Query 009184
Match_columns 541
No_of_seqs 370 out of 2720
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 21:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 1.1E-89 2.4E-94 615.3 38.5 508 6-529 4-519 (526)
2 KOG0166 Karyopherin (importin) 100.0 5.3E-87 1.1E-91 646.9 50.6 508 9-540 5-514 (514)
3 KOG0166 Karyopherin (importin) 100.0 8.8E-43 1.9E-47 338.9 30.8 367 73-454 109-487 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2E-42 4.3E-47 311.2 21.8 365 72-452 113-495 (526)
5 PLN03200 cellulose synthase-in 100.0 9.9E-40 2.1E-44 362.1 44.8 408 72-510 188-642 (2102)
6 PLN03200 cellulose synthase-in 100.0 8.7E-38 1.9E-42 346.7 45.2 416 73-508 404-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 2.7E-28 5.8E-33 222.1 26.2 365 69-455 122-495 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.8E-28 4E-33 223.2 24.0 363 73-456 85-449 (550)
9 PF05804 KAP: Kinesin-associat 99.9 5.8E-24 1.3E-28 219.5 40.3 388 77-503 254-646 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.9E-22 4E-27 208.4 35.0 361 73-459 290-655 (708)
11 KOG0168 Putative ubiquitin fus 99.9 2.8E-20 6.1E-25 186.5 29.2 400 74-487 168-653 (1051)
12 KOG1048 Neural adherens juncti 99.8 7.3E-18 1.6E-22 170.3 27.5 370 117-509 234-687 (717)
13 PF10508 Proteasom_PSMB: Prote 99.8 3.6E-15 7.8E-20 153.2 38.5 399 76-507 41-463 (503)
14 PF10508 Proteasom_PSMB: Prote 99.8 4.8E-15 1E-19 152.3 37.4 402 76-507 6-421 (503)
15 KOG1048 Neural adherens juncti 99.8 3.2E-16 6.9E-21 158.6 25.7 361 74-453 234-684 (717)
16 KOG4500 Rho/Rac GTPase guanine 99.8 2E-16 4.3E-21 148.1 22.3 356 84-457 53-435 (604)
17 KOG2171 Karyopherin (importin) 99.7 8.9E-15 1.9E-19 153.4 34.3 360 75-457 120-508 (1075)
18 KOG2122 Beta-catenin-binding p 99.7 2.7E-15 5.9E-20 158.1 27.0 366 73-456 197-604 (2195)
19 KOG1222 Kinesin associated pro 99.7 3.2E-14 6.9E-19 135.2 28.4 377 84-499 274-656 (791)
20 KOG4199 Uncharacterized conser 99.7 4.6E-14 1E-18 128.5 26.6 309 84-410 118-444 (461)
21 KOG4199 Uncharacterized conser 99.7 1.1E-13 2.3E-18 126.1 29.0 317 115-451 103-442 (461)
22 KOG4500 Rho/Rac GTPase guanine 99.7 6.8E-14 1.5E-18 131.4 27.9 398 73-495 87-508 (604)
23 KOG2023 Nuclear transport rece 99.7 1.7E-14 3.6E-19 142.0 22.1 404 73-504 128-615 (885)
24 PRK09687 putative lyase; Provi 99.6 1.2E-13 2.6E-18 130.4 21.9 255 117-450 24-279 (280)
25 KOG1222 Kinesin associated pro 99.6 6E-12 1.3E-16 119.9 32.7 361 73-460 304-670 (791)
26 PRK09687 putative lyase; Provi 99.6 3.7E-13 7.9E-18 127.1 23.2 254 74-407 24-279 (280)
27 KOG1293 Proteins containing ar 99.6 1.4E-12 3.1E-17 129.1 27.6 364 78-455 14-535 (678)
28 KOG2122 Beta-catenin-binding p 99.6 1.6E-13 3.4E-18 145.2 20.6 269 89-360 313-604 (2195)
29 PF04826 Arm_2: Armadillo-like 99.6 8.9E-13 1.9E-17 121.5 22.6 237 241-497 10-253 (254)
30 KOG2171 Karyopherin (importin) 99.5 2.4E-11 5.1E-16 128.1 33.8 395 74-502 37-500 (1075)
31 PRK13800 putative oxidoreducta 99.5 9.6E-12 2.1E-16 137.2 30.3 276 73-450 621-896 (897)
32 PF04826 Arm_2: Armadillo-like 99.5 2.4E-12 5.2E-17 118.7 21.1 196 113-315 9-206 (254)
33 KOG2023 Nuclear transport rece 99.5 2.9E-12 6.3E-17 126.5 22.3 312 115-453 127-505 (885)
34 PTZ00429 beta-adaptin; Provisi 99.5 3.3E-10 7.1E-15 119.8 36.1 382 73-506 68-471 (746)
35 cd00020 ARM Armadillo/beta-cat 99.5 1.4E-12 3E-17 108.0 14.6 119 111-231 2-120 (120)
36 PF01602 Adaptin_N: Adaptin N 99.5 1.2E-11 2.6E-16 130.3 24.4 326 73-452 42-368 (526)
37 PF01602 Adaptin_N: Adaptin N 99.5 1.4E-11 3E-16 129.8 24.7 361 74-507 80-445 (526)
38 PRK13800 putative oxidoreducta 99.5 5.8E-11 1.3E-15 131.1 29.5 278 114-503 619-896 (897)
39 cd00020 ARM Armadillo/beta-cat 99.4 3.4E-12 7.3E-17 105.7 13.9 117 281-409 3-119 (120)
40 KOG1293 Proteins containing ar 99.4 1.6E-10 3.5E-15 114.8 27.0 366 127-507 20-534 (678)
41 PTZ00429 beta-adaptin; Provisi 99.4 1.7E-09 3.7E-14 114.4 36.5 343 74-455 33-399 (746)
42 PF01749 IBB: Importin beta bi 99.4 6.3E-14 1.4E-18 108.7 2.1 91 5-95 2-96 (97)
43 cd00256 VATPase_H VATPase_H, r 99.3 1.2E-09 2.6E-14 107.4 27.2 323 74-410 54-425 (429)
44 cd00256 VATPase_H VATPase_H, r 99.3 1.8E-09 4E-14 106.1 26.6 353 116-505 53-424 (429)
45 KOG1241 Karyopherin (importin) 99.2 8.4E-10 1.8E-14 111.2 20.7 320 73-410 125-477 (859)
46 KOG0168 Putative ubiquitin fus 99.2 9.9E-09 2.1E-13 104.7 25.4 259 118-391 169-436 (1051)
47 KOG1241 Karyopherin (importin) 99.2 6.3E-09 1.4E-13 105.1 23.4 358 80-459 97-483 (859)
48 KOG1059 Vesicle coat complex A 99.1 8.3E-08 1.8E-12 96.5 28.9 258 74-361 145-405 (877)
49 KOG0946 ER-Golgi vesicle-tethe 99.1 2E-07 4.3E-12 94.8 29.9 324 73-413 22-402 (970)
50 KOG2759 Vacuolar H+-ATPase V1 99.1 1.6E-08 3.5E-13 96.0 19.6 279 75-357 116-438 (442)
51 KOG2160 Armadillo/beta-catenin 99.1 4.3E-08 9.3E-13 92.0 22.0 187 255-454 95-283 (342)
52 KOG2759 Vacuolar H+-ATPase V1 99.0 1.1E-07 2.5E-12 90.3 23.0 322 74-410 66-438 (442)
53 COG5215 KAP95 Karyopherin (imp 99.0 6.9E-08 1.5E-12 94.6 21.6 361 73-458 129-534 (858)
54 KOG2160 Armadillo/beta-catenin 99.0 3E-08 6.4E-13 93.0 17.8 184 130-314 96-282 (342)
55 KOG0946 ER-Golgi vesicle-tethe 99.0 1.4E-06 2.9E-11 88.9 30.6 324 117-457 23-403 (970)
56 PF03224 V-ATPase_H_N: V-ATPas 99.0 2.7E-08 5.9E-13 96.6 17.2 232 246-502 58-310 (312)
57 KOG1517 Guanine nucleotide bin 98.9 7.7E-08 1.7E-12 100.4 19.8 267 87-364 450-739 (1387)
58 PF03224 V-ATPase_H_N: V-ATPas 98.9 5.8E-08 1.2E-12 94.3 17.4 227 203-443 57-304 (312)
59 KOG0213 Splicing factor 3b, su 98.9 3.2E-07 7E-12 92.5 22.7 386 74-508 717-1144(1172)
60 KOG1061 Vesicle coat complex A 98.9 5.9E-07 1.3E-11 91.8 24.8 353 73-458 49-420 (734)
61 KOG1062 Vesicle coat complex A 98.9 2.9E-06 6.3E-11 86.9 27.8 383 76-499 110-574 (866)
62 COG5215 KAP95 Karyopherin (imp 98.8 1.3E-06 2.8E-11 85.9 22.4 354 73-451 321-709 (858)
63 KOG1789 Endocytosis protein RM 98.8 1.6E-05 3.5E-10 83.5 30.9 329 88-435 1740-2141(2235)
64 KOG1061 Vesicle coat complex A 98.8 2.5E-07 5.5E-12 94.5 17.4 222 73-313 86-307 (734)
65 KOG1062 Vesicle coat complex A 98.8 3.3E-05 7.2E-10 79.4 31.1 371 19-453 20-414 (866)
66 KOG1058 Vesicle coat complex C 98.7 6.9E-06 1.5E-10 83.5 25.2 320 125-509 108-466 (948)
67 KOG1242 Protein containing ada 98.7 1.7E-05 3.7E-10 79.6 27.4 339 117-502 97-440 (569)
68 KOG0213 Splicing factor 3b, su 98.7 5.2E-06 1.1E-10 84.1 23.6 259 205-505 803-1064(1172)
69 KOG4413 26S proteasome regulat 98.7 0.00013 2.8E-09 67.5 30.6 351 75-431 84-459 (524)
70 KOG0212 Uncharacterized conser 98.7 1.4E-06 2.9E-11 85.7 18.7 321 113-456 81-409 (675)
71 KOG3678 SARM protein (with ste 98.7 1.7E-06 3.6E-11 83.2 18.0 271 109-407 173-449 (832)
72 KOG1517 Guanine nucleotide bin 98.7 1.4E-06 3.1E-11 91.2 18.4 248 73-324 472-742 (1387)
73 KOG1824 TATA-binding protein-i 98.7 1E-05 2.3E-10 84.2 24.2 351 77-453 9-402 (1233)
74 KOG1059 Vesicle coat complex A 98.6 3.5E-05 7.7E-10 78.2 26.8 255 117-412 145-403 (877)
75 COG5369 Uncharacterized conser 98.6 6.1E-07 1.3E-11 87.6 12.9 307 177-504 407-739 (743)
76 KOG2973 Uncharacterized conser 98.6 1.6E-05 3.5E-10 72.8 21.2 291 118-455 5-317 (353)
77 KOG1060 Vesicle coat complex A 98.6 3.1E-05 6.6E-10 79.4 24.6 343 75-457 37-462 (968)
78 KOG0212 Uncharacterized conser 98.6 8.2E-06 1.8E-10 80.4 19.4 317 74-413 85-409 (675)
79 KOG3678 SARM protein (with ste 98.6 1.2E-05 2.5E-10 77.5 19.8 267 73-356 180-451 (832)
80 KOG1824 TATA-binding protein-i 98.5 0.0001 2.2E-09 77.2 27.3 418 74-504 48-597 (1233)
81 KOG1242 Protein containing ada 98.5 9.8E-05 2.1E-09 74.3 25.5 344 74-455 97-446 (569)
82 COG5181 HSH155 U2 snRNP splice 98.5 4.4E-06 9.5E-11 83.0 15.7 335 74-454 605-947 (975)
83 KOG1789 Endocytosis protein RM 98.5 7.7E-05 1.7E-09 78.6 25.1 304 71-393 1769-2142(2235)
84 COG5181 HSH155 U2 snRNP splice 98.5 2.5E-05 5.4E-10 77.8 20.7 337 117-506 605-947 (975)
85 KOG1060 Vesicle coat complex A 98.5 0.00015 3.2E-09 74.5 26.5 257 123-416 150-464 (968)
86 KOG0211 Protein phosphatase 2A 98.4 7E-05 1.5E-09 79.2 23.8 256 203-499 400-657 (759)
87 PF05536 Neurochondrin: Neuroc 98.4 0.00055 1.2E-08 71.2 28.8 236 73-314 5-261 (543)
88 COG5369 Uncharacterized conser 98.4 3.3E-06 7.2E-11 82.6 11.4 281 112-408 427-739 (743)
89 KOG4413 26S proteasome regulat 98.3 0.00022 4.8E-09 66.0 21.9 300 73-389 128-460 (524)
90 KOG2973 Uncharacterized conser 98.3 0.00018 3.8E-09 66.2 20.5 270 75-357 5-314 (353)
91 TIGR02270 conserved hypothetic 98.3 0.00021 4.6E-09 71.2 22.9 241 74-410 55-296 (410)
92 KOG1077 Vesicle coat complex A 98.3 0.0017 3.6E-08 66.3 28.5 326 74-444 75-424 (938)
93 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00059 1.3E-08 67.3 24.8 317 162-505 28-363 (371)
94 KOG4646 Uncharacterized conser 98.2 2.3E-05 4.9E-10 62.8 11.5 153 328-505 17-169 (173)
95 COG1413 FOG: HEAT repeat [Ener 98.2 0.00082 1.8E-08 66.3 25.7 251 73-411 43-305 (335)
96 PF00514 Arm: Armadillo/beta-c 98.2 2.4E-06 5.3E-11 55.0 5.0 41 148-188 1-41 (41)
97 TIGR02270 conserved hypothetic 98.2 0.00055 1.2E-08 68.3 23.6 243 116-453 54-296 (410)
98 KOG1077 Vesicle coat complex A 98.1 0.0033 7.2E-08 64.2 26.9 338 118-506 76-437 (938)
99 KOG4646 Uncharacterized conser 98.1 2.6E-05 5.7E-10 62.4 9.8 115 116-233 16-130 (173)
100 PF00514 Arm: Armadillo/beta-c 98.1 4.6E-06 9.9E-11 53.6 4.7 40 317-357 2-41 (41)
101 KOG2259 Uncharacterized conser 98.1 5.4E-05 1.2E-09 76.2 14.3 221 164-411 203-440 (823)
102 KOG2259 Uncharacterized conser 98.1 0.00018 3.8E-09 72.6 17.7 272 206-499 203-486 (823)
103 KOG1991 Nuclear transport rece 98.1 0.0036 7.8E-08 66.5 27.7 360 115-503 409-797 (1010)
104 PF10165 Ric8: Guanine nucleot 98.1 0.0013 2.8E-08 66.9 23.9 256 106-362 12-342 (446)
105 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00025 5.4E-09 65.4 15.8 224 131-357 163-428 (432)
106 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00086 1.9E-08 66.1 20.9 238 242-509 24-272 (371)
107 COG5096 Vesicle coat complex, 98.0 0.004 8.7E-08 65.7 26.4 141 74-232 56-196 (757)
108 KOG1240 Protein kinase contain 98.0 0.00019 4.1E-09 77.1 16.6 268 75-357 424-725 (1431)
109 COG5240 SEC21 Vesicle coat com 98.0 0.0023 5E-08 63.8 22.6 137 206-355 269-405 (898)
110 PF05536 Neurochondrin: Neuroc 98.0 0.00085 1.8E-08 69.8 20.8 239 161-409 7-260 (543)
111 KOG2734 Uncharacterized conser 98.0 0.0031 6.7E-08 61.0 22.6 240 93-337 104-371 (536)
112 PF12460 MMS19_C: RNAPII trans 98.0 0.018 4E-07 58.4 29.3 355 76-457 2-398 (415)
113 COG1413 FOG: HEAT repeat [Ener 98.0 0.0021 4.5E-08 63.4 22.0 215 116-406 43-269 (335)
114 KOG1240 Protein kinase contain 98.0 0.00041 8.9E-09 74.7 17.3 299 117-454 423-726 (1431)
115 COG5240 SEC21 Vesicle coat com 97.9 0.012 2.6E-07 58.9 26.0 242 86-362 203-447 (898)
116 COG5231 VMA13 Vacuolar H+-ATPa 97.9 0.0021 4.4E-08 59.6 19.0 234 164-410 154-428 (432)
117 KOG0211 Protein phosphatase 2A 97.9 0.0026 5.7E-08 67.6 22.6 382 78-507 242-626 (759)
118 PF12348 CLASP_N: CLASP N term 97.9 0.00024 5.1E-09 65.9 13.5 187 253-457 17-210 (228)
119 PF12348 CLASP_N: CLASP N term 97.9 0.00016 3.6E-09 67.0 12.3 186 83-276 17-210 (228)
120 PF13646 HEAT_2: HEAT repeats; 97.9 5E-05 1.1E-09 58.5 7.0 87 118-227 1-88 (88)
121 PF13646 HEAT_2: HEAT repeats; 97.9 5.3E-05 1.2E-09 58.3 7.1 87 245-353 1-88 (88)
122 KOG0915 Uncharacterized conser 97.9 0.001 2.2E-08 73.5 18.9 177 203-397 1000-1188(1702)
123 PF13513 HEAT_EZ: HEAT-like re 97.9 2.7E-05 5.8E-10 53.9 4.7 55 342-408 1-55 (55)
124 KOG1943 Beta-tubulin folding c 97.8 0.073 1.6E-06 57.6 31.5 220 74-305 342-602 (1133)
125 KOG2062 26S proteasome regulat 97.8 0.0011 2.3E-08 68.0 16.2 238 117-413 414-656 (929)
126 KOG1943 Beta-tubulin folding c 97.7 0.013 2.7E-07 63.1 23.6 257 116-410 341-611 (1133)
127 KOG0915 Uncharacterized conser 97.7 0.048 1E-06 61.0 28.4 318 116-457 998-1348(1702)
128 PF13513 HEAT_EZ: HEAT-like re 97.7 6E-05 1.3E-09 52.1 4.4 55 299-355 1-55 (55)
129 COG5096 Vesicle coat complex, 97.6 0.14 3.1E-06 54.5 30.7 169 82-273 28-196 (757)
130 KOG2274 Predicted importin 9 [ 97.6 0.014 3E-07 61.6 21.5 303 84-412 461-782 (1005)
131 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.00048 1E-08 53.5 8.4 95 344-453 2-96 (97)
132 KOG1248 Uncharacterized conser 97.6 0.14 3E-06 56.1 29.3 185 252-458 663-861 (1176)
133 KOG4535 HEAT and armadillo rep 97.6 0.00063 1.4E-08 66.2 10.7 308 131-448 269-598 (728)
134 KOG2734 Uncharacterized conser 97.6 0.013 2.7E-07 57.0 19.2 223 71-294 123-370 (536)
135 PF12460 MMS19_C: RNAPII trans 97.5 0.076 1.6E-06 53.9 25.7 303 86-412 56-396 (415)
136 KOG1991 Nuclear transport rece 97.5 0.13 2.7E-06 55.4 27.0 383 81-498 470-883 (1010)
137 KOG2274 Predicted importin 9 [ 97.5 0.11 2.5E-06 55.0 26.3 227 169-414 460-693 (1005)
138 PF09759 Atx10homo_assoc: Spin 97.5 0.00087 1.9E-08 52.0 8.3 67 133-199 2-70 (102)
139 smart00185 ARM Armadillo/beta- 97.4 0.00041 8.9E-09 44.4 5.3 39 149-187 2-40 (41)
140 KOG1078 Vesicle coat complex C 97.4 0.0078 1.7E-07 62.5 16.4 141 242-409 390-531 (865)
141 KOG0567 HEAT repeat-containing 97.3 0.043 9.4E-07 49.9 18.4 243 85-409 17-279 (289)
142 KOG1078 Vesicle coat complex C 97.3 0.019 4E-07 59.8 18.2 284 118-452 247-531 (865)
143 KOG4535 HEAT and armadillo rep 97.3 0.021 4.6E-07 56.0 17.5 145 297-453 403-559 (728)
144 KOG1058 Vesicle coat complex C 97.3 0.032 6.9E-07 57.8 19.4 316 121-509 25-349 (948)
145 PF10165 Ric8: Guanine nucleot 97.3 0.063 1.4E-06 54.8 21.9 231 83-316 42-339 (446)
146 KOG1248 Uncharacterized conser 97.3 0.054 1.2E-06 59.2 21.4 239 121-364 658-906 (1176)
147 PF12717 Cnd1: non-SMC mitotic 97.3 0.013 2.8E-07 51.8 14.6 98 256-363 1-99 (178)
148 KOG0414 Chromosome condensatio 97.2 0.018 3.9E-07 62.6 17.7 163 224-413 899-1067(1251)
149 smart00185 ARM Armadillo/beta- 97.2 0.0008 1.7E-08 43.0 4.9 37 319-356 4-40 (41)
150 PF08569 Mo25: Mo25-like; Int 97.2 0.014 3.1E-07 56.5 15.4 202 154-357 71-283 (335)
151 PF05918 API5: Apoptosis inhib 97.2 0.071 1.5E-06 54.8 20.8 292 119-457 26-349 (556)
152 KOG4151 Myosin assembly protei 97.2 0.015 3.3E-07 60.7 16.1 222 193-432 496-720 (748)
153 PF11841 DUF3361: Domain of un 97.2 0.017 3.7E-07 48.8 13.6 131 278-420 4-141 (160)
154 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0028 6.1E-08 49.2 8.3 92 302-408 3-94 (97)
155 PF05004 IFRD: Interferon-rela 97.2 0.029 6.2E-07 54.2 17.1 192 74-271 44-256 (309)
156 COG5656 SXM1 Importin, protein 97.1 0.082 1.8E-06 54.9 20.3 280 115-413 407-714 (970)
157 KOG1967 DNA repair/transcripti 97.1 0.0061 1.3E-07 64.3 12.3 186 161-352 817-1019(1030)
158 PF12717 Cnd1: non-SMC mitotic 96.9 0.048 1E-06 48.1 14.7 92 131-233 2-94 (178)
159 PF08569 Mo25: Mo25-like; Int 96.9 0.22 4.7E-06 48.4 20.2 204 279-505 70-282 (335)
160 KOG0567 HEAT repeat-containing 96.9 0.19 4E-06 45.9 17.8 224 75-357 38-280 (289)
161 PF09759 Atx10homo_assoc: Spin 96.8 0.0079 1.7E-07 46.8 8.0 64 301-364 2-66 (102)
162 PRK14707 hypothetical protein; 96.8 1.7 3.6E-05 51.1 28.3 382 88-502 138-525 (2710)
163 PF04078 Rcd1: Cell differenti 96.8 0.082 1.8E-06 48.5 15.3 184 256-453 8-218 (262)
164 KOG2062 26S proteasome regulat 96.7 0.25 5.5E-06 51.4 19.6 169 288-503 522-691 (929)
165 PRK14707 hypothetical protein; 96.7 2 4.3E-05 50.5 29.6 402 74-506 164-571 (2710)
166 KOG3036 Protein involved in ce 96.7 0.3 6.5E-06 44.1 17.7 153 259-420 95-255 (293)
167 PF05918 API5: Apoptosis inhib 96.7 0.84 1.8E-05 47.2 23.5 179 73-272 23-207 (556)
168 KOG1020 Sister chromatid cohes 96.7 1.6 3.6E-05 49.5 32.6 146 74-233 817-962 (1692)
169 KOG1967 DNA repair/transcripti 96.6 0.02 4.3E-07 60.6 11.3 191 202-409 816-1023(1030)
170 KOG2025 Chromosome condensatio 96.6 0.19 4.1E-06 52.1 17.4 109 239-353 81-189 (892)
171 KOG1020 Sister chromatid cohes 96.5 2.1 4.7E-05 48.6 28.4 237 240-509 1118-1408(1692)
172 PF11698 V-ATPase_H_C: V-ATPas 96.5 0.0066 1.4E-07 48.5 5.7 73 327-410 43-115 (119)
173 COG5116 RPN2 26S proteasome re 96.5 0.09 1.9E-06 52.9 14.5 151 247-435 520-673 (926)
174 PF11841 DUF3361: Domain of un 96.5 0.13 2.9E-06 43.5 13.5 126 193-318 3-135 (160)
175 KOG1243 Protein kinase [Genera 96.5 0.24 5.2E-06 51.5 17.8 194 240-458 327-520 (690)
176 PF12719 Cnd3: Nuclear condens 96.4 0.016 3.4E-07 56.0 9.2 113 327-456 26-146 (298)
177 KOG0414 Chromosome condensatio 96.4 0.023 5E-07 61.8 10.9 143 286-455 920-1066(1251)
178 KOG2956 CLIP-associating prote 96.4 0.23 4.9E-06 49.1 16.6 147 202-357 330-477 (516)
179 KOG3665 ZYG-1-like serine/thre 96.4 0.37 8E-06 51.9 19.9 198 266-505 494-696 (699)
180 PF05004 IFRD: Interferon-rela 96.4 0.26 5.7E-06 47.6 17.2 192 204-411 46-258 (309)
181 KOG2032 Uncharacterized conser 96.4 0.27 5.9E-06 48.9 16.9 268 159-453 254-531 (533)
182 KOG4653 Uncharacterized conser 96.3 0.19 4.2E-06 53.2 16.4 218 212-451 737-962 (982)
183 PF11698 V-ATPase_H_C: V-ATPas 96.3 0.0086 1.9E-07 47.9 5.3 71 117-187 44-114 (119)
184 PF12719 Cnd3: Nuclear condens 96.3 0.52 1.1E-05 45.5 18.8 172 242-436 25-209 (298)
185 KOG4151 Myosin assembly protei 96.3 0.49 1.1E-05 49.9 19.2 198 240-455 501-701 (748)
186 PF13764 E3_UbLigase_R4: E3 ub 96.3 1 2.2E-05 49.0 22.1 241 242-508 116-408 (802)
187 KOG4653 Uncharacterized conser 96.3 0.14 3E-06 54.2 14.9 228 71-311 725-961 (982)
188 PF13764 E3_UbLigase_R4: E3 ub 96.2 0.6 1.3E-05 50.7 20.2 210 157-392 115-361 (802)
189 PF04078 Rcd1: Cell differenti 96.2 0.21 4.5E-06 45.9 14.4 187 86-276 8-222 (262)
190 COG5656 SXM1 Importin, protein 96.2 2 4.4E-05 45.2 25.1 300 136-459 389-717 (970)
191 PF11864 DUF3384: Domain of un 96.2 1.9 4E-05 44.6 24.8 287 87-410 4-330 (464)
192 KOG3036 Protein involved in ce 96.1 0.5 1.1E-05 42.7 15.5 145 87-233 93-249 (293)
193 KOG2956 CLIP-associating prote 96.0 0.45 9.8E-06 47.0 16.3 174 215-410 300-477 (516)
194 PF08045 CDC14: Cell division 95.8 0.68 1.5E-05 42.9 15.9 103 131-233 105-209 (257)
195 PF14668 RICTOR_V: Rapamycin-i 95.8 0.084 1.8E-06 38.3 7.8 66 345-424 4-70 (73)
196 PF07814 WAPL: Wings apart-lik 95.7 0.52 1.1E-05 46.7 16.2 275 161-456 23-358 (361)
197 PF11707 Npa1: Ribosome 60S bi 95.7 2 4.4E-05 42.0 20.0 167 329-509 58-240 (330)
198 COG5218 YCG1 Chromosome conden 95.7 0.84 1.8E-05 46.5 16.9 108 238-351 86-193 (885)
199 PF11701 UNC45-central: Myosin 95.6 0.14 3.1E-06 43.9 10.4 144 288-450 6-156 (157)
200 COG5116 RPN2 26S proteasome re 95.6 0.1 2.2E-06 52.5 10.3 151 123-297 523-674 (926)
201 PF01603 B56: Protein phosphat 95.6 1 2.2E-05 45.5 17.8 259 92-364 109-377 (409)
202 PF02985 HEAT: HEAT repeat; I 95.5 0.019 4.2E-07 34.0 3.2 29 160-188 1-29 (31)
203 PF02985 HEAT: HEAT repeat; I 95.4 0.026 5.6E-07 33.4 3.5 29 117-146 1-29 (31)
204 PF06025 DUF913: Domain of Unk 95.4 0.49 1.1E-05 47.0 14.4 144 107-251 96-252 (379)
205 PF11865 DUF3385: Domain of un 95.3 0.16 3.5E-06 43.7 9.6 147 116-271 10-156 (160)
206 PF06371 Drf_GBD: Diaphanous G 95.2 0.14 3.1E-06 45.6 9.4 111 74-187 67-186 (187)
207 PF11701 UNC45-central: Myosin 95.2 0.15 3.2E-06 43.9 8.9 146 75-228 5-156 (157)
208 PF14668 RICTOR_V: Rapamycin-i 95.0 0.1 2.2E-06 37.9 6.2 66 134-201 4-70 (73)
209 PF08045 CDC14: Cell division 95.0 0.49 1.1E-05 43.8 12.0 100 89-190 107-209 (257)
210 KOG1566 Conserved protein Mo25 94.9 2.6 5.7E-05 39.7 16.4 204 153-357 73-286 (342)
211 PF12530 DUF3730: Protein of u 94.9 3.2 6.9E-05 38.4 17.9 202 118-339 2-215 (234)
212 KOG1243 Protein kinase [Genera 94.7 1.2 2.6E-05 46.5 15.3 258 76-357 257-515 (690)
213 KOG1820 Microtubule-associated 94.7 0.85 1.8E-05 49.6 14.8 194 162-364 256-451 (815)
214 COG5098 Chromosome condensatio 94.6 0.52 1.1E-05 48.9 12.1 142 244-412 893-1039(1128)
215 PF06025 DUF913: Domain of Unk 94.6 3.3 7.1E-05 41.3 17.8 124 259-394 76-209 (379)
216 PF08506 Cse1: Cse1; InterPro 94.6 1.5 3.2E-05 43.6 15.3 139 245-405 212-370 (370)
217 KOG1525 Sister chromatid cohes 94.6 9.7 0.00021 43.8 23.0 147 285-453 259-405 (1266)
218 KOG1949 Uncharacterized conser 94.5 2.5 5.5E-05 44.2 16.6 225 205-452 178-420 (1005)
219 KOG2025 Chromosome condensatio 94.5 2.9 6.4E-05 43.8 17.1 104 285-407 85-190 (892)
220 KOG2611 Neurochondrin/leucine- 94.4 4.4 9.5E-05 40.5 17.4 190 77-270 15-223 (698)
221 COG5098 Chromosome condensatio 94.4 0.18 4E-06 52.0 8.5 132 297-455 908-1039(1128)
222 KOG1820 Microtubule-associated 94.4 1.7 3.6E-05 47.4 16.1 186 76-272 256-443 (815)
223 PF07814 WAPL: Wings apart-lik 94.3 6.1 0.00013 39.2 19.5 92 118-211 23-116 (361)
224 PF01603 B56: Protein phosphat 94.2 4 8.7E-05 41.3 17.8 254 134-411 107-371 (409)
225 PF12530 DUF3730: Protein of u 94.2 4.4 9.5E-05 37.5 16.8 204 203-439 2-218 (234)
226 PF12231 Rif1_N: Rap1-interact 94.1 6.9 0.00015 39.1 19.6 264 84-357 4-303 (372)
227 PF11707 Npa1: Ribosome 60S bi 94.0 6.6 0.00014 38.5 19.0 156 287-453 58-237 (330)
228 PLN03076 ARF guanine nucleotid 93.6 6.8 0.00015 46.9 20.2 265 170-456 1148-1492(1780)
229 KOG2933 Uncharacterized conser 93.6 1 2.2E-05 42.2 11.1 146 242-411 87-235 (334)
230 KOG2005 26S proteasome regulat 93.6 4.2 9.2E-05 42.3 16.1 320 74-451 416-741 (878)
231 PF12830 Nipped-B_C: Sister ch 93.4 2.1 4.6E-05 38.0 12.6 146 74-232 9-168 (187)
232 KOG2137 Protein kinase [Signal 93.3 1.7 3.8E-05 45.6 13.2 210 215-454 286-497 (700)
233 PF01347 Vitellogenin_N: Lipop 93.3 3.5 7.5E-05 44.5 16.6 170 203-408 397-587 (618)
234 KOG1993 Nuclear transport rece 93.2 14 0.0003 39.6 23.3 273 119-411 529-813 (978)
235 smart00638 LPD_N Lipoprotein N 93.0 4.4 9.6E-05 43.2 16.8 136 242-408 392-543 (574)
236 KOG2137 Protein kinase [Signal 92.9 3.8 8.3E-05 43.1 14.9 136 239-394 385-521 (700)
237 PF11864 DUF3384: Domain of un 92.8 14 0.00029 38.3 29.5 258 81-357 36-330 (464)
238 PF14500 MMS19_N: Dos2-interac 92.6 6.6 0.00014 36.9 15.1 218 121-357 4-237 (262)
239 KOG3665 ZYG-1-like serine/thre 92.4 2.5 5.5E-05 45.7 13.7 195 182-406 494-693 (699)
240 KOG1949 Uncharacterized conser 92.4 4.7 0.0001 42.3 14.6 230 198-450 126-367 (1005)
241 PF14500 MMS19_N: Dos2-interac 92.3 9.9 0.00021 35.8 18.9 221 163-411 3-238 (262)
242 PF13251 DUF4042: Domain of un 92.3 2.8 6.1E-05 36.8 11.5 155 301-455 2-176 (182)
243 KOG2933 Uncharacterized conser 92.2 0.69 1.5E-05 43.4 7.8 144 162-314 91-234 (334)
244 KOG2999 Regulator of Rac1, req 92.0 7.3 0.00016 39.7 15.0 165 245-422 85-254 (713)
245 PF01347 Vitellogenin_N: Lipop 91.9 9.7 0.00021 41.1 17.8 195 117-346 396-611 (618)
246 PF13251 DUF4042: Domain of un 91.8 5.4 0.00012 35.0 12.7 141 133-273 2-175 (182)
247 PF08167 RIX1: rRNA processing 91.7 1.8 3.9E-05 37.6 9.7 111 285-410 25-143 (165)
248 PF06371 Drf_GBD: Diaphanous G 91.5 1.7 3.7E-05 38.5 9.7 83 147-230 95-186 (187)
249 KOG1566 Conserved protein Mo25 91.5 13 0.00028 35.3 17.3 203 195-412 73-288 (342)
250 KOG1822 Uncharacterized conser 91.5 36 0.00078 40.4 22.0 130 161-294 878-1009(2067)
251 PF04063 DUF383: Domain of unk 91.3 0.97 2.1E-05 40.1 7.6 108 170-277 6-137 (192)
252 PF04063 DUF383: Domain of unk 91.3 2.5 5.4E-05 37.6 10.2 114 294-422 4-142 (192)
253 PF11865 DUF3385: Domain of un 91.3 1.7 3.7E-05 37.4 9.0 146 285-453 10-157 (160)
254 PLN03076 ARF guanine nucleotid 91.2 27 0.00058 42.1 21.0 263 85-357 1149-1489(1780)
255 COG5218 YCG1 Chromosome conden 91.2 21 0.00045 37.0 17.5 104 74-190 92-198 (885)
256 PF10363 DUF2435: Protein of u 91.0 1 2.2E-05 34.6 6.4 73 74-150 4-76 (92)
257 PF12231 Rif1_N: Rap1-interact 90.0 22 0.00048 35.5 20.9 267 172-454 59-353 (372)
258 KOG2611 Neurochondrin/leucine- 90.0 23 0.00051 35.7 19.5 193 162-358 14-226 (698)
259 KOG1993 Nuclear transport rece 89.8 32 0.0007 37.0 22.3 315 74-415 527-869 (978)
260 PF14225 MOR2-PAG1_C: Cell mor 89.7 18 0.00039 34.0 18.1 214 79-314 13-254 (262)
261 PF08324 PUL: PUL domain; Int 89.3 6 0.00013 37.5 11.8 146 131-278 77-237 (268)
262 KOG2032 Uncharacterized conser 88.9 28 0.00062 35.2 27.3 135 221-357 236-371 (533)
263 PF10363 DUF2435: Protein of u 88.8 2.2 4.8E-05 32.7 6.9 77 329-419 5-81 (92)
264 PF08506 Cse1: Cse1; InterPro 88.8 27 0.00058 34.8 17.3 157 281-447 206-369 (370)
265 KOG2999 Regulator of Rac1, req 88.0 35 0.00075 35.1 19.7 155 162-317 86-245 (713)
266 KOG0413 Uncharacterized conser 87.6 24 0.00051 38.9 15.3 129 173-314 945-1073(1529)
267 PF03378 CAS_CSE1: CAS/CSE pro 87.3 37 0.0008 34.7 16.7 260 131-411 44-325 (435)
268 COG5101 CRM1 Importin beta-rel 87.3 41 0.0009 35.2 16.3 58 84-146 204-261 (1053)
269 KOG1832 HIV-1 Vpr-binding prot 87.3 16 0.00034 39.7 13.8 322 85-413 365-776 (1516)
270 PF03378 CAS_CSE1: CAS/CSE pro 87.1 29 0.00063 35.4 15.5 229 171-421 42-283 (435)
271 KOG0891 DNA-dependent protein 87.0 7.4 0.00016 47.6 12.7 265 84-360 492-766 (2341)
272 COG5209 RCD1 Uncharacterized p 86.2 9 0.0002 34.4 9.7 144 260-410 117-268 (315)
273 PF06685 DUF1186: Protein of u 85.8 30 0.00064 32.2 14.2 132 282-430 70-203 (249)
274 PF12031 DUF3518: Domain of un 85.6 2.4 5.3E-05 38.4 6.2 83 88-172 139-229 (257)
275 PF04388 Hamartin: Hamartin pr 85.4 20 0.00042 38.9 14.0 157 74-252 5-161 (668)
276 COG5209 RCD1 Uncharacterized p 85.3 4.4 9.6E-05 36.2 7.5 138 301-452 116-267 (315)
277 cd03572 ENTH_epsin_related ENT 85.3 6.2 0.00013 32.0 7.8 72 382-453 39-119 (122)
278 cd03569 VHS_Hrs_Vps27p VHS dom 85.0 3.1 6.7E-05 35.0 6.3 74 73-146 41-114 (142)
279 PF14726 RTTN_N: Rotatin, an a 85.0 7.4 0.00016 30.2 7.8 70 422-503 28-97 (98)
280 PF08167 RIX1: rRNA processing 84.6 20 0.00043 31.1 11.4 112 117-234 26-146 (165)
281 PF08324 PUL: PUL domain; Int 84.4 37 0.0008 32.0 15.2 189 288-500 66-268 (268)
282 KOG1525 Sister chromatid cohes 84.1 91 0.002 36.3 24.4 73 326-411 258-330 (1266)
283 smart00638 LPD_N Lipoprotein N 84.1 63 0.0014 34.5 20.5 157 161-346 395-567 (574)
284 KOG0392 SNF2 family DNA-depend 83.9 13 0.00029 41.8 11.8 236 74-317 78-328 (1549)
285 cd03568 VHS_STAM VHS domain fa 83.6 3.9 8.5E-05 34.5 6.3 74 73-146 37-110 (144)
286 cd03569 VHS_Hrs_Vps27p VHS dom 83.5 11 0.00024 31.6 9.1 72 382-453 42-114 (142)
287 PF10521 DUF2454: Protein of u 83.2 11 0.00024 35.9 10.1 138 117-255 120-277 (282)
288 cd03561 VHS VHS domain family; 83.1 13 0.00028 30.8 9.3 74 382-455 38-114 (133)
289 cd03568 VHS_STAM VHS domain fa 82.7 12 0.00026 31.6 8.9 71 382-452 38-109 (144)
290 PF12074 DUF3554: Domain of un 82.6 12 0.00025 36.9 10.4 218 113-338 19-255 (339)
291 KOG2549 Transcription initiati 82.2 23 0.00049 36.4 11.9 143 74-229 208-368 (576)
292 KOG1848 Uncharacterized conser 81.4 65 0.0014 37.2 15.8 60 438-503 1070-1129(1610)
293 PF12031 DUF3518: Domain of un 81.1 3.7 8E-05 37.3 5.5 79 132-211 139-226 (257)
294 smart00288 VHS Domain present 80.9 5.6 0.00012 33.0 6.3 74 73-146 37-111 (133)
295 cd03567 VHS_GGA VHS domain fam 80.6 17 0.00037 30.4 9.0 72 382-453 39-116 (139)
296 KOG1988 Uncharacterized conser 80.1 63 0.0014 35.3 14.6 251 76-357 27-281 (970)
297 KOG1822 Uncharacterized conser 80.1 57 0.0012 38.9 15.3 231 118-357 878-1127(2067)
298 PF12830 Nipped-B_C: Sister ch 80.1 42 0.00092 29.7 13.1 74 117-196 9-82 (187)
299 cd03561 VHS VHS domain family; 79.7 9.1 0.0002 31.8 7.2 75 73-147 37-113 (133)
300 PF14726 RTTN_N: Rotatin, an a 79.7 20 0.00044 27.8 8.4 93 88-183 2-95 (98)
301 KOG1788 Uncharacterized conser 79.2 32 0.0007 38.3 12.3 232 72-319 465-716 (2799)
302 PF14225 MOR2-PAG1_C: Cell mor 78.9 58 0.0013 30.6 17.2 181 159-357 64-254 (262)
303 KOG1992 Nuclear export recepto 78.8 1.1E+02 0.0023 33.5 27.4 315 77-412 41-437 (960)
304 PF10521 DUF2454: Protein of u 78.7 24 0.00053 33.6 10.7 116 327-454 119-254 (282)
305 KOG4464 Signaling protein RIC- 78.5 51 0.0011 32.6 12.4 155 204-358 48-232 (532)
306 cd03567 VHS_GGA VHS domain fam 78.4 13 0.00028 31.1 7.6 74 425-508 39-118 (139)
307 PF12463 DUF3689: Protein of u 78.0 33 0.00072 32.9 11.1 137 322-458 4-178 (303)
308 smart00288 VHS Domain present 78.0 18 0.0004 29.9 8.5 72 382-453 38-111 (133)
309 smart00509 TFS2N Domain in the 77.3 9.4 0.0002 28.0 5.8 51 442-504 19-69 (75)
310 KOG0413 Uncharacterized conser 77.2 1.3E+02 0.0028 33.6 22.2 106 341-454 944-1074(1529)
311 PF11538 Snurportin1: Snurport 75.3 3 6.4E-05 26.1 2.2 38 11-49 2-39 (40)
312 PF06685 DUF1186: Protein of u 74.9 72 0.0016 29.7 15.3 93 158-255 72-166 (249)
313 PF10274 ParcG: Parkin co-regu 74.7 59 0.0013 28.5 11.5 82 241-323 36-118 (183)
314 cd03572 ENTH_epsin_related ENT 74.6 43 0.00093 27.2 9.4 74 425-508 39-121 (122)
315 KOG1848 Uncharacterized conser 74.4 1.4E+02 0.003 34.8 15.8 97 169-270 852-956 (1610)
316 KOG1924 RhoA GTPase effector D 74.2 1.4E+02 0.0029 32.5 15.1 58 300-358 207-264 (1102)
317 KOG2229 Protein required for a 74.0 40 0.00086 34.3 10.7 141 328-500 17-160 (616)
318 PF00790 VHS: VHS domain; Int 73.6 19 0.0004 30.2 7.5 72 425-506 43-118 (140)
319 KOG0891 DNA-dependent protein 73.6 2.1E+02 0.0046 35.9 18.3 255 134-412 461-721 (2341)
320 PF12726 SEN1_N: SEN1 N termin 73.5 69 0.0015 35.4 13.9 145 74-233 442-587 (727)
321 PF13001 Ecm29: Proteasome sta 73.1 36 0.00078 35.6 11.0 173 213-410 248-443 (501)
322 KOG1992 Nuclear export recepto 72.3 1.6E+02 0.0034 32.3 17.4 151 117-273 499-669 (960)
323 PF04821 TIMELESS: Timeless pr 72.2 41 0.0009 31.7 10.3 75 437-511 133-213 (266)
324 cd00183 TFIIS_I N-terminal dom 71.9 17 0.00036 26.8 6.0 35 470-504 37-71 (76)
325 KOG4464 Signaling protein RIC- 71.0 1.2E+02 0.0025 30.3 19.2 158 74-233 46-233 (532)
326 PF04388 Hamartin: Hamartin pr 70.6 80 0.0017 34.3 13.2 63 298-360 81-143 (668)
327 cd08050 TAF6 TATA Binding Prot 69.9 26 0.00057 34.5 8.7 102 75-188 180-297 (343)
328 KOG1832 HIV-1 Vpr-binding prot 69.9 39 0.00085 36.9 10.1 169 106-285 591-785 (1516)
329 cd00197 VHS_ENTH_ANTH VHS, ENT 69.3 23 0.00049 28.4 6.9 71 425-505 38-114 (115)
330 PF04869 Uso1_p115_head: Uso1 68.7 1.2E+02 0.0025 29.5 15.2 168 118-315 36-232 (312)
331 KOG0301 Phospholipase A2-activ 67.6 1.8E+02 0.0038 31.1 15.5 164 251-433 552-725 (745)
332 PF04499 SAPS: SIT4 phosphatas 67.1 49 0.0011 34.2 10.3 80 376-455 57-150 (475)
333 PF00790 VHS: VHS domain; Int 66.9 75 0.0016 26.5 10.4 74 160-233 43-120 (140)
334 cd08050 TAF6 TATA Binding Prot 66.8 56 0.0012 32.2 10.3 113 241-355 208-338 (343)
335 PF10274 ParcG: Parkin co-regu 66.4 78 0.0017 27.8 9.8 73 202-275 39-112 (183)
336 PF12783 Sec7_N: Guanine nucle 64.6 65 0.0014 27.8 9.3 110 87-200 36-158 (168)
337 PF08711 Med26: TFIIS helical 64.6 15 0.00033 24.6 4.2 35 470-504 13-48 (53)
338 PF11791 Aconitase_B_N: Aconit 64.1 50 0.0011 27.8 7.7 100 245-357 24-123 (154)
339 PF09324 DUF1981: Domain of un 63.9 13 0.00029 28.0 4.2 66 198-267 14-83 (86)
340 PF08389 Xpo1: Exportin 1-like 63.9 45 0.00097 27.8 8.1 125 218-352 4-148 (148)
341 KOG0301 Phospholipase A2-activ 63.8 2.1E+02 0.0045 30.6 18.1 160 131-295 558-726 (745)
342 PF12054 DUF3535: Domain of un 63.2 1.3E+02 0.0028 30.8 12.4 119 381-501 312-438 (441)
343 PF12726 SEN1_N: SEN1 N termin 62.8 2.5E+02 0.0054 31.1 25.4 114 382-508 442-555 (727)
344 KOG2005 26S proteasome regulat 62.5 2.2E+02 0.0048 30.4 15.1 72 117-191 49-128 (878)
345 KOG2073 SAP family cell cycle 62.2 2.6E+02 0.0056 31.1 15.0 41 395-435 336-376 (838)
346 PF08767 CRM1_C: CRM1 C termin 61.2 1.7E+02 0.0036 28.6 12.7 180 301-507 43-245 (319)
347 PF12054 DUF3535: Domain of un 60.5 1E+02 0.0022 31.6 11.1 79 87-170 101-179 (441)
348 smart00802 UME Domain in UVSB 60.3 59 0.0013 25.7 7.4 80 327-422 11-95 (107)
349 KOG2149 Uncharacterized conser 59.8 1.5E+02 0.0032 29.5 11.4 114 244-359 59-172 (393)
350 KOG3132 m3G-cap-specific nucle 59.7 6.4 0.00014 35.4 2.0 47 9-55 23-69 (325)
351 PF08389 Xpo1: Exportin 1-like 58.7 41 0.00088 28.0 6.9 49 257-309 100-148 (148)
352 PF04499 SAPS: SIT4 phosphatas 58.6 67 0.0015 33.2 9.5 83 150-232 53-149 (475)
353 PF04821 TIMELESS: Timeless pr 58.1 1.7E+02 0.0036 27.6 15.7 62 71-146 11-72 (266)
354 KOG0889 Histone acetyltransfer 57.3 5.3E+02 0.012 33.8 17.3 322 116-454 984-1347(3550)
355 PF13001 Ecm29: Proteasome sta 57.1 2.5E+02 0.0055 29.4 25.4 149 341-509 334-491 (501)
356 KOG1788 Uncharacterized conser 56.7 3.5E+02 0.0075 30.9 18.6 75 376-451 903-980 (2799)
357 PF08713 DNA_alkylation: DNA a 56.2 1.5E+02 0.0033 26.5 11.7 141 119-284 54-196 (213)
358 PF08064 UME: UME (NUC010) dom 56.2 76 0.0017 25.1 7.5 80 327-422 11-95 (107)
359 PF09758 FPL: Uncharacterised 56.1 85 0.0019 26.5 7.9 123 148-270 15-147 (149)
360 cd00197 VHS_ENTH_ANTH VHS, ENT 55.9 1E+02 0.0022 24.5 8.9 69 382-450 38-112 (115)
361 PF08713 DNA_alkylation: DNA a 55.8 1.5E+02 0.0033 26.5 10.8 140 245-421 53-194 (213)
362 KOG0803 Predicted E3 ubiquitin 53.9 4.4E+02 0.0095 31.2 17.7 257 74-337 42-330 (1312)
363 KOG0392 SNF2 family DNA-depend 53.8 2E+02 0.0043 33.3 12.2 182 216-412 143-327 (1549)
364 PF08216 CTNNBL: Catenin-beta- 53.1 15 0.00033 28.9 2.9 42 135-177 64-105 (108)
365 KOG2149 Uncharacterized conser 53.0 1.4E+02 0.0031 29.6 10.0 133 286-434 59-192 (393)
366 PF06012 DUF908: Domain of Unk 51.9 59 0.0013 31.8 7.6 59 108-166 255-323 (329)
367 KOG2213 Apoptosis inhibitor 5/ 50.5 2.7E+02 0.0058 27.7 18.9 131 173-315 38-181 (460)
368 KOG2038 CAATT-binding transcri 50.1 3.8E+02 0.0082 29.3 21.2 100 161-270 306-407 (988)
369 KOG1087 Cytosolic sorting prot 49.9 74 0.0016 32.6 7.9 100 390-509 14-115 (470)
370 PF08216 CTNNBL: Catenin-beta- 49.8 19 0.00041 28.4 3.0 42 399-442 64-105 (108)
371 PF12397 U3snoRNP10: U3 small 49.5 1.4E+02 0.003 24.1 8.4 68 160-233 7-76 (121)
372 PF06012 DUF908: Domain of Unk 48.8 1.1E+02 0.0023 30.1 8.8 77 132-209 237-324 (329)
373 PLN03205 ATR interacting prote 48.4 2.9E+02 0.0063 27.5 12.7 171 241-413 321-519 (652)
374 PF09324 DUF1981: Domain of un 47.3 1E+02 0.0022 23.2 6.6 67 421-502 14-84 (86)
375 KOG2152 Sister chromatid cohes 46.2 4.2E+02 0.0092 28.8 19.4 42 189-230 363-404 (865)
376 KOG2199 Signal transducing ada 46.2 51 0.0011 32.3 5.8 77 424-510 45-122 (462)
377 COG5110 RPN1 26S proteasome re 46.0 3.7E+02 0.0081 28.1 18.5 94 301-418 620-713 (881)
378 PF11791 Aconitase_B_N: Aconit 45.9 63 0.0014 27.2 5.6 29 383-411 96-124 (154)
379 KOG2676 Uncharacterized conser 45.4 31 0.00068 33.3 4.2 63 137-199 376-440 (478)
380 KOG2085 Serine/threonine prote 45.1 3.3E+02 0.0072 27.3 13.4 187 109-310 170-366 (457)
381 PF04064 DUF384: Domain of unk 44.5 1E+02 0.0022 21.3 5.5 43 469-511 11-54 (58)
382 KOG2199 Signal transducing ada 44.0 1.3E+02 0.0027 29.8 8.0 73 381-453 45-118 (462)
383 KOG1791 Uncharacterized conser 43.4 2.5E+02 0.0053 33.3 11.2 200 109-340 1431-1641(1758)
384 KOG4524 Uncharacterized conser 43.0 63 0.0014 35.7 6.5 96 241-338 801-900 (1014)
385 KOG2085 Serine/threonine prote 42.4 98 0.0021 30.8 7.1 84 149-233 167-250 (457)
386 PF12397 U3snoRNP10: U3 small 42.1 1.8E+02 0.0039 23.4 8.8 66 286-357 7-74 (121)
387 cd03565 VHS_Tom1 VHS domain fa 40.2 2.2E+02 0.0048 23.8 9.8 72 382-453 39-115 (141)
388 KOG1410 Nuclear transport rece 40.2 5.1E+02 0.011 28.0 21.6 260 74-357 6-284 (1082)
389 PF01417 ENTH: ENTH domain; I 39.7 1.1E+02 0.0024 24.9 6.3 95 393-506 15-121 (125)
390 KOG2073 SAP family cell cycle 39.5 5.9E+02 0.013 28.5 17.4 39 194-232 183-221 (838)
391 PF01365 RYDR_ITPR: RIH domain 38.6 93 0.002 28.0 6.3 96 343-455 76-171 (207)
392 PF09758 FPL: Uncharacterised 37.6 1.7E+02 0.0036 24.8 6.9 123 190-312 15-147 (149)
393 PF08767 CRM1_C: CRM1 C termin 37.1 4E+02 0.0087 25.9 14.5 137 218-357 43-194 (319)
394 smart00567 EZ_HEAT E-Z type HE 36.7 37 0.00081 19.3 2.2 15 132-146 2-16 (30)
395 PF04510 DUF577: Family of unk 36.5 2.9E+02 0.0062 24.0 11.3 149 288-453 6-164 (174)
396 PF06743 FAST_1: FAST kinase-l 35.7 1.2E+02 0.0026 21.8 5.2 66 222-288 4-69 (71)
397 PF12074 DUF3554: Domain of un 35.4 4.4E+02 0.0094 25.8 17.5 89 202-294 23-112 (339)
398 cd03565 VHS_Tom1 VHS domain fa 35.2 2.7E+02 0.0058 23.3 10.5 96 393-508 17-117 (141)
399 KOG0889 Histone acetyltransfer 34.9 1.2E+03 0.027 30.9 16.1 281 74-361 985-1310(3550)
400 PF12243 CTK3: CTD kinase subu 33.9 2.8E+02 0.0061 23.2 9.2 104 385-504 12-117 (139)
401 KOG1410 Nuclear transport rece 33.6 6.5E+02 0.014 27.2 17.9 84 419-505 250-333 (1082)
402 KOG2022 Nuclear transport rece 32.2 7.6E+02 0.016 27.6 13.7 192 161-357 464-667 (982)
403 PF13925 Katanin_con80: con80 31.6 2.3E+02 0.005 24.4 7.3 73 199-272 26-98 (164)
404 PF08064 UME: UME (NUC010) dom 31.6 2.5E+02 0.0055 22.1 6.9 70 243-317 11-86 (107)
405 KOG2549 Transcription initiati 30.9 6.4E+02 0.014 26.4 12.8 139 164-313 212-369 (576)
406 PF12765 Cohesin_HEAT: HEAT re 30.6 51 0.0011 20.9 2.2 25 381-405 18-42 (42)
407 KOG2011 Sister chromatid cohes 29.5 9.2E+02 0.02 27.8 15.5 134 341-505 300-434 (1048)
408 KOG1087 Cytosolic sorting prot 29.2 1.6E+02 0.0035 30.3 6.6 69 382-450 39-109 (470)
409 PF15178 TOM_sub5: Mitochondri 28.6 73 0.0016 20.5 2.6 19 19-37 10-29 (51)
410 KOG4524 Uncharacterized conser 27.3 2.1E+02 0.0046 31.9 7.3 94 285-392 803-900 (1014)
411 PF01365 RYDR_ITPR: RIH domain 26.5 3.1E+02 0.0067 24.5 7.6 78 300-392 76-153 (207)
412 PF04869 Uso1_p115_head: Uso1 26.4 6.1E+02 0.013 24.6 16.1 158 242-410 33-231 (312)
413 PF14663 RasGEF_N_2: Rapamycin 26.1 1.9E+02 0.0042 23.2 5.4 39 117-157 9-47 (115)
414 cd06561 AlkD_like A new struct 25.5 2.7E+02 0.0059 24.5 7.0 70 288-364 108-177 (197)
415 PF14631 FancD2: Fanconi anaem 25.2 2E+02 0.0044 34.4 7.3 140 250-408 442-581 (1426)
416 smart00802 UME Domain in UVSB 25.0 3.1E+02 0.0067 21.7 6.2 68 116-188 11-83 (107)
417 TIGR01385 TFSII transcription 24.8 1.7E+02 0.0036 28.2 5.6 37 470-506 37-73 (299)
418 PF07923 N1221: N1221-like pro 24.7 1.4E+02 0.003 28.7 5.1 56 113-169 57-126 (293)
419 cd06561 AlkD_like A new struct 24.7 2.9E+02 0.0063 24.3 7.0 69 330-417 108-176 (197)
420 PF14666 RICTOR_M: Rapamycin-i 24.6 5.5E+02 0.012 23.5 12.8 131 255-409 76-224 (226)
421 PRK09169 hypothetical protein; 24.4 1.5E+03 0.033 28.7 29.4 15 256-270 329-343 (2316)
422 PF14631 FancD2: Fanconi anaem 24.1 5.1E+02 0.011 31.2 10.3 136 116-260 431-571 (1426)
423 PF07923 N1221: N1221-like pro 24.0 1E+02 0.0022 29.6 4.1 79 380-458 59-170 (293)
424 PF12463 DUF3689: Protein of u 23.8 6.7E+02 0.014 24.2 13.0 103 217-319 47-178 (303)
425 KOG2011 Sister chromatid cohes 23.8 7.6E+02 0.017 28.4 10.9 128 131-268 301-431 (1048)
426 PF14663 RasGEF_N_2: Rapamycin 23.6 1.5E+02 0.0032 23.8 4.3 38 160-198 9-46 (115)
427 KOG2021 Nuclear mRNA export fa 23.1 1E+03 0.023 26.2 24.2 57 86-148 206-262 (980)
428 PF11229 DUF3028: Protein of u 23.0 8.8E+02 0.019 25.3 13.9 195 87-291 172-372 (589)
429 PF12783 Sec7_N: Guanine nucle 22.9 4.8E+02 0.011 22.3 9.5 80 279-359 67-148 (168)
430 PF07539 DRIM: Down-regulated 22.6 4.6E+02 0.01 21.9 10.1 81 160-253 18-98 (141)
431 PF10257 RAI16-like: Retinoic 22.5 7.6E+02 0.017 24.4 12.6 141 279-422 3-169 (353)
432 KOG4231 Intracellular membrane 22.4 81 0.0018 32.2 3.0 141 254-408 257-397 (763)
433 KOG2038 CAATT-binding transcri 22.3 1.1E+03 0.023 26.1 18.1 91 85-187 316-408 (988)
434 PLN03205 ATR interacting prote 20.7 4.9E+02 0.011 26.0 7.7 114 286-410 324-446 (652)
435 PF12612 TFCD_C: Tubulin foldi 20.1 6.1E+02 0.013 22.4 8.1 115 331-453 11-137 (193)
436 KOG2676 Uncharacterized conser 20.0 1.1E+02 0.0023 29.9 3.2 56 178-233 375-431 (478)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-89 Score=615.28 Aligned_cols=508 Identities=53% Similarity=0.834 Sum_probs=464.5
Q ss_pred CCCchHhhhhcCC--CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhc
Q 009184 6 NSKADSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVW 83 (541)
Q Consensus 6 ~~~~~~~~~~~k~--~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~ 83 (541)
.+.++.|+.+||+ .+.++|+||||+++++++||+||+|.+.|||+.....+...++- -+..++....+|.+.+.|.
T Consensus 4 rf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~--i~meqq~~~elp~lt~~l~ 81 (526)
T COG5064 4 RFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSF--IPMEQQFYSELPQLTQQLF 81 (526)
T ss_pred ccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhcc--CchhHHhhhhhHHHHHHHh
Confidence 3478899999998 48899999999999999999999999999999843222211110 1122233357899999999
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHH
Q 009184 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 163 (541)
|+|.+.++.|+.-+|+++|.+..|+++.++++|++|.+++++.......++.+|+|+|+|+++++..++..++++|++|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 99999999999999999999999999999999999999999955443788999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhhcCC-CCCChhhh
Q 009184 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGK-PQPPFDQV 241 (541)
Q Consensus 164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 241 (541)
++++|.+++.++++++.|+|||++++++.+|+.+++.|++++++.++..+ .+.++.+++.|+|+|||+++ |.+....+
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i 241 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI 241 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999543 35789999999999999998 88889999
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 321 (541)
...+|.|.+++.+.|+++..+|||+++++++++.+.++.+++.|..++|+.+|.+++..++.+|++.+||+++|++.+++
T Consensus 242 sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTq 321 (526)
T COG5064 242 SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQ 321 (526)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA 401 (541)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 401 (541)
.++++|+++.+..+|.++ ...+|++|||+++|+++++.++++ ++++++++|+|+++|++.+..++++|
T Consensus 322 viI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiq-----------avid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 322 VIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQ-----------AVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred hheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHH-----------HHHhcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 889999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhccCC--CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchH
Q 009184 402 AWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGL 479 (541)
Q Consensus 402 ~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 479 (541)
|||+.|...++ .|+.+++|+++|+|++|+++|...|.++.+.+|+++.++++.|+..+.......|.|..++++.||+
T Consensus 390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggm 469 (526)
T COG5064 390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGM 469 (526)
T ss_pred HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccH
Confidence 99999999876 5889999999999999999999999999999999999999999988877666788899999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC--CCCCCCCCCCcccCCCC
Q 009184 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDET--MPPGDASQPGFGFGGNG 529 (541)
Q Consensus 480 ~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 529 (541)
+.|..+|++.|.+||++|+.||++||++|+.-| .|++.+. .|+|+++.
T Consensus 470 d~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~--tftfg~~~ 519 (526)
T COG5064 470 DAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN--TFTFGSNV 519 (526)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcCccccCC--eeecCCCc
Confidence 999999999999999999999999999886433 4554433 78887663
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-87 Score=646.87 Aligned_cols=508 Identities=65% Similarity=1.013 Sum_probs=462.3
Q ss_pred chHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCH
Q 009184 9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDS 87 (541)
Q Consensus 9 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~ 87 (541)
...|+++||+ +++++|+||||++..+|+||+||++.+.|||+....... .. ............+.++..+.|+++
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~S~~~ 80 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELML--DE--LLSDSQSQASNLELMLAALYSDDP 80 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccc--cc--ccchhHHHhhhhHHHHHHHhCCCH
Confidence 3456677776 699999999999999999999999999999992211111 00 011112222347899999999999
Q ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh
Q 009184 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (541)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 167 (541)
..+..+...+|++++.+++|+++.++..|++|.||++|...+++.++.+|+|+|+||++++++.+..+++.|++|.|+++
T Consensus 81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L 160 (514)
T KOG0166|consen 81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL 160 (514)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence 99999999999999999899999999999999999999877669999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHH
Q 009184 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALP 246 (541)
Q Consensus 168 L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~ 246 (541)
+.+++..++++|+|+|+|++++++.+|+.++..|++++|+.++.......+.++++|+|+|||++. |.+.+..+..++|
T Consensus 161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999966655689999999999999999 8899999999999
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhc
Q 009184 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (541)
Q Consensus 247 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~ 326 (541)
.|..++.+.|++|+.++||+++||+++.++.++.+++.|++++|+.+|.+.+..++.+|++++||+++|++.+++.++++
T Consensus 241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS 406 (541)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~ 406 (541)
|+++.|..++...+...++++|||+++||++|+.++++ +++++|++|.|+.+|++++.++|++|+||++
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq-----------aVida~l~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ-----------AVIDANLIPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH-----------HHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999654777999999999999999999999 9999999999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh
Q 009184 407 NATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ 486 (541)
Q Consensus 407 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~ 486 (541)
|++.+|+++++.+|++.|+|++|+++|...|.+++..+|++|.+|++.++......+ ++++.+|+++||+++|+.||
T Consensus 390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~~~IEe~ggldkiE~LQ 466 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT---NPLAIMIEEAGGLDKIENLQ 466 (514)
T ss_pred hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHccChhHHHHhh
Confidence 999999999999999999999999999999999999999999999999998765321 88999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009184 487 THDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 540 (541)
Q Consensus 487 ~~~~~~i~~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (541)
+|.|++||++|.+||++||++|++++..+.+ ..+|+|.++ .|.++|||
T Consensus 467 ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~~--~~~~~~~~~----~~~~~f~f 514 (514)
T KOG0166|consen 467 SHENEEIYKKAYKIIDTYFSEEDDEDDQQPT--TSQFTFQVQ----APDGGFNF 514 (514)
T ss_pred ccccHHHHHHHHHHHHHhcCCCccccccccc--ccccccCCC----CCCCCCCC
Confidence 9999999999999999999988655533212 127777665 37899998
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-43 Score=338.86 Aligned_cols=367 Identities=26% Similarity=0.404 Sum_probs=326.9
Q ss_pred CCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 73 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
+.+|.++++|.. .++.++++|+|+|.++++++ ....+.+++.|++|.|+.++.+++ ..++++|+|+|+||+.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999985 55999999999999999986 777888999999999999999999 999999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184 152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 230 (541)
|+.+++.|+++.|+.++..++. .+..++.|+|+|+|++..+.-....-..+++.|..++ .+.|+++...++|++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988665 7888999999999976622222222233788888888 8999999999999999999
Q ss_pred cCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHH
Q 009184 231 RGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT 308 (541)
Q Consensus 231 ~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~ 308 (541)
.+. +........|++|.|+.+|.+.+..++..|+++++|++.+++.+.+.+++.|+++.|..++. ++...+++.|||+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 887 44555666999999999999999999999999999999999999999999999999999998 6677799999999
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
|+||+.|+.++.+.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++. ++++.|++++++
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~-----------yLv~~giI~plc 413 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIK-----------YLVEQGIIKPLC 413 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHH-----------HHHHcCCchhhh
Confidence 9999999999999999999999999999999 89999999999999998 7899999 999999999999
Q ss_pred HHhhcCchhHHHHHHHHHHHhccCCC-------HHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 388 ALLENAEFDIKKEAAWAISNATSGGT-------HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 388 ~~l~~~~~~v~~~a~~aL~nl~~~~~-------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
.+|...|.++...++.+|.|+...+. .....++-+.|+++.+-.+-.+++.++...+..++...+..
