 234457888888
Q ss_pred HHHH
Q 009183 278 SIII 281 (541)
Q Consensus 278 ~~i~ 281 (541)
+...
T Consensus 230 A~~~ 233 (253)
T 1yyh_A 230 AQER 233 (253)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7643
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.3e-36 Score=290.26 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=188.1
Q ss_pred CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCC---CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChH
Q 009183 53 VSRPDGNGYFALQWAALNNFADIAQYIIDHGGD---VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRA 129 (541)
Q Consensus 53 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~ 129 (541)
++.+|.+|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 467899999999999999999999999999998 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCC-----------------------------------------------CcccCCCCCCc
Q 009183 130 VHVAAQYGQTSFLNHIVAKYHA-----------------------------------------------DYDASDNEGRS 162 (541)
Q Consensus 130 l~~A~~~g~~~~v~~Ll~~~~~-----------------------------------------------~~~~~d~~g~t 162 (541)
||+|+..|+.+++++|++. +. +++.+|..|.|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 9999999999999999975 32 36778899999
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCCCCcccCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCch
Q 009183 163 PLHWAAYKGFADTIRLLLFRDASQGRQDKD-GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR 241 (541)
Q Consensus 163 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~ 241 (541)
|||+|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.+++++|+++|+ +++.+|..|.|||++|++.|+.
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~tpL~~A~~~~~~ 238 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA--DPTARMYGGRTPLGSALLRPNP 238 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHTSSCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC--CCcccccCCCCHHHHHHHcCCc
Confidence 999999999999999999999999999865 9999999999999999999999998 7888999999999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 009183 242 QVALYLSNAQHMHR 255 (541)
Q Consensus 242 ~i~~~L~~~~~~~~ 255 (541)
+++++|++++....
T Consensus 239 ~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 239 ILARLLRAHGAPEP 252 (282)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCcC
Confidence 99999999887654
No 27
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.8e-35 Score=277.81 Aligned_cols=217 Identities=22% Similarity=0.363 Sum_probs=202.1
Q ss_pred CCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHH
Q 009183 51 ASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAV 130 (541)
Q Consensus 51 ~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l 130 (541)
.+++.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 81 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHH
Q 009183 131 HVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210 (541)
Q Consensus 131 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~ 210 (541)
|+|+..|+.+++++|++..+.+++..|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 99999999999999998855899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHH
Q 009183 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSI 279 (541)
Q Consensus 211 ~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~ 279 (541)
+|+++|+ +++.+|..|.|||++|++.|+.+++++|++++.... .....|.+|+.++.
T Consensus 162 ~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~t~l~~A~ 218 (237)
T 3b7b_A 162 ILLAAKC--DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT----------LKNKEGETPLQCAS 218 (237)
T ss_dssp HHHTTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT----------CCCTTSCCHHHHSC
T ss_pred HHHHcCC--CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC----------ccCCCCCCHHHHHH
Confidence 9999998 778899999999999999999999999998876543 12345677776654
No 28
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=289.03 Aligned_cols=239 Identities=15% Similarity=0.156 Sum_probs=216.5
Q ss_pred CceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCC
Q 009183 4 SEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHG 83 (541)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g 83 (541)
++.++++.+.+.+.+.+..+..|.||||.|+..|+.++++.|++. |++++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus 14 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 92 (261)
T 2xai_A 14 GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 92 (261)
T ss_dssp TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 566777888887777888888999999999999999999999976 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcH
Q 009183 84 GDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSP 163 (541)
Q Consensus 84 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 163 (541)
++++.. .+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |.+++. |..|.||
T Consensus 93 ~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~-~~~g~t~ 169 (261)
T 2xai_A 93 ASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQDSP 169 (261)
T ss_dssp CCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH-TCCTTC-CBTTBCH
T ss_pred CCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCC-CCCCCCh
Confidence 999864 5699999999999999999999999999999999999999999999999999999987 899885 8899999
Q ss_pred HHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------CCcccCCCCCCHHHHHHh
Q 009183 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ------ELTAKDKAGLTPTQLAYD 237 (541)
Q Consensus 164 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~------~~~~~d~~g~t~l~~A~~ 237 (541)
||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.++ ++++.|++++++. ++..+|..|+||++.|.+
T Consensus 170 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~ 247 (261)
T 2xai_A 170 LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITK 247 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGG
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcc
Confidence 99999999999999999999999999999999999999655 5899999987753 345789999999999998
Q ss_pred cCchHHHHHHH
Q 009183 238 KGHRQVALYLS 248 (541)
Q Consensus 238 ~~~~~i~~~L~ 248 (541)
...++.++-++
T Consensus 248 ~~~p~~l~~~l 258 (261)
T 2xai_A 248 LVLPEDLKQFL 258 (261)
T ss_dssp SSSCHHHHHHH
T ss_pred cCCcHHHHHHH
Confidence 87776665443
No 29
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.7e-36 Score=294.39 Aligned_cols=223 Identities=17% Similarity=0.137 Sum_probs=200.5
Q ss_pred CCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHH
Q 009183 18 ENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTAL 97 (541)
Q Consensus 18 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL 97 (541)
..+..+..|.||||.|+..|+.+.++.|++. |.+++.+ +|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L 99 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL 99 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH
Confidence 3566788899999999999999999999876 8888877 489999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHhCCCCCCccccCC-ChHHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCcHHHHHHHhCcHHH
Q 009183 98 HWAAVRGSIAVADVLVQNGARVEAADVHG-YRAVHVAAQYGQTSFLNHIVAKYHADYDASDN-EGRSPLHWAAYKGFADT 175 (541)
Q Consensus 98 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g-~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~ 175 (541)
|+|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|++. +.+. .+. .|.||||+|+..|+.++
T Consensus 100 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~--~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST--FDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTT--CCCSTHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCcc--ccccCCccHHHHHHHcChHHH
Confidence 99999999999999999999999999999 7999999999999999999976 5544 333 78999999999999999
Q ss_pred HHHHHhcCCCCCcccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183 176 IRLLLFRDASQGRQDKDGCTP-LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 176 v~~Ll~~g~~~~~~d~~g~tp-Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~ 254 (541)
+++|+++|++++.+|..|.|| ||+|+..|+.+++++|+++|+ +++.+|. .|+..|+.+++++|++++...
T Consensus 177 v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga--d~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI--NIYSANL-------ENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp HHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB--CSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC--CCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence 999999999999999999998 999999999999999999998 5666663 567789999999999988765
Q ss_pred c
Q 009183 255 R 255 (541)
Q Consensus 255 ~ 255 (541)
.
T Consensus 248 ~ 248 (285)
T 3kea_A 248 K 248 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 30
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.8e-36 Score=304.45 Aligned_cols=244 Identities=22% Similarity=0.246 Sum_probs=213.4
Q ss_pred CCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCC-CCCchHHHHHHHcCcHHHHHHHH--------hCCCCCCCCCC
Q 009183 21 NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPD-GNGYFALQWAALNNFADIAQYII--------DHGGDVNATDN 91 (541)
Q Consensus 21 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll--------~~g~~~~~~~~ 91 (541)
..+..+.++||.|+..+. ++++.++ ..+++.+| ..|.||||+|+..|+.+++++|+ ++|++++.+|.
T Consensus 89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~---~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~ 164 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGSY-AITEPIT---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 164 (373)
T ss_dssp -----CCCHHHHHHHSSS-CCCSCCS---TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred CCCCCCccHHHHHhcCCc-hHHHHhc---cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 456778999999999664 6666654 35788888 79999999999999998887776 89999999999
Q ss_pred CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcC--CCcccCCCCCCcHHHHHHH
Q 009183 92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH--ADYDASDNEGRSPLHWAAY 169 (541)
Q Consensus 92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~--~~~~~~d~~g~t~L~~A~~ 169 (541)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++... .+++..|..|.||||+|+.
T Consensus 165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~ 244 (373)
T 2fo1_E 165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244 (373)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997521 6889999999999999999
Q ss_pred hC---cHHHHHHHHhcCCCCCc--------ccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCCCCCCHHHHHHh
Q 009183 170 KG---FADTIRLLLFRDASQGR--------QDKDGCTPLHWAALRGNVEACTVLVHAG-TKQELTAKDKAGLTPTQLAYD 237 (541)
Q Consensus 170 ~~---~~~~v~~Ll~~g~~~~~--------~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-~~~~~~~~d~~g~t~l~~A~~ 237 (541)
.+ +.+++++|+++|++++. .|..|.||||+|+..|+.+++++|++++ + +++.+|..|.|||++|++
T Consensus 245 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~n~~d~~g~TpL~~A~~ 322 (373)
T 2fo1_E 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS--NKDKQDEDGKTPIMLAAQ 322 (373)
T ss_dssp SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC--CTTCCCTTCCCHHHHHHH
T ss_pred hCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC--CccCcCCCCCCHHHHHHH
Confidence 98 89999999999999986 5678999999999999999999999886 5 788899999999999999
Q ss_pred cCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHH
Q 009183 238 KGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSII 280 (541)
Q Consensus 238 ~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i 280 (541)
.|+.+++++|++++.... .....|.+|+.++..
T Consensus 323 ~g~~~iv~~Ll~~gad~~----------~~d~~g~t~l~~A~~ 355 (373)
T 2fo1_E 323 EGRIEVVMYLIQQGASVE----------AVDATDHTARQLAQA 355 (373)
T ss_dssp HTCHHHHHHHHHTTCCSS----------CCCSSSCCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCcc----------CCCCCCCCHHHHHHH
Confidence 999999999999876543 123457788877764
No 31
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.6e-34 Score=273.17 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=185.7
Q ss_pred CccCCCCCchHHHHHHHcCcHHHHHHHHh----CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCh
Q 009183 53 VSRPDGNGYFALQWAALNNFADIAQYIID----HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYR 128 (541)
Q Consensus 53 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~----~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t 128 (541)
++.+|.+|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 81 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT 81 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 35678999999999999999999999997 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcC---CCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCccc-CCCCcHHHHHHHcC
Q 009183 129 AVHVAAQYGQTSFLNHIVAKYH---ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD-KDGCTPLHWAALRG 204 (541)
Q Consensus 129 ~l~~A~~~g~~~~v~~Ll~~~~---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~tpLh~A~~~g 204 (541)
|||+|+..|+.+++++|++... .+++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 9999999999999999998732 2888899999999999999999999999999999999999 78999999999999
Q ss_pred CHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183 205 NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 205 ~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~ 254 (541)
+.+++++|+++|+ +++.+|..|.|||++|++.|+.+++++|++.+...
T Consensus 162 ~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 209 (241)
T 1k1a_A 162 SLSMVQLLLQHGA--NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209 (241)
T ss_dssp CHHHHHHHHHTTC--CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence 9999999999998 77889999999999999999999999999987654
No 32
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-34 Score=265.71 Aligned_cols=193 Identities=22% Similarity=0.301 Sum_probs=146.1
Q ss_pred CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183 24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103 (541)
Q Consensus 24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~ 103 (541)
..+.++|+.|+..|+.+.++.++++.+.+++.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 34567777777777777777777776667777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHH-hCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc-----HHHHH
Q 009183 104 GSIAVADVLV-QNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF-----ADTIR 177 (541)
Q Consensus 104 g~~~~v~~Ll-~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-----~~~v~ 177 (541)
|+.+++++|+ +.+++++.+|..|.||||.|+..|+.+++++|++..+.+++.+|..|.||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 7777777777 45567777777777777777777777777777776437777777777777777777776 77777
Q ss_pred HHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183 178 LLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216 (541)
Q Consensus 178 ~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 216 (541)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 777777777777777777777777777777777777665
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.5e-35 Score=287.80 Aligned_cols=215 Identities=17% Similarity=0.128 Sum_probs=200.1
Q ss_pred HHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHH
Q 009183 33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVL 112 (541)
Q Consensus 33 A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 112 (541)
+++..+.+.++++|.+. +++.+|.+|.||||+|+..|+.+++++|+++|++++.. +|.||||+|+..|+.+++++|
T Consensus 6 ~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp TGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred HHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHH
Confidence 46678888999999874 68999999999999999999999999999999999988 489999999999999999999
Q ss_pred HhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC-CcHHHHHHHhCcHHHHHHHHhcCCCCCcccC
Q 009183 113 VQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEG-RSPLHWAAYKGFADTIRLLLFRDASQGRQDK 191 (541)
Q Consensus 113 l~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~ 191 (541)
+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..| .||||+|+..|+.+++++|+++|++.... .
T Consensus 82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~ 159 (285)
T 3kea_A 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-A 159 (285)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-S
T ss_pred HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-c
Confidence 999999999999999999999999999999999987 99999999999 89999999999999999999999877433 2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCH-HHHHHhcCchHHHHHHHHhhhhcc
Q 009183 192 DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP-TQLAYDKGHRQVALYLSNAQHMHR 255 (541)
Q Consensus 192 ~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~-l~~A~~~~~~~i~~~L~~~~~~~~ 255 (541)
.|.||||+|+..|+.+++++|+++|+ +++.+|..|.|| |++|++.|+.+++++|++++....
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga--d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDYMT--STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHH--HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred CCccHHHHHHHcChHHHHHHHHHcCC--CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 79999999999999999999999998 788899999998 999999999999999999876543
No 34
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.6e-34 Score=271.66 Aligned_cols=210 Identities=26% Similarity=0.299 Sum_probs=173.0
Q ss_pred cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCC-----CCCCCCCchHHHH
Q 009183 25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV-----NATDNNGQTALHW 99 (541)
Q Consensus 25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~-----~~~~~~g~tpL~~ 99 (541)
.|.||||.|++.|+.+.++.|++..+.+++.+|.+|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 36788888888888888888887777888888888888888888888888888888888776 5566678888888
Q ss_pred HHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Q 009183 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179 (541)
Q Consensus 100 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 179 (541)
|+..|+.+++++|+++|++++.++.... .....+..|..|.||||+|+..|+.+++++|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~---------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 140 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV---------------------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG---------------------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc---------------------eeecccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 8888888888888888888877654321 0223455677899999999999999999999
Q ss_pred HhcCCCCCcccCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCC----cccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183 180 LFRDASQGRQDKDGCTPLHWAALRGNVEAC----TVLVHAGTKQEL----TAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251 (541)
Q Consensus 180 l~~g~~~~~~d~~g~tpLh~A~~~g~~~~v----~~Ll~~g~~~~~----~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~ 251 (541)
+++|++++.+|..|.||||+|+..|+.+++ ++|+++|++.+. +.+|..|.|||++|++.|+.+++++|++++
T Consensus 141 l~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 141 IEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999999999999999999988 999999984321 578999999999999999999999999988
Q ss_pred hhcc
Q 009183 252 HMHR 255 (541)
Q Consensus 252 ~~~~ 255 (541)
....