T Consensus 414 dlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 414 DLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99998999999999999999986442 23344555789999998888888888988888877776643
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-42 Score=311.19 Aligned_cols=365 Identities=25% Similarity=0.354 Sum_probs=318.8
Q ss_pred cCCHHHHHHhhc-CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 72 LENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 72 ~~~l~~l~~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
.+.+|++++++. ......+++|+|+|.+++|++ ..+.+.++++|.+|.++++|.+++ .+++++++|+|+|++.+++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence 368999999995 466678999999999999986 677777889999999999999998 89999999999999999999
Q ss_pred HHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184 151 HTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~ 227 (541)
+++.++++|++.+++.++.+. +..+.+.+.|+|+|+|+.. |..-...+.. .++.|.+++ ...|+++...|+|+++
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq-alpiL~KLi-ys~D~evlvDA~WAiS 268 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ-ALPILAKLI-YSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH-HHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 999999999999999998774 4588899999999999654 3222233332 688888888 8889999999999999
Q ss_pred hhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 009184 228 NFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (541)
Q Consensus 228 ~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al 306 (541)
.|+.+. .........|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|.++...+++.||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999986 4444455688888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---ChHHHHHHHhhchhhHHHHHhcCcH
Q 009184 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIAVIEANII 383 (541)
Q Consensus 307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~~~~~~l~~~~~l 383 (541)
|+++|+..|+.++.+.+++.+++|.|+++|.+. +..++++|||+++|.+++ .|++++ ++++.|++
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~ir-----------yLv~qG~I 416 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIR-----------YLVSQGFI 416 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHH-----------HHHHccch
Confidence 999999999999999999999999999999998 999999999999999983 678899 99999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhccCCC---------HHHHHHHH-HcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184 384 GPLVALLENAEFDIKKEAAWAISNATSGGT---------HEQIKFLV-IQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 452 (541)
Q Consensus 384 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~---------~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~ 452 (541)
.+|+.+|...+.++-+-++.++-|+...|. ......++ +.|+++.+-.+-++.+.++...+-.++..++
T Consensus 417 kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 417 KPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred hHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 999999999888899999999999987663 22333334 4799999999888888887776666555544
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.9e-40 Score=362.06 Aligned_cols=408 Identities=20% Similarity=0.215 Sum_probs=344.9
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 72 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
.+.+|.+++.|.++++..+..|++++.+++... .++++.+++.|++|.|+++|.+++++.+|++|+|+|++|+.+++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 468999999999999999999999998887653 5578899999999999999987654799999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHHHH---HhcCChHHHHH
Q 009184 152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRDLV---LSQGGLVPLLA 208 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~r~~i---~~~g~i~~Ll~ 208 (541)
++.+++.|++|.|++++.+++ ..++++|+|+|+|||++.+. .|+.. ...|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998654 45699999999999987544 22221 34567778877
Q ss_pred hhcCCChhhHH----HHHHHHHHhhhcCC-CCCChh-------------------hhhchHHHHHHhhccCChhHHHHHH
Q 009184 209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFD-------------------QVSPALPALAHLIHSNDDEVLTDAC 264 (541)
Q Consensus 209 ~l~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~-------------------~~~~~l~~L~~lL~~~d~~v~~~a~ 264 (541)
.+ +..+...+ ..++|+|.+|+++. +..... ...++++.|+.++...+.+++.+++
T Consensus 347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 77 44443333 36789999999987 333121 1135677889999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhH
Q 009184 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (541)
Q Consensus 265 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 344 (541)
|+|.+++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.++++++..++++|++|.|+++|.++ +..+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999999999999999999999999999999999999999999999998888999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcC
Q 009184 345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG 424 (541)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 424 (541)
+++|+|+|+|++.++++... .+.+.|+++.|+++|.+++++++..|+|+|.|++..++.+.
T Consensus 505 qeeAawAL~NLa~~~~qir~-----------iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~-------- 565 (2102)
T PLN03200 505 KEDSATVLWNLCCHSEDIRA-----------CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT-------- 565 (2102)
T ss_pred HHHHHHHHHHHhCCcHHHHH-----------HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH--------
Confidence 99999999999996444433 34478999999999999999999999999999998766553
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 504 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~ 504 (541)
++.|+.+|.++++.+...++++|.+++...+.... ........||++.|.+|+.++++++++.|.++|..|
T Consensus 566 -I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~--------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL 636 (2102)
T PLN03200 566 -ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL--------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADI 636 (2102)
T ss_pred -HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH--------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 47788889999999999999999999886554321 122234579999999999999999999999999999
Q ss_pred CCCCCC
Q 009184 505 WLDDED 510 (541)
Q Consensus 505 ~~~~~~ 510 (541)
|....+
T Consensus 637 ~a~~~d 642 (2102)
T PLN03200 637 FSSRQD 642 (2102)
T ss_pred hcCChH
Confidence 986554
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=8.7e-38 Score=346.70 Aligned_cols=416 Identities=18% Similarity=0.190 Sum_probs=367.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+.++.++.+|.+.+.+.|..++++|+.++.++ ...++.+.+.|++|.|+++|.+++ +.+|..|+|+|.+++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 56788999999999999999999999998664 677888999999999999999988 9999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|++++|+.+| ++.+...+..++|+|.+++..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 667889999999999999754
Q ss_pred CCCCC--------------------------------------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 233 KPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 233 ~~~~~--------------------------------------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
..... .....++++.|+.++.++++.++..|+|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 31110 0012578999999999999999999999999999999
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (541)
.+..+.++..|+++.++.+|.+.+..++..++++|++++.+.. .+...+++.|+++.|+++|.+. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999997544 4455678999999999999998 9999999999999
Q ss_pred HHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHH-H-HHHHHcCChHHHhh
Q 009184 354 NITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-I-KFLVIQGCIKPLCD 431 (541)
Q Consensus 354 nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~i~~L~~ 431 (541)
|++.... ... .+...|+++.|+++|.+++++.|+.|+|+|.+++.....++ . .++...|.+.+|++
T Consensus 720 nLl~~~e-~~~-----------ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~ 787 (2102)
T PLN03200 720 NLLSDPE-VAA-----------EALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVD 787 (2102)
T ss_pred HHHcCch-HHH-----------HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHH
Confidence 9998644 455 67788999999999999999999999999999998776554 3 56667899999999
Q ss_pred hcCCCChHHHHH--HHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009184 432 LLVCPDPRIVTV--CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD 508 (541)
Q Consensus 432 lL~~~~~~~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~ 508 (541)
+|+..|.+.... ++++|..+.+...... ...++|..+++..++++.|.....|.+|.++++|..||+++..+.
T Consensus 788 ~L~~~~~~~~~~~~al~~l~~l~~~~~~~~----~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 788 LLNSTDLDSSATSEALEALALLARTKGGAN----FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHhcCCcchhhHHHHHHHHHHHHhhcccCC----CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 999988876665 8999999998654433 256889999999999999966669999999999999999998753
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-28 Score=222.08 Aligned_cols=365 Identities=19% Similarity=0.244 Sum_probs=316.9
Q ss_pred hhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184 69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 69 ~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~ 148 (541)
..++.++..++..+.++..++|..++.++.+++.. ......+...|.+.++..+-++.+ ..+|..+..+|.|++. +
T Consensus 122 iv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s 197 (550)
T KOG4224|consen 122 IVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-S 197 (550)
T ss_pred EEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-h
Confidence 34567888888888888899999999999999865 555667778999999999777777 8999999999999998 6
Q ss_pred hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHhhcCCChhhHHHHHHHHH
Q 009184 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTL 226 (541)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~i~~Ll~~l~~~~~~~~~~~a~~~L 226 (541)
.++++.++..|++|.|+.++++.+..++..|+.+++||+.+.. .|+.+.+.+ .++.|+.++ +++++.++-.|..+|
T Consensus 198 ~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lAL 275 (550)
T KOG4224|consen 198 RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLAL 275 (550)
T ss_pred hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998876 688888887 899999999 888999999999999
Q ss_pred HhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-hhhHHHH
Q 009184 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPA 305 (541)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~a 305 (541)
.+++............|.+|.++++|+++..........|+.+++-.+- +.-.+++.|++..|+.+|...+ .+++..|
T Consensus 276 rnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchA 354 (550)
T KOG4224|consen 276 RNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHA 354 (550)
T ss_pred hhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhH
Confidence 9999887666666779999999999998887777777889999886544 3345788999999999998765 5699999
Q ss_pred HHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHH
Q 009184 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGP 385 (541)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 385 (541)
..+|.|++.........+.++|.++.+..++.+. .-.+|.+...+++.++... .... ++.+.|++|.
T Consensus 355 vstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~-----------~lld~gi~~i 421 (550)
T KOG4224|consen 355 VSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKE-----------ALLDSGIIPI 421 (550)
T ss_pred HHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHH-----------HHhhcCCcce
Confidence 9999999998888888899999999999999998 8889999999999988743 3345 8899999999
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHH------cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 386 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 386 L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~------~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
|+.++.+.+.+++-.|+.+|.|++. +.++...+++ +|+-..|..++.+.+..+...+.+.+..|+...
T Consensus 422 LIp~t~s~s~Ev~gNaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 422 LIPWTGSESEEVRGNAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred eecccCccchhhcccHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988 5566666554 255668888999988889999999998888654
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-28 Score=223.17 Aligned_cols=363 Identities=20% Similarity=0.221 Sum_probs=310.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+....+...+++.++.++..|...+.+++-. ....-.+++.+++..|+.-+..+. -++|..++.|++|++.- ++.+
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence 5667888899999999999999999988754 333334455566666665555555 69999999999999985 7788
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..+...|++..+.++-++.+..++..+..+|.|+.... +.|..++..|+++.|+.++ +..+..++..++.+++++.-.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence 88889999999999888899999999999999997544 4889999999999999999 899999999999999999977
Q ss_pred CCCCChhhh--hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184 233 KPQPPFDQV--SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (541)
Q Consensus 233 ~~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 310 (541)
......... ..++|.|+.++.++++.++..|..+|.+++..... ...++++|.+|.++++|+++........+.|+.
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 644443333 34999999999999999999999999999976554 455899999999999999999888999999999
Q ss_pred HhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL 390 (541)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l 390 (541)
|++-..-.. -.+.+.|++.+|+.+|....+.+++..|..+|.|+++.+..... .+.+.|.+|.++.++
T Consensus 318 nisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~-----------~i~esgAi~kl~eL~ 385 (550)
T KOG4224|consen 318 NISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVS-----------VIRESGAIPKLIELL 385 (550)
T ss_pred hcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhH-----------HHhhcCchHHHHHHH
Confidence 998755433 36779999999999999886677999999999999997777777 889999999999999
Q ss_pred hcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184 391 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 391 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~ 456 (541)
-++...++.+...++..++.. .....++.+.|+++.|+.++.+.+.+++-.+..+|.|+...-+
T Consensus 386 lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 386 LDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred hcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 999999999999999999884 4667788999999999999999999999999999999986433
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=5.8e-24 Score=219.50 Aligned_cols=388 Identities=20% Similarity=0.180 Sum_probs=314.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (541)
Q Consensus 77 ~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~ 156 (541)
++-..++. ...+...++..|.+++.. ......+.+.|+++.|+.+|++++ .++...++++|.+++. ..+++..+.
T Consensus 254 k~~~l~~k-QeqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~ 328 (708)
T PF05804_consen 254 KLQTLIRK-QEQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMA 328 (708)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 33344444 344555778889898753 455667889999999999999987 9999999999999998 578999999
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC
Q 009184 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236 (541)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 236 (541)
+.|+++.|.+++.+++..++..++++|.|++.+.. .|..+++.|++|+|+.+|. ++..+..++.+|++++......
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r 404 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEAR 404 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhH
Confidence 99999999999999999999999999999997776 7999999999999999993 2346677899999999987666
Q ss_pred ChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 009184 237 PFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 237 ~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 315 (541)
......+++|.+++++.+ +++.+...+++.+.|++... .+.+.+++.++++.|+........ ...++.+.|++.+
T Consensus 405 ~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h 480 (708)
T PF05804_consen 405 SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQH 480 (708)
T ss_pred HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhc
Confidence 666667899999997654 56777788888999998655 456788888899999987644332 2245788999887
Q ss_pred CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--
Q 009184 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-- 393 (541)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-- 393 (541)
+......+. +.+..|+..+..+.+++...++..+|+|+...+.+..+ .+-+.+++|.|...|..+
T Consensus 481 ~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~-----------ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 481 DGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQ-----------LLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred CchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHH-----------HHHhCCHHHHHHHHhCCCCC
Confidence 754333332 47778888888776889999999999999976555444 455789999999999765
Q ss_pred chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC--CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhh
Q 009184 394 EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQ 471 (541)
Q Consensus 394 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 471 (541)
++++..+++..++.++. ++.....+.+.|+++.|+++|+. +|.+++.+++.++..++...+. ...
T Consensus 548 ~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-----------r~~ 614 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-----------REV 614 (708)
T ss_pred ChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-----------HHH
Confidence 56899999999999887 67888888899999999999976 5688999999999999988654 245
Q ss_pred HhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009184 472 MIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 503 (541)
Q Consensus 472 ~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~ 503 (541)
++.+.+....+.+|.++.|++|+..|...++-
T Consensus 615 ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 615 LLKETEIPAYLIDLMHDKNAEIRKVCDNALDI 646 (708)
T ss_pred HHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 66779999999999999999999877655543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=1.9e-22 Score=208.43 Aligned_cols=361 Identities=19% Similarity=0.213 Sum_probs=299.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+.++.+++.|.+++.++...++..|.++... ..+...+.+.|+++.|++++.+++ .+++..++++|.|++. +++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 6899999999999999999999999999654 567888999999999999999988 8999999999999999 58899
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+.. .|..+...++++.+++++...+++.+...+++++.|++.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999765 456779999999998765 7888888899999999987777788888899999999998
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhH
Q 009184 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGN 311 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~n 311 (541)
..+.......++++.|+.........+ .+..+.|++.++......+. +++..|+.++.. ++++....++.+|+|
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 766655555678898887754433222 33578888877744333333 577788888765 467899999999999
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL 390 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l 390 (541)
+...+......+.+.+++|.|..+|..+. .+++.-+++..++.++. ++.... .+.+.|+++.|+.+|
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~-----------lL~~sgli~~Li~LL 585 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAP-----------LLAKSGLIPTLIELL 585 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHH-----------HHHhCChHHHHHHHH
Confidence 99876666666667899999999997652 55789999999999986 455555 777999999999999
Q ss_pred hc--CchhHHHHHHHHHHHhccCCCHHHHHHHH-HcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhh
Q 009184 391 EN--AEFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK 459 (541)
Q Consensus 391 ~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~ 459 (541)
.. +|.++....++++..++... +.+..++ +.+++..|++++.+.++.++..+-.+|..+..+.+...
T Consensus 586 ~~kqeDdE~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 586 NAKQEDDEIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HhhCchHHHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 87 47899999999999999853 4555665 47899999999999999999999999999988877654
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.8e-20 Score=186.50 Aligned_cols=400 Identities=20% Similarity=0.268 Sum_probs=316.2
Q ss_pred CHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 74 ~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
.+.++++.|+.. |+..|.+|+..++.+++..+.+....+--..++|.|+.+|+...+.+++..|+++|++++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 568889999875 9999999999999999987555555444456899999999999889999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
..+++.++||.|+.-|. -+..++.++++.+|-.|++..+. .+++.|++...+..| +.-+..+++.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997554 48899999999999999988773 678999999999998 77788999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCC----ChhhHHH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIP 304 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~~~----~~~v~~~ 304 (541)
.-+...+..+...+|.|..+|++.|.+..+.+|.++.++++. .++..+.+...|++....+++.-. +..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 988888889999999999999999999999999999999854 556778889999999999998654 2346677
Q ss_pred HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCc--------h--hHHHHHHHHHHHHhc---CChHH---------
Q 009184 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--------K--SIKKEACWTVSNITA---GNREQ--------- 362 (541)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--------~--~v~~~a~~~L~nl~~---~~~~~--------- 362 (541)
.++.+..++++++-....+...++...|..+|..... . ..-.+.+-.++-++. ..+..
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 8899999999988777778888888888888865310 0 000111111111111 00000
Q ss_pred ----------------------------------------------HHHH--Hhhchh-----hHHHHHhcCcHHHHHHH
Q 009184 363 ----------------------------------------------IQVI--MHVHAF-----SIIAVIEANIIGPLVAL 389 (541)
Q Consensus 363 ----------------------------------------------~~~~--~~~~~~-----~~~~l~~~~~l~~L~~~ 389 (541)
..++ -+.+.+ +...-+-..++|.|+++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveV 563 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEV 563 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 0000 000000 00111112578999999
Q ss_pred hhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcc
Q 009184 390 LENA-EFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVN 467 (541)
Q Consensus 390 l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 467 (541)
+.+. ++.||..++.||..++...+.+.+..++. ..+-..+..+|.++|..++.-+|.....|++..+..
T Consensus 564 YsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~--------- 634 (1051)
T KOG0168|consen 564 YSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT--------- 634 (1051)
T ss_pred HhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH---------
Confidence 8774 89999999999999999999998888875 566778899999999999999999999999876553
Q ss_pred hhhhHhhhcchHHHHHHHhc
Q 009184 468 VFTQMIDDAEGLEKIESLQT 487 (541)
Q Consensus 468 ~~~~~i~~~~~~~~l~~L~~ 487 (541)
|...|.+.|.+..+.+|..
T Consensus 635 -F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 635 -FSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred -hhhhHhhhhHHHHHHHHhc
Confidence 6778888999999999976
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=7.3e-18 Score=170.32 Aligned_cols=370 Identities=20% Similarity=0.223 Sum_probs=284.3
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR 194 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~r 194 (541)
-+|..+.+|.+.+ +.+|..|+.-+..++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.|+...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3788899999988 99999999999999999999999999999999999999999999999999999999965544 56
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC--------------ChhHH
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--------------DDEVL 260 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--------------d~~v~ 260 (541)
-.+.+.++++.++++|....|.++++.++.+|+||+..+ ......+...++.|...+-.+ +.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 667788999999999987889999999999999999984 334445566666665543211 35688
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhC------CCChhhHHHHHHHHhHhhcCCc-----hh---------
Q 009184 261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLM------HPSPSVLIPALRTVGNIVTGDD-----MQ--------- 319 (541)
Q Consensus 261 ~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~-----~~--------- 319 (541)
.++..||.|++....+..+.+.+. |++..|+..++ ..+....+.|+.++.|+..--. ..
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999998666666666554 89999988875 2456677888888888864221 00
Q ss_pred -----------------HHH----------------------HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184 320 -----------------TQC----------------------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 320 -----------------~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (541)
... +....++...+.+|....++.+.+.++.+|-|++++..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 000 11222344445555544477888999999999998533
Q ss_pred HHHHHHHhhchhhHHHH-HhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC--
Q 009184 361 EQIQVIMHVHAFSIIAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-- 437 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~l-~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~-- 437 (541)
.-..++ .. .+ .+..+++.|++++..++..|...++.+|.|++.+. ..+.++..++++.|++.|....
T Consensus 552 ~~~~~~------~~-~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~---rnk~ligk~a~~~lv~~Lp~~~~~ 621 (717)
T KOG1048|consen 552 TWSEYM------RG-AVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI---RNKELIGKYAIPDLVRCLPGSGPS 621 (717)
T ss_pred cchhHH------Hh-hhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc---hhhhhhhcchHHHHHHhCcCCCCC
Confidence 221100 00 33 47789999999999999999999999999999853 3345566899999999996533
Q ss_pred ----hHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCC
Q 009184 438 ----PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 438 ----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~i~~~a~~il~~~~~~~~ 509 (541)
.+++..++..|.+++...... ..-+.+.+|+++|..+. ...+++..+.|..++..+|...+
T Consensus 622 ~~~sedtv~~vc~tl~niv~~~~~n-----------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 622 TSLSEDTVRAVCHTLNNIVRKNVLN-----------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred cCchHHHHHHHHHhHHHHHHHhHHH-----------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999765442 44556699999999985 45777899999999999887543
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.78 E-value=3.6e-15 Score=153.21 Aligned_cols=399 Identities=19% Similarity=0.198 Sum_probs=298.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (541)
Q Consensus 76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i 155 (541)
+.++..|.+.+.+....++..|.+++... .+... ..+..+.|...|.+++ +.++..+++.|.+++..+......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34778888888888888999999998753 22222 4567889999999998 9999999999999999877778888
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC-
Q 009184 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP- 234 (541)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~- 234 (541)
.+.++++.++..+.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 88999999999999999999999999999999877644 5566777788888888 55577888889999999987763
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--h---hhHHH-HHHH
Q 009184 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--P---SVLIP-ALRT 308 (541)
Q Consensus 235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~--~---~v~~~-al~~ 308 (541)
........|+++.++..+.++|.-++.+++..+..++. .+...+.+.+.|+++.|..++.+.+ + .+..+ .+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 33344447899999999999889999999999999998 5556788999999999999996532 2 22333 3477
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHH-Hhc-C----c
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAV-IEA-N----I 382 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l-~~~-~----~ 382 (541)
.|+++...+....... ..++..+..++.+. ++..+..|..+++.+++. .+... .+ .+. + +
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~-----------~L~~~~~~~~~~~ 338 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQ-----------LLLQKQGPAMKHV 338 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHH-----------HHHhhcchHHHHH
Confidence 8888875443321111 34666777888888 999999999999999864 55554 44 222 2 3
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhccCCCH---HHH----HHHH---HcCChH-HHhhhcCCCChHHHHHHHHHHHHH
Q 009184 383 IGPLVALLENAEFDIKKEAAWAISNATSGGTH---EQI----KFLV---IQGCIK-PLCDLLVCPDPRIVTVCLEGLENI 451 (541)
Q Consensus 383 l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~---~~~----~~l~---~~~~i~-~L~~lL~~~~~~~~~~~l~~L~~l 451 (541)
+..+.....++..++|..++.++.++...+.. +.+ +... ..+... .+.++++.+=++++..++..|..+
T Consensus 339 l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l 418 (503)
T PF10508_consen 339 LKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQAL 418 (503)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 44444555566789999999999999655432 111 1111 224455 788888888899999999999999
Q ss_pred HHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184 452 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
+...-. ...+....|+++.+-+=....+.+..+.-..++.+....
T Consensus 419 ~~~~Wg-----------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 419 AAQPWG-----------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred hcCHHH-----------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 875322 233444556666555445667888888888888887643
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=4.8e-15 Score=152.28 Aligned_cols=402 Identities=19% Similarity=0.175 Sum_probs=293.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (541)
Q Consensus 76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i 155 (541)
..+++.|... .....++..+...+.. .+..+ .-..+.+...|++.+ .+....++.+|..+.... .....
T Consensus 6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~----~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l- 74 (503)
T PF10508_consen 6 NELLEELSSK--AERLEALPELKTELSS--SPFLE----RLPEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL- 74 (503)
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHH----hchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH-
Confidence 3445555443 3345555555554432 12122 222334788888776 777788888999888732 22222
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC
Q 009184 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (541)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 235 (541)
..+..+.|...|.++++.++..+++.|++++.++......+.+.+.++.++..+ .+++..+...|+.+|..++...+.
T Consensus 75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence 346678999999999999999999999999988887778888899999999999 889999999999999999987654
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 009184 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 315 (541)
.......+.++.|..++...+..++..++.++.+++..+++....+.+.|+++.++..+.++|.-++..++.++..++.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 4444446668889999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHhcCchHHHHHhhcCCC-ch---h-HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184 316 DDMQTQCVIEYQALPCLLNLLSGNY-KK---S-IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL 390 (541)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l 390 (541)
.+...+.+.+.|+++.|..++.+.. ++ . .-.......++++...+..+. ... ..++..+.+++
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~-----------~~~-p~~~~~l~~~~ 299 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVL-----------ELY-PAFLERLFSML 299 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHH-----------HHH-HHHHHHHHHHh
Confidence 6666778899999999999997653 22 1 122333566777764444332 111 24566677777
Q ss_pred hcCchhHHHHHHHHHHHhccCCCHHHHHHH-HHc-----CChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCC
Q 009184 391 ENAEFDIKKEAAWAISNATSGGTHEQIKFL-VIQ-----GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT 464 (541)
Q Consensus 391 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l-~~~-----~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 464 (541)
.+.|+..+..|..+++.+.. +.+....| ... .++..+.........+++..++.++.+++..++..... +
T Consensus 300 ~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~--~ 375 (503)
T PF10508_consen 300 ESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN--D 375 (503)
T ss_pred CCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH--H
Confidence 88899999999999999986 55666666 333 24666666777788899999999999998765431100 0
Q ss_pred CcchhhhHhhhcc--hHH-HHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184 465 DVNVFTQMIDDAE--GLE-KIESLQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 465 ~~~~~~~~i~~~~--~~~-~l~~L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
-.+.....++..+ ... .+..+...|-+|++-.+..++...+..
T Consensus 376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 0011122222222 222 566677888899999999999887654
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.76 E-value=3.2e-16 Score=158.58 Aligned_cols=361 Identities=20% Similarity=0.234 Sum_probs=274.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh--H
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--H 151 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~--~ 151 (541)
.+|+.+..|.+.++.+|-.|+..+..+.-+ ++.....+.+.|.|+.||.+|.+.. .+++..|+++|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfg-d~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFG-DNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhh-hHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 679999999999999999999999888654 3555667778999999999999998 99999999999999998765 7
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-------------Chhh
Q 009184 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------------PKLS 217 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-------------~~~~ 217 (541)
+-.+.+.++|+.++++|.. .|.++++.+..+|+||++.+. ++..++.. .+..|...+... .+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 8888899999999999987 889999999999999998744 66666554 566666554211 1367
Q ss_pred HHHHHHHHHHhhhcCC-CCC-ChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCh-----HHHHH----
Q 009184 218 MLRNATWTLSNFCRGK-PQP-PFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTN-----DKIQA---- 280 (541)
Q Consensus 218 ~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~l~~~~~-----~~~~~---- 280 (541)
+..+++.+|.|++... ... ..-...|++..|+..++ ..|..-.++|...+.|++..-. ...+.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 8899999999999854 222 23334788888888776 2356677888888888875321 00000
Q ss_pred --------------------------------------------HHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 009184 281 --------------------------------------------VIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 281 --------------------------------------------~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~ 315 (541)
+....++..-..+| .+.+..+.+.+..+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 01111222223333 334567889999999999987
Q ss_pred Cch----hHHHH-HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184 316 DDM----QTQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL 390 (541)
Q Consensus 316 ~~~----~~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l 390 (541)
... ....+ ....+++.|+.+|..+ +..+...++.+|.|++.+-.. + .++..++++.|++.|
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rn--k-----------~ligk~a~~~lv~~L 615 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRN--K-----------ELIGKYAIPDLVRCL 615 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchh--h-----------hhhhcchHHHHHHhC
Confidence 652 23334 5778999999999999 999999999999999985332 3 566679999999999
Q ss_pred hcC------chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHH
Q 009184 391 ENA------EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILK 453 (541)
Q Consensus 391 ~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~ 453 (541)
... +.++...++.+|.|++.. +....+.+.+.+.++.|+-+..+. +++....+...|..|=.
T Consensus 616 p~~~~~~~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 616 PGSGPSTSLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred cCCCCCcCchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 764 368899999999999974 678888899999999999988774 45677666665555543
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.75 E-value=2e-16 Score=148.11 Aligned_cols=356 Identities=14% Similarity=0.106 Sum_probs=259.8
Q ss_pred CCCHHHHHHHHHHHHHHHccC--CCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCCh
Q 009184 84 SNDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i 161 (541)
..+..+...+..++......+ ++.....-+.++++..|.+..++++ .++..++.++|+|+|.++.+.|..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 344556666666776665321 1111233456788899999999887 8999999999999999999999999999997
Q ss_pred HHHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCC
Q 009184 162 PIFVKLLYS-------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 162 ~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
..++.+|+. .+.+....++..|.|..-++...+..+++.|++++|...+. ...+....+..+..+.|+.+-.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 777777754 23577778889999999999999999999999999888773 3344444444444333333221
Q ss_pred -C-CCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CC-------hhhH
Q 009184 234 -P-QPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-------PSVL 302 (541)
Q Consensus 234 -~-~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~-------~~v~ 302 (541)
. ..++.....+.-.+++++.+ -.+++.+-+...+.+.++++.-. -.+.+.|++..++.++.. +. ....
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 0 11222234455556666653 35667777788888888766543 336778999999998855 21 1234
Q ss_pred HHHHHHHhHhhcCCchhHHHHHhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcC
Q 009184 303 IPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEAN 381 (541)
Q Consensus 303 ~~al~~L~nl~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~ 381 (541)
..++....-+..|.+... .+...+ +++.+.+++.+. +....-.+..+++|+++.+...+ ++++.+
T Consensus 291 k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci------------~~v~~~ 356 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICI------------QLVQKD 356 (604)
T ss_pred HhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHH------------HHHHHH
Confidence 445555555666665543 455444 899999999999 88999999999999999755544 789999
Q ss_pred cHHHHHHHhhc-----CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184 382 IIGPLVALLEN-----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 382 ~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~ 456 (541)
++..|++.+.. ++.+++..++.||.|+.... .....++..|+.+.+..+++...|.++...+..++.+....+
T Consensus 357 ~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 357 FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 99999999865 46889999999999998732 334566889999999999999999999999999988776554
Q ss_pred h
Q 009184 457 A 457 (541)
Q Consensus 457 ~ 457 (541)
+
T Consensus 435 ~ 435 (604)
T KOG4500|consen 435 Y 435 (604)
T ss_pred H
Confidence 3
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=8.9e-15 Score=153.35 Aligned_cols=360 Identities=17% Similarity=0.149 Sum_probs=257.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh---hH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---EH 151 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~---~~ 151 (541)
++-+....+|+++..|..|+..|..+...-++.....+ ..+.+.|.+.+++++.+ ++..|+++++.++...+ ..
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHH
Confidence 34444455689999999999999988765323222222 22577788888888845 99999999999987553 33
Q ss_pred HHHHHhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHH
Q 009184 152 TKVVIDHGAVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTL 226 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L 226 (541)
.+.+. ..+|.++..+. ..+......++.+|..++...+++-...+.. ++...+.+.. +.-+..++..|+.+|
T Consensus 197 ~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 197 VDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33333 35676666554 4667777889999999998777654444433 4555555553 345789999999999
Q ss_pred HhhhcCCCCCC---hhhhhchHHHHHHhhccC--C--------------hhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 009184 227 SNFCRGKPQPP---FDQVSPALPALAHLIHSN--D--------------DEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287 (541)
Q Consensus 227 ~~l~~~~~~~~---~~~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 287 (541)
..+++..|... ......+++.++.++... | ..--..|..++-.++.+=... .+-.-++
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~ 350 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLF 350 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHH
Confidence 99998853222 224466777777776421 1 012334555565555332211 1112356
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM 367 (541)
Q Consensus 288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 367 (541)
+.+..++.+++|.-|..++.+|+.++.|+.......+ ..+++.+++.|.++ ++.||..||.+++.++.+-...++
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iq--- 425 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQ--- 425 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHH---
Confidence 7777888999999999999999999999987776654 37899999999999 999999999999999998777777
Q ss_pred hhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChH-HHhhhcCCCChHHHHHHH
Q 009184 368 HVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK-PLCDLLVCPDPRIVTVCL 445 (541)
Q Consensus 368 ~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~-~L~~lL~~~~~~~~~~~l 445 (541)
.-...-+++.|+..+.+. +++|+.+|+.++.|++..+..+.+....+ +++. .|..++.++.+.+++.++
T Consensus 426 --------k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 426 --------KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred --------HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHH
Confidence 667778888999999885 68999999999999998776665554333 3455 555566778889999999
Q ss_pred HHHHHHHHhhHh
Q 009184 446 EGLENILKVGEA 457 (541)
Q Consensus 446 ~~L~~l~~~~~~ 457 (541)
.+|..+....+.
T Consensus 497 taIasvA~AA~~ 508 (1075)
T KOG2171|consen 497 TAIASVADAAQE 508 (1075)
T ss_pred HHHHHHHHHHhh
Confidence 999998876554
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=2.7e-15 Score=158.10 Aligned_cols=366 Identities=20% Similarity=0.187 Sum_probs=276.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC--cHHHHHHHHHHHHHHhcCChh
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~--~~~i~~~a~~~L~~l~~~~~~ 150 (541)
+....++.++...|+ ..-.+.|..+.+. ....-.+...|.+|.|+++|.-++ +.+.+..|-.+|.||....++
T Consensus 197 ets~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD 271 (2195)
T KOG2122|consen 197 ETSNSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD 271 (2195)
T ss_pred hhhhHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 344566667666665 4455556656443 444567778999999999997654 367888999999999987776
Q ss_pred HHHHHHhCCChHHHHH----------hhCC-----CCHHH---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-
Q 009184 151 HTKVVIDHGAVPIFVK----------LLYS-----PSDDV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN- 211 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~----------lL~~-----~~~~v---~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~- 211 (541)
....-.+..+++.|-+ ++.. ....+ ...|+.+|..++.+ .++|..+-+.|++..|-.++.
T Consensus 272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~v 350 (2195)
T KOG2122|consen 272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQV 350 (2195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHH
Confidence 6544333333333322 1211 11112 22556666666544 458999999999999988772
Q ss_pred ----------CCChhhHHHHHHHHHHhhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHH
Q 009184 212 ----------GQPKLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279 (541)
Q Consensus 212 ----------~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~ 279 (541)
......+++++..+|.||+.++.. .......|++.+++..|.+..+++..-....|.||+-..+.+..
T Consensus 351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK 430 (2195)
T KOG2122|consen 351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK 430 (2195)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence 122457899999999999999832 33445689999999999998889988899999999977665555
Q ss_pred HH-HHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCCchhHHHHH-hcCchHHHHHhhcCCC---chhHHHHHHHHHH
Q 009184 280 AV-IEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNY---KKSIKKEACWTVS 353 (541)
Q Consensus 280 ~~-~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~ 353 (541)
.+ -+.|-+..|+.. |...+....+..+.+|+||+.++.++...+- -.|.+.+|+.+|.... ...+...|-.+|.
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 55 445878777766 4556677889999999999988776654443 4699999999998652 3467788888888
Q ss_pred HHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHh
Q 009184 354 NITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 430 (541)
Q Consensus 354 nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~ 430 (541)
|+.. ...+..+ .+.+++.+..|++.|++....+..++|.+|.||... +++..++|++.|.+..|.
T Consensus 511 NVSS~IAt~E~yRQ-----------ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLr 578 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQ-----------ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLR 578 (2195)
T ss_pred HHHhHhhccchHHH-----------HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHH
Confidence 8876 4666677 778999999999999999999999999999999986 678889999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184 431 DLLVCPDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 431 ~lL~~~~~~~~~~~l~~L~~l~~~~~ 456 (541)
.++.+.+..+..-...+|.|++..-+
T Consensus 579 nLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 579 NLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999999999999999999997653
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.2e-14 Score=135.18 Aligned_cols=377 Identities=18% Similarity=0.116 Sum_probs=279.4
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHH
Q 009184 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 163 (541)
...+.+...|+..|.+++.. ...-..+...+++..||+.|..++ .++.......|..++- ..+++..+.+.|++..
T Consensus 274 ~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveK 349 (791)
T KOG1222|consen 274 RKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEK 349 (791)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHH
Confidence 34455666778888888743 444556778899999999999988 8999999999999887 5778888889999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhc
Q 009184 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (541)
Q Consensus 164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 243 (541)
|++++...+++++...+..+.|++-++. .|...+..|.+|.+..++..++. ..-|+..+..++.+...........
T Consensus 350 L~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTd 425 (791)
T KOG1222|consen 350 LLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTD 425 (791)
T ss_pred HHHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHH
Confidence 9999999999999999999999998876 77788899999999999954433 3346667777777665555556688
Q ss_pred hHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184 244 ALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (541)
Q Consensus 244 ~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~ 321 (541)
+++.+.+.+-+ .+.+|-...+....|++-+ ..+.+.+++...+..|+..- +..++ .....+.|++.+......
T Consensus 426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn 500 (791)
T KOG1222|consen 426 CIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQN 500 (791)
T ss_pred HHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHH
Confidence 99998887654 4555544444444456533 23456677777777777654 44443 234566777776554444
Q ss_pred HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--chhHHH
Q 009184 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--EFDIKK 399 (541)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~ 399 (541)
.+++ .+.-|...++...+.....++..+++|+...+-+.-+ .+-+.+++|.+-..|..+ ..+++.
T Consensus 501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~-----------ilq~~~LvPw~k~~L~pga~eddLvL 567 (791)
T KOG1222|consen 501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAK-----------ILQSENLVPWMKTQLQPGADEDDLVL 567 (791)
T ss_pred HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHH-----------HHhhccccHHHHHhhcCCccchhhhh
Confidence 4544 4566777777665677888999999999886666555 556778999999988764 467788
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC--CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcc
Q 009184 400 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE 477 (541)
Q Consensus 400 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 477 (541)
..+.+++.++. +......+...++++.|+++|+. .|.+++.+++..+..++...-. ..-++.+..
T Consensus 568 ~~vi~~GT~a~--d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-----------r~~miket~ 634 (791)
T KOG1222|consen 568 QIVIACGTMAR--DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-----------RRLMIKETA 634 (791)
T ss_pred HHHHHhhhhhh--hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-----------HHHHHhhcc
Confidence 88888888776 44555666688999999999986 5677888888888888876322 244677777
Q ss_pred hHHHHHHHhcCCCHHHHHHHHH
Q 009184 478 GLEKIESLQTHDNAEIYEKSVK 499 (541)
Q Consensus 478 ~~~~l~~L~~~~~~~i~~~a~~ 499 (541)
.-..+.+|.+..|.+|++.+..
T Consensus 635 ~~AylIDLMHDkN~eiRkVCDn 656 (791)
T KOG1222|consen 635 LGAYLIDLMHDKNAEIRKVCDN 656 (791)
T ss_pred chHHHHHHHhcccHHHHHHHHH
Confidence 7788999999999998876543
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=4.6e-14 Score=128.47 Aligned_cols=309 Identities=13% Similarity=0.139 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC-CcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (541)
+++...-.+++.+|..+... .| .+.+......++.+|... ++.++....+.++..-+.....+++.+++.++++
T Consensus 118 ~~~~~~l~ksL~al~~lt~~--qp---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHK--QP---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcC--Cc---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 45666777777777766543 22 244566788888888653 2378888889999998888899999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 163 IFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 163 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
.+.+.|.. ....+.+.+.|++.-+..++. .....+...|++..|...+...-++.+...++.+|..|+-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99987765 334577779999999876553 23456677778889999997777899999999999999877
Q ss_pred CCCCChhhhhchHHHHHHhhccC-Chh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCChhhHHHHH
Q 009184 233 KPQPPFDQVSPALPALAHLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPSVLIPAL 306 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~-d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~v~~~al 306 (541)
+.........|++..++.++.+. +.. ....+|..|..++. +++....+++.|+.+.++.++ ..++|.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 65555566789999999999863 333 45677888888874 455667899999999999987 346789999999
Q ss_pred HHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHH
Q 009184 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGP 385 (541)
Q Consensus 307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 385 (541)
.+++-++-..+++...+++.|+-...++.|+-. ....+++.|||.+.|++..+.++.. .++. ..++.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~-----------~~l~-~GiE~ 419 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT-----------ILLA-NGIEK 419 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc-----------hHHh-ccHHH
Confidence 999999999999998999999999999988743 3568999999999999998888876 6665 56788
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 386 LVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 386 L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
|+......++.....|-.+|..+-.
T Consensus 420 Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 420 LIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHhcCccHHHHHHHHHHhcCc
Confidence 8888888888888888888888754
No 21
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.1e-13 Score=126.10 Aligned_cols=317 Identities=16% Similarity=0.180 Sum_probs=245.9
Q ss_pred cCCHHHHHHhh---cCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC
Q 009184 115 SGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD 189 (541)
Q Consensus 115 ~g~i~~Lv~lL---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~ 189 (541)
.|..+.++.++ .+++ ..+...++.+|..++.+.|+. ++..++..++.+|.. ++.++....+.++..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45555555443 3444 778889999999998876654 456778888888754 6788888888888888888
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC-hh---------hhhchHHHHHHhhccC-Chh
Q 009184 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FD---------QVSPALPALAHLIHSN-DDE 258 (541)
Q Consensus 190 ~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~---------~~~~~l~~L~~lL~~~-d~~ 258 (541)
.+..|+.+++.++.+.+...|.......+.+.++|++.-|...+...- +- .-.+++..|...+... |+.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 888999999999888888788666666899999999999987763221 11 1245677888888743 799
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-h---hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH
Q 009184 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-P---SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (541)
Q Consensus 259 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~---~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (541)
++.+++.+|..++-. ++..+.+.+.|+++.+++++.+.+ . .....++..|..++ |++.....+++.|+.+.++.
T Consensus 258 ~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 999999999999854 446677999999999999997743 2 34567788888777 57777778999999999998
Q ss_pred hhc-CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--chhHHHHHHHHHHHhccC
Q 009184 335 LLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSG 411 (541)
Q Consensus 335 lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~ 411 (541)
++. +..+|.|..+++.+++-++-.+|+.-. .+++.|+-...++.|+.. ...+++.|+|.+.|++..
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa-----------~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSA-----------KAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHH-----------HHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 874 444889999999999999998899888 899999999999999874 468999999999999986
Q ss_pred CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHH
Q 009184 412 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 451 (541)
Q Consensus 412 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l 451 (541)
..+++..++..| ++.|+..-...++.....+-.+|+-|
T Consensus 405 -s~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 405 -SAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred -hhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 345666666655 67777777777766655555555544
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.68 E-value=6.8e-14 Score=131.35 Aligned_cols=398 Identities=12% Similarity=0.062 Sum_probs=288.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC------CcHHHHHHHHHHHHHHhc
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE------DYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~------~~~~i~~~a~~~L~~l~~ 146 (541)
+.++.+.+...|+|.++-.+..++|.+++... ++....+.+.|+-..+++.|+.- .+.+...-+...|.|...
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677777788898999999999999998764 78888899999977777777642 134666677788999999
Q ss_pred CChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHH
Q 009184 147 GTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (541)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~ 223 (541)
++.+.+..+.+.|+++.|...+.- .+....+.++..++|+.+--. ...+...+......+++++.....+++.+.+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999887754 677788888888888764322 23344556667778888887777888899999
Q ss_pred HHHHhhhcCCCCCChhhhhchHHHHHHhhcc-CC-------hhHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhh
Q 009184 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND-------DEVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL 294 (541)
Q Consensus 224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~d-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~l~~L~~lL 294 (541)
..+...+.++...-.....|.+..++.+++. .+ -.....++....-+..++++ .+.+...+ +++.+.+.+
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence 9999999887555555557788888888764 21 11233444444444445544 45555555 899999999
Q ss_pred CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC----CchhHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 009184 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITAGNREQIQVIMHVH 370 (541)
Q Consensus 295 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 370 (541)
.+++......+..+|||++..++.. ..+++.+++..|+.+|... .+-+++..++.+|.|++-.-+. ..
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-ka------ 396 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-KA------ 396 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-hh------
Confidence 9999999999999999999855544 4788899999999999652 1567889999999999984333 33
Q ss_pred hhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHH-HcCChHHHhhhcCCCChH-HHHHHHHHH
Q 009184 371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPR-IVTVCLEGL 448 (541)
Q Consensus 371 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~-~~~~~l~~L 448 (541)
.++.+|+.+.++..++...|.+...-+..+.-+..+... ..-.+. ....++.|++--+++|.. +.--..+.+
T Consensus 397 -----~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~-~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll 470 (604)
T KOG4500|consen 397 -----HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY-IACELAKNPELFEKLVDWSKSPDFAGVAGESNRLL 470 (604)
T ss_pred -----hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH-HHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHH
Confidence 788999999999999999999999888888877664221 222233 235577777776777654 555555666
Q ss_pred HHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHH
Q 009184 449 ENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 495 (541)
Q Consensus 449 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~ 495 (541)
.-+++..-..+ +.-.+...||++........++--.+.
T Consensus 471 ~~lIkHs~~kd---------v~~tvpksg~ik~~Vsm~t~~hi~mqn 508 (604)
T KOG4500|consen 471 LGLIKHSKYKD---------VILTVPKSGGIKEKVSMFTKNHINMQN 508 (604)
T ss_pred HHHHHhhHhhh---------hHhhccccccHHHHHHHHHHhhHHHhH
Confidence 66665432211 344455677777766665444444443
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.7e-14 Score=142.02 Aligned_cols=404 Identities=16% Similarity=0.182 Sum_probs=250.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHH-HHh---cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-VIR---SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~i~---~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~ 148 (541)
+.+|.+.+.|.+++...+.-|..+|.|+.... ....+. +.+ .-++|.++++.++++ |.+|..|+.|+..+.-..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 46888999999999888889999999987442 111110 000 236899999999998 999999999999877644
Q ss_pred hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (541)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 228 (541)
+.....-++ ..++.+..+-..+++++|.+.+.+|..+..-.+.--..- -.++++.++... ++.|+++...||..+..
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~t-qd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRT-QDVDENVALEACEFWLA 282 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence 433322222 356677777778999999999999999886554311111 123566666665 77888999999999999
Q ss_pred hhcCCCCCC--hhhhhchHHHHHHhhccCChhH--HH-------------------------------------------
Q 009184 229 FCRGKPQPP--FDQVSPALPALAHLIHSNDDEV--LT------------------------------------------- 261 (541)
Q Consensus 229 l~~~~~~~~--~~~~~~~l~~L~~lL~~~d~~v--~~------------------------------------------- 261 (541)
++....... ......++|.|+.-+..++.++ ..
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 998852111 1233566666665443222111 00
Q ss_pred ---HHHHHHHHhccCChHHHHHHHHhCcHHHHHH----hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH
Q 009184 262 ---DACWALSYLSDGTNDKIQAVIEAGVFPRLAE----FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (541)
Q Consensus 262 ---~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~----lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (541)
..-|-|...+...-+...-+....+++.++. .|.+++|.+++.++.++|.++.|+-...-.-+ ..++|.|+.
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~ 441 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLS 441 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHH
Confidence 0013333322222222222333345555544 45678999999999999999987743321111 247899999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcC--ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184 335 LLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 412 (541)
+|.+. .+-||.-.||+|+..+.- .....+ ++. .++..|++.+-+++.+|++.||.|+..+-..+
T Consensus 442 ~L~DK-kplVRsITCWTLsRys~wv~~~~~~~-----------~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 442 LLDDK-KPLVRSITCWTLSRYSKWVVQDSRDE-----------YFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HhccC-ccceeeeeeeeHhhhhhhHhcCChHh-----------hhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 99998 999999999999998761 111111 221 35566666667788999999999999998766
Q ss_pred CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC----
Q 009184 413 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH---- 488 (541)
Q Consensus 413 ~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~---- 488 (541)
..+...++-. ++..|+..+.--..+-.....+++..+.+.-...-+ ...|.+.+. .-.+++.+.|.++
T Consensus 508 ~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln-----~~~YiqiLm-PPLi~KW~~lsd~DKdL 579 (885)
T KOG2023|consen 508 GEELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALN-----KPAYIQILM-PPLIEKWELLSDSDKDL 579 (885)
T ss_pred cchhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcC-----cHHHHHHhc-cHHHHHHHhcCcccchH
Confidence 6555554322 344444444332222233344566666554322111 112333332 3333444433222
Q ss_pred --------------------CCHHHHHHHHHHHHHh
Q 009184 489 --------------------DNAEIYEKSVKLLETY 504 (541)
Q Consensus 489 --------------------~~~~i~~~a~~il~~~ 504 (541)
-.+.||.++..|+++.
T Consensus 580 fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t 615 (885)
T KOG2023|consen 580 FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKT 615 (885)
T ss_pred HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence 3478999999999865
No 24
>PRK09687 putative lyase; Provisional
Probab=99.61 E-value=1.2e-13 Score=130.42 Aligned_cols=255 Identities=14% Similarity=0.120 Sum_probs=199.4
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
-++.|..+|.+.+ ..++..|+++|..+.. ..+++.+..++.++++.+|..++|+|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4778899999888 9999999999998764 13467788889999999999999999998532211
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 276 (541)
....++.|..++..++++.++..++.+|.+++...... ...+++.+...+.++++.|+..++++|+.+.. .
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11246667777558889999999999999997654322 23356667777888899999999999977642 1
Q ss_pred HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (541)
Q Consensus 277 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (541)
..++.|+.+|.++++.++..|+.+||.+...++ .+++.|+.+|.+. +..||..|+++|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 367889999999999999999999999943232 3466788999888 9999999999999863
Q ss_pred cCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC-C
Q 009184 357 AGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-C 435 (541)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~ 435 (541)
++ .++|.|+..+.+++ ++..++.+|+++-. + ..++.|..+++ .
T Consensus 221 --~~--------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~ 264 (280)
T PRK09687 221 --DK--------------------RVLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKF 264 (280)
T ss_pred --Ch--------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhC
Confidence 22 25778888888765 67889999999854 2 25788888886 7
Q ss_pred CChHHHHHHHHHHHH
Q 009184 436 PDPRIVTVCLEGLEN 450 (541)
Q Consensus 436 ~~~~~~~~~l~~L~~ 450 (541)
+|+.++..+.++|..
T Consensus 265 ~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 265 DDNEIITKAIDKLKR 279 (280)
T ss_pred CChhHHHHHHHHHhc
Confidence 889999888887753
No 25
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6e-12 Score=119.94 Aligned_cols=361 Identities=15% Similarity=0.146 Sum_probs=275.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
..+..+++.|..++.++.......|.++.-. .++...+.+.|++..|+.++...+ ++++...+..+.|++.+ ...+
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-cccc
Confidence 3567888999988888888888888887544 566777889999999999999998 99999999999999984 6778
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..++..|.+|.|..++.++.. ...|+..+..++.++. .+..+....+++.+++.+....+..+-...+....|+|-+
T Consensus 380 ~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 889999999999999977543 3457777888877665 6777777788999998877777888877777788899988
Q ss_pred CCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHh
Q 009184 233 KPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVG 310 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~ 310 (541)
..+.+.......+..|...- .+.|.- . ...+.+++.+.......+++ .+..|...++. .+......++.+++
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~l-L---mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLL-L---MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchH-H---HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 76666666677777777653 444443 2 23566677665544444554 45666666654 45678889999999
Q ss_pred HhhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHH
Q 009184 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL 389 (541)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~ 389 (541)
|+.-..-...+.+-....+|++-..|..+- ..++.-+..-+++.++.. ..... .+..+++++.|+++
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~-----------Lla~a~~i~tlieL 598 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCAR-----------LLAPAKLIDTLIEL 598 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHH-----------HhCccccHHHHHHH
Confidence 998766666666667899999999887653 345777777778887764 33333 56688999999999
Q ss_pred hhc--CchhHHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhh
Q 009184 390 LEN--AEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 460 (541)
Q Consensus 390 l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~ 460 (541)
|+. .|.++....++++..+... .....++++ ...-..+++++...+.+++..+-.+|..+........+
T Consensus 599 L~a~QeDDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK 670 (791)
T KOG1222|consen 599 LQACQEDDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK 670 (791)
T ss_pred HHhhcccchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 987 4678888889998888874 344556664 56667899999999999999998999888877766543
No 26
>PRK09687 putative lyase; Provisional
Probab=99.59 E-value=3.7e-13 Score=127.11 Aligned_cols=254 Identities=15% Similarity=0.098 Sum_probs=197.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.++.+...|.+.+..++..|+..|..+-. ..+++.+..++++++ +.++..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 45788999999999999999999987632 235778888888888 99999999999998752211
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 154 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
....++.|..+ ++++++.|+..|+.+||+++...... ...++..+...+ .+++..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11246777766 67789999999999999997443311 111344455556 66789999999999975532
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
...++.|+.++.++++.|+..++.+|+.+...++ .+++.|+..|.+.++.++..|+++|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 4578999999999999999999999999843333 3567789999999999999999999986
Q ss_pred hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh-
Q 009184 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE- 391 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~- 391 (541)
-. ..+++.|+..|.++ + ++..++.+|+++.. +. .+|.|..++.
T Consensus 220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~--------------------a~p~L~~l~~~ 263 (280)
T PRK09687 220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT--------------------LLPVLDTLLYK 263 (280)
T ss_pred CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh--------------------HHHHHHHHHhh
Confidence 43 24688999999886 4 67889999998854 22 5678888886
Q ss_pred cCchhHHHHHHHHHHH
Q 009184 392 NAEFDIKKEAAWAISN 407 (541)
Q Consensus 392 ~~~~~v~~~a~~aL~n 407 (541)
.+|..++..|.++|..
T Consensus 264 ~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 264 FDDNEIITKAIDKLKR 279 (280)
T ss_pred CCChhHHHHHHHHHhc
Confidence 6799999999998863
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.59 E-value=1.4e-12 Score=129.11 Aligned_cols=364 Identities=15% Similarity=0.107 Sum_probs=248.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVI 156 (541)
Q Consensus 78 l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~i~ 156 (541)
++..+...+|+....|..-..+.+.+. .++...+++.|.++.|..+++..+ .++.+.+.+.++.....+.......++
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 444556678888889999999988775 555567899999999999998765 366777788888888888888899999
Q ss_pred hCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhH--HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 157 DHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 157 ~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
+.+.++.|++++.+++ ..+++.++.++.++...++..- .......++..+..++ ..+.....+.-+...+++|...
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccc
Confidence 9999999999999988 8999999999999986654211 1111222344444444 2234444455555556666554
Q ss_pred CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH---HhccCChHHHH----HHHHhCcHHH--HHHhhCCCCh-----
Q 009184 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTNDKIQ----AVIEAGVFPR--LAEFLMHPSP----- 299 (541)
Q Consensus 234 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~l~~~~~~~~~----~~~~~g~l~~--L~~lL~~~~~----- 299 (541)
.........++.+.+.-++.......+..++.+++ .+..+++.... ...+.|+.++ +.+++++++.
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 33444445666666666666666667777777777 44444332221 1222233331 1222222211
Q ss_pred --------------------------------------------------------------------------------
Q 009184 300 -------------------------------------------------------------------------------- 299 (541)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (541)
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence
Q ss_pred ------------------------------------------------------------hhHHHHHHHHhHhhcCCchh
Q 009184 300 ------------------------------------------------------------SVLIPALRTVGNIVTGDDMQ 319 (541)
Q Consensus 300 ------------------------------------------------------------~v~~~al~~L~nl~~~~~~~ 319 (541)
..+.+||.++-+++..-+..
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333222211111
Q ss_pred HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK 399 (541)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 399 (541)
..-+-...+...|++++..+ +..|+..+..+|+|+.-...+... .++..|++..+..++.+.++.++.
T Consensus 412 ~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~ks-----------kfl~~ngId~l~s~~~~~~~n~r~ 479 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKS-----------KFLRNNGIDILESMLTDPDFNSRA 479 (678)
T ss_pred HcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHH-----------HHHHcCcHHHHHHHhcCCCchHHH
Confidence 11112345677888888777 889999999999999986666666 899999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 400 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 400 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
.+.|+|.++..+++......+...=....|..+.+++|+.++++++..++|+....
T Consensus 480 ~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 480 NSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999998776555555555445667778889999999999999999998653
No 28
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.57 E-value=1.6e-13 Score=145.17 Aligned_cols=269 Identities=19% Similarity=0.173 Sum_probs=224.0
Q ss_pred HHH-HHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-----------cHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184 89 VQY-ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVI 156 (541)
Q Consensus 89 ~~~-~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-----------~~~i~~~a~~~L~~l~~~~~~~~~~i~ 156 (541)
-++ .|+..|.|+ +.+ .++.+.+.+.|++..+-+||.-.. +..++..|..+|+||+.|...++..+.
T Consensus 313 H~lcaA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 313 HQLCAALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred hhhHHHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 344 666777776 443 788999999999999988875321 246899999999999999888887777
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-
Q 009184 157 D-HGAVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK- 233 (541)
Q Consensus 157 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~- 233 (541)
. .|++..++..|.+...++....+.+|.||+ .-+...+..+-+.|-+..|.........+..+..++.+||||+.+.
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 5 599999999999988899999999999998 4444467777788888888887767778888999999999999876
Q ss_pred -CCCChhhhhchHHHHHHhhccC----ChhHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 009184 234 -PQPPFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (541)
Q Consensus 234 -~~~~~~~~~~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~---~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a 305 (541)
....+..+.|++-.|+.+|... .-.+++.+-.+|.|.+ ...+...+.+.+...+..|+..|++.+..+...+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 3445667799999999999754 3457777777776665 3455566778889999999999999999999999
Q ss_pred HHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (541)
|.+|+||+..+++..+.+++.|.+++|..++.+. +..+-.-++.+|.|+....+
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence 9999999999999989999999999999999999 88999999999999988543
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=8.9e-13 Score=121.54 Aligned_cols=237 Identities=19% Similarity=0.223 Sum_probs=183.1
Q ss_pred hhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh
Q 009184 241 VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (541)
Q Consensus 241 ~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 319 (541)
..+-++.|+.+|.. .|+.++..++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|+.++.|++...+.+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35667889999984 58999999999999987655 45567888899999999999999999999999999998765544
Q ss_pred HHHHHhcCchHHHHHhh-cCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHH
Q 009184 320 TQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK 398 (541)
Q Consensus 320 ~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 398 (541)
. . ++. .++.+.... ..+-+..++..+..+|.|++..+..+ .++ .+.++.++.++..++..+|
T Consensus 89 ~-~-Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~-------------~~l-~~~i~~ll~LL~~G~~~~k 151 (254)
T PF04826_consen 89 E-Q-IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH-------------HML-ANYIPDLLSLLSSGSEKTK 151 (254)
T ss_pred H-H-HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh-------------hhH-HhhHHHHHHHHHcCChHHH
Confidence 3 2 232 355555543 33336789999999999998753332 333 2579999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHHhhHhhhhc---CCCCcchhhhHhh
Q 009184 399 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNL---GNTDVNVFTQMID 474 (541)
Q Consensus 399 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~~~~~~~~---~~~~~~~~~~~i~ 474 (541)
..++++|.|++. ++...+.++..+++..|+.+++.+ +.++...++..+.+|...-.+.... ..-........|.
T Consensus 152 ~~vLk~L~nLS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~ 229 (254)
T PF04826_consen 152 VQVLKVLVNLSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG 229 (254)
T ss_pred HHHHHHHHHhcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence 999999999998 678889999999999999999876 5678888899999986543332110 0112333446676
Q ss_pred hcc-hHHHHHHHhcCCCHHHHHHH
Q 009184 475 DAE-GLEKIESLQTHDNAEIYEKS 497 (541)
Q Consensus 475 ~~~-~~~~l~~L~~~~~~~i~~~a 497 (541)
+.+ .-++|..|..|++++|+++.
T Consensus 230 e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 230 ESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred cHHHHHHHHHHHHcCCCHHHhhhc
Confidence 666 78899999999999998764
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.4e-11 Score=128.07 Aligned_cols=395 Identities=16% Similarity=0.164 Sum_probs=267.6
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC-hhH
Q 009184 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEH 151 (541)
Q Consensus 74 ~l~~l~~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~-~~~ 151 (541)
.++.+...+. +.|++++.-|+..+|+++... .+.+..=.+..+-..|+..+.+...+.++..-+.++..|+... ++.
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~ 115 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK 115 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc
Confidence 4567777776 588999999999999998763 3333333344556667776666655899999999999999843 221
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 230 (541)
. .++++.|.+..+++++..|+.|+..|+.+...-... +..+.+ +.+.+.+.+ .+++..++..++.++..++
T Consensus 116 W-----Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 116 W-----PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALGAFA 187 (1075)
T ss_pred h-----HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHHHHH
Confidence 1 256788889999999999999999999997543321 111111 233444445 3444449999999999888
Q ss_pred cCCC--CCChhhhhchHHHHHHhh----ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhH
Q 009184 231 RGKP--QPPFDQVSPALPALAHLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVL 302 (541)
Q Consensus 231 ~~~~--~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~ 302 (541)
...+ ..........+|.++..+ ..+|.+....++.+|..++...+......+. .++...+.+..+. +..+|
T Consensus 188 ~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R 266 (1075)
T KOG2171|consen 188 EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIR 266 (1075)
T ss_pred HHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHH
Confidence 7654 222334456666555544 4567777788888888887766654443332 3444444444332 45566
Q ss_pred HHHHHHHhHhhcCCch---------------------------------------------hHHHHH------------h
Q 009184 303 IPALRTVGNIVTGDDM---------------------------------------------QTQCVI------------E 325 (541)
Q Consensus 303 ~~al~~L~nl~~~~~~---------------------------------------------~~~~~~------------~ 325 (541)
..|+.+|..++.+.+. .....+ -
T Consensus 267 ~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~ 346 (1075)
T KOG2171|consen 267 HLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL 346 (1075)
T ss_pred HHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh
Confidence 6666666555432110 000011 0
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHH
Q 009184 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI 405 (541)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL 405 (541)
.-+++.+-.++.+. +..-|+.+..+|+.++.|..+.+. ..++ .+++.++..+.++++.||..|+.|+
T Consensus 347 p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~-----------~~l~-~Il~~Vl~~l~DphprVr~AA~nai 413 (1075)
T KOG2171|consen 347 PPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMI-----------GNLP-KILPIVLNGLNDPHPRVRYAALNAI 413 (1075)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHH-----------HHHH-HHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 11345555677777 889999999999999999998887 6554 7889999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHH
Q 009184 406 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES 484 (541)
Q Consensus 406 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 484 (541)
+.++..-.++..++ ...-+++.|+..+++. ++.+...+..++-+++....+.. ..+|...+.+. ++..
T Consensus 414 gQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~------l~pYLd~lm~~----~l~~ 482 (1075)
T KOG2171|consen 414 GQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI------LEPYLDGLMEK----KLLL 482 (1075)
T ss_pred HhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH------HHHHHHHHHHH----HHHH
Confidence 99988544444333 5567788888888774 56899999999999988766543 34566555432 6777
Q ss_pred HhcCCCHHHHHHHHHHHH
Q 009184 485 LQTHDNAEIYEKSVKLLE 502 (541)
Q Consensus 485 L~~~~~~~i~~~a~~il~ 502 (541)
|..+..+.+++.+..-|.