T Consensus 221 ~~~~ 224 (232)
T 2rfa_A 221 KHIA 224 (232)
T ss_dssp HHC-
T ss_pred ccch
Confidence 7543
No 35
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.8e-36 Score=285.86 Aligned_cols=218 Identities=21% Similarity=0.208 Sum_probs=189.1
Q ss_pred CCCCCcchhhHHHHHHcCCHHHHHHHHHhcC---CCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183 20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDG---ASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96 (541)
Q Consensus 20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~---~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tp 96 (541)
+..+..|.||||.|+..|+.+.++.|++... .+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 3467788999999999999999988887533 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhCCCC------CCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCcHHHHHHH
Q 009183 97 LHWAAVRGSIAVADVLVQNGAR------VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN-EGRSPLHWAAY 169 (541)
Q Consensus 97 L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~L~~A~~ 169 (541)
||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|++. |++++.++. .|.||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999876 466788899999999999999999999976 899999987 89999999999
Q ss_pred hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhc
Q 009183 170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK 238 (541)
Q Consensus 170 ~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~ 238 (541)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++......+.+|.||.+.+.+.
T Consensus 161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred cCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999999766667888898887765543
No 36
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.4e-36 Score=301.69 Aligned_cols=245 Identities=19% Similarity=0.215 Sum_probs=219.7
Q ss_pred CceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC-
Q 009183 4 SEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH- 82 (541)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~- 82 (541)
+++++++.+.+...+.+..+..|.||||.|+..|+.++++.|++. +.+++ +.+|.||||+|+..|+.+++++|+++
T Consensus 31 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 31 GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHS--LWHGQKPIHLAVMANKTDLVVALVEGA 107 (364)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCC--CBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcc--ccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 567778888888888888899999999999999999999999987 55444 35899999999999999999999998
Q ss_pred ---CCCCCC-----------------CCCCCchHHHHHHHhC--CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHH
Q 009183 83 ---GGDVNA-----------------TDNNGQTALHWAAVRG--SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140 (541)
Q Consensus 83 ---g~~~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~ 140 (541)
|++++. .+..|.||||+|+..| +.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~ 187 (364)
T 3ljn_A 108 KERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187 (364)
T ss_dssp HHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred cccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence 887766 7788999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-----cccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 009183 141 FLNHIVAKYHAD-----YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215 (541)
Q Consensus 141 ~v~~Ll~~~~~~-----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 215 (541)
++++|++. +.+ ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 188 ~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 188 ALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 99999986 666 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------CcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183 216 GTKQE----------LTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252 (541)
Q Consensus 216 g~~~~----------~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~ 252 (541)
|++.+ ....+..+.||++.|+..|+.+.+..|++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~ 313 (364)
T 3ljn_A 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313 (364)
T ss_dssp SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence 86421 12256788999999999997777766665543
No 37
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.1e-34 Score=272.90 Aligned_cols=193 Identities=20% Similarity=0.243 Sum_probs=145.3
Q ss_pred CCceEEeeccccC-CCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCC-----ccCCCCCchHHHHHHHcCcHHHH
Q 009183 3 SSEIEVVSSTEAI-PNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASV-----SRPDGNGYFALQWAALNNFADIA 76 (541)
Q Consensus 3 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~iv 76 (541)
.++.++++.+.+. +.+....+..|.||||.|+..|+.++++.|++. +.++ +.+|.+|.||||+|+..|+.+++
T Consensus 13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 91 (232)
T 2rfa_A 13 ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQNVNLV 91 (232)
T ss_dssp TTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHHHHHHHcCCHHHH
Confidence 3566777777776 777777889999999999999999999999986 5554 67788999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccC
Q 009183 77 QYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156 (541)
Q Consensus 77 ~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~ 156 (541)
++|+++|++++..+..... ....+..|..|.||||+|+..|+.+++++|++. |++++.+
T Consensus 92 ~~Ll~~g~~~~~~~~~~~~--------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~ 150 (232)
T 2rfa_A 92 RALLARGASVSARATGSVF--------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQ 150 (232)
T ss_dssp HHHHHTTCCTTCCCCSGGG--------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred HHHHhCCCCCCcccCCcce--------------------eecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC
Confidence 9999999999987653110 112334455566666666666666666666654 6666666
Q ss_pred CCCCCcHHHHHHHhCcHHHH----HHHHhcCCCC------CcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183 157 DNEGRSPLHWAAYKGFADTI----RLLLFRDASQ------GRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217 (541)
Q Consensus 157 d~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~ 217 (541)
|..|.||||+|+..|+.+++ ++|+++|++. +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 151 d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 66666666666666666555 7777777776 4777788888888888888888888888875
No 38
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5.4e-34 Score=261.77 Aligned_cols=192 Identities=24% Similarity=0.260 Sum_probs=184.0
Q ss_pred CCCchHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183 58 GNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136 (541)
Q Consensus 58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~ 136 (541)
..+.||||.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 468899999999999999999998876 9999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCcccCCCCcHHHHHHHcCC-----HHHHH
Q 009183 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD-ASQGRQDKDGCTPLHWAALRGN-----VEACT 210 (541)
Q Consensus 137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~-----~~~v~ 210 (541)
|+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 99999999998878999999999999999999999999999999999 9999999999999999999998 99999
Q ss_pred HHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251 (541)
Q Consensus 211 ~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~ 251 (541)
+|+++|+ +++.+|..|.||+++|++.|+.+++++|++++
T Consensus 163 ~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGA--DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCC--CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999998 77889999999999999999999999998753
No 39
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.6e-34 Score=270.01 Aligned_cols=212 Identities=24% Similarity=0.300 Sum_probs=196.7
Q ss_pred CceEEeeccccC-CCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183 4 SEIEVVSSTEAI-PNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82 (541)
Q Consensus 4 ~~~~~~~~l~~~-~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 82 (541)
+++++++.+.+. +......+..+.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++
T Consensus 17 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 95 (231)
T 3aji_A 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95 (231)
T ss_dssp TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHc
Confidence 344555544433 334556688899999999999999999999876 899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCc
Q 009183 83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRS 162 (541)
Q Consensus 83 g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 162 (541)
|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. +.+++.+|..|.|
T Consensus 96 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t 174 (231)
T 3aji_A 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNT 174 (231)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999986 9999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183 163 PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217 (541)
Q Consensus 163 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~ 217 (541)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus 175 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 9999999999999999999999999999999999999999999999999999876
No 40
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=281.82 Aligned_cols=214 Identities=21% Similarity=0.279 Sum_probs=163.8
Q ss_pred CCceEEeeccccCCCC--------CCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHH
Q 009183 3 SSEIEVVSSTEAIPNE--------NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFAD 74 (541)
Q Consensus 3 ~~~~~~~~~l~~~~~~--------~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 74 (541)
.++.++++.|.+.... ....+..+.+||+.|+..++.+.+..++.+.|+++|.+|.+|.||||+|+..|+.+
T Consensus 21 ~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~ 100 (269)
T 4b93_B 21 DGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRAD 100 (269)
T ss_dssp TTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTT
T ss_pred cCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 3566667766654432 33456678899999999988775555555669999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcc
Q 009183 75 IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD 154 (541)
Q Consensus 75 iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~ 154 (541)
++++|+++|++++..+.+|.||+|+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++
T Consensus 101 ~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gadvn 179 (269)
T 4b93_B 101 LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH-GASIN 179 (269)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT-TCCTT
T ss_pred HHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 99999
Q ss_pred cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCC-HHHHHHHHHcCC
Q 009183 155 ASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN-VEACTVLVHAGT 217 (541)
Q Consensus 155 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~g~ 217 (541)
.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+++ .++++.|...++
T Consensus 180 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA 243 (269)
T ss_dssp CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence 999999999999999999999999999999999999999999999998775 344444444443
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=5.5e-35 Score=275.68 Aligned_cols=199 Identities=22% Similarity=0.311 Sum_probs=181.5
Q ss_pred ccCCCCCchHHHHHHHcCcHHHHHHHHhCCC----CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChH
Q 009183 54 SRPDGNGYFALQWAALNNFADIAQYIIDHGG----DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRA 129 (541)
Q Consensus 54 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~ 129 (541)
+.+|.+|.||||+|+..|+.++++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 4578899999999999999999999998765 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCC------cccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccC-CCCcHHHHHHH
Q 009183 130 VHVAAQYGQTSFLNHIVAKYHAD------YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK-DGCTPLHWAAL 202 (541)
Q Consensus 130 l~~A~~~g~~~~v~~Ll~~~~~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~tpLh~A~~ 202 (541)
||+|+..|+.+++++|++. +.+ ++..|..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc-ccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999986 433 577888999999999999999999999999999999998 89999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcc
Q 009183 203 RGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHR 255 (541)
Q Consensus 203 ~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~ 255 (541)
.|+.+++++|+++|+ +++.+|..|.||+++|+..|+.+++++|++++....
T Consensus 161 ~~~~~~v~~Ll~~ga--~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 161 LQNPDLVSLLLKCGA--DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp TTCHHHHHHHHTTTC--CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred cCCHHHHHHHHHcCC--CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 999999999999998 778899999999999999999999999999887654
No 42
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.6e-33 Score=262.57 Aligned_cols=192 Identities=23% Similarity=0.336 Sum_probs=178.7
Q ss_pred CchHHHHHHHcCcHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHhCCHHHHHHHHhCC--CCCCc-cccCCChHHHHHHH
Q 009183 60 GYFALQWAALNNFADIAQYIIDHGGDVNA-TDNNGQTALHWAAVRGSIAVADVLVQNG--ARVEA-ADVHGYRAVHVAAQ 135 (541)
Q Consensus 60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g--~~~~~-~d~~g~t~l~~A~~ 135 (541)
|.||||+|+..|+.++++.|++.++++.. .+..|.||||+|+..|+.+++++|+++| .+++. +|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 78999999999999999999999987655 7889999999999999999999999999 55555 78899999999999
Q ss_pred cCCHHHHHHHHHhcC--CCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183 136 YGQTSFLNHIVAKYH--ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213 (541)
Q Consensus 136 ~g~~~~v~~Ll~~~~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 213 (541)
.|+.+++++|++. + .+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 82 VGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999986 5 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcC-CCCCCcccCCCCCCHHHHHHhcCchHHHHHHH-Hhhhhc
Q 009183 214 HAG-TKQELTAKDKAGLTPTQLAYDKGHRQVALYLS-NAQHMH 254 (541)
Q Consensus 214 ~~g-~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~-~~~~~~ 254 (541)
++| + +++.+|..|.|||++|++.|+.+++++|+ +.+...
T Consensus 161 ~~g~~--~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~ 201 (228)
T 2dzn_A 161 GLGKS--AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201 (228)
T ss_dssp TTTCC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred hcCcc--cccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence 999 5 78889999999999999999999999999 666543
No 43
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.1e-34 Score=278.06 Aligned_cols=201 Identities=24% Similarity=0.297 Sum_probs=140.8
Q ss_pred CCCCCCCCcchhhHHHHHHcCCHHHHHHHHH---hcCCCCc----cCCCCCchHHHHHHHc---CcHHHHHHHHhCCCCC
Q 009183 17 NENQNDNQAAVTDVFSASAYGDFEKLRKFVE---EDGASVS----RPDGNGYFALQWAALN---NFADIAQYIIDHGGDV 86 (541)
Q Consensus 17 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~----~~d~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~ 86 (541)
...+..+..+.++||.|++.|+.+.++.|++ +.+.+++ ..|..|.||||+|+.. |+.+++++|+++|+++
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 3445577888999999999999999888887 3566665 4578899999999986 8999999999987652
Q ss_pred -------CC----CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCcccc--------------CCChHHHHHHHcCCHHH
Q 009183 87 -------NA----TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV--------------HGYRAVHVAAQYGQTSF 141 (541)
Q Consensus 87 -------~~----~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~--------------~g~t~l~~A~~~g~~~~ 141 (541)
+. .+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.++
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 22 456789999999999999999999999999988887 46666666666666666
Q ss_pred HHHHHHh--cCCCcccCCCCCCcHHHHHHHhCc---------HHHHHHHHhcCCCCC-------cccCCCCcHHHHHHHc
Q 009183 142 LNHIVAK--YHADYDASDNEGRSPLHWAAYKGF---------ADTIRLLLFRDASQG-------RQDKDGCTPLHWAALR 203 (541)
Q Consensus 142 v~~Ll~~--~~~~~~~~d~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~-------~~d~~g~tpLh~A~~~ 203 (541)
+++|++. .|++++.+|..|.||||+|+..|+ .+++++|+++|++++ .+|..|.||||+|+..
T Consensus 164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence 6666652 356666666666666666666555 556666666666554 2555666666666666
Q ss_pred CCHHHHHHHHHcCC
Q 009183 204 GNVEACTVLVHAGT 217 (541)
Q Consensus 204 g~~~~v~~Ll~~g~ 217 (541)
|+.+++++|+++|+
T Consensus 244 g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 244 GKIGVLAYILQREI 257 (273)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHCCC
Confidence 66666666666665
No 44
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.1e-33 Score=248.38 Aligned_cols=156 Identities=38% Similarity=0.552 Sum_probs=119.1
Q ss_pred hHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHH
Q 009183 62 FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSF 141 (541)
Q Consensus 62 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~ 141 (541)
++|+.||..|+.++|+.|+++|+++|.+|.+|.||||+|+..++.++++.|+++|++++.+|..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 35777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183 142 LNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218 (541)
Q Consensus 142 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~ 218 (541)
+++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus 86 v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 86 VKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 7777765 777777777777777777777777888888888888887777788888888888888888888888773
No 45
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.5e-34 Score=274.69 Aligned_cols=206 Identities=24% Similarity=0.260 Sum_probs=159.2
Q ss_pred chhhHHHHHHcCCHHHHHHHHH---hcCCCCcc----CCCCCchHHHHHHHc---CcHHHHHHHHhCCCCCCCC------
Q 009183 26 AVTDVFSASAYGDFEKLRKFVE---EDGASVSR----PDGNGYFALQWAALN---NFADIAQYIIDHGGDVNAT------ 89 (541)
Q Consensus 26 ~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~~----~d~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~~~~------ 89 (541)
|.++||.|++.|+.+.++.+++ +.+.+++. +|.+|.||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 6788888988888875543333 45888887 788888888888888 8888888888888776533
Q ss_pred -----CCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHH
Q 009183 90 -----DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPL 164 (541)
Q Consensus 90 -----~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 164 (541)
+..|.||||+|+..|+.+++++|+++|++++.+|..+.. ..+.+..|..|.|||
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~---------------------~~~~~~~~~~g~tpL 140 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF---------------------QKHQGTCFYFGELPL 140 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG---------------------SCCSSSCCCSCSSHH
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccc---------------------cccccccccCCCCHH
Confidence 356888888888888888888888888888887766431 123344445578888
Q ss_pred HHHHHhCcHHHHHHHHh---cCCCCCcccCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCCCC-------cccC
Q 009183 165 HWAAYKGFADTIRLLLF---RDASQGRQDKDGCTPLHWAAL--RGNVE-------ACTVLVHAGTKQEL-------TAKD 225 (541)
Q Consensus 165 ~~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~tpLh~A~~--~g~~~-------~v~~Ll~~g~~~~~-------~~~d 225 (541)
|+|+..|+.+++++|++ +|++++.+|.+|+||||+|+. .++.+ ++++|+++|+ ++ +.+|
T Consensus 141 ~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga--~~~~~~~~~~~~d 218 (256)
T 2etb_A 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA--RLCPTVQLEEISN 218 (256)
T ss_dssp HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH--HHSTTCCGGGCCC
T ss_pred HHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC--CcccccccccccC
Confidence 88888888888888888 788888888888888888887 67777 8888888887 44 6778
Q ss_pred CCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183 226 KAGLTPTQLAYDKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 226 ~~g~t~l~~A~~~~~~~i~~~L~~~~~~~ 254 (541)
..|.|||++|++.|+.+++++|++++...
T Consensus 219 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 219 HQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 88888888888888888888888877654
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1e-33 Score=270.53 Aligned_cols=170 Identities=20% Similarity=0.132 Sum_probs=138.3
Q ss_pred CchHHHHHHHcCcHH----HHHHHHhCCCCCCC----CCCCCchHHHHHHHh---CCHHHHHHHHhCCCCCCccccCCCh
Q 009183 60 GYFALQWAALNNFAD----IAQYIIDHGGDVNA----TDNNGQTALHWAAVR---GSIAVADVLVQNGARVEAADVHGYR 128 (541)
Q Consensus 60 g~t~Lh~A~~~~~~~----iv~~Ll~~g~~~~~----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t 128 (541)
|.||||.|+..|+.+ ++++|+++|++++. .+..|.||||+|+.. |+.+++++|+++|++++..+.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~---- 77 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP---- 77 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC----
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh----
Confidence 778888888888886 56677778888887 788888888888888 888888888888877654330
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCC-------------CCc
Q 009183 129 AVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD-------------GCT 195 (541)
Q Consensus 129 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-------------g~t 195 (541)
++ .......|..|.||||+|+..|+.+++++|+++|++++.+|.. |.|
T Consensus 78 ----------------~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~t 138 (256)
T 2etb_A 78 ----------------LV---NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138 (256)
T ss_dssp ----------------GG---GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSS
T ss_pred ----------------hc---ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCC
Confidence 01 1223344566778888888888888888888888888777765 999
Q ss_pred HHHHHHHcCCHHHHHHHHH---cCCCCCCcccCCCCCCHHHHHHh--cCchH-------HHHHHHHhhhhc
Q 009183 196 PLHWAALRGNVEACTVLVH---AGTKQELTAKDKAGLTPTQLAYD--KGHRQ-------VALYLSNAQHMH 254 (541)
Q Consensus 196 pLh~A~~~g~~~~v~~Ll~---~g~~~~~~~~d~~g~t~l~~A~~--~~~~~-------i~~~L~~~~~~~ 254 (541)
|||+|+..|+.+++++|++ +|+ +++.+|..|.||||+|+. .++.+ ++++|++.+...
T Consensus 139 pL~~A~~~~~~~~v~~Ll~~~~~ga--~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 139 PLSLAACTKQWDVVTYLLENPHQPA--SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp HHHHHHHTTCHHHHHHHHHCSSCCC--CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhccccCC--CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999 887 788899999999999999 78888 999999988766
No 47
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-33 Score=274.89 Aligned_cols=220 Identities=23% Similarity=0.331 Sum_probs=196.0
Q ss_pred HHHHcCCHHHHHHHHHhcCCC--------CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183 32 SASAYGDFEKLRKFVEEDGAS--------VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103 (541)
Q Consensus 32 ~A~~~g~~~~v~~ll~~~~~~--------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~ 103 (541)
.+++.+..+.++.++.+.... ....+.+|.||||.||..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 577888889999998764321 112234678999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh-c
Q 009183 104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-R 182 (541)
Q Consensus 104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ 182 (541)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |.+++..|..|.||||+|+..++.++++.++. .
T Consensus 84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~ 162 (299)
T 1s70_B 84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999987 99999999999999999999999999887764 3
Q ss_pred CCCCC--------------------------cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHH
Q 009183 183 DASQG--------------------------RQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236 (541)
Q Consensus 183 g~~~~--------------------------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~ 236 (541)
+.+++ ..+..|.||||+|+..|+.+++++|+++|+ +++.+|..|.|||++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--d~~~~d~~g~tpL~~A~ 240 (299)
T 1s70_B 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAA 240 (299)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC--CTTCCCTTCCCHHHHHH
T ss_pred CCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC--CCCCcCCCCCcHHHHHH
Confidence 44432 356779999999999999999999999998 77889999999999999
Q ss_pred hcCchHHHHHHHHhhhhc
Q 009183 237 DKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 237 ~~~~~~i~~~L~~~~~~~ 254 (541)
+.|+.+++++|++++...
T Consensus 241 ~~~~~~~v~~Ll~~gad~ 258 (299)
T 1s70_B 241 HWGKEEACRILVENLCDM 258 (299)
T ss_dssp HTTCHHHHHHHHHTTCCT
T ss_pred hcCCHHHHHHHHHcCCCC
Confidence 999999999999987654
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.5e-32 Score=244.03 Aligned_cols=160 Identities=32% Similarity=0.539 Sum_probs=149.6
Q ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183 28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA 107 (541)
Q Consensus 28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~ 107 (541)
+.|+.||+.|+.+.|+.||+. |+++|.+|.+|.||||+|+..++.+++++|+++|++++.++.+|.||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 579999999999999999976 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 009183 108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG 187 (541)
Q Consensus 108 ~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 187 (541)
++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 99999999999999999999999999999999999999986 99999999999999999999999999999999999987
Q ss_pred cc
Q 009183 188 RQ 189 (541)
Q Consensus 188 ~~ 189 (541)
..
T Consensus 164 ~~ 165 (169)
T 4gpm_A 164 HH 165 (169)
T ss_dssp --
T ss_pred CC
Confidence 53
No 49
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=258.52 Aligned_cols=214 Identities=21% Similarity=0.266 Sum_probs=195.1
Q ss_pred CCceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCc-cCCCCCchHHHHHHHcCcHHHHHHHHh
Q 009183 3 SSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVS-RPDGNGYFALQWAALNNFADIAQYIID 81 (541)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 81 (541)
.+..++++.+.+...+....+..+.++|+.|+..|+.++++.|++. +.+++ ..+..|.||||+|+..|+.+++++|++
T Consensus 19 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~ 97 (240)
T 3eu9_A 19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97 (240)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred cCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH
Confidence 3566778888887777778888999999999999999999999987 55555 445569999999999999999999999
Q ss_pred CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC-HHHHHHHHHhcCCCcccCCC-C
Q 009183 82 HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ-TSFLNHIVAKYHADYDASDN-E 159 (541)
Q Consensus 82 ~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~-~~~v~~Ll~~~~~~~~~~d~-~ 159 (541)
+|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..++ .+++++|++. +.+++..+. .
T Consensus 98 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~-~~~~~~~~~~~ 176 (240)
T 3eu9_A 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYH 176 (240)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT-TCCTTCCCTTT
T ss_pred cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc-CCCcchhhccC
Confidence 999999999999999999999999999999999999999999999999999997776 6778777765 999999987 8
Q ss_pred CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218 (541)
Q Consensus 160 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~ 218 (541)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++.
T Consensus 177 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 177 KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999873
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4.3e-33 Score=268.79 Aligned_cols=203 Identities=21% Similarity=0.243 Sum_probs=176.8
Q ss_pred CCCCccCCCCCchHHHHHHHcCcHHHHHHHHh----CCCCCC----CCCCCCchHHHHHHHh---CCHHHHHHHHhCCCC
Q 009183 50 GASVSRPDGNGYFALQWAALNNFADIAQYIID----HGGDVN----ATDNNGQTALHWAAVR---GSIAVADVLVQNGAR 118 (541)
Q Consensus 50 ~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~----~g~~~~----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~ 118 (541)
++..+..|..|.||||.|+..|+.++|+.|++ .+++++ ..+..|.||||+|+.. |+.+++++|+++|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 45567788999999999999999999888886 566665 4578899999999987 999999999999865
Q ss_pred C-------Cc----cccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCC--------------CCCcHHHHHHHhCcH
Q 009183 119 V-------EA----ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN--------------EGRSPLHWAAYKGFA 173 (541)
Q Consensus 119 ~-------~~----~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~L~~A~~~~~~ 173 (541)
+ +. +|..|.||||+|+..|+.+++++|++. |++++.++. .|.||||+|+..|+.
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 161 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence 3 22 567899999999999999999999987 999999987 799999999999999
Q ss_pred HHHHHHHh---cCCCCCcccCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCC-----cccCCCCCCHHHHHH
Q 009183 174 DTIRLLLF---RDASQGRQDKDGCTPLHWAALRGN---------VEACTVLVHAGTKQEL-----TAKDKAGLTPTQLAY 236 (541)
Q Consensus 174 ~~v~~Ll~---~g~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~g~~~~~-----~~~d~~g~t~l~~A~ 236 (541)
+++++|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++.+. +.+|..|.|||++|+
T Consensus 162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~ 241 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241 (273)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHH
Confidence 99999999 999999999999999999999988 8999999999984332 358999999999999
Q ss_pred hcCchHHHHHHHHhhhh
Q 009183 237 DKGHRQVALYLSNAQHM 253 (541)
Q Consensus 237 ~~~~~~i~~~L~~~~~~ 253 (541)
+.|+.+++++|++++..
T Consensus 242 ~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 242 SSGKIGVLAYILQREIH 258 (273)
T ss_dssp HTTCHHHHHHHHHHHTC
T ss_pred HhChHHHHHHHHHCCCC
Confidence 99999999999999874
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=8.2e-33 Score=264.75 Aligned_cols=211 Identities=21% Similarity=0.195 Sum_probs=147.4
Q ss_pred CcchhhHHHHHHcCCHHHHHHHHH---hcCCCCccCC----CCCchHHHHHH---HcCcHHHHHHHHhCCCC--------
Q 009183 24 QAAVTDVFSASAYGDFEKLRKFVE---EDGASVSRPD----GNGYFALQWAA---LNNFADIAQYIIDHGGD-------- 85 (541)
Q Consensus 24 ~~~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~~~d----~~g~t~Lh~A~---~~~~~~iv~~Ll~~g~~-------- 85 (541)
..+.++|+.|++.|+.+.++.+++ +.+.+++..+ .+|.||||+|+ ..|+.+++++|+++|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 456788999999999987766666 4577777655 67889999888 66888999999887744
Q ss_pred ---CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCc
Q 009183 86 ---VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRS 162 (541)
Q Consensus 86 ---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 162 (541)
.+..+..|.||||+|+..|+.+++++|+++|++++.++..+.. ...+.+..+..|.|
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~~g~t 142 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF--------------------QPKDEGGYFYFGEL 142 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC--------------------SSSCCCCSCCSCSS
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc--------------------CcccccccccCCCC
Confidence 3334447888888888888888888888888888877742100 01122333356677
Q ss_pred HHHHHHHhCcHHHHHHHHh---cCCCCCcccCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCC-----cccC
Q 009183 163 PLHWAAYKGFADTIRLLLF---RDASQGRQDKDGCTPLHWAALRGN---------VEACTVLVHAGTKQEL-----TAKD 225 (541)
Q Consensus 163 ~L~~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~g~~~~~-----~~~d 225 (541)
|||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..++ .+++++|+++|++.+. +.+|
T Consensus 143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d 222 (260)
T 3jxi_A 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN 222 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence 7777777777777777777 677777777777777777776665 5677777777663222 5567
Q ss_pred CCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183 226 KAGLTPTQLAYDKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 226 ~~g~t~l~~A~~~~~~~i~~~L~~~~~~~ 254 (541)
..|.|||++|++.|+.+++++|++++...
T Consensus 223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 223 NDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 77777777777777777777777766544
No 52
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2e-33 Score=278.31 Aligned_cols=231 Identities=14% Similarity=0.113 Sum_probs=133.9
Q ss_pred EEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCcc-----------------CCCCCchHHHHHHH
Q 009183 7 EVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSR-----------------PDGNGYFALQWAAL 69 (541)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-----------------~d~~g~t~Lh~A~~ 69 (541)
|+++.+.+.+.+....+..+.++++ |+.++++.|+++ |.+++. +.....+.+|+|+.
T Consensus 33 dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~ 106 (327)
T 1sw6_A 33 DLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD 106 (327)
T ss_dssp TCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHH-HHC-------------------------------CHH
T ss_pred chHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCccchhHHHHH
Confidence 4456666777777777777777755 777777777765 433332 11111223466666
Q ss_pred cCcHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC---HHHHHHH
Q 009183 70 NNFADIAQYIIDHGGDVNA-TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ---TSFLNHI 145 (541)
Q Consensus 70 ~~~~~iv~~Ll~~g~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~---~~~v~~L 145 (541)
.+..++++.|++.|++++. ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .++++.|
T Consensus 107 ~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~l 186 (327)
T 1sw6_A 107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186 (327)
T ss_dssp HHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred hhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence 6666677777777777776 66667777777777777777777777777777777777777777777666 4555555
Q ss_pred HHhcCCCcccCCCCCCcHHHHHHH----hCcHHHHHHHHhc--------------------CCCCCcccCCCCcHHHHHH
Q 009183 146 VAKYHADYDASDNEGRSPLHWAAY----KGFADTIRLLLFR--------------------DASQGRQDKDGCTPLHWAA 201 (541)
Q Consensus 146 l~~~~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~d~~g~tpLh~A~ 201 (541)
++....+++.+|..|.||||+|+. .|+.+++++|++. |++++.+|..|.||||.|+
T Consensus 187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~ 266 (327)
T 1sw6_A 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 266 (327)
T ss_dssp HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHC
T ss_pred HHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHH
Confidence 555445566667777777777776 6666777766654 5666666666666666665
Q ss_pred HcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183 202 LRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM 253 (541)
Q Consensus 202 ~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~ 253 (541)
. +++|+++ +++.+|..|.||||+|++.|+.+++++|++++..