T Consensus 483 L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 483 LLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HhcCCchhHHHHHHHHHH
Confidence 788888888887766554
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.52 E-value=9.6e-12 Score=137.19 Aligned_cols=276 Identities=18% Similarity=0.203 Sum_probs=215.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
..++.|++.|.++++.++..|+..|..+.. .+.++.|+..|.+++ +.++..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence 356788899999999999999999987632 336888999998887 999999999998885421
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
...+.|...|.++++.+|..++.+|+.+.... ...++..| .++++.++..++.+|..+-.
T Consensus 684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 12356778888899999999999998864221 23456667 78899999999999987521
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
.+.|..++.++++.|+..++.+|..+..... ..++.|..+++++++.++..|+.+|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2346678889999999999999998864322 2367788999999999999999999988
Q ss_pred hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
.... .....+...|.++ ++.||..|+++|+.+.. + ..++.|+.+|.+
T Consensus 803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~--------------------~a~~~L~~~L~D 849 (897)
T PRK13800 803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--D--------------------VAVPALVEALTD 849 (897)
T ss_pred CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c--------------------chHHHHHHHhcC
Confidence 5421 1224577888888 89999999999987742 2 234788999999
Q ss_pred CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHH
Q 009184 393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 450 (541)
Q Consensus 393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~ 450 (541)
++..||..|+++|..+. +++. ..+.|...+++.|+.|+..+..+|..
T Consensus 850 ~~~~VR~~A~~aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 850 PHLDVRKAAVLALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CCHHHHHHHHHHHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999999999972 2332 35677788899999999999888753
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=2.4e-12 Score=118.72 Aligned_cols=196 Identities=18% Similarity=0.232 Sum_probs=163.1
Q ss_pred HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009184 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (541)
Q Consensus 113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 192 (541)
.+++-++.|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..++..+++.+++.|+++|.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 4556689999999987669999999999999877 68899999999999999999999999999999999999997766
Q ss_pred hHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184 193 CRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 271 (541)
.+..+-. .++.+++.+.. .-+..++..++.+|.+|+..... .......+|.++.+|.+++..++..++++|.+|+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4444432 46777775533 34788999999999999866433 2234668999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcC
Q 009184 272 DGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 272 ~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~ 315 (541)
.++. ....++..+++..++.++... +.++...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 7665 456688889999999999775 678899999999999653
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.9e-12 Score=126.53 Aligned_cols=312 Identities=14% Similarity=0.175 Sum_probs=221.1
Q ss_pred cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009184 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (541)
Q Consensus 115 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 190 (541)
..++|.|.++|.+++ ...++-|..+|..|+.++++..+.-+. .-.+|.++++.+++++.+|..|+.++..+.-..
T Consensus 127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 347999999999988 789999999999999988776555221 236899999999999999999999998887554
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 009184 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (541)
Q Consensus 191 ~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 270 (541)
+..-..-++. +++.+..+- .+.+++++.++|.++..|..-.+........++++.++...+..|++|...||.....+
T Consensus 206 ~qal~~~iD~-Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 TQALYVHIDK-FLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred cHHHHHHHHH-HHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 4322222222 455555555 78899999999999999999887777777889999999999999999999999999888
Q ss_pred ccCChHHHHHHHH--hCcHHHHHHhhCCC---------------------------------------------------
Q 009184 271 SDGTNDKIQAVIE--AGVFPRLAEFLMHP--------------------------------------------------- 297 (541)
Q Consensus 271 ~~~~~~~~~~~~~--~g~l~~L~~lL~~~--------------------------------------------------- 297 (541)
+..+. ....+.. ..++|.|+.-+...
T Consensus 284 aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 284 AEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred hcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 87652 1121111 14555555533211
Q ss_pred -----ChhhHHHHHHHHhHhhcCCchhHHHHHhcCc----hHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh
Q 009184 298 -----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQA----LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368 (541)
Q Consensus 298 -----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 368 (541)
+|.+|+....+|.-++. ++...+ +|.|-..|.+. +-.+|+.+..++|.|+.|.-...-.
T Consensus 363 dD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p--- 430 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVP--- 430 (885)
T ss_pred ccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhccc---
Confidence 13456555555555543 222333 44455555566 7899999999999999865443220
Q ss_pred hchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHH-HHHHHHcCChHHHhhhcCCCChHHHHHHHHH
Q 009184 369 VHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG 447 (541)
Q Consensus 369 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~ 447 (541)
++- .++|.|+.+|.+..+-||.-.||+|+..+.+...+. .+++. .++..|...+-+++.+++++++.+
T Consensus 431 -------~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsA 499 (885)
T KOG2023|consen 431 -------HLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSA 499 (885)
T ss_pred -------chH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 111 478999999999999999999999999876432221 12222 245555555556788899998888
Q ss_pred HHHHHH
Q 009184 448 LENILK 453 (541)
Q Consensus 448 L~~l~~ 453 (541)
+..+-+
T Consensus 500 fAtleE 505 (885)
T KOG2023|consen 500 FATLEE 505 (885)
T ss_pred HHHHHH
Confidence 776654
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=99.48 E-value=3.3e-10 Score=119.80 Aligned_cols=382 Identities=13% Similarity=0.107 Sum_probs=259.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
..++.+++.+.++|.+++.-+.-.+.+.+.. ++..-.+ +++.|.+=+++++ |.+|..|++.+++|-. ++..
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence 3678899999999999999888888887643 2222111 3777888888888 9999999999999876 4444
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..+ ++.+.+.+.+.++.||..|+.++.++....++ .+...+.++.|..+| .+.++.+..+|+.+|..++..
T Consensus 139 e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence 433 56788888999999999999999999876663 344567788888877 789999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
.+. ......+.+..++..+..-++..+..++.+|......+.... ..++..+...|++.++.|...|++++.++
T Consensus 210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 543 234445556666666666677777777777765432222211 25778888999999999999999999998
Q ss_pred hcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc-----hhhHH---------HH
Q 009184 313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH-----AFSII---------AV 377 (541)
Q Consensus 313 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-----~~~~~---------~l 377 (541)
....+ .....+. ..+...++.++ ++ +++++..++..|.-++...+.........+ +..++ .+
T Consensus 284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L 360 (746)
T PTZ00429 284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL 360 (746)
T ss_pred cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence 86532 2222221 12335566664 44 678998888888777765555443211111 00111 11
Q ss_pred Hhc----CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 378 IEA----NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 378 ~~~----~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
.+. .++..|.+.+.+.+.+++..++.+++.++..- +. ....++..|+++++.... ++..++..+..|++
T Consensus 361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~-----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilr 433 (746)
T PTZ00429 361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DS-----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVR 433 (746)
T ss_pred cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hH-----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHH
Confidence 221 24455555666668899999999999998642 22 223578899999876443 45567788888876
Q ss_pred hhHhhhhcCCCCcchhhhHhhhcchHHHHHH-H--hcCCCHHHHHHHHHHHHHhCC
Q 009184 454 VGEAEKNLGNTDVNVFTQMIDDAEGLEKIES-L--QTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~-L--~~~~~~~i~~~a~~il~~~~~ 506 (541)
..+.. + .+..|.. + ..-.+++.+....|||-+|-.
T Consensus 434 kyP~~----------~--------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 434 KYPEL----------L--------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD 471 (746)
T ss_pred HCccH----------H--------HHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence 54321 1 1223322 2 344677787888999999864
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=1.4e-12 Score=107.98 Aligned_cols=119 Identities=35% Similarity=0.611 Sum_probs=110.6
Q ss_pred HHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009184 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (541)
Q Consensus 111 ~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 190 (541)
.+++.|+++.|++++.+++ +.++..++++|.+++..+++....+++.|+++.++.++.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4568899999999999988 999999999999999988999999999999999999999999999999999999999988
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 191 ~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
+..+..+...|+++.++..+ ...+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 87888888899999999999 66689999999999999974
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.46 E-value=1.2e-11 Score=130.30 Aligned_cols=326 Identities=19% Similarity=0.196 Sum_probs=223.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
...+.+++.+.+++...+.-+.-.+..+... ++..-.+ +++.+.+=|.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 4789999999999999998888888877643 2322222 4677777788888 9999999999999984 6665
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..+ ++.+.+++.++++.+|..|+.++..+....|.. +... .++.+..++ .++++.++..|+.++..+ +.
T Consensus 113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 544 688899999999999999999999998766642 1122 477888888 788899999999999999 22
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
.+..........+..|..++...++..+..++..+..++......... ..+++.+..++.+.++.+...+++++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 211111344556666677777889999999999999888766544311 35778888888888888999999998877
Q ss_pred hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
..... .-..+++.|..++.++ ++.++..++.+|..++...+..+. .....+..+..+
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~----------------~~~~~~~~l~~~ 315 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF----------------NQSLILFFLLYD 315 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG----------------THHHHHHHHHCS
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh----------------hhhhhhheecCC
Confidence 65433 2235678899999977 888999999999999876533221 111122222225
Q ss_pred CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc-CCCChHHHHHHHHHHHHHH
Q 009184 393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VCPDPRIVTVCLEGLENIL 452 (541)
Q Consensus 393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~~~~~~~~~~l~~L~~l~ 452 (541)
++..+|..++..|..++.. ..... +++.|...+ +..+++++..++..+..+.
T Consensus 316 ~d~~Ir~~~l~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp SSHHHHHHHHHHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 5666777777777766542 22222 344455555 3335555555555544444
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.46 E-value=1.4e-11 Score=129.79 Aligned_cols=361 Identities=16% Similarity=0.186 Sum_probs=252.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.+..+.+.|.++++.++-.|++++.++.. .+-.+ .+++.+.+++.+++ +.+|..|+.++..+....|+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~-----~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAE-----PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHH-----HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhh-----HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 55667777888899999999999988752 12222 25888899999988 99999999999999986665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
. . .++.+.+++.++++.++..|+.++..+ ...+.....+ -...+..+.+.+ ...++-.+..++.++..++...
T Consensus 151 ~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 151 D---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp G---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSS
T ss_pred H---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCC
Confidence 2 2 578999999989999999999999999 2222110011 111344444444 6778888999999999887654
Q ss_pred CCCChhhh--hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 234 PQPPFDQV--SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 234 ~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
+ ... ..+++.+..++++.++.|...++.++..+..... .-..+++.+..++.++++.++..++.+|..
T Consensus 224 ~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 224 P----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQ 293 (526)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred h----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHH
Confidence 2 222 5688889999998899999999999998875433 223678899999999999999999999999
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL 390 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l 390 (541)
++...+.. + . .....+..+. ++ +..+|..++.+|..++. +..+. .+++.|...+
T Consensus 294 l~~~~~~~---v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~----------------~Il~eL~~~l 348 (526)
T PF01602_consen 294 LAQSNPPA---V-F--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVK----------------EILDELLKYL 348 (526)
T ss_dssp HCCHCHHH---H-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHH----------------HHHHHHHHHH
T ss_pred hhcccchh---h-h--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchh----------------hHHHHHHHHH
Confidence 98766221 2 2 2233344555 55 89999999999999985 44454 2677888888
Q ss_pred h-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchh
Q 009184 391 E-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF 469 (541)
Q Consensus 391 ~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 469 (541)
. ..+.+++..++.+++.++....+ ... -+++.+++++...+..+...+...+..++...+..+
T Consensus 349 ~~~~d~~~~~~~i~~I~~la~~~~~-~~~-----~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~---------- 412 (526)
T PF01602_consen 349 SELSDPDFRRELIKAIGDLAEKFPP-DAE-----WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR---------- 412 (526)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHHGS-SHH-----HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----------
T ss_pred HhccchhhhhhHHHHHHHHHhccCc-hHH-----HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh----------
Confidence 4 44888999999999988753211 111 246777888877777777777777777775543321
Q ss_pred hhHhhhcchHHHHH-HHhcCCCHHHHHHHHHHHHHhCCC
Q 009184 470 TQMIDDAEGLEKIE-SLQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 470 ~~~i~~~~~~~~l~-~L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
.. .+..+. .+....++++...+.+++.+|-..
T Consensus 413 ~~------~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 413 EK------ILKKLIELLEDISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp HH------HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred HH------HHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence 11 123333 334467788888888888888653
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.45 E-value=5.8e-11 Score=131.07 Aligned_cols=278 Identities=18% Similarity=0.210 Sum_probs=217.2
Q ss_pred hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 009184 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (541)
Q Consensus 114 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 193 (541)
....++.|+..|.+++ +.+|..|+..|+.+.. .++++.|...|.++++.+|..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 3456789999999888 9999999999998753 2457889999999999999999999988853222
Q ss_pred HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 009184 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (541)
Q Consensus 194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 273 (541)
..+.+...| .++++.++..++.+|..+.... ...++..|.++|+.++..++++|..+..
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 124566777 6688999999999888764221 2456778899999999999999987521
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (541)
Q Consensus 274 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (541)
.+.|..++.++++.+|..++.+|+.+..... ..++.|..++.+. ++.+|..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 1346678999999999999999998865322 2367788999888 8999999999999
Q ss_pred HHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184 354 NITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 433 (541)
Q Consensus 354 nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 433 (541)
++... +. +++.++..|.++++.||..|+++|..+-. ...++.|..+|
T Consensus 801 ~~g~~-~~--------------------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L 847 (897)
T PRK13800 801 ELGCP-PD--------------------DVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEAL 847 (897)
T ss_pred hcCCc-ch--------------------hHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHh
Confidence 98542 11 22457788888999999999999997743 12568999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009184 434 VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 503 (541)
Q Consensus 434 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~ 503 (541)
+++++.|+..+..+|..+ ...+ .....|....++++.+|+..|...|+.
T Consensus 848 ~D~~~~VR~~A~~aL~~~-~~~~--------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRW-PGDP--------------------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred cCCCHHHHHHHHHHHhcc-CCCH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999999999999999885 1111 113567778889999999999888753
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.43 E-value=3.4e-12 Score=105.66 Aligned_cols=117 Identities=33% Similarity=0.503 Sum_probs=109.0
Q ss_pred HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (541)
+++.|+++.++.+|.++++.++..++++|++++...+.....+++.|+++.++.+|.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56789999999999999999999999999999998888888888899999999999998 99999999999999999877
Q ss_pred HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhc
Q 009184 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 409 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 409 (541)
.... .+.+.|+++.|++.+...+.+++..++|+|.+++
T Consensus 82 ~~~~-----------~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKL-----------IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHH-----------HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7676 7788999999999999999999999999999986
No 40
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.42 E-value=1.6e-10 Score=114.83 Aligned_cols=366 Identities=17% Similarity=0.167 Sum_probs=256.5
Q ss_pred CCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH
Q 009184 127 REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV 204 (541)
Q Consensus 127 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~ 204 (541)
+.+ |+....|..-..|.+.+.+.....+++.|+++.|+.+++. +..+...+.+.+++..+.......+.+++.+.++
T Consensus 20 ~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 20 HLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred cCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 344 7777888889999999999998899999999999999876 4566766677777777766666777888888999
Q ss_pred HHHHhhcCCCh-hhHHHHHHHHHHhhhcCCCCCChh---hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH
Q 009184 205 PLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFD---QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (541)
Q Consensus 205 ~Ll~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~ 280 (541)
.++.++ ..+| ..++...+.++.++....+..+.. ....+++.+..++..+...+...-+....+++... +....
T Consensus 99 ~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~I 176 (678)
T KOG1293|consen 99 KLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLI 176 (678)
T ss_pred HHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhhe
Confidence 999999 5555 888999999999998877444333 33556666655555344445555555556666554 34455
Q ss_pred HHHhCcHHHHHHhhCCCChhhHHHHHHHHh---HhhcCCchhHHHH----HhcCchH--HHHHhhcCCCchhHHHHHHHH
Q 009184 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVG---NIVTGDDMQTQCV----IEYQALP--CLLNLLSGNYKKSIKKEACWT 351 (541)
Q Consensus 281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~---nl~~~~~~~~~~~----~~~~~l~--~L~~lL~~~~~~~v~~~a~~~ 351 (541)
+.++|+.+.+.-++...+...|..|+.+++ ++...++.....+ .+.|+.+ .+.++++++ +...+-.++.+
T Consensus 177 l~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~-~~s~~l~sl~c 255 (678)
T KOG1293|consen 177 LCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP-DFSERLRSLEC 255 (678)
T ss_pred eccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC-CccHHHHHHHH
Confidence 788899999988888888889999999999 7777776554333 2445554 334444444 44444445544
Q ss_pred HHHHhcCChH----------------------------------------------------------------------
Q 009184 352 VSNITAGNRE---------------------------------------------------------------------- 361 (541)
Q Consensus 352 L~nl~~~~~~---------------------------------------------------------------------- 361 (541)
+.++.+++..
T Consensus 256 l~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf 335 (678)
T KOG1293|consen 256 LVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLF 335 (678)
T ss_pred HHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHH
Confidence 4444432200
Q ss_pred ----------HHHHHHhhc-------------------------------------hh------------hHHHHH----
Q 009184 362 ----------QIQVIMHVH-------------------------------------AF------------SIIAVI---- 378 (541)
Q Consensus 362 ----------~~~~~~~~~-------------------------------------~~------------~~~~l~---- 378 (541)
....+..++ .| +-...+
T Consensus 336 ~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~ 415 (678)
T KOG1293|consen 336 ICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL 415 (678)
T ss_pred HHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 000000000 00 001112
Q ss_pred -hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184 379 -EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 379 -~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~ 457 (541)
..++..+|++++..++..|+..++.+|+|++..- ......++..|+|+.+.+++...++.++...+++|++++-..+.
T Consensus 416 ~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 416 KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 3467899999999999999999999999998742 24556778999999999999999999999999999999865544
Q ss_pred hhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184 458 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
... ...++. =+...|..+.+.++..|.+.+.+++..+.-.
T Consensus 495 ~~k-----~~~~~k-----i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 495 EEK-----FQLLAK-----IPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHH-----HHHHHH-----hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 321 111222 2346788899999999999999999887643
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=99.42 E-value=1.7e-09 Score=114.43 Aligned_cols=343 Identities=16% Similarity=0.088 Sum_probs=227.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.+..+.+.|.+.+...+..|++.+......+ .+. +.+++..++++.+.+ ..++.-+...+.+++...++..-
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHH
Confidence 4567788888888888888887766655443 332 235777888898888 99999999999999886666543
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
. +++.|.+=+.++++.+|..|++++++|-. + .+++. .+.++.+.+ .+.++-|++.|+.++..+.+..
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~----~i~e~-l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--S----SVLEY-TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--H----HHHHH-HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 2 36788888999999999999999998742 2 12222 456677777 7889999999999999998765
Q ss_pred CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 009184 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (541)
Q Consensus 234 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 313 (541)
|. .....+.++.|..+|...|+.|...|+.+|..+....+.... ...+.+..++..+..-++-.+...+.+|....
T Consensus 172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR 247 (746)
T ss_pred cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence 42 223457888999999999999999999999999865544332 33456777888887666667777787775543
Q ss_pred cCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHh----------hc--hhhH-----H
Q 009184 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMH----------VH--AFSI-----I 375 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~----------~~--~~~~-----~ 375 (541)
..++... ..++..+...|++. ++.|..+|+.++.++... .++.+..+.. .. ...| +
T Consensus 248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I 321 (746)
T PTZ00429 248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNI 321 (746)
T ss_pred CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHH
Confidence 2222221 24677888889998 899999999999988753 2332221100 00 0011 0
Q ss_pred HHH---hcCcHHHHHHHh---hcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHH
Q 009184 376 AVI---EANIIGPLVALL---ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 449 (541)
Q Consensus 376 ~l~---~~~~l~~L~~~l---~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~ 449 (541)
..+ ...++..-++.+ .++...++...+..|..++...+.. . +++-|..+....|.+++..++.++.
T Consensus 322 ~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~---~-----IL~EL~eYa~d~D~ef~r~aIrAIg 393 (746)
T PTZ00429 322 HALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAP---E-----ILKELAEYASGVDMVFVVEVVRAIA 393 (746)
T ss_pred HHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHH---H-----HHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 000 011111111111 1122345666666666665432221 1 3456666666777778888888887
Q ss_pred HHHHhh
Q 009184 450 NILKVG 455 (541)
Q Consensus 450 ~l~~~~ 455 (541)
.+....
T Consensus 394 ~lA~k~ 399 (746)
T PTZ00429 394 SLAIKV 399 (746)
T ss_pred HHHHhC
Confidence 776543
No 42
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.41 E-value=6.3e-14 Score=108.72 Aligned_cols=91 Identities=43% Similarity=0.627 Sum_probs=60.6
Q ss_pred CCCCchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCc--cCCCCCc-hhhhcCCHHHHHH
Q 009184 5 PNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA--NDVNAPG-TAKKLENLPVMVA 80 (541)
Q Consensus 5 ~~~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~l~~ 80 (541)
++..++.|++.||+ |+|++|+|+||++..++|||+||++.|.|||++........+ .+..... .......+|.++.
T Consensus 2 ~~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 81 (97)
T PF01749_consen 2 SSKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVA 81 (97)
T ss_dssp -----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHH
T ss_pred CccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHH
Confidence 34467899999999 699999999999999999999999999999998654333211 1111111 2222346789999
Q ss_pred hhcCCCHHHHHHHHH
Q 009184 81 GVWSNDSGVQYECTT 95 (541)
Q Consensus 81 ~L~s~~~~~~~~a~~ 95 (541)
.+.|+|+..++.|..
T Consensus 82 ~v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 82 GVNSDDPEVQLEATQ 96 (97)
T ss_dssp HHTSSCHHHHHHHHH
T ss_pred hcCCCCHHHHHHhhC
Confidence 999999999999875
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.34 E-value=1.2e-09 Score=107.36 Aligned_cols=323 Identities=12% Similarity=0.092 Sum_probs=223.7
Q ss_pred CHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHh-----cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC
Q 009184 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIR-----SGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (541)
Q Consensus 74 ~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~-----~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~ 147 (541)
....++..+.. ..+++....+..+..++... +.....+.+ ......++.+|..++ .-++..|+.+|+.+.+.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 34566676664 55777888888888888763 333444544 356778888998877 89999999999999875
Q ss_pred ChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC-hhhHHHHHHHH
Q 009184 148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWT 225 (541)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~-~~~~~~~a~~~ 225 (541)
.+.........-..+.|...+.+ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +..++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 44321111111123445555554 346778888999999987776 8998888889999999996544 67889999999
Q ss_pred HHhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhhCC--
Q 009184 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMH-- 296 (541)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~------~~~~~~~~~~g~l~~L~~lL~~-- 296 (541)
++-|+...+........++++.++.+++.. .+++..-++.++.|+...+ ......+++.|+++.+-.+...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 999998865444444578999999999854 6778888999999998643 1233456666765544444322
Q ss_pred CChhhHHHH-------HHHHhHhhcC--------------Cc---------hhHHHHHh--cCchHHHHHhhcCCCchhH
Q 009184 297 PSPSVLIPA-------LRTVGNIVTG--------------DD---------MQTQCVIE--YQALPCLLNLLSGNYKKSI 344 (541)
Q Consensus 297 ~~~~v~~~a-------l~~L~nl~~~--------------~~---------~~~~~~~~--~~~l~~L~~lL~~~~~~~v 344 (541)
.++++..-. -..+..+++. ++ ++...+-+ ..++..|+.+|..+.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 233322111 0111111110 11 11122222 3467889999965558888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
..-||.=++.++...|.... .+-+.|+=..+++++.+++++|+.+|+.|+..+..
T Consensus 371 laVAc~Dige~vr~~P~gr~-----------i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKD-----------VVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eehhhhhHHHHHHHCccHHH-----------HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 89999999999998777776 66678999999999999999999999999998754
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.31 E-value=1.8e-09 Score=106.13 Aligned_cols=353 Identities=14% Similarity=0.150 Sum_probs=230.3
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC-----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH-----GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 190 (541)
..+..++.+++....+++....+..+..+....+.....+.+. .....++.+|..++.-+...++..|..++..+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4577788888776668888888888888888878777777654 45677888998899999999999999998655
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHH
Q 009184 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALS 268 (541)
Q Consensus 191 ~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~ 268 (541)
+.........-.+.-+...+....+...+..++.++..|.+.++.+......++++.|+.+|+.. +.+++..++.++.
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 43211111111233445555333457778888899999998876665454566899999999753 4578888888888
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCc------hhHHHHHhcCchHHHHHhhcCCC-
Q 009184 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY- 340 (541)
Q Consensus 269 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~- 340 (541)
-++-... ........++++.++.+++. ..+++..-++.++.|+...+. .....+++.|+++.+-.+.....
T Consensus 213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 8875544 33445667999999999965 568899999999999998531 23334566676665544443321
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHhhchhh-HHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHH
Q 009184 341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFS-IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 419 (541)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 419 (541)
|+++.... ..|..... +.++ ....|+ |-.=++.|-+ .. +|--+.+.-|. +....
T Consensus 292 DedL~edl-~~L~e~L~---~~~k---~ltsfD~Y~~El~sg~L-------~W-Sp~H~se~FW~----------EN~~k 346 (429)
T cd00256 292 DEDLTDDL-KFLTEELK---NSVQ---DLSSFDEYKSELRSGRL-------HW-SPVHKSEKFWR----------ENADR 346 (429)
T ss_pred cHHHHHHH-HHHHHHHH---HHHH---HcCCHHHHHHHHhcCCc-------cC-CCCCCCchHHH----------HHHHH
Confidence 44443322 22222211 0011 001110 0011111221 11 11111111111 22233
Q ss_pred HHHc--CChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHH
Q 009184 420 LVIQ--GCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK 496 (541)
Q Consensus 420 l~~~--~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~ 496 (541)
+-+. .+++.|+.+|+ +.|+.+...|+.=|+.+++..+.. +..+++.|+.+.+-+|.+|+|++|+..
T Consensus 347 f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-----------r~i~~~lg~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 347 LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-----------KDVVEQLGGKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-----------HHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 3332 35788999984 567888888888899998877553 557788999999999999999999999
Q ss_pred HHHHHHHhC
Q 009184 497 SVKLLETYW 505 (541)
Q Consensus 497 a~~il~~~~ 505 (541)
|..-+++++
T Consensus 416 AL~avQklm 424 (429)
T cd00256 416 ALLAVQKLM 424 (429)
T ss_pred HHHHHHHHH
Confidence 988888764
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.4e-10 Score=111.23 Aligned_cols=320 Identities=18% Similarity=0.221 Sum_probs=210.9
Q ss_pred CCHHHHHHhhc----CCCH-HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcC-CCcHHHHHHHHHHHHHHhc
Q 009184 73 ENLPVMVAGVW----SNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 73 ~~l~~l~~~L~----s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~-~~~~~i~~~a~~~L~~l~~ 146 (541)
+.+|.++..|. .+.+ .++..++.++..++..- .|..-.--...++..+++-... +.+..+|..|+.+|.|-..
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 45666666554 3334 37788888888886543 2221111124456666665543 3347899999999998443
Q ss_pred CCh-hHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184 147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (541)
Q Consensus 147 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~ 225 (541)
-.. ......-.+-++...+..-++++.+++..|+.||..|..---++...-+....+..-+..+ +++++++...+...
T Consensus 204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEF 282 (859)
T KOG1241|consen 204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEF 282 (859)
T ss_pred HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHH
Confidence 111 1111111233556677777889999999999999998754333333323333444555566 68899999999999
Q ss_pred HHhhhcCCCC-------------CC--h----hhhhchHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHHHH
Q 009184 226 LSNFCRGKPQ-------------PP--F----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQ 279 (541)
Q Consensus 226 L~~l~~~~~~-------------~~--~----~~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~l~~~~~~~~~ 279 (541)
.+++|..... ++ . .....++|.|+++|... +..+...|-.||.-++....+.
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-- 360 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-- 360 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc--
Confidence 9998865311 10 1 12257788888888642 2334555555665554332211
Q ss_pred HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (541)
Q Consensus 280 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (541)
++. .+++.+-.-+++++|.-+..|..++|.+..+.+.....-+-.++++.++.++.++ .-.++..+.|+++.++...
T Consensus 361 -Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 361 -IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred -chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhc
Confidence 222 4555555567889999999999999999999887776677789999999999977 8889999999999999865
Q ss_pred hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
++.+.- ...-...++.++.-|. +.|++...++|++.+++.
T Consensus 438 ~e~~~n----------~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 438 PEAIIN----------QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhhccc----------HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 543320 2223355666666555 468999999999999984
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.9e-09 Score=104.71 Aligned_cols=259 Identities=18% Similarity=0.171 Sum_probs=199.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHH-hcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 118 VPRFVEFLLREDYPQLQFEAAWALTNI-ASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
+..|++-|+...++..|.+|+.-|+.+ +.++.+....+--..++|.|+.+|+. .+.++.-+|+++|.++|.--|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 556666666663488888888777754 44666665555445678999999988 6799999999999999988887788
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-C
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-T 274 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~ 274 (541)
.+++.++|+.|+..|..-...++.+.++.+|-.+++..+. .....|.+...+..|.--...++..|+.+..|+|.. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~--AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK--AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8889999999999886777889999999999999987543 334577888888877666777889999999999854 3
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC---chhHHHHHhcCchHHHHHhhcCCC---chhHHHHH
Q 009184 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD---DMQTQCVIEYQALPCLLNLLSGNY---KKSIKKEA 348 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~---~~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~a 348 (541)
++....+.+ .+|.|..+|++.+.+..+.++-++..++.+. +...+.+...+++....+++.-.+ +..+..-.
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 344455554 7999999999999999999999999998654 345567778899999999887652 23455666
Q ss_pred HHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh
Q 009184 349 CWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE 391 (541)
Q Consensus 349 ~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~ 391 (541)
+..|+-++++++.... .+...++...|.++|.
T Consensus 405 Irmls~msS~~pl~~~-----------tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFR-----------TLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHHHHHccCChHHHH-----------HHHHhhHHHHHHHHHh
Confidence 7788888888787776 6666666666666654
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=6.3e-09 Score=105.07 Aligned_cols=358 Identities=14% Similarity=0.067 Sum_probs=226.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 009184 80 AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (541)
Q Consensus 80 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g 159 (541)
..|.+..|...-.|..++..++..+ -|+.++ .++++.|+.....+....++..++.+|+.+|.+-....-.-..+.
T Consensus 97 ~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n~w---p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~ 172 (859)
T KOG1241|consen 97 RTLGSPEPRRPSSAAQCVAAIACIE-LPQNQW---PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSND 172 (859)
T ss_pred HHcCCCCCCccchHHHHHHHHHHhh-CchhhC---HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhH
Confidence 3555566666667777777777664 444333 456777777777666345899999999999985432211112245
Q ss_pred ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CC
Q 009184 160 AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQ 235 (541)
Q Consensus 160 ~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g-~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~ 235 (541)
++..+++-... ++..+|-.|+.+|.|--......-..-.+.+ ++...+..- ++++.+++..+..+|..+..-. ..
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY~~ 251 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYYEF 251 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776655 7789999999999875422110000001111 222333333 6789999999999999887543 11
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHH---------------HHHHH---HhCcHHHHHHhhCC-
Q 009184 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK---------------IQAVI---EAGVFPRLAEFLMH- 296 (541)
Q Consensus 236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~---------------~~~~~---~~g~l~~L~~lL~~- 296 (541)
...-....+++.-+.-+.+++++|...+...-+++++..-+. ...+. -.+++|.|+++|..
T Consensus 252 m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kq 331 (859)
T KOG1241|consen 252 MEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQ 331 (859)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhC
Confidence 111122334555556677889999888887777777432210 00011 11567888888833
Q ss_pred ------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 009184 297 ------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370 (541)
Q Consensus 297 ------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 370 (541)
++|.....|-.||.-++....... +. -+++.+-.-++++ +.+-|..|+.+++.+..+......
T Consensus 332 de~~d~DdWnp~kAAg~CL~l~A~~~~D~I---v~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~L------ 400 (859)
T KOG1241|consen 332 DEDDDDDDWNPAKAAGVCLMLFAQCVGDDI---VP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKL------ 400 (859)
T ss_pred CCCcccccCcHHHHHHHHHHHHHHHhcccc---hh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhh------
Confidence 357788888888887775443221 11 3455555666777 888999999999999986444433
Q ss_pred hhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHH
Q 009184 371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 450 (541)
Q Consensus 371 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~ 450 (541)
.-+-.+.+|.++.++.++...++..+.|+|+.++............-.+.+..+..=|. +.|.+...++|++..
T Consensus 401 -----t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~ 474 (859)
T KOG1241|consen 401 -----TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFIS 474 (859)
T ss_pred -----hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHH
Confidence 33344899999999998888999999999999987532111111112233444444332 467889999999999
Q ss_pred HHHhhHhhh
Q 009184 451 ILKVGEAEK 459 (541)
Q Consensus 451 l~~~~~~~~ 459 (541)
|.+...+..
T Consensus 475 Laea~~eA~ 483 (859)
T KOG1241|consen 475 LAEAAYEAA 483 (859)
T ss_pred HHHHHHHhc
Confidence 997655543
No 48
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=8.3e-08 Score=96.52 Aligned_cols=258 Identities=16% Similarity=0.147 Sum_probs=184.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
..+.++.+|.+.-|-++..|+-.+.++.-.. ++..+ ..+|.|++-|.+++ |.++..|+.+++.++..+|.+.-
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc
Confidence 4577888899999999999999998887543 22232 25999999999999 99999999999999998887653
Q ss_pred HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh--hh
Q 009184 154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN--FC 230 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~--l~ 230 (541)
.+-|.+.++|.. .+.=+....+..+++++--.|..... .+++|.+++....-.++...+..++.. ++
T Consensus 218 -----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 218 -----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred -----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 245888888755 33334455788888888766654444 688999999554445555555554432 33
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (541)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 310 (541)
.+. ........-+++.|-.++.++|+.++.-.+.+++.+....+...+. --+.++++|.+.++++|..|+..+-
T Consensus 288 ~g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 288 SGM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred cCC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence 321 2334445677888888999999999999999999999777755442 3467889999999999999999998
Q ss_pred HhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (541)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (541)
-++... +.. .++..|+..+........|.+.+.-+..+|+.+..
T Consensus 362 gmVskk--Nl~-----eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 362 GMVSKK--NLM-----EIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred HHhhhh--hHH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 887532 221 23455665555442446777777777777764333
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2e-07 Score=94.81 Aligned_cols=324 Identities=18% Similarity=0.184 Sum_probs=238.0
Q ss_pred CCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCCh-
Q 009184 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS- 149 (541)
Q Consensus 73 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~- 149 (541)
|.++.+++.+.+. -.+.|..|++.|..+... ....+. ..+++.|++.|+.+. ++++...++..+.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 6889999988864 478899999999888643 333443 445888999988653 58999999999999887442
Q ss_pred -----h----------HHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhc-CChHHHHHhhc
Q 009184 150 -----E----------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQ-GGLVPLLAQLN 211 (541)
Q Consensus 150 -----~----------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~-g~i~~Ll~~l~ 211 (541)
+ ..+.++ ..+.|..|+..+...+-.||..++..|.++.... ++.++.++.. .+|..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 1 122333 4688999999999999999999999999987544 4577776643 3689999999
Q ss_pred CCChhhHHHHHHHHHHhhhcCCCCCCh-hhhhchHHHHHHhhccC---Ch-hHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009184 212 GQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSN---DD-EVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (541)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~---d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 286 (541)
.+..+.++..++..|+.+.++.+.... .....++..|..++... |. -|..+|+..+.+|..++..+.+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 777888999999999999999865543 44578889999998753 33 57899999999999998888898999999
Q ss_pred HHHHHHhhCC---CC-----hh-----hHHHHHHHHhHhhcCCc-----hhH-HHHHhcCchHHHHHhhcCCC-chhHHH
Q 009184 287 FPRLAEFLMH---PS-----PS-----VLIPALRTVGNIVTGDD-----MQT-QCVIEYQALPCLLNLLSGNY-KKSIKK 346 (541)
Q Consensus 287 l~~L~~lL~~---~~-----~~-----v~~~al~~L~nl~~~~~-----~~~-~~~~~~~~l~~L~~lL~~~~-~~~v~~ 346 (541)
+++|.++|.. .+ |. -...++.++..++.-.. .+. ..+..++++..|..++-++. ..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988843 12 22 23346666666665221 122 35567889999999888762 568999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc---------CcHHHHHHHh-h-cCchhHHHHHHHHHHHhccCCC
Q 009184 347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA---------NIIGPLVALL-E-NAEFDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~---------~~l~~L~~~l-~-~~~~~v~~~a~~aL~nl~~~~~ 413 (541)
++..+++++.+++..... .+.+. ..+-.|+..+ . ...+..|..+.+++..+.....
T Consensus 336 esiitvAevVRgn~~nQ~-----------~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQD-----------EFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHHHHHHHHHHhchHHHH-----------HHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 999999999998776665 33321 1122222222 2 2357889999999988887543
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.08 E-value=1.6e-08 Score=95.96 Aligned_cols=279 Identities=14% Similarity=0.093 Sum_probs=202.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (541)
++.++..|..++.-+...+.+.+.++++.+ +.......-.-....|-..++++.+++...-|++||..+.. -++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence 678888999999888888999999988764 22211100011233444556664547888889999999998 5889999
Q ss_pred HHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 155 VIDHGAVPIFVKLLY-S-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 155 i~~~g~i~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
++...++..++..+. + .+-.++-+.+.|++-+.-..+ ..+.+...+.++.|..++..+..+.+.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998888999998883 3 568899999999999987766 4466678889999999998888999999999999999988
Q ss_pred CCCCC------hhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHh-------ccC---------------Ch------
Q 009184 233 KPQPP------FDQVSPALPALAHLIH---SNDDEVLTDACWALSYL-------SDG---------------TN------ 275 (541)
Q Consensus 233 ~~~~~------~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l-------~~~---------------~~------ 275 (541)
.+... ..+...-++..++.|. .+|+++..+.-..-..| +.. +.
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 64322 1222333444445554 24666544432222222 110 00
Q ss_pred --HHHHHHHHh--CcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHH
Q 009184 276 --DKIQAVIEA--GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350 (541)
Q Consensus 276 --~~~~~~~~~--g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 350 (541)
++...+.+. .++..|+.+|... ++.+..-||.=||.++...++....+.+.|+=..++++|.++ +++||.+|..
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 112223222 4678899999665 588899999999999999999888888999999999999999 9999999999
Q ss_pred HHHHHhc
Q 009184 351 TVSNITA 357 (541)
Q Consensus 351 ~L~nl~~ 357 (541)
++-.+..
T Consensus 432 avQ~lm~ 438 (442)
T KOG2759|consen 432 AVQKLMV 438 (442)
T ss_pred HHHHHHh
Confidence 8877654
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.3e-08 Score=91.96 Aligned_cols=187 Identities=21% Similarity=0.251 Sum_probs=157.3
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH
Q 009184 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (541)
Q Consensus 255 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (541)
.+.+-+..++.-|.+++..-+ +...++..|++..++..+.+++..+|..|+++||.++.+++.....+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 456667888888888775433 4566888899999999999999999999999999999999998899999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--CchhHHHHHHHHHHHhccCC
Q 009184 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~ 412 (541)
.+.++.+..+|..|.++++.+.++++.... .+...+....|...+.+ .+...+..++..+..++...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~-----------~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQD-----------EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHH-----------HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 999876778889999999999999999888 89988999999999999 57889999999999998753
Q ss_pred CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 413 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 413 ~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
......+...+.-..+..+..+.+.++...++.++..++..
T Consensus 243 -~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 243 -KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred -hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 33334445567777778888888888888888777766654
No 52
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.03 E-value=1.1e-07 Score=90.28 Aligned_cols=322 Identities=12% Similarity=0.086 Sum_probs=223.5
Q ss_pred CHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHH-------hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 009184 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (541)
Q Consensus 74 ~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i-------~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~ 145 (541)
.+..++..+.. ..++...-++..+-.+++.. +....+. ..-.-..++.+|...+ +-+...+.++++.++
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 45677777764 34566677888888888763 2222111 1234677888898888 788888999999988
Q ss_pred cCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHH
Q 009184 146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT 223 (541)
Q Consensus 146 ~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l-~~~~~~~~~~~a~ 223 (541)
.-.+......--.=....|...+.+ .+.+....|++||..+...++ +|..+....++..++..+ ....+..++...+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 7433221110000012334444555 667777888999999987766 888888887888888888 4556788999999
Q ss_pred HHHHhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHhCcHHHHHHhhCC
Q 009184 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLMH 296 (541)
Q Consensus 224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~------~~~~~~~~~g~l~~L~~lL~~ 296 (541)
.+++-|+.+.+........+.++.|..+++.. .+.|..-++.++.|++...+ +....++..++.+.+-.+...
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999998875555555678999999999854 67788889999999987664 223445555655555444422
Q ss_pred --CChhhHHHHHH-------HHhHhhcC--------------Cc---------hhHHHHH--hcCchHHHHHhhcCCCch
Q 009184 297 --PSPSVLIPALR-------TVGNIVTG--------------DD---------MQTQCVI--EYQALPCLLNLLSGNYKK 342 (541)
Q Consensus 297 --~~~~v~~~al~-------~L~nl~~~--------------~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~ 342 (541)
.++++....-. -...+++. ++ ++...+. +..++..|+.+|+.+.+|
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 34433322111 11112211 11 1122222 235789999999988679
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
.+-.-||.-++...+..|+... .+.+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~-----------vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKA-----------VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhH-----------HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9999999999999999899887 77789999999999999999999999999988865
No 53
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.02 E-value=6.9e-08 Score=94.59 Aligned_cols=361 Identities=13% Similarity=0.064 Sum_probs=220.5
Q ss_pred CCHHHHHHhhc----CCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcC-CHHHH-HHhhcCCCcHHHHHHHHHHHHHHh
Q 009184 73 ENLPVMVAGVW----SND-SGVQYECTTQFRKLLSIERSPPIEEVIRSG-VVPRF-VEFLLREDYPQLQFEAAWALTNIA 145 (541)
Q Consensus 73 ~~l~~l~~~L~----s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g-~i~~L-v~lL~~~~~~~i~~~a~~~L~~l~ 145 (541)
+.+|.+.+.+. .+. ...+.+++..+..++... .|-..+-.++ ++-.+ ..-++.+.+..+|..|+.+|.+=+
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl 206 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL 206 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 35555555443 333 457888899998887553 3322222222 23333 334555555789999999988722
Q ss_pred cCChhHHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHH
Q 009184 146 SGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221 (541)
Q Consensus 146 ~~~~~~~~~i~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~ 221 (541)
. ..+..+.. +-++...+..-+.++.+++..+..||..|..---.+.+..++.-......+.+ ++++.++...
T Consensus 207 ~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~q 282 (858)
T COG5215 207 M---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQ 282 (858)
T ss_pred H---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Confidence 1 01111111 12345556666779999999999999988644333444444443333344445 7889999999
Q ss_pred HHHHHHhhhcCCCCCCh-----------------hhhhchHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHH
Q 009184 222 ATWTLSNFCRGKPQPPF-----------------DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDK 277 (541)
Q Consensus 222 a~~~L~~l~~~~~~~~~-----------------~~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~l~~~~~~~ 277 (541)
+....+.+|........ .....++|.|+++|... |..+...|..||.-.+....+
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd- 361 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD- 361 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence 99999888876421110 11356899999999642 344555666666554433222
Q ss_pred HHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 278 ~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
.+.+ .++..+-.-+.+++|.-+..|+.++|.+..+..+.....+-...+|.+..++.++ .--++..++|+++.|+.
T Consensus 362 --~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad 437 (858)
T COG5215 362 --KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD 437 (858)
T ss_pred --HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence 1222 2555556667889999999999999999999887665556678899999999877 88899999999999987
Q ss_pred CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh---cCchhHHHHHHHHHHHhccCCCHHH---HHHHHH--cCChHHH
Q 009184 358 GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGGTHEQ---IKFLVI--QGCIKPL 429 (541)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~aL~nl~~~~~~~~---~~~l~~--~~~i~~L 429 (541)
+-+..+. . .|-++..+.... .+.+.+...++|...|++..-.+.. -..+.. ..++..|
T Consensus 438 ~va~~i~-----------p---~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 438 HVAMIIS-----------P---CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred HHHHhcC-----------c---cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 5444333 2 122222222221 1467889999999999986421111 111111 0122233
Q ss_pred hhhcC--CCChHHHHHHHHHHHHHHHhhHhh
Q 009184 430 CDLLV--CPDPRIVTVCLEGLENILKVGEAE 458 (541)
Q Consensus 430 ~~lL~--~~~~~~~~~~l~~L~~l~~~~~~~ 458 (541)
+.--+ .++...+.....+|..++.+.++.
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~ 534 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDA 534 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchh
Confidence 32211 344566777777887777766553
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3e-08 Score=93.04 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=153.5
Q ss_pred cHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184 130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (541)
Q Consensus 130 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~ 209 (541)
+++-+..|+.-|..++. +-++...++..|++..++.++.+++..+|+.|+|+|+.++...|..+..+++.|++..|+..
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 47888888888888887 57778888899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHhhhcCCCC-CChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009184 210 LNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (541)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 286 (541)
+..+.+..++..|+.+++.+.++.+. .......++...|...+.+ .+...+..++..+.++..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 98777888899999999999999843 3444446669999999998 46677888999999998766555555555577
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184 287 FPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 287 l~~L~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
...+..+....+..+.+.++.++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6777777777788888888877765554
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.4e-06 Score=88.91 Aligned_cols=324 Identities=16% Similarity=0.163 Sum_probs=237.9
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP--- 191 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~--- 191 (541)
.|+.|++-+.++.-.+-|..|++.|-.++. ++|..+... +++.|++.|+. .++++...++.++.++.....
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 488888888776657889999999999886 566666655 48999999987 679999999999999985442
Q ss_pred ---h----------hHHH-HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh---hhhchHHHHHHhhcc
Q 009184 192 ---R----------CRDL-VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD---QVSPALPALAHLIHS 254 (541)
Q Consensus 192 ---~----------~r~~-i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~lL~~ 254 (541)
. +.+. +...+.|..++..+ ...|-.++..+...+.++....|..-.. ....++..++.+|..
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 1122 23456677777777 7778999999999999999887544322 236688899999998
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC----ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchH
Q 009184 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (541)
Q Consensus 255 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 330 (541)
..+.|+-+++..|+.++..++...+.+.=..++.+|..++... ..-|..-|+..|.|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8888999999999999988887666666668999999999653 235788899999999999888888888999999
Q ss_pred HHHHhhcCCC--c--------hhH--HHHHHHHHHHHhc-CChH----HH-HHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 331 CLLNLLSGNY--K--------KSI--KKEACWTVSNITA-GNRE----QI-QVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 331 ~L~~lL~~~~--~--------~~v--~~~a~~~L~nl~~-~~~~----~~-~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
.|.++|.... + .++ ...+..++..+.. +++. +. + .+...+++..|+.++.+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk-----------~l~ss~ll~~Lc~il~~ 326 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQK-----------ALVSSHLLDVLCTILMH 326 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-----------HHHHcchHHHHHHHHcC
Confidence 9998875321 1 111 2455566666665 3222 22 3 56688999999999988
Q ss_pred C--chhHHHHHHHHHHHhccCCCHHHHHHHHHcCC----------hHHHhhhcCCC-ChHHHHHHHHHHHHHHHhhHh
Q 009184 393 A--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGC----------IKPLCDLLVCP-DPRIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 393 ~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~----------i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~~~~ 457 (541)
+ ..+|+.+++-++.+.+.+. ......+.+..+ +-.++.+..+. ....+.+++.++..++..+..
T Consensus 327 ~~vp~dIltesiitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~ 403 (970)
T KOG0946|consen 327 PGVPADILTESIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD 403 (970)
T ss_pred CCCcHhHHHHHHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence 6 4789999999999999864 333344443211 12334444443 456788888888887755443
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=2.7e-08 Score=96.60 Aligned_cols=232 Identities=18% Similarity=0.223 Sum_probs=167.2
Q ss_pred HHHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHh------CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184 246 PALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEA------GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (541)
Q Consensus 246 ~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~------g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 317 (541)
..++.+|. +.+++++.+++..+..+....+...+.+... .....+++++..+++.+...|+.+++.+....+
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 33444443 4688999999999999987777666655552 367888889999999999999999999998776
Q ss_pred hhHHHHHhcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh----
Q 009184 318 MQTQCVIEYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL---- 390 (541)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l---- 390 (541)
....... .+.++.++.++.+.. +..++..|+.+|.++.. .+.... .+++.++++.+..++
T Consensus 138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~-----------~f~~~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQ-----------VFWKSNGVSPLFDILRKQA 204 (312)
T ss_dssp T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHH-----------HHHTHHHHHHHHHHHH---
T ss_pred ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHH-----------HHHhcCcHHHHHHHHHhhc
Confidence 5543322 456677777776421 55677899999999986 466666 888999999999999
Q ss_pred --hc-CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHHhhHhhhhcCCCCc
Q 009184 391 --EN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTDV 466 (541)
Q Consensus 391 --~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 466 (541)
.. .+..++-+++.++.-++- +++....+.+.++++.|+++++. ...++++.++.++.|++...++.
T Consensus 205 ~~~~~~~~Ql~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~-------- 274 (312)
T PF03224_consen 205 TNSNSSGIQLQYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS-------- 274 (312)
T ss_dssp ------HHHHHHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT--------
T ss_pred ccCCCCchhHHHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH--------
Confidence 22 357888999999999987 67888888888999999999875 56789999999999999766432
Q ss_pred chhhhHhhhcchHHHHHHHhc--CCCHHHHHHHHHHHH
Q 009184 467 NVFTQMIDDAEGLEKIESLQT--HDNAEIYEKSVKLLE 502 (541)
Q Consensus 467 ~~~~~~i~~~~~~~~l~~L~~--~~~~~i~~~a~~il~ 502 (541)
+...+-.+|++..+..|+. -.|+|+.+--..+-+
T Consensus 275 --~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 275 --NIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp --HHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred --HHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4666777999999999974 489999887766654
No 57
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=7.7e-08 Score=100.36 Aligned_cols=267 Identities=19% Similarity=0.223 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (541)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 166 (541)
-..|+.|........+..+.|+.+ +|..++.|-+ .--+..|+..|+.+..-.+-.....+.-|+.|++++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 356778888888777777777765 6666666654 456788999999999877888888888999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC--hhhHHHHHHHHHHhhhcCCCCCChhh-hhc
Q 009184 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQ-VSP 243 (541)
Q Consensus 167 lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~ 243 (541)
+|+++-.+++-..+.+...|-.-++.|+..+++.++-..++..|..++ +++-+..++.+|+.++++.+..+... ..+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 999999999998888888887666778888887777777777774322 45678888999999999875544433 467
Q ss_pred hHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----Cch
Q 009184 244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDM 318 (541)
Q Consensus 244 ~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~ 318 (541)
++..++..|.++ .+-++..+|.+|+.|-.+.++..-.-...+..+.|+.+|.++-+++|..|+.+||.+..+ .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 788888888775 577899999999999877665444345668899999999999999999999999999875 333
Q ss_pred hHHHH------------HhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184 319 QTQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 319 ~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
+...+ ++..+. -.++.+++.. .+-++.+..-+|+.+..+......
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhH
Confidence 33222 222222 2566777777 899999999999999987666654
No 58
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.92 E-value=5.8e-08 Score=94.31 Aligned_cols=227 Identities=15% Similarity=0.198 Sum_probs=159.8
Q ss_pred hHHHHHhhcCC-ChhhHHHHHHHHHHhhhcCCCCCChhhh-------hchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 203 LVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQV-------SPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 203 i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
...++++|... ++.++.++++..+..++...+....... ......+++++.++|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 44555666555 7899999999999999998764432222 124566777888899999999999999998665
Q ss_pred hHHHHHHHHhCcHHHHHHhhCC----CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh------cCCCchhH
Q 009184 275 NDKIQAVIEAGVFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL------SGNYKKSI 344 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~v 344 (541)
+....... .+.++.++..+.+ ++..++..|+.+++++.. .+..+..+.+.++++.+..++ .+.....+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 54433222 3566777776644 445677889999999985 566677888999999999999 44446789
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHHc
Q 009184 345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ 423 (541)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 423 (541)
+.+++.++.-++. +++... .+.+.++++.|+++++.. ..+|.+-++.++.|++..........|+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~-----------~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~ 282 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAE-----------ELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC 282 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHH-----------HHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHH-----------HHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc
Confidence 9999999999987 466677 888888999999999874 578999999999999987665578888888
Q ss_pred CChHHHhhhcC--CCChHHHHH
Q 009184 424 GCIKPLCDLLV--CPDPRIVTV 443 (541)
Q Consensus 424 ~~i~~L~~lL~--~~~~~~~~~ 443 (541)
|+++.+..+.. ..|+++..-
T Consensus 283 ~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 283 GLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp -HHHHHHHHHSS--SSHHHHHH
T ss_pred cHHHHHHHHhcCCCCCHHHHHH
Confidence 88877777764 367777654
No 59
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.92 E-value=3.2e-07 Score=92.55 Aligned_cols=386 Identities=14% Similarity=0.134 Sum_probs=230.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCc-HHHHHHHHHHHHHHhcCC-hhH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGT-SEH 151 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~-~~i~~~a~~~L~~l~~~~-~~~ 151 (541)
.+..++.-++++.+..+..++..+.++.+.-....+++-.+.-.+..++.-++.++. ..+......++.+-..+. ..+
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy 796 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY 796 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence 456666677777777777777777777654333334444444445555555554431 223333333333322210 011
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH--HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD--LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~--~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 229 (541)
. ..++..++..|.+.++.++.+|+..++.++.--..|.+ .+...| ..|...| ....+++.-..+.++..+
T Consensus 797 l-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEyl-geeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 797 L-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYL-GEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred h-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhc-CcccHHHHHHHHHHHHHH
Confidence 1 12456677788999999999999999998732221211 122222 2345555 677888888888877777
Q ss_pred hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184 230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (541)
Q Consensus 230 ~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 308 (541)
+..- -.....-..+++|.|..+|++....|+.+++..++.++...++....--=..+.--|+.+|+..+..++..|..+
T Consensus 869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6543 122223357899999999999999999999999999998766532211111344457777888888899999999
Q ss_pred HhHhhcCC--chhHHHHH-----------------------hcCc---hHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-
Q 009184 309 VGNIVTGD--DMQTQCVI-----------------------EYQA---LPCLLNLLSGNYKKSIKKEACWTVSNITAGN- 359 (541)
Q Consensus 309 L~nl~~~~--~~~~~~~~-----------------------~~~~---l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~- 359 (541)
+|.|+..- .+....++ -+|- +|.|+.=...+ +..|+.-.+.+++.+....
T Consensus 949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHH
Confidence 99887521 11111110 1222 33333333334 5566666666666665411
Q ss_pred hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC-----
Q 009184 360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV----- 434 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~----- 434 (541)
....+ ++. -+.|.|-+.|.+.|.--|..|+.++.+++.+.. -.|+.+.++.+|+
T Consensus 1028 emskd-----------Yiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpN 1086 (1172)
T KOG0213|consen 1028 EMSKD-----------YIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPN 1086 (1172)
T ss_pred HHhhh-----------HHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhh
Confidence 11111 111 367888888888899999999999999988531 2355666666664
Q ss_pred --CCChHHHHHHHHHHHHHHHh-hHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009184 435 --CPDPRIVTVCLEGLENILKV-GEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD 508 (541)
Q Consensus 435 --~~~~~~~~~~l~~L~~l~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~ 508 (541)
...|.++....+++..+-.. ++. -.+..+.+=.-|+...|++..-.+++.++-..
T Consensus 1087 Ile~sPhviqa~~e~~eg~r~~Lg~~-------------------~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1087 ILETSPHVIQAFDEAMEGLRVALGPQ-------------------AMLKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred hcCCChHHHHHHHHHHHHHHHHhchH-------------------HHHHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence 24566666666666655432 211 11233333356888888888877777765443
No 60
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.9e-07 Score=91.84 Aligned_cols=353 Identities=17% Similarity=0.173 Sum_probs=240.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
...+.++++....|-+.+.-.-..+.+.+.. .|... .++++.++.=..+++ |.++..|++.++.+.-+ ...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~--~P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~--~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKG--KPDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD--KIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhcc--CchHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh--HHH
Confidence 4678999999998988888888888887765 33322 235777777677777 99999999888877652 232
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
.. +...+...+.+.++.+|..+..+..++-..++ +.+...|++..|-.++ .+.++.+..+|+.+|..+...
T Consensus 120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 22 35778899999999999999999998876655 4667888889888888 688999999999999999987
Q ss_pred CCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 233 ~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
.+. .........+..++..+..-++.-+...+.++.+-...++...+ .++.++...|.+.+..+...+...+.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 753 33344455555555555444454555555565554433332222 467788889999999999999988888
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchh-----hHHH---------H
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF-----SIIA---------V 377 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~-----~~~~---------l 377 (541)
+......... .+-...-+.++.++.+. . +++.-|..-+.-+....+.....-...+-+ -|+. +
T Consensus 266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 8765554222 22234556677777766 4 666666555555544444432211111111 1111 1
Q ss_pred Hh-c---CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 378 IE-A---NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 378 ~~-~---~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
.. . .++..+......-|.+..+++++|+++++.... . ..+++..|.++++..-..++..+...++.+++
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e--~-----~~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAE--Q-----SNDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh--h-----hhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 11 1 144444445555688999999999999987432 2 16899999999998877777778888999998
Q ss_pred hhHhh
Q 009184 454 VGEAE 458 (541)
Q Consensus 454 ~~~~~ 458 (541)
+.++.
T Consensus 416 kyP~~ 420 (734)
T KOG1061|consen 416 KYPNK 420 (734)
T ss_pred cCCCc
Confidence 77664
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.9e-06 Score=86.89 Aligned_cols=383 Identities=16% Similarity=0.201 Sum_probs=191.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (541)
Q Consensus 76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i 155 (541)
..+.+.|++.+.-++-.|+.+|.++.+. +-++. +.|...+++++.+ +-++..|+.|...+....|+....+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~---Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH---HHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence 3444455566665666666666666542 22222 3555566666665 6677777666666666555443333
Q ss_pred --------Hh--CCC----hHHHHHhhCCCC------HHHHHHHHHHHHHhhCCC--hh-----hHHHHHhcCChHHHHH
Q 009184 156 --------ID--HGA----VPIFVKLLYSPS------DDVREQAVWALGNIAGDS--PR-----CRDLVLSQGGLVPLLA 208 (541)
Q Consensus 156 --------~~--~g~----i~~L~~lL~~~~------~~v~~~a~~~L~nl~~~~--~~-----~r~~i~~~g~i~~Ll~ 208 (541)
.+ .|+ +..+..++.... ..+...-+..|.++.... ++ ..+.+++- -+-.+++
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi-~iLrlLr 259 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI-RILRLLR 259 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH-HHHHHHH
Confidence 11 222 222333332211 223344444555554221 11 11111111 0222344
Q ss_pred hhcCCChhhHHHHHHHHHHhhhcCCCCC---Chh-----------------hhhchHHHHHHhhccCChhHHHHHHHHHH
Q 009184 209 QLNGQPKLSMLRNATWTLSNFCRGKPQP---PFD-----------------QVSPALPALAHLIHSNDDEVLTDACWALS 268 (541)
Q Consensus 209 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~-----------------~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 268 (541)
+| ...+.+.-.....+|..++++.... -.. ...-++..|-++|.+.|..++.-++..|.
T Consensus 260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 44 3334444444445555554432111 011 11223445566666677777777777777
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 009184 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (541)
Q Consensus 269 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 348 (541)
.....++...+ .. =..++.+|++++..++..|+..+-.++..+. ... .+..|+..|.+. +++.+...
T Consensus 339 r~V~~d~~avq---rH--r~tIleCL~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~ 405 (866)
T KOG1062|consen 339 RVVQQDPTAVQ---RH--RSTILECLKDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADI 405 (866)
T ss_pred hhhcCCcHHHH---HH--HHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHH
Confidence 76655543222 11 2457888999999999999999888875443 222 345688888887 88888888
Q ss_pred HHHHHHHhcC-ChH---HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-------------------------chhHHH
Q 009184 349 CWTVSNITAG-NRE---QIQVIMHVHAFSIIAVIEANIIGPLVALLENA-------------------------EFDIKK 399 (541)
Q Consensus 349 ~~~L~nl~~~-~~~---~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-------------------------~~~v~~ 399 (541)
+.-+..++.. .++ .++..+.... ....++...++..+++++.+. ...+..
T Consensus 406 as~I~~laEkfaP~k~W~idtml~Vl~-~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~q 484 (866)
T KOG1062|consen 406 ASKIAELAEKFAPDKRWHIDTMLKVLK-TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQ 484 (866)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHH-hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 8777777762 121 2221111100 001122233444444444332 234566
Q ss_pred HHHHHHHHhc----cCCCHHHHHHHHHcCChHHHhhhcCCC--ChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHh
Q 009184 400 EAAWAISNAT----SGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI 473 (541)
Q Consensus 400 ~a~~aL~nl~----~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i 473 (541)
-|.|+|+... .++..+.-...-+..++..|..++.+. +..+...++.++.+|....... .+.+
T Consensus 485 Va~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-------~~ri---- 553 (866)
T KOG1062|consen 485 VASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-------SERI---- 553 (866)
T ss_pred HHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-------HHHH----
Confidence 6778877543 111111111112345677787877653 4556666666666655322211 1111
Q ss_pred hhcchHHHHHHHhcCCCHHHHHHHHH
Q 009184 474 DDAEGLEKIESLQTHDNAEIYEKSVK 499 (541)
Q Consensus 474 ~~~~~~~~l~~L~~~~~~~i~~~a~~ 499 (541)
-+.|.....+-+.+++.+|.+
T Consensus 554 -----~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 554 -----KQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred -----HHHHHHhcccccHHHHHHHHH
Confidence 134455566777777777644
No 62
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.82 E-value=1.3e-06 Score=85.89 Aligned_cols=354 Identities=14% Similarity=0.120 Sum_probs=216.7
Q ss_pred CCHHHHHHhhcC-------CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 009184 73 ENLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (541)
Q Consensus 73 ~~l~~l~~~L~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~ 145 (541)
+.+|.++++|.. +|+..-..|..+|.-+.... .+.+.+. ++...=+-+.+++ +.-++.|+.+++.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence 468999998875 23455566666665444321 1222222 3333344566776 889999999999999
Q ss_pred cCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh--cCCChhhHHHHHH
Q 009184 146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL--NGQPKLSMLRNAT 223 (541)
Q Consensus 146 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l--~~~~~~~~~~~a~ 223 (541)
.+..+....-+-..++|.+...+.++..-+++.++|+++.|+.+-+. .+-..|-++..+... .-...+.+..+++
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 87655554444457899999999888888999999999999865432 333333333333322 1234567788999
Q ss_pred HHHHhhhcCCCCCC---hhhhhchHH----HHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009184 224 WTLSNFCRGKPQPP---FDQVSPALP----ALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (541)
Q Consensus 224 ~~L~~l~~~~~~~~---~~~~~~~l~----~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL 294 (541)
|..-||..+-+... ........+ .|++... -++...+..+..+|+.+....++....+. .|+.....+-|
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl 550 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKL 550 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHH
Confidence 99999988763322 222233333 3333322 23556778888888877655443322211 13333322222
Q ss_pred -----------CCCC----hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184 295 -----------MHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (541)
Q Consensus 295 -----------~~~~----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (541)
...+ .+++..-+..|..+........+.+ ...++..++++|++.....+-.....++++++..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 1122 3456666666666665444322222 23467788889988733456678888999998744
Q ss_pred hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC--
Q 009184 360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-- 437 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~-- 437 (541)
.+... ..-..++|.|.+.|...+..+...|+..++.++..-..+... .....+..|+++|+++.
T Consensus 630 ~e~Fe------------~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~--y~d~~ms~LvQ~lss~~~~ 695 (858)
T COG5215 630 EERFE------------QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNI--YADVLMSSLVQCLSSEATH 695 (858)
T ss_pred HHHHH------------HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcChhhc
Confidence 44443 223479999999998889999999999999987643333322 23456788999998754
Q ss_pred hHHHHHHHHHHHHH
Q 009184 438 PRIVTVCLEGLENI 451 (541)
Q Consensus 438 ~~~~~~~l~~L~~l 451 (541)
.++.-.+|..+.-|
T Consensus 696 R~lKPaiLSvFgDI 709 (858)
T COG5215 696 RDLKPAILSVFGDI 709 (858)
T ss_pred cccchHHHHHHHHH
Confidence 33444444444444
No 63
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.6e-05 Score=83.46 Aligned_cols=329 Identities=16% Similarity=0.178 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHccCCCCcHHHHH-----hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184 88 GVQYECTTQFRKLLSIERSPPIEEVI-----RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (541)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~i-----~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (541)
+-...++.+|+++++. +|....+. --|.++.+..+|....+++++..|+.++..++. +.++...+...|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 3456789999999976 55433332 246788888888776668999999999988877 788999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCC--Chh
Q 009184 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP--PFD 239 (541)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~--~~~ 239 (541)
.|+.+|.+. +..|+.++..|..+++... .....++.|++..++.++..+.++..+..++..+..+..++ ..+ ...