T Consensus 267 ~------~~~Ll~~----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad 308 (327)
T 1sw6_A 267 D------LKWIIAN----MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308 (327)
T ss_dssp S------HHHHHHH----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred H------HHHHHHh----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3 5555555 2445566666666666666666666666655543
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.1e-31 Score=256.90 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=135.0
Q ss_pred CCCchHHHHHHHcCcHHH----HHHHHhCCCCCCCCC----CCCchHHHHHH---HhCCHHHHHHHHhCCCCCCccccCC
Q 009183 58 GNGYFALQWAALNNFADI----AQYIIDHGGDVNATD----NNGQTALHWAA---VRGSIAVADVLVQNGARVEAADVHG 126 (541)
Q Consensus 58 ~~g~t~Lh~A~~~~~~~i----v~~Ll~~g~~~~~~~----~~g~tpL~~A~---~~g~~~~v~~Ll~~g~~~~~~d~~g 126 (541)
..|.|+||.|+..|+.+. +++|++.|++++..+ ..|.||||+|+ +.|+.+++++|++.|+++....
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~--- 79 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR--- 79 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence 456677777777777774 344444777776554 55777777777 5677777777777765432110
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCccc--------------CC
Q 009183 127 YRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD--------------KD 192 (541)
Q Consensus 127 ~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d--------------~~ 192 (541)
.++ ....+..|..|.||||+|+..|+.+++++|+++|++++.+| ..
T Consensus 80 -----------------~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 139 (260)
T 3jxi_A 80 -----------------EFI---NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF 139 (260)
T ss_dssp -----------------HHH---TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCS
T ss_pred -----------------hhh---cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccC
Confidence 011 35566777789999999999999999999999999999988 68
Q ss_pred CCcHHHHHHHcCCHHHHHHHHH---cCCCCCCcccCCCCCCHHHHHHhcCc---------hHHHHHHHHhhhhc
Q 009183 193 GCTPLHWAALRGNVEACTVLVH---AGTKQELTAKDKAGLTPTQLAYDKGH---------RQVALYLSNAQHMH 254 (541)
Q Consensus 193 g~tpLh~A~~~g~~~~v~~Ll~---~g~~~~~~~~d~~g~t~l~~A~~~~~---------~~i~~~L~~~~~~~ 254 (541)
|.||||+|+..|+.+++++|++ +|+ +++.+|..|.||||+|++.++ .+++++|++.+...
T Consensus 140 g~tpL~~A~~~g~~~~v~~Ll~~~~~ga--~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 140 GELPLSLAACTNQPHIVHYLTENGHKQA--DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp CSSHHHHHHHTTCHHHHHHHHHCSSCCC--CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccCC--CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999 787 788899999999999998887 69999999988765
No 54
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=9.9e-31 Score=238.26 Aligned_cols=164 Identities=20% Similarity=0.289 Sum_probs=141.5
Q ss_pred CCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHH
Q 009183 52 SVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVH 131 (541)
Q Consensus 52 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~ 131 (541)
.+|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 45677888999999999999999999999888888888888899999999999999999999988888888888888888
Q ss_pred HHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHH
Q 009183 132 VAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211 (541)
Q Consensus 132 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~ 211 (541)
+|+..|+.+++++|++. +++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 107 ~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185 (192)
T ss_dssp HHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence 88888888888888876 88888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcC
Q 009183 212 LVHAG 216 (541)
Q Consensus 212 Ll~~g 216 (541)
|+++|
T Consensus 186 Ll~~~ 190 (192)
T 2rfm_A 186 FTEVR 190 (192)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88764
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=254.34 Aligned_cols=190 Identities=23% Similarity=0.309 Sum_probs=165.5
Q ss_pred CchHHHHHHHcCcHHHHHHHHhCCCC--CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCC-CCCccccCCChHHHHHH--
Q 009183 60 GYFALQWAALNNFADIAQYIIDHGGD--VNATDNNGQTALHWAAVRGSIAVADVLVQNGA-RVEAADVHGYRAVHVAA-- 134 (541)
Q Consensus 60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~l~~A~-- 134 (541)
+.+++|.|+..++.+.++.+++.+.+ +|.+|.+|.||||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 44678889999999999888877665 78888889999999999999999999999997 88889999999999998
Q ss_pred ---HcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHH
Q 009183 135 ---QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211 (541)
Q Consensus 135 ---~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~ 211 (541)
..++.++++.|++. +.+.+..|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp CCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 56778888888876 77788888889999999999999999999999999999999999999999999999999999
Q ss_pred HHH-cCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183 212 LVH-AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252 (541)
Q Consensus 212 Ll~-~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~ 252 (541)
|++ .|+ +++.+|..|.|||++|++.|+.+++++|+++..
T Consensus 235 Ll~~~ga--d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 235 LLAVPSC--DISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHTSTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHhcCCC--CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 998 787 677888999999999999999999999887653
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=6.2e-31 Score=253.86 Aligned_cols=189 Identities=22% Similarity=0.280 Sum_probs=177.0
Q ss_pred hhhHHHHHHcCCHHHHHHHHHhc-CCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCchHHHHHH---
Q 009183 27 VTDVFSASAYGDFEKLRKFVEED-GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAA--- 101 (541)
Q Consensus 27 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~g~tpL~~A~--- 101 (541)
.++++.|+..|+.+.++.+++.. ...+|.+|.+|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 45667888889999998887652 12488999999999999999999999999999998 99999999999999999
Q ss_pred --HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Q 009183 102 --VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179 (541)
Q Consensus 102 --~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 179 (541)
..++.++++.|++.|.+++..|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 67899999999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred Hh-cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183 180 LF-RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216 (541)
Q Consensus 180 l~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 216 (541)
++ .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus 236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 99 89999999999999999999999999999999876
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.4e-30 Score=231.22 Aligned_cols=168 Identities=20% Similarity=0.375 Sum_probs=83.6
Q ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183 28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA 107 (541)
Q Consensus 28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~ 107 (541)
++|+.|++.|+.+.++.+++..+..++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 83 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD 83 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence 44555555555555555554433334455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 009183 108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG 187 (541)
Q Consensus 108 ~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 187 (541)
++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 84 ~v~~Ll~~g~~~----------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 129 (172)
T 3v30_A 84 IVGLLLERDVDI----------------------------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129 (172)
T ss_dssp HHHHHHTTTCCT----------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHcCCCC----------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 555555554444 4444455555555555555555555555555555
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCH
Q 009183 188 RQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP 231 (541)
Q Consensus 188 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~ 231 (541)
.+|..|.||||+|+..|+.+++++|+++|+ ++..++..|.||
T Consensus 130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~--~~~~~~~~~~~p 171 (172)
T 3v30_A 130 TEADSGYTPMDLAVALGYRKVQQVIENHIL--KLFQSNLVPADP 171 (172)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHHH--HHSCC-------
T ss_pred ccCCCCCCHHHHHHHhCcHHHHHHHHHHHH--HHhcccCCCCCC
Confidence 555555555555555555555555555554 333444444443
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.8e-30 Score=230.79 Aligned_cols=159 Identities=21% Similarity=0.287 Sum_probs=138.0
Q ss_pred CCceEEeeccccCCCC-CCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHh
Q 009183 3 SSEIEVVSSTEAIPNE-NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIID 81 (541)
Q Consensus 3 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 81 (541)
.++.++++.+.+.... ....+..|.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..|+.+++++|++
T Consensus 12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 90 (172)
T 3v30_A 12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLE 90 (172)
T ss_dssp TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHH
Confidence 3556666666666554 566788999999999999999999999976 89999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC
Q 009183 82 HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR 161 (541)
Q Consensus 82 ~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 161 (541)
+|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.++..++..|.
T Consensus 91 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~ 169 (172)
T 3v30_A 91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPA 169 (172)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHHHSCC-----
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH-HHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 677777777776
Q ss_pred cH
Q 009183 162 SP 163 (541)
Q Consensus 162 t~ 163 (541)
||
T Consensus 170 ~p 171 (172)
T 3v30_A 170 DP 171 (172)
T ss_dssp --
T ss_pred CC
Confidence 65
No 59
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.1e-29 Score=226.33 Aligned_cols=158 Identities=33% Similarity=0.448 Sum_probs=113.4
Q ss_pred CCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcC
Q 009183 58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137 (541)
Q Consensus 58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g 137 (541)
..+.++||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 44566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183 138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216 (541)
Q Consensus 138 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 216 (541)
+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 92 ~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 92 HLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 77777777655 6667777777777777777777777777777777777777777777777777777777777777654
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=7.8e-30 Score=226.74 Aligned_cols=158 Identities=23% Similarity=0.282 Sum_probs=112.0
Q ss_pred CCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ 138 (541)
Q Consensus 59 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~ 138 (541)
.|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183 139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217 (541)
Q Consensus 139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~ 217 (541)
.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++
T Consensus 82 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 82 TDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp HHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 7777666655 66666666667777777777777777777777777777667667777777777777777777766654
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=7.5e-30 Score=225.56 Aligned_cols=157 Identities=29% Similarity=0.366 Sum_probs=122.1
Q ss_pred CCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ 138 (541)
Q Consensus 59 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~ 138 (541)
...||||.|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 45577888888888888888887777777777777788887777 77888888888777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC-CCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183 139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS-QGRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217 (541)
Q Consensus 139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~ 217 (541)
.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 83 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 83 LDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 7777777765 777777777788888888888888888888887776 47777778888888888888888888888776
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.1e-29 Score=231.24 Aligned_cols=164 Identities=26% Similarity=0.379 Sum_probs=157.7
Q ss_pred CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHH
Q 009183 86 VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLH 165 (541)
Q Consensus 86 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~ 165 (541)
++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHH
Confidence 467888999999999999999999999999999999999999999999999999999999987 8999999999999999
Q ss_pred HHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHH
Q 009183 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245 (541)
Q Consensus 166 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~ 245 (541)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|+..|+.++++
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~~v~ 184 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA--DISARDLTGLTAEASARIFGRQEVIK 184 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 77889999999999999999999999
Q ss_pred HHHHhhh
Q 009183 246 YLSNAQH 252 (541)
Q Consensus 246 ~L~~~~~ 252 (541)
+|++.++
T Consensus 185 ~Ll~~~~ 191 (192)
T 2rfm_A 185 IFTEVRR 191 (192)
T ss_dssp HHHHHHH
T ss_pred HHHhccC
Confidence 9998764
No 63
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.3e-32 Score=257.67 Aligned_cols=199 Identities=22% Similarity=0.226 Sum_probs=168.8
Q ss_pred HHHHHhcCCCCc---cCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCC
Q 009183 43 RKFVEEDGASVS---RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV 119 (541)
Q Consensus 43 ~~ll~~~~~~~~---~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 119 (541)
+.++++ +.+++ ..+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 455554 44443 44567788999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCcHHHHH--HHhCcHHHHHHHHhcCCCCCcccCCCCcH
Q 009183 120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD-NEGRSPLHWA--AYKGFADTIRLLLFRDASQGRQDKDGCTP 196 (541)
Q Consensus 120 ~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A--~~~~~~~~v~~Ll~~g~~~~~~d~~g~tp 196 (541)
+.+|..|.||||+|+..|+.+++++|++. |++++.++ ..|.||||+| +..|+.+++++|+++|++++.+|..|.||
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~ 159 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence 99999999999999999999999999976 89999886 5999999999 99999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHH
Q 009183 197 LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY 246 (541)
Q Consensus 197 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~ 246 (541)
++.++..+. .+.|++.|++.+++.+|..|.|||++|+++|+.++++.
T Consensus 160 l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 160 LWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp SSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred HHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 986655543 35778889866688899999999999999999887754
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=6.9e-29 Score=220.61 Aligned_cols=161 Identities=22% Similarity=0.314 Sum_probs=154.5
Q ss_pred CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC
Q 009183 92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG 171 (541)
Q Consensus 92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~ 171 (541)
+|.||||.|+..|+.++++.|++.|++++.+|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999987 9999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183 172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251 (541)
Q Consensus 172 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~ 251 (541)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|++.|+.+++++|.++.
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 77889999999999999999999999999987
Q ss_pred hhcc
Q 009183 252 HMHR 255 (541)
Q Consensus 252 ~~~~ 255 (541)
....
T Consensus 159 ~~~~ 162 (167)
T 3v31_A 159 LKLL 162 (167)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6543
No 65
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.8e-29 Score=225.02 Aligned_cols=167 Identities=21% Similarity=0.302 Sum_probs=118.1
Q ss_pred cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC
Q 009183 25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG 104 (541)
Q Consensus 25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g 104 (541)
.+.++|+.|++.|+.+.++.+++..+.+++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 35567777777777777777777767777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 009183 105 SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184 (541)
Q Consensus 105 ~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 184 (541)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.|||++|+..++.+++++|+++|+
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 77777777777777777777777777777777777766666654 66666666666666666666666666666666666
Q ss_pred CCCcccCC
Q 009183 185 SQGRQDKD 192 (541)
Q Consensus 185 ~~~~~d~~ 192 (541)
+++..+..
T Consensus 163 ~~~~~~~~ 170 (179)
T 3f6q_A 163 NLNRIPYK 170 (179)
T ss_dssp CCSCBCCC
T ss_pred CcccCCcc
Confidence 66655443
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.2e-28 Score=219.54 Aligned_cols=162 Identities=28% Similarity=0.484 Sum_probs=151.7
Q ss_pred CCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 009183 20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHW 99 (541)
Q Consensus 20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~ 99 (541)
......+.++|+.|++.|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 8 HHHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL 86 (169)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 34556678999999999999999999976 89999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Q 009183 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179 (541)
Q Consensus 100 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 179 (541)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ +++++.+|..|.||||+|+..|+.+++++|
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred HhcC
Q 009183 180 LFRD 183 (541)
Q Consensus 180 l~~g 183 (541)
++.|
T Consensus 166 ~~~G 169 (169)
T 2y1l_E 166 QKLN 169 (169)
T ss_dssp HTC-
T ss_pred HHcC
Confidence 9875
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=6.9e-29 Score=219.35 Aligned_cols=159 Identities=25% Similarity=0.349 Sum_probs=149.2
Q ss_pred CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183 24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103 (541)
Q Consensus 24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~ 103 (541)
+...++|+.|+..|+.+.++.|++ .+.+++.+|..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 346799999999999999999996 489999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 009183 104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD-YDASDNEGRSPLHWAAYKGFADTIRLLLFR 182 (541)
Q Consensus 104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 182 (541)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus 81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988 555 699999999999999999999999999999
Q ss_pred CCC
Q 009183 183 DAS 185 (541)
Q Consensus 183 g~~ 185 (541)
|++
T Consensus 160 GAd 162 (162)
T 1ihb_A 160 GAG 162 (162)
T ss_dssp C--
T ss_pred CCC
Confidence 985
No 68
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=1.3e-28 Score=215.40 Aligned_cols=150 Identities=25% Similarity=0.311 Sum_probs=84.7
Q ss_pred chHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHH
Q 009183 61 YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140 (541)
Q Consensus 61 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~ 140 (541)
.|+||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 355566666666666666665555544 3445556666666556666666665555555555555555555555555555
Q ss_pred HHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHH
Q 009183 141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212 (541)
Q Consensus 141 ~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~L 212 (541)
++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 82 ~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 55555543 555555555555555555555555555555555555555555555555555555555555544
No 69
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=6.6e-30 Score=252.93 Aligned_cols=202 Identities=16% Similarity=0.150 Sum_probs=166.4
Q ss_pred hhhHHHHHHcCCHHHHHHHHHhcCCCCcc-CCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCC
Q 009183 27 VTDVFSASAYGDFEKLRKFVEEDGASVSR-PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGS 105 (541)
Q Consensus 27 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~ 105 (541)
...++.|+..+..++++ ++.+.+.++|. +|.+|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+
T Consensus 98 ~~~~~~a~~~~~~~~~~-~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 98 QQQQHVSFDSLLQEVND-AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176 (327)
T ss_dssp ------CHHHHHHHHHH-HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred cchhHHHHHhhHHHHHH-HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc
Confidence 34456666666555555 45566999999 89999999999999999999999999999999999999999999999998
Q ss_pred ---HHHHHHHHhCC-CCCCccccCCChHHHHHHH----cCCHHHHHHHHHhc-------------------CCCcccCCC
Q 009183 106 ---IAVADVLVQNG-ARVEAADVHGYRAVHVAAQ----YGQTSFLNHIVAKY-------------------HADYDASDN 158 (541)
Q Consensus 106 ---~~~v~~Ll~~g-~~~~~~d~~g~t~l~~A~~----~g~~~~v~~Ll~~~-------------------~~~~~~~d~ 158 (541)
.++++.|++.+ ++++.+|..|.||||+|+. .|+.+++++|++.. +++++.+|.
T Consensus 177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 256 (327)
T 1sw6_A 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256 (327)
T ss_dssp HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence 78888888887 7899999999999999999 89999999998753 889999999
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhc
Q 009183 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK 238 (541)
Q Consensus 159 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~ 238 (541)
.|.||||.|+. +++|+++ +++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|+|||++|+++
T Consensus 257 ~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga--d~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 257 ERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA--DPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp ---CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC--CTTCCCTTSCCGGGGTCC-
T ss_pred cCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHHhc
Confidence 99999999985 8889988 689999999999999999999999999999998 7888999999999999876
Q ss_pred C
Q 009183 239 G 239 (541)
Q Consensus 239 ~ 239 (541)
|
T Consensus 327 g 327 (327)
T 1sw6_A 327 E 327 (327)
T ss_dssp -
T ss_pred C
Confidence 5
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=8.7e-29 Score=222.69 Aligned_cols=166 Identities=23% Similarity=0.291 Sum_probs=147.0
Q ss_pred CCCchHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183 58 GNGYFALQWAALNNFADIAQYIIDH-GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136 (541)
Q Consensus 58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~ 136 (541)
.++.++||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4678899999999999999999987 667888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216 (541)
Q Consensus 137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 216 (541)
|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|
T Consensus 83 ~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 83 GHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999976 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCC
Q 009183 217 TKQELTAKDK 226 (541)
Q Consensus 217 ~~~~~~~~d~ 226 (541)
+ +++..+.
T Consensus 162 ~--~~~~~~~ 169 (179)
T 3f6q_A 162 Q--NLNRIPY 169 (179)
T ss_dssp C--CCSCBCC
T ss_pred c--CcccCCc
Confidence 8 4444443
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1e-28 Score=219.11 Aligned_cols=157 Identities=27% Similarity=0.322 Sum_probs=79.0
Q ss_pred CCchHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcC
Q 009183 59 NGYFALQWAALNNFADIAQYIID-HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137 (541)
Q Consensus 59 ~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g 137 (541)
+|.|+||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence 34444444444444444444443 22233333444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183 138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217 (541)
Q Consensus 138 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~ 217 (541)
+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|+
T Consensus 87 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 87 HYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred cHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 44444444443 44455555555555555555555566666666666666666666666666544 55566666665553
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=8.3e-29 Score=219.62 Aligned_cols=161 Identities=29% Similarity=0.427 Sum_probs=132.5
Q ss_pred CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183 22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101 (541)
Q Consensus 22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~ 101 (541)
.+..+.++|+.|++.|+.+.++.+++..+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 35667888888888888888888888777788888888888888888888888888888888888888888888888888
Q ss_pred HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183 102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181 (541)
Q Consensus 102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 181 (541)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+. ++.+++++|++
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~ 161 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG 161 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence 88888888888888888888888888888888888888888888876 88888888888888888666 77888888887
Q ss_pred cCC
Q 009183 182 RDA 184 (541)
Q Consensus 182 ~g~ 184 (541)
+|+
T Consensus 162 ~gA 164 (165)
T 3twr_A 162 DAA 164 (165)
T ss_dssp C--
T ss_pred ccc
Confidence 765
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-31 Score=251.53 Aligned_cols=195 Identities=23% Similarity=0.231 Sum_probs=176.3
Q ss_pred cCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 009183 14 AIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNG 93 (541)
Q Consensus 14 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g 93 (541)
..+......+..+.++|+.|+..|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 9 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g 87 (229)
T 2vge_A 9 GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87 (229)
T ss_dssp -CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence 34444556677889999999999999999999976 88999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHH--HHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHh
Q 009183 94 QTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVA--AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170 (541)
Q Consensus 94 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~ 170 (541)
.||||+|+..|+.+++++|+++|++++.++ ..|.||||+| +..|+.+++++|++. |++++.+|..|.|+++.++..
T Consensus 88 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~ 166 (229)
T 2vge_A 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAE 166 (229)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCS
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHHHhhc
Confidence 999999999999999999999999999987 6999999999 999999999999987 889999999999999976555
Q ss_pred CcHHHHHHHHhcCCC--CCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183 171 GFADTIRLLLFRDAS--QGRQDKDGCTPLHWAALRGNVEACTVLV 213 (541)
Q Consensus 171 ~~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 213 (541)
+. .++|++.|++ ++.+|.+|+||||+|+..|+.++|+.++
T Consensus 167 ~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 167 FG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp ST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred cc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 43 3677888988 6788999999999999999999997654
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=5.4e-28 Score=211.53 Aligned_cols=151 Identities=30% Similarity=0.393 Sum_probs=145.0
Q ss_pred CchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc
Q 009183 93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF 172 (541)
Q Consensus 93 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~ 172 (541)
..||||.|+..|+.+++++|++.|++++ +|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCh
Confidence 4689999999999999999999999886 688999999999999999999999976 99999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHH
Q 009183 173 ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247 (541)
Q Consensus 173 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L 247 (541)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|++.|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA--DVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999999999999999999999999999999998 7788999999999999999999999987
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=4.4e-28 Score=212.79 Aligned_cols=151 Identities=28% Similarity=0.399 Sum_probs=80.2
Q ss_pred hhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCH
Q 009183 27 VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI 106 (541)
Q Consensus 27 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~ 106 (541)
.++|+.|++.|+.+.++.+++..+.+++..|..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 4555555555555555555555344555555555555555 555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 009183 107 AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL 180 (541)
Q Consensus 107 ~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 180 (541)
+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. .+++.+|..|.||||+|+..|+.+++++|+
T Consensus 82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 555555555555555555555555555555555555544433 444444444444444444444444444444
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=6.1e-28 Score=211.85 Aligned_cols=153 Identities=28% Similarity=0.324 Sum_probs=120.7
Q ss_pred CchHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183 60 GYFALQWAALNNFADIAQYIIDH-GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ 138 (541)
Q Consensus 60 g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~ 138 (541)
|.|+||.|+..|+.++++.|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 45788888888888888888877 33777777788888888 77788888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 009183 139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215 (541)
Q Consensus 139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 215 (541)
.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|++. ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 81 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 81 LDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8888877765 777777777788888888888888888888777 77777777788888888888888888777753
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=3.3e-29 Score=236.50 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=134.1
Q ss_pred CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183 57 DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136 (541)
Q Consensus 57 d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~ 136 (541)
+..|.||||.|+..++.+.++.|+++|++++.. ..|.||||.|+..|+.++++.|++.|++++.+|..|.||||+|+..
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 457999999999999999999999999999865 6789999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCC-cHHHHH--HHcCCHHHHHHHH
Q 009183 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGC-TPLHWA--ALRGNVEACTVLV 213 (541)
Q Consensus 137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-tpLh~A--~~~g~~~~v~~Ll 213 (541)
|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|. ||||+| +..|+.+++++|+
T Consensus 81 g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll 159 (239)
T 1ycs_B 81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159 (239)
T ss_dssp TCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence 999999999987 999999999999999999999999999999999999999998876 999999 7889999999999
Q ss_pred HcCCCCCCc-------ccCCCCCCHHHHHHhcCc
Q 009183 214 HAGTKQELT-------AKDKAGLTPTQLAYDKGH 240 (541)
Q Consensus 214 ~~g~~~~~~-------~~d~~g~t~l~~A~~~~~ 240 (541)
++|++.+.. ..|..+.++.+++.+.|.
T Consensus 160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 998743321 226778899998888775
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=2.7e-28 Score=230.20 Aligned_cols=209 Identities=20% Similarity=0.191 Sum_probs=149.3
Q ss_pred CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 009183 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAV 102 (541)
Q Consensus 23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~ 102 (541)
+..|.|||+.|++.|+.+.++.+++. |.+++. +..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhcc-CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 45689999999999999999999875 888875 4789999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC-cHHHHH--HHhCcHHHHHHH
Q 009183 103 RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR-SPLHWA--AYKGFADTIRLL 179 (541)
Q Consensus 103 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~L~~A--~~~~~~~~v~~L 179 (541)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.++..|. ||||+| +..|+.+++++|
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 999999998887 999999 888999999999
Q ss_pred HhcCCCCCcc---------cCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----CCcccCCCCCCHHHHHH
Q 009183 180 LFRDASQGRQ---------DKDGCTPLHWAALRGNVEACTVLVHAGTKQ----ELTAKDKAGLTPTQLAY 236 (541)
Q Consensus 180 l~~g~~~~~~---------d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~----~~~~~d~~g~t~l~~A~ 236 (541)
+++|++++.. |..+.+++++|...|. +++.|.+.+... .....++.|.+|..+..
T Consensus 159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226 (239)
T ss_dssp HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred HHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence 9999988765 5568899998888776 344444433210 01234555666665543
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=4.9e-29 Score=249.40 Aligned_cols=219 Identities=14% Similarity=0.060 Sum_probs=166.1
Q ss_pred CCcchhhHHHHHHcCCHHHHHHHHHhcCC--CCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCC---CCCCCCCchHH
Q 009183 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGA--SVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV---NATDNNGQTAL 97 (541)
Q Consensus 23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~---~~~~~~g~tpL 97 (541)
+.++.||||.|++.|+.++++.|++.... ..+..+..|.||||+||.+|+.++|++|+++|+++ +..+.+ .|||
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL 167 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF 167 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence 34567999999999999999999876331 22344557889999999999999999999999762 222233 8999
Q ss_pred HHHHHhCCHHHHHHHHhCCCCCCc--cccCCChHHHHHH-HcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHH
Q 009183 98 HWAAVRGSIAVADVLVQNGARVEA--ADVHGYRAVHVAA-QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD 174 (541)
Q Consensus 98 ~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~l~~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~ 174 (541)
|+|+..|+.+++++|+++|++++. +|..|.||||+|+ ..|+.+++++|++. |. .|.||||+|+..|+.+
T Consensus 168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~e 239 (376)
T 2aja_A 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGEKY 239 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTTTT
T ss_pred HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCCHH
Confidence 999999999999999999999887 8888999999999 99999999999974 32 2789999999999999
Q ss_pred HHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHH---------------------------HHHHHHHcCCCC---CCccc
Q 009183 175 TIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE---------------------------ACTVLVHAGTKQ---ELTAK 224 (541)
Q Consensus 175 ~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~---------------------------~v~~Ll~~g~~~---~~~~~ 224 (541)
++++|+++|++++..|. +++.|+..|+.+ .+++|++.+.-. +....
T Consensus 240 vv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~ 315 (376)
T 2aja_A 240 VNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315 (376)
T ss_dssp HHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred HHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCC
Confidence 99999999887765542 444455444433 444444422100 01122
Q ss_pred CCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183 225 DKAGLTPTQLAYDKGHRQVALYLSNAQHMH 254 (541)
Q Consensus 225 d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~ 254 (541)
...+.||+++|++.|+.+++++|++.+...
T Consensus 316 ~n~~~~~L~~A~~~g~~e~v~lLl~~~~v~ 345 (376)
T 2aja_A 316 PGDANELLRLALRLGNQGACALLLSIPSVL 345 (376)
T ss_dssp TTCCCHHHHHHHHHTCTTHHHHHTTSHHHH
T ss_pred CCCccHHHHHHHHcCcHHHHHHHHcChHHH
Confidence 345678999999999999999999876543
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=3.1e-26 Score=196.03 Aligned_cols=131 Identities=24% Similarity=0.307 Sum_probs=64.5
Q ss_pred CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCcH
Q 009183 85 DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE-GRSP 163 (541)
Q Consensus 85 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~ 163 (541)
+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|++. +.+++.+|.. |.||
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRP 81 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCH
Confidence 334444444444444444444444444444444444444444444444444 444444444433 4444444444 4555
Q ss_pred HHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217 (541)
Q Consensus 164 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~ 217 (541)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 555555555555555555555555555555555555555555555555555554
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=4.6e-26 Score=194.96 Aligned_cols=134 Identities=27% Similarity=0.312 Sum_probs=122.0
Q ss_pred CCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccC-CCh
Q 009183 50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYR 128 (541)
Q Consensus 50 ~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-g~t 128 (541)
+.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.+|.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 56788889999999999999999999999999999999999999999999999 9999999999999999999988 899
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 009183 129 AVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185 (541)
Q Consensus 129 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 185 (541)
|||+|+..|+.+++++|++. +++++.+|..|.||||+|+..++.+++++|+++|+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999876 889999999999999999999999999999988875
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=2.9e-26 Score=201.25 Aligned_cols=144 Identities=23% Similarity=0.215 Sum_probs=94.3
Q ss_pred ccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCh-HHHH
Q 009183 54 SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYR-AVHV 132 (541)
Q Consensus 54 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~l~~ 132 (541)
+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 344567777888888888888888888777777777777778877775 77777777777777777777777777 7777
Q ss_pred HHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHH
Q 009183 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHW 199 (541)
Q Consensus 133 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~ 199 (541)
|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||.+-
T Consensus 85 A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence 7777777777777765 77777777777777777777777777777777777777777777776653
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=7.1e-27 Score=210.89 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=122.3
Q ss_pred chhhHHHHHHcCCHHHHHHHHHhcCCCCccCC-CCCchHHHHHHHcCcH----HHHHHHHhCCCCCCCCCCCCchHHHHH
Q 009183 26 AVTDVFSASAYGDFEKLRKFVEEDGASVSRPD-GNGYFALQWAALNNFA----DIAQYIIDHGGDVNATDNNGQTALHWA 100 (541)
Q Consensus 26 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~----~iv~~Ll~~g~~~~~~~~~g~tpL~~A 100 (541)
+.++|+.|++.|+.+.++.++... ++.++ ..|.||||+|+.+|+. +++++|+++|++++.++..|.||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 457899999999999999988763 34444 6799999999999875 589999999999999999999999999
Q ss_pred HHhCC------HHHHHHHHhCCCCCCccccCCC-hHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcH
Q 009183 101 AVRGS------IAVADVLVQNGARVEAADVHGY-RAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFA 173 (541)
Q Consensus 101 ~~~g~------~~~v~~Ll~~g~~~~~~d~~g~-t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~ 173 (541)
+..|+ .+++++|+++|++++.+|..|. ||||+|+..+..+ .+..