T Consensus 1817 ~LL~lLHS~-PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHSQ-PSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHHhcC-hHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 999999763 6788999999999987665 66677889999999999988889999999999999998776 222 221
Q ss_pred hh-----------hchHHHHHHhhcc--CChhH------HHHHHHHHHHhcc--------CC------hHH---------
Q 009184 240 QV-----------SPALPALAHLIHS--NDDEV------LTDACWALSYLSD--------GT------NDK--------- 277 (541)
Q Consensus 240 ~~-----------~~~l~~L~~lL~~--~d~~v------~~~a~~~L~~l~~--------~~------~~~--------- 277 (541)
.+ .+.-.+.++++.. +++++ +...-..+..+.. ++ ++.
T Consensus 1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 11 1112344555542 23332 1111112222211 00 000
Q ss_pred ---------HHH------------HHHhCcHHHHHHhhCCCChh--hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH
Q 009184 278 ---------IQA------------VIEAGVFPRLAEFLMHPSPS--VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (541)
Q Consensus 278 ---------~~~------------~~~~g~l~~L~~lL~~~~~~--v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (541)
... ..-.++++.+.++|..+++. ...-...++..+....+...+.+-.-|.+|.++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 000 01114556666666544332 2222333444455556666666667799999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCH
Q 009184 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 414 (541)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 414 (541)
.+... +..+-+.|..+|..++.. .-..+ .+.....+..++..++.. +...--|+.+|..+......
T Consensus 2055 Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~-----------AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~ 2120 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSEN-QFCCD-----------AMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTG 2120 (2235)
T ss_pred HHHhc-CCcCcHHHHHHHHHHhhc-cHHHH-----------HHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHH
Confidence 99877 666778899999999873 44455 666656666677766543 35555888888888876566
Q ss_pred HHHHHHHHcCChHHHhhhcCC
Q 009184 415 EQIKFLVIQGCIKPLCDLLVC 435 (541)
Q Consensus 415 ~~~~~l~~~~~i~~L~~lL~~ 435 (541)
+........|.++.|..+|++
T Consensus 2121 eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2121 ELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHhccCcHHHHHHHhcc
Confidence 666667788999999999975
No 64
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.5e-07 Score=94.46 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=129.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
..++.++....+.+|.++..|++....+ . .+.+. ..+...+...+++.+ +-++..|+.+..++-..+ .
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~-v~~i~----ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~ 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL---R-VDKIT----EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE---e-ehHHH----HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence 3455555555566777776666654432 1 11111 124677888888888 999999999999887654 3
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
+.+.+.|.++.|-.++.++++.+...|+.+|..|....+..-...+....+..++..+ +.-.-..-+.++-.++..
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhc
Confidence 4566789999999999999999999999999999866553111111222233344333 222223334445555555
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
.|... .-...++..+...|.+.+..+...+...+.++...-... ...+-..+-+.++.++.... .+..-|++-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 44433 333455556666666666666666666666555433321 11222244455555555544 4444454444444
Q ss_pred h
Q 009184 313 V 313 (541)
Q Consensus 313 ~ 313 (541)
.
T Consensus 307 l 307 (734)
T KOG1061|consen 307 L 307 (734)
T ss_pred H
Confidence 3
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.3e-05 Score=79.39 Aligned_cols=371 Identities=16% Similarity=0.161 Sum_probs=205.5
Q ss_pred CCCchHHhhhhhhHHHHHHHHhhH--HHHHhhh-hccc---cCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCHHHHHH
Q 009184 19 AVDADEGRRRREDNMVEIRKNKRE--ESLQKKR-REGL---QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYE 92 (541)
Q Consensus 19 ~~~~~~~r~~r~~~~~~lRk~~r~--~~l~~~R-~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~~~~~~ 92 (541)
..+..|.|+-=......||+.-|+ .-..+|| ++.- -+-.+.|. -++.+ .-++++.|++-..+.-
T Consensus 20 akT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypa---------hFGqi-eclKLias~~f~dKRi 89 (866)
T KOG1062|consen 20 AKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPA---------HFGQI-ECLKLIASDNFLDKRI 89 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCc---------cchhh-HHHHHhcCCCchHHHH
Confidence 345556666555556677877776 3333333 2210 00000110 12222 3345556655443333
Q ss_pred HHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCC
Q 009184 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS 172 (541)
Q Consensus 93 a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~ 172 (541)
+--...-++. ++.+ ...+ +...+.+=|++++ .-+.-.|+.+|++|++ +|.... ..|-+.+++++.+
T Consensus 90 GYLaamLlLd-E~qd-vllL----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~ 155 (866)
T KOG1062|consen 90 GYLAAMLLLD-ERQD-LLLL----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRD 155 (866)
T ss_pred HHHHHHHHhc-cchH-HHHH----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCC
Confidence 3333333332 2122 2221 2344555566777 7788889999999987 555443 3577888999999
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh
Q 009184 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI 252 (541)
Q Consensus 173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL 252 (541)
+.+|..|+.|...+....|...+. ++++..++| .+.+..+....+..+..+|...+. .......+++-++..|
T Consensus 156 ~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~-~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 156 PYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLL-CEKHHGVLIAGLHLITELCKISPD-ALSYFRDLVPSLVKIL 228 (866)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHH
Confidence 999999999999998777754333 566666777 555677777777777777776432 2223344555555555
Q ss_pred c---------------cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHHHHhHhhc
Q 009184 253 H---------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVT 314 (541)
Q Consensus 253 ~---------------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~L~nl~~ 314 (541)
+ -+||-++..+++.|.-+..++.+..+.+.+ ++..+..--.+. -..+..+++++|..|-.
T Consensus 229 k~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~GnAILYE~V~TI~~I~~ 306 (866)
T KOG1062|consen 229 KQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGNAILYECVRTIMDIRS 306 (866)
T ss_pred HHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHHHhccC
Confidence 3 135667777777777777665544443322 222222211111 12355555555554443
Q ss_pred CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc
Q 009184 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE 394 (541)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~ 394 (541)
...-. + -++..|-+.|.+. +..+|.-|+.+|......++...+ . ==..+++.|+++|
T Consensus 307 ~~~Lr---v---lainiLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avq-----------r-----Hr~tIleCL~DpD 363 (866)
T KOG1062|consen 307 NSGLR---V---LAINILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQ-----------R-----HRSTILECLKDPD 363 (866)
T ss_pred CchHH---H---HHHHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHH-----------H-----HHHHHHHHhcCCc
Confidence 22211 1 1344555666666 666666666666666654444333 1 1134666777778
Q ss_pred hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 395 FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 395 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
..+|+.|+..+..++...+.. . +++.|+.+|...++++...+...+..+.+
T Consensus 364 ~SIkrralELs~~lvn~~Nv~---~-----mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNESNVR---V-----MVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHHHHhccccHH---H-----HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 888888887777776643322 1 34566666666666666555554444443
No 66
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=6.9e-06 Score=83.49 Aligned_cols=320 Identities=16% Similarity=0.121 Sum_probs=158.3
Q ss_pred hcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH
Q 009184 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV 204 (541)
Q Consensus 125 L~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~ 204 (541)
|++++ +-+|-..++.|+.+-. ++... ..+|.+...|.+.+.-+|..|..++..|..... .++ -.+-+
T Consensus 108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDape 174 (948)
T KOG1058|consen 108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPE 174 (948)
T ss_pred ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHH
Confidence 34454 5566666666655433 33322 457888888888999999999999888864321 111 12334
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh---ccCChhHHHHHHHHHHHhccCChHHHHHH
Q 009184 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALSYLSDGTNDKIQAV 281 (541)
Q Consensus 205 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL---~~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 281 (541)
.+-..|....|+...++|.-.|...-.. .++..+...+ .+-++..+.-....+...+...+..
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~---- 240 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE---- 240 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH----
Confidence 4445555677888888877665543221 1112221111 1112333333333333333322221
Q ss_pred HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (541)
Q Consensus 282 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (541)
+...+..++.+|.+.++.++-.|..+|.+++....... . ....++.++....+..++.-...-|..+......
T Consensus 241 -~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk-~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~ 313 (948)
T KOG1058|consen 241 -KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK-A-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK 313 (948)
T ss_pred -hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH-H-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH
Confidence 12345555666655555555555555555543222111 0 1122333333222333333333333333322222
Q ss_pred HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHH---------------------
Q 009184 362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL--------------------- 420 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l--------------------- 420 (541)
..+ |.+--+++.|+++|.+++..++.....++...+.+.+..+
T Consensus 314 il~----------------~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRq 377 (948)
T KOG1058|consen 314 ILQ----------------GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQ 377 (948)
T ss_pred HHH----------------HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHH
Confidence 221 2223333444444444444444433333332221111110
Q ss_pred ---------------HHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH
Q 009184 421 ---------------VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 485 (541)
Q Consensus 421 ---------------~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L 485 (541)
+...+++.|++.+.+.++.....++..++..++..++.+ ...++ ..++.+
T Consensus 378 lLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----------~~ii~-----~l~~~~ 442 (948)
T KOG1058|consen 378 LLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----------ASIIE-----KLLETF 442 (948)
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----------HHHHH-----HHHHhh
Confidence 223467788888888887777777777777776665532 11121 223334
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCCC
Q 009184 486 QTHDNAEIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 486 ~~~~~~~i~~~a~~il~~~~~~~~ 509 (541)
-.-...+++.-|.||+.+|...+.
T Consensus 443 ~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 443 PQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhhcccccchhHHHHHHHHHhhhH
Confidence 445677888999999999988766
No 67
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.7e-05 Score=79.62 Aligned_cols=339 Identities=16% Similarity=0.124 Sum_probs=215.3
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
++..|..-+..+. +.+|.....||.-+......... ....+.+.+++......-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 5778888888888 99999999888877652211111 12457778888888888888899999988866542 34
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-Ch
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TN 275 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~ 275 (541)
+.+.+++..+...+....+..-++.++.+.-..+..-...........+|.++....+..+.++..+..+...+... +.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 45667788888888333333333334444444443332222334456667776666677788888777766554432 11
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (541)
Q Consensus 276 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (541)
.... -+++.++.-+....|.....++..+|.++...+.+... .-..++|.+...|.+. ++++|+.+..++.++
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 1111 23444544444458899999999999999888777644 3468999999999999 999999999999999
Q ss_pred hc--CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHhh
Q 009184 356 TA--GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG--THEQIKFLVIQGCIKPLCD 431 (541)
Q Consensus 356 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~ 431 (541)
+. .+++ ++ .++|.|++.+.++...+. ++...|+.-.... ++..+.. +++.|.+
T Consensus 323 ~svidN~d-I~----------------~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R 379 (569)
T KOG1242|consen 323 GSVIDNPD-IQ----------------KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKR 379 (569)
T ss_pred HHhhccHH-HH----------------HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHH
Confidence 88 4454 44 378899998876653332 3333333221111 1111111 2334444
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 009184 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 502 (541)
Q Consensus 432 lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~ 502 (541)
-+...+..+...+..++.|+...-+..+. ..+|...+ +..++.......|+++..+...+.
T Consensus 380 ~l~eRst~~kr~t~~IidNm~~LveDp~~-----lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 380 GLAERSTSIKRKTAIIIDNMCKLVEDPKD-----LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred HHhhccchhhhhHHHHHHHHHHhhcCHHH-----HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHH
Confidence 44555667778888899999887644332 23333333 345555555668999988877663
No 68
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.72 E-value=5.2e-06 Score=84.14 Aligned_cols=259 Identities=15% Similarity=0.128 Sum_probs=164.3
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh-HHHHHHH
Q 009184 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVI 282 (541)
Q Consensus 205 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~ 282 (541)
.++..| +++++.++..++..++.++.--... .......+=-.|...|...+++++-..+.++..+..... .....-+
T Consensus 803 tiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 803 TILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 334444 6677888888888887776432111 122223333456677778889998888888777653211 0000011
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChH
Q 009184 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NRE 361 (541)
Q Consensus 283 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 361 (541)
.+++|.|..+|++.+..++..++..+|.|+...++....--=..+.--|+.+|... +..+|..|..+++.|+.. .+.
T Consensus 882 -~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~IakaIGPq 959 (1172)
T KOG0213|consen 882 -KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAKAIGPQ 959 (1172)
T ss_pred -hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhcCHH
Confidence 28999999999999999999999999999987765431100001223477778777 889999999999999872 121
Q ss_pred HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHH
Q 009184 362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 441 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 441 (541)
.++..|++-|+..+..-|.....++.-.+..+.+ ..+++.|+.--..++..++
T Consensus 960 -------------------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p--------FtVLPalmneYrtPe~nVQ 1012 (1172)
T KOG0213|consen 960 -------------------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP--------FTVLPALMNEYRTPEANVQ 1012 (1172)
T ss_pred -------------------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc--------hhhhHHHHhhccCchhHHH
Confidence 2445666666665544444333344433332222 2367777777778888899
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184 442 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 505 (541)
Q Consensus 442 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~ 505 (541)
.-+|+++..++.+-.+..+ .|.-.+ ...|++-....+.--+..|..+|.++-
T Consensus 1013 nGVLkalsf~Feyigemsk-------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1013 NGVLKALSFMFEYIGEMSK-------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HhHHHHHHHHHHHHHHHhh-------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 9999999999986544322 133222 345666666677777777777777654
No 69
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=0.00013 Score=67.47 Aligned_cols=351 Identities=15% Similarity=0.127 Sum_probs=229.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc---HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
.|.+-..|..+|..++..++..+..++...+... +..+++.++++.++.++..++ .++...|...+..|+. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 4555566777888899999999988886532222 455668999999999999988 8999999999999998 6777
Q ss_pred HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184 152 TKVVIDHGAVPIFV--KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 152 ~~~i~~~g~i~~L~--~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 229 (541)
...+++......+- .+.-.-+.-.|..++..+..|.+-++.....+..+|.+..|..-|....|.-++.+++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 88888777665442 2222344556667788888888888888888889999999999896668888899999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCChH---HHHHHHHh--CcHHHHHHhhCCCChhhH
Q 009184 230 CRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTND---KIQAVIEA--GVFPRLAEFLMHPSPSVL 302 (541)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--g~l~~L~~lL~~~~~~v~ 302 (541)
........+....++++.+..++.-. ++--...++.....+.....- .-+.+++. -.++.....+...++...
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 98777777777788999988888633 443334344444433311100 01112221 234445556677888999
Q ss_pred HHHHHHHhHhhcCCchhHHHHHhcCc--hHH-HHHhhcCCCchhHHHHHHHHHHHHhc---CChHHHHHHHhhchhh---
Q 009184 303 IPALRTVGNIVTGDDMQTQCVIEYQA--LPC-LLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFS--- 373 (541)
Q Consensus 303 ~~al~~L~nl~~~~~~~~~~~~~~~~--l~~-L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~--- 373 (541)
..|+.++|.+.+... ..+.+...|- ... +.+....+ ...-+..+..+|.+|+. -.++++..=.+.+..+
T Consensus 322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 999999999887544 3334444432 222 33333333 33345667788888876 2333322000000000
Q ss_pred HHHHHh---cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHH-HcCChHHHhh
Q 009184 374 IIAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCD 431 (541)
Q Consensus 374 ~~~l~~---~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~ 431 (541)
|....+ ..-+..+..+++.+.++++..+...+..++. .|-..+.+. ..++++...+
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa--qPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA--QPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc--CcHHHHHHhcCccceeeecc
Confidence 001111 1345556667777889999999999999987 344444444 4566655544
No 70
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.4e-06 Score=85.74 Aligned_cols=321 Identities=17% Similarity=0.087 Sum_probs=200.6
Q ss_pred HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009184 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (541)
Q Consensus 113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 192 (541)
.-.+++++.+..+.+++ ..++..|+..+.|++..-. ......-..+...+.++...++..++. ++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 34678999999999988 8999999999999987311 111111123445666666666666654 44444444322211
Q ss_pred hHH-HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184 193 CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (541)
Q Consensus 193 ~r~-~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 271 (541)
-++ .+--.++++.|-..+ ...++..+...+.-|..|-...+..-......+++.|..+|..+.++|+.-+=.+++...
T Consensus 158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 111 111112333333344 456777777777666666544333333445778899999999999998866666555543
Q ss_pred ---cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCch-hHHHH
Q 009184 272 ---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKE 347 (541)
Q Consensus 272 ---~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~ 347 (541)
..++.. +--...++.++.-+.++++.++..|+.-|..++.-.+... ...-+|++..+++++.+. .+ .++..
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~ 311 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEY 311 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHH
Confidence 122221 1112577888888999999999999888888876554433 334568888899999887 44 35444
Q ss_pred HHHHHHHHhc-CChH-HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHH-HcC
Q 009184 348 ACWTVSNITA-GNRE-QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV-IQG 424 (541)
Q Consensus 348 a~~~L~nl~~-~~~~-~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~ 424 (541)
+...-+.+.. .+.+ ..+ .+--..+++.+...++++..+.|..++.-+..+-.... .+ .++ ...
T Consensus 312 a~~~n~~l~~l~s~~~~~~-----------~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~q--l~~h~~~ 377 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKE-----------EIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQ--LLVHNDS 377 (675)
T ss_pred HHHHHHHHHHHHhhhhhcc-----------ccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-ch--hhhhccH
Confidence 4333222322 1111 111 11112467788888888889999998888877766432 22 222 346
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~ 456 (541)
+...|..-|.+.+..++..+|..+.++....+
T Consensus 378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 378 IFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 78888888998999999999999998886543
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.68 E-value=1.7e-06 Score=83.19 Aligned_cols=271 Identities=17% Similarity=0.173 Sum_probs=184.5
Q ss_pred HHHHHhcCCHHHHHHhhcCCCc-HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 009184 109 IEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNI 186 (541)
Q Consensus 109 ~~~~i~~g~i~~Lv~lL~~~~~-~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl 186 (541)
.+.+...|.+..|+.++..++. ..++.+|+..|-.+.. .++++.+...| +..++.+.+. ..++.....+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3455567889999999999872 3569999999999887 78888888876 5555555544 6688999999999999
Q ss_pred hCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCC-ChhhhhchHHHHHHhhccCChhHHHHHH
Q 009184 187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP-PFDQVSPALPALAHLIHSNDDEVLTDAC 264 (541)
Q Consensus 187 ~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~ 264 (541)
..++.+....++..|++..++-.. +..++.+.+.++.+|.|++-+. ... ..+....+-.-|..+-.+.|+-.+..+|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988888889999999988888 6678999999999999998765 222 2223344445566666677788899999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhH
Q 009184 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (541)
Q Consensus 265 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 344 (541)
.+++-++.+.+ ....+.++|.+..+-.++..-++..... --...+.+. ....++.|+.+|++. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 99999986654 3344666777776666666555422111 000111111 124577899999877 5666
Q ss_pred HHHHHHHHHHHhcCCh--HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHH
Q 009184 345 KKEACWTVSNITAGNR--EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISN 407 (541)
Q Consensus 345 ~~~a~~~L~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~n 407 (541)
+.-+++-++.=+.-.. ...+ .+-+-|.+..|-++.++++.--.+-|-.+|.-
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~k-----------VFseIGAIQaLKevaSS~d~vaakfAseALtv 449 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTK-----------VFSEIGAIQALKEVASSPDEVAAKFASEALTV 449 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchh-----------HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 6555555544333111 1122 34467899999999887764333334444443
No 72
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.4e-06 Score=91.23 Aligned_cols=248 Identities=16% Similarity=0.197 Sum_probs=193.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+++|.+++.|-| .--++.|+..|.+++..+ ...+..-..-|++|-.+++|+++. .+++---+.+-+.|..-++.+.
T Consensus 472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 467777777665 456788999999999765 677888888999999999999998 9999999999999988788888
Q ss_pred HHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184 153 KVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 229 (541)
..+++.++-.++++.|.. -+++-+..|+..|+.|+..-+-.+..+++.+.+...+..|..+..+-+++-++-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 888887778888888876 24688999999999999887767778888888998999995545677888889999999
Q ss_pred hcCCCCCChhh-hhchHHHHHHhhccCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHhCcH---HH
Q 009184 230 CRGKPQPPFDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVF---PR 289 (541)
Q Consensus 230 ~~~~~~~~~~~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~g~l---~~ 289 (541)
-.+.+...... ...+...|..+|..+-++|+..|..+|+.+..+ .+++...+ ++.-+. -.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 88875444443 467788899999999999999999999988764 23222211 221111 24
Q ss_pred HHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHH
Q 009184 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (541)
Q Consensus 290 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~ 324 (541)
++.+++...+-++.+..-++..++.+...+...+.
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 55666778888888888888888887766654443
No 73
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.66 E-value=1e-05 Score=84.19 Aligned_cols=351 Identities=13% Similarity=0.107 Sum_probs=211.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (541)
Q Consensus 77 ~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~ 156 (541)
.+++.+.+.|.+.|+.|+.-|.+-+... .-..+.=-...++..++++|.+.+ .++|..|+.|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 7888899999999999999988777543 222222123457889999999988 999999999999999754444322
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC----hHHHHHhhcCCCh-hhHHHHHHHHHHhhhc
Q 009184 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG----LVPLLAQLNGQPK-LSMLRNATWTLSNFCR 231 (541)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~----i~~Ll~~l~~~~~-~~~~~~a~~~L~~l~~ 231 (541)
..+..|+.-+-+.....+..+..+|......-++.....+...+ .+.+...+....+ ..++-.++..+..+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 12455555544444555555544444333332222222222223 3444444433333 3366666666665544
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHh
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG 310 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~ 310 (541)
.....-...-..++..++.-+.++-..|+..++.+|+.++...+.. +. .+++..|.+-|..+ .......-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 3322212244566677777788888889999999999998554431 11 25667777777543 3444445566677
Q ss_pred HhhcCCchhHHHHHhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 311 NIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
.++.........- -..+++.+.+.. ... +.++|+.+..++..+....+..+. ..+. .++..++
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~-----------p~~p-ei~~l~l 304 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEIL-----------PHVP-EIINLCL 304 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhc-----------ccch-HHHHHHH
Confidence 7665333221111 135677788887 555 789999999999988876565443 1111 1222222
Q ss_pred HHhh-------------------------------cC---chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184 388 ALLE-------------------------------NA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 433 (541)
Q Consensus 388 ~~l~-------------------------------~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 433 (541)
+.+. ++ .+.||++|+.++..++.. ..+....+.+ .+-+.+++=+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~Rf 382 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRF 382 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHH
Confidence 2221 11 267999999999999874 4444444333 3456677777
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 009184 434 VCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 434 ~~~~~~~~~~~l~~L~~l~~ 453 (541)
+.....+..-+..++..+++
T Consensus 383 kEREEnVk~dvf~~yi~ll~ 402 (1233)
T KOG1824|consen 383 KEREENVKADVFHAYIALLK 402 (1233)
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 76666777777777766665
No 74
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=3.5e-05 Score=78.17 Aligned_cols=255 Identities=17% Similarity=0.176 Sum_probs=177.5
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
+-+-++.+|+++. |-++..|+.++..+....|+... ..+|.|..-|..+++.++..|...++.+|+..|.. .
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence 4456677888888 89999999999988876665543 24688999999999999999999999999887752 1
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCC-hhHHHHHHHHHH--HhccC
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALS--YLSDG 273 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~--~l~~~ 273 (541)
+ ..-|.+.++|..+.+.=+....+..+.+|+--.| ..-..+++.|..++.+.. ..+...|..++. +++.+
T Consensus 217 -L--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 -L--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred -c--cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1 2456677777566666566666777777765443 234667888888888764 557777777663 33433
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (541)
Q Consensus 274 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (541)
.++... .+. -.+..|--++.+.++.++.-++.+++.+....+...+.- -+.++++|.+. |+.+|..|+..|.
T Consensus 290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence 211111 111 235667778888999999999999999988776554332 45788999998 9999999999999
Q ss_pred HHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc-hhHHHHHHHHHHHhccCC
Q 009184 354 NITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGG 412 (541)
Q Consensus 354 nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~aL~nl~~~~ 412 (541)
-+.. .+.+. .++..|+..+...+ ...|.+.+.-+..++...
T Consensus 362 gmVs--kkNl~----------------eIVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 362 GMVS--KKNLM----------------EIVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHhh--hhhHH----------------HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 8875 33333 24455555554433 477777777776666544
No 75
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=6.1e-07 Score=87.57 Aligned_cols=307 Identities=14% Similarity=0.106 Sum_probs=196.3
Q ss_pred HHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccC
Q 009184 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN 255 (541)
Q Consensus 177 ~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~ 255 (541)
..++.+|-.+++.-...|.-+.+..+.++|+++| ..++..+.-.++..++|+.-.. +-.......+++..|++++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3444555566666666777888888899999999 6666666677777888877655 4445566789999999999999
Q ss_pred ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch---hHHHHHhc----C
Q 009184 256 DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEY----Q 327 (541)
Q Consensus 256 d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~~~~~----~ 327 (541)
|..++....|.+.++..+++...+ ..+..-++..++.+..++++.++..++.++.|+.+.... ..+..+.. -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999999877654422 245556789999999999999999999999999984432 22222211 2
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHHHHHHhhcC-----------ch
Q 009184 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGPLVALLENA-----------EF 395 (541)
Q Consensus 328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~-----------~~ 395 (541)
....|+..+... +|-.-.+.|+.|.++++.+....+ .+. +..++..+.++|... ..
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~-----------~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~ 633 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDY-----------IVQSQEDMLDSIFEILDEFAGRTPLSPGSKEE 633 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHH-----------HHHhHHHHHHHHHHHHHHHcccCCCCCCCCcc
Confidence 456777888877 776777789999999986554443 222 334555454444321 11
Q ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHcCCh--HHHhhhcCC---CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhh
Q 009184 396 DIKKEAAWAISNATSGGTHEQIKFLVIQGCI--KPLCDLLVC---PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT 470 (541)
Q Consensus 396 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i--~~L~~lL~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 470 (541)
++-.-......++...++ .. +.++. +++-.+=+. ++.+......|.+.++.-..+... .....-..+
T Consensus 634 ~v~~p~s~~~v~l~e~~d--~f----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~--vtratveR~ 705 (743)
T COG5369 634 HVLLPISYTIVNLSENSD--KF----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSE--VTRATVERI 705 (743)
T ss_pred cccCccceeeeccccccc--cc----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCc--cchhhHHHH
Confidence 122222223333332111 10 11111 222222111 223455555555555432211111 001222457
Q ss_pred hHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184 471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 504 (541)
Q Consensus 471 ~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~ 504 (541)
+.+.+.|.-+.+..+|.++++.|++++...++..
T Consensus 706 ~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 706 QILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 8888899999999999999999999999988653
No 76
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.6e-05 Score=72.78 Aligned_cols=291 Identities=18% Similarity=0.170 Sum_probs=183.4
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
+..++.++.+.+ |.++..|+..+..++.. .-+.+. +...++.+.+++....+ .+.|+.++.|++.+.. .|+
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 456888999998 99999999999999885 122222 23567889999987666 6789999999997665 788
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh-------hhhchHHHHHHhhccCCh--hHHHHHHHH
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-------QVSPALPALAHLIHSNDD--EVLTDACWA 266 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~~~~~l~~L~~lL~~~d~--~v~~~a~~~ 266 (541)
.++.. ++..++..+ .++...+...+|..|+|+++........ ...+++.....+...+-. .-..+.+..
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 87776 666667766 5555677888899999999886322111 113344444444443321 234566677
Q ss_pred HHHhccCChHHHHHHHHhCc--HHHHHHhhCCCChhhHH-HHHHHHhHhhcCCchhHHHHHhc--CchHHHHHhhcCCCc
Q 009184 267 LSYLSDGTNDKIQAVIEAGV--FPRLAEFLMHPSPSVLI-PALRTVGNIVTGDDMQTQCVIEY--QALPCLLNLLSGNYK 341 (541)
Q Consensus 267 L~~l~~~~~~~~~~~~~~g~--l~~L~~lL~~~~~~v~~-~al~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~ 341 (541)
+++++.....+ ..+.+... ...+..+-. .+..+|. ..+.+|.|++.....+- .+++. .+++.|+-=+..+ .
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagp-e 231 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGP-E 231 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCc-c
Confidence 78887665544 33444332 222333333 4445554 46678888886554433 33331 2333332222222 1
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc-----CchhHHHHHHHHHHHhccCCCHHH
Q 009184 342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN-----AEFDIKKEAAWAISNATSGGTHEQ 416 (541)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~~~~~ 416 (541)
+ -+.+.+. +.-..| ++|.. +++.+++.-+.+|.-++. +...
T Consensus 232 -e--------------~sEEdm~----------------~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLca--T~~G 277 (353)
T KOG2973|consen 232 -E--------------LSEEDMA----------------KLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCA--TRAG 277 (353)
T ss_pred -c--------------cCHHHHh----------------cCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHh--hhHh
Confidence 0 0222222 233333 66652 478999999999999987 5678
Q ss_pred HHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHHhh
Q 009184 417 IKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 417 ~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~~~ 455 (541)
++.+.+.|+.+.+-.+-++ +|+++...+......++...
T Consensus 278 Re~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 278 REVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLE 317 (353)
T ss_pred HHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 8888999999888887665 57788887777776666543
No 77
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=3.1e-05 Score=79.37 Aligned_cols=343 Identities=15% Similarity=0.188 Sum_probs=211.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (541)
-..+..+|.|.....+..|...|..+...+++ . +..+|..|+...+.+ .+++...---|...+...++..
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA-- 106 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA-- 106 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--
Confidence 35788899998888999999888877655422 2 335889999999988 9999988888888887554432
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (541)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~ 234 (541)
+ =-|..+-+-|.++++.+|..|+++|+.|=. .++. +++-.-++....+..+-+++.|+.++-.|-+-.+
T Consensus 107 L---LSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 107 L---LSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh
Confidence 1 136788889999999999999988887621 1110 0111111112256677888888888887766543
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH----HHH----------------------hC---
Q 009184 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA----VIE----------------------AG--- 285 (541)
Q Consensus 235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~----~~~----------------------~g--- 285 (541)
... ..++..+-.+|...++-|.-.|..++-.+|-..-+.+.. ++. .+
T Consensus 176 e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 176 EQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD 251 (968)
T ss_pred hhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence 322 244455555566666666666666655554322111110 000 00
Q ss_pred ------------------------------------cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCch
Q 009184 286 ------------------------------------VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329 (541)
Q Consensus 286 ------------------------------------~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l 329 (541)
++...-.+|.+.++.+...++.+...++...+ ..+++
T Consensus 252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~ 324 (968)
T KOG1060|consen 252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIA 324 (968)
T ss_pred ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHH
Confidence 11122233444555666666666666654221 13457
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc-hh------------h-HHHHHhcC----cHHHHHHHhh
Q 009184 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH-AF------------S-IIAVIEAN----IIGPLVALLE 391 (541)
Q Consensus 330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-~~------------~-~~~l~~~~----~l~~L~~~l~ 391 (541)
..|+.+|.+. ..+|.-.+..+..++...+......++.+ .+ + ...+++.+ +++.+..+..
T Consensus 325 kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~ 402 (968)
T KOG1060|consen 325 KALVRLLRSN--REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIK 402 (968)
T ss_pred HHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Confidence 7888888764 56777777777777665554433222211 00 1 11222222 4455555666
Q ss_pred cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184 392 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 392 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~ 457 (541)
+.+.++...++.+|+.++..... +...++..|+.++++.|..++..+.-.|+.|++..+.
T Consensus 403 s~d~~faa~aV~AiGrCA~~~~s------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 403 SSDRSFAAAAVKAIGRCASRIGS------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred cCchhHHHHHHHHHHHHHHhhCc------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 77778888899999988763211 3445788999999999988888888888888876554
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=8.2e-06 Score=80.41 Aligned_cols=317 Identities=13% Similarity=0.115 Sum_probs=203.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.++.++.++...|..+++-|+..+.+++..-+...... -..+...+.++..+++ ..++. ++..+-.+..+-.....
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence 57888889998999999999999888876532222211 2445677778777766 55543 44444444332111111
Q ss_pred -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH-hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 154 -VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 154 -~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
.+-=.+++|.|-.-+...++..|...+.-|.-+-.- | ..+.+- -..+++.|+..| .+++.+++..+-.+++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 111124556666556667788887776666655322 2 223322 123566777778 77788888777777777765
Q ss_pred CC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCh-hhHHHHHHHH
Q 009184 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALRTV 309 (541)
Q Consensus 232 ~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~-~v~~~al~~L 309 (541)
.- ..+........++.++.-+.++++.++..|+.-+.....-..... ...-+|++..+++++.+..+ .++..+...-
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 44 333333557788999999999999998777665555554333221 23445888888888877665 3554444332
Q ss_pred ---hHhhcCCchhHHHHHhc-CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHH
Q 009184 310 ---GNIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGP 385 (541)
Q Consensus 310 ---~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 385 (541)
..++....... . ++. .+++.+.+.+.++ ..+.|.++..-+..+-...+.++ ......+++.
T Consensus 317 ~~l~~l~s~~~~~~-~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql------------~~h~~~if~t 381 (675)
T KOG0212|consen 317 GLLLKLVSSERLKE-E-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL------------LVHNDSIFLT 381 (675)
T ss_pred HHHHHHHhhhhhcc-c-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh------------hhhccHHHHH
Confidence 22222111111 1 333 4678889999988 88899888877777776555544 3456689999
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhccCCC
Q 009184 386 LVALLENAEFDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 386 L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 413 (541)
|+..|++.+.+|...++..+.+++...+
T Consensus 382 LL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 382 LLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999987543
No 79
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.55 E-value=1.2e-05 Score=77.53 Aligned_cols=267 Identities=14% Similarity=0.082 Sum_probs=175.9
Q ss_pred CCHHHHHHhhcCCCHH--HHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 73 ENLPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~--~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
+.+..++.++.+++.+ ++.++.+.|..++.. .+.+.+..-| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 5788899999987754 589999999999864 4555565555 445555555555589999999999999999999
Q ss_pred HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 229 (541)
....++..|++..++-.....++.+..+|+.+|+|++-+. ...+..+++..+-+-|.-+. .+.|.-++.++|.+.+.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999999999989999999999999998443 34555566665555455444 666888899999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 309 (541)
+..+.........+.+..+-.++.+-|+.--.. --...+.+ ....-+++|+.+|++...+.+.-+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988755444444555555555555555442111 00111111 1114577888899865544333333222
Q ss_pred hHhhcCC--chhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184 310 GNIVTGD--DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (541)
Q Consensus 310 ~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (541)
+.=+.-. ....+.+-+-|.++.|-.+.+++ +..--+-|-.+|.-|.
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG 451 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence 2211111 12233445678899999998876 5544444444444443
No 80
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.54 E-value=0.0001 Score=77.18 Aligned_cols=418 Identities=17% Similarity=0.189 Sum_probs=229.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHh-------------------------------------cC
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-------------------------------------SG 116 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~-------------------------------------~g 116 (541)
.+..+++.|...+.++|..|++++.-+.+.-+...+..+++ ..
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 46677778877888888888888886554432222222221 11
Q ss_pred CHHHHHHhhc----C-CCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009184 117 VVPRFVEFLL----R-EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (541)
Q Consensus 117 ~i~~Lv~lL~----~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 191 (541)
+++.+...+. . .+...++..++..++.+.+......-. ...+++..++.-+.++...++..++.+|+.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 2222222221 1 111235555555555444311111000 123444555556677888999999999999986654
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh---ccCChhHHHHHHHHHH
Q 009184 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALS 268 (541)
Q Consensus 192 ~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL---~~~d~~v~~~a~~~L~ 268 (541)
. +.. .+.+..+++-|...+.....+....+|..+|+.....-......++|.+.... ..+++++++.++.++.
T Consensus 207 ~--~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 207 R--DLY--VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred H--HHH--HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 2 222 23677888888777788888889999999998765544455677888888888 6678899999999988
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCC----------------------------------CChhhHHHHHHHHhHhhc
Q 009184 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMH----------------------------------PSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 269 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~----------------------------------~~~~v~~~al~~L~nl~~ 314 (541)
.+....+..+...+. .++..+++.+.. -+|.+|.+|+.++..+..
T Consensus 283 ~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred HHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence 776555543332221 334444444321 125799999999988876
Q ss_pred CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh--------------------------
Q 009184 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH-------------------------- 368 (541)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-------------------------- 368 (541)
...+....+.. .+-|.++.-++.. ...|+.....+...+....+..+..+-+
T Consensus 362 SR~E~L~~~~q-~l~p~lI~RfkER-EEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVka 439 (1233)
T KOG1824|consen 362 SRLEMLPDFYQ-TLGPALISRFKER-EENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKA 439 (1233)
T ss_pred ccHHHHHHHHH-HhCHHHHHHHHHH-hhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHH
Confidence 55443322221 2333344444333 3333333333332222211110000000
Q ss_pred -------------hchhhH-HHH--------H--hcCcHHHHHHHhhcC--chhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 009184 369 -------------VHAFSI-IAV--------I--EANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVI 422 (541)
Q Consensus 369 -------------~~~~~~-~~l--------~--~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 422 (541)
...|.. ..+ . ...++|.++..+.+. ....+..++..+.++.....++...-+.
T Consensus 440 i~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~- 518 (1233)
T KOG1824|consen 440 IQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL- 518 (1233)
T ss_pred HHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-
Confidence 001100 000 0 113456666666543 3567788888888877766655433322
Q ss_pred cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH-hcCCCHHHHHHHHHHH
Q 009184 423 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLL 501 (541)
Q Consensus 423 ~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L-~~~~~~~i~~~a~~il 501 (541)
..+.+++......+-+++..-+|-....++++-.........+.++|...+-. -.+..| ....+.+|+++|...+
T Consensus 519 ~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~----~tl~rL~a~d~DqeVkeraIscm 594 (1233)
T KOG1824|consen 519 SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD----CTLQRLKATDSDQEVKERAISCM 594 (1233)
T ss_pred hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH----HHHHHHhcccccHHHHHHHHHHH
Confidence 12344455555556667766667666666665443322111234555554442 234444 3678999999997655
Q ss_pred HHh
Q 009184 502 ETY 504 (541)
Q Consensus 502 ~~~ 504 (541)
..|
T Consensus 595 gq~ 597 (1233)
T KOG1824|consen 595 GQI 597 (1233)
T ss_pred HHH
Confidence 443
No 81
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=9.8e-05 Score=74.34 Aligned_cols=344 Identities=17% Similarity=0.171 Sum_probs=222.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.+..+++.+..+.+.+|.....++.-+........... +.+.+.++++... ..-+..+++.+..+..+.. ..
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~~--i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGLG--IE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCcH--Hh
Confidence 45667777777888899998888887665432333333 4677888888777 7888999999999988643 33
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHH-HHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVRE-QAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~-~a~~~L~nl~~~-~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
.+.+.+++..|...+.+.....+. .++.+.-..+.. ++..-..++. .++.++.-. .+....++..+..+...+.+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 455667888888888774433333 333333333221 1211112222 344455444 45667788888777776665
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
.-+. ..+..++|.++.-+..........++..++.++...+.+.. ..-..++|.+.+.|.+.++.++..+..++..
T Consensus 246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5321 22344556655555545667778888888888877776654 4556899999999999999999999999999
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVA 388 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 388 (541)
++..-+..- + ..++|.|+..+.++ ... -.++...|+.-+. -.+.... -++|.|.+
T Consensus 322 ~~svidN~d---I-~~~ip~Lld~l~dp-~~~-~~e~~~~L~~ttFV~~V~~psLa----------------lmvpiL~R 379 (569)
T KOG1242|consen 322 FGSVIDNPD---I-QKIIPTLLDALADP-SCY-TPECLDSLGATTFVAEVDAPSLA----------------LMVPILKR 379 (569)
T ss_pred HHHhhccHH---H-HHHHHHHHHHhcCc-ccc-hHHHHHhhcceeeeeeecchhHH----------------HHHHHHHH
Confidence 886443211 1 24577888888776 322 2344444443322 1111111 24666777
Q ss_pred HhhcCchhHHHHHHHHHHHhccCC-CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 389 LLENAEFDIKKEAAWAISNATSGG-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 389 ~l~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
-+...+..+++.++.++.|++.-- ++.....+.. .+++.|-..+....|+++..+..+|..+++.-
T Consensus 380 ~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 380 GLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 777778899999999999998643 3333222221 35667777777778999999999998887643
No 82
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.50 E-value=4.4e-06 Score=82.99 Aligned_cols=335 Identities=16% Similarity=0.145 Sum_probs=201.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCC-CCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
.+..++..|++..|.++..|+.....+...-+ ......+...|. .|.+.|.... |++.-..+.++..|.+.. ..+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~-~~~ 680 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVH-RFR 680 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhh-ccc
Confidence 35667788899999999999887765543211 122333434443 4677777776 888877777777776521 111
Q ss_pred HH-HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184 153 KV-VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (541)
Q Consensus 153 ~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 228 (541)
.. ---.|++|.|.-+|.+....+....+..++.||..+|+. |+-.. +.-.|+..| ++.+.+++++|..++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFGC 756 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhhh
Confidence 00 012489999999999999999999999999999877752 22111 233466777 77789999999999998
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (541)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 308 (541)
+++.- .-..++..|+.-|...+-..+....-+++-.+..+.- ..++|.|+.=-..++..++.-.+++
T Consensus 757 Is~ai------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 757 ISRAI------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred HHhhc------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHH
Confidence 88753 1144566666666554444333333333332221110 1345555555566788889888988
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA 388 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 388 (541)
++.+...-.+.....+ .-+.|.|-..|.+. ++.-|..|...+..++.+.+..-.. + .++ .++..|..
T Consensus 824 m~fmFeyig~~s~dYv-y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~e----d-----a~I--HLlNllwp 890 (975)
T COG5181 824 MCFMFEYIGQASLDYV-YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDE----D-----AAI--HLLNLLWP 890 (975)
T ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccH----H-----HHH--HHHHHhhh
Confidence 8877754333221111 34677788888888 9999999999999998753322110 0 111 13333443
Q ss_pred HhhcCchhHHHH---HHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 389 LLENAEFDIKKE---AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 389 ~l~~~~~~v~~~---a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
-+-.+.|.+... ++.++.+.... ....++ +.+=|-.+...++. .-+...+++..
T Consensus 891 NIle~sPhvi~~~~Eg~e~~~~~lg~--g~~m~Y---------v~qGLFHPs~~VRk-~ywtvyn~myv 947 (975)
T COG5181 891 NILEPSPHVIQSFDEGMESFATVLGS--GAMMKY---------VQQGLFHPSSTVRK-RYWTVYNIMYV 947 (975)
T ss_pred hccCCCcHHHHHHHHHHHHHHHHhcc--HHHHHH---------HHHhccCchHHHHH-HHHHHHhhhhh
Confidence 334456666554 44455554432 233333 33334455555554 45666666644
No 83
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.7e-05 Score=78.63 Aligned_cols=304 Identities=13% Similarity=0.194 Sum_probs=199.9
Q ss_pred hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh
Q 009184 71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (541)
Q Consensus 71 ~~~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~ 149 (541)
-++.++-+...|.+ +++.++..|+..+..+.+. .+....+...|++..|+.+|.+. |..+..++.+|..+++ ++
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NG 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-Cc
Confidence 45677788888875 7889999999999877654 67788899999999999999764 7999999999999998 67
Q ss_pred hHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---hhhHHHHHhc----------CChHHHHHhhcC-CC
Q 009184 150 EHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS---PRCRDLVLSQ----------GGLVPLLAQLNG-QP 214 (541)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~---~~~r~~i~~~----------g~i~~Ll~~l~~-~~ 214 (541)
+......+.|++..+..++.. .++..|.+++..++.+..+. |..+-.++.. +.-+..+..+.. +.
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 777788888888888876654 77899999999999997543 2222211110 012333333321 11
Q ss_pred hh------hHHHHHHHHHHhhh----cCC---CCC--------------------------------------Chhhhhc
Q 009184 215 KL------SMLRNATWTLSNFC----RGK---PQP--------------------------------------PFDQVSP 243 (541)
Q Consensus 215 ~~------~~~~~a~~~L~~l~----~~~---~~~--------------------------------------~~~~~~~ 243 (541)
++ ..+......+..+. +.. |.. ......+
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence 22 22222222222221 111 100 0112244
Q ss_pred hHHHHHHhhccCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184 244 ALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (541)
Q Consensus 244 ~l~~L~~lL~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 321 (541)
++..+..++..+++ ....-...++..+....+...+.+-..|.+|.++..+...+..+-..|++.|..++.. .-..+
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHH
Confidence 55556666654432 2223333344444445555555566669999999999888888889999999999863 34445
Q ss_pred HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC
Q 009184 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA 393 (541)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~ 393 (541)
.+.....+..+++.+... +...--|+.+|-.+.. ...+.+. ..++.|++|.|+.+|...
T Consensus 2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVA-----------Q~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVA-----------QMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHH-----------HHhccCcHHHHHHHhccc
Confidence 555556666688777764 3344578888888876 3445555 677899999999999864
No 84
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.49 E-value=2.5e-05 Score=77.82 Aligned_cols=337 Identities=14% Similarity=0.130 Sum_probs=208.9
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC--hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 194 (541)
++...+.+|.+.. |.++..|+...+.++.-- ......+...| ..|...|....+++.-..+.++..|..... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 4556777888887 999999998888776521 11223333344 346677777889888888888777753221 11
Q ss_pred HH-HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 195 DL-VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 195 ~~-i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
.. ---.|++|.|..+| ++....+..+....+..+|...|.... .....+.=.|+.+|.+.+.+++..|..+++.++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11 01356788888888 788899999999999999988754322 2223444457778888999999999999999874
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (541)
Q Consensus 273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (541)
.-. -.+++..|+.-|+..+-..+....-+++-++..+.. ..++|.|+.-...+ +..|+.-.+.++
T Consensus 760 aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 321 124555666666555544444444444444332211 23456666655666 777888777777
Q ss_pred HHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHH-HHHHHHHcCChHHHh
Q 009184 353 SNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE-QIKFLVIQGCIKPLC 430 (541)
Q Consensus 353 ~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~i~~L~ 430 (541)
+.+... .....+ ++. -+.|.|-+.|.+.|+--|..|...+.+++.++... ....++ .++..|.
T Consensus 825 ~fmFeyig~~s~d-----------Yvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I--HLlNllw 889 (975)
T COG5181 825 CFMFEYIGQASLD-----------YVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI--HLLNLLW 889 (975)
T ss_pred HHHHHHHHHHHHH-----------HHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH--HHHHHhh
Confidence 777652 111222 221 36788888899899999999999999998764211 011110 0122222
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 431 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 431 ~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
.-+-.+.|.++....+++..+...-.. .+ .+..+.+=.-|+...|++..-..++.++-
T Consensus 890 pNIle~sPhvi~~~~Eg~e~~~~~lg~---------g~---------~m~Yv~qGLFHPs~~VRk~ywtvyn~myv 947 (975)
T COG5181 890 PNILEPSPHVIQSFDEGMESFATVLGS---------GA---------MMKYVQQGLFHPSSTVRKRYWTVYNIMYV 947 (975)
T ss_pred hhccCCCcHHHHHHHHHHHHHHHHhcc---------HH---------HHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence 222345677777777777766543211 01 12344444578999998877666665543
No 85
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00015 Score=74.53 Aligned_cols=257 Identities=18% Similarity=0.169 Sum_probs=153.8
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 009184 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (541)
Q Consensus 123 ~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~ 202 (541)
+...+.. +-+|..|+.++..+-+-.++....+. ..+-.+|.+.++-+.-.|+.++-.+|-+.- +.+ .+-
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 3444555 77888888888888777777766443 445556777778888888888877764332 222 223
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCCh----------------------------hhhhchHHHHHHhhc
Q 009184 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF----------------------------DQVSPALPALAHLIH 253 (541)
Q Consensus 203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~----------------------------~~~~~~l~~L~~lL~ 253 (541)
...++++| .+-++==+..++.+|...|+.. +.+.. .-..-++...-.+|.
T Consensus 219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 56667766 3333333445555666666654 22211 011234555666788
Q ss_pred cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch---------------
Q 009184 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM--------------- 318 (541)
Q Consensus 254 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~--------------- 318 (541)
+.++.|...++.++.+++.... .. +++..|+.+|.+.. .++.-.+..|..++...+.
T Consensus 298 S~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD 369 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD 369 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence 8999999999999999884332 12 45677788775433 3444455555544432211
Q ss_pred --hHHH--------HHhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHH
Q 009184 319 --QTQC--------VIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIG 384 (541)
Q Consensus 319 --~~~~--------~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 384 (541)
++.. +++. .+++-+...+.+. +..+...|..+|+.++...-..- ...+.
T Consensus 370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv~----------------~tCL~ 432 (968)
T KOG1060|consen 370 PTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSVT----------------DTCLN 432 (968)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCchh----------------hHHHH
Confidence 1100 0111 1233344445555 55677777788887776322222 24667
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhccCCCHHH
Q 009184 385 PLVALLENAEFDIKKEAAWAISNATSGGTHEQ 416 (541)
Q Consensus 385 ~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~ 416 (541)
.|+.++++.+..|..+++..|..++.....++
T Consensus 433 gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 433 GLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence 88999999999999999999999988644444
No 86
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=7e-05 Score=79.21 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=168.0
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009184 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (541)
Q Consensus 203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 282 (541)
++.+-.+. .+.+..++...+..+..+.--.+ ....+...+|.+...++..++.|+.+..|.+..+-...+..-...+
T Consensus 400 lp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 400 LPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 33333333 55556666555555544433222 2234567788888899999999999999888665443332222244
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCh
Q 009184 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNR 360 (541)
Q Consensus 283 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~ 360 (541)
....++.+..+-....+.++...+..+-.++.... ..+++...-+.+...+.+. ...+++.|+..+.-++. |..
T Consensus 477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~ 552 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSE 552 (759)
T ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcc
Confidence 45677888888777789999999988887775333 2344445556666667666 77899999988888876 333
Q ss_pred HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHH
Q 009184 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 440 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 440 (541)
..+. ..++.++.....++...|...+.++.-++.....+ +....+++.+.++..++.+++
T Consensus 553 w~~~----------------~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~vanV 612 (759)
T KOG0211|consen 553 WARL----------------EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVANV 612 (759)
T ss_pred hhHH----------------HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCchhh
Confidence 3333 46777777776667888888888888776533222 234457889999999999999
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHH
Q 009184 441 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 499 (541)
Q Consensus 441 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~ 499 (541)
+..+++.|..+...-.... .+......++.|...++.+++.+|..
T Consensus 613 R~nvak~L~~i~~~L~~~~--------------~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 613 RINVAKHLPKILKLLDESV--------------RDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred hhhHHHHHHHHHhhcchHH--------------HHHHHHHHHHHhccCcccchhHHHHH
Confidence 9999999988886543221 11223455566666666666655533
No 87
>PF05536 Neurochondrin: Neurochondrin
Probab=98.38 E-value=0.00055 Score=71.17 Aligned_cols=236 Identities=19% Similarity=0.153 Sum_probs=162.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc--HHHHHhcCCHHHHHHhhcCCC------cHHHHHHHHHHHHHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNI 144 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~i~~g~i~~Lv~lL~~~~------~~~i~~~a~~~L~~l 144 (541)
+.+.+.+..|++.+.+.++.|+-.+.+++...+... .+.+.+.=..+.|-.+|.++. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 367888999999888899999999999987642222 234666656777888888732 256788889999999
Q ss_pred hcCChhHH--HHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHH
Q 009184 145 ASGTSEHT--KVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221 (541)
Q Consensus 145 ~~~~~~~~--~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~ 221 (541)
+. .++.. ..++ +-||.|+..+...+. .+...|+.+|..++ ..++.+..+++.|.++.|...+.+ .+.....
T Consensus 85 ~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~ 158 (543)
T PF05536_consen 85 CR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEI 158 (543)
T ss_pred cC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence 88 34443 2233 468999999988666 99999999999999 455578888999999999999944 5566788
Q ss_pred HHHHHHhhhcCCCCC----ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHH-HHHHHH----hCcHHHHHH
Q 009184 222 ATWTLSNFCRGKPQP----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVFPRLAE 292 (541)
Q Consensus 222 a~~~L~~l~~~~~~~----~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~-~~~~~~----~g~l~~L~~ 292 (541)
++.++.+++...... .......+++.+...+...........|..|..+....+.. ...... ..+...+..
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 888888877654321 12223455666777776666777788888888876554211 111111 133444555
Q ss_pred hhCC-CChhhHHHHHHHHhHhhc
Q 009184 293 FLMH-PSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 293 lL~~-~~~~v~~~al~~L~nl~~ 314 (541)
+|++ ..+.-|.+++...+.+..
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Confidence 5644 346667777777666654
No 88
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=3.3e-06 Score=82.57 Aligned_cols=281 Identities=17% Similarity=0.248 Sum_probs=185.6
Q ss_pred HHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009184 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (541)
Q Consensus 112 ~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 191 (541)
+.+..+.+.|+++|+.++ ..+..-+...++|..-..+.-+..+++.|++..|+.++.+.+..++....|.+..+..++.
T Consensus 427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 345678999999999887 7788888889999988778888889999999999999999899999999999999986554
Q ss_pred hh-HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC-C-Chhhh------hchHHHHHHhhccCChhHHHH
Q 009184 192 RC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P-PFDQV------SPALPALAHLIHSNDDEVLTD 262 (541)
Q Consensus 192 ~~-r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~-~~~~~------~~~l~~L~~lL~~~d~~v~~~ 262 (541)
+. +-..+..-++..++... .++.-.++..++.+|.|+.-+... . ..... .-+...+++.+...++-....
T Consensus 506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 32 22344444688888888 788899999999999999864321 1 11111 224455666677777666666
Q ss_pred HHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC-----------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchH
Q 009184 263 ACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH-----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (541)
Q Consensus 263 a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~-----------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 330 (541)
.|..|.+++..++...+.+.+. .++..+..+|.. ....+..+-.....++....+.....+.-. |
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p 661 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P 661 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence 7888888876655554544443 455555444411 112233333334444443322222111100 1
Q ss_pred HHHHhh--cCCCchhHHHHHHHHHHHHhc---CCh------HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184 331 CLLNLL--SGNYKKSIKKEACWTVSNITA---GNR------EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK 399 (541)
Q Consensus 331 ~L~~lL--~~~~~~~v~~~a~~~L~nl~~---~~~------~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 399 (541)
.+-.+= ....+.++-.+..|.+.|+.- +.. +.++ .+.+.|+-+.|..+-..+++.||.
T Consensus 662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~-----------iL~~~G~~e~l~k~q~~~Sl~vre 730 (743)
T COG5369 662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQ-----------ILCANGIREWLVKIQAKDSLIVRE 730 (743)
T ss_pred CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHH-----------HHHHccHHHHHHHHhccCcHHHHH
Confidence 111111 111145677888898888653 222 4455 667777777777777777889999
Q ss_pred HHHHHHHHh
Q 009184 400 EAAWAISNA 408 (541)
Q Consensus 400 ~a~~aL~nl 408 (541)
.+-.+|.++
T Consensus 731 k~~taL~~l 739 (743)
T COG5369 731 KIGTALENL 739 (743)
T ss_pred HHHHHHHhh
Confidence 999999886
No 89
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.00022 Score=65.99 Aligned_cols=300 Identities=14% Similarity=0.125 Sum_probs=197.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHH--HHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF--VEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~L--v~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
+.++.++..+..+|.++...|...+..+... ......+..+.....+ .++-...+ .-.+......+..|.+-+++
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence 5678888999988999999999999888654 4455566666555443 33333344 67788899999999999999
Q ss_pred HHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHh
Q 009184 151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSN 228 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-~~~~~~~~a~~~L~~ 228 (541)
....+-..|.+..|..-|.. .+.-++..++.....++...- .|+.+.+.|.+..+.+++... +++--.-.++.....
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999888877 777788888888888875433 577888889999999988432 233323334444444
Q ss_pred hhcCCCCC--Chh----hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCc--HHHHHHhh-CCCCh
Q 009184 229 FCRGKPQP--PFD----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--FPRLAEFL-MHPSP 299 (541)
Q Consensus 229 l~~~~~~~--~~~----~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~--l~~L~~lL-~~~~~ 299 (541)
+....... ... ...-.+.....++..+|+..+..+..+++.+..+... .+.+.+.|- ..+++.-. .....
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence 43332111 111 1123344456677789999999999999998765443 354555542 34444333 33334
Q ss_pred hhHHHHHHHHhHhhcCC---chh----------HHHHHh-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184 300 SVLIPALRTVGNIVTGD---DMQ----------TQCVIE-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (541)
Q Consensus 300 ~v~~~al~~L~nl~~~~---~~~----------~~~~~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (541)
.-+..++++|.+++... +++ +..+.+ ..-+..+...++.+ .++++..+..++..++...
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP 441 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP 441 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence 45677888888887532 111 111111 12345566777877 8999999999999998753
Q ss_pred hHHHHHHHhhchhhHHHHHhcCcHHHHHHH
Q 009184 360 REQIQVIMHVHAFSIIAVIEANIIGPLVAL 389 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~ 389 (541)
=.+.. .+...++++.+.+.
T Consensus 442 Walke-----------ifakeefieiVtDa 460 (524)
T KOG4413|consen 442 WALKE-----------IFAKEEFIEIVTDA 460 (524)
T ss_pred HHHHH-----------HhcCccceeeeccc
Confidence 33333 33456676666554
No 90
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00018 Score=66.19 Aligned_cols=270 Identities=16% Similarity=0.217 Sum_probs=165.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHH--hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+..+++++.+.+|.++..|+..+..+... +.+.+. +...++.+.+++.... + ...|+.+|.|++. ....+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence 46789999999999999999988877543 333332 2446888999998876 4 6789999999998 47777
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHhhcCCC-h-hhHHHHHHHH
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQLNGQP-K-LSMLRNATWT 225 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-----g~i~~Ll~~l~~~~-~-~~~~~~a~~~ 225 (541)
+.+++. .+..++..+.++...+.+..+..|+|++.+...+....... ..+..+.....+.+ + ..-..+.+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 777765 77777778777767788889999999999887665554321 13344444442322 2 1335667778
Q ss_pred HHhhhcCCCCCChhhhhchHH--HHHHhhccCChhHH-HHHHHHHHHhccCChHHHHHHHHh--CcHHHHH---------
Q 009184 226 LSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDDEVL-TDACWALSYLSDGTNDKIQAVIEA--GVFPRLA--------- 291 (541)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~l~--~L~~lL~~~d~~v~-~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L~--------- 291 (541)
++|+++....+........+| .++.+-. .+..++ ...+.+|.|+|-....... +++. .+++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence 888887754443333333222 2333333 444443 3355666666543322211 2211 2222221
Q ss_pred ------------HhhC-----CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184 292 ------------EFLM-----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (541)
Q Consensus 292 ------------~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (541)
++|. .+++.++..-+.+|--+++.. ..++.+.+.|+.+.+-.+=+...+++++ .+|.-+++
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vvq 311 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVVQ 311 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHHH
Confidence 3332 246789999999998888744 3445666666666555554444355555 45555555
Q ss_pred Hhc
Q 009184 355 ITA 357 (541)
Q Consensus 355 l~~ 357 (541)
+..
T Consensus 312 ~Lv 314 (353)
T KOG2973|consen 312 MLV 314 (353)
T ss_pred HHH
Confidence 544
No 91
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.31 E-value=0.00021 Score=71.19 Aligned_cols=241 Identities=17% Similarity=0.067 Sum_probs=152.9
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 74 ~l~~l~~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
.++.++..|. .+++.....++..+. ... .+. .+..|+..|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 4566666664 344555555444442 111 111 2677888888776 7788888888876543
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
....+.|+.+|.++++.++..++.+++..- ....+.+...| ++.++.++..++.+|..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 134577788888888888887776666521 11345677777 677888888888888877543
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
..++.|...+.+.++.|+..+++++..+.. . +.+..+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 345566677888888888888888866632 1 1223344433333333333333333332
Q ss_pred hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
+. ...++.|..+++.+ .++..++++++.+-. + ..++.|+..+..
T Consensus 237 --~~---------~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p--------------------~av~~L~~~l~d 280 (410)
T TIGR02270 237 --GG---------PDAQAWLRELLQAA---ATRREALRAVGLVGD--V--------------------EAAPWCLEAMRE 280 (410)
T ss_pred --Cc---------hhHHHHHHHHhcCh---hhHHHHHHHHHHcCC--c--------------------chHHHHHHHhcC
Confidence 11 14567788888765 389999999997643 3 245677777764
Q ss_pred CchhHHHHHHHHHHHhcc
Q 009184 393 AEFDIKKEAAWAISNATS 410 (541)
Q Consensus 393 ~~~~v~~~a~~aL~nl~~ 410 (541)
+ .++..|..++..++-
T Consensus 281 ~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 281 P--PWARLAGEAFSLITG 296 (410)
T ss_pred c--HHHHHHHHHHHHhhC
Confidence 3 499999999999875
No 92
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0017 Score=66.26 Aligned_cols=326 Identities=17% Similarity=0.154 Sum_probs=192.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
+.-+.++.|.++-...++-+--.+.-++... .+..+. ++..+.+=|.+.+ +.....|+.+++|+.+ -+.+.
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~e 145 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE 145 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence 4456677777655444444444444444321 222222 2444555566666 8888999999999876 45555
Q ss_pred HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
.+.. =|+ ++|-+ ...-++..++.+|..+.+..|. .+-..+....++.+| .+.+-.+...+...+.-++.
T Consensus 146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence 4432 134 45544 3467888899999999877664 333345678889988 66667777777778888887
Q ss_pred CCCCCChhhhhchHHHHHHhhc-------------cCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCC
Q 009184 232 GKPQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHP 297 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~-------------~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~ 297 (541)
..|.........++..|..... -+.+-+...+++.|.++-...+ .....+. .+++.++...+.+
T Consensus 217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~ 294 (938)
T KOG1077|consen 217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEP 294 (938)
T ss_pred cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccC
Confidence 6653332222223333322221 1346677788888877642222 1111122 3444555444421
Q ss_pred ----C---hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 009184 298 ----S---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370 (541)
Q Consensus 298 ----~---~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 370 (541)
+ ...+...+.-.-+++..-+.....+. ..+..|-++|.+. ...+|.-|...++.++.... .++
T Consensus 295 ~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~d------ 364 (938)
T KOG1077|consen 295 PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SID------ 364 (938)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHH------
Confidence 1 11222333333444444443332232 4567788888888 88899988888888887422 222
Q ss_pred hhhHHHHHhcCcHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184 371 AFSIIAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 444 (541)
Q Consensus 371 ~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~ 444 (541)
.+-. . ...++..|+ ..|..+|+.|+..|..++...+... ++.-+.++|...|+.+++-.
T Consensus 365 -----avK~-h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 365 -----AVKK-H-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------IVAELLQYLETADYSIREEI 424 (938)
T ss_pred -----HHHH-H-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------HHHHHHHHHhhcchHHHHHH
Confidence 2222 2 677888888 5789999999999999987554433 45567777777777766643
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.27 E-value=0.00059 Score=67.26 Aligned_cols=317 Identities=15% Similarity=0.079 Sum_probs=191.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhhcCCCCCChhh
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~ 240 (541)
+.+..++-+++.+++..+.+++..+..+... -..+.+.+.--.++.-|..+ .+..=+..|+..+..+..-... ....
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKEI 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cccC
Confidence 3344344444599999999999998877764 44555655444455555433 3444577888888888776321 2233
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 320 (541)
-.+++..++.+..+.++..+.-|+.+|+.++-.+++ .+...|++..+...+.++..++....+.++-.+...+. .+
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-tR 181 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-TR 181 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-hh
Confidence 577888999999999999999999999999977764 47888999999999987766688888888888886443 33
Q ss_pred HHHHhcCchHHHHHhhcCCC------ch--hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 321 QCVIEYQALPCLLNLLSGNY------KK--SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~------~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
+.+...--++.++.-+.+.. +. +.-..+..++..+...=+- .-++..-+...+..|+..|..