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~-----------------------------~~~~ 133 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE-----------------------------NEMI 133 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH-----------------------------HHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh-----------------------------hhHH
Confidence 99886 5778888888888888888888 8888887744321 1223
Q ss_pred HHHHHHHh-cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183 174 DTIRLLLF-RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216 (541)
Q Consensus 174 ~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 216 (541)
+++++|++ +|++++.+|..|.||||+|+..|+.+++++|.+..
T Consensus 134 ~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp HHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 56666666 66666666666777777776666666666666554
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=7.5e-26 Score=198.56 Aligned_cols=145 Identities=23% Similarity=0.279 Sum_probs=120.8
Q ss_pred CCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCc-HHH
Q 009183 87 NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRS-PLH 165 (541)
Q Consensus 87 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~L~ 165 (541)
+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ .|+.+++++|++. |.+++.+|..|.| |||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVH 83 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHH
Confidence 455678999999999999999999999999999999999999999985 8999999999986 9999999999999 999
Q ss_pred HHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHH
Q 009183 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235 (541)
Q Consensus 166 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A 235 (541)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||.+-+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG--GTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC--CCCccCcCcCcccccC
Confidence 9999999999999999999999999999999999999999999999999998 7788999999987744
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=3.6e-26 Score=206.25 Aligned_cols=154 Identities=16% Similarity=0.078 Sum_probs=112.0
Q ss_pred chHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHHHHcCCH----HHHHHHHHhcCCCcccCCCCCCcHHHHHH
Q 009183 94 QTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQYGQT----SFLNHIVAKYHADYDASDNEGRSPLHWAA 168 (541)
Q Consensus 94 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~ 168 (541)
.++|+.|++.|+.+.++.+++.+. +.++ ..|.||||+|+..|+. +++++|+++ |++++.+|..|.||||+|+
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH
Confidence 345555555555555555555442 2233 4455555555555543 255555544 5556666666666666665
Q ss_pred HhCc------HHHHHHHHhcCCCCCcccCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCCcccCCCCCCHHHHH
Q 009183 169 YKGF------ADTIRLLLFRDASQGRQDKDGC-TPLHWAALRG-----NVEACTVLVH-AGTKQELTAKDKAGLTPTQLA 235 (541)
Q Consensus 169 ~~~~------~~~v~~Ll~~g~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~d~~g~t~l~~A 235 (541)
..++ .+++++|+++|++++.+|..|. ||||+|+..+ +.+++++|++ +|+ +++.+|..|+|||++|
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga--d~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL--QLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC--CTTCCCTTSCCHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC--CCcccCCCCCCHHHHH
Confidence 5554 5789999999999999999999 9999999844 4579999999 998 7889999999999999
Q ss_pred HhcCchHHHHHHHHhhh
Q 009183 236 YDKGHRQVALYLSNAQH 252 (541)
Q Consensus 236 ~~~~~~~i~~~L~~~~~ 252 (541)
++.|+.+++++|.+...
T Consensus 162 ~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIK 178 (186)
T ss_dssp HTTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999999988754
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=5.5e-24 Score=181.97 Aligned_cols=123 Identities=29% Similarity=0.340 Sum_probs=68.3
Q ss_pred CchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc
Q 009183 93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF 172 (541)
Q Consensus 93 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~ 172 (541)
+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+|+..|+
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~ 92 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGH 92 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCC
Confidence 44555555555555555555555555555555555555555555555555555543 45555555555555555555555
Q ss_pred HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183 173 ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216 (541)
Q Consensus 173 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 216 (541)
.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus 93 ~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 66666666666666666666666666666666666666665543
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=4e-24 Score=182.84 Aligned_cols=125 Identities=29% Similarity=0.387 Sum_probs=74.0
Q ss_pred CCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcC
Q 009183 58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137 (541)
Q Consensus 58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g 137 (541)
..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34555666666666666666666666665555555666666666666666666666666666555556666666666666
Q ss_pred CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183 138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD 183 (541)
Q Consensus 138 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 183 (541)
+.+++++|++. +++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 92 ~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 66666655554 5555555666666666666666666666665543
No 88
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=8.4e-27 Score=233.18 Aligned_cols=194 Identities=14% Similarity=0.082 Sum_probs=129.0
Q ss_pred hhHHHHHH-cCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCC---CCCCCCCchHHHHHHHh
Q 009183 28 TDVFSASA-YGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV---NATDNNGQTALHWAAVR 103 (541)
Q Consensus 28 ~~L~~A~~-~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~---~~~~~~g~tpL~~A~~~ 103 (541)
+.++.|+. .++.+.++.+++. +.++.||||+|+..|+.++|++|+++|+.. +..+..|.||||+|+..
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~--------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~ 138 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKK--------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHH--------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHc--------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence 34444444 3555555555543 234458888888888888888888777632 22334567788888888
Q ss_pred CCHHHHHHHHhCCCCC---CccccCCChHHHHHHHcCCHHHHHHHHHhcCCCccc--CCCCCCcHHHHHH-HhCcHHHHH
Q 009183 104 GSIAVADVLVQNGARV---EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA--SDNEGRSPLHWAA-YKGFADTIR 177 (541)
Q Consensus 104 g~~~~v~~Ll~~g~~~---~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~--~d~~g~t~L~~A~-~~~~~~~v~ 177 (541)
|+.+++++|+++|+++ +..+.. .||||+|+..|+.+++++|++. |.+++. .|..|.||||+|+ ..|+.++++
T Consensus 139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~ 216 (376)
T 2aja_A 139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVIN 216 (376)
T ss_dssp TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence 8888888888888652 222223 7788888888888888887765 666665 6777778888888 888888888
Q ss_pred HHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHH
Q 009183 178 LLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244 (541)
Q Consensus 178 ~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~ 244 (541)
+|++.|+ .|.||||+|+..|+.+++++|+++|+ +++.+| ++++.|+.+|+.+++
T Consensus 217 ~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga--~~~~~~----~~l~~A~~~g~~~vv 270 (376)
T 2aja_A 217 FLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVN--RLKEMH----DAFKLSNPDGVFDLV 270 (376)
T ss_dssp HHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHH--HHHHHH----TTTTTTSSSSCCCCS
T ss_pred HHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCc--cccccc----HHHHHHHHCCChhhh
Confidence 8877653 26778888888888888888887776 333333 356666666766643
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=7.1e-24 Score=178.31 Aligned_cols=124 Identities=40% Similarity=0.637 Sum_probs=60.4
Q ss_pred CchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc
Q 009183 93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF 172 (541)
Q Consensus 93 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~ 172 (541)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCh
Confidence 33444444444444444444444444444444444444444444444444444433 44444444445555555555555
Q ss_pred HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183 173 ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217 (541)
Q Consensus 173 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~ 217 (541)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 555555555555555555555555555555555555555555554
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.1e-23 Score=177.23 Aligned_cols=126 Identities=38% Similarity=0.607 Sum_probs=113.0
Q ss_pred CCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ 138 (541)
Q Consensus 59 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~ 138 (541)
+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 58899999999999999999999999988888889999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 009183 139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185 (541)
Q Consensus 139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 185 (541)
.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999988876 888888888999999999999999999999988875
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=9.6e-24 Score=190.33 Aligned_cols=140 Identities=26% Similarity=0.320 Sum_probs=99.6
Q ss_pred CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCchHHHHHH
Q 009183 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD-NNGQTALHWAA 101 (541)
Q Consensus 23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~-~~g~tpL~~A~ 101 (541)
+..+.||||.|++.|+.+.++.+++ +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3466777777777777777777776 66777777777777777777777777777777777777776 66777777777
Q ss_pred HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183 102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181 (541)
Q Consensus 102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 181 (541)
..|+.+++++|+++|++++.+|..|.||||+|++.++. ..+.++|++|+..|..+++++|.+
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence 77777777777777777777777777777777653221 234567777777777777776654
Q ss_pred c
Q 009183 182 R 182 (541)
Q Consensus 182 ~ 182 (541)
+
T Consensus 181 ~ 181 (183)
T 3deo_A 181 Q 181 (183)
T ss_dssp C
T ss_pred h
Confidence 3
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=4.9e-24 Score=182.51 Aligned_cols=125 Identities=22% Similarity=0.323 Sum_probs=72.5
Q ss_pred cCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHH
Q 009183 55 RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134 (541)
Q Consensus 55 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~ 134 (541)
.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666555555555555555
Q ss_pred HcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 009183 135 QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL 180 (541)
Q Consensus 135 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 180 (541)
..|+.+++++|++. |++++.+|..|.||||+|+..+..+++++|.
T Consensus 85 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 85 KNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp HTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred HcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence 55555555555543 5555555555555555555555444444443
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=4.8e-24 Score=182.58 Aligned_cols=125 Identities=26% Similarity=0.387 Sum_probs=62.9
Q ss_pred CCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHH
Q 009183 88 ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167 (541)
Q Consensus 88 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A 167 (541)
.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555554443 444444444445555555
Q ss_pred HHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213 (541)
Q Consensus 168 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 213 (541)
+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence 5555555555555445554444444555555544444444444433
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=1.3e-23 Score=189.47 Aligned_cols=140 Identities=25% Similarity=0.265 Sum_probs=122.5
Q ss_pred CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHHHH
Q 009183 57 DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQ 135 (541)
Q Consensus 57 d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~ 135 (541)
+.+|.||||+|+..|+.++++.|++ |++++.++..|.||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 4578899999999999999999999 99999999999999999999999999999999999999888 889999999999
Q ss_pred cCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 009183 136 YGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215 (541)
Q Consensus 136 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 215 (541)
.|+.+++++|++. |++++.+|..|.||||+|+..++. ..+.+||++|+..|+.+++++|.++
T Consensus 120 ~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 120 YVRPEVVEALVEL-GADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp TTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 9999999988876 888888999999999998875432 3467888888888888888888754
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=3.7e-23 Score=195.48 Aligned_cols=109 Identities=29% Similarity=0.350 Sum_probs=60.2
Q ss_pred cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCchHHHHHHHh
Q 009183 25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD-NNGQTALHWAAVR 103 (541)
Q Consensus 25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~-~~g~tpL~~A~~~ 103 (541)
.|.||||.|++.|+.+.++.|++ +.++|.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 44555555555555555555554 45555555555555555555555555555555555555554 4455555555555
Q ss_pred CCHHHHHHHHhCCCCCCccccCCChHHHHHHH
Q 009183 104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQ 135 (541)
Q Consensus 104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~ 135 (541)
|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEVEDERGLTALELARE 153 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 55555555555555555555555555555543
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=4.3e-23 Score=195.04 Aligned_cols=140 Identities=25% Similarity=0.263 Sum_probs=117.9
Q ss_pred CCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHHHHc
Q 009183 58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQY 136 (541)
Q Consensus 58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~~ 136 (541)
.+|.||||+|+..|+.++++.|++ |++++.++..|.||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 468899999999999999999998 88899888889999999999999999999999999998888 7788888888888
Q ss_pred CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216 (541)
Q Consensus 137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 216 (541)
|+.+++++|++. |++++.+|..|.||||+|+..++ ...+.||||+|+..|+.+++++|++++
T Consensus 122 g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 122 VRPEVVEALVEL-GADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 888888888876 88888888888888888875321 245678888888888888888888764
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=193.50 Aligned_cols=142 Identities=21% Similarity=0.230 Sum_probs=125.5
Q ss_pred CCCchHHHHHHHhCCHHHHHHHHhCCCCCCc------cccCCChHHHHHHHc---CCHHHHHHHHHhcCCCcccCCCCCC
Q 009183 91 NNGQTALHWAAVRGSIAVADVLVQNGARVEA------ADVHGYRAVHVAAQY---GQTSFLNHIVAKYHADYDASDNEGR 161 (541)
Q Consensus 91 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~------~d~~g~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~ 161 (541)
....++|+.|+..|+.+.++.|++.|++++. +|..|.||||+|+.. |+.+++++|++. |++++.+|..|.
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~ 227 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGN 227 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCC
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCC
Confidence 3456889999999999999999999999988 689999999999997 899999999987 999999999999
Q ss_pred cHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCch
Q 009183 162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR 241 (541)
Q Consensus 162 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~ 241 (541)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.|||++|++.|+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999862 588999999998874
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=197.86 Aligned_cols=140 Identities=24% Similarity=0.206 Sum_probs=125.3
Q ss_pred CchHHHHHHHcCcHHHHHHHHhCCCCCCC------CCCCCchHHHHHHHh---CCHHHHHHHHhCCCCCCccccCCChHH
Q 009183 60 GYFALQWAALNNFADIAQYIIDHGGDVNA------TDNNGQTALHWAAVR---GSIAVADVLVQNGARVEAADVHGYRAV 130 (541)
Q Consensus 60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~------~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~l 130 (541)
+.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 45789999999999999999999999998 688999999999997 899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCH
Q 009183 131 HVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206 (541)
Q Consensus 131 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~ 206 (541)
|+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999986 999999999999999999999999999999998876 578999999988864
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=5.4e-23 Score=191.52 Aligned_cols=129 Identities=23% Similarity=0.228 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC-CCCCCccccCCChHHHHHHHc
Q 009183 58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN-GARVEAADVHGYRAVHVAAQY 136 (541)
Q Consensus 58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~l~~A~~~ 136 (541)
.+|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555555555555554 555555554444444444444
Q ss_pred CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 009183 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG 187 (541)
Q Consensus 137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 187 (541)
|+.+++++|++. |++++.+|..|.||||+|+..+..++++.|++.|+..+
T Consensus 151 ~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 151 GYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp TCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred CCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 444444444443 44444444444444444444444444444444444433
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=2.5e-22 Score=168.38 Aligned_cols=107 Identities=26% Similarity=0.363 Sum_probs=42.1
Q ss_pred CchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCH
Q 009183 60 GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139 (541)
Q Consensus 60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~ 139 (541)
|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~ 86 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 86 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence 33444444444444444444444444444443444444444444444444444444444333333333333333333333
Q ss_pred HHHHHHHHhcCCCcccCCCCCCcHHHHH
Q 009183 140 SFLNHIVAKYHADYDASDNEGRSPLHWA 167 (541)
Q Consensus 140 ~~v~~Ll~~~~~~~~~~d~~g~t~L~~A 167 (541)
+++++|++. +++++.+|..|.||||+|
T Consensus 87 ~~v~~Ll~~-ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 87 SCVKLLLSK-GADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHHHHHHT-TCCTTCCCTTSCCHHHHC
T ss_pred HHHHHHHHc-CCCCCCcCCCCCCHHHHh
Confidence 333333332 333333333333333333
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=2.8e-22 Score=168.11 Aligned_cols=113 Identities=23% Similarity=0.367 Sum_probs=105.8
Q ss_pred CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 009183 23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAV 102 (541)
Q Consensus 23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~ 102 (541)
+..+.++|+.|+..|+.+.++.+++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 45678999999999999999999975 88999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183 103 RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136 (541)
Q Consensus 103 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~ 136 (541)
.|+.+++++|+++|++++.+|..|.||+|+|...