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G----------Ll~l~~~~~~~lksLv~~L~~ 251 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG----------LLYLSMNDFRGLKSLVDSLRL 251 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc----------eeeeecCCchHHHHHHHHHcC
Confidence 34443334555555444330 12 1233444445544442111 111111122578889999999
Q ss_pred CchhHHHHHHHHHHHhccCCCHHHHHHH------HHcCCh---HHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCC
Q 009184 393 AEFDIKKEAAWAISNATSGGTHEQIKFL------VIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGN 463 (541)
Q Consensus 393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l------~~~~~i---~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 463 (541)
+.+++|...+..+..+..-..+...... ...|-. ..+..-...... ....--..-.+++....
T Consensus 252 p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~-~~~~~~~~~~~l~~~y~------- 323 (371)
T PF14664_consen 252 PNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKS-ILPHRSSKRPNLVNHYL------- 323 (371)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccccc-ccCccccccccHHHHHH-------
Confidence 9999999999999999875433221111 111111 011100000000 00000000011111110
Q ss_pred CCcchhhhHhhhcchHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Q 009184 464 TDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYW 505 (541)
Q Consensus 464 ~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~i~~~a~~il~~~~ 505 (541)
......|.++|.++.|.++.... ++.+..+|.-+|.+++
T Consensus 324 ---aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 324 ---ALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred ---HHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11244566799999999997655 9999999999988765
No 94
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.25 E-value=2.3e-05 Score=62.76 Aligned_cols=153 Identities=10% Similarity=0.030 Sum_probs=120.4
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHH
Q 009184 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISN 407 (541)
Q Consensus 328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~n 407 (541)
.+..|+.-.+...+.+.+.....-|.|++.. |.... .+.+.+++..+++.+..++..++..++.+|||
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys-----------~Lrql~vLdlFvdsl~e~ne~LvefgIgglCN 84 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYS-----------HLRQLDVLDLFVDSLEEQNELLVEFGIGGLCN 84 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHH-----------HHHHhhHHHHHHHHhhcccHHHHHHhHHHHHh
Confidence 3455666565555778888888888888764 55555 88899999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc
Q 009184 408 ATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 487 (541)
Q Consensus 408 l~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~ 487 (541)
++. ++...+.+.+.+.++.++..++++...++..++.++..+...+.. ....+.....++.++....
T Consensus 85 lC~--d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-----------~r~ell~p~Vv~~v~r~~~ 151 (173)
T KOG4646|consen 85 LCL--DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-----------ERDELLSPAVVRTVQRWRE 151 (173)
T ss_pred hcc--ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-----------hhHHhccHHHHHHHHHHHH
Confidence 998 667888889999999999999998888888887777665544333 3455556677778887777
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 009184 488 HDNAEIYEKSVKLLETYW 505 (541)
Q Consensus 488 ~~~~~i~~~a~~il~~~~ 505 (541)
+..-+.+..|...++++.
T Consensus 152 s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 152 SKSHDERNLASAFLDKHV 169 (173)
T ss_pred HhhHHHHHHHHHHHHhhc
Confidence 777777888888887664
No 95
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.24 E-value=0.00082 Score=66.33 Aligned_cols=251 Identities=26% Similarity=0.296 Sum_probs=171.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
..++.+++.+.+.++.++..++..+..+-. ...++.+..++.+.+ +.++..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~--- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDED-PRVRDAAADALGELGD--P--- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence 367889999999999999999999765532 225899999999998 8999999998888754 2
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCCh-----------hhHHH
Q 009184 153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK-----------LSMLR 220 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~-----------~~~~~ 220 (541)
..++.|+.++. +++..++..+.++|+.+-.. ..+.+++..+..... ..++.
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 34788889888 58999999999999987421 136677777733221 12344
Q ss_pred HHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChh
Q 009184 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300 (541)
Q Consensus 221 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 300 (541)
.+...+..+-. ...++.+..++...+..++..+..+|+.+.... ..+.+.+...+.++++.
T Consensus 168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 44444443322 345677788888888888888888888877554 24557788888888899
Q ss_pred hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc
Q 009184 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA 380 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (541)
++..++..++.+-... .+..+...+... +..++..+...+... ...
T Consensus 229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~-------------------- 274 (335)
T COG1413 229 VRKAALLALGEIGDEE-----------AVDALAKALEDE-DVILALLAAAALGAL--DLA-------------------- 274 (335)
T ss_pred HHHHHHHHhcccCcch-----------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cch--------------------
Confidence 9999998888765422 244566666666 555554444444311 001
Q ss_pred CcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184 381 NIIGPLVALLENAEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 411 (541)
.....+...+.+....++..+..++..+...
T Consensus 275 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 275 EAALPLLLLLIDEANAVRLEAALALGQIGQE 305 (335)
T ss_pred hhHHHHHHHhhcchhhHHHHHHHHHHhhccc
Confidence 1233445555666677777777777766553
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.24 E-value=2.4e-06 Score=54.95 Aligned_cols=41 Identities=41% Similarity=0.863 Sum_probs=38.4
Q ss_pred ChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009184 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (541)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 188 (541)
+++++..+++.|++|.|+++|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999973
No 97
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.22 E-value=0.00055 Score=68.31 Aligned_cols=243 Identities=17% Similarity=0.048 Sum_probs=164.5
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
..++.|+..|....++.+...+++++..... + ..+..|+..|.+.++.++..+..+|+.+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 3578888888544437777776666543211 1 12788999999999999999999998652
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 275 (541)
.......|+..+ ++.++.++..++.++.... ....+.+..+|.+.++.++..++.+|+.+...
T Consensus 115 ---~~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 115 ---GRQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred ---chHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 122466778888 7778888888886666521 22356788888899999999999999887632
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (541)
Q Consensus 276 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (541)
..++.|...+.+.++.++..|+.+++.+.. + ..+..+....... .......+..++...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence 345667778899999999999999977643 2 1233445433333 333333333333333
Q ss_pred hcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC
Q 009184 356 TAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 435 (541)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 435 (541)
+.+ .+++.|..++.++ .++..++++++.+-.. ..++.|+..++.
T Consensus 237 --~~~--------------------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p------------~av~~L~~~l~d 280 (410)
T TIGR02270 237 --GGP--------------------DAQAWLRELLQAA--ATRREALRAVGLVGDV------------EAAPWCLEAMRE 280 (410)
T ss_pred --Cch--------------------hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc------------chHHHHHHHhcC
Confidence 222 2456677777654 4999999999977442 256777777763
Q ss_pred CChHHHHHHHHHHHHHHH
Q 009184 436 PDPRIVTVCLEGLENILK 453 (541)
Q Consensus 436 ~~~~~~~~~l~~L~~l~~ 453 (541)
+.+...+-+++..|.=
T Consensus 281 --~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 281 --PPWARLAGEAFSLITG 296 (410)
T ss_pred --cHHHHHHHHHHHHhhC
Confidence 3488888888888863
No 98
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0033 Score=64.21 Aligned_cols=338 Identities=18% Similarity=0.154 Sum_probs=199.0
Q ss_pred HHHHHHhhcCCCcHH--HHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 118 VPRFVEFLLREDYPQ--LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~--i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
...-+++|+++..++ +-+-.+.+|. ..+.+..+.+ +..+..=|.+.++.....|+.+++|+-+.. ++.
T Consensus 76 hmEaV~LLss~kysEKqIGYl~is~L~---n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~re--~~e 145 (938)
T KOG1077|consen 76 HMEAVNLLSSNKYSEKQIGYLFISLLL---NENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSRE--MAE 145 (938)
T ss_pred hHHHHHHhhcCCccHHHHhHHHHHHHH---hcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHH
Confidence 334577787765332 3333333333 3344444443 345666677788888899999999985322 333
Q ss_pred HHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 196 LVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
.+.. -++ ++|.. +...-+++.++.+|..|.+..| +.....+-...++++|...+..+...+...+-.++...
T Consensus 146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp--Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~ 218 (938)
T KOG1077|consen 146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP--DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN 218 (938)
T ss_pred Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc--cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC
Confidence 3222 234 44433 3445678888888888888743 33344567788999998888888888888888887665
Q ss_pred hHHHHHHHHhCcHHHHHHhh---C----------CCChhhHHHHHHHHhHhhcCCchhH-HHHHhcCchHHHHHhhcCCC
Q 009184 275 NDKIQAVIEAGVFPRLAEFL---M----------HPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNY 340 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL---~----------~~~~~v~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~ 340 (541)
++.....+. ..+..|..+. . -+.|-+....+++|.++-...+... ..+. .+++.++...+...
T Consensus 219 p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 219 PESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPP 295 (938)
T ss_pred CHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCc
Confidence 543331111 1122222221 1 1456678888898888844333222 1221 23444444444211
Q ss_pred ------chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCH
Q 009184 341 ------KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 414 (541)
Q Consensus 341 ------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 414 (541)
+...+...++-..+++.+-...-. .+. ..+..|..++.+.+..+|--|+..++.++....
T Consensus 296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~-----------ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~- 361 (938)
T KOG1077|consen 296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPE-----------LLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEF- 361 (938)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHcCCcHH-----------HHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccc-
Confidence 123334444555555552111111 111 367788899999999999999999999988632
Q ss_pred HHHHHHHHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHH
Q 009184 415 EQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI 493 (541)
Q Consensus 415 ~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i 493 (541)
.... +... .+.++..|+ ..|..++..+++.|+.+.+.+.-. .|- .+.++.|+....+-.+++
T Consensus 362 -s~da-vK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak-------------~IV-~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 362 -SIDA-VKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK-------------QIV-AELLQYLETADYSIREEI 424 (938)
T ss_pred -hHHH-HHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH-------------HHH-HHHHHHHhhcchHHHHHH
Confidence 2222 2222 677788888 689999999999999988754321 111 344556665555555666
Q ss_pred HHHHHHHHHHhCC
Q 009184 494 YEKSVKLLETYWL 506 (541)
Q Consensus 494 ~~~a~~il~~~~~ 506 (541)
.-++.-+-++|-.
T Consensus 425 vlKvAILaEKyAt 437 (938)
T KOG1077|consen 425 VLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhcC
Confidence 6666666666643
No 99
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.14 E-value=2.6e-05 Score=62.38 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=99.1
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
+.+..|+.-.....+.+.+++...-|.|++. +|.+-..+.+..++..++.-|..++..+.+.++..|+|+|-+.. ..+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 3466666666655558999999999999998 57788888899999999999999999999999999999998876 677
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
.+.+.++++.++..+ .++...+...++.++..|+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 888999999999998 7788888899999999998876
No 100
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.14 E-value=4.6e-06 Score=53.65 Aligned_cols=40 Identities=28% Similarity=0.574 Sum_probs=36.8
Q ss_pred chhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
+++.+.+++.|+++.|+.+|.+. ++.++++|+|+|+||++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 46678899999999999999988 99999999999999974
No 101
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=5.4e-05 Score=76.19 Aligned_cols=221 Identities=15% Similarity=0.153 Sum_probs=142.2
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHH---HHHHhhhcCC---CCCC
Q 009184 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGK---PQPP 237 (541)
Q Consensus 164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~---~~L~~l~~~~---~~~~ 237 (541)
|..+..+.+..++.+|+.+|..+.... +..+. ......+.+ .+.+..++..|+ |++.|.+-.. ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 555666666777777777766665422 12222 234455666 777888888775 5555555221 1112
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC--
Q 009184 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-- 315 (541)
Q Consensus 238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~-- 315 (541)
......++..+...+..-+..|+..|..+|+.+-..+.+.++..++..++..+-.--... -+-..+..=|..++|
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCcc
Confidence 223345566677777777888999999999988877777766666655544222111000 011122222222221
Q ss_pred ---------CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184 316 ---------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386 (541)
Q Consensus 316 ---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L 386 (541)
.++....++.+|..-.++.-|.+. -.+||.+|...++.++..++.... ..+..|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~----------------~aldfL 415 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV----------------RALDFL 415 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH----------------HHHHHH
Confidence 223345678889888999999887 789999999999999987666544 356788
Q ss_pred HHHhhcCchhHHHHHHHHHHHhccC
Q 009184 387 VALLENAEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 387 ~~~l~~~~~~v~~~a~~aL~nl~~~ 411 (541)
++++.++...||..|+.+|..++..
T Consensus 416 vDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 416 VDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999988889999999999988764
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00018 Score=72.63 Aligned_cols=272 Identities=13% Similarity=0.106 Sum_probs=164.8
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH---HhccCCh--HHHHH
Q 009184 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTN--DKIQA 280 (541)
Q Consensus 206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~l~~~~~--~~~~~ 280 (541)
+..+. .+.+..++..|+..+..|..+. .....+....++++..++..|+..|+..+. +..-.+. +....
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 6777888888888888777643 122445667788888888999988855554 4441111 11111
Q ss_pred HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH--hcC
Q 009184 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI--TAG 358 (541)
Q Consensus 281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~~ 358 (541)
-....++..++..+.+.++.+|..|..+||.+-.-+++.....++..++..+-..=... +......++- ++|
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSsG 350 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSSG 350 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCcccC
Confidence 12225788899999999999999999999999887777666666554444332221111 1111111111 111
Q ss_pred ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCCh
Q 009184 359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP 438 (541)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~ 438 (541)
..-.-....+..+-....++..|.--.++.-++++=.+||..|...++.|+.. .|.... ..++.|+++++++..
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~-----~aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAV-----RALDFLVDMFNDEIE 424 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHH-----HHHHHHHHHhccHHH
Confidence 10000000000111112677888888889888888899999999999999985 333322 267899999999999
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcc--hHHHHHHH---hcCCCHHHHHHHHH
Q 009184 439 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE--GLEKIESL---QTHDNAEIYEKSVK 499 (541)
Q Consensus 439 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~l~~L---~~~~~~~i~~~a~~ 499 (541)
.++..++.+|..|.....-... ..+.+...+++.. .-+.+.+| ..-++.+..+.+..
T Consensus 425 ~VRL~ai~aL~~Is~~l~i~ee----ql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHLAIREE----QLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVA 486 (823)
T ss_pred HHHHHHHHHHHHHHHHheecHH----HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999988865322111 2344555555432 22223222 34455555555543
No 103
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0036 Score=66.50 Aligned_cols=360 Identities=16% Similarity=0.136 Sum_probs=207.1
Q ss_pred cCCHHHHHHhhc------CC-CcHHHHHHHHHHHHHHhcCC--hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009184 115 SGVVPRFVEFLL------RE-DYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185 (541)
Q Consensus 115 ~g~i~~Lv~lL~------~~-~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 185 (541)
.++++.+++.++ .+ +++.-+..|+++++++++-- ...-+..++.-+++.+.-.++++.--+|..|+|.++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 345777777777 22 24667788888988888511 1111222333345666667788899999999999999
Q ss_pred hhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC---ChhhhhchHHHHHHhhccCChhHHHH
Q 009184 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP---PFDQVSPALPALAHLIHSNDDEVLTD 262 (541)
Q Consensus 186 l~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~lL~~~d~~v~~~ 262 (541)
++.-.- .+...-..++....+.|..+.+..++..|+.+|..+..+.+.. -...+.+.++.|+++.+.-+.+.+..
T Consensus 489 ~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 984332 2222223357777788866888899999999999998876433 22344666677777777666666666
Q ss_pred HHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC---CCh---hhHHHHHHHHhHhhc---CCchhH--HHHHhcCchH
Q 009184 263 ACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PSP---SVLIPALRTVGNIVT---GDDMQT--QCVIEYQALP 330 (541)
Q Consensus 263 a~~~L-~~l~~~~~~~~~~~~~~g~l~~L~~lL~~---~~~---~v~~~al~~L~nl~~---~~~~~~--~~~~~~~~l~ 330 (541)
++..+ +..+..-......++ ..+...+.+++.. .++ .-...|.++|..+.+ .-+... -.-++..+++
T Consensus 567 vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55544 222221111111111 1445556666653 222 223334444433322 111111 1123445677
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
.+-.+|++. -.++-.+++..+.+++...++.-- .++ |+++.+.+.+.....+.-....-+|.|++.
T Consensus 646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp-----------~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 646 VIGFILKND-ITDFYEELLEIVSSLTFLSKEISP-----------IMW--GLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCH-----------HHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 777778777 777888888888888764433211 222 578888999888888999999999999998
Q ss_pred CCCHHHHHHHH-HcCChHHHhhhcCC---CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh
Q 009184 411 GGTHEQIKFLV-IQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ 486 (541)
Q Consensus 411 ~~~~~~~~~l~-~~~~i~~L~~lL~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~ 486 (541)
.|.+...+.-. .+-+...+..++.+ .|.+ .+.+++.+..++-.... ....+...+.+ ..+..++
T Consensus 712 ~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d-~~~a~kLle~iiL~~kg-------~~dq~iplf~~----~a~~~l~ 779 (1010)
T KOG1991|consen 712 YGTPSLLSNPDYLQILLEIIKKVLTSENGEDSD-CESACKLLEVIILNCKG-------LLDQYIPLFLE----LALSRLT 779 (1010)
T ss_pred eCchhhhccchHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHhcC-------cHhhHhHHHHH----HHHHHHh
Confidence 87654322210 11123333444544 2333 44566777776543222 11223444432 2344444
Q ss_pred c-CCCHHHHHHHHHHHHH
Q 009184 487 T-HDNAEIYEKSVKLLET 503 (541)
Q Consensus 487 ~-~~~~~i~~~a~~il~~ 503 (541)
. ..+...+..+.+++-.
T Consensus 780 ~~~e~s~~~~~~leVvin 797 (1010)
T KOG1991|consen 780 REVETSELRVMLLEVVIN 797 (1010)
T ss_pred ccccchHHHHHHHHHHHH
Confidence 3 5666667777664433
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.10 E-value=0.0013 Score=66.92 Aligned_cols=256 Identities=16% Similarity=0.135 Sum_probs=167.2
Q ss_pred CCcHHHHHhcCCHHHHHHhh---------cCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCC-----
Q 009184 106 SPPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----- 171 (541)
Q Consensus 106 ~~~~~~~i~~g~i~~Lv~lL---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----- 171 (541)
....+.+.....+..|..+- ....++.+..+|+.||+|+...++..+..+++.|..+.++..|+..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 33455555555566666655 3333489999999999999999999999999999999999999875
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhc-CChHHHHHhhc---------CC-------ChhhHHHHHHHHHHhhhcCCC
Q 009184 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPLLAQLN---------GQ-------PKLSMLRNATWTLSNFCRGKP 234 (541)
Q Consensus 172 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-g~i~~Ll~~l~---------~~-------~~~~~~~~a~~~L~~l~~~~~ 234 (541)
+.++.-...+.|.-++...+..+..+.+. +++..+...|. .. .+......++.++.|+....+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 67888888888888887777777666644 56666666552 01 245567788888999987764
Q ss_pred CCChhhh----hchHHHHHHhh---cc--CChhHHHHHHHHHHHhccCChHHH-----------HHHHHhCcHHHHHHhh
Q 009184 235 QPPFDQV----SPALPALAHLI---HS--NDDEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVFPRLAEFL 294 (541)
Q Consensus 235 ~~~~~~~----~~~l~~L~~lL---~~--~d~~v~~~a~~~L~~l~~~~~~~~-----------~~~~~~g~l~~L~~lL 294 (541)
....... ..++..+..++ .+ +.......+..+|.++--...... ........+..|+.+|
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L 251 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL 251 (446)
T ss_pred cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence 4332222 33444444442 11 124456777777777632111110 0011123456666665
Q ss_pred CC-----C---ChhhHHHHHHHHhHhhcCCchhHHHHH----------------hcCchHHHHHhhcCCCchhHHHHHHH
Q 009184 295 MH-----P---SPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSGNYKKSIKKEACW 350 (541)
Q Consensus 295 ~~-----~---~~~v~~~al~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~~~~v~~~a~~ 350 (541)
.. . -.....+.+.+|.+++......++.+. ...+-..|++++.+. .+.++..+..
T Consensus 252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae 330 (446)
T PF10165_consen 252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE 330 (446)
T ss_pred HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence 32 1 135778889999999887654443332 234567789999998 6999999999
Q ss_pred HHHHHhcCChHH
Q 009184 351 TVSNITAGNREQ 362 (541)
Q Consensus 351 ~L~nl~~~~~~~ 362 (541)
.+..+|..+...
T Consensus 331 llf~Lc~~d~~~ 342 (446)
T PF10165_consen 331 LLFVLCKEDASR 342 (446)
T ss_pred HHHHHHhhhHHH
Confidence 888888755543
No 105
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.06 E-value=0.00025 Score=65.41 Aligned_cols=224 Identities=15% Similarity=0.181 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHH
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPL 206 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-~g~i~~L 206 (541)
+-.+.-|+.|+.++.. .++.|..... ...-..++.++++ ...+++-..+.+++-+..... +.+.+-. ...+.-+
T Consensus 163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dl 240 (432)
T COG5231 163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence 6678889999999988 4777766653 3344667777766 557888899999888875443 4433221 2246666
Q ss_pred HHhhcCCChhhHHHHHHHHHHhhhcCCCCCCh--hhhhc-hHHHHHHhhc--cCChhHHHHHHHHHHHhccCCh------
Q 009184 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF--DQVSP-ALPALAHLIH--SNDDEVLTDACWALSYLSDGTN------ 275 (541)
Q Consensus 207 l~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~-~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~------ 275 (541)
+.+......+.+.+.++.++.|++...|.... ....+ +.+..-.++. ..|++++.+.-..=..+.....
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 77776667788999999999999985543322 12233 3333333332 3456655443332222221110
Q ss_pred ------------------------HHHHHHHHh--CcHHHHHHhhCCCChh-hHHHHHHHHhHhhcCCchhHHHHHhcCc
Q 009184 276 ------------------------DKIQAVIEA--GVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (541)
Q Consensus 276 ------------------------~~~~~~~~~--g~l~~L~~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~~~~~~~ 328 (541)
.+...+.+. .++..|..+++..++. ...-||.-|+.++...++....+...|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 122223322 4677888888887666 6677899999999999988888889999
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 329 LPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
=..++.++.++ +++|+-+|..++-.+..
T Consensus 401 k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 401 KEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 99999999999 99999999998876653
No 106
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.05 E-value=0.00086 Score=66.11 Aligned_cols=238 Identities=16% Similarity=0.131 Sum_probs=170.4
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCCchh
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQ 319 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~ 319 (541)
....+.+..++-+++.+++..+.+++.++..+.. ..+.+.+.++--.++.-|..+ +..-+..|++.+..+.......
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 4455555556666669999999999999986655 456677778766777777543 3456789999998887653221
Q ss_pred HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK 399 (541)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 399 (541)
..+..+++..++.+..+. ++..+..|..+|+.++..+|+ .+...|++..|++.+.++..++..
T Consensus 103 --~~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~--------------lv~~~gG~~~L~~~l~d~~~~~~~ 165 (371)
T PF14664_consen 103 --KEIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE--------------LVAECGGIRVLLRALIDGSFSISE 165 (371)
T ss_pred --ccCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH--------------HHHHcCCHHHHHHHHHhccHhHHH
Confidence 123567888999999998 889999999999999998787 556889999999999887777888
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHc----CChHHHhhhc---CCCCh--HHHHHHHHHHHHHHHhhHhhhhcCCCCcchhh
Q 009184 400 EAAWAISNATSGGTHEQIKFLVIQ----GCIKPLCDLL---VCPDP--RIVTVCLEGLENILKVGEAEKNLGNTDVNVFT 470 (541)
Q Consensus 400 ~a~~aL~nl~~~~~~~~~~~l~~~----~~i~~L~~lL---~~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 470 (541)
..+.++..+.. .|..++++... .++.++.+.- ...+. +....+-.++..+++..+..- .
T Consensus 166 ~l~~~lL~lLd--~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl----------~ 233 (371)
T PF14664_consen 166 SLLDTLLYLLD--SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL----------Y 233 (371)
T ss_pred HHHHHHHHHhC--CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee----------e
Confidence 99999999987 45556665432 2244444441 11222 355566678888887554321 1
Q ss_pred hHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 009184 471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 471 ~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~ 509 (541)
-...+..+++.|......+++++++....++-..|.-..
T Consensus 234 l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 234 LSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred eecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 112334577888888889999999999998888886544
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.004 Score=65.69 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=110.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.++.+++.+.+.|.+++.-.-..+...... .| +.++- .++.+.+=+++++ +.+|..|++.++.+=. ++...
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~--~P--~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~ 126 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKL--KP--ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG 126 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--CH--HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence 567888888888888888888888888765 33 22221 3778888889998 9999999999988754 33332
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
.+++.+.+++.++++.+|..|+.++.++-.-++. .+.+.|.+..+..++ .++++.+..+|+.++..+...
T Consensus 127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 3578899999999999999999999999866553 455666666666666 889999999999999998766
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.03 E-value=0.00019 Score=77.10 Aligned_cols=268 Identities=15% Similarity=0.148 Sum_probs=175.7
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC---Chh
Q 009184 75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG---TSE 150 (541)
Q Consensus 75 l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~---~~~ 150 (541)
++.+...++. ...+.+..|+..|..+...... +..=..++|-++.++.++. .++|..|+..|+.+... -+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4555556654 5677889999999888654211 1222447999999999998 99999999999887652 122
Q ss_pred HHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC------------------hhh-----------HHHHHhc
Q 009184 151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS------------------PRC-----------RDLVLSQ 200 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~------------------~~~-----------r~~i~~~ 200 (541)
.-..+...-++|.|-.++.+ ....+|..-+.+|+.+|... +.. ...+..
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~- 577 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH- 577 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-
Confidence 22233334567888888877 44445554455555554211 100 001111
Q ss_pred CChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH
Q 009184 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (541)
Q Consensus 201 g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~ 280 (541)
.+...+.-|..++++-+++..+..|.-||.-.... ....-+++.|..+|...|+.++..-...+..++-.-. ..
T Consensus 578 -~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~r 651 (1431)
T KOG1240|consen 578 -TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WR 651 (1431)
T ss_pred -HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---ee
Confidence 13333333335566777888787787777542111 1123467888899988888888877777776653211 11
Q ss_pred HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
-++..++|.|.+-|.++++.+...|+.++.-++...--....+. .+++....+|-++ +.-+|..++..|..++.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 24457889999999999999999999999988865433333333 4677788899999 99999999999988876
No 109
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.0023 Score=63.82 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=87.1
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (541)
Q Consensus 206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 285 (541)
|-..+ ++.-+.+...++.+++.++... .........+..|-.+|.+.....+-.|+++|..++...+.... ++
T Consensus 269 L~~wl-s~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-vc--- 341 (898)
T COG5240 269 LNSWL-SDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-VC--- 341 (898)
T ss_pred HHHHh-cCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-ec---
Confidence 33444 5555677777888888777654 33345677888888899999888999999999999866554322 11
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (541)
Q Consensus 286 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (541)
-+-+-+++.+.+..+...|+.+| +-+|+++....++. .++.+++-+.++ -..+...|...|++.
T Consensus 342 -N~evEsLIsd~Nr~IstyAITtL--LKTGt~e~idrLv~--~I~sfvhD~SD~-FKiI~ida~rsLsl~ 405 (898)
T COG5240 342 -NKEVESLISDENRTISTYAITTL--LKTGTEETIDRLVN--LIPSFVHDMSDG-FKIIAIDALRSLSLL 405 (898)
T ss_pred -ChhHHHHhhcccccchHHHHHHH--HHcCchhhHHHHHH--HHHHHHHhhccC-ceEEeHHHHHHHHhh
Confidence 23455667777877888877776 45667766665553 233444444333 233444455555444
No 110
>PF05536 Neurochondrin: Neurochondrin
Probab=98.00 E-value=0.00085 Score=69.77 Aligned_cols=239 Identities=19% Similarity=0.172 Sum_probs=157.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHhcCChHHHHHhhcC------CChhhHHHHHHHHHHhhhc
Q 009184 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNG------QPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~i~~Ll~~l~~------~~~~~~~~~a~~~L~~l~~ 231 (541)
+...+.+|++.+.+=+-.++..+.+++...+.. +..+.+.=+..-+-++|.. .+....+.-++.+|+.+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 455677888877777777888888888655532 2235554345555556632 1346678888999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 310 (541)
...........+.+|.|+..+.+.+. ++..+++.+|..++..+. ..+.+++.|.++.|++.+.+ .+.....|+.++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 65544555668889999999987776 999999999999995544 45778999999999999977 5567888999999
Q ss_pred HhhcCCchhHHH---HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH-HHHHHhhchhhHHHHHhcCcHHHH
Q 009184 311 NIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQVIMHVHAFSIIAVIEANIIGPL 386 (541)
Q Consensus 311 nl~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~L 386 (541)
+++......... -.-..+++.+-..+... +...+-++|..|+++....+.. .. ...+ .-+-..+...+
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~---~~~~----~~W~~~l~~gl 236 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLE---SPPS----PKWLSDLRKGL 236 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccc---cCCh----hhhHHHHHHHH
Confidence 988755421100 01124556666777666 6677888999999998754211 11 0000 11122344455
Q ss_pred HHHhhcC-chhHHHHHHHHHHHhc
Q 009184 387 VALLENA-EFDIKKEAAWAISNAT 409 (541)
Q Consensus 387 ~~~l~~~-~~~v~~~a~~aL~nl~ 409 (541)
..++.+. .+.-|..++.....+.
T Consensus 237 ~~iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 237 RDILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5556553 4455555555555544
No 111
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0031 Score=61.01 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=166.7
Q ss_pred HHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC---------hhHHHHHHhCCChHH
Q 009184 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---------SEHTKVVIDHGAVPI 163 (541)
Q Consensus 93 a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~---------~~~~~~i~~~g~i~~ 163 (541)
.++.+.-++.. +.-...+++.+.++.|+++|.+.+ .++....+..|..++..+ ..-.+.+++.++++.
T Consensus 104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 34444444322 333446788999999999999998 899999999999998743 134566788899999
Q ss_pred HHHhhCCCCH------HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhhcCCC-C
Q 009184 164 FVKLLYSPSD------DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKP-Q 235 (541)
Q Consensus 164 L~~lL~~~~~------~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~-~ 235 (541)
|++.+..-+. .-...++..+-|+..-.+.+...+.+.|.+.-|+..+.. ..-......+..+++-+..+.. +
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 9998865333 334566777889888888888888888888888775533 2334556777888888777653 3
Q ss_pred CChhhhhchHHHHHHhhc----cC-----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 009184 236 PPFDQVSPALPALAHLIH----SN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (541)
Q Consensus 236 ~~~~~~~~~l~~L~~lL~----~~-----d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al 306 (541)
......-.++..++.-+. .+ ..+...+...+|+.+..... +...+++..++....-+++. ....+..++
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 322222344555544432 11 24567777778877765444 45567777777776666665 556788899
Q ss_pred HHHhHhhcCCc--hhHHHHHhcCchHHHHHhhc
Q 009184 307 RTVGNIVTGDD--MQTQCVIEYQALPCLLNLLS 337 (541)
Q Consensus 307 ~~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~ 337 (541)
++|-.+..+.+ .....+++..++..+..+.-
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 99999998877 56667778888888877765
No 112
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.96 E-value=0.018 Score=58.39 Aligned_cols=355 Identities=16% Similarity=0.137 Sum_probs=197.7
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH-
Q 009184 76 PVMVAGVWSNDS---GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH- 151 (541)
Q Consensus 76 ~~l~~~L~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~- 151 (541)
|.++..|...++ ......+.+|..+... +.+-..+-..++..+-...+...+.+....++.+|..+.....+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~---~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS---PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 556666665443 4556777888877643 333222222455555555554444677778888888876633222
Q ss_pred ----HHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---------
Q 009184 152 ----TKVVIDHGAVPIFVKLLYS-----P--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------- 211 (541)
Q Consensus 152 ----~~~i~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~--------- 211 (541)
.....+..+++.+..+... . +..+.+.+...+..+...-+.-++.- .+..+..+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence 2333344477777776532 1 25666666666666665443222211 1223333221
Q ss_pred --CC----ChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccC--ChHHHHHHH
Q 009184 212 --GQ----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG--TNDKIQAVI 282 (541)
Q Consensus 212 --~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~--~~~~~~~~~ 282 (541)
.. .......-...+++.+- +..........+..++.+.. ..++..+..++.+++.++.. .++...
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--- 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLR---KDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--- 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCC---cccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence 01 11111222223333332 22222234457777777755 44577888888888888754 222122
Q ss_pred HhCcHHHHHHhh-CCCChhhHHHHHHHHhHhh----cCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 283 EAGVFPRLAEFL-MHPSPSVLIPALRTVGNIV----TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 283 ~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
+++..+...+ .......+..++.++..++ ...+... ...+..|+.+|.+ +.+...|+..++-+..
T Consensus 229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 2334444433 3334444555554444333 2222222 2345667888865 4678888888888887
Q ss_pred CChHHHHHHHhhchhhHHHHHh----cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184 358 GNREQIQVIMHVHAFSIIAVIE----ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 433 (541)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~----~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 433 (541)
..++...+ .+++. .-.+.. ..++|.|++.....+...+...+.||.++........... --..+++.|.+-|
T Consensus 299 d~~~~l~~--~~~a~-vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL 374 (415)
T PF12460_consen 299 DSDDVLNK--ENHAN-VKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSL 374 (415)
T ss_pred CcHHhcCc--cccch-hhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHh
Confidence 63332110 00000 002222 2467888888877777799999999999998644332111 1135789999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHh
Q 009184 434 VCPDPRIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 434 ~~~~~~~~~~~l~~L~~l~~~~~~ 457 (541)
+.+|++++..++++|..++...+.
T Consensus 375 ~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 375 SLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999999876543
No 113
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.95 E-value=0.0021 Score=63.45 Aligned_cols=215 Identities=26% Similarity=0.340 Sum_probs=152.2
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
..++.+.+++.+.+ +.++..|++.++.+... -+++.+..++.+.++.++..++.+|+.+- .+
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DP---- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence 35888999999987 99999999997776541 35799999999999999999999988762 22
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCCh------------hHHHHH
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD------------EVLTDA 263 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~------------~v~~~a 263 (541)
..++.++..+..+.+..++..+.++|..+-... .+..++..+..... .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 157888888855789999999999999876542 25556666655442 233333
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchh
Q 009184 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (541)
Q Consensus 264 ~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 343 (541)
..++..+- +...++.+...+.+....++..|..+|+.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 33333322 1235667777888888888888888888887654 23456677777777 888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184 344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS 406 (541)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~ 406 (541)
+|..++.+++.+-.. . .+..+...+...+..++..+..++.
T Consensus 229 vr~~~~~~l~~~~~~--~--------------------~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 229 VRKAALLALGEIGDE--E--------------------AVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHHhcccCcc--h--------------------hHHHHHHHHhccchHHHHHHHHHhc
Confidence 888888888877432 1 2345666666666666666555554
No 114
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.95 E-value=0.00041 Score=74.65 Aligned_cols=299 Identities=16% Similarity=0.145 Sum_probs=182.6
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC---CChhh
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG---DSPRC 193 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~ 193 (541)
+++.+...+..=...+.+..|+..|..++....+.. .+ .-++|.++.++.++...+|..|+.+|..+.. +-+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 355555555544447888999999998887432221 11 2468999999999999999999999988753 33322
Q ss_pred HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 009184 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (541)
Q Consensus 194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 273 (541)
-..+...-.+|.|-.++.++....++..-+..|..|+.... .+. ....-.....++...+.+ +. .-..
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFl-e~~q~~~~~g~~n~~nse-------t~--~~~~ 567 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFL-ELTQELRQAGMLNDPNSE-------TA--PEQN 567 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHH-HHHHHHHhcccccCcccc-------cc--cccc
Confidence 22233333556666666343445556565666666664310 000 000000111122222322 00 0011
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (541)
Q Consensus 274 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (541)
.+...+.+.+ ++-..+..+|.++++-++...+..|+-|+..-... --+.-+++.|+..|.+. +..+|..-...|.
T Consensus 568 ~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 568 YNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAFFDSIV 642 (1431)
T ss_pred cchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHHHhhcc
Confidence 1222233333 45556677888888888888888888887532211 11234788999999998 9989887777777
Q ss_pred HHhc--CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhh
Q 009184 354 NITA--GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431 (541)
Q Consensus 354 nl~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~ 431 (541)
-++. |... ++..++|.|.+-|.+++.-|...|+.+|.-|+..+.- +...-..+++...-
T Consensus 643 gvsi~VG~rs----------------~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll---~K~~v~~i~~~v~P 703 (1431)
T KOG1240|consen 643 GVSIFVGWRS----------------VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL---RKPAVKDILQDVLP 703 (1431)
T ss_pred ceEEEEeeee----------------HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc---chHHHHHHHHhhhh
Confidence 6655 2111 2336789999999999999999999999999875432 22222234555666
Q ss_pred hcCCCChHHHHHHHHHHHHHHHh
Q 009184 432 LLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 432 lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
+|-.++.-++..++..|..+.+.
T Consensus 704 lL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 704 LLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred heeCchHHHHHHHHHHHHHHHhh
Confidence 77788888888888887777653
No 115
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.012 Score=58.90 Aligned_cols=242 Identities=16% Similarity=0.133 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC---cHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (541)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~---~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (541)
++-.|++|+-.|..+-.. +.+ +...+++.+..+. +.......+++...+...+++.+..+ .|
T Consensus 203 ~~isqYHalGlLyq~kr~------dkm----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rp 267 (898)
T COG5240 203 NPISQYHALGLLYQSKRT------DKM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RP 267 (898)
T ss_pred ChHHHHHHHHHHHHHhcc------cHH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HH
Confidence 455666666666654221 111 1233444444332 12333344455555555556555544 36
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhh
Q 009184 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (541)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 242 (541)
.|-..+++.-+.+.-.++++++.++...- .+..+.. .+..|-.+| +++....+-.|+.+|..|+...|... .
T Consensus 268 fL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~~-~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv----~ 339 (898)
T COG5240 268 FLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVDQ-TVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV----S 339 (898)
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHHH-HHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee----e
Confidence 67777877667777778888887774431 1222222 344455555 77788889999999999998765432 2
Q ss_pred chHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHH
Q 009184 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (541)
Q Consensus 243 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~ 322 (541)
-+-+.+-.++.+.+..+...|+.+|.. .+.++.+..++. .++.++.=++++-..+...|++.|++..... ...
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k---~~s 412 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLFPSK---KLS 412 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhCcHH---HHH
Confidence 233445556666677777776666533 345555554432 3444444444444556666777776654321 111
Q ss_pred HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH
Q 009184 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362 (541)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 362 (541)
.+..|...|......+.++.+..+++.+....|+-
T Consensus 413 -----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s 447 (898)
T COG5240 413 -----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS 447 (898)
T ss_pred -----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH
Confidence 23445555444335667777777777776654443
No 116
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.92 E-value=0.0021 Score=59.57 Aligned_cols=234 Identities=17% Similarity=0.170 Sum_probs=150.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHhhcCC-ChhhHHHHHHHHHHhhhcCCCCC-Chhh
Q 009184 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQP-PFDQ 240 (541)
Q Consensus 164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-~g~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~-~~~~ 240 (541)
|-++++.-++-.+-.|+.++.++..... .|+.+.. ...-..++.++... .+.+++.+.+.+++.|+.+.... ....
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K 232 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3344444456677888999999986655 6666553 33445666666433 45788999999999998775222 2222
Q ss_pred hhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCC---CChhhHHHHHHHHhHhhc-
Q 009184 241 VSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH---PSPSVLIPALRTVGNIVT- 314 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~~---~~~~v~~~al~~L~nl~~- 314 (541)
....+.-++.+.+.. .+.|..-+|..+.++++.. .+.+....-.|-+..-++.|.. .+++++...=++=..+..
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 344555566666544 5678888899999998743 2333333333434445555532 233333222111111111
Q ss_pred ----------------C----Cc---------hhHHHHH--hcCchHHHHHhhcCCCchh-HHHHHHHHHHHHhcCChHH
Q 009184 315 ----------------G----DD---------MQTQCVI--EYQALPCLLNLLSGNYKKS-IKKEACWTVSNITAGNREQ 362 (541)
Q Consensus 315 ----------------~----~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~~-v~~~a~~~L~nl~~~~~~~ 362 (541)
+ ++ ...+.+. +..++..|.++++.. .+. ...-||.-++.+.+..|+.
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~ 391 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEI 391 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchH
Confidence 0 11 1222333 235788899999988 444 5677888899999988998
Q ss_pred HHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 363 IQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 363 ~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
.. .+.+.|+=..+++++.+++++|+-+|+.|+..+..
T Consensus 392 ~~-----------vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 392 NA-----------VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HH-----------HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 87 78899999999999999999999999999987764
No 117
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=0.0026 Score=67.64 Aligned_cols=382 Identities=13% Similarity=0.096 Sum_probs=245.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009184 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (541)
Q Consensus 78 l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~ 157 (541)
.-+.-+..++.++..++.-+.++++.- ......+++++.++++..++. ..+++.|...+.++.......- ...
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d~~- 314 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-DVV- 314 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-hhh-
Confidence 333444566788888888888776542 225667889999999998887 7899999988888776321111 111
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC--C
Q 009184 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--Q 235 (541)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~--~ 235 (541)
..+.+.+++...+.+..++.........++..-.. .......+++...++ +....+.+..+..-...++.... .
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCccc
Confidence 23578888888888888887776666655432111 111222466677777 55556666665555555655442 2
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 009184 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 315 (541)
........++|.+..+..+.+..++...+.....+....+. ...+ ....+.+...+++..+.++......+..+-..
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v 467 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV 467 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhc
Confidence 22233455688888888888888888877777666533221 0011 14567777788888899999988877766655
Q ss_pred CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCch
Q 009184 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEF 395 (541)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~ 395 (541)
.+...........++.+..+-... ..+++.+..+.+-.++.... . .+.+...-+.+...+.+...
T Consensus 468 ~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~-----------~~~~~~~~~l~~~~l~d~v~ 532 (759)
T KOG0211|consen 468 NDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---V-----------EFFDEKLAELLRTWLPDHVY 532 (759)
T ss_pred cCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---h-----------HHhhHHHHHHHHhhhhhhHH
Confidence 554333444556777777777666 78899999998888876322 1 33443444555555666678
Q ss_pred hHHHHHHHHHHHhccC-CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhh
Q 009184 396 DIKKEAAWAISNATSG-GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMID 474 (541)
Q Consensus 396 ~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~ 474 (541)
.+++.|+..+..++.. |..-. ....++.+..+...++...+...+.++..|.....+. .++
T Consensus 533 ~Ir~~aa~~l~~l~~~~G~~w~-----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e---------i~~---- 594 (759)
T KOG0211|consen 533 SIREAAARNLPALVETFGSEWA-----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE---------ITC---- 594 (759)
T ss_pred HHHHHHHHHhHHHHHHhCcchh-----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH---------HHH----
Confidence 9999999988888752 21111 2234556666655556667778888888776654321 123
Q ss_pred hcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184 475 DAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 475 ~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
...+..+..+..++.+.|+-.+.+.+.++-..
T Consensus 595 -~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 595 -EDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred -HHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 33457788888899988888887777766543
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.91 E-value=0.00024 Score=65.91 Aligned_cols=187 Identities=18% Similarity=0.131 Sum_probs=121.1
Q ss_pred ccCChhHHHHHHHHHHHhccCC--hHHHHHHHHh--CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCc
Q 009184 253 HSNDDEVLTDACWALSYLSDGT--NDKIQAVIEA--GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (541)
Q Consensus 253 ~~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~ 328 (541)
.+.+.+.+..++..|..++.+. ......+.+. .++..+...+.+....+...|+.++..++........... ..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence 4568888999999998887555 2222222221 5667788888888888999999999999976665554443 467
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 408 (541)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 408 (541)
++.|+..+.++ ...++..|..+|..++...+..-. + +++.+...+.+.++.+|..++..+..+
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~------------~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPK------------I----LLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--H------------H----HHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHH------------H----HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 89999999998 888999999999999985441111 0 145677778888999999999999999
Q ss_pred ccCCC--HHHHHH-HHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184 409 TSGGT--HEQIKF-LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 409 ~~~~~--~~~~~~-l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~ 457 (541)
+.... ...... ..-..+++.+..++.+.+++++..+-.++..+....+.
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 87543 111111 01134678899999999999999999999998776554
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.90 E-value=0.00016 Score=66.96 Aligned_cols=186 Identities=17% Similarity=0.086 Sum_probs=116.3
Q ss_pred cCCCHHHHHHHHHHHHHHHccC-CCCcHHHHHh--cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 009184 83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (541)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~i~--~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g 159 (541)
.+.+++.+..|+..|+.++.+. .......+.. ..++..+...+++.. ..+...|+.++..++..-.......+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 4688999999999999998864 1122233322 145667777777776 78999999999999874433333333 24
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC-CCCh
Q 009184 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF 238 (541)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 238 (541)
++|.|+..+.+....+++.|..+|..++...+..... .+..+...+ .+.++.++..++..+..+....+ ....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 6899999999999999999999999998765511111 023333344 88899999999998888877654 1111
Q ss_pred h----hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 009184 239 D----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (541)
Q Consensus 239 ~----~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 276 (541)
. ....+++.+.+++.+.+++|+..+-.++..+....++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1 2356888899999999999999988888777544333
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.87 E-value=5e-05 Score=58.48 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=69.1
Q ss_pred HHHHHHhh-cCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 118 i~~Lv~lL-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
+|.|++.| ++++ +.++..|+++|+.+.. + .+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 5555 9999999999995532 2 24899999999999999999999999872
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~ 227 (541)
....++.|.+.+.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 22378889999966667777888888774
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.87 E-value=5.3e-05 Score=58.33 Aligned_cols=87 Identities=30% Similarity=0.484 Sum_probs=70.7
Q ss_pred HHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHH
Q 009184 245 LPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (541)
Q Consensus 245 l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 323 (541)
+|.|++.| .++++.++..++++|+.+. . ..+++.|..+++++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---D--------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---H--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---C--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 7889999999999998542 1 145889999999999999999999999883
Q ss_pred HhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (541)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (541)
+...++.|..++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23467889999988756677999999885
No 122
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.001 Score=73.45 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=111.3
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009184 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (541)
Q Consensus 203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 282 (541)
||.|.+.= .+++..++.....++..|..+...........++.-|+.-+.+....+++.+|.+|..|..+.+. ..+.
T Consensus 1000 IPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~ 1076 (1702)
T KOG0915|consen 1000 IPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQVK 1076 (1702)
T ss_pred hHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHH
Confidence 34444433 57788888888777777777654444556678888888888888999999999999999987552 1122
Q ss_pred Hh--CcHHHHHHhhCCCChhhHHH---HHHHHhHhhcCC-----chhHHHHHhcCchHHHHH--hhcCCCchhHHHHHHH
Q 009184 283 EA--GVFPRLAEFLMHPSPSVLIP---ALRTVGNIVTGD-----DMQTQCVIEYQALPCLLN--LLSGNYKKSIKKEACW 350 (541)
Q Consensus 283 ~~--g~l~~L~~lL~~~~~~v~~~---al~~L~nl~~~~-----~~~~~~~~~~~~l~~L~~--lL~~~~~~~v~~~a~~ 350 (541)
+. .+...+.+.+++-.+.+|.. ++.+|+.++..- ....+.++ ..++|.|+. ++ +. -+++|+.+..
T Consensus 1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gim-s~-v~evr~~si~ 1153 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIM-SK-VNEVRRFSIG 1153 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcc-cc-hHHHHHHHHH
Confidence 21 34445555566666777766 455666655311 11112222 134444442 23 34 6789999999
Q ss_pred HHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184 351 TVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI 397 (541)
Q Consensus 351 ~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 397 (541)
++..++......+. ... ...+|.|++.+..-++.|
T Consensus 1154 tl~dl~Kssg~~lk-----------P~~-~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELK-----------PHF-PKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred HHHHHHHhchhhhc-----------chh-hHHHHHHHHHccccchHH
Confidence 99999986666554 222 246677777666544433
No 123
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.86 E-value=2.7e-05 Score=53.89 Aligned_cols=55 Identities=24% Similarity=0.578 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184 342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 408 (541)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 408 (541)
+.+|..|+|+|++++...++..+ . ....+++.|+.+|.+++++||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~-----------~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ-----------P-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH-----------H-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH-----------H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999887777766 5 3447999999999999899999999999875
No 124
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.073 Score=57.57 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=124.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.+..+++.++..|..++-.|++.+.++.+..+..-.+. ++...++++...+++..=..|+.+|+.++...----.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 45566667778899999999999999987642222333 3455555555444345556888899998874311111
Q ss_pred HHHhCCChHHHHHhhC--------CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHH
Q 009184 154 VVIDHGAVPIFVKLLY--------SPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~--------~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~ 224 (541)
.+. .++|.+++.|. +....+|+.|+++++.+++.. +.--+.++.. ....|+-.-.-+.+..+++.|..
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHH
Confidence 111 23566665553 234789999999999988533 2211112211 12222221114667888999988
Q ss_pred HHHhhhcCCCCC----Chh-----------------------hhhchHH-HHHHh----hccCChhHHHHHHHHHHHhcc
Q 009184 225 TLSNFCRGKPQP----PFD-----------------------QVSPALP-ALAHL----IHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 225 ~L~~l~~~~~~~----~~~-----------------------~~~~~l~-~L~~l----L~~~d~~v~~~a~~~L~~l~~ 272 (541)
++-......++. ... ...+... .+-++ +.+-|..++..+.|+|..|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 887665432211 000 0011122 22223 234589999999999999886
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 009184 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (541)
Q Consensus 273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a 305 (541)
..++. ...+.++.+++.....+...+.-+
T Consensus 574 ~~pk~----~a~~~L~~lld~~ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 574 TEPKY----LADYVLPPLLDSTLSKDASMRHGV 602 (1133)
T ss_pred hhHHh----hcccchhhhhhhhcCCChHHhhhh
Confidence 55432 223556666665555554444433
No 125
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0011 Score=68.01 Aligned_cols=238 Identities=19% Similarity=0.263 Sum_probs=142.2
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
+...|.+.|++.+++.++.-++.-|+-...++... .+...|-..|..++.-.-+.|..++|-+--....
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~---- 482 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN---- 482 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----
Confidence 45566666666555666666666655555443222 1224445555555555555555555554322211
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH--HhccCC
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS--YLSDGT 274 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~--~l~~~~ 274 (541)
..++.-++..-.......+.+-..-.++-...+. ..+.=+.+-+++.+.|+-++.....++. +...++
T Consensus 483 ---~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn 552 (929)
T KOG2062|consen 483 ---QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN 552 (929)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence 0123333333333445555554443333332221 1244456677777788888877666553 322222
Q ss_pred hHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184 275 NDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (541)
. +++..|+.. .++.+.+++..|+-+||-++..++++ ++..+.+|..++++.||.-++.+|+
T Consensus 553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence 2 556677776 57788999999999999998866644 4567778877779999999999999
Q ss_pred HHhcCC--hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC
Q 009184 354 NITAGN--REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 354 nl~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 413 (541)
-.|+++ .+.+. ++++| ..++..-||+-|+.++.-+....+
T Consensus 615 IaCAGtG~~eAi~-----------------lLepl---~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 615 IACAGTGLKEAIN-----------------LLEPL---TSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hhhcCCCcHHHHH-----------------HHhhh---hcChHHHHHHHHHHHHHHHHHhcc
Confidence 999853 33332 23333 345566788888888888776543
No 126
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.013 Score=63.13 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=157.5
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCR 194 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r 194 (541)
+++..|.+.+++.+ ..++-.|+..++.++...|... . ..++...+.++.. +++..-..++.+|+.++..+--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56788888888888 8999999999999998665221 1 1234555665443 334455589999999986543221
Q ss_pred HHHHhcCChHHHHHhhcC-------CChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHH-HhhccCChhHHHHHHH
Q 009184 195 DLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALA-HLIHSNDDEVLTDACW 265 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~-------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~-~lL~~~d~~v~~~a~~ 265 (541)
..+. .+++.+++.|.. +....++..|+++++.+++.. +..-......+.+.|+ ..+-..+-.++..|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 2221 146666666621 234678999999999999886 3222222233333322 2233455667777777
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhh---CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh-hcCCCc
Q 009184 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFL---MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYK 341 (541)
Q Consensus 266 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL---~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~ 341 (541)
++....... |-+|.=++++ +.-....+..+...+..-....+.+...++++ |+.. +.+= +
T Consensus 494 AlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HW-d 557 (1133)
T KOG1943|consen 494 ALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHW-D 557 (1133)
T ss_pred HHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccc-c
Confidence 775544221 1111112222 22233445666666666666666555555442 2222 4555 8
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
..+|..++|+|.+++...++ ....+.+++++....+.+...+.-+..+.+.++.
T Consensus 558 ~~irelaa~aL~~Ls~~~pk---------------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 558 VKIRELAAYALHKLSLTEPK---------------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhHH---------------hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 89999999999998765444 3334788999998888888887766666666654
No 127
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.048 Score=60.97 Aligned_cols=318 Identities=17% Similarity=0.176 Sum_probs=181.7
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--h
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--C 193 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~ 193 (541)
.+||.|..+=-+++ +.+|..-..+...+..++....+...+ .++.-|+.-|.+....+|+.++.+|..+....+. .
T Consensus 998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 36888888866777 888887777777777765555555543 4677777778888899999999999999976652 2
Q ss_pred HHHHHhcCChHHHHHhhcCCChhhHHHH---HHHHHHhhhcCC-----CCCChhhhhchHHHHHHh-hccCChhHHHHHH
Q 009184 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRN---ATWTLSNFCRGK-----PQPPFDQVSPALPALAHL-IHSNDDEVLTDAC 264 (541)
Q Consensus 194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~---a~~~L~~l~~~~-----~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~ 264 (541)
.+.+.+ ....+.+.+ ++-.+.++.. ++.+|+.+|-.. +.........++|.|+.- +-+.-++++.-++
T Consensus 1076 ~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred HHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 222222 344455555 4444555544 455666666332 111223334455554431 1255688999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHH-HHHHHhHh------------hcCCc--hhHHHHH-----
Q 009184 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP-ALRTVGNI------------VTGDD--MQTQCVI----- 324 (541)
Q Consensus 265 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~-al~~L~nl------------~~~~~--~~~~~~~----- 324 (541)
.++..++........... ..+++.|+...+.-++.+... ++++ -|+ +.+.+ +....++
T Consensus 1153 ~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~ 1230 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDI 1230 (1702)
T ss_pred HHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH
Confidence 999999977665433221 256666666666555443322 3333 111 11111 0011111
Q ss_pred --hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHH
Q 009184 325 --EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAA 402 (541)
Q Consensus 325 --~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 402 (541)
-...+|.+.+++..+-.-..|..++..++-++..-...+. .. ....+..++..+++.+..+++.-+
T Consensus 1231 ~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-----------P~-sgKll~al~~g~~dRNesv~kafA 1298 (1702)
T KOG0915|consen 1231 SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-----------PY-SGKLLRALFPGAKDRNESVRKAFA 1298 (1702)
T ss_pred HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-----------cc-hhHHHHHHhhccccccHHHHHHHH
Confidence 1234555555555543344455555555555431111111 10 113556666667777899999999
Q ss_pred HHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184 403 WAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 403 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~ 457 (541)
.|.+.++....+++.+.+++ ..+..++...++. ...++..+.+|..+...
T Consensus 1299 sAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es~-~siscatis~Ian~s~e 1348 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIE----TLLADLLGKDESL-KSISCATISNIANYSQE 1348 (1702)
T ss_pred HHHHHHHhcCChHHHHHHHH----HHHHHHhccCCCc-cchhHHHHHHHHHhhHH
Confidence 99999998888888777654 3344444433321 14455555555554433
No 128
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.69 E-value=6e-05 Score=52.10 Aligned_cols=55 Identities=27% Similarity=0.444 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (541)
Q Consensus 299 ~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (541)
|.+|..|+++||+++...+..... ....+++.|..+|.++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 468999999999998877766655 4457899999999988 789999999999986
No 129
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.61 E-value=0.14 Score=54.46 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=127.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCCh
Q 009184 82 VWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (541)
Q Consensus 82 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i 161 (541)
+.|++...+..|++.+......+ ++ . +..+|-+++.+.+.+ .+++.-.-.-|.+++...|+..-. ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 56777778888886655444433 22 2 235778888888666 999999999999999987755433 36
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 241 (541)
+.+.+=++++++.+|..|+++++.+= .+ .++.. +++++.+.+ .++++.+++.|+.++..+-+-++. ....
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~----el~~~-~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VK----ELLGN-IIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hH----HHHHH-HHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhhc
Confidence 78888899999999999999999862 11 22222 678888888 888999999999999999876432 2233
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 273 (541)
.|.+..+..++...|+.+...|+.+|..+-..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56777788888899999999999999887644
No 130
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.61 E-value=0.014 Score=61.64 Aligned_cols=303 Identities=12% Similarity=0.068 Sum_probs=180.6
Q ss_pred CCCHHHHHHHHHHHHHHHccC-CCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184 84 SNDSGVQYECTTQFRKLLSIE-RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (541)
+..|.+...+.+.+.+..+.. .+++.. .-++...+..+.-+..+.++..|+++++..++ ++..... ..+++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~----~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL----QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH----HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHH
Confidence 455766668888888776542 112211 11345556666655557788889888888774 2222222 236778
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (541)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 241 (541)
.|+++....+.++......+|+..+.-+|+..... ++.+.|.++.+. ..+.|+.+...+-.++-.++... .......
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~ 611 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQ 611 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchH
Confidence 88888888888899999999999998888765553 444666666654 35667888888888888887743 1222344
Q ss_pred hchHHHHHHhhccCC----hhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 009184 242 SPALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~ 315 (541)
..++|.++..+..++ .....-++-.|.-+.++.+ ...+.++ .-++|.+.++. .+++......+-.||..+...
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 678999999998765 4445555555555554433 2223233 24677777765 456677888888888888876
Q ss_pred CchhHHHHHhcCc------hHHHHHhhcCCCchhHHHHHHHHHHHHhc----CChHHHHHHHhhchhhHHHHHhcCcHHH
Q 009184 316 DDMQTQCVIEYQA------LPCLLNLLSGNYKKSIKKEACWTVSNITA----GNREQIQVIMHVHAFSIIAVIEANIIGP 385 (541)
Q Consensus 316 ~~~~~~~~~~~~~------l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 385 (541)
..++...--+.++ +..+.++|. ++.-..++..+|.+.. +-+..+. ..++ .++..
T Consensus 691 ~~eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~-----------~n~d-~IL~A 754 (1005)
T KOG2274|consen 691 TLEQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELG-----------PNLD-QILRA 754 (1005)
T ss_pred CHHHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhc-----------hhHH-HHHHH
Confidence 6655433333332 333444443 3333444444444432 2222122 1111 13333
Q ss_pred HHHHh-hcCchhHHHHHHHHHHHhccCC
Q 009184 386 LVALL-ENAEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 386 L~~~l-~~~~~~v~~~a~~aL~nl~~~~ 412 (541)
++.-| ......+-+..+.+++.++...
T Consensus 755 visrmq~ae~lsviQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 755 VISRLQQAETLSVIQSLIMVFAHLVHTD 782 (1005)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhCC
Confidence 33333 3345777777777888777643
No 131
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.59 E-value=0.00048 Score=53.48 Aligned_cols=95 Identities=18% Similarity=0.336 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc
Q 009184 344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 423 (541)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 423 (541)
.|+.+.++|+.++.+-...+. ..++ .++++++..+.+++++||..|+.+|.|++.....+...++ .
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~-----------~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~ 67 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDIS-----------KYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--N 67 (97)
T ss_pred chhHHHHHHHHHHHHchHhHH-----------HHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 367788889888875444454 3333 6899999999999999999999999999875544443333 3
Q ss_pred CChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 424 GCIKPLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 424 ~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
.+.+.|+.++.++|+.|+..+ +.|.++++
T Consensus 68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 68 EIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 578899999999999977654 77777764
No 132
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.14 Score=56.10 Aligned_cols=185 Identities=16% Similarity=0.161 Sum_probs=111.4
Q ss_pred hccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCc
Q 009184 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (541)
Q Consensus 252 L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~ 328 (541)
.++.+..++..+...|..++..+.. ...... .+...|.+-+++.....+...+.+|..|....+.....++..-+
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~~s~--~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I 740 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSSPSG--EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLI 740 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455788999999999988876321 112211 33444555556667778999999999998877633333443344
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhc-------CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184 329 LPCLLNLLSGNYKKSIKKEACWTVSNITA-------GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA 401 (541)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 401 (541)
.+.++.+ +.. +...|+.|..+|..|++ ++.. .. ..++ .+++.|...+..+...+...-
T Consensus 741 ~EvIL~~-Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~-----------~~ln-efl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 741 PEVILSL-KEV-NVKARRNAFALLVFIGAIQSSLDDGNEP-AS-----------AILN-EFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred HHHHHhc-ccc-cHHHHhhHHHHHHHHHHHHhhhcccccc-hH-----------HHHH-HHHHHHHhhhcccHHHHHHHH
Confidence 4455555 655 88889999999988884 1111 00 1111 233333333333333333333
Q ss_pred HHHHHHhcc----CCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhh
Q 009184 402 AWAISNATS----GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE 458 (541)
Q Consensus 402 ~~aL~nl~~----~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~ 458 (541)
+.++..+.. ..+.+.. .++++.++.+|.+..++++..|++.+..++...+..
T Consensus 806 Ivai~~il~e~~~~ld~~~l-----~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETL-----EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHHHHHHHhccccHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 555555543 1122222 346778888899999999999999998888766553
No 133
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00063 Score=66.25 Aligned_cols=308 Identities=15% Similarity=0.094 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCChhhHHHHHhcCChHH
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-----GDSPRCRDLVLSQGGLVP 205 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~r~~i~~~g~i~~ 205 (541)
..++.++..+|..++....-.+..+++ ....+...+....+.++..+..++..+- .+.|+..+.-...|.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 357778888887777643333333322 2244444556678889998888887664 233322222122221111
Q ss_pred ------HHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 009184 206 ------LLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278 (541)
Q Consensus 206 ------Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~ 278 (541)
.-....++.....+...|.+++++.... ...+.......+-.+...-.+.+.-+...|.+++.-+.-++....
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~ 426 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ 426 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence 1112223344566777788888776543 111111111111122222222334467777777766665544433
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----Cc---hhHHHHHhcCchHHHHHhhc--CCCchhHHHHHH
Q 009184 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DD---MQTQCVIEYQALPCLLNLLS--GNYKKSIKKEAC 349 (541)
Q Consensus 279 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~---~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~ 349 (541)
....-......+...+.+..-..+..+.+++|||+.. .+ .....+... .+..++..-. +..+.+|+..+.
T Consensus 427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~nav 505 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAV 505 (728)
T ss_pred hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHH
Confidence 3333335566677777777778899999999999752 11 233333221 2222222221 222678999999
Q ss_pred HHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 009184 350 WTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 429 (541)
Q Consensus 350 ~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 429 (541)
.+|+|+..--...+. ...-.+++......+-.....+..+|+-+||++++|+..+..-.....=....+.+.|
T Consensus 506 raLgnllQvlq~i~~-------~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L 578 (728)
T KOG4535|consen 506 RALGNLLQFLQPIEK-------PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNAL 578 (728)
T ss_pred HHHhhHHHHHHHhhh-------ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHH
Confidence 999998642111100 0000111211111122222334679999999999999875321110000112345666
Q ss_pred hhhcCC-CChHHHHHHHHHH
Q 009184 430 CDLLVC-PDPRIVTVCLEGL 448 (541)
Q Consensus 430 ~~lL~~-~~~~~~~~~l~~L 448 (541)
+.++.+ .+-+++..+..+|
T Consensus 579 ~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 579 TSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred HHHHHHhccceEeehhhhhh
Confidence 666543 4445555554444
No 134
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.013 Score=56.97 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=159.8
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccC----CCC----cHHHHHhcCCHHHHHHhhcCCC-----cHHHHHHH
Q 009184 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEA 137 (541)
Q Consensus 71 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~i~~g~i~~Lv~lL~~~~-----~~~i~~~a 137 (541)
+++.++.+++.|..++.++...++..+..+...+ ... -++.+++.++++.|++.+..=+ ..+-...+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 4578999999999999999999999999886532 112 2677888999999999887533 12234556
Q ss_pred HHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc----
Q 009184 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---- 211 (541)
Q Consensus 138 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---- 211 (541)
+.++-|+..-.++....+++.|.+.-|+.-+.. +-..-...|...++-+..++.+.+...-...++..+++.+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 777888888889999999988888877764432 33445566777777777777767777777788888888873
Q ss_pred C----CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh--HHHHHHHHhC
Q 009184 212 G----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG 285 (541)
Q Consensus 212 ~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g 285 (541)
+ ....++.++...+|+.+.....+........+++...-+++. ....+..++.+|-++..+++ .....+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 124567888888888887776555555556677766666654 44567778888888776655 5666677777
Q ss_pred cHHHHHHhh
Q 009184 286 VFPRLAEFL 294 (541)
Q Consensus 286 ~l~~L~~lL 294 (541)
++..+..+.