T Consensus 83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence 9999999999999999999999999999999543
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=9.1e-23 Score=189.97 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=110.4
Q ss_pred CCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHH
Q 009183 90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY 169 (541)
Q Consensus 90 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~ 169 (541)
+..|.||||+|+..|+.++++.|++.|++++.+|..|.||||+|+..|+.+++++|++..+++++.+|..|.||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999876688999999999999999999
Q ss_pred hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183 170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218 (541)
Q Consensus 170 ~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~ 218 (541)
.|+.+++++|+++|++++.+|.+|.||||+|+..|+.++++.|++.|+.
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 9999999999999999999999999999999999999999999988873
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=1.5e-20 Score=180.80 Aligned_cols=191 Identities=18% Similarity=0.177 Sum_probs=133.1
Q ss_pred CCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC-CchHHHHHHHhCCHHHHHHHHhC-CCCCCccccCCChHHHHH
Q 009183 56 PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQN-GARVEAADVHGYRAVHVA 133 (541)
Q Consensus 56 ~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~l~~A 133 (541)
.|..+.+.++.+...|+..+.+++...-......... +....+ ....-..+++... .......+....++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 4667888888888888877776654332221110111 111111 1111111222221 112222233445788888
Q ss_pred HHcCCHHHHHHHHHhcCCC------cccCCCCCCcHHHHHHHh---CcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcC
Q 009183 134 AQYGQTSFLNHIVAKYHAD------YDASDNEGRSPLHWAAYK---GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRG 204 (541)
Q Consensus 134 ~~~g~~~~v~~Ll~~~~~~------~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g 204 (541)
++.|+.+.+..+++. |.+ ++..|..|.||||+|+.. |+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 138 ~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g 216 (278)
T 1dcq_A 138 VKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 216 (278)
T ss_dssp HHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTT
T ss_pred hhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcC
Confidence 888888888888766 666 444578888999999988 7889999999999999988888999999999999
Q ss_pred CHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183 205 NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM 253 (541)
Q Consensus 205 ~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~ 253 (541)
+.+++++|+++|+ +++.+|..|.|||++|++.|+.+++++|+++++.
T Consensus 217 ~~~~v~~Ll~~ga--d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 217 NAECLKLLLRGKA--SIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCC--CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999887 6778888999999999999999999998887764
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=1.3e-20 Score=187.62 Aligned_cols=149 Identities=22% Similarity=0.234 Sum_probs=106.4
Q ss_pred CCCCCchHHHHHHHh-CCHHHHHHHHhCCCCCCccc--cCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHH
Q 009183 89 TDNNGQTALHWAAVR-GSIAVADVLVQNGARVEAAD--VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLH 165 (541)
Q Consensus 89 ~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~ 165 (541)
.+..+.|+||.|+.. |+.++++.|+++|++++.++ ..|.||||+|+..|+.+++++|++. |++++.+|..|.||||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLH 273 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence 344567888888888 88888888888888888877 7788888888888888888888876 8888888888888888
Q ss_pred HHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCCCCCCHHHHHHhc
Q 009183 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ-ELTAKDKAGLTPTQLAYDK 238 (541)
Q Consensus 166 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~-~~~~~d~~g~t~l~~A~~~ 238 (541)
+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++++... +....+..+.|+++++...
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888776421 2334556778888887654
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=5.6e-20 Score=176.86 Aligned_cols=190 Identities=17% Similarity=0.156 Sum_probs=143.8
Q ss_pred CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCc--cCCCCCchHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCchHHH
Q 009183 22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVS--RPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALH 98 (541)
Q Consensus 22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~--~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~g~tpL~ 98 (541)
-|..+.+.++.+...||.... .+++..-.... .++.. ....+ ....-..+++..... ..+.......++|+
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n-~i~e~~l~~~~~~kP~~~-s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~ 135 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFN-EIMECCLPSEDPVKPNPG-SDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLC 135 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHH-HHHTTTCCSSSCCSCCTT-CCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHH-HHHHhhCChhhcCCCCCC-CCHHH----HHHHHHHHHHHhhcccccccccchhhhhhh
Confidence 344566788888888886554 44443221111 11111 11111 111112223332221 11222223568999
Q ss_pred HHHHhCCHHHHHHHHhCCCCC------CccccCCChHHHHHHHc---CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHH
Q 009183 99 WAAVRGSIAVADVLVQNGARV------EAADVHGYRAVHVAAQY---GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY 169 (541)
Q Consensus 99 ~A~~~g~~~~v~~Ll~~g~~~------~~~d~~g~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~ 169 (541)
.|+..|+.+.++.+++.|+++ +..|..|.||||+|+.. |+.+++++|++. |++++.+|..|.||||+|+.
T Consensus 136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~ 214 (278)
T 1dcq_A 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCL 214 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHH
T ss_pred hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHH
Confidence 999999999999999999985 44588999999999999 899999999987 99999999999999999999
Q ss_pred hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183 170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218 (541)
Q Consensus 170 ~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~ 218 (541)
.|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|+.
T Consensus 215 ~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999873
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=2.5e-20 Score=194.77 Aligned_cols=141 Identities=20% Similarity=0.188 Sum_probs=77.7
Q ss_pred chHHHHHHHhCCHHHHHHHHhCCCCCCcc------ccCCChHHHHHHH---cCCHHHHHHHHHhcCCCcccCCCCCCcHH
Q 009183 94 QTALHWAAVRGSIAVADVLVQNGARVEAA------DVHGYRAVHVAAQ---YGQTSFLNHIVAKYHADYDASDNEGRSPL 164 (541)
Q Consensus 94 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~t~l~~A~~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 164 (541)
.+.||.|+..|+.++++.|++.|++++.+ |..|.||||+|+. .|+.+++++|++. |++++.+|..|.|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTTCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCCCccCCCCCcHH
Confidence 35566666666666666666666666555 5566666666644 5666666666654 666666666666666
Q ss_pred HHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHh
Q 009183 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD 237 (541)
Q Consensus 165 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~ 237 (541)
|+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|+ +.+.......++...+.+
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga--~~~~~~~h~~~~~~~~~~ 282 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA--GTFAFPLHVDYSWVISTE 282 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC--CCCCCcceeeccccCCCc
Confidence 66666666666666666666666666666666666666666666666666665 333344444444444433
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=1.9e-20 Score=186.46 Aligned_cols=126 Identities=21% Similarity=0.299 Sum_probs=88.8
Q ss_pred ccCCChHHHHHHHc-CCHHHHHHHHHhcCCCcccCC--CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHH
Q 009183 123 DVHGYRAVHVAAQY-GQTSFLNHIVAKYHADYDASD--NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHW 199 (541)
Q Consensus 123 d~~g~t~l~~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~ 199 (541)
+..+.|+||.|+.. |+.++++.|++. |++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 34455677777777 777777777754 67777666 667777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251 (541)
Q Consensus 200 A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~ 251 (541)
|+..|+.+++++|+++|+ +++.+|..|.|||++|++.|+.+++++|+..+
T Consensus 275 A~~~g~~~~v~~LL~~Ga--d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHCcC--CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 777777777777777776 55666777777777777777777777776654
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=5.3e-20 Score=192.23 Aligned_cols=137 Identities=24% Similarity=0.234 Sum_probs=117.8
Q ss_pred CCchHHHHHHHcCcHHHHHHHHhCCCCCCCC------CCCCchHHHHHHH---hCCHHHHHHHHhCCCCCCccccCCChH
Q 009183 59 NGYFALQWAALNNFADIAQYIIDHGGDVNAT------DNNGQTALHWAAV---RGSIAVADVLVQNGARVEAADVHGYRA 129 (541)
Q Consensus 59 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~------~~~g~tpL~~A~~---~g~~~~v~~Ll~~g~~~~~~d~~g~t~ 129 (541)
...+.||.|+..|+.++++.|+++|++++.. +..|.||||+|+. .|+.+++++|+++|++++.+|..|.||
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence 3457899999999999999999999999877 7889999999977 899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHH
Q 009183 130 VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL 202 (541)
Q Consensus 130 l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~ 202 (541)
||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++. ||+|.+..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHT-CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 9999999999999999986 999999999999999999999999999999999999887 57776653
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=7.5e-20 Score=144.97 Aligned_cols=89 Identities=35% Similarity=0.579 Sum_probs=55.3
Q ss_pred CchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCH
Q 009183 60 GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139 (541)
Q Consensus 60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~ 139 (541)
|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHh
Q 009183 140 SFLNHIVAK 148 (541)
Q Consensus 140 ~~v~~Ll~~ 148 (541)
+++++|++.
T Consensus 82 ~~~~~Ll~~ 90 (93)
T 1n0q_A 82 EVVKLLLEA 90 (93)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 666665543
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2.4e-19 Score=142.05 Aligned_cols=93 Identities=35% Similarity=0.549 Sum_probs=88.1
Q ss_pred cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC
Q 009183 25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG 104 (541)
Q Consensus 25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g 104 (541)
+|.||||.|+..|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 378999999999999999999875 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCC
Q 009183 105 SIAVADVLVQNGAR 118 (541)
Q Consensus 105 ~~~~v~~Ll~~g~~ 118 (541)
+.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999975
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=7.6e-20 Score=151.16 Aligned_cols=107 Identities=30% Similarity=0.411 Sum_probs=53.5
Q ss_pred CCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHH
Q 009183 56 PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQ 135 (541)
Q Consensus 56 ~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~ 135 (541)
+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555544445555555554
Q ss_pred cCCHHHHHHHHHhcCCCcccCCCCCCcH
Q 009183 136 YGQTSFLNHIVAKYHADYDASDNEGRSP 163 (541)
Q Consensus 136 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 163 (541)
.|+.+++++|+++ |++++.++..|.+|
T Consensus 85 ~~~~~~~~~Ll~~-ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 85 NGHHEIVKLLDAK-GADVNARSWGSSHH 111 (115)
T ss_dssp TTCHHHHHHHHTT-SSSHHHHSCCCC--
T ss_pred CCCHHHHHHHHHc-CCCCCcCCcccccc
Confidence 4444444444433 44444444444443
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=2.2e-19 Score=148.38 Aligned_cols=106 Identities=31% Similarity=0.484 Sum_probs=54.8
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHH
Q 009183 123 DVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL 202 (541)
Q Consensus 123 d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~ 202 (541)
|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 44444555555555555555444443 44445555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHcCCCCCCcccCCCCCCH
Q 009183 203 RGNVEACTVLVHAGTKQELTAKDKAGLTP 231 (541)
Q Consensus 203 ~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~ 231 (541)
.|+.+++++|+++|+ +++.++..|.+|
T Consensus 85 ~~~~~~~~~Ll~~ga--~~n~~~~~~~~~ 111 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGA--DVNARSWGSSHH 111 (115)
T ss_dssp TTCHHHHHHHHTTSS--SHHHHSCCCC--
T ss_pred CCCHHHHHHHHHcCC--CCCcCCcccccc
Confidence 555555555555554 444455555544
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=1.4e-17 Score=136.34 Aligned_cols=93 Identities=30% Similarity=0.372 Sum_probs=65.3
Q ss_pred CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHH
Q 009183 53 VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHV 132 (541)
Q Consensus 53 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~ 132 (541)
....|.+|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence 34456677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHH
Q 009183 133 AAQYGQTSFLNHI 145 (541)
Q Consensus 133 A~~~g~~~~v~~L 145 (541)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 7777777776654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=1.7e-16 Score=129.69 Aligned_cols=97 Identities=25% Similarity=0.392 Sum_probs=85.2
Q ss_pred CCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCc
Q 009183 15 IPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQ 94 (541)
Q Consensus 15 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~ 94 (541)
.+....+.+.++.++||.|+..|+.+.++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 13 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~ 91 (110)
T 2zgd_A 13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91 (110)
T ss_dssp ---------CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCcccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Confidence 3445556788899999999999999999999975 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCHHHHHHH
Q 009183 95 TALHWAAVRGSIAVADVL 112 (541)
Q Consensus 95 tpL~~A~~~g~~~~v~~L 112 (541)
||||+|+..|+.+++++|
T Consensus 92 tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHh
Confidence 999999999999999987
No 115
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=77.52 E-value=1.3 Score=29.34 Aligned_cols=27 Identities=22% Similarity=0.768 Sum_probs=23.0
Q ss_pred ccccccccccCCCCCcCCccchhhhhc
Q 009183 365 SQLCPTCKIIRPVRSKHCPACKCCVEQ 391 (541)
Q Consensus 365 ~~~C~~C~~~kp~Rs~HC~~C~~CV~~ 391 (541)
..+|..|...-|+|+..|+.|+..-+|
T Consensus 19 k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 19 KKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hhhhccccCcCCcccccccCCCCCCCC
Confidence 378999999999999999999865444
No 116
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.22 E-value=1.1 Score=29.40 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=23.0
Q ss_pred ccccccccccCCCCCcCCccchhhhhc
Q 009183 365 SQLCPTCKIIRPVRSKHCPACKCCVEQ 391 (541)
Q Consensus 365 ~~~C~~C~~~kp~Rs~HC~~C~~CV~~ 391 (541)
..+|+.|...-|+++..|+.|+.--+|
T Consensus 14 k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 14 KYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp EEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CccCCCCCCcCCCCceecCCCCCcccc
Confidence 378999999999999999999865443
No 117
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=64.97 E-value=2.3 Score=30.39 Aligned_cols=22 Identities=27% Similarity=0.612 Sum_probs=16.6
Q ss_pred ccccccccc--CCCCCcCCccchh
Q 009183 366 QLCPTCKII--RPVRSKHCPACKC 387 (541)
Q Consensus 366 ~~C~~C~~~--kp~Rs~HC~~C~~ 387 (541)
..|..|... --.|-|||+.||+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~ 35 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGG 35 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCC
T ss_pred CcccCCCCccCCccccccCCCCCE
Confidence 458888753 3468899999976
No 118
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.07 E-value=4 Score=30.08 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=16.8
Q ss_pred ccccccccc--CCCCCcCCccchh
Q 009183 366 QLCPTCKII--RPVRSKHCPACKC 387 (541)
Q Consensus 366 ~~C~~C~~~--kp~Rs~HC~~C~~ 387 (541)
..|..|... --.|-|||+.|++
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~ 38 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGN 38 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCC
T ss_pred CcCcCcCCccccchhhhhhcCCCc
Confidence 568888753 3578899999986
No 119
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.91 E-value=4.9 Score=35.85 Aligned_cols=30 Identities=27% Similarity=0.819 Sum_probs=20.9
Q ss_pred CCCcCCcccccccccccc--CCCCCcCCccchhh
Q 009183 357 SPIWTGNWSQLCPTCKII--RPVRSKHCPACKCC 388 (541)
Q Consensus 357 ~~~~~~~~~~~C~~C~~~--kp~Rs~HC~~C~~C 388 (541)
.+.|..+ ..|..|... --.|-|||+.||+.