T Consensus 362 GLrtiF~~F 370 (536)
T KOG2734|consen 362 GLRTIFPLF 370 (536)
T ss_pred hHHHHHHHH
Confidence 666666554
No 135
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.52 E-value=0.076 Score=53.94 Aligned_cols=303 Identities=16% Similarity=0.129 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHHHHccCCCC----cHHHHHhcCCHHHHHHhhcCCC------cHHHHHHHHHHHHHHhcCChhHH-HH
Q 009184 86 DSGVQYECTTQFRKLLSIERSP----PIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASGTSEHT-KV 154 (541)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~----~~~~~i~~g~i~~Lv~lL~~~~------~~~i~~~a~~~L~~l~~~~~~~~-~~ 154 (541)
+.......+..+.+++...... ......+..++|.+.++..... ++.+...+..++..+...-+... +.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566677777777776643222 2334445568888888764321 14555666666666665433332 22
Q ss_pred HHhCCChHHHHH-----hhC-CCC--HHHHHHHHHHH-HHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184 155 VIDHGAVPIFVK-----LLY-SPS--DDVREQAVWAL-GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (541)
Q Consensus 155 i~~~g~i~~L~~-----lL~-~~~--~~v~~~a~~~L-~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~ 225 (541)
+++ .+...+.. -+. ..+ ..........+ +-+++-++.+.-. -....+..++.+.....++..+..++.+
T Consensus 136 ~~~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 213 (415)
T PF12460_consen 136 ILD-ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQL 213 (415)
T ss_pred HHH-HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 221 12222220 000 000 11112222222 2222222222111 1112566677776666777888888888
Q ss_pred HHhhhcCCCCCChhhhhchHHHHHHhh-ccC----ChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhhCCCCh
Q 009184 226 LSNFCRGKPQPPFDQVSPALPALAHLI-HSN----DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLMHPSP 299 (541)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~----d~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 299 (541)
++.+.-.-+... .....+..+...+ ... ......-..|...-+. ++++.. . .++..|+.++.+ +
T Consensus 214 la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~lL~~--~ 283 (415)
T PF12460_consen 214 LASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLELLSS--P 283 (415)
T ss_pred HHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHHHhCC--h
Confidence 887775532222 3344555554444 222 2334455556665554 333322 1 356778888877 5
Q ss_pred hhHHHHHHHHhHhhcCCchh--------HHHHHhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184 300 SVLIPALRTVGNIVTGDDMQ--------TQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM 367 (541)
Q Consensus 300 ~v~~~al~~L~nl~~~~~~~--------~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 367 (541)
.+...+.+.++-+....+.. .+.+... .++|.|+...... +...+.....+|+++..+-|..+-
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl--- 359 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL--- 359 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH---
Confidence 57888888888888763321 2222222 3566666666666 556888889999999997665443
Q ss_pred hhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184 368 HVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 368 ~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 412 (541)
.---..++|.|++.|..++.+++..++.+|..++...
T Consensus 360 --------~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 360 --------LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred --------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 2222369999999999999999999999999998854
No 136
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.13 Score=55.36 Aligned_cols=383 Identities=14% Similarity=0.096 Sum_probs=207.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh--C
Q 009184 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--H 158 (541)
Q Consensus 81 ~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~ 158 (541)
.++|+.--.+-.||+.+..+.+..-..+. .-..++....+.|..++.-.++.+|+.+|..+.+..+.....+.. .
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~---~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp 546 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPN---NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVP 546 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChH---HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhh
Confidence 44565667888899999998754311111 113345666667774444789999999999998855444333322 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHH-HHHHHhhCCChhhHHHHHhcCChHHHHHhhcC----C-ChhhHHHHHHHHHHhh---
Q 009184 159 GAVPIFVKLLYSPSDDVREQAV-WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----Q-PKLSMLRNATWTLSNF--- 229 (541)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~-~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~----~-~~~~~~~~a~~~L~~l--- 229 (541)
+.+..|+.+.+.-+.+....++ ..++..+..-.++...+.. .....+++++.. + .+.+=.-.|..+|..+
T Consensus 547 ~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Ti 625 (1010)
T KOG1991|consen 547 PIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTI 625 (1010)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Confidence 4455666666553333333333 3344444333333333322 256667777742 1 1122223333333332
Q ss_pred hcCC---CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 009184 230 CRGK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (541)
Q Consensus 230 ~~~~---~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al 306 (541)
...- |.........++|.+-.+|.+.-.++-..++..+.+++....+....+. |+++.+.+.+............
T Consensus 626 l~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~ 703 (1010)
T KOG1991|consen 626 LLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMM 703 (1010)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHH
Confidence 2221 1111223355677777778877788888888888777654432222222 6788888888888778888888
Q ss_pred HHHhHhhcCCchh-HH-HHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcH
Q 009184 307 RTVGNIVTGDDMQ-TQ-CVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANII 383 (541)
Q Consensus 307 ~~L~nl~~~~~~~-~~-~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l 383 (541)
-+|.|+++..... .. .....-++..+..+|.+.. ...=...||..+.-+.-....+++ ..+
T Consensus 704 ~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~d----------------q~i 767 (1010)
T KOG1991|consen 704 PALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLD----------------QYI 767 (1010)
T ss_pred HHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHh----------------hHh
Confidence 8999887644321 10 0011123445555565531 222234567766666542222333 134
Q ss_pred HHHHHHh----hc--CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc--------CCCChHHHHHHHHHHH
Q 009184 384 GPLVALL----EN--AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL--------VCPDPRIVTVCLEGLE 449 (541)
Q Consensus 384 ~~L~~~l----~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL--------~~~~~~~~~~~l~~L~ 449 (541)
|.++++. .. .+...+..++..+.|............|-+.|....+..+. +..|.++ ++-+|.
T Consensus 768 plf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKl---cvL~l~ 844 (1010)
T KOG1991|consen 768 PLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKL---CVLGLL 844 (1010)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHH---HHHHHH
Confidence 4444432 22 45678888888888888776667777777777755543332 2234443 333455
Q ss_pred HHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHH
Q 009184 450 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 498 (541)
Q Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~ 498 (541)
.|+..++... ...... .+...++..|..+=-..+..+|.
T Consensus 845 tli~l~~~~~---------~~~e~l-~~l~~~lv~L~~~Lp~ala~ra~ 883 (1010)
T KOG1991|consen 845 TLISLGQDPQ---------LPSEVL-GQLGPALVELLLSLPEALAERAQ 883 (1010)
T ss_pred HHHhccccCC---------chHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666542211 111111 14456666666555555555443
No 137
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.49 E-value=0.11 Score=55.05 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=152.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHH
Q 009184 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL 248 (541)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L 248 (541)
.+..|.+.-.++|+++..+...+..... .. .++...+..+..+..+.++..++.+++..|. +........+++..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~-~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQL-LQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhH-HH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence 4466777778999999777543322222 11 1455566666567778888889998888883 333344456778888
Q ss_pred HHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCChhhHHHHHHHHhHhhcCCchhHHHHHhc
Q 009184 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (541)
Q Consensus 249 ~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~ 326 (541)
.++......++..-...+|+..+..+++.. ...++.+.|.++.+. .+++|.+...+--++-.++.....+ --...
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~--g~m~e 612 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY--GPMQE 612 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--cchHH
Confidence 888877888999999999999998877653 356667888887775 4456766666666655554311111 11223
Q ss_pred CchHHHHHhhcCCCc----hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHH-hhcCchhHHHHH
Q 009184 327 QALPCLLNLLSGNYK----KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL-LENAEFDIKKEA 401 (541)
Q Consensus 327 ~~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a 401 (541)
..+|.+++.|..+ . .....-|+..|.-+.++.+.-.. ..+-.-++|.+.+. +.++|..+-..+
T Consensus 613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~-----------~~l~~~~FpaVak~tlHsdD~~tlQ~~ 680 (1005)
T KOG2274|consen 613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLP-----------NLLICYAFPAVAKITLHSDDHETLQNA 680 (1005)
T ss_pred HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCcc-----------HHHHHHHhHHhHhheeecCChHHHHhH
Confidence 5788999999876 4 55667777888878775444343 44444677888876 456778888889
Q ss_pred HHHHHHhccCCCH
Q 009184 402 AWAISNATSGGTH 414 (541)
Q Consensus 402 ~~aL~nl~~~~~~ 414 (541)
..||..++..+.+
T Consensus 681 ~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 681 TECLRALISVTLE 693 (1005)
T ss_pred HHHHHHHHhcCHH
Confidence 9999988876433
No 138
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.46 E-value=0.00087 Score=52.03 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 009184 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (541)
Q Consensus 133 i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 199 (541)
++...+.+|+|++..++...+.+.+.|++|.++.... ..+|-+++.|++++.|++..+++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999999999999999999999999998653 478999999999999999999988777664
No 139
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.43 E-value=0.00041 Score=44.40 Aligned_cols=39 Identities=38% Similarity=0.758 Sum_probs=35.6
Q ss_pred hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009184 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (541)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 187 (541)
++.+..+++.|+++.|++++.+++++++..++|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999997
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0078 Score=62.46 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=84.0
Q ss_pred hchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184 242 SPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (541)
Q Consensus 242 ~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 320 (541)
...++.|..+|..+ .-+.......++..+....++... .++..|+.++.+.. ...-+.++|+-+....+..
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a- 461 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA- 461 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC-
Confidence 34455666666542 345566666677666654443322 34566666664432 2333444444443322211
Q ss_pred HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE 400 (541)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 400 (541)
......+..+...+.-. +..+|.+|..+|.++..+++.... .+...|.+.+.+.|.++|..
T Consensus 462 --~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~~----------------sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 462 --PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLLP----------------SILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred --CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCccc----------------cHHHHHHHHhcCchHHHHHH
Confidence 01122344444444445 778999999999999865444333 46667888888899999999
Q ss_pred HHHHHHHhc
Q 009184 401 AAWAISNAT 409 (541)
Q Consensus 401 a~~aL~nl~ 409 (541)
|..+|.++.
T Consensus 523 Atf~l~~l~ 531 (865)
T KOG1078|consen 523 ATFYLKNLE 531 (865)
T ss_pred HHHHHHHhh
Confidence 999999886
No 141
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.043 Score=49.88 Aligned_cols=243 Identities=19% Similarity=0.263 Sum_probs=140.0
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHH
Q 009184 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (541)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 164 (541)
....-++.|+..|+++.... . +..+.+...++. .-.+.+.+++|+.... ..+++.|
T Consensus 17 ~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l 72 (289)
T KOG0567|consen 17 QPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVL 72 (289)
T ss_pred HHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHH
Confidence 34456778888888776432 1 333444444433 4566677777776654 2457777
Q ss_pred HHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC---------
Q 009184 165 VKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--------- 233 (541)
Q Consensus 165 ~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~--------- 233 (541)
+..|.. ..+-+|..|..+|+++. .+. ..+.+-+.. +++-..+...+..++..+-...
T Consensus 73 ~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~ 140 (289)
T KOG0567|consen 73 VEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS 140 (289)
T ss_pred HHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence 777655 45777778888888775 221 223333333 4444455555444554443221
Q ss_pred ------CCCChhhhhchHHHHHHhhc-cCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 009184 234 ------PQPPFDQVSPALPALAHLIH-SNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (541)
Q Consensus 234 ------~~~~~~~~~~~l~~L~~lL~-~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a 305 (541)
|.+. ....-+.-+...|. .+.+.. +..+...|.++. .++ .+..+..-+..++.-++..+
T Consensus 141 p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~SalfrhEv 207 (289)
T KOG0567|consen 141 PYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLADDSALFRHEV 207 (289)
T ss_pred ccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcccchHHHHHHH
Confidence 1111 11222333333333 233332 445555655542 222 23445556677788889999
Q ss_pred HHHHhHhhcCCchhHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHH
Q 009184 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIG 384 (541)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 384 (541)
..++|.+-+- -.++.|.+.|.. ..++.+|.+|+.+|+.++. ++. ++
T Consensus 208 AfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~~--------------------~~ 254 (289)
T KOG0567|consen 208 AFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--EDC--------------------VE 254 (289)
T ss_pred HHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HHH--------------------HH
Confidence 9999987642 235566666543 3378999999999999974 443 34
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhc
Q 009184 385 PLVALLENAEFDIKKEAAWAISNAT 409 (541)
Q Consensus 385 ~L~~~l~~~~~~v~~~a~~aL~nl~ 409 (541)
.|.+++.++++-|++.+..+|--+-
T Consensus 255 vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 255 VLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776543
No 142
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.019 Score=59.77 Aligned_cols=284 Identities=15% Similarity=0.136 Sum_probs=153.4
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 009184 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 197 (541)
.+.+=.++.+.. ..+..+|++++.++...++.... .++..|--+++++...+|-.|.++|..+|...|..-..
T Consensus 247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~- 319 (865)
T KOG1078|consen 247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV- 319 (865)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc-
Confidence 344444555555 67788888888877664433221 15666667777888888888888888888665531111
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHH
Q 009184 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (541)
Q Consensus 198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~ 277 (541)
+-.-|-.++ .+.+..+ +..++..|..............-++..+.=+..+..-+..++..+|+... +.
T Consensus 320 ----cN~elE~lI-td~NrsI---at~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~- 387 (865)
T KOG1078|consen 320 ----CNLDLESLI-TDSNRSI---ATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PR- 387 (865)
T ss_pred ----cchhHHhhh-cccccch---hHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cH-
Confidence 111122222 2223222 22333333322211111111222222222222222234455555554432 21
Q ss_pred HHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184 278 IQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (541)
Q Consensus 278 ~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (541)
...+.+..|-.+|.. +..+.+...+.++..++...+.... .++..|...+.+. +...-+...|.-+.
T Consensus 388 ----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlLG 455 (865)
T KOG1078|consen 388 ----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLLG 455 (865)
T ss_pred ----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHHh
Confidence 112445556666644 4456777777777777776655442 2344555555544 34445566666665
Q ss_pred cCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC
Q 009184 357 AGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 436 (541)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 436 (541)
...+.. ......+..+...+.-.+..+|..|..+|.++..+.. . ....+.-.|.+++.+.
T Consensus 456 ~EgP~a--------------~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-~-----l~~sI~vllkRc~~D~ 515 (865)
T KOG1078|consen 456 KEGPKA--------------PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-V-----LLPSILVLLKRCLNDS 515 (865)
T ss_pred ccCCCC--------------CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-C-----ccccHHHHHHHHhcCc
Confidence 432221 1112233444444444678899999999999984321 1 1234566778899999
Q ss_pred ChHHHHHHHHHHHHHH
Q 009184 437 DPRIVTVCLEGLENIL 452 (541)
Q Consensus 437 ~~~~~~~~l~~L~~l~ 452 (541)
|.+++..+--.|..+.
T Consensus 516 DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 516 DDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999988888776
No 143
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.021 Score=56.03 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=82.9
Q ss_pred CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc----CChH--HHHHHHhhc
Q 009184 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA----GNRE--QIQVIMHVH 370 (541)
Q Consensus 297 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~--~~~~~~~~~ 370 (541)
.+.-++..|+++++.++-+.........-......+...+.+. ....|..++|+++||+. +.+. ...
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~------ 475 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQ------ 475 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHH------
Confidence 3444777889999888876655444444445666677777766 67889999999999986 2221 111
Q ss_pred hhhHHHHHhcCcHHHHHHHhh---cCchhHHHHHHHHHHHhccCCCH--HHHHHHHHcCChHHHhhhc-CCCChHHHHHH
Q 009184 371 AFSIIAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLL-VCPDPRIVTVC 444 (541)
Q Consensus 371 ~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL-~~~~~~~~~~~ 444 (541)
.-+..-.+..++.... ....+|+..+..+|+|+...-.+ +........+.+..+.... -...-+++=.+
T Consensus 476 -----eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNa 550 (728)
T KOG4535|consen 476 -----ERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNA 550 (728)
T ss_pred -----HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHH
Confidence 1111123344444332 23578999999999998753210 0011111222233332222 22334566677
Q ss_pred HHHHHHHHH
Q 009184 445 LEGLENILK 453 (541)
Q Consensus 445 l~~L~~l~~ 453 (541)
+.++.||++
T Consensus 551 Cya~gNLfk 559 (728)
T KOG4535|consen 551 CYAMGNLFK 559 (728)
T ss_pred HHHHHHhhc
Confidence 777777775
No 144
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.032 Score=57.84 Aligned_cols=316 Identities=15% Similarity=0.181 Sum_probs=172.8
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhh----CCChhhHH
Q 009184 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIA----GDSPRCRD 195 (541)
Q Consensus 121 Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~----~~~~~~r~ 195 (541)
+.+-|.+++ .+.+.+|..-+..+.......-. ++-.+++ .|-+.+.+++. .+...+.++ .+..-..+
T Consensus 25 ik~~Lek~~-~~~KIeamK~ii~~mlnGe~~p~------Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~dgkl~~E 96 (948)
T KOG1058|consen 25 IKEKLEKGD-DEVKIEAMKKIIALMLNGEDLPS------LLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSDGKLLHE 96 (948)
T ss_pred HHHHHhcCC-hHHHHHHHHHHHHHHHcCCCchH------HHHHHhheeeccCchHHHH-HHHHHHHHccccCCCcccHHH
Confidence 334466666 67777776544443331111111 1112222 23445666665 455555555 22222333
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 275 (541)
+++- ...+-+-| +++++-++-..+..|+.|-. .+...+.+|.+...|.+.+.-|+.+|..|+..+-...+
T Consensus 97 MILv---cna~RkDL-QHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~ 166 (948)
T KOG1058|consen 97 MILV---CNAYRKDL-QHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE 166 (948)
T ss_pred HHHH---HHHHhhhc-cCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh
Confidence 3332 22333444 77888888888888876633 35778899999999999999999999999887765422
Q ss_pred HHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCC--chhHHHHHHHHH
Q 009184 276 DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY--KKSIKKEACWTV 352 (541)
Q Consensus 276 ~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L 352 (541)
. ++ .++-+.+-..| ...++.....|+..|... .++. ++.+|...+..-+ ++.++-.....+
T Consensus 167 ~----L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~I 230 (948)
T KOG1058|consen 167 H----LI-PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPER--------ALNYLLSNIDQIPSFNDSLQLVIVELI 230 (948)
T ss_pred h----hc-CChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH--------HHHHHHhhHhhccCccHHHHHHHHHHH
Confidence 1 11 14445555555 445777777777655432 2221 2223333332211 344555555555
Q ss_pred HHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhh
Q 009184 353 SNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDL 432 (541)
Q Consensus 353 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l 432 (541)
...+..++.... ..+..++.+|.+.++.++-+|+.+|.+++. ++..++. ....++++
T Consensus 231 rkv~~~~p~~~~----------------~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~-----Aa~~~i~l 287 (948)
T KOG1058|consen 231 RKVCLANPAEKA----------------RYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKA-----AASTYIDL 287 (948)
T ss_pred HHHHhcCHHHhh----------------HHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHHHH-----HHHHHHHH
Confidence 555554444333 356778888888888888888888888766 3444333 23344454
Q ss_pred cC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 009184 433 LV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 433 L~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~ 509 (541)
+. .+|..+....++-|..+-...+. .+ .|.+-.+..+.++++-++++++..|.-..-....
T Consensus 288 ~~kesdnnvklIvldrl~~l~~~~~~--------------il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 288 LVKESDNNVKLIVLDRLSELKALHEK--------------IL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred HHhccCcchhhhhHHHHHHHhhhhHH--------------HH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 43 34444444444444433311111 11 1222334445677777777777777666555444
No 145
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.29 E-value=0.063 Score=54.80 Aligned_cols=231 Identities=17% Similarity=0.141 Sum_probs=147.0
Q ss_pred cCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC----cHHHHHHHHHHHHHHhcCChhHHHHHHh-
Q 009184 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVID- 157 (541)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~i~~- 157 (541)
.+.++.+..+|+++|++++-.. ....+.+.+.|..+.++..|+... ++++..-..++|.-++...++.+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3567899999999999998753 333456678999999999999871 3889999999999999988888877775
Q ss_pred CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc--------C
Q 009184 158 HGAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------G 212 (541)
Q Consensus 158 ~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~--------~ 212 (541)
.+++..+...|.. .+......++.++.|+..+.+..... .....++.++.++. .
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~-~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPE-EFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccch-hhhHHHHHHHHHHHHHhccCCCC
Confidence 4777777776521 13455667888999998655532220 12223444444432 1
Q ss_pred CChhhHHHHHHHHHHhhhcCC-C-----------CCChhhhhchHHHHHHhhc----cC----ChhHHHHHHHHHHHhcc
Q 009184 213 QPKLSMLRNATWTLSNFCRGK-P-----------QPPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLSD 272 (541)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~-~-----------~~~~~~~~~~l~~L~~lL~----~~----d~~v~~~a~~~L~~l~~ 272 (541)
.+.......+..+|.|+--.. . ..........+..|+.+|. .. -.+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 223456777888888772111 0 0000111234445555543 21 13567778888888887
Q ss_pred CChHHHHHHHHh-----------------CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184 273 GTNDKIQAVIEA-----------------GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (541)
Q Consensus 273 ~~~~~~~~~~~~-----------------g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 316 (541)
.+....+ .+.. .+-.+|++++.++.+.++..+...+-.+|..+
T Consensus 280 ~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 280 AAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 6544333 3322 34556777887777777777777777776433
No 146
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.054 Score=59.19 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=150.8
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHH
Q 009184 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLV 197 (541)
Q Consensus 121 Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i 197 (541)
+.....+.++..+|..+..+|..++.. +.....+.+ ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 333344443489999999999999985 322222211 1233455555566666777778888888875444 333333
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh--cCC----CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC--RGK----PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (541)
Q Consensus 198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 271 (541)
.. .|+.++-.+ +..+...++++..+|..++ ... ..+....+...++.+...+-.+...+....+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 344444445 7778888999999998888 221 11224445666666666554444444444355555554
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (541)
Q Consensus 272 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (541)
.........-.-.++++.+..+|.+.+..++..|+..+..++..-++..-......+++.+..+++.. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 33222112122236777888888999999999999999999988775543333445888888888877 78888888888
Q ss_pred HHHHhc-CChHHHH
Q 009184 352 VSNITA-GNREQIQ 364 (541)
Q Consensus 352 L~nl~~-~~~~~~~ 364 (541)
|--+++ -..+.++
T Consensus 893 lekLirkfg~~eLe 906 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHhCHHHHH
Confidence 888877 3444455
No 147
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.25 E-value=0.013 Score=51.75 Aligned_cols=98 Identities=23% Similarity=0.249 Sum_probs=76.7
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh
Q 009184 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL 335 (541)
Q Consensus 256 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 335 (541)
++.++..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|..+...+-.. ....++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 577899999999999876654333 57889999999999999999999999998754311 122344778888
Q ss_pred hcCCCchhHHHHHHHHHHHHhcC-ChHHH
Q 009184 336 LSGNYKKSIKKEACWTVSNITAG-NREQI 363 (541)
Q Consensus 336 L~~~~~~~v~~~a~~~L~nl~~~-~~~~~ 363 (541)
+.++ +++|+..|..++..+... .+..+
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHhccchHH
Confidence 8888 999999999999999875 44433
No 148
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.018 Score=62.62 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=122.8
Q ss_pred HHHHhhhcCC-CCCChhhhhchHHHHHHhhc----cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CC
Q 009184 224 WTLSNFCRGK-PQPPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HP 297 (541)
Q Consensus 224 ~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~ 297 (541)
.++..+|... -.........+.|.+++..+ .++++++..|.-+|+.+..-+.+. ++ .-++.|+..|. ++
T Consensus 899 d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeksp 973 (1251)
T KOG0414|consen 899 DLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKSP 973 (1251)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcCC
Confidence 3444444443 11123344667888888884 458999999999999987665543 32 45788888885 88
Q ss_pred ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHH
Q 009184 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAV 377 (541)
Q Consensus 298 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l 377 (541)
++.+|..++-++|.++-.-+...+ .+-+.|...|.+. ++.+|+.|..+|+++...+.-.++
T Consensus 974 ~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiKVK------------- 1034 (1251)
T KOG0414|consen 974 SPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIKVK------------- 1034 (1251)
T ss_pred Cceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhHhc-------------
Confidence 999999999999999876664442 3456788899988 999999999999999986554444
Q ss_pred HhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC
Q 009184 378 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 378 ~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 413 (541)
|.++.+...+.+++.+++.-|-..+..+...++
T Consensus 1035 ---Gql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1035 ---GQLSEMALCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred ---ccHHHHHHHhcCCcHHHHHHHHHHHHHhhhccc
Confidence 899999999999999999988877777766553
No 149
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.23 E-value=0.0008 Score=43.02 Aligned_cols=37 Identities=38% Similarity=0.726 Sum_probs=33.8
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (541)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (541)
....+.+.|+++.|+.++.++ ++.++..++|+|.|++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 556788999999999999987 9999999999999996
No 150
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.20 E-value=0.014 Score=56.48 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=140.3
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 228 (541)
.+...+.+..|+..|..-+.+.+..+...++++.+..... .+.+... .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 3445578889999998888999999999999998654332 3344332 123333333344567777777777777
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCChhhHHHH
Q 009184 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA 305 (541)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~a 305 (541)
.++...........+.+-.+......++-++..+|..++..+..........++.. .++.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77764333333345566667777888899999999999998776655554445444 466778889999999999999
Q ss_pred HHHHhHhhcCCchh---HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 306 l~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
+..||.+....... ...+-+..-+..++.+|.+. +..++.+|..++--+++
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 99999998754432 23344566788999999998 89999999999888877
No 151
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.20 E-value=0.071 Score=54.81 Aligned_cols=292 Identities=12% Similarity=0.091 Sum_probs=150.1
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 009184 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (541)
Q Consensus 119 ~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~ 198 (541)
..++...+ ++ +..+..|+..+.......|+..+.. +..++.++.+++..||.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 34444444 34 7899999999999999888887654 678999999999999999999999999988765444
Q ss_pred hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHH-hccCC
Q 009184 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSY-LSDGT 274 (541)
Q Consensus 199 ~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~-l~~~~ 274 (541)
+...|..+| .+.++.-...+-++|..+...++ .+.+..+...+. +.++.+++.++..|.. +..-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 356677777 66666666677777777766532 344555555544 5678889988877643 22221
Q ss_pred hHHHH--HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----CchhHHHHHhcCchHHHHHhh------cCCCch
Q 009184 275 NDKIQ--AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQCVIEYQALPCLLNLL------SGNYKK 342 (541)
Q Consensus 275 ~~~~~--~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~ 342 (541)
.+... .-.+.-++..+.+.|.+-...-....+.+|..+-.. .....+.+ ++.+.... ... ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence 11111 122223455566677653333333444555555441 22222222 23333222 112 33
Q ss_pred hHHHHHHHHHHH----Hhc--CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHH
Q 009184 343 SIKKEACWTVSN----ITA--GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 416 (541)
Q Consensus 343 ~v~~~a~~~L~n----l~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~ 416 (541)
+.......++.. +.. .+...+. ++. ..++|.+-.+ ..+.+...+.++..++.......
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~-----------y~~-~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d 303 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVN-----------YMC-EKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD 303 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHH-----------HHH-HHTCCCTT---------HHHHHHHHHHHHHTT----T
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHH-----------HHH-HHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc
Confidence 333222222222 111 1222232 333 3566655554 44677788888888887654322
Q ss_pred HHHHHHcCChHHHhhhcC----C--CCh----HHHHHHHHHHHHHHHhhHh
Q 009184 417 IKFLVIQGCIKPLCDLLV----C--PDP----RIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 417 ~~~l~~~~~i~~L~~lL~----~--~~~----~~~~~~l~~L~~l~~~~~~ 457 (541)
... .++.+.++|. . ..+ ..++..|.+++.|....+.
T Consensus 304 ~~~-----~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 304 ARQ-----LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHH-----HHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHH-----HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 222 2334433332 1 122 3577778888888776554
No 152
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.015 Score=60.71 Aligned_cols=222 Identities=15% Similarity=0.142 Sum_probs=148.9
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCC-hhHHHHHHHHHHHhc
Q 009184 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYLS 271 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~l~ 271 (541)
-|...+..|+...|+++. ....+........+|.. .-..........++.+...+++.. .--...++.++.||+
T Consensus 496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 344556778889999887 44455666666666661 111111222444555555554332 223567888999998
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHH
Q 009184 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACW 350 (541)
Q Consensus 272 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~ 350 (541)
..++...+.+++...++.+-.++..+++..+..++..+.||..++.-....+.+ ...++.....+... +.....+++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 777766677888888888888888999999999999999999988766666666 34566666666665 7777777777
Q ss_pred HHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 009184 351 TVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 429 (541)
Q Consensus 351 ~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 429 (541)
++..|+......+. ... .......+..++.+++.+++...+..+.|+.. +..+....+.....+..+
T Consensus 650 a~a~I~sv~~n~c~-----------~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l 717 (748)
T KOG4151|consen 650 ALAAITSVVENHCS-----------RILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELL 717 (748)
T ss_pred cccchhhcchhhhh-----------hHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHH
Confidence 77767664444443 211 23567788888899999999999999999544 445555555555555544
Q ss_pred hhh
Q 009184 430 CDL 432 (541)
Q Consensus 430 ~~l 432 (541)
...
T Consensus 718 ~~~ 720 (748)
T KOG4151|consen 718 SGL 720 (748)
T ss_pred HHH
Confidence 443
No 153
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.19 E-value=0.017 Score=48.75 Aligned_cols=131 Identities=13% Similarity=0.090 Sum_probs=103.8
Q ss_pred HHHHHHhCcHHHHHHhhCCCC------hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHH
Q 009184 278 IQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACW 350 (541)
Q Consensus 278 ~~~~~~~g~l~~L~~lL~~~~------~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~ 350 (541)
...++..+++..|++++.++. ..+...++.++..+..... .....+...++..+...+.... +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 345788899999999997654 3677788888888887543 2345666778888888888664 6789999999
Q ss_pred HHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHH
Q 009184 351 TVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420 (541)
Q Consensus 351 ~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 420 (541)
.|-+++..++...+ .+.+.=-++.|+..|...+++++..|+..+..+...++....+.+
T Consensus 83 ILEs~Vl~S~~ly~-----------~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 83 ILESIVLNSPKLYQ-----------LVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHHhCCHHHHH-----------HHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999998777665 555666789999999999999999999999999887776655543
No 154
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.18 E-value=0.0028 Score=49.23 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=67.3
Q ss_pred HHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcC
Q 009184 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEAN 381 (541)
Q Consensus 302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~ 381 (541)
|..++.+|..++.+-.......+ ..+++.++..+.+. +.+||..||.+|.|++......+- . .-..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l-----------~-~f~~ 68 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEIL-----------P-YFNE 68 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHH-----------H-HHHH
Confidence 56677777777766655544444 36889999999999 999999999999999874333322 2 1235
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNA 408 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl 408 (541)
+++.|.+++.+.++.||..| ..|-++
T Consensus 69 IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 69 IFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 88899999999999988766 444444
No 155
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.18 E-value=0.029 Score=54.17 Aligned_cols=192 Identities=20% Similarity=0.213 Sum_probs=123.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHH--hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC--Ch
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS 149 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~--~~ 149 (541)
.+...+..+.......|..++..+.+++... ...+.+- ...++..+...++.+. .+-+..|+.+++-++-. ..
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence 4678888888778999999999999998753 2223322 2346888888898887 56667777776666542 22
Q ss_pred hHHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhh---CCChhhHHHHHhcCChHHHHHh--hc---------CC
Q 009184 150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIA---GDSPRCRDLVLSQGGLVPLLAQ--LN---------GQ 213 (541)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~---~~~~~~r~~i~~~g~i~~Ll~~--l~---------~~ 213 (541)
.....+++ .+.|.|.+.+... ...+|..|+.+|+-++ +..+......++ .+..+... +. ..
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 33444443 3578888888763 4567777777777664 333222111111 22222111 11 12
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184 214 PKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (541)
Q Consensus 214 ~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 271 (541)
+++.+...|+.+++-|...-+... .......+|.|..+|.++|.+|+..|..+|.-+.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 245688888877777775544322 2345778999999999999999999998887764
No 156
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.082 Score=54.91 Aligned_cols=280 Identities=17% Similarity=0.127 Sum_probs=155.4
Q ss_pred cCCHHHHHHhhcCC-------CcHHHHHHHHHHHHHHhc--CChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009184 115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185 (541)
Q Consensus 115 ~g~i~~Lv~lL~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 185 (541)
.|+++.++..|... +++.-.+.|++.+.++.+ ..+.....+.+.-+++.++..++++.--++..|+..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 57888899888432 124455677778877766 333444445555567777778888888899999999999
Q ss_pred hhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC--hhhhhchHHHHHHhhccCChhHHHHH
Q 009184 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEVLTDA 263 (541)
Q Consensus 186 l~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~lL~~~d~~v~~~a 263 (541)
+..+ +.+..+-..+.+...+.+ ++.+..++..|+.++..+..+..... ...+.+.++.|+.+-..-+.++...+
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 8543 333333344567777778 55778888889999988887752111 11223444444444444456666665
Q ss_pred HHHHH-HhccC----ChHHHHHHHHhCcHHHHHHhhCCCC------hhhHHHHHHHHhHhhc---C--CchhHHHHHhcC
Q 009184 264 CWALS-YLSDG----TNDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT---G--DDMQTQCVIEYQ 327 (541)
Q Consensus 264 ~~~L~-~l~~~----~~~~~~~~~~~g~l~~L~~lL~~~~------~~v~~~al~~L~nl~~---~--~~~~~~~~~~~~ 327 (541)
+..+. +.+.. ..+....+++ .++.....++.+++ .+-+..|.++|..+.+ . +....-.-+...
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s 641 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS 641 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 55542 22221 1111111111 22223333343321 1223334444433322 1 111111122334
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc-hhHHHHHHHHHH
Q 009184 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE-FDIKKEAAWAIS 406 (541)
Q Consensus 328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~aL~ 406 (541)
..|.+--.|.+. -...-.+|+..+-+.+-...+ + .-+.-|+.+.+.+++.+.. .....++.-++.
T Consensus 642 lypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I------------~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~ 707 (970)
T COG5656 642 LYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-I------------EPIMWGIFELLLNLLIDEITAVYSEEVADALD 707 (970)
T ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-h------------hhhhhHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 455555555655 556667777777666543222 1 1122256666666666655 467888999999
Q ss_pred HhccCCC
Q 009184 407 NATSGGT 413 (541)
Q Consensus 407 nl~~~~~ 413 (541)
|++..|.
T Consensus 708 nfityG~ 714 (970)
T COG5656 708 NFITYGK 714 (970)
T ss_pred HHHHhCc
Confidence 9998774
No 157
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.11 E-value=0.0061 Score=64.30 Aligned_cols=186 Identities=17% Similarity=0.137 Sum_probs=127.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-------------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (541)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~ 227 (541)
...|+.+|+. +++-..+..++.-+..|++.+ |+.+.. .++|.+++.+ .......+.+.+.+|+
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~-~ivP~l~~~~-~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC-DIVPILVSKF-ETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH-hhHHHHHHHh-ccCCccchhHHHHHHH
Confidence 3455666654 344455667777666665532 222222 3577888877 4556667778888888
Q ss_pred hhhcCCCCCC-hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---hhhHH
Q 009184 228 NFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLI 303 (541)
Q Consensus 228 ~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~~ 303 (541)
+...+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ -++|.++.+=.+++ ..+|.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHH
Confidence 8887655432 2234678888888899999999999999998877554433222222 46677777665554 57899
Q ss_pred HHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (541)
Q Consensus 304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (541)
.|+.+|+.+....+...-......++..|.+.|.++ ...||++|..+=
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTR 1019 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHh
Confidence 999999999985554433445567888999999998 888999998653
No 158
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.89 E-value=0.048 Score=48.11 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-ChHHHHHh
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQ 209 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g-~i~~Ll~~ 209 (541)
|.++..++.+++.++.-.+...+ ..++.+...|.++++.+|.+|+.+|..+...+. +.-.| .+..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999886554443 347889999999999999999999999985432 11122 23667777
Q ss_pred hcCCChhhHHHHHHHHHHhhhcCC
Q 009184 210 LNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
+ .++++.++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 7 8889999999999999998773
No 159
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.88 E-value=0.22 Score=48.44 Aligned_cols=204 Identities=13% Similarity=0.093 Sum_probs=143.5
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh-----HHHHHh--cCchHHHHHhhcCCCchhHHHHHHHH
Q 009184 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ-----TQCVIE--YQALPCLLNLLSGNYKKSIKKEACWT 351 (541)
Q Consensus 279 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (541)
+.+...+++..|+..|..-+.+.+..+..+.+++....... .+.+.. ..++..|+.... ++++-..+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 34667799999999999989899999999999998754322 223332 234555555544 44565666666
Q ss_pred HHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc--CChHHH
Q 009184 352 VSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--GCIKPL 429 (541)
Q Consensus 352 L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~i~~L 429 (541)
|..++.. +...+ .++....+..+++.+..++.++...|...+..+......-...++..+ ..+..+
T Consensus 147 lRec~k~-e~l~~-----------~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~ 214 (335)
T PF08569_consen 147 LRECIKH-ESLAK-----------IILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY 214 (335)
T ss_dssp HHHHTTS-HHHHH-----------HHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHhh-HHHHH-----------HHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 6666654 55566 777788888899999999999999999999998875433334444332 456788
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184 430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 505 (541)
Q Consensus 430 ~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~ 505 (541)
..+|.+++.=++.++++.|..|+..-.... .....+.+..-+..+-.|..++...|+--|..+..-|-
T Consensus 215 ~~Ll~s~NYvtkrqslkLL~ellldr~n~~--------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 215 NKLLESSNYVTKRQSLKLLGELLLDRSNFN--------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHCT-SSHHHHHHHHHHHHHHHHSGGGHH--------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHccCCCeEeehhhHHHHHHHHHchhHHH--------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 889999999899999999999986543322 24566777777888888889999999988887776443
No 160
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.85 E-value=0.19 Score=45.92 Aligned_cols=224 Identities=20% Similarity=0.271 Sum_probs=139.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
+..+.+....+.......++.++..+- ....+|.|+..|...+ .|.++.+|+.+|+++.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~------------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ------------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc------------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence 445555555544445556666665542 2446888988887543 37889999999999873 2
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---------------hhhHHHHHhcCChHHHHHhhcCCChhhH
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS---------------PRCRDLVLSQGGLVPLLAQLNGQPKLSM 218 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~---------------~~~r~~i~~~g~i~~Ll~~l~~~~~~~~ 218 (541)
..++.+-++.+.+-..+++.|..++..+--.+ |... ...+-+..+-..|.+.+.+..
T Consensus 100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~ 171 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLF 171 (289)
T ss_pred -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHH
Confidence 34677777777788888888888877663110 1000 011123344444433333333
Q ss_pred -HHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC--
Q 009184 219 -LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-- 295 (541)
Q Consensus 219 -~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-- 295 (541)
+..+.+.|.|+-. ...+..|..-+..++.-.+..+..+++.|-.. -.++.|.+.|.
T Consensus 172 ~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~ 230 (289)
T KOG0567|consen 172 ERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDE 230 (289)
T ss_pred HHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhh
Confidence 2334444444322 33456666667667777889999999887432 24566666663
Q ss_pred CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 296 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
..++-+|..|+.+||.++. ...++.|...+.+. .+-|++.+..+|.-+-.
T Consensus 231 ~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~-~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDE-ERVVRESCEVALDMLEY 280 (289)
T ss_pred hcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence 3568899999999998874 22355677778777 77777777777765544
No 161
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.83 E-value=0.0079 Score=46.76 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=55.9
Q ss_pred hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCChHHHH
Q 009184 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
++...+++|+|++..+....+.+.+.|+++.+++...-+ .+|-+|..|.|++.|++.++++..+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 466789999999999998888999999999999876533 2789999999999999999888776
No 162
>PRK14707 hypothetical protein; Provisional
Probab=96.79 E-value=1.7 Score=51.09 Aligned_cols=382 Identities=18% Similarity=0.124 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhc-CCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (541)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 166 (541)
.....+++.-+.+... ..+.+++-.. -+..|++-++ .+++.+.+..+......++.+ +..+..+ +...|..++.
T Consensus 138 ~c~~a~a~i~~~~~~~--~~~~~~l~~~-~~~lllNafSKw~~~~~c~~aa~~la~~~~~~-d~~~~~~-~~q~ia~~lN 212 (2710)
T PRK14707 138 RCERAVARLARHLRRE--DKARQTLNAQ-NISLALNAFSKWSDNPDCQAVAPRFAALVASD-DRLRSAM-DAQGVATVLN 212 (2710)
T ss_pred HHHHHHHHHHHHhccc--cchhhhhccc-cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-hhhhccc-chHHHHHHHH
Confidence 3444444444444432 2333333222 2334444333 344577777777777777664 3444433 4445666777
Q ss_pred hhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh-hhcCCCCCChhhh-h
Q 009184 167 LLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPPFDQV-S 242 (541)
Q Consensus 167 lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~-~ 242 (541)
.++. +++..+. +...|.....+....+..+-.. .+...++.|.+-++.....++...+.. +..+. ....... .
T Consensus 213 a~sKWp~~~~c~~-aa~~la~~l~~~~~l~~~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q 289 (2710)
T PRK14707 213 ALCKWPDTPDCGN-AVSALAERLADESRLRNELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPI 289 (2710)
T ss_pred HHhcCCCChhHHH-HHHHHHHHHcCcHHHHHhCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHH
Confidence 7766 4455544 4444444333334455554444 466777777777777666666665553 44332 2222222 2
Q ss_pred chHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (541)
Q Consensus 243 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~ 321 (541)
.+-..|..+-+-++..+...+...|..=...+.+..+. .+.-.+...+.-| +=++..+...|...|..-....++..+
T Consensus 290 ~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~ 368 (2710)
T PRK14707 290 NVTQALNALSKWADLPVCAEAAIALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK 368 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc
Confidence 33333444445577777777776665433334433332 2223344444444 335545555555554444444444443
Q ss_pred HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA 401 (541)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 401 (541)
-++..++..+++.|+.=++..+...|+..|..=..++.+..+ .+--.|+-..|-.+-+.++..+...+
T Consensus 369 -~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~-----------~~~~Q~van~lnalsKWPd~~~C~~a 436 (2710)
T PRK14707 369 -DLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRK-----------GLDPQGVSNALNALAKWPDLPICGQA 436 (2710)
T ss_pred -ccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhh-----------hcchhhHHHHHHHhhcCCcchhHHHH
Confidence 334556666666665533555556666665555556666665 44444554444445556888888888
Q ss_pred HHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHH
Q 009184 402 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 481 (541)
Q Consensus 402 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 481 (541)
+.+|.--+.. +.+.++.|--.++...|-.+-+++|..+...+.+.|..=+..... .+.-|.-.+....
T Consensus 437 a~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~-----------l~~a~~~q~~~~~ 504 (2710)
T PRK14707 437 VSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR-----------LRKALKPQEVVIA 504 (2710)
T ss_pred HHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH-----------HHhhcCHHHHHHH
Confidence 8888766653 566666666667777777777899988776666655443332222 3555555666778
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 009184 482 IESLQTHDNAEIYEKSVKLLE 502 (541)
Q Consensus 482 l~~L~~~~~~~i~~~a~~il~ 502 (541)
|..|...++...+..|..-|.
T Consensus 505 L~aLSK~Pd~~~c~~A~~~lA 525 (2710)
T PRK14707 505 LHSLSKWPDTPICAEAASALA 525 (2710)
T ss_pred HHHhhcCCCcHHHHHHHHHHH
Confidence 888888888777666554443
No 163
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.78 E-value=0.082 Score=48.46 Aligned_cols=184 Identities=13% Similarity=0.163 Sum_probs=117.1
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHH-------hhCCCC--h---hhHHHHHHHHhHhhcCCchhHHH
Q 009184 256 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAE-------FLMHPS--P---SVLIPALRTVGNIVTGDDMQTQC 322 (541)
Q Consensus 256 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~-------lL~~~~--~---~v~~~al~~L~nl~~~~~~~~~~ 322 (541)
+++.++.|+.-|+.--+..++..-.+..+ |.+..|++ .+..+. . .-...|+..+.-+++ .++....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 56667777777766555444444444444 65555543 233332 1 233455555666666 5556668
Q ss_pred HHhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184 323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI 397 (541)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 397 (541)
++++.+.-.|.+.|.... -+.+|-....+++.+.. ++++.+. .+.+.+++|..++.++.++.-.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~-----------fLl~tEiiplcLr~me~GselS 155 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVIS-----------FLLQTEIIPLCLRIMEFGSELS 155 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHH-----------HHHCTTHHHHHHHHHHHS-HHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHH-----------HHHhhchHHHHHHHHHhccHHH
Confidence 899999888888887652 24688888999999988 5777888 8889999999999999999889
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHc--------CChHHHh-hhcCCCChHHHHHHHHHHHHHHH
Q 009184 398 KKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~~L~-~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
|..|...+..+.. +.....++++. .++..++ .+.+.+++.+...++.+...|.+
T Consensus 156 KtvAtfIlqKIL~--dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 156 KTVATFILQKILL--DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 9999999999987 34555554321 1222222 23345667777777777666654
No 164
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.25 Score=51.42 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=106.5
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM 367 (541)
Q Consensus 288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 367 (541)
+.+-+++.+.++-+|.....+++---.+.. +.+++..|++.--++.+.+||+.|..+|+-++..+++++-
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~--- 591 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLP--- 591 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhhch---
Confidence 445566677777777776655543222221 1345666777644444889999999999999998887654
Q ss_pred hhchhhHHHHHhcCcHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHH
Q 009184 368 HVHAFSIIAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 446 (541)
Q Consensus 368 ~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~ 446 (541)
..+.+|. +.++.||.-++.+|+-.+.+..... ++..|-.+.+++..-|+..++-
T Consensus 592 -----------------s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlI 646 (929)
T KOG2062|consen 592 -----------------STVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALI 646 (929)
T ss_pred -----------------HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHH
Confidence 3445554 4589999999999998887542211 3444444555555567888888
Q ss_pred HHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009184 447 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 503 (541)
Q Consensus 447 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~ 503 (541)
++..|+.-.... .++-. .|+.+.++.+....+++.-.+--.||..
T Consensus 647 a~amIm~Q~t~~-------~~pkv-----~~frk~l~kvI~dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 647 ALAMIMIQQTEQ-------LCPKV-----NGFRKQLEKVINDKHEDGMAKFGAILAQ 691 (929)
T ss_pred HHHHHHHhcccc-------cCchH-----HHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 887776432221 11112 2334667777777777776666666654
No 165
>PRK14707 hypothetical protein; Provisional
Probab=96.70 E-value=2 Score=50.54 Aligned_cols=402 Identities=16% Similarity=0.096 Sum_probs=215.6
Q ss_pred CHHHHHHhhcC--CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 74 ~l~~l~~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
.+..+++.+.. ++...+..+.. |...+..+ ....+.+-..|+...|-.+-+.+++++.+..+...-..++. .+..
T Consensus 164 ~~~lllNafSKw~~~~~c~~aa~~-la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQAVAPR-FAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred cHHHHHHHhhcCCCCchHHHHHHH-HHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 34555665553 44444444444 44444332 23333443344444444455566657777655555555555 3444
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 230 (541)
+..+ +...+...+..|+. ++.....++..+|..=..+.+..++.+-.. .+.-.++-|.+-++..+...+...|..=.
T Consensus 241 ~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 241 RNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 4333 33345556666655 555555555555544333555565554433 35556666667777777776666655433
Q ss_pred cCCCCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHH
Q 009184 231 RGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRT 308 (541)
Q Consensus 231 ~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~ 308 (541)
.+++....... .++-..|..+-+-+|..+...+..+|..=...+++..+.+- ...+..++.-| +=++......|...
T Consensus 319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 33332222222 33333344444456777777777777544334444434332 33445555555 33555555555555
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA 388 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 388 (541)
|..-..+..+.. .-++...+..+++.|..=++..+...++..|.--..++.+..+ .+--.++...|--
T Consensus 398 LA~~l~~d~~l~-~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~-----------~~~p~~va~~Lna 465 (2710)
T PRK14707 398 LAEHVVDDLELR-KGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCK-----------ALDPINVTQALDA 465 (2710)
T ss_pred HHHHhccChhhh-hhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHh-----------hcChHHHHHHHHH
Confidence 554444455554 3445566666666666543666666777766666666677665 4444454444444
Q ss_pred HhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH-HHHHHHHHHhhHhhhhcCCCCcc
Q 009184 389 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC-LEGLENILKVGEAEKNLGNTDVN 467 (541)
Q Consensus 389 ~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~-l~~L~~l~~~~~~~~~~~~~~~~ 467 (541)
+-+.+|..+...++..|..=+.. +++..+.|--+++...|-.+-+.+|......+ .++-..+..-. .
T Consensus 466 lSKWPd~p~c~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-~---------- 533 (2710)
T PRK14707 466 LSKWPDTPICGQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-Q---------- 533 (2710)
T ss_pred hhcCCCChhHHHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-h----------
Confidence 44567877877777777655443 45566666556677777777777775533322 23333333111 1
Q ss_pred hhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 468 VFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 468 ~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
....|..-+....+..|..+++.+....+..-|...+.
T Consensus 534 -l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~ 571 (2710)
T PRK14707 534 -LRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLA 571 (2710)
T ss_pred -hhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence 23333334445556667777777777777666665543
No 166
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.70 E-value=0.3 Score=44.06 Aligned_cols=153 Identities=16% Similarity=0.225 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-----CChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHH
Q 009184 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCL 332 (541)
Q Consensus 259 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L 332 (541)
-..+++..+..++.+++. ...++++.+--.+..+|.. +.+.+|..+++.||.++..++ +....++..+++|..
T Consensus 95 RVcnaL~LlQcvASHpdT-r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDT-RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcCcch-HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345555555556665554 4568888887788888854 346689999999999998766 455567789999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh-hchhhHHHHHhcCcHHHH-HHHhhcCchhHHHHHHHHHHHhcc
Q 009184 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH-VHAFSIIAVIEANIIGPL-VALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~L-~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
++.+..+ +...+..|.+++.-|...+. ...|+=. .+-|.. +. .++..+ .++.+.+++.+-+.++.+..+++.
T Consensus 174 Lrime~G-SelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~a---v~-~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 174 LRIMESG-SELSKTVATFILQKILLDDV-GLYYICQTAERFSA---VA-LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 9999999 88889999999998887433 2221100 112211 11 123333 334455789999999999999987
Q ss_pred CCCHHHHHHH
Q 009184 411 GGTHEQIKFL 420 (541)
Q Consensus 411 ~~~~~~~~~l 420 (541)
++..+..|
T Consensus 248 --nprar~aL 255 (293)
T KOG3036|consen 248 --NPRARAAL 255 (293)
T ss_pred --CHHHHHHH
Confidence 44444433
No 167
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.70 E-value=0.84 Score=47.19 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=109.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+.+..++...+ ++...+..|++.|.+..... |... ..++..++++..+.+ ..+|.+|+..|-.+|.++++..
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~F--P~l~----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHF--PDLQ----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC---GGGH----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC--hhhH----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHH
Confidence 35567777766 47889999999999998764 3322 225888999999988 9999999999999999888887
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc--CCChhhHHHHHHHHHHhhh
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--GQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~--~~~~~~~~~~a~~~L~~l~ 230 (541)
..+. ..|+++|.++++.-...+-++|..+...++. +.+..++..+. ...++.+++.++..|..-.
T Consensus 95 ~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 95 SKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred hHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 7664 7899999998888888888888887644442 23455555553 2457778888887775433
Q ss_pred cCC-C-C--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 231 RGK-P-Q--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 231 ~~~-~-~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
..- + . +..+...-++..+.+.|.+-..+--.-....|..+-.
T Consensus 162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp GGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred hhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 322 1 1 1133444555666666654222222333445555543
No 168
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.69 E-value=1.6 Score=49.47 Aligned_cols=146 Identities=10% Similarity=0.092 Sum_probs=98.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
-+..++..|..+...+|-.|+++|..+...++.--.+.-++.++...+ .++. ..+++.|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~----~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL----NDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh----ccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 356667777777889999999999999875321112333344444333 3344 79999999999988776666655
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
... ..+..-+.++...||..++..+..+|...|.+-... + +...++... .++...++..++.++.++-...
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-~--~cakmlrRv-~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-D--MCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-H--HHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence 444 334555556788999999999999998877643221 1 233333333 3444558999999999988776
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.59 E-value=0.02 Score=60.63 Aligned_cols=191 Identities=18% Similarity=0.144 Sum_probs=129.1
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC-------------ChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 009184 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-------------PFDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (541)
Q Consensus 202 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 268 (541)
+...++..|. ++++-..+..+++-+..+.+.. .......++|.++..+.+.+...+..-+.+|+
T Consensus 816 ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence 3455666662 2444455555555554443110 11223678899999988777778888888998
Q ss_pred HhccCChHHHHHHHH--hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCc--hhH
Q 009184 269 YLSDGTNDKIQAVIE--AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSI 344 (541)
Q Consensus 269 ~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~~v 344 (541)
++..+-+. +.+.. ..++|.|++.|+-++..++..++.++.-+..........-+ ..++|.++.+=.+..+ ..+
T Consensus 893 hVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~V 969 (1030)
T KOG1967|consen 893 HVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVV 969 (1030)
T ss_pred HHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHH
Confidence 88776554 22322 26788888999999999999999999888765554332222 3467777776665522 579
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhc
Q 009184 345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 409 (541)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 409 (541)
|..|..+|..++..-|...- .-....++..|+..|.++..-||++|..+=.+..
T Consensus 970 R~~ALqcL~aL~~~~P~~~l-----------~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 970 REDALQCLNALTRRLPTKSL-----------LSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHHHhccCCCccc-----------ccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 99999999999983333222 3344578888999998888899999988755543
No 170
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=0.19 Score=52.10 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=80.9
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch
Q 009184 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (541)
Q Consensus 239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 318 (541)
..+.+.+-.++....+++..|+..+|..|..+...... +...+-.++...+..-+.+..+.+|..|+.+|+.+=..+..
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 35677777777878889999999999999999874332 22233347777888888899999999999999998632211
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (541)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (541)
. +..+...+..+++++++++||..|...+.
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 1 23466778889988879999998765444
No 171
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.52 E-value=2.1 Score=48.61 Aligned_cols=237 Identities=16% Similarity=0.131 Sum_probs=130.0
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh---CCC--------ChhhHHHHHHH
Q 009184 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL---MHP--------SPSVLIPALRT 308 (541)
Q Consensus 240 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL---~~~--------~~~v~~~al~~ 308 (541)
....+=..|.+++-.........|..|++.++..-......+. .++....+.| ++. ........+.+
T Consensus 1118 fL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~--~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsift 1195 (1692)
T KOG1020|consen 1118 FLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVK--ACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFT 1195 (1692)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHH
Confidence 3344444555555555556666777777777653111111111 1222232222 222 22345667888
Q ss_pred HhHhhcCCc---------h--hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHH
Q 009184 309 VGNIVTGDD---------M--QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAV 377 (541)
Q Consensus 309 L~nl~~~~~---------~--~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l 377 (541)
+|-++.+.+ . +....+..+++..|.-..+.. +..+|..|+..++.+|...+. ++
T Consensus 1196 lG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~--------------l~ 1260 (1692)
T KOG1020|consen 1196 LGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS--------------LF 1260 (1692)
T ss_pred HHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch--------------hh
Confidence 888886321 0 011234456777777777777 889999999999999985554 33
Q ss_pred HhcCcHHHHHHHhhcCchhH--HHHHHHHHHHhccC---------------CCHHHHHHHH-------HcCC--------
Q 009184 378 IEANIIGPLVALLENAEFDI--KKEAAWAISNATSG---------------GTHEQIKFLV-------IQGC-------- 425 (541)
Q Consensus 378 ~~~~~l~~L~~~l~~~~~~v--~~~a~~aL~nl~~~---------------~~~~~~~~l~-------~~~~-------- 425 (541)
....+...+...+.+..... +..++..+.-+... ...+..+.+. ..|+
T Consensus 1261 ~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlf 1340 (1692)
T KOG1020|consen 1261 TSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLF 1340 (1692)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHH
Confidence 34444455555555432222 22222222222210 0122222222 1112
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184 426 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 505 (541)
Q Consensus 426 i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~ 505 (541)
++.+.+..-+.|..++..+++.+..+++-|- .+|.. .+..|..|..++.+.++++|..++...+
T Consensus 1341 l~~ILe~cl~~d~~~r~~aikvl~liL~QGL---------VhP~~-------cvPtLIAL~Tdp~~~~r~~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1341 LDNILESCLDRDLQVRLVAIKVLKLILNQGL---------VHPVH-------CVPTLIALETDPSQAIRHVADELLKEID 1404 (1692)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHccC---------CCccc-------hhhhheeecCChHHHHHHHHHHHHHHHH
Confidence 2222222234677888899999988887552 22222 3677888889999999999999998877
Q ss_pred CCCC
Q 009184 506 LDDE 509 (541)
Q Consensus 506 ~~~~ 509 (541)
.-++
T Consensus 1405 ~kY~ 1408 (1692)
T KOG1020|consen 1405 EKYE 1408 (1692)
T ss_pred HhhH
Confidence 6544
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.51 E-value=0.0066 Score=48.50 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=60.9
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS 406 (541)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~ 406 (541)
.++..|+.+|..+.++.+..-||.-|+.++..-|.... .+-+.|+-..+++++.+++++|+.+|+.|+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~-----------ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN-----------IIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH-----------HHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH-----------HHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 46788999996655888889999999999997787776 6668899999999999999999999999998
Q ss_pred Hhcc
Q 009184 407 NATS 410 (541)
Q Consensus 407 nl~~ 410 (541)
.+..
T Consensus 112 klm~ 115 (119)
T PF11698_consen 112 KLMV 115 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 173
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.09 Score=52.90 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=99.4
Q ss_pred HHHHhhccCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCCchhHHHH
Q 009184 247 ALAHLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (541)
Q Consensus 247 ~L~~lL~~~d~~v~~~a~~~L~~--l~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 323 (541)
.+.+++.+.|+-.+.....++.. ...++ .|++..++.. .++.+.+++..|+-+||-++....
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 55666766777677666555432 22222 2567777777 677889999999999998886443
Q ss_pred HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHH
Q 009184 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAW 403 (541)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 403 (541)
..+...+.+|..+.++.||...+.+|+-.|+++-.+.. +..|-.++.+...-||+.|+.
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a------------------~diL~~L~~D~~dfVRQ~AmI 643 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA------------------TDILEALMYDTNDFVRQSAMI 643 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH------------------HHHHHHHhhCcHHHHHHHHHH
Confidence 34556677777776899999999999998886554332 233444456667788999999
Q ss_pred HHHHhccCCCHHHHHHHHHcCChHHHhhhcCC
Q 009184 404 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 435 (541)
Q Consensus 404 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 435 (541)
+++-+...++++.-... .++++.+.+++..
T Consensus 644 a~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~ 673 (926)
T COG5116 644 AVGMILMQCNPELNPNV--KRIIKKFNRVIVD 673 (926)
T ss_pred HHHHHHhhcCcccChhH--HHHHHHHHHHHhh
Confidence 99988876654322111 2344455554443
No 174
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.47 E-value=0.13 Score=43.46 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=97.4
Q ss_pred hHHHHHhcCChHHHHHhhcCCCh-----hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHH
Q 009184 193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACW 265 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~ 265 (541)
+...++..+++..|++++..... .++...++.++..|.++.-.........++..++...... |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 34566788899999999965543 4778888999999988753333334456677777776643 6889999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch
Q 009184 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (541)
Q Consensus 266 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 318 (541)
.|-++..+++...+.+.+.=-++.|+..|..++..++..|+..+..+....++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999988887777676666789999999999999999999988888765553
No 175
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.46 E-value=0.24 Score=51.48 Aligned_cols=194 Identities=13% Similarity=0.170 Sum_probs=136.1
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh
Q 009184 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (541)
Q Consensus 240 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 319 (541)
+...++|.|++++...|..++...+.-+-..... ..+..++..+++.+..-+.+.++.++...+.++..++..-...
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 5578999999999999999988766655544433 2234677789999999999999999999999999888643322
Q ss_pred HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK 399 (541)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 399 (541)
.++...+..+.++-.+. +..+|-...-+|+.++.......+ +.-......+.+.++-...|.
T Consensus 404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~R--------------~~vL~~aftralkdpf~paR~ 465 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASVR--------------KRVLASAFTRALKDPFVPARK 465 (690)
T ss_pred ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhhh--------------ccccchhhhhhhcCCCCCchh
Confidence 34444555555555544 778888888888888764322111 112233455556667778888
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhh
Q 009184 400 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE 458 (541)
Q Consensus 400 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~ 458 (541)
.+.+++......-.... +...+++.++.+.-+++..++..+..++...+...++.
T Consensus 466 a~v~~l~at~~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 466 AGVLALAATQEYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred hhhHHHhhcccccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 88888876654322221 45578889999988889889999988888887765554
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.45 E-value=0.016 Score=55.99 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=84.9
Q ss_pred CchHHHH-HhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHH
Q 009184 327 QALPCLL-NLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI 405 (541)
Q Consensus 327 ~~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL 405 (541)
+++..|+ +.+++. ++.+|..|..+||-++--+.+... ..++.+...+..++..++..|+.++
T Consensus 26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~----------------~~l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAK----------------EHLPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHH----------------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4454444 788888 899999999999999885554433 3466778888778999999999999
Q ss_pred HHhccCCCHHHHHHHH-------HcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184 406 SNATSGGTHEQIKFLV-------IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 406 ~nl~~~~~~~~~~~l~-------~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~ 456 (541)
..+............. ...+++.+...+.+.+++++..+.+++.+|+-.+.
T Consensus 89 ~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 89 FDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred HHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 9987533222222211 24578888999999999999999999999986553
No 177
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.023 Score=61.78 Aligned_cols=143 Identities=14% Similarity=0.189 Sum_probs=112.0
Q ss_pred cHHHHHHhhCC----CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184 286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (541)
Q Consensus 286 ~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (541)
+.|.++...+. .+|.++..|.-+|+.++.-+.+.. ..-++.|+..|...+++.+|..+.-+++.++...+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34455555533 568899999999999987665544 345788999998655999999999999999987776
Q ss_pred HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHH
Q 009184 362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 441 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 441 (541)
.++ -.-+.|.+.|.+.++.+|+.|.-.|.+|+..+ .+.-.|.+.....+|.++++.+.
T Consensus 995 lie----------------~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen 995 LIE----------------PWTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred ccc----------------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHH
Confidence 665 46678999999999999999999999998842 22347999999999999999988
Q ss_pred HHHHHHHHHHHHhh
Q 009184 442 TVCLEGLENILKVG 455 (541)
Q Consensus 442 ~~~l~~L~~l~~~~ 455 (541)
..+=..+..|...+
T Consensus 1053 dlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1053 DLAKSFFKELSSKG 1066 (1251)
T ss_pred HHHHHHHHHhhhcc
Confidence 77765555555444
No 178
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.44 E-value=0.23 Score=49.07 Aligned_cols=147 Identities=13% Similarity=0.192 Sum_probs=101.9
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHH-HHhccCChHHHHH
Q 009184 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQA 280 (541)
Q Consensus 202 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L-~~l~~~~~~~~~~ 280 (541)
++..++..|.++.+...+..|+.+|..+|+..+..-+....-.+..+++.-.+.++++...|..+. .-++...+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 355667777666889999999999999999987666655566666666666666666655554443 3344444422
Q ss_pred HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
-+..+..++...+......++..+..++..-+...-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 133444555556666777788888888865543322233357899999999998 89999999999998875
No 179
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.41 E-value=0.37 Score=51.95 Aligned_cols=198 Identities=15% Similarity=0.210 Sum_probs=116.1
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCchhHHHHH-hcCchHHHHHhhcCCCchh
Q 009184 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNYKKS 343 (541)
Q Consensus 266 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~ 343 (541)
++.+++...++....+++.|++..+...+.. .+..+...++..++|++........... +.--...+..++..-.+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 6777788888888999999999999999964 5677899999999999975533221111 1101122333443331335
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc
Q 009184 344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 423 (541)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 423 (541)
.-..|+..|+.+...+++... .. ....+......++........ .. .-.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~-----------~~---------------~r~~~~~~l~e~i~~~~~~~~----~~-~~~ 622 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE-----------CV---------------FRNSVNELLVEAISRWLTSEI----RV-IND 622 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc-----------cc---------------chHHHHHHHHHHhhccCccce----ee-hhh
Confidence 666677777777664333211 00 011222223333333322211 11 111
Q ss_pred CChHH-HhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc-CCCHHHHHHHHHH
Q 009184 424 GCIKP-LCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKL 500 (541)
Q Consensus 424 ~~i~~-L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~-~~~~~i~~~a~~i 500 (541)
..+.+ +..++. +..+..+..+++++.+++...+. |+..+.+.|++..++++.. +...++...+..+
T Consensus 623 ~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 623 RSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE-----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred hhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh-----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 22222 444443 34556777888888888865433 6788888999999988842 2366777777777
Q ss_pred HHHhC
Q 009184 501 LETYW 505 (541)
Q Consensus 501 l~~~~ 505 (541)
++...
T Consensus 692 i~~~~ 696 (699)
T KOG3665|consen 692 IESCE 696 (699)
T ss_pred hhccc
Confidence 76553
No 180
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.41 E-value=0.26 Score=47.59 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=116.5
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh--hhhchHHHHHHhhccCChhHHHHHHHHHHHhccC--ChHHHH
Q 009184 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQ 279 (541)
Q Consensus 204 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~--~~~~~~ 279 (541)
...+..+ .......+..++..+..+........+. ....+++.+.+.++.+..+-+.-|+.++.-++-. ......
T Consensus 46 ~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3344444 4455778888888888888765433322 2355778888888877766566666666665532 222233
Q ss_pred HHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHhhcC---CchhHHHHHhcCchHH--HHHhhcCC---------Cchh
Q 009184 280 AVIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVTG---DDMQTQCVIEYQALPC--LLNLLSGN---------YKKS 343 (541)
Q Consensus 280 ~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~---~~~~~~~~~~~~~l~~--L~~lL~~~---------~~~~ 343 (541)
.+++ .+.+.|.+.+.+.. ..+|..++.+|+-++.. ........++ .+.. .....+.. .++.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccH
Confidence 4444 57788888886654 45666777777766542 2222221111 2331 11222221 1356
Q ss_pred HHHHHHHHHHHHhcCChH-HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184 344 IKKEACWTVSNITAGNRE-QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 344 v~~~a~~~L~nl~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 411 (541)
+...|+.+.+-+...-+. .+. ..++ ..+|.|..+|.+.+.+||..|..+|.-+...
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~-----------~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLE-----------DLLE-EALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHH-----------HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 888888777777763333 233 3332 4689999999999999999999999877553
No 181
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.27 Score=48.86 Aligned_cols=268 Identities=15% Similarity=0.131 Sum_probs=144.3
Q ss_pred CChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 159 GAVPIFVKLL----YSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 159 g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
|.+..++..+ .+++..++..|+.+|+|.+...| +++... .-.+..++..|.+..+.+|+..++.+|..+....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 4554444443 34778999999999999998744 333332 2256777777767778889888888888776654
Q ss_pred CCCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH-HHH--hCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184 234 PQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA-VIE--AGVFPRLAEFLMHPSPSVLIPALRTV 309 (541)
Q Consensus 234 ~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~-~~~--~g~l~~L~~lL~~~~~~v~~~al~~L 309 (541)
...... ...++.-.+..+..+.+++++..+...++.|+.......+. +.+ .+-...++-.++++++.+ ..||+..
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~ 410 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSE 410 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHH
Confidence 332221 22344445777788899999999998888876432221111 121 122233444456666543 4556665
Q ss_pred hHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHH-HHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK-EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA 388 (541)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 388 (541)
...+.-+- ..+.+ .+.++. .++.. -+..+. ..-| ...+....++... .+. .....
T Consensus 411 ~~~c~p~l-~rke~--~~~~q~---~ld~~-~~~~q~Fyn~~-c~~L~~i~~d~l~-----------~~~-----t~~~~ 466 (533)
T KOG2032|consen 411 LRTCYPNL-VRKEL--YHLFQE---SLDTD-MARFQAFYNQW-CIQLNHIHPDILM-----------LLL-----TEDQH 466 (533)
T ss_pred HHhcCchh-HHHHH--HHHHhh---hhHHh-HHHHHHHHHHH-HHHHhhhCHHHHH-----------HHH-----Hhchh
Confidence 55543221 11111 112221 11111 111111 1111 1112222233222 111 12222
Q ss_pred HhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 389 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 389 ~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
++++.-+.++..+...-.++...-.+..+.+.--.-+...+..+...+-+++...+.+++..++.
T Consensus 467 ~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 467 IFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred heecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 33444445566555555565554444444443334456677778888889999999998887764
No 182
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.19 Score=53.16 Aligned_cols=218 Identities=10% Similarity=0.109 Sum_probs=134.1
Q ss_pred CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009184 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (541)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~ 291 (541)
.++.+.++..++..+..+.+...........+++......+.+.|+-|--+|+..+..||+..++ .+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 44556788899999999998765555566688999999999999999989999988888765443 4566666
Q ss_pred H-hhCCC---ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184 292 E-FLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM 367 (541)
Q Consensus 292 ~-lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 367 (541)
. ..... .++.+...-.++++++..-.+......+ -++...++.+..+ +...|..++..++++|.-..-...
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vs--- 883 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVS--- 883 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhh---
Confidence 5 33221 1233444445555555433322222222 4566677777776 788899999999999873332222
Q ss_pred hhchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHHH--HHcCChHHHhhhcCCCChH-HHHH
Q 009184 368 HVHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFL--VIQGCIKPLCDLLVCPDPR-IVTV 443 (541)
Q Consensus 368 ~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~i~~L~~lL~~~~~~-~~~~ 443 (541)
..+ ..++..++.+... +.+-+|+.|+..+..+..+...+....+ .-.+....+..+....+.+ +...
T Consensus 884 --------d~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klh 954 (982)
T KOG4653|consen 884 --------DFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLH 954 (982)
T ss_pred --------HHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 111 1244445555443 5689999999999999886544333322 1223444445554443332 3334
Q ss_pred HHHHHHHH
Q 009184 444 CLEGLENI 451 (541)
Q Consensus 444 ~l~~L~~l 451 (541)
+..++..+
T Consensus 955 aql~leei 962 (982)
T KOG4653|consen 955 AQLCLEEI 962 (982)
T ss_pred HHHHHHHH
Confidence 44444443
No 183
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.31 E-value=0.0086 Score=47.85 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=60.7
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 187 (541)
++..|+++|..++++....-|+.-|+.++...|..+..+-+.|+=..++.++.+++++|+..|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 58889999966555888889999999999988999998888899999999999999999999999988764
No 184
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.31 E-value=0.52 Score=45.46 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=114.2
Q ss_pred hchHHHHH-HhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hh
Q 009184 242 SPALPALA-HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQ 319 (541)
Q Consensus 242 ~~~l~~L~-~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~ 319 (541)
.+++..++ +.+++.+..++..++.+|+-.+--+.+... ..++.+...+..++..++..|++++..+..... ..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 36665544 778899999999999999988855543222 346677777777788999999999998875322 11
Q ss_pred HHH-------HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 320 TQC-------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 320 ~~~-------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
... .-...+++.+.+.+.+. +++++..|+..++.+...+.-.- ...++..|+-...+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---------------~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---------------PPKVLSRLLLLYFN 163 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---------------HHHHHHHHHHHHcC
Confidence 111 11245788889999998 89999999999999876321111 01244445444433
Q ss_pred ----CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC
Q 009184 393 ----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 436 (541)
Q Consensus 393 ----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 436 (541)
++.++|+.-...+-.++.. .+.+. ..+....++.+..+.+..
T Consensus 164 p~t~~~~~LrQ~L~~Ffp~y~~s-~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 164 PSTEDNQRLRQCLSVFFPVYASS-SPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred cccCCcHHHHHHHHHHHHHHHcC-CHHHH-HHHHHHHHHHHHHHHhCc
Confidence 2467888777777777775 44443 445556666666666553
No 185
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.49 Score=49.92 Aligned_cols=198 Identities=17% Similarity=0.094 Sum_probs=130.4
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-hhhHHHHHHHHhHhhcCCch
Q 009184 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDM 318 (541)
Q Consensus 240 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~al~~L~nl~~~~~~ 318 (541)
.-.++...|+.+.....+........+|..-...+.... ..+++.+.+.+.... ..-...++.++.|+++.++.
T Consensus 501 Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s 575 (748)
T KOG4151|consen 501 IKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALTNLASISES 575 (748)
T ss_pred ccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchh
Confidence 446788888888877766666666666652111111111 134455555554333 22345689999999998888
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHh-cCcHHHHHHHhhcCchhH
Q 009184 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIE-ANIIGPLVALLENAEFDI 397 (541)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v 397 (541)
..+.+.....++.+-.++... ++..+..++..+.|+.-+..-... .+.+ ..-++.....+...+...
T Consensus 576 ~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~-----------si~e~~~~l~~w~~~~e~~~E~~ 643 (748)
T KOG4151|consen 576 DRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYER-----------SIVEYKDRLKLWNLNLEVADEKF 643 (748)
T ss_pred hHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHH-----------HhhccccCchHHHHHHHhhhhHH
Confidence 777888888888888888877 899999999999999986443333 4444 345555555566666677
Q ss_pred HHHHHHHHHHhccCCCHHHHH-HHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 398 KKEAAWAISNATSGGTHEQIK-FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~~~~~~~-~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
..+++.++.-++.. ...++. .+--......+..++.++++.+....+..+.++...+
T Consensus 644 ~lA~a~a~a~I~sv-~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~ 701 (748)
T KOG4151|consen 644 ELAGAGALAAITSV-VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL 701 (748)
T ss_pred hhhccccccchhhc-chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence 77777776655543 334444 2233566788888999999988887777776655443
No 186
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.27 E-value=1 Score=49.01 Aligned_cols=241 Identities=17% Similarity=0.193 Sum_probs=142.3
Q ss_pred hchHHHHHHhhcc-----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh----CCCC----hhhHHHHHHH
Q 009184 242 SPALPALAHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL----MHPS----PSVLIPALRT 308 (541)
Q Consensus 242 ~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL----~~~~----~~v~~~al~~ 308 (541)
.+++..++.++.+ .+.+....++..|.+++.- ..+.+.+++.|+++.|+..+ ..+. ..+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 4566666666653 2345666667777776655 44567788899999998877 3333 5677777777
Q ss_pred HhHhhcCCchhHHHH----H--------hcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCChHHHHHHHhhchhh
Q 009184 309 VGNIVTGDDMQTQCV----I--------EYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373 (541)
Q Consensus 309 L~nl~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~ 373 (541)
+..+........... . +...+..+++.+.+.. ++.+....+.+|.+++.++.+.++
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~--------- 265 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD--------- 265 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH---------
Confidence 776665332111000 0 1123666777666542 578889999999999999999888
Q ss_pred HHHHHhcCcHHHHHHHh--hcCchhHHHHHHHHHHHhccCC-----CHHHHHHHHHcCChHHHhhhcCCCCh--------
Q 009184 374 IIAVIEANIIGPLVALL--ENAEFDIKKEAAWAISNATSGG-----THEQIKFLVIQGCIKPLCDLLVCPDP-------- 438 (541)
Q Consensus 374 ~~~l~~~~~l~~L~~~l--~~~~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~i~~L~~lL~~~~~-------- 438 (541)
.+++ .+.+.+++= ...+..--...+.+++.++.+- .......+++.|++...+++|...-|
T Consensus 266 --~Lv~--~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~ 341 (802)
T PF13764_consen 266 --ALVE--HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSP 341 (802)
T ss_pred --HHHH--HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCH
Confidence 5554 122222211 1111111122355555555422 13455667788998888887743211
Q ss_pred H--------HHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH-hcCCCHHHHHHHHHHHHHhCCCC
Q 009184 439 R--------IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLETYWLDD 508 (541)
Q Consensus 439 ~--------~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L-~~~~~~~i~~~a~~il~~~~~~~ 508 (541)
+ -...+|..|.-+...... .+.+...+++..+..| +.+....|-..|.++|+.+-+.+
T Consensus 342 eWk~~l~~psLp~iL~lL~GLa~gh~~------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 342 EWKEFLSRPSLPYILRLLRGLARGHEP------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhcCHH------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 1 233455555555544332 2222346677777777 44557888889989888776533
No 187
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.14 Score=54.19 Aligned_cols=228 Identities=13% Similarity=0.113 Sum_probs=143.9
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 71 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
+.+.+...+..+..+.+.++-.|+..+++++.. ......+...+++...++.|++.+ +-+-..|+..+..+|.-.+
T Consensus 725 ~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy~- 800 (982)
T KOG4653|consen 725 DIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVYP- 800 (982)
T ss_pred cHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhcc-
Confidence 445567777788888888999999999999864 244445557889999999999998 8888889988888876433
Q ss_pred HHHHHHhCCChHHHHHhh-CC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHH
Q 009184 151 HTKVVIDHGAVPIFVKLL-YS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL-~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L 226 (541)
..++|.|...- +. ..++.+-.+-.++.+++....+....-.. -.+..+++.+ ++++...+..++..+
T Consensus 801 -------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~l 871 (982)
T KOG4653|consen 801 -------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANL 871 (982)
T ss_pred -------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHH
Confidence 34678787743 32 21344444556777776332221111111 2456677777 567888899999999
Q ss_pred HhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhC-CCChhh
Q 009184 227 SNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLM-HPSPSV 301 (541)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~-~~~~~v 301 (541)
.++|+-....-......++..++.+...+ ..-++..|.-.+..+..+.....-.+... +....+.+... +++..+
T Consensus 872 g~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~ 951 (982)
T KOG4653|consen 872 GQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGL 951 (982)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 99997653333334556666677776654 45678888888887775544222222211 23333444443 344455
Q ss_pred HHHHHHHHhH
Q 009184 302 LIPALRTVGN 311 (541)
Q Consensus 302 ~~~al~~L~n 311 (541)
+..|+.++-.
T Consensus 952 klhaql~lee 961 (982)
T KOG4653|consen 952 KLHAQLCLEE 961 (982)
T ss_pred HHHHHHHHHH
Confidence 5566555543
No 188
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.25 E-value=0.6 Score=50.69 Aligned_cols=210 Identities=15% Similarity=0.176 Sum_probs=128.2
Q ss_pred hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---CCCh----hhHHHHHHH
Q 009184 157 DHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATW 224 (541)
Q Consensus 157 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~~~~----~~~~~~a~~ 224 (541)
+.|++..++.++.+ ....+....+..|..+|. -+.+|..+++.|+++.|+..+. .... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 46889989888866 234555556666655554 4668999999999999998884 2222 566666666
Q ss_pred HHHhhhcCCCCCChh-------------hhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 009184 225 TLSNFCRGKPQPPFD-------------QVSPALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287 (541)
Q Consensus 225 ~L~~l~~~~~~~~~~-------------~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 287 (541)
++-.+.......... ....-+..++..+.+ .++.+....++.|-+|+.+..+..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 665554432111110 123345666666654 368899999999999999998887776652 2
Q ss_pred HHHHHhh--CCCChhhHHHHHHHHhHhhcCC------chhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184 288 PRLAEFL--MHPSPSVLIPALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (541)
Q Consensus 288 ~~L~~lL--~~~~~~v~~~al~~L~nl~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (541)
...+++= +.....--...+.+++.++.+- ....+.+++.|++...+..|... -|.. ....
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~~ 339 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNTD 339 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccCC
Confidence 2222221 1111111123356666666543 24567788999999888888766 4433 1112
Q ss_pred hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
++... .++....+|.++.+|..
T Consensus 340 s~eWk-----------~~l~~psLp~iL~lL~G 361 (802)
T PF13764_consen 340 SPEWK-----------EFLSRPSLPYILRLLRG 361 (802)
T ss_pred CHHHH-----------HHhcCCcHHHHHHHHHH
Confidence 33334 56667778887777753
No 189
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.24 E-value=0.21 Score=45.90 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHHHHccCCCCcHHHHH--hcCCHHHHHHhh-------cCCC-c---HHHHHHHHHHHHHHhcCChhHH
Q 009184 86 DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFL-------LRED-Y---PQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL-------~~~~-~---~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+++.+..|+..|.+--.. .+....++ .-|.+..|++=+ +.+. + ..-...|+..|..+++ .|+.+
T Consensus 8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence 578899999999876432 34444333 467777776533 2221 1 1333455666667777 69999
Q ss_pred HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHH
Q 009184 153 KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L 226 (541)
..++++.+.-.|..+|.. +.+.+|-.++..+|.+.. ++++.-..+++.+++|..++.+ ..+++-.+..|+.++
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence 999999877777777754 237788899999999984 5667778888999999999999 555666677778777
Q ss_pred HhhhcCCCC--------CChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhccCChH
Q 009184 227 SNFCRGKPQ--------PPFDQVSPALPALAH-LIHSNDDEVLTDACWALSYLSDGTND 276 (541)
Q Consensus 227 ~~l~~~~~~--------~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~~~~~ 276 (541)
..+..++.. ..+..+..++..++. +...+++.+...+++|...|++++..
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 776655311 112223333443333 34567888999999999999987654
No 190
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=2 Score=45.18 Aligned_cols=300 Identities=15% Similarity=0.091 Sum_probs=168.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CChhhHHHHHhcCChHH
Q 009184 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAG--DSPRCRDLVLSQGGLVP 205 (541)
Q Consensus 136 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~r~~i~~~g~i~~ 205 (541)
.|+.++..+.+..++.+ + .|+++.+...|.. +++.-.+.|++.++++.. ..+....-+++.-+++.
T Consensus 389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 45555555555333332 1 3788988888832 345556778888888764 22222222334334555
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (541)
Q Consensus 206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 285 (541)
++..+ ++..--++..+|..++.+..+ -++......+.+...+++.+++-.|+..|+-|+..+..+.. ......+.
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sah 539 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAH 539 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhh
Confidence 55555 667778899999999999544 33334456677777888888888899999989887765442 33344444
Q ss_pred cHHHHHHhh---CCCChhhHHHHHHHH-hHhhcCCchhHHHHH---hcCchHHHHHhhcCCC-----chhHHHHHHHHHH
Q 009184 286 VFPRLAEFL---MHPSPSVLIPALRTV-GNIVTGDDMQTQCVI---EYQALPCLLNLLSGNY-----KKSIKKEACWTVS 353 (541)
Q Consensus 286 ~l~~L~~lL---~~~~~~v~~~al~~L-~nl~~~~~~~~~~~~---~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~ 353 (541)
+.+.+-++| +.-+.++...++..+ +..+..-......+. -..++.....++.+++ ..+-+..|...|.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 444444444 333333333333322 222211111111111 1123333444444331 1133445555555
Q ss_pred HHhc------CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 009184 354 NITA------GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 427 (541)
Q Consensus 354 nl~~------~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~ 427 (541)
.+.+ ..+...+ -+.....|.+--+++..-.++-.+|+..+-+.+... ..+. =+.=|+.+
T Consensus 620 T~~smiLSlen~p~vLk------------~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s--keI~-pimwgi~E 684 (970)
T COG5656 620 TIESMILSLENRPLVLK------------YLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS--KEIE-PIMWGIFE 684 (970)
T ss_pred HHHHHHHhcccchHHHH------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH--HHhh-hhhhHHHH
Confidence 5543 2333332 233355666666677777788888888887765421 1111 12236677
Q ss_pred HHhhhcCCCCh-HHHHHHHHHHHHHHHhhHhhh
Q 009184 428 PLCDLLVCPDP-RIVTVCLEGLENILKVGEAEK 459 (541)
Q Consensus 428 ~L~~lL~~~~~-~~~~~~l~~L~~l~~~~~~~~ 459 (541)
.+.+++..+++ ...+.+..++.+++.+|....
T Consensus 685 ll~~~l~~~~t~~y~ee~~~al~nfityG~~ef 717 (970)
T COG5656 685 LLLNLLIDEITAVYSEEVADALDNFITYGKTEF 717 (970)
T ss_pred HHHhcccccchhhhHHHHHHHHHHHHHhCcccc
Confidence 77777777764 667777889999999886543
No 191
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.20 E-value=1.9 Score=44.56 Aligned_cols=287 Identities=13% Similarity=0.096 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (541)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 166 (541)
-..+..|+..++..+...+-.++.. +...--+++....+++.|..+...|..++........... ..+.+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence 3467778888887776543333332 2444445666665578899999999888875433111111 11222
Q ss_pred hhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC--------------------------CChhhHH
Q 009184 167 LLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------------------QPKLSML 219 (541)
Q Consensus 167 lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~--------------------------~~~~~~~ 219 (541)
.+. ...++-...-+.+|..|+.++..... .+.+..+.+...+.. +.+....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 222 23333344556666667666554411 355566666655511 0123344
Q ss_pred HHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhh
Q 009184 220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFL 294 (541)
Q Consensus 220 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL 294 (541)
...+..+.++.+.. .......+.+++..+..+.. +.++.....++..+-.+... +.+... .++..|....
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~ 226 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence 45555666666555 33444555666666666543 33344444444444333321 222211 2333444443
Q ss_pred CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCChHH-HHHHHh
Q 009184 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQ-IQVIMH 368 (541)
Q Consensus 295 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~ 368 (541)
... +....+-+++.||+...-.+ ..+..|..+|..+ .+..+.+-|+..+..+..+..+. +.
T Consensus 227 ~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~---- 293 (464)
T PF11864_consen 227 NSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYP---- 293 (464)
T ss_pred ccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcc----
Confidence 222 67778888888888643322 2345677777322 14456677888888877754222 21
Q ss_pred hchhhHHHHHhc--CcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 369 VHAFSIIAVIEA--NIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 369 ~~~~~~~~l~~~--~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
.+--. -+++.+...++..+..+-.+++..+.++..
T Consensus 294 -------~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 294 -------SLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred -------eecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 22122 378888889988888888888888888874
No 192
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.07 E-value=0.5 Score=42.66 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC----CcHHHHHHHHHHHHHHhcCC-hhHHHHHHhCCCh
Q 009184 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGT-SEHTKVVIDHGAV 161 (541)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~----~~~~i~~~a~~~L~~l~~~~-~~~~~~i~~~g~i 161 (541)
+.-...|+..+.-++|. .+....+.++.+=-.|-.+|... ..+.+|..++.+++.+...+ .+....+...+++
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 34456777777777765 56666777776544555555432 23779999999999998844 4555666788999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-------CChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-------g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
|..++.+...++.-+..|..++..|..++....-..... -.+..++..+.+.++..+..+++.+..+|+.+.
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999987775432221111 123444444446778888889999988888763
No 193
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.03 E-value=0.45 Score=47.05 Aligned_cols=174 Identities=11% Similarity=0.108 Sum_probs=106.4
Q ss_pred hhhHHHHHHH-HHHhhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009184 215 KLSMLRNATW-TLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (541)
Q Consensus 215 ~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ 292 (541)
..+-+..|+. ...-+|.+.-.........++..++..|.. .+..++.-|++.|..++...+....--.+ -.+..++.
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence 3344455555 333444443333344456777788888876 67778999999999999776643221111 23444444
Q ss_pred hhCCCChhhHHHHHHH-HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhc
Q 009184 293 FLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVH 370 (541)
Q Consensus 293 lL~~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~ 370 (541)
.-.+....+...|... +.-+++..+... +..+..++.+. +...-..++..+..++.. +.+...
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~------ 443 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELL------ 443 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHH------
Confidence 4455555555555444 334444444332 33345555555 555555666677777763 333332
Q ss_pred hhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 371 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
.++ ..+.|.+++...+.+..||+.|+++|..+..
T Consensus 444 -----~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 444 -----NLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----Hhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 333 3799999999999999999999999998864
No 194
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.84 E-value=0.68 Score=42.87 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~ 209 (541)
......|+.+|.-++--.|..+..+.....+..|+.+|.. ..+.++..++.+|..+..+++.....+-+.+++..+..+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 3455668889999888889999999999999999999954 678999999999999999999888888899999999999
Q ss_pred hcC-CChhhHHHHHHHHHHhhhcCC
Q 009184 210 LNG-QPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 210 l~~-~~~~~~~~~a~~~L~~l~~~~ 233 (541)
++. +.+.+++-.++..|.-+....
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHccc
Confidence 953 456778778887777666544
No 195
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.75 E-value=0.084 Score=38.32 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHHHHHc
Q 009184 345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 423 (541)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 423 (541)
.+.|.|+++++++ ++..+. .+.+.++++.++++... +...+|-.|.++|+-++. +.+..+.|-+.
T Consensus 4 lKaaLWaighIgs-s~~G~~-----------lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQ-----------LLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHH-----------HHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHc
Confidence 5789999999988 456666 66678999999999875 568999999999999887 56666666555
Q ss_pred C
Q 009184 424 G 424 (541)
Q Consensus 424 ~ 424 (541)
|
T Consensus 70 g 70 (73)
T PF14668_consen 70 G 70 (73)
T ss_pred C
Confidence 4
No 196
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.75 E-value=0.52 Score=46.74 Aligned_cols=275 Identities=17% Similarity=0.139 Sum_probs=141.1
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHH-HHHhhhcCCCCCCh
Q 009184 161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPF 238 (541)
Q Consensus 161 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~ 238 (541)
+.+++.-+.+ ....+|..++.-|+.-+.+.. +|..+...|....+++.+...++..+...++. ++.-++++.+....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~-Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQ-FRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHH-HHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4555555553 556788888888888887554 89999999999999999955554434444444 44445555454444
Q ss_pred hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh---------CCCChhhHHHHHHH
Q 009184 239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL---------MHPSPSVLIPALRT 308 (541)
Q Consensus 239 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL---------~~~~~~v~~~al~~ 308 (541)
......+..+..++... ...+...... ..........+ +.+..+...+ .+...+-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~-------~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDS-------SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhh-------hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 34455666667777611 0000000000 00000011111 1222222222 11233445566666
Q ss_pred HhHhhc--------------CCchhHHHHHhcCchHHHHHhhcC----CC-----------chhHHHHHHHHHHHHhcCC
Q 009184 309 VGNIVT--------------GDDMQTQCVIEYQALPCLLNLLSG----NY-----------KKSIKKEACWTVSNITAGN 359 (541)
Q Consensus 309 L~nl~~--------------~~~~~~~~~~~~~~l~~L~~lL~~----~~-----------~~~v~~~a~~~L~nl~~~~ 359 (541)
+-.++. ..+...+.+...|+++.++..+.. .. +...-..++.+|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 666631 111223455667889999888852 10 1122344566677776654
Q ss_pred hHHHHHHHhhchhhHHHHH--hcCcHHHHHHH----hhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH----
Q 009184 360 REQIQVIMHVHAFSIIAVI--EANIIGPLVAL----LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL---- 429 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~--~~~~l~~L~~~----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L---- 429 (541)
.+... +++ ..+.++.+... .......+...++..+.|++.. ++..+..+...++...+
T Consensus 254 ~~nq~-----------~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~ 321 (361)
T PF07814_consen 254 EENQS-----------YLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIV 321 (361)
T ss_pred ccchH-----------HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHH
Confidence 54444 333 22333333332 2223355567889999999875 44444444433222211
Q ss_pred ---hhhcCC-------CChHHHHHHHHHHHHHHHhhH
Q 009184 430 ---CDLLVC-------PDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 430 ---~~lL~~-------~~~~~~~~~l~~L~~l~~~~~ 456 (541)
..++.. ..-+++..+++++.|+....+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 322 TSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred HhhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence 111111 112566677777777776543
No 197
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.70 E-value=2 Score=42.02 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=115.6
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--Cc--------hhH
Q 009184 329 LPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AE--------FDI 397 (541)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~--------~~v 397 (541)
++.+.+.|... +..+...+...|..++. .+......++...+|.. ..++.+...=.. .+ +.+
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~------~~l~kll~~~~~~~~~~~~~~~~~~si 130 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSL------KSLPKLLTPRKKEKEKDSESSKSKPSI 130 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCch------hhHHHHhccccccccccccccccCcCH
Confidence 77888899888 77788899999999998 66565552222222221 233334322111 11 289
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhc
Q 009184 398 KKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA 476 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 476 (541)
|...+..+..+...+++.....+.+ .+.+..+..-+..++++++..+|.+|..=+-..+..+.. ....+-..
T Consensus 131 R~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~-------~K~~~fn~ 203 (330)
T PF11707_consen 131 RTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS-------TKCKLFNE 203 (330)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh-------hhhhhcCH
Confidence 9999999999988888887777775 577999999999888899999999888533333222211 12233335
Q ss_pred chHHHHHHHhcCCCH----HHHHHHHHHHHHhCCCCC
Q 009184 477 EGLEKIESLQTHDNA----EIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 477 ~~~~~l~~L~~~~~~----~i~~~a~~il~~~~~~~~ 509 (541)
..+.+|..|....++ .+.+.+...+..++..-.
T Consensus 204 ~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 204 WTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 578888889888888 999999999998876433
No 198
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.69 E-value=0.84 Score=46.50 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=79.6
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (541)
Q Consensus 238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 317 (541)
...+.+.+-.++..+.+.|..|+..+|..|..+.+.-.+ +...+-.|++..|.+-+-+..+.+|..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 445677777888888899999999999999988865332 3445556888889888888999999999999998864322
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (541)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (541)
..- ..+...|..+++++++.+||..|..-
T Consensus 165 nee-----n~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 111 12344677788877688899876543
No 199
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.64 E-value=0.14 Score=43.94 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=98.0
Q ss_pred HHHHHhhC--CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHH
Q 009184 288 PRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV 365 (541)
Q Consensus 288 ~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (541)
+.++..|. ...++++..++-++..+. +... .-....+-+.+-.++... +.+-...++.+++.+.-+.++...
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~-~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~- 79 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAAR-EEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS- 79 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH-
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhH-HHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH-
Confidence 44444443 356678999988888884 2111 222233445566666665 666778899999999888888877
Q ss_pred HHhhchhhHHHHH-hcCcHHHHHHHhh--cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChH-H
Q 009184 366 IMHVHAFSIIAVI-EANIIGPLVALLE--NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPR-I 440 (541)
Q Consensus 366 ~~~~~~~~~~~l~-~~~~l~~L~~~l~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~-~ 440 (541)
.++ ..|+++.++.++. +.+..++..++.+|..-+. +...+. .+...+++.|.++++. ++.. +
T Consensus 80 ----------~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~-~I~~~~~~~L~~~~~~~~~~~~i 146 (157)
T PF11701_consen 80 ----------ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRT-FISKNYVSWLKELYKNSKDDSEI 146 (157)
T ss_dssp ----------HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHH-CCHHHCHHHHHHHTTTCC-HH-C
T ss_pred ----------HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHH-HHHHHHHHHHHHHHccccchHHH
Confidence 666 7799999999998 7788999999999988776 334444 4555678899999854 4444 5
Q ss_pred HHHHHHHHHH
Q 009184 441 VTVCLEGLEN 450 (541)
Q Consensus 441 ~~~~l~~L~~ 450 (541)
+..++-+|.+
T Consensus 147 r~~A~v~L~K 156 (157)
T PF11701_consen 147 RVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5555555543
No 200
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.1 Score=52.49 Aligned_cols=151 Identities=22% Similarity=0.304 Sum_probs=103.7
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 009184 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201 (541)
Q Consensus 123 ~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g 201 (541)
+++.+.+ +-++...+..++.--.++. +.|++..|+.. .+..+.++++.|..+|+-+|.+++.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 6777776666655444322 23667778777 6678899999999999999977653
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHH
Q 009184 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281 (541)
Q Consensus 202 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 281 (541)
.+...+.+|..+.+..++...+.+|...|.+.. ...++..|-.++.....-|+..|+.+++.+..........-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 456667777678889999999999998888742 23456667777777888899999999988764333221111
Q ss_pred HHhCcHHHHHHhhCCC
Q 009184 282 IEAGVFPRLAEFLMHP 297 (541)
Q Consensus 282 ~~~g~l~~L~~lL~~~ 297 (541)
+ .++...+.+.+.+.
T Consensus 660 v-~~I~k~f~~vI~~K 674 (926)
T COG5116 660 V-KRIIKKFNRVIVDK 674 (926)
T ss_pred H-HHHHHHHHHHHhhh
Confidence 1 15666677776543
No 201
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.59 E-value=1 Score=45.54 Aligned_cols=259 Identities=14% Similarity=0.138 Sum_probs=148.5
Q ss_pred HHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-
Q 009184 92 ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS- 170 (541)
Q Consensus 92 ~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~- 170 (541)
.+...|.+++......+....++...+..|+.++.++| +.-|...-.+|.++-......+..+.. .+...|.+++..
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~ 186 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence 34455555554322222333556667899999999999 999999999999988766667766654 345666677654
Q ss_pred CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHH
Q 009184 171 PSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALA 249 (541)
Q Consensus 171 ~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~ 249 (541)
....-...++..++.+..+-. +.++..... ....++.+.....-.........++..++..+|. ....++..++
T Consensus 187 ~~~~gI~elLeil~sii~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~ll 261 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLL 261 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHH
Confidence 445555668888888875422 232221111 1233344443333444566777777777765432 2233334444
Q ss_pred HhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh---
Q 009184 250 HLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--- 325 (541)
Q Consensus 250 ~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~--- 325 (541)
+.--..+..-..--+.-+..+... ++.....+ ...++..+...+.+++..|.+.|+..+.| +... .++.
T Consensus 262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~ 334 (409)
T PF01603_consen 262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNS 334 (409)
T ss_dssp HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTH
T ss_pred HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhCh
Confidence 333234444333344444454443 23333322 23577888888999999999999877643 2222 2222
Q ss_pred cCchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCChHHHH
Q 009184 326 YQALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 326 ~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
..++|.+...|.... +..++..|..++.-+..-+++..+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence 236777777765421 568999999998888877676554
No 202
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.53 E-value=0.019 Score=33.96 Aligned_cols=29 Identities=45% Similarity=0.697 Sum_probs=25.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009184 160 AVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (541)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 188 (541)
++|.++++++++++++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999874
No 203
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.40 E-value=0.026 Score=33.40 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=25.7
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 4789999999998 9999999999999975
No 204
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.37 E-value=0.49 Score=47.03 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=104.8
Q ss_pred CcHHHHHh-cCCHHHHHHhhcCCC--cHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC-C---CCHHHHHHH
Q 009184 107 PPIEEVIR-SGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-S---PSDDVREQA 179 (541)
Q Consensus 107 ~~~~~~i~-~g~i~~Lv~lL~~~~--~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~v~~~a 179 (541)
...+.+++ ..+...|...+++.. -+.+-..|+.+++.+....|.....+.+.|+++.++..+. . ++.++....
T Consensus 96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l 175 (379)
T PF06025_consen 96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL 175 (379)
T ss_pred cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence 34556666 666777777787654 2688899999999999988999999999999999999887 3 677888888
Q ss_pred HHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChh------hHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHh
Q 009184 180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL------SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL 251 (541)
Q Consensus 180 ~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 251 (541)
-.+|+.||-+.. ..+.+.+.+.++.+++++...... +.....-..+-.|.++.|.-.......++..+-++
T Consensus 176 P~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l 252 (379)
T PF06025_consen 176 PNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRL 252 (379)
T ss_pred HHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 889999997766 556677788999999988432211 34455556677788887655544444444444333
No 205
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.33 E-value=0.16 Score=43.72 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=90.1
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
.+++.|+++|+.+.++.++.+++++|+.|..-+|...+.+... .+.-. -...+........... ++.... +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCch----H
Confidence 4678899999988779999999999999998776655533221 11000 0111122222222111 111111 2
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 271 (541)
......++..|++.|.+..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2223336788888885444444455677777777755544556777899999999999777788887777776654
No 206
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.23 E-value=0.14 Score=45.57 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=79.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC--------CcHHHHHHHHHHHHHHh
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIA 145 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~--------~~~~i~~~a~~~L~~l~ 145 (541)
....+++.+.+..... ..+..|+..+......-++.+++.|++..|+++|..- .+...+.+++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3456777787654432 5666666666543223377888889999999988531 23678999999999998
Q ss_pred cCChhHHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009184 146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (541)
Q Consensus 146 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 187 (541)
. +......++. .+++..|+..|.+++..++..++..|..+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 4555666665 689999999999999999999999999887
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.17 E-value=0.15 Score=43.89 Aligned_cols=146 Identities=17% Similarity=0.144 Sum_probs=99.5
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 75 l~~l~~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+..++..|.. ..++++-.++-++.+++... ..-...-+-+.+-.++..++ .+-...++.+++.+--+.++..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-----~~~~~~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAA-----REEFKEKISDFIESLLDEGE-MDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCCHHHH
Confidence 3455665553 56778889999988886321 11111222333344454444 5567788889999988888888
Q ss_pred HHHH-hCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhh-HHHHHHHHHHh
Q 009184 153 KVVI-DHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSN 228 (541)
Q Consensus 153 ~~i~-~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~-~~~~a~~~L~~ 228 (541)
..++ ..|.++.++.++. ..+..++..++.+|..-|.+.. +|..+.+. +++-|-..+..+++.. ++..|+-+|+.
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~-~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS-CRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH-HHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH-HHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 8777 5688899999998 6888888888888887766654 88888777 5777777775566565 77777666654
No 208
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.03 E-value=0.1 Score=37.93 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 009184 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201 (541)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g 201 (541)
...|+|+++++++ ++.....+.+.++++.++++... +...+|-.|.++|+-++.... ..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence 4679999999998 56666666678999999998875 788999999999999986654 445544443
No 209
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.97 E-value=0.49 Score=43.79 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHccCCCCcHHH-HHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh
Q 009184 89 VQYECTTQFRKLLSIERSPPIEE-VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (541)
Q Consensus 89 ~~~~a~~~l~~l~~~~~~~~~~~-~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 167 (541)
....|++.|.-++-- +|+.+. +-+...+..|+++|.....+.++..++.+|..+..+++.+...+-+.+++..++.+
T Consensus 107 li~~aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 107 LIALALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 455677888877765 455554 44788999999999655458999999999999999999999999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHHHhhCCC
Q 009184 168 LYS--PSDDVREQAVWALGNIAGDS 190 (541)
Q Consensus 168 L~~--~~~~v~~~a~~~L~nl~~~~ 190 (541)
+++ .+.+++-.++.+|.-...+.
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHccc
Confidence 987 46778888887777665443
No 210
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.92 E-value=2.6 Score=39.73 Aligned_cols=204 Identities=12% Similarity=0.107 Sum_probs=131.3
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHhhcCCCh-hhHHHHHHHHHHhh
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQPK-LSMLRNATWTLSNF 229 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~--g~i~~Ll~~l~~~~~-~~~~~~a~~~L~~l 229 (541)
..+.++|.+..|++.+..-+-+-+..++....|+-+.....|....+. .-.+.+-.++....+ +++.-.+...+...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 345678999999999988777888888888888864333222221111 012333333422332 45555555555544
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhhCCCChhhHHHH
Q 009184 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPA 305 (541)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~v~~~a 305 (541)
.+...-.........+......++.+.-++..+|..++..+.......+..+..... .+.--.++.+++.-++..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 444332223333445555666666677788899999988876554444444444432 3335567788999999999
Q ss_pred HHHHhHhhcCCc---hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 306 LRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 306 l~~L~nl~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
+..+|.+.-+.+ ..++.+-...-+..++.+|+.+ ...++.+|.....-..+
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 999999986554 2334454557788999999998 88999999988877777
No 211
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.88 E-value=3.2 Score=38.40 Aligned_cols=202 Identities=21% Similarity=0.163 Sum_probs=117.4
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 009184 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 197 (541)
++.|+.-+....++..+...+.+|..++......... ++..|..+...+....+..+...+..+-...+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 4555554444445999999999999999854222222 34666667777777776667777777765444211
Q ss_pred HhcCChHHHHHhh---------cCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHH
Q 009184 198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL 267 (541)
Q Consensus 198 ~~~g~i~~Ll~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L 267 (541)
+.+..++..+ ..+...+.......++..+|...|. .....++.+..++ .+.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444441 1122344555556788889988765 4466778888888 777888899999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCCchh-HHHHHhcCchHHHHHhhcCC
Q 009184 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ-TQCVIEYQALPCLLNLLSGN 339 (541)
Q Consensus 268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~-~~~~~~~~~l~~L~~lL~~~ 339 (541)
..++....- . +. .....+.+-|..+ .+.+....+..++.+..+.-+. ........++..+-++..+.
T Consensus 147 ~~Lc~~~vv--d-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEVV--D-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhhc--c-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 999833211 1 11 2233444444333 3455554444444444332211 11223445566666666555
No 212
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.74 E-value=1.2 Score=46.49 Aligned_cols=258 Identities=13% Similarity=0.120 Sum_probs=159.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHHH
Q 009184 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV 154 (541)
Q Consensus 76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (541)
-.+++.++..+.+.+..=...|.+.+.. --+.++...++|.|+..+..++ ..++.. .+.-++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~lt-pl~k~~k~ld~-~e---- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLT-PLFKLGKDLDE-EE---- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhh-HHHHhhhhccc-cc----
Confidence 3444555556666665555555543321 2234555667777777766554 122222 22222222221 22
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (541)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~ 234 (541)
...+++|.|++++...+..+|-..+.-+-+.... ..+.+++..+++.+...+ .++++.++...+.++..|+..-.
T Consensus 327 -yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 -YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred -cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhc
Confidence 4557899999999999999987766666655543 334556666888888888 88899999999999888876532
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
.. ......+..+..+=..++..++.+..-|++.++...... +.+.-+...+.+-+.++-..-|..++..+.....
T Consensus 402 ~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 402 KR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred hh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 11 222344555554444456778888888888877553221 1222223344555677777778888877766554
Q ss_pred CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
..+. .-+...+++.+..+..+. +..+|..|..++...-.
T Consensus 477 ~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 4332 223457888888888887 88888888777665544
No 213
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.72 E-value=0.85 Score=49.57 Aligned_cols=194 Identities=14% Similarity=0.066 Sum_probs=132.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 241 (541)
+.|..-+.+++..-|..|+..+..+..... ........|.+..++.....+.+..+...++.+|..++..-........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344444455667777778888877775544 1111223344566666666788899999999999999887644445566
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch-hH
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QT 320 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~ 320 (541)
...+|.++.-+......++..+..++-.++.... -....+.+...+++.++.++..+...+.......+. ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 7888888888887777776666665544443111 124567888899999999999988888887765541 11
Q ss_pred HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHH
Q 009184 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQ 364 (541)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~ 364 (541)
..---.+.++.++....+. +..||..|..+++-+.. .+...+.
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1111246778888888888 89999999999988876 3444444
No 214
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.63 E-value=0.52 Score=48.87 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=106.1
Q ss_pred hHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCCch
Q 009184 244 ALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDM 318 (541)
Q Consensus 244 ~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~ 318 (541)
.-|.......+ +|++++..|..+|..+..-+.+. +. .-+|.++..|. +++|.+|..|+-.+|.++-.-..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34445555544 67888888888887765544332 22 45788888885 89999999999999988765443
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHH
Q 009184 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK 398 (541)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 398 (541)
..+ ..-..|.+-|.+. +..||+.+..++.++.-.+.-.++ |-++.+...|.++|.++.
T Consensus 968 ~~d-----e~t~yLyrrL~De-~~~V~rtclmti~fLilagq~KVK----------------Gqlg~ma~~L~deda~Is 1025 (1128)
T COG5098 968 TAD-----EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQLKVK----------------GQLGKMALLLTDEDAEIS 1025 (1128)
T ss_pred hhH-----HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccceeec----------------cchhhhHhhccCCcchHH
Confidence 332 2334677788887 899999999999999875444444 888999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 009184 399 KEAAWAISNATSGG 412 (541)
Q Consensus 399 ~~a~~aL~nl~~~~ 412 (541)
..|-..+..++...
T Consensus 1026 dmar~fft~~a~Kd 1039 (1128)
T COG5098 1026 DMARHFFTQIAKKD 1039 (1128)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988754
No 215
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.62 E-value=3.3 Score=41.30 Aligned_cols=124 Identities=18% Similarity=0.288 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcc---CChHHHHHHHH-hCcHHHHHHhhCCCC---hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHH
Q 009184 259 VLTDACWALSYLSD---GTNDKIQAVIE-AGVFPRLAEFLMHPS---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331 (541)
Q Consensus 259 v~~~a~~~L~~l~~---~~~~~~~~~~~-~g~l~~L~~lL~~~~---~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~ 331 (541)
.+...+..+..+.. +..+...-+++ ..++..|..++.+.. +.+...|+.++..+....+.....+.+.|+.+.
T Consensus 76 llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~ 155 (379)
T PF06025_consen 76 LLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDA 155 (379)
T ss_pred HHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHH
Confidence 33444445554444 33344455666 566777777887754 678889999999999988888878889999999
Q ss_pred HHHhhc-CC--CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc
Q 009184 332 LLNLLS-GN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE 394 (541)
Q Consensus 332 L~~lL~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~ 394 (541)
++..+. .. ...++-...-.+++.||- +....+ .+.+.+.++.+++++.+++
T Consensus 156 ~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~-----------~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 156 FLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLE-----------KVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHH-----------HHHhcChHHHHHHHhCCHH
Confidence 999998 33 134555555667777776 466677 8888899999999987654
No 216
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.61 E-value=1.5 Score=43.56 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=82.0
Q ss_pred HHHHHHhhccCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCChhhHHHHHHHHhHhhcCCc
Q 009184 245 LPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALRTVGNIVTGDD 317 (541)
Q Consensus 245 l~~L~~lL~~~d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~ 317 (541)
.+.+..-+...| ...+..|+..+..++.........++ ...+..++. ..+|.-+..|+..++.++....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~ 287 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS 287 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence 344444444333 34567777788888754332222111 122333332 3567788899999999987553
Q ss_pred h------------hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-hHHHHHHHhhchhhHHHHHhcCcHH
Q 009184 318 M------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQVIMHVHAFSIIAVIEANIIG 384 (541)
Q Consensus 318 ~------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~~~~~~l~~~~~l~ 384 (541)
. ....++...++|-|. - ..+..|-++..|++.+..+-..- +++.. +++|
T Consensus 288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~~~l~----------------~~~~ 349 (370)
T PF08506_consen 288 TTKSGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPKEQLL----------------QIFP 349 (370)
T ss_dssp -BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HHHHH----------------HHHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCHHHHH----------------HHHH
Confidence 2 123344445555554 1 22227889999999999987743 33322 5899
Q ss_pred HHHHHhhcCchhHHHHHHHHH
Q 009184 385 PLVALLENAEFDIKKEAAWAI 405 (541)
Q Consensus 385 ~L~~~l~~~~~~v~~~a~~aL 405 (541)
.++..|.+++.-|...|+.++
T Consensus 350 ~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 350 LLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhCCCCcchhhhhhhhC
Confidence 999999999988999998875
No 217
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.58 E-value=9.7 Score=43.78 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=92.2
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
+++|.|..-|.+++..+|..|+..+|.+......+.. --........+.-+.+. +..||.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889999889999999999999999999876653321 00123455566666677 889999999999998886665444
Q ss_pred HHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184 365 VIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 444 (541)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~ 444 (541)
.. ++...+.... .|++++.....++..+.. ....-.++.. ++....+-+.+....|+..|
T Consensus 337 -----------~~---~~~~~l~~~~--~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~A 396 (1266)
T KOG1525|consen 337 -----------AS---TILLALRERD--LDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQA 396 (1266)
T ss_pred -----------HH---HHHHHHHhhc--CChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHH
Confidence 21 2222222222 344443322222211111 0111112223 56666667777888999999
Q ss_pred HHHHHHHHH
Q 009184 445 LEGLENILK 453 (541)
Q Consensus 445 l~~L~~l~~ 453 (541)
+..|..+.+
T Consensus 397 m~~LaqlYk 405 (1266)
T KOG1525|consen 397 MNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHH
Confidence 998888877
No 218
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=2.5 Score=44.16 Aligned_cols=225 Identities=14% Similarity=0.123 Sum_probs=132.8
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhh----hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHH
Q 009184 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV----SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279 (541)
Q Consensus 205 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~----~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~ 279 (541)
.|.+-| +-.+..++.+|+..+.++.--. |....... ..-...+..+|.++-+.|+..|...++.+...- -
T Consensus 178 ~l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----W 252 (1005)
T KOG1949|consen 178 ILWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF----W 252 (1005)
T ss_pred HHHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----H
Confidence 344445 6778999999999999886433 44333333 344556888999999999998887776654321 1
Q ss_pred HHHHh----CcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184 280 AVIEA----GVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (541)
Q Consensus 280 ~~~~~----g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (541)
.++-. .++..+..-+ .+...++|......|..+........ +++ .++|.+-..|.+. ...||.++...|..
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~--~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP--LLE-QLLPALRYSLHDN-SEKVRVAFVDMLLK 328 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh--HHH-HHHHhcchhhhcc-chhHHHHHHHHHHH
Confidence 11111 2334444434 23456899999999988887554332 332 4566777777777 88999999999988
Q ss_pred HhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC------HHHHHHHHHc--CCh
Q 009184 355 ITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT------HEQIKFLVIQ--GCI 426 (541)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~------~~~~~~l~~~--~~i 426 (541)
|-..... .+.+---...++..|..++.++.+..+..|.+.....+ -+.+.+|++. .+.
T Consensus 329 ik~vra~--------------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~ 394 (1005)
T KOG1949|consen 329 IKAVRAA--------------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAA 394 (1005)
T ss_pred HHhhhhh--------------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHH
Confidence 8553222 22222234455556666666666666666666553221 1234445543 234
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184 427 KPLCDLLVCPDPRIVTVCLEGLENIL 452 (541)
Q Consensus 427 ~~L~~lL~~~~~~~~~~~l~~L~~l~ 452 (541)
..+++++.......+..++..++.++
T Consensus 395 ~rf~~~l~~~~~~~~~~~~hlI~~fl 420 (1005)
T KOG1949|consen 395 RRFYQYLHEHTATNIAKLIHLIRHFL 420 (1005)
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHH
Confidence 55666665544222333444444443
No 219
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.49 E-value=2.9 Score=43.78 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=74.9
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHH
Q 009184 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQI 363 (541)
Q Consensus 285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~ 363 (541)
|.+..+++...+++..+|..+|.+|..++....+.-+.+ -.++...+..-+.+. .+.||.+|+.+|+.+-. ...+.+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCCcc
Confidence 677788888888899999999999998887443332223 346666777777777 89999999999999974 222223
Q ss_pred HHHHhhchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHH
Q 009184 364 QVIMHVHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISN 407 (541)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~n 407 (541)
.++..+..+++. ++++||+.|+..|.+
T Consensus 163 -----------------~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 163 -----------------PVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred -----------------cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 255667777765 578999977665543
No 220
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.42 E-value=4.4 Score=40.51 Aligned_cols=190 Identities=11% Similarity=0.045 Sum_probs=111.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc--HHHHHhcCCHHHHHHhhcCCC----cH--HHHHHHHHHHHHHhcCC
Q 009184 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED----YP--QLQFEAAWALTNIASGT 148 (541)
Q Consensus 77 ~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~i~~g~i~~Lv~lL~~~~----~~--~i~~~a~~~L~~l~~~~ 148 (541)
.+...+.....+.++.|+-...++....+-.. .+.+.+.-+.+.+-.+|.+.+ .| -.+.-++.+|+.+|..
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 45556666777889999999999987653322 334667777888888887643 12 2445566777777773
Q ss_pred hhHH--HHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHH
Q 009184 149 SEHT--KVVIDHGAVPIFVKLLYS-PS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219 (541)
Q Consensus 149 ~~~~--~~i~~~g~i~~L~~lL~~-~~------~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~ 219 (541)
++.. ..++ +.||.|+.+++. .+ -.+.+.+-.+|..+++..+. ...++..|+++.+.+.-....-..-.
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhH
Confidence 4432 2233 458999998865 22 34788899999999988664 45566788999888654222111111
Q ss_pred HHHHHHHHhhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 009184 220 RNATWTLSNFCRGKP--QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (541)
Q Consensus 220 ~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 270 (541)
..++.++.-+...-. .........++..+..-+...+.......|..|..+
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222222222221110 111111222344444444455667778888888744
No 221
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.42 E-value=0.18 Score=51.99 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=98.5
Q ss_pred CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHH
Q 009184 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIA 376 (541)
Q Consensus 297 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~ 376 (541)
.++.++..|.-+|..+.+-+.+.. ..-+|.++..+...++|.+|..|+-.++.++......++
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d------------ 970 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD------------ 970 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH------------
Confidence 577888888888888876554433 346888999998544999999999999998875443333
Q ss_pred HHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 377 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 377 l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
..-..|.+-|.+.+..||+.|.-.+.+++..|- +.-.|-+..+..+|.++|..+...|-..+..+....
T Consensus 971 ----e~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 971 ----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred ----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 234578888888999999999999999987542 122577788888899988887777666666555443
No 222
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.40 E-value=1.7 Score=47.43 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=129.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (541)
Q Consensus 76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i 155 (541)
+.+-..+.+.++..+.+|+..+...++..+ ....-...|.+-.++.....+.+..+...|+.+|..|+..........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 444456678899999999999999987542 111111245566666666555558899999999999998653332222
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC-
Q 009184 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP- 234 (541)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~- 234 (541)
..+..|.|+.-+......+++.+..++-.++...+ -....+.++..+ ++.++.++..+...+....+...
T Consensus 334 -~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 -AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred -HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 23677889998888888888887777776664222 112466677777 78888888776666655555432
Q ss_pred -CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 235 -QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 235 -~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
.........++|.++....+.+.+|+..+..++.-+..
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 23334567889999999989999999999998877653
No 223
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.34 E-value=6.1 Score=39.25 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=59.3
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCChhhHH
Q 009184 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWAL-GNIAGDSPRCRD 195 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~r~ 195 (541)
+..+++=|.++.+..+|..++--|+.-+. +++++..+...|....+++.+.. ++..+...++.++ .-++.+.. ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 44555556644447888888888888777 69999999999999999999854 3332444443344 34444443 344
Q ss_pred HHHhcCChHHHHHhhc
Q 009184 196 LVLSQGGLVPLLAQLN 211 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~ 211 (541)
.+.+.+....+++++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 4445555555566663
No 224
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.24 E-value=4 Score=41.27 Aligned_cols=254 Identities=13% Similarity=0.036 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhcCChhH-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC
Q 009184 134 QFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (541)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~ 212 (541)
...+...|..+....+.. ....++...+..|+.++.++++.-|+....+|.++.+.-...|..+... +...+.+.+..
T Consensus 107 L~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e 185 (409)
T PF01603_consen 107 LQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYE 185 (409)
T ss_dssp HHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcC
Confidence 344555555555532221 1223344567889999999999999999999999887666677776544 56667777756
Q ss_pred CChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009184 213 QPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (541)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L 290 (541)
.....-...++.++..+..+...+- .....-....++.|.....- ..-.....++......++..... ++..+
T Consensus 186 ~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~l 260 (409)
T PF01603_consen 186 TERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGL 260 (409)
T ss_dssp TS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHH
T ss_pred cccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHH
Confidence 6677778888888998888764333 23333344556666655532 23344444555444444433332 23334
Q ss_pred HHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 009184 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370 (541)
Q Consensus 291 ~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 370 (541)
++.--..+..-...-+.-+..+....+...-.-+...++..+...+.+. +..|-..|+..+.|= ...
T Consensus 261 lk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~~~------- 327 (409)
T PF01603_consen 261 LKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----YFL------- 327 (409)
T ss_dssp HHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----HHH-------
T ss_pred HHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----HHH-------
Confidence 4444334444444455556666554332211222335677788888888 888877777654432 111
Q ss_pred hhhHHHHHhc---CcHHHHHHHhhc-----CchhHHHHHHHHHHHhccC
Q 009184 371 AFSIIAVIEA---NIIGPLVALLEN-----AEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 371 ~~~~~~l~~~---~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~ 411 (541)
.++.. .++|.++..+.. -+..|+..|..++.-+...
T Consensus 328 -----~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 328 -----SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp -----HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred -----HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 22211 256666666533 2567888888887777653
No 225
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.23 E-value=4.4 Score=37.47 Aligned_cols=204 Identities=16% Similarity=0.095 Sum_probs=116.5
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009184 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (541)
Q Consensus 203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 282 (541)
++.++..+.+..++..+...+.+|..++..+. .....++..+..+...+..+...-+...+..+....+...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34455556678899999999999999998861 3335566777777777776665566666666665544322
Q ss_pred HhCcHHHHHHh-----h---C--CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh-cCCCchhHHHHHHHH
Q 009184 283 EAGVFPRLAEF-----L---M--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWT 351 (541)
Q Consensus 283 ~~g~l~~L~~l-----L---~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~ 351 (541)
+.+..++.. . . +..+........++..++...++.. ...++.+..+| .+. ++.++..++.+
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~-~~~~~alale~ 145 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSC-DEVAQALALEA 145 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 233333333 1 1 1223444444567777777666532 23567788888 666 88888999999
Q ss_pred HHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhccCC-CHHHHHHHHHcCChHHH
Q 009184 352 VSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGG-THEQIKFLVIQGCIKPL 429 (541)
Q Consensus 352 L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L 429 (541)
+..++.. +.++ +. .....+..-+..+ .+.+.+..+..+..+..+. +.+.... ....++..+
T Consensus 146 l~~Lc~~--~vvd------------~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~l 208 (234)
T PF12530_consen 146 LAPLCEA--EVVD------------FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLL 208 (234)
T ss_pred HHHHHHH--hhcc------------HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHH
Confidence 9999842 2221 00 1222233333332 4555555444444443332 2222222 344567777
Q ss_pred hhhcCCCChH
Q 009184 430 CDLLVCPDPR 439 (541)
Q Consensus 430 ~~lL~~~~~~ 439 (541)
-++..+.+.+
T Consensus 209 W~~~~~~~~~ 218 (234)
T PF12530_consen 209 WEYTSSSDVN 218 (234)
T ss_pred Hhhccccccc
Confidence 7777666643
No 226
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.14 E-value=6.9 Score=39.09 Aligned_cols=264 Identities=14% Similarity=0.122 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCC-cHHHHHhcCCHHHHHHhhc----C------CCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 84 SNDSGVQYECTTQFRKLLSIERSP-PIEEVIRSGVVPRFVEFLL----R------EDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~-~~~~~i~~g~i~~Lv~lL~----~------~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+.+...+..|...|.+.+....+. ..+.+.+ -++.++++++ + +.+..+..+|+.+|+.+.. +++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence 445566677777777666654332 3333322 2445555443 1 1136788999999999887 34444
Q ss_pred HHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---C-CChhhHHHHHH
Q 009184 153 KVVIDHG---AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNAT 223 (541)
Q Consensus 153 ~~i~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~-~~~~~~~~~a~ 223 (541)
..+-+.- ++...+..+.. .+..+....+|+|..=- +...++....+..++..+. + -++..+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 4333211 34445555544 45677777777776422 2122333334455554442 2 45677788888
Q ss_pred HHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc--cCChH-HHHH---HHHh----C-----cHH
Q 009184 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS--DGTND-KIQA---VIEA----G-----VFP 288 (541)
Q Consensus 224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~--~~~~~-~~~~---~~~~----g-----~l~ 288 (541)
.++.+|....|..-......-+|.++..+-+....++..|...+..+. -.... .... ..+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 888888877554433334446677777766667777666555544433 11111 1111 1111 2 333
Q ss_pred HHHHhhCCCChhhHHHHHHH-HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 289 RLAEFLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 289 ~L~~lL~~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
++..++.+.+.....+-+|. +.-+. +......--.-...+...-..+.++ ++.+|.+|..+...+..
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 45556655332222222222 22222 2221110111124555566677777 89999988877666654
No 227
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.03 E-value=6.6 Score=38.49 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=108.8
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhc-CCchhHHHHHhc--CchHHHHHhhcCCC----c--------hhHHHHHHHH
Q 009184 287 FPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEY--QALPCLLNLLSGNY----K--------KSIKKEACWT 351 (541)
Q Consensus 287 l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~--~~l~~L~~lL~~~~----~--------~~v~~~a~~~ 351 (541)
++.+.+.|......+..++++.|..++. ........++.. --.+.+.+++.... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888889998888899999999999999 554666666543 12344555553321 1 2788777766
Q ss_pred HHHHhc-CChHHHHHHHhhchhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC---HHHHHHHHHcCCh
Q 009184 352 VSNITA-GNREQIQVIMHVHAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGT---HEQIKFLVIQGCI 426 (541)
Q Consensus 352 L~nl~~-~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~i 426 (541)
+..+.. +++.... .++ +.+.+..+++-|..+++++....+.+|..-+.... ....-.+.....+
T Consensus 138 ~Lsfl~~~~~~~~~-----------~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L 206 (330)
T PF11707_consen 138 WLSFLSSGDPELKR-----------DLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTL 206 (330)
T ss_pred HHHHHccCCHHHHH-----------HHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHH
Confidence 555555 6666666 555 56778899999998889999999999986443221 2233334456678
Q ss_pred HHHhhhcCCCCh----HHHHHHHHHHHHHHH
Q 009184 427 KPLCDLLVCPDP----RIVTVCLEGLENILK 453 (541)
Q Consensus 427 ~~L~~lL~~~~~----~~~~~~l~~L~~l~~ 453 (541)
..|..+....++ .+...+-+.|..++.
T Consensus 207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 207 SQLASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 899998888777 677777777766663
No 228
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.65 E-value=6.8 Score=46.87 Aligned_cols=265 Identities=11% Similarity=0.109 Sum_probs=141.1
Q ss_pred CCCHHHHHHHHHHHHHhhCC---ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHH
Q 009184 170 SPSDDVREQAVWALGNIAGD---SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP 246 (541)
Q Consensus 170 ~~~~~v~~~a~~~L~nl~~~---~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 246 (541)
+++..+...|+..|..++.. .++....-.+..++.++..++....+.++++.++.++.++...... .+..+..
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence 34566777777777676631 1111111223446788888887778889999999999988765421 2223444
Q ss_pred HHHHhh----ccCChhHHHHHHHHHHHhccCChHHHHHHHH--h----CcHHHHHHhhCCC-ChhhHHHHHHHHhHhhc-
Q 009184 247 ALAHLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIE--A----GVFPRLAEFLMHP-SPSVLIPALRTVGNIVT- 314 (541)
Q Consensus 247 ~L~~lL----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~----g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~- 314 (541)
.+..++ ...++.+...+..++..+....- ..+.. . .++..+..+.... +.++-..|+..|.+++.
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 444444 34567777777777776653211 11110 1 2334444444333 35566666666664421
Q ss_pred ---CCc-----------------------hhH-----HHHHhcCchHHHHH---hhcCCCchhHHHHHHHHHHHHhcC--
Q 009184 315 ---GDD-----------------------MQT-----QCVIEYQALPCLLN---LLSGNYKKSIKKEACWTVSNITAG-- 358 (541)
Q Consensus 315 ---~~~-----------------------~~~-----~~~~~~~~l~~L~~---lL~~~~~~~v~~~a~~~L~nl~~~-- 358 (541)
+.- ... .......+++.|.. +..+. +++||..|+.+|-.+...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhh
Confidence 000 000 00001234444443 34555 899999999999888752
Q ss_pred ---ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC------------------c--------hhHHHHHHHHHHHhc
Q 009184 359 ---NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA------------------E--------FDIKKEAAWAISNAT 409 (541)
Q Consensus 359 ---~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~------------------~--------~~v~~~a~~aL~nl~ 409 (541)
+++... .++. +++-+++..+... + .+....|+..+.++.
T Consensus 1380 ~~Fs~~~W~-----------~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf 1447 (1780)
T PLN03076 1380 HLFSLPLWE-----------RVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF 1447 (1780)
T ss_pred ccCCHHHHH-----------HHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 222222 3333 4555555554321 0 122333444444443
Q ss_pred cCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184 410 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 410 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~ 456 (541)
.. --+.+..+. .+++..|..++..++..+......+|.+|+..+.