T Consensus 155 ~~~W~~~--~~C~~C~~~F~~~~rrhhCr~CG~v 186 (220)
T 1dvp_A 155 APNWADG--RVCHRCRVEFTFTNRKHHCRNCGQV 186 (220)
T ss_dssp CCCCCCC--SBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred cccCCCC--CccCCCCCccCCcccccccCCcCCE
Confidence 3455433 679999743 24689999999873
No 120
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.88 E-value=4.4 Score=32.48 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=16.7
Q ss_pred ccccccccc--CCCCCcCCccchh
Q 009183 366 QLCPTCKII--RPVRSKHCPACKC 387 (541)
Q Consensus 366 ~~C~~C~~~--kp~Rs~HC~~C~~ 387 (541)
..|..|... -..|-|||+.||+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~ 93 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGN 93 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CCCcCcCCccccccccccCCCCCe
Confidence 468888753 3468899999986
No 121
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.79 E-value=4.7 Score=30.00 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=16.9
Q ss_pred ccccccccc--CCCCCcCCccchh
Q 009183 366 QLCPTCKII--RPVRSKHCPACKC 387 (541)
Q Consensus 366 ~~C~~C~~~--kp~Rs~HC~~C~~ 387 (541)
..|..|... --.|-|||+.|++
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~ 33 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGR 33 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCC
T ss_pred CCCcCcCCcccCccccccCCCCCC
Confidence 568888753 3478899999986
No 122
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=47.34 E-value=10 Score=27.78 Aligned_cols=23 Identities=30% Similarity=0.814 Sum_probs=17.3
Q ss_pred cccccccccc--CCCCCcCCccchh
Q 009183 365 SQLCPTCKII--RPVRSKHCPACKC 387 (541)
Q Consensus 365 ~~~C~~C~~~--kp~Rs~HC~~C~~ 387 (541)
...|..|... --.|-|||+.|++
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~ 45 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGY 45 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCC
T ss_pred CCCCcCcCCccccchhcccccCCCc
Confidence 4579888753 2468899999976
No 123
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.85 E-value=7.8 Score=28.31 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=16.6
Q ss_pred ccccccccc--CCCCCcCCccchh
Q 009183 366 QLCPTCKII--RPVRSKHCPACKC 387 (541)
Q Consensus 366 ~~C~~C~~~--kp~Rs~HC~~C~~ 387 (541)
..|..|... --.|-|||+.||+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~ 43 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGH 43 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCC
T ss_pred CcccCcCCcccCccccccCCCCCC
Confidence 568888753 2468899999986
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=40.57 E-value=15 Score=27.33 Aligned_cols=23 Identities=30% Similarity=0.701 Sum_probs=16.8
Q ss_pred cccccccccc--CCCCCcCCccchh
Q 009183 365 SQLCPTCKII--RPVRSKHCPACKC 387 (541)
Q Consensus 365 ~~~C~~C~~~--kp~Rs~HC~~C~~ 387 (541)
...|..|... --.|-|||+.|++
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~ 44 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGK 44 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CCcCcCCCCcccchhhCccccCCCC
Confidence 3569888743 2457899999976
No 125
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.81 E-value=12 Score=33.35 Aligned_cols=30 Identities=30% Similarity=0.781 Sum_probs=20.1
Q ss_pred CCCcCCcccccccccccc--CCCCCcCCccchhh
Q 009183 357 SPIWTGNWSQLCPTCKII--RPVRSKHCPACKCC 388 (541)
Q Consensus 357 ~~~~~~~~~~~C~~C~~~--kp~Rs~HC~~C~~C 388 (541)
.|.|..+ ..|..|... --.|-|||+.||+.
T Consensus 158 ~p~W~~~--~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 158 APDWVDA--EECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp CCCCCCC--SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred ccccccC--CCCcCcCCCCCccccccccCCCcCE
Confidence 3455433 579999742 24578999999873
No 126
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=37.35 E-value=13 Score=23.98 Aligned_cols=18 Identities=28% Similarity=0.796 Sum_probs=11.7
Q ss_pred cccccccCCCCCcCCccc
Q 009183 368 CPTCKIIRPVRSKHCPAC 385 (541)
Q Consensus 368 C~~C~~~kp~Rs~HC~~C 385 (541)
|..|...-||--.||..|
T Consensus 14 C~~C~k~N~Pl~ryC~rC 31 (53)
T 2cr8_A 14 CTECKKFNSPSKRYCFRC 31 (53)
T ss_dssp CSSSCCEECSSCCBCTTT
T ss_pred cccccccCCCccchhHHH
Confidence 666766666666666555
No 127
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=33.93 E-value=14 Score=32.98 Aligned_cols=18 Identities=17% Similarity=0.578 Sum_probs=14.8
Q ss_pred CCCCCcCCccchhhhhcc
Q 009183 375 RPVRSKHCPACKCCVEQF 392 (541)
Q Consensus 375 kp~Rs~HC~~C~~CV~~~ 392 (541)
++.|.+||..|..|+.|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 455679999999999873
No 128
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=31.46 E-value=19 Score=22.75 Aligned_cols=19 Identities=32% Similarity=0.964 Sum_probs=14.6
Q ss_pred ccccccccCCCCCcCCccc
Q 009183 367 LCPTCKIIRPVRSKHCPAC 385 (541)
Q Consensus 367 ~C~~C~~~kp~Rs~HC~~C 385 (541)
-|..|+..-||--.||..|
T Consensus 15 kC~~C~~~N~Pl~r~C~rC 33 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp ECTTTCCEECSSCSSCTTT
T ss_pred ecccccccCCCccchhhHH
Confidence 3888888888877777766
No 129
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.15 E-value=11 Score=29.82 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=16.6
Q ss_pred ccccccccc--CCCCCcCCccchh
Q 009183 366 QLCPTCKII--RPVRSKHCPACKC 387 (541)
Q Consensus 366 ~~C~~C~~~--kp~Rs~HC~~C~~ 387 (541)
..|..|... -..|-|||+.||+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred CcccCcCCccccccccccCCCCCC
Confidence 458888752 3568999999987
No 130
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.63 E-value=11 Score=27.22 Aligned_cols=19 Identities=32% Similarity=0.859 Sum_probs=8.9
Q ss_pred cccccccCCCCCcCCccchh
Q 009183 368 CPTCKIIRPVRSKHCPACKC 387 (541)
Q Consensus 368 C~~C~~~kp~Rs~HC~~C~~ 387 (541)
|..|+..-++.+ +|+.|++
T Consensus 21 C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 21 CETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp CTTTCCEEEEEE-ECSSSCS
T ss_pred CccccccCCCcc-cCcchhh
Confidence 455544444444 4444443
No 131
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=26.94 E-value=22 Score=31.12 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=14.5
Q ss_pred CCCCCcCCccchhhhhcc
Q 009183 375 RPVRSKHCPACKCCVEQF 392 (541)
Q Consensus 375 kp~Rs~HC~~C~~CV~~~ 392 (541)
.+.|.+||..|..|+.|.
T Consensus 188 ~~~~~~~CG~C~~C~~r~ 205 (219)
T 3bl5_A 188 NGIIADGCGECPACHLRS 205 (219)
T ss_dssp TSCCSSCCSCSHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHH
Confidence 455569999999999874
No 132
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=26.14 E-value=20 Score=23.11 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=11.3
Q ss_pred ccCCcCceeecccc
Q 009183 391 QFDHHCPWISNCVG 404 (541)
Q Consensus 391 ~~DHHC~wi~nCIG 404 (541)
.++|+||+++.+=.
T Consensus 6 ~~l~~CPFL~R~p~ 19 (49)
T 1h7d_A 6 MLLRSCPVLSQGPT 19 (49)
T ss_dssp CSCCSCCCCSSCSC
T ss_pred hhhccCCchhcCCH
Confidence 57899999998753
No 133
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=24.98 E-value=22 Score=28.41 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=20.6
Q ss_pred cccccccccCCCCCcCCcc--chhh
Q 009183 366 QLCPTCKIIRPVRSKHCPA--CKCC 388 (541)
Q Consensus 366 ~~C~~C~~~kp~Rs~HC~~--C~~C 388 (541)
.+|..|...-|+|+..|+. |+..
T Consensus 94 ~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 94 SVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp EEETTTCCEECTTCSSCSCTTTTSC
T ss_pred EeeccccccCCchhhccchhhCCCc
Confidence 7899999999999999994 8764
No 134
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.68 E-value=64 Score=32.59 Aligned_cols=141 Identities=15% Similarity=0.071 Sum_probs=72.5
Q ss_pred hHHHHHHcCCHHHHHHHHHh---cCCCCccCCCCCchHHHHHHHc-C-------------cHHHHHHHHhCCCCCCCCCC
Q 009183 29 DVFSASAYGDFEKLRKFVEE---DGASVSRPDGNGYFALQWAALN-N-------------FADIAQYIIDHGGDVNATDN 91 (541)
Q Consensus 29 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~Lh~A~~~-~-------------~~~iv~~Ll~~g~~~~~~~~ 91 (541)
.|-..++.|+.+....++++ .|..++.. -.+.|..|+.. + -.++.+.+.+.|..+|...
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t- 107 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT- 107 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH-
Confidence 35566788999888877753 34444322 23444444432 2 1345666667776654432
Q ss_pred CCchHHHHHHHhCCHHHHHHH----HhCCCCCCccccCCChH-HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCcH
Q 009183 92 NGQTALHWAAVRGSIAVADVL----VQNGARVEAADVHGYRA-VHVAAQYGQTSFLNHIVAK---YHADYDASDNEGRSP 163 (541)
Q Consensus 92 ~g~tpL~~A~~~g~~~~v~~L----l~~g~~~~~~d~~g~t~-l~~A~~~g~~~~v~~Ll~~---~~~~~~~~d~~g~t~ 163 (541)
-.+.+...++.|+.+-+..+ .+.|..++... +++ +.-.++.|..+-+..+++. .|..++.... .+.
T Consensus 108 -yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~L 181 (501)
T 4g26_A 108 -FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS---YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AAL 181 (501)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHH
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce---ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHH
Confidence 12445566777876554444 44566664332 333 4444667777655544432 2444433211 133
Q ss_pred HHHHHHhCcHHHHHHH
Q 009183 164 LHWAAYKGFADTIRLL 179 (541)
Q Consensus 164 L~~A~~~~~~~~v~~L 179 (541)
+...+..|+.+-+.-+
T Consensus 182 i~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 182 LKVSMDTKNADKVYKT 197 (501)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHhhCCCHHHHHHH
Confidence 4445666665444333
No 135
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=24.56 E-value=1.5e+02 Score=28.68 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=16.6
Q ss_pred HHHHHcCCHHHHHHHHHhcCC
Q 009183 31 FSASAYGDFEKLRKFVEEDGA 51 (541)
Q Consensus 31 ~~A~~~g~~~~v~~ll~~~~~ 51 (541)
+..+..|+...|+.++..+|.
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~ 47 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGD 47 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCC
T ss_pred hHHHHcCChhHHHHHHhcCCc
Confidence 455678999999999988664
No 136
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=23.39 E-value=3.3e+02 Score=22.88 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=34.4
Q ss_pred cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCC-chHHHHHHHcCcHHHHHHHHhCC
Q 009183 25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNG-YFALQWAALNNFADIAQYIIDHG 83 (541)
Q Consensus 25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g-~t~Lh~A~~~~~~~iv~~Ll~~g 83 (541)
+.++-+-.|.+.|+++....+.++-. +..- ...=..|...|+.++++.-..+-
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 44567888999999999888876521 1111 12334566778888887766653
No 137
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=23.00 E-value=13 Score=21.21 Aligned_cols=8 Identities=50% Similarity=1.153 Sum_probs=5.3
Q ss_pred cCCccchh
Q 009183 380 KHCPACKC 387 (541)
Q Consensus 380 ~HC~~C~~ 387 (541)
.||+.|.+
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 47777754
No 138
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.10 E-value=34 Score=19.99 Aligned_cols=19 Identities=32% Similarity=0.824 Sum_probs=13.3
Q ss_pred cccccccCCCCCcCCccch
Q 009183 368 CPTCKIIRPVRSKHCPACK 386 (541)
Q Consensus 368 C~~C~~~kp~Rs~HC~~C~ 386 (541)
|..|.+.-++.+.+|..|+
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 7777777777777776664
No 139
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.34 E-value=1.2e+02 Score=21.47 Aligned_cols=38 Identities=21% Similarity=0.592 Sum_probs=23.4
Q ss_pred cccccccccCCCCCcCCccchh--hhh-cc--CCcCceeecccc
Q 009183 366 QLCPTCKIIRPVRSKHCPACKC--CVE-QF--DHHCPWISNCVG 404 (541)
Q Consensus 366 ~~C~~C~~~kp~Rs~HC~~C~~--CV~-~~--DHHC~wi~nCIG 404 (541)
.-|.+|...-.+=...|+ |+. |-. |+ ||.|++--.=.|
T Consensus 26 nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 26 NRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp TBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred CcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 459999775333357888 764 322 22 899987554443
No 140
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.09 E-value=1.6e+02 Score=21.14 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhhhh
Q 009183 455 LVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANS 492 (541)
Q Consensus 455 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 492 (541)
.++..++..++++++.+|+++-+.......--++.+++
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEk 49 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666777776666666666655543
No 141
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=20.24 E-value=70 Score=19.24 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=15.4
Q ss_pred hhhHHHHHHcCCHHHHHHHHH
Q 009183 27 VTDVFSASAYGDFEKLRKFVE 47 (541)
Q Consensus 27 ~~~L~~A~~~g~~~~v~~ll~ 47 (541)
+-.+..|+..||.+.++.|-.
T Consensus 14 EQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 14 RKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 345778888899888877643
Done!