T Consensus 1448 t~-fFd~L~~~L-~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1448 VK-FYPTVNPLL-KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HH-HHHHHHHHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 31 111112211 2566677777778888888889999999886543
No 229
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=1 Score=42.24 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=105.2
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 321 (541)
...+...+..|.+.|.+...+.+..+..|+....+.....+. .++-.+++-+++....+...||.+++.+.+.-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788899999999999999998776655444443 5677778888888899999999999999876654443
Q ss_pred HHHhcCchHHHHHhh-cCC--CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHH
Q 009184 322 CVIEYQALPCLLNLL-SGN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK 398 (541)
Q Consensus 322 ~~~~~~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 398 (541)
.. ++.++..| ... .+.-++..|-.+|..+..+-..+ .+++.|+..+....+.++
T Consensus 166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------------------~~L~~L~~~~~~~n~r~r 222 (334)
T KOG2933|consen 166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------------------KLLRKLIPILQHSNPRVR 222 (334)
T ss_pred HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------------------HHHHHHHHHHhhhchhhh
Confidence 32 23333333 221 14568899999999888743332 246777777888889999
Q ss_pred HHHHHHHHHhccC
Q 009184 399 KEAAWAISNATSG 411 (541)
Q Consensus 399 ~~a~~aL~nl~~~ 411 (541)
..++.++.++...
T Consensus 223 ~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 223 AKAALCFSRCVIR 235 (334)
T ss_pred hhhhcccccccee
Confidence 9998888887653
No 230
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=4.2 Score=42.31 Aligned_cols=320 Identities=14% Similarity=0.175 Sum_probs=162.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
++..+=+.+.++++.++--|+-.+.-..++-.++ . ..++-.|.+.+++++ ..++..|+.-|+-.-+++ +++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 4555555666666655555554443222221111 0 113556677788877 788888887777665543 233
Q ss_pred HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
.+.. .|..++.+ ...++...|..+|+.+...+.. ..+ .+.++..++..=.........+-....|..+.-
T Consensus 487 ~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 3321 34455555 3356777788888887644321 111 111344444432111223333333334444433
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---hhhHHHHHHH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIPALRT 308 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~~~al~~ 308 (541)
+.. ..+...+.-+..-...+...+-..+..++.....+.-.+-+ ..+..+-.... ..-...|+.-
T Consensus 559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence 321 12222222222222233332222222222221111111111 22222222221 1223356666
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA 388 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 388 (541)
++-++.+.+-..+.. +..+-++|..+ ++.+|+..=.+++-++..+|. . +++..|-+
T Consensus 627 iAliAMgeeig~eM~-----lR~f~h~l~yg-e~~iRravPLal~llsvSNPq-~-----------------~vlDtLsk 682 (878)
T KOG2005|consen 627 IALIAMGEEIGSEMV-----LRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQ-V-----------------NVLDTLSK 682 (878)
T ss_pred hhhhhhhhhhhhHHH-----HHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCc-c-----------------hHHHHHHH
Confidence 666666666444433 44677788888 999999999999988876654 3 36778888
Q ss_pred HhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc-CCCChHHHHHHHHHHHHH
Q 009184 389 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VCPDPRIVTVCLEGLENI 451 (541)
Q Consensus 389 ~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~~~~~~~~~~l~~L~~l 451 (541)
.....|.++...++.+++-+-.+.+...+.. +++.|.++- +.++.-.+..+..+|..+
T Consensus 683 ~shd~D~eva~naIfamGLiGAGTnNARla~-----mLrqlaSYyyKd~~~Lf~vriAQGL~hl 741 (878)
T KOG2005|consen 683 FSHDGDLEVAMNAIFAMGLIGAGTNNARLAQ-----MLRQLASYYYKDSKALFVVRIAQGLVHL 741 (878)
T ss_pred hccCcchHHHHHHHHHhccccCCcchHHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 8888899999999999998877655444333 334444432 223333333444555443
No 231
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.42 E-value=2.1 Score=38.00 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=93.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
-++.+++...+++..++..|+..+..++..+=..|.+ .+|.|+.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 3678888888999999999999999988765334443 5999999999988 99999999999999886555544
Q ss_pred HHHhCCChHHHHHh---hCCCCH-HH---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-------ChhhHH
Q 009184 154 VVIDHGAVPIFVKL---LYSPSD-DV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------PKLSML 219 (541)
Q Consensus 154 ~i~~~g~i~~L~~l---L~~~~~-~v---~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-------~~~~~~ 219 (541)
.-...| +..-..+ +..+.. .. ....+..+..+...+...|..+ +..+++.+... ....-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 433333 2222222 222111 11 4455666667776555556554 45566655322 123345
Q ss_pred HHHHHHHHhhhcC
Q 009184 220 RNATWTLSNFCRG 232 (541)
Q Consensus 220 ~~a~~~L~~l~~~ 232 (541)
...+++..||+.-
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 5555566666544
No 232
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.31 E-value=1.7 Score=45.56 Aligned_cols=210 Identities=14% Similarity=0.133 Sum_probs=123.8
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009184 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (541)
Q Consensus 215 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL 294 (541)
++.-+..-+..|..+.-+.| .......++|.|+..+.+ ....-..+-.+..++...+. ......+++.|..++
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp--~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFP--ARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIY 358 (700)
T ss_pred CcHHHHHHHHHHHHhhccCC--HHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccch---hhhhhhhhHHHHHHh
Confidence 33334444445555554432 223446778887777733 22333333333344433321 123346778888888
Q ss_pred CCCC-hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhh
Q 009184 295 MHPS-PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373 (541)
Q Consensus 295 ~~~~-~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~ 373 (541)
+..+ ..+....+.-+.-|....+ ..-+...+++.|...+++. +..++..++..+..++..-+.
T Consensus 359 ~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD~------------ 422 (700)
T KOG2137|consen 359 SASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESIDV------------ 422 (700)
T ss_pred ccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhccH------------
Confidence 6432 2222222222222222111 1223457888999999998 999999999999988762121
Q ss_pred HHHHHhcCcHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184 374 IIAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 452 (541)
Q Consensus 374 ~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~ 452 (541)
..+..-++|.|..+.. ..+..++..++-|+..++.. +....--..+.++....+..|+.++...+.+..++.
T Consensus 423 --~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 423 --PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred --HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 4556678888888743 45789999999999988732 111112234667777778889998888888887776
Q ss_pred Hh
Q 009184 453 KV 454 (541)
Q Consensus 453 ~~ 454 (541)
-.
T Consensus 496 ~~ 497 (700)
T KOG2137|consen 496 LI 497 (700)
T ss_pred hh
Confidence 43
No 233
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.29 E-value=3.5 Score=44.52 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=92.0
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccC---Ch
Q 009184 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTDACWALSYLSDG---TN 275 (541)
Q Consensus 203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~---~~ 275 (541)
+..+..++.. ....-. .+.+.|..+......+. ...+..+..++.+ .++.+...|+-+++.+... ..
T Consensus 397 v~~i~~~I~~-~~~~~~-ea~~~l~~l~~~~~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 397 VKFIKDLIKS-KKLTDD-EAAQLLASLPFHVRRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHT-T-S-HH-HHHHHHHHHHHT---------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHc-CCCCHH-HHHHHHHHHHhhcCCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 4455555533 222212 23344444444332333 3344555555543 3556777777777766521 10
Q ss_pred ------HHHHHHHHhCcHHHHHHhhC----CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC--Cchh
Q 009184 276 ------DKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKS 343 (541)
Q Consensus 276 ------~~~~~~~~~g~l~~L~~lL~----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~ 343 (541)
......+...+++.+...+. ..+..-+..++++|||+... ..++.|..++... ....
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchH
Confidence 00011122245666666654 45667788899999999641 2455666666544 2678
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--CchhHHHHHHHHHHHh
Q 009184 344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNA 408 (541)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl 408 (541)
+|..|+|+|..++...++.+. +.|+.++.+ .++++|..|..+|...
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~v~-------------------~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEKVR-------------------EILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHHHH-------------------HHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCcHHHH-------------------HHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 999999999999776665444 556666665 3688999998877764
No 234
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=14 Score=39.57 Aligned_cols=273 Identities=11% Similarity=0.103 Sum_probs=132.9
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hH
Q 009184 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CR 194 (541)
Q Consensus 119 ~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~r 194 (541)
..++++++..++--++..+++.+.-...+-.-..+.+.. .+....+.+++.. ..-+.+...+..|+.+.....+ .+
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 345566666644566677777776666543222222221 1233344445544 4456667777777777643222 11
Q ss_pred HHHHhcCChHHHHHhh-cCC-ChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChh---HHHHHHHHHHH
Q 009184 195 DLVLSQGGLVPLLAQL-NGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTDACWALSY 269 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l-~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~~L~~ 269 (541)
.... .+-.++..+ ..+ +.+-++...+.++.++...-.........-++|.+-....-+.++ ..+++...-.-
T Consensus 609 P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~ 685 (978)
T KOG1993|consen 609 PYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT 685 (978)
T ss_pred HHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Confidence 1111 111122222 222 344456666778888877643333333333334333333222222 34443322222
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc-CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 009184 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (541)
Q Consensus 270 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 348 (541)
...+.+.....++ +++|.+...+......++ .++.++....- .+.... .-...|++..+..++.+- ..+-....
T Consensus 686 ~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dv-r~egl~av 760 (978)
T KOG1993|consen 686 TLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDV-RNEGLQAV 760 (978)
T ss_pred HHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 2222221111122 567777777755443322 23333322221 122111 112346777788887665 44455556
Q ss_pred HHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--CchhHHHHHHHHHHHhccC
Q 009184 349 CWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 349 ~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~ 411 (541)
+.++..+...++ ... .+...++++.+...+-. +.|.+-..-+..++.+...
T Consensus 761 Lkiveili~t~~-il~-----------~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~ 813 (978)
T KOG1993|consen 761 LKIVEILIKTNP-ILG-----------SLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR 813 (978)
T ss_pred HHHHHHHHhhhH-HHH-----------hhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence 666666665444 444 66677888888776533 3466777777777777665
No 235
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.05 E-value=4.4 Score=43.24 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=82.7
Q ss_pred hchHHHHHHhhccC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhh----CCCChhhHHHHHHHH
Q 009184 242 SPALPALAHLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVFPRLAEFL----MHPSPSVLIPALRTV 309 (541)
Q Consensus 242 ~~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~l~~L~~lL----~~~~~~v~~~al~~L 309 (541)
...+..+..++.++ ...+...++-+++.+.. ..+..-..+ -..+++.+...| ...+...+..++++|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 34566666666643 45566777777766652 221100111 123555555554 334555677889999
Q ss_pred hHhhcCCchhHHHHHhcCchHHHHHhhcC--CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSG--NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
||+.... .++.+...+.. .....+|..|+|+|..++...+..++ +.|+
T Consensus 471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-------------------~~l~ 520 (574)
T smart00638 471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ-------------------EVLL 520 (574)
T ss_pred hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH-------------------HHHH
Confidence 9987532 23344444441 12568999999999999875555444 4566
Q ss_pred HHhhc--CchhHHHHHHHHHHHh
Q 009184 388 ALLEN--AEFDIKKEAAWAISNA 408 (541)
Q Consensus 388 ~~l~~--~~~~v~~~a~~aL~nl 408 (541)
.++.+ .++++|..|+.+|...
T Consensus 521 ~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 521 PIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHcCCCCChHHHHHHHHHHHhc
Confidence 66655 4689999998888765
No 236
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.86 E-value=3.8 Score=43.12 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=95.0
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCc
Q 009184 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDD 317 (541)
Q Consensus 239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~ 317 (541)
.....++|.|..-+.+.+..++..++..+...++.-+. .+++.-++|++..+. .+.+..++..++-|++.++..-+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888999999999999888765542 255667888887764 56778899999999999983222
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc
Q 009184 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE 394 (541)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~ 394 (541)
.. .++ ..+..+....+.. ++.+......+..++....... . .++..+++|.++-+...+.
T Consensus 462 ~~--~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~-----------ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KA--AVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-V-----------EVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HH--HhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-e-----------eeehhhhhhhhhhhhhccc
Confidence 11 121 2344555556666 8888877777777776633332 2 4555688898888877664
No 237
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.75 E-value=14 Score=38.28 Aligned_cols=258 Identities=12% Similarity=0.061 Sum_probs=131.0
Q ss_pred hhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 009184 81 GVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (541)
Q Consensus 81 ~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g 159 (541)
.+.. ...+.|..++..+..+......... .. =..+...+.....++.-..-+.+|..++.+..+. ...+.+
T Consensus 36 Li~~~~p~e~R~~~~~ll~~~i~~~~~~~~--~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~ 107 (464)
T PF11864_consen 36 LIDPNQPSEARRAALELLIACIKRQDSSSG--LM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYE 107 (464)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHccccccH--HH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccc
Confidence 3443 3467888888888888765422111 11 1122233343322332223334444444433333 224567
Q ss_pred ChHHHHHhhCCC---------------------------CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC
Q 009184 160 AVPIFVKLLYSP---------------------------SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (541)
Q Consensus 160 ~i~~L~~lL~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~ 212 (541)
+.+.|...+..- +.......+..+.|+...+...-+.-.-.+.+..++.+..+
T Consensus 108 i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~ 187 (464)
T PF11864_consen 108 IGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKS 187 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Confidence 778777776321 12223344445555554332211111112244444445434
Q ss_pred CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009184 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (541)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ 292 (541)
+.++.....++.++-.+......+ ......++..|...... .+....+-.++.+|+...... ..+..|..
T Consensus 188 Ts~~~di~~~L~vldaii~y~~iP-~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~ 257 (464)
T PF11864_consen 188 TSSEDDIEACLSVLDAIITYGDIP-SESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCD 257 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHcCcCC-hHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHH
Confidence 445555556666665555443111 12223334443333222 244455556777777543322 24566777
Q ss_pred hhCC------CChhhHHHHHHHHhHhhcCCchhHHHHHh-c--CchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 293 FLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIE-Y--QALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 293 lL~~------~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
+|.+ .+..+..-|+..++.+..+..+....-+. . -+++.+...++.. ++.+-.+....+.++..
T Consensus 258 iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 258 ILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred HHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 7732 23456778899999888777332222221 1 2778888888887 77777788888887773
No 238
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.58 E-value=6.6 Score=36.95 Aligned_cols=218 Identities=15% Similarity=0.127 Sum_probs=120.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 009184 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVL 198 (541)
Q Consensus 121 Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~ 198 (541)
|=..|.+++ +.+|..|+.+|+.+...-+... +...-+..|+.++.+ .+......++.++..+.....-.....
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 445678887 9999999999999887544321 222224555555433 455555556777777763332111110
Q ss_pred hcCChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChH
Q 009184 199 SQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTND 276 (541)
Q Consensus 199 ~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~ 276 (541)
..++..+..... +......+..+...+..+...........-...+..+++.+.. .||+-+.-+...+..+...-+-
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 012223332221 1223445666677777776653211122224566667777664 4787666666666655433220
Q ss_pred HHHHHHHhCcHHHHHHhhC--------C-C-Ch--hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhH
Q 009184 277 KIQAVIEAGVFPRLAEFLM--------H-P-SP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (541)
Q Consensus 277 ~~~~~~~~g~l~~L~~lL~--------~-~-~~--~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 344 (541)
....+.+...+. . + ++ -.+..--..|.+....++... .-.+|.|+.-|.++ .+.+
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV 224 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence 123333333331 1 1 21 233344445555555444333 34688999999998 8889
Q ss_pred HHHHHHHHHHHhc
Q 009184 345 KKEACWTVSNITA 357 (541)
Q Consensus 345 ~~~a~~~L~nl~~ 357 (541)
|..++.+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999887
No 239
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.42 E-value=2.5 Score=45.71 Aligned_cols=195 Identities=20% Similarity=0.212 Sum_probs=120.2
Q ss_pred HHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHH--HHHHhhccCCh-h
Q 009184 182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDD-E 258 (541)
Q Consensus 182 ~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~lL~~~d~-~ 258 (541)
+|+++....+.....+++.|+...+...+......+++..++..+.+++...+..........+. .+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 67788888888888888999999999999777888999999999999998764433333222222 33334444444 7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHH-HHHhhc
Q 009184 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC-LLNLLS 337 (541)
Q Consensus 259 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~-L~~lL~ 337 (541)
....++..|+.+....++....... +.+......++........ ..... ..+.. +.+++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~~---~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSEI---RVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccce---eehhh-hhcchhHHHHhc
Confidence 7777887777776544321111111 1122222233333322221 11111 22222 555665
Q ss_pred CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHH
Q 009184 338 GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAIS 406 (541)
Q Consensus 338 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~ 406 (541)
.+..+..+.-|.|++.+++...++..+ .+.+.++++.+.+.-... ..+++.++...+-
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCK-----------LVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhh-----------hhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 554678889999999999998787776 677888888877764332 4455555554443
No 240
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=4.7 Score=42.26 Aligned_cols=230 Identities=13% Similarity=0.071 Sum_probs=131.1
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC---CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc--
Q 009184 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD-- 272 (541)
Q Consensus 198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~-- 272 (541)
++.|++..++..-..-+...+....-.+|+.+.... .........-.-|.|..-|+-.+..|+.+|+..+.++--
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 356667766655433333334444444455554432 111122223344667777888999999999999988752
Q ss_pred CCh---HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcC----chHHHHHhhcCCCchhHH
Q 009184 273 GTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ----ALPCLLNLLSGNYKKSIK 345 (541)
Q Consensus 273 ~~~---~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~~v~ 345 (541)
+++ +..+.+++ .-...+.++|.++.+.+|..|..-++.+.+.- ..++-.. ++..+..-+..+...+||
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 222 22333444 34678899999999999999988777766421 1222222 333444444444356788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCC
Q 009184 346 KEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 425 (541)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 425 (541)
......|..+...... . .+++ .++|.|=..|.+....||..+...|..+-.. ....+.+---
T Consensus 281 ~svf~gl~~~l~np~s--h-----------~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v----ra~~f~~I~~ 342 (1005)
T KOG1949|consen 281 CSVFKGLPMILDNPLS--H-----------PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV----RAAKFWKICP 342 (1005)
T ss_pred hhHhcCcHHHHcCccc--h-----------hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh----hhhhhhcccc
Confidence 8888888877763221 1 2222 3556666677777888998888888776331 1111122223
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHH
Q 009184 426 IKPLCDLLVCPDPRIVTVCLEGLEN 450 (541)
Q Consensus 426 i~~L~~lL~~~~~~~~~~~l~~L~~ 450 (541)
++.++.-|..++..+....+..|-+
T Consensus 343 ~d~~l~~L~~d~~~v~rr~~~li~~ 367 (1005)
T KOG1949|consen 343 MDHILVRLETDSRPVSRRLVSLIFN 367 (1005)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHH
Confidence 4555566666666555544444433
No 241
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.35 E-value=9.9 Score=35.75 Aligned_cols=221 Identities=13% Similarity=0.091 Sum_probs=131.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (541)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 241 (541)
.|-..|.++++.+|..|+.+|+.+...-+. ..+...-+..|+..+. +-.|......++.++..|.... .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~---~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPP---DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCH---hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence 355678889999999999999998765542 1122223455555542 1235555666677777777443 2222223
Q ss_pred hchHHHHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCch
Q 009184 242 SPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM 318 (541)
Q Consensus 242 ~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~ 318 (541)
..++..+.+-.. +--...+..+...+..+.....+..+ -...+++..++..+.. .+|.-...+...+..+...-+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 334444433222 22345677788888877765443332 1223677788888854 5777777777777777654431
Q ss_pred hHHHHHhcCchHHHHHhhc--------CCC-ch--hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 319 QTQCVIEYQALPCLLNLLS--------GNY-KK--SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
....+-+...+. .+. ++ -.+..-...|.++...++.... -.+|.|+
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~----------------~~~p~Ll 214 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP----------------FAFPLLL 214 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH----------------HHHHHHH
Confidence 122223333321 111 22 2445555666666655454333 5789999
Q ss_pred HHhhcCchhHHHHHHHHHHHhccC
Q 009184 388 ALLENAEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 388 ~~l~~~~~~v~~~a~~aL~nl~~~ 411 (541)
+-|.++.+.+|..++.+|..++..
T Consensus 215 eKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 215 EKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 242
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.35 E-value=2.8 Score=36.78 Aligned_cols=155 Identities=14% Similarity=0.190 Sum_probs=95.0
Q ss_pred hHHHHHHHHhHhhcCCchh-H----HHHH------hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhh
Q 009184 301 VLIPALRTVGNIVTGDDMQ-T----QCVI------EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~-~----~~~~------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 369 (541)
+|..|+.+|..++...+.. . ..++ ..+.-+.|+..+..+.++++|..|+.++..+..+......+--+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 6778888888887762211 1 1111 112333444444333399999999999999999866544322111
Q ss_pred ----chhhH----HHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHH
Q 009184 370 ----HAFSI----IAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 440 (541)
Q Consensus 370 ----~~~~~----~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 440 (541)
.+|.- ...+=..+...|+..+..+ +..+....+.++..++........+.=.-..++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 13310 0111113455667777665 67888899999999988765444332111234556666777899999
Q ss_pred HHHHHHHHHHHHHhh
Q 009184 441 VTVCLEGLENILKVG 455 (541)
Q Consensus 441 ~~~~l~~L~~l~~~~ 455 (541)
+..++.++..++...
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998887644
No 243
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=0.69 Score=43.38 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=92.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 241 (541)
...+..|.+.+.+....++..+..++...++.....+.. .+..+++-+ ++....+.+.|+.++..+............
T Consensus 91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666667777777776555544443333 456666667 777888999999999888876432222222
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
.+++-.|+.--..++.-|++++-.+|..+...... ..+++.|...+++.++.++..++.+..+...
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 22222222222233455889999999887755332 2467788888999999999888887776653
No 244
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.01 E-value=7.3 Score=39.72 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=110.4
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC----hhhHHHHHHHHhHhhcCCchhH
Q 009184 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQT 320 (541)
Q Consensus 245 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~ 320 (541)
...+...+.+++...+..+...+..++.. ......++....+..|.+++.++. ..+...+++++..+....- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 34566777777777777788888887754 445667888888999999997654 3566666777666654332 11
Q ss_pred HHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184 321 QCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK 399 (541)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 399 (541)
...+...++.....+..-. .+..+-..|+..|-++..++....+ .+.+.--+..|+..+...+..++.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~-----------~v~eev~i~~li~hlq~~n~~i~~ 231 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQ-----------LVAEEVPIETLIRHLQVSNQRIQT 231 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHH-----------HHHhcCcHHHHHHHHHhcchHHHH
Confidence 1111122233333333211 1456777888888888887776666 677778889999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHH
Q 009184 400 EAAWAISNATSGGTHEQIKFLVI 422 (541)
Q Consensus 400 ~a~~aL~nl~~~~~~~~~~~l~~ 422 (541)
.|...+..+...+....+..+.+
T Consensus 232 ~aial~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 232 CAIALLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHHHHHhhCChHHHHHHHH
Confidence 98888888877666555555443
No 245
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.90 E-value=9.7 Score=41.10 Aligned_cols=195 Identities=18% Similarity=0.134 Sum_probs=107.5
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG---- 188 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~---- 188 (541)
.+..+.+++.+.. --..+|++.|..+.......... .+..+..++.+ .++.++..|+.+++.+..
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4666677777644 22233555555554432222222 24555666654 567888889988888862
Q ss_pred CC-----hhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC---Ch
Q 009184 189 DS-----PRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DD 257 (541)
Q Consensus 189 ~~-----~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~---d~ 257 (541)
.. ............++.+...+. ...+..-+..++.+|.|+-. ...++.+...+... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 001111222335666666664 34566778888999999853 34678888887755 57
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh
Q 009184 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL 335 (541)
Q Consensus 258 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 335 (541)
.++..|+|+|..++...++. +.+.+++++.+ .+.++|..|+.+|.. + .+.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~-~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMR--C-NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH--T----H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh--c-CCCH-------HHHHHHHHH
Confidence 78999999999887666543 33566677644 457788888776643 2 2211 234456667
Q ss_pred hcCCCchhHHH
Q 009184 336 LSGNYKKSIKK 346 (541)
Q Consensus 336 L~~~~~~~v~~ 346 (541)
+....+..|..
T Consensus 601 l~~E~~~QV~s 611 (618)
T PF01347_consen 601 LWNEPSNQVAS 611 (618)
T ss_dssp HTT-S-HHHHH
T ss_pred HhhCchHHHHH
Confidence 76654455543
No 246
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.85 E-value=5.4 Score=35.04 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcC-Ch----hHHHHHHh------CCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 009184 133 LQFEAAWALTNIASG-TS----EHTKVVID------HGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (541)
Q Consensus 133 i~~~a~~~L~~l~~~-~~----~~~~~i~~------~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~ 200 (541)
+|..|+.+|..++.. .+ .+...++. .+.-+.|+ -++.++++.+|..|+.++..+-.+...+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777764 11 11122221 12334444 45677899999999999998875543221111110
Q ss_pred C-------------------ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC--hhhhhchHHHHHHhhccCChhH
Q 009184 201 G-------------------GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEV 259 (541)
Q Consensus 201 g-------------------~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~lL~~~d~~v 259 (541)
. .-..|+..|....+..+....+.++..|....|... ......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 0 123445555566788889999999999999875443 3445666777778888899999
Q ss_pred HHHHHHHHHHhccC
Q 009184 260 LTDACWALSYLSDG 273 (541)
Q Consensus 260 ~~~a~~~L~~l~~~ 273 (541)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999888877643
No 247
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.74 E-value=1.8 Score=37.57 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=77.9
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CC
Q 009184 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GN 359 (541)
Q Consensus 285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~ 359 (541)
....++..+|.++++.-+..++..++.++..++.. .+.+ ...+..++..|+.++.+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 56778889999999999999999999988766422 2222 34788899999987677889999999999886 44
Q ss_pred hHHHHHHHhhchhhHHHHHhc---CcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 360 REQIQVIMHVHAFSIIAVIEA---NIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
++..+ .+... ++++.++.+++. ......++.+|..+..
T Consensus 103 p~l~R-----------ei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTR-----------EIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CchHH-----------HHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 44343 33321 345555555543 4666777777777765
No 248
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.50 E-value=1.7 Score=38.50 Aligned_cols=83 Identities=11% Similarity=0.209 Sum_probs=63.0
Q ss_pred CChhHHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhh
Q 009184 147 GTSEHTKVVIDHGAVPIFVKLLYS---------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS 217 (541)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~ 217 (541)
.+..+.+.+++.|++..|+.+|.. .+..+...++.||..|..........+-..+.+..|...| .+++..
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~ 173 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIK 173 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHH
Confidence 345677888888899999988842 4567888899999998877665555555667888888888 788899
Q ss_pred HHHHHHHHHHhhh
Q 009184 218 MLRNATWTLSNFC 230 (541)
Q Consensus 218 ~~~~a~~~L~~l~ 230 (541)
++..++.+|..+|
T Consensus 174 ~r~~~leiL~~lc 186 (187)
T PF06371_consen 174 TRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998887
No 249
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=91.50 E-value=13 Score=35.29 Aligned_cols=203 Identities=11% Similarity=0.093 Sum_probs=137.9
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC-C--Chhhh---hchHHHHHHhhccC-ChhHHHHHHHHH
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P--PFDQV---SPALPALAHLIHSN-DDEVLTDACWAL 267 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~--~~~~~---~~~l~~L~~lL~~~-d~~v~~~a~~~L 267 (541)
..+...|.+..++..+ ..-+-+.+..++.+..++-+..-. . ..... ..++..++.- .. .+++...+-..+
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHH
Confidence 3455677888888888 666777888888888888876521 1 12222 2333444333 12 244444444444
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCc----hHHHHHhhcCCCchh
Q 009184 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA----LPCLLNLLSGNYKKS 343 (541)
Q Consensus 268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~ 343 (541)
..... .+.....+..+.-+......+..+.-++..-|..+...+.+........++.... .++.-.++.+. +.-
T Consensus 150 rEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyv 227 (342)
T KOG1566|consen 150 RECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYV 227 (342)
T ss_pred HHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-cee
Confidence 44333 3334566777778888888888888889999999999888877666555554332 44466778887 899
Q ss_pred HHHHHHHHHHHHhcCC--hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184 344 IKKEACWTVSNITAGN--REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 344 v~~~a~~~L~nl~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 412 (541)
++..+...++.+..+. ..... .++-...-+..+..+|..+...++-+|-....-++...
T Consensus 228 tkrqs~kllg~llldr~N~~~M~----------kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAVMT----------KYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHHHH----------HHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 9999999999988642 22222 04445577888999999999999999998888877654
No 250
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=36 Score=40.43 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=79.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChh
Q 009184 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFD 239 (541)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 239 (541)
+..++..+..+++..+-.+..+++.++..-+.. .. -.+..+.+++.+....++-.+.-...++..+-+.. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 445555666788888888888888887433211 11 11235566677755566666655566666666665 444455
Q ss_pred hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009184 240 QVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (541)
Q Consensus 240 ~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL 294 (541)
.....+..+..+.+.+ ++.|+..++.++..+.+.........++ ..+..+..+|
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lL 1009 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLL 1009 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHc
Confidence 5566777777777654 5689999999999988654433332232 2334444444
No 251
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.32 E-value=0.97 Score=40.12 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHH---------------hcCChHHHHHhhcC-----CChhhHHHHHHHHHHhh
Q 009184 170 SPSDDVREQAVWALGNIAGDSPRCRDLVL---------------SQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNF 229 (541)
Q Consensus 170 ~~~~~v~~~a~~~L~nl~~~~~~~r~~i~---------------~~g~i~~Ll~~l~~-----~~~~~~~~~a~~~L~~l 229 (541)
.+.......++..|+|++.....++..+- +...+..|+..+.+ .....-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34455677788889999876664443321 12246667776644 22355678889999999
Q ss_pred hcCCCCCChhhh--hc--hHHHHHHhhccCChhHHHHHHHHHHHhccCChHH
Q 009184 230 CRGKPQPPFDQV--SP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (541)
Q Consensus 230 ~~~~~~~~~~~~--~~--~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~ 277 (541)
++....+.+... .. .+..|+.++.+.+..-+.-++.+|.|+|-..+..
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 988644443332 22 3777888888887777888899999998655543
No 252
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.31 E-value=2.5 Score=37.57 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=74.1
Q ss_pred hCCCChhhHHHHHHHHhHhhcCCchhHHHHH----------------hcCchHHHHHhhcCCC-----chhHHHHHHHHH
Q 009184 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSGNY-----KKSIKKEACWTV 352 (541)
Q Consensus 294 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L 352 (541)
+.+++......++..|+|++...... ..++ ....+..|+.++..+. ...-....+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 34455567778888889988744322 2222 2235677777776611 234456778899
Q ss_pred HHHhcCChHHHHHHHhhchhhHHHHHhc--Cc--HHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 009184 353 SNITAGNREQIQVIMHVHAFSIIAVIEA--NI--IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 422 (541)
Q Consensus 353 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~--~~--l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 422 (541)
+|++.. ++..+ .+++. +. +..|+..+++.+..-|.-++.+|.|++-. .+.-.+|..
T Consensus 83 ~NlS~~-~~gR~-----------~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~ 142 (192)
T PF04063_consen 83 ANLSQL-PEGRQ-----------FFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS 142 (192)
T ss_pred HHhcCC-HHHHH-----------HHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence 999874 66666 66643 34 77888888888666677799999999884 333345443
No 253
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.27 E-value=1.7 Score=37.40 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=79.3
Q ss_pred CcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHH
Q 009184 285 GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (541)
Q Consensus 285 g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (541)
.+++.|..+|+.+ ++.+|.+++++||.|.+-++...+.+... .+.-. -... ........... .+......
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~-~~~~~~~~l~~-~~~~~~~e--- 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENS-NDESTDISLPM-MGISPSSE--- 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccc-cccchhhHHhh-ccCCCchH---
Confidence 5677888888664 68999999999999998777554322211 00000 0000 11111111111 11111111
Q ss_pred HHHHhhchhhHHHHHhcCcHHHHHHHhhcCc-hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHH
Q 009184 364 QVIMHVHAFSIIAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 442 (541)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~ 442 (541)
...-.-++..|+++|.++. ..-...++.++.++...-......++- .+++.++..+...++..++
T Consensus 81 ------------e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e 146 (160)
T PF11865_consen 81 ------------EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLRE 146 (160)
T ss_pred ------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHH
Confidence 2222246677888777653 233345666666665322222233332 3788888888876667787
Q ss_pred HHHHHHHHHHH
Q 009184 443 VCLEGLENILK 453 (541)
Q Consensus 443 ~~l~~L~~l~~ 453 (541)
..+.-|..|+.
T Consensus 147 ~~~~qL~~lv~ 157 (160)
T PF11865_consen 147 FYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 254
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=91.24 E-value=27 Score=42.13 Aligned_cols=263 Identities=13% Similarity=0.069 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHHHHHHHccC--CCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184 85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (541)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (541)
.+..+...|+..|++++... ..+....-.+..++..|..++.+..+.+++...+.|+.++.....+ -+..| =+
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-Wk 1223 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-WK 1223 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-cH
Confidence 45678888999888876532 1111112234557888888887666689999999999998763222 22233 33
Q ss_pred HHHHhh----CCCCHHHHHHHHHHHHHhhCCChh-h----HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh----
Q 009184 163 IFVKLL----YSPSDDVREQAVWALGNIAGDSPR-C----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF---- 229 (541)
Q Consensus 163 ~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~-~----r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l---- 229 (541)
.+..++ ..+++.+.+.|..++..|+.+.-. . .+.+.+ .+..+........+.++--.++..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 344444 346788899999988888644211 0 011111 3444444443333344444444444433
Q ss_pred hcCCC-----------------------C------CCh---hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC----
Q 009184 230 CRGKP-----------------------Q------PPF---DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---- 273 (541)
Q Consensus 230 ~~~~~-----------------------~------~~~---~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---- 273 (541)
+.+.. . ... ...-.++..|..+......+|+..|+.+|..+...
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 11100 0 000 11122333344445567889999999999777532
Q ss_pred -ChHHHHHHHHhCcHHHHHHhhCCC-------------------C-----h--hhHHHHHHHHhHhhcCCchhHHHHHhc
Q 009184 274 -TNDKIQAVIEAGVFPRLAEFLMHP-------------------S-----P--SVLIPALRTVGNIVTGDDMQTQCVIEY 326 (541)
Q Consensus 274 -~~~~~~~~~~~g~l~~L~~lL~~~-------------------~-----~--~v~~~al~~L~nl~~~~~~~~~~~~~~ 326 (541)
+++.-..+.. +++-.+...++.. + | .....|++.+..+....-.....++ .
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~ 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-K 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 2223333333 4555554444210 0 1 1223344444444332222222222 3
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
+++..|..++... +..+-..++.+|.++..
T Consensus 1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 5566666666777 78888888888888876
No 255
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.16 E-value=21 Score=37.00 Aligned_cols=104 Identities=25% Similarity=0.333 Sum_probs=76.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC--hhH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEH 151 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~--~~~ 151 (541)
.+.-++.++.++|..+++.+++.|+.+... ...+++.+-.|++..|.+-+-+.. +.++.+|+.+|+.+-..+ +++
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChHH
Confidence 455667777889999999999999988643 667888888888888887776666 899999999999886533 333
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 009184 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS 190 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~ 190 (541)
+ ....|..+++. |+.++|..| +.||..+.
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 2 23456666665 788898865 55665444
No 256
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.97 E-value=1 Score=34.64 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=58.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
.+...++.|.++.+.+|-.|+..|++++... .... .--.+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~~~~--~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-SEPV--IDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-Ccch--hhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence 4677888889999999999999999999764 3111 112567888899999998 89999999999999986554
No 257
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=89.96 E-value=22 Score=35.46 Aligned_cols=267 Identities=13% Similarity=0.066 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhc---CChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHH
Q 009184 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (541)
Q Consensus 172 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~---g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 247 (541)
+..+..+|+.+|+.+..+.. ....+-.. -++...+..+. ...+..+....+|+|+.=-.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 67899999999999875543 22222111 12344444442 344567778888887753222111122222333333
Q ss_pred HHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCCCChhhHHHHHHHHhHhhc--CCc-hhH--
Q 009184 248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVT--GDD-MQT-- 320 (541)
Q Consensus 248 L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~--~~~-~~~-- 320 (541)
+..+-. -+...+....+.++..+....+... .... ..++.++..+-+....++..|..++..+.. +.. ...
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 333332 3566788889999988887665432 2222 367777777767666777776655544432 111 111
Q ss_pred -HHHHh----cC-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184 321 -QCVIE----YQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL 390 (541)
Q Consensus 321 -~~~~~----~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l 390 (541)
....+ .+ +.+.|..++... +.....--+|...-..-+++. .. .| .. -...+...-..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~-~~---~w------~~-~n~wL~v~e~cF 283 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSR-LD---SW------EH-LNEWLKVPEKCF 283 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCch-hh---cc------Hh-HhHHHHHHHHHh
Confidence 11111 12 233356666663 222222223333222222221 11 00 11 113444444556
Q ss_pred hcCchhHHHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHhhhcCCC-Ch----HHHHHHHHHHHHHHHh
Q 009184 391 ENAEFDIKKEAAWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCP-DP----RIVTVCLEGLENILKV 454 (541)
Q Consensus 391 ~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~-~~----~~~~~~l~~L~~l~~~ 454 (541)
.++++.+|..|..+-..++... +.........- +..+|...++.. .. ++...++..+.+++-+
T Consensus 284 n~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 284 NSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 7789999999988887776422 11111111111 234555555442 22 5677777777777743
No 258
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.95 E-value=23 Score=35.66 Aligned_cols=193 Identities=19% Similarity=0.247 Sum_probs=119.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHhhc------CCChhhHHHHHHHHHHhhhcC
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLLAQLN------GQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~r~~i~~~g~i~~Ll~~l~------~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..+..++...+.+-+-.++.....++..+. ..+..+.+.-+++-+-+++. .+++.-.+..++.+|.-+|+.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 335566666777777788888888875442 24445666545555555552 233445567778888899998
Q ss_pred CCCCChhhhhchHHHHHHhhccC-Chh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChh-hHHH
Q 009184 233 KPQPPFDQVSPALPALAHLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIP 304 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~-d~~------v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~-v~~~ 304 (541)
........+-.-+|.|...+... |++ +..++..+|..++..... .+.++..|.++.+.++-.-++.. -..-
T Consensus 94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 76555556677889998888643 333 688888999888877554 45688889999998775433322 2223
Q ss_pred HHHHHhHhhcCCc---hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009184 305 ALRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (541)
Q Consensus 305 al~~L~nl~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (541)
++.++--.+.+.+ +....+.. ++..+..-+... +...+.+.|..|+.+...
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhC
Confidence 3333333333221 11112211 244444445555 677889999999977663
No 259
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.78 E-value=32 Score=37.02 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=167.8
Q ss_pred CHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHH--hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 74 ~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
....+++.++.. |.-++..+++.++-++.+- +-..+.+. -..+...+.+++..-..-+.+...+..|+.+.....+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 345666777764 6778889999998877543 22222221 1334445555555432235566666666666553333
Q ss_pred HHHHHHhCCChHHHHHhh------CCCCHHHHHHHHHHHHHhhC---C-ChhhHHHHHhcCChHHHHHhhcCC---Chhh
Q 009184 151 HTKVVIDHGAVPIFVKLL------YSPSDDVREQAVWALGNIAG---D-SPRCRDLVLSQGGLVPLLAQLNGQ---PKLS 217 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL------~~~~~~v~~~a~~~L~nl~~---~-~~~~r~~i~~~g~i~~Ll~~l~~~---~~~~ 217 (541)
.... ....+++++ ..+.+-++.+.+.+|.|+.. . +..+.. ++-+++.+-.+. +..-
T Consensus 606 ~I~P-----~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~ 674 (978)
T KOG1993|consen 606 HIAP-----YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVY 674 (978)
T ss_pred hhhH-----HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceee
Confidence 3211 112222222 22556778888888888862 2 221111 223333333222 2233
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009184 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (541)
Q Consensus 218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L-~~l~~~~~~~~~~~~~~g~l~~L~~lL~~ 296 (541)
+.+.+.........+.+... ...-+++|.++..+....+ ....++..+ +++.-.+....+ ....|++..+..++.+
T Consensus 675 L~EDgmeLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 675 LLEDGMELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTE-NLPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDD 751 (978)
T ss_pred hhhhHHHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHH
Confidence 44555544444444433222 2345677888777764433 334444444 333333333222 3344888899999877
Q ss_pred CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHH
Q 009184 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375 (541)
Q Consensus 297 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~ 375 (541)
-..+-....++++..+...++ ........++++.+..-+- ....|.+...-..+++.+.-.+++..-
T Consensus 752 vr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~m----------- 819 (978)
T KOG1993|consen 752 VRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFM----------- 819 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHH-----------
Confidence 666667777888877776554 3334456778888766553 332567777777777777776666554
Q ss_pred HHHh-cC--------cHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHH
Q 009184 376 AVIE-AN--------IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHE 415 (541)
Q Consensus 376 ~l~~-~~--------~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~ 415 (541)
.+++ .. ++..-+.+... .+++-|+--+-|+..+...+++.
T Consensus 820 svlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ 869 (978)
T KOG1993|consen 820 SVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD 869 (978)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence 3331 11 12222222222 35666666666666666654443
No 260
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=89.70 E-value=18 Score=33.99 Aligned_cols=214 Identities=18% Similarity=0.132 Sum_probs=120.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHccCC--CCc-HHHHH-----------hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 009184 79 VAGVWSNDSGVQYECTTQFRKLLSIER--SPP-IEEVI-----------RSGVVPRFVEFLLREDYPQLQFEAAWALTNI 144 (541)
Q Consensus 79 ~~~L~s~~~~~~~~a~~~l~~l~~~~~--~~~-~~~~i-----------~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l 144 (541)
+.+|.+..+..-..|+..+.++++.-+ .+. .+.+. -.|+.+.+++-+.++. ....++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 456777777777778888877776421 111 11111 0233333334444433 445555666665
Q ss_pred hcC-------ChhHHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC
Q 009184 145 ASG-------TSEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ 213 (541)
Q Consensus 145 ~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~ 213 (541)
+.- ..+.+-.+.-.+.+|.++..+..++ ......++..|+.+|.... ...+..++....+.
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 542 1222322222356788888887766 1344456688888873322 12344444444332
Q ss_pred C---hhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009184 214 P---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (541)
Q Consensus 214 ~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L 290 (541)
. ..+....++..|..-.. | ......+..+..+|.+.-+.++..++..|..+....+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 2 33444444444443221 2 12355677888999888889999999999888765443222 445788899
Q ss_pred HHhhCCCChhhHHHHHHHHhHhhc
Q 009184 291 AEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 291 ~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
.+++.++. ...|+.+|-++.+
T Consensus 234 lrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 234 LRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHHhCCcc---HHHHHHHHHHHHh
Confidence 99997766 4456666555543
No 261
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.26 E-value=6 Score=37.45 Aligned_cols=146 Identities=19% Similarity=0.184 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--C
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--G 202 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~ 202 (541)
++.+.-++..+.-++. .+.....+...+ ....+..++. +..+..+-.++++++|+..... .+..+.... .
T Consensus 77 ~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~ 154 (268)
T PF08324_consen 77 PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSS 154 (268)
T ss_dssp CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTC
T ss_pred CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccch
Confidence 3556666666655555 444444443322 2333333332 2567888899999999987766 566665442 2
Q ss_pred hHHHHHhhcCCC---hhhHHHHHHHHHHhhhcCC--CCCChhhhhchHHHHHHhhc--cCChhHHHHHHHHHHHhccCCh
Q 009184 203 LVPLLAQLNGQP---KLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH--SNDDEVLTDACWALSYLSDGTN 275 (541)
Q Consensus 203 i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~ 275 (541)
+...+..+.... +..++..++.++.|++-.. ..........++..+...+. ..|+++...++-+++++...++
T Consensus 155 i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 155 ILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 333333332332 7888889999999987543 11122233445666666433 2689999999999999996665
Q ss_pred HHH
Q 009184 276 DKI 278 (541)
Q Consensus 276 ~~~ 278 (541)
...
T Consensus 235 ~~~ 237 (268)
T PF08324_consen 235 SAK 237 (268)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 262
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.91 E-value=28 Score=35.22 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=80.8
Q ss_pred HHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCCh
Q 009184 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSP 299 (541)
Q Consensus 221 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~ 299 (541)
.-...++.+...............+..+..-..+++..++..|+++|.+.+...++....... -.+..++.-| +..+.
T Consensus 236 td~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~ 314 (533)
T KOG2032|consen 236 TDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNE 314 (533)
T ss_pred HHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCcc
Confidence 333444445444322222233444444444455677789999999999999885554332222 3445555444 44568
Q ss_pred hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 300 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
+|...++.+|..+...-....-...--.+.-.+..+..+. +++.|..|...++.++.
T Consensus 315 ~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 315 EVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHH
Confidence 8999999888877642211100000112344566777777 89999999999888876
No 263
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.84 E-value=2.2 Score=32.73 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=57.7
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 408 (541)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 408 (541)
+...+..+.++ .+.+|..+...|..+..... .. ..--.+++..+...++++|+-|--.|+.+|+.+
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~-----------~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~L 70 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EP-----------VIDIPKILDLFLSQLKDEDSYVYLNAIKGLAAL 70 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cc-----------hhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 45566777777 78899999999999998544 11 122346788888999999999999999999999
Q ss_pred ccCCCHHHHHH
Q 009184 409 TSGGTHEQIKF 419 (541)
Q Consensus 409 ~~~~~~~~~~~ 419 (541)
+..........
T Consensus 71 a~~~p~~vl~~ 81 (92)
T PF10363_consen 71 ADRHPDEVLPI 81 (92)
T ss_pred HHHChHHHHHH
Confidence 87543333333
No 264
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=88.84 E-value=27 Score=34.81 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=87.0
Q ss_pred HHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhc----CC-CchhHHHHHHHHHHH
Q 009184 281 VIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS----GN-YKKSIKKEACWTVSN 354 (541)
Q Consensus 281 ~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~-~~~~v~~~a~~~L~n 354 (541)
+.+..-.+.+-.-+.. +...-+..|+..+..++.........++ ...+..++. ++ .+..-+..|+..++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 3444444555445543 3355678888888888865444333332 123333333 22 266788899999999
Q ss_pred HhcCChHHHHHHHh-hchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184 355 ITAGNREQIQVIMH-VHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 433 (541)
Q Consensus 355 l~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 433 (541)
++........-+.+ +..++...+....++|.|. --.+..+-++..|++.+..+-..-++++.. ++++.++.+|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-----~~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-----QIFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-----HHHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHh
Confidence 98743210000000 1122233677777888776 222346788999999999987765554433 3788999999
Q ss_pred CCCChHHHHHHHHH
Q 009184 434 VCPDPRIVTVCLEG 447 (541)
Q Consensus 434 ~~~~~~~~~~~l~~ 447 (541)
.+++.-+..-|..+
T Consensus 356 ~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 356 QSSSYVVHTYAAIA 369 (370)
T ss_dssp TSS-HHHHHHHHHH
T ss_pred CCCCcchhhhhhhh
Confidence 98876665554433
No 265
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.01 E-value=35 Score=35.13 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=107.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC---hhhHHHHHHHHHHhhhcCCCCCCh
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPF 238 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~ 238 (541)
..+...+.+++..-+..++..|..++.+.. +...++...++..|..++.+.. ...+....+.+++.+....-....
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 455667777776666668888888877766 5555566667888888885433 456777777788777766431111
Q ss_pred hhhhchHHHHHHhh--ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184 239 DQVSPALPALAHLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (541)
Q Consensus 239 ~~~~~~l~~L~~lL--~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 316 (541)
.....++-....+. ...+..+...|+..|-.+.-+++...+.+.+.--+..|+..++..+..+...|+..+..+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 12223333333333 2335667888888888888777777777788788999999999999889888888887776655
Q ss_pred c
Q 009184 317 D 317 (541)
Q Consensus 317 ~ 317 (541)
+
T Consensus 245 ~ 245 (713)
T KOG2999|consen 245 P 245 (713)
T ss_pred C
Confidence 4
No 266
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.62 E-value=24 Score=38.86 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh
Q 009184 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI 252 (541)
Q Consensus 173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL 252 (541)
+.++.++..+|+++|-..... ....+|.+++-|..++...++.+..-+++-+|... .......+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 678889999999999544432 22258899999988888888888888888887653 124467789999999
Q ss_pred ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 253 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
..+++-|+..++..|++|....--. ....++-+++..|-+.+++++.-|=.+++.+..
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987543211 111233344444455666777777777766653
No 267
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.33 E-value=37 Score=34.67 Aligned_cols=260 Identities=11% Similarity=0.097 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHH
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVP 205 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~i~~ 205 (541)
+-+.....+++.-+-.+-......+++. ++..+....++ .++..-.....+++.+.+ ..+.... -++...+++
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~-~~E~~L~P~ 121 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVS-QFEEALFPP 121 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHH-HHHHHHHHH
Confidence 4455545555444444333333333321 23333333444 455555555555555542 2221111 234446777
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhcCCC-CCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 009184 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (541)
Q Consensus 206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 283 (541)
+..+| ...-.+..-.+...++.|.+..+ .........++|.|+.- +-.....+ -...+.|.......+.. +..
T Consensus 122 f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~---i~~ 196 (435)
T PF03378_consen 122 FQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSF---IVA 196 (435)
T ss_dssp HHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchh---hcc
Confidence 77777 44445666666677776665544 22223445555554432 21111111 22222333222221111 111
Q ss_pred h----CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-
Q 009184 284 A----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA- 357 (541)
Q Consensus 284 ~----g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~- 357 (541)
. +++..+-+++.+.. .-..+...|..+...-+.. .+..+ ..++..++.-|++....+..+.-+..++.++.
T Consensus 197 ~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~ 273 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIK 273 (435)
T ss_dssp -S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 1 33444445665543 2245667777776655432 11222 23555666666655356666666666666654
Q ss_pred CChHHHHHHHhhchhhHHHHH---hcCcHHHHHHHh-----hc-CchhHHHHHHHHHHHhccC
Q 009184 358 GNREQIQVIMHVHAFSIIAVI---EANIIGPLVALL-----EN-AEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~---~~~~l~~L~~~l-----~~-~~~~v~~~a~~aL~nl~~~ 411 (541)
.+++..- ..+ +.|++..++.-+ .. ..+.-|+-++-+++++...
T Consensus 274 ~g~~~li-----------~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 274 YGPDFLI-----------QTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp H-HHHHH-----------HHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHH-----------HHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 3343332 222 345555555421 11 1234466677777776643
No 268
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=87.29 E-value=41 Score=35.23 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
+.++.+....+..+...+. .-|.+.+...+++..+..-+.+. |+.+..++.||+.++.
T Consensus 204 ~~~~SLi~ATLesllrfl~---wiPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 204 SRDESLIEATLESLLRFLE---WIPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD 261 (1053)
T ss_pred cCChHHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 5677777777777777663 56678888888888887766553 5777888888888876
No 269
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.26 E-value=16 Score=39.66 Aligned_cols=322 Identities=16% Similarity=0.114 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH------hC
Q 009184 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI------DH 158 (541)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~------~~ 158 (541)
+|..+...+++.|+.++.. +.....++..|++..|+.. +.....-.-...||..|.+ .......+. -.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 3444566778888877754 5566677777777666554 3312333444456666665 222222221 12
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC-------C-----------ChhhHHH
Q 009184 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------Q-----------PKLSMLR 220 (541)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~-------~-----------~~~~~~~ 220 (541)
.++..-+.+|......-+.++...++-...... .-+.+-.+..+..|+.++.. + .+..+..
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~fra-il~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAFVFRA-ILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 334445556655443333333333222111000 11222234456666666521 1 1223344
Q ss_pred HHHHHHHhhhcCCC-----C-CChhhhhchHHHHHHhhccC------ChhHHHHHHHHHHHhccCCh-------HHHHHH
Q 009184 221 NATWTLSNFCRGKP-----Q-PPFDQVSPALPALAHLIHSN------DDEVLTDACWALSYLSDGTN-------DKIQAV 281 (541)
Q Consensus 221 ~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~-------~~~~~~ 281 (541)
..|.+|....+..- . .......+..+..++-+... ..+..+..+|-+-.+....+ .....+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 45555543332210 0 00011112222222222211 12334555555544433322 122346
Q ss_pred HHhCcHHHHHHhhCCC-C-------hhhHHHHHHHHhHhhcCCchhHHHHH----h---cCchHHHHHhhcCC---Cchh
Q 009184 282 IEAGVFPRLAEFLMHP-S-------PSVLIPALRTVGNIVTGDDMQTQCVI----E---YQALPCLLNLLSGN---YKKS 343 (541)
Q Consensus 282 ~~~g~l~~L~~lL~~~-~-------~~v~~~al~~L~nl~~~~~~~~~~~~----~---~~~l~~L~~lL~~~---~~~~ 343 (541)
.+.+.+..++.+...+ + .+....|+.+|.-+..-.+-+.+..- . ..++..++..-... .+++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpe 677 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPE 677 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHH
Confidence 6677778887776442 2 24566777777766655554432211 1 11333333332211 1789
Q ss_pred HHHHHHHHHHHHhcCChHH----HHHHHhhch----h----------------hHHHHHhcCcHHHHHHHhhcCc-----
Q 009184 344 IKKEACWTVSNITAGNREQ----IQVIMHVHA----F----------------SIIAVIEANIIGPLVALLENAE----- 394 (541)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~----~~~~~~~~~----~----------------~~~~l~~~~~l~~L~~~l~~~~----- 394 (541)
++..|+.+|.|+....+.. +..+-..+. | .|-.+-..+.+..|+.+|+...
T Consensus 678 i~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~a 757 (1516)
T KOG1832|consen 678 IIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTA 757 (1516)
T ss_pred HHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcH
Confidence 9999999999998754332 211111110 0 2223345688999999998743
Q ss_pred hhHHHHHHHHHHHhccCCC
Q 009184 395 FDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 395 ~~v~~~a~~aL~nl~~~~~ 413 (541)
..+|.-|+.+|.-|+...+
T Consensus 758 D~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 758 DCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHHHHhccccCcH
Confidence 4689999999999988543
No 270
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.05 E-value=29 Score=35.39 Aligned_cols=229 Identities=10% Similarity=0.030 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC----CCCChhhhhchHH
Q 009184 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP 246 (541)
Q Consensus 171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~l~ 246 (541)
+++.+-....+.+.-+-..-......++.. .+..+....++..++..-.....+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 456666666666655544444444444443 33333333344556776666666666665543 2222345577889
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChh---hHHHHHHHHhHhhcCCchhHHHH
Q 009184 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS---VLIPALRTVGNIVTGDDMQTQCV 323 (541)
Q Consensus 247 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~---v~~~al~~L~nl~~~~~~~~~~~ 323 (541)
.+...|+.+=.+...++...++.+.+.... ..+- .-....+-.++...-|+ -.-+..+.|..+....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~p-~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i--- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPLP-DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI--- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCc-HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence 999999888788889998888888754441 0011 11222222223222121 22445556666655443322
Q ss_pred HhcC----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh-HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhH
Q 009184 324 IEYQ----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDI 397 (541)
Q Consensus 324 ~~~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v 397 (541)
...+ ++...-+++.+. . .-..+...|..+...-+ +..+ ..+. .++..++.-|++. ..+.
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~-----------~yl~-~I~~lll~RLq~skT~kf 259 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALE-----------PYLK-QIFTLLLTRLQSSKTEKF 259 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHG-----------GGHH-HHHHHHHHHHHHC--HHH
T ss_pred cchhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHH-----------HHHH-HHHHHHHHHHhhCCcHHH
Confidence 2222 333444566655 2 22567778887776433 3333 2222 3555666666543 4556
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHH
Q 009184 398 KKEAAWAISNATSGGTHEQIKFLV 421 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~~~~~~~~l~ 421 (541)
.+.-+..++.++....++.....+
T Consensus 260 ~~~fv~F~~~~~~~~g~~~li~~i 283 (435)
T PF03378_consen 260 VKRFVVFLSLFAIKYGPDFLIQTI 283 (435)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHH
Confidence 666555556554433344433333
No 271
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=87.05 E-value=7.4 Score=47.57 Aligned_cols=265 Identities=15% Similarity=0.187 Sum_probs=139.8
Q ss_pred CCCHHHHHHHHHHHHHHHccCCC-----CcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC
Q 009184 84 SNDSGVQYECTTQFRKLLSIERS-----PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~ 158 (541)
..+++.+..+...++.++..... +..-.. -..++..+..+-....++.++......+. ..........
T Consensus 492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~-v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~ 564 (2341)
T KOG0891|consen 492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQV-VKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQP 564 (2341)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHH-HHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCc
Confidence 45677777776666655543211 000000 11123333333222222555554443333 1122223344
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhhcCCCC
Q 009184 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQ 235 (541)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~ 235 (541)
+.+..+...+..+.-.+++.+...+++++..+|.+.-.-+.. ..+..+. .+.-.-+......-+..+....+.
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~----~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK----TLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH----HHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 556666777777888899999999999998776322221111 1111111 111111111111111111111111
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhc
Q 009184 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~ 314 (541)
.....+...+..++..+...+..+...+..++..|+..........++ ..++.+.+.+.. .+..-+..++++++++.+
T Consensus 641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 112233455566777777788888888889999988655533443444 556666666543 455678889999999987
Q ss_pred CCchhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184 315 GDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 315 ~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (541)
........... ..++..+...+.......++.++...++++....+
T Consensus 720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 65443322222 24566666666666567788888888887766433
No 272
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.16 E-value=9 Score=34.35 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-----CChhhHHHHHHHHhHhhcCCch-hHHHHHhcCchHHHH
Q 009184 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDM-QTQCVIEYQALPCLL 333 (541)
Q Consensus 260 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~ 333 (541)
...++..|.-++..+. ....++++.+--.+..+|.. ..+.+|..++..+|.++.+.+. ....+....++|.++
T Consensus 117 vcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3444545555555444 44556777665556666633 2356888999999999987664 445666789999999
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh-hchhhHHHHHhcCcHHHHHHH-hhcCchhHHHHHHHHHHHhcc
Q 009184 334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH-VHAFSIIAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 334 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~ 410 (541)
+++..+ +.--+--|++++.-+... ....+|+-+ .+-| +-+. .++..++.. .+.+..++-+.++.+-..++.
T Consensus 196 rIme~g-SElSktvaifI~qkil~d-DvGLqYiCqT~eRF---yAv~-~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 196 RIMELG-SELSKTVAIFIFQKILGD-DVGLQYICQTFERF---YAVN-LVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHhh-hHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 999998 776777777777777653 333432111 1111 1111 122223222 333566777777777777665
No 273
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=85.85 E-value=30 Score=32.16 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=71.5
Q ss_pred HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCh
Q 009184 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 282 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~ 360 (541)
.+...++.++.+++.++. ..-..+|-.++..-...-..+-.|-++.|..++.++. +.-+|..|+.+|..++...+
T Consensus 70 re~~A~~~li~l~~~~~~----~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDD----FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhhHHHHHHHHcCCcc----hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 334678899999976653 2223333333322222222334566777888887764 56789999999999998666
Q ss_pred HHHHHHHhhchhhHHHHHhcCcHHHHHHH-hhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHh
Q 009184 361 EQIQVIMHVHAFSIIAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 430 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~ 430 (541)
.... .+++ .+..++.. +...+..+-..-+..++.+-...-...++.+.+.|+++..+
T Consensus 146 ~~Re-----------~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 146 ISRE-----------EVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred CCHH-----------HHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 5555 3333 34444444 33333332333333333332221234455556677776533
No 274
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.60 E-value=2.4 Score=38.45 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHhc-------CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH-HhCC
Q 009184 88 GVQYECTTQFRKLLSIERSPPIEEVIRS-------GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV-IDHG 159 (541)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~-------g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i-~~~g 159 (541)
.-|..|+.+++|+.-.+ .+++.++.. .++..|+++|....++-.++-|+-.|.+++.++......+ .+.+
T Consensus 139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 45788999999987553 333333322 3566778888877668999999999999999876665444 4678
Q ss_pred ChHHHHHhhCCCC
Q 009184 160 AVPIFVKLLYSPS 172 (541)
Q Consensus 160 ~i~~L~~lL~~~~ 172 (541)
.|..|+.+++...
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999996643
No 275
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.41 E-value=20 Score=38.90 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=106.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.+..++..|.|.+......+-..+...+..++.+ + ++..|+++--+..+ ..|+.+|..+-. |..+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K~ 70 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDKH 70 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHHH
Confidence 6788999999999988888888888877654222 2 36667766443331 345556665432 32222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
++..|-..+.. +.-|-.++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|..|.=.-
T Consensus 71 ------~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 71 ------LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred ------HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 23444455543 4567889999999998887777888888899999999988888888888888888776554
Q ss_pred CCCChhhhhchHHHHHHhh
Q 009184 234 PQPPFDQVSPALPALAHLI 252 (541)
Q Consensus 234 ~~~~~~~~~~~l~~L~~lL 252 (541)
|..-......++.....++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4333333344444444444
No 276
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.35 E-value=4.4 Score=36.24 Aligned_cols=138 Identities=8% Similarity=0.110 Sum_probs=87.2
Q ss_pred hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC----CchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHH
Q 009184 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSII 375 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~ 375 (541)
-...|+..|.-+++. ++....++++.+--.+...|... ....+|..+..+++.+.. ++++.+.
T Consensus 116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~----------- 183 (315)
T COG5209 116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIK----------- 183 (315)
T ss_pred HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHH-----------
Confidence 345566666666654 44444566665544555555432 145688899999999998 6777777
Q ss_pred HHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc--------CChHHHhh-hcCCCChHHHHHHHH
Q 009184 376 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPLCD-LLVCPDPRIVTVCLE 446 (541)
Q Consensus 376 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~~L~~-lL~~~~~~~~~~~l~ 446 (541)
.+....++|.++++++.++.--+.-|+..+..+... ....+++++. .++..++. +.+.....+...++.
T Consensus 184 fLltTeivPLcLrIme~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iR 261 (315)
T COG5209 184 FLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIR 261 (315)
T ss_pred HHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 788889999999999998877788888888888763 3444444431 22333322 223344555666555
Q ss_pred HHHHHH
Q 009184 447 GLENIL 452 (541)
Q Consensus 447 ~L~~l~ 452 (541)
+.-.+.
T Consensus 262 cYlRLs 267 (315)
T COG5209 262 CYLRLS 267 (315)
T ss_pred Hheeec
Confidence 544443
No 277
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=85.32 E-value=6.2 Score=32.04 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=53.1
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc-CChHHHhhhcCCCCh--------HHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDP--------RIVTVCLEGLENIL 452 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~--------~~~~~~l~~L~~l~ 452 (541)
++..|..-|...++.|+..++.+|-.++..|.+.....+.+. ..|+.+..+-..+|+ .|+..|-+++..|+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 667888888888999999999999999999988887777653 456666655543333 46666666666655
Q ss_pred H
Q 009184 453 K 453 (541)
Q Consensus 453 ~ 453 (541)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 3
No 278
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.01 E-value=3.1 Score=34.97 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=59.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
+.+..+.+.|+++++.++..|+..|-.+...-..+...++.+.+++..|+.+++...++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 57788888899999999999999998887653234455677888999999999854458899999988888775
No 279
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=84.99 E-value=7.4 Score=30.18 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=56.0
Q ss_pred HcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 009184 422 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 501 (541)
Q Consensus 422 ~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il 501 (541)
....+..|+.-++.+++.....++..+..+++.... ...+.+.|+.+-+.++...-+++.+.....|+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 446677888888888777888889999888765422 55777899999999999999999998888887
Q ss_pred HH
Q 009184 502 ET 503 (541)
Q Consensus 502 ~~ 503 (541)
+.
T Consensus 96 ~~ 97 (98)
T PF14726_consen 96 DQ 97 (98)
T ss_pred hc
Confidence 64
No 280
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.57 E-value=20 Score=31.07 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=70.1
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC--CChHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYS-PSDDVREQAVWALGNIA---GDS 190 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~~ 190 (541)
.+..+..+|++++ +.-+-.++..+...+..++ .+.+.+. ..+..++.+|+. +.+.+.+.++.++..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667788888887 7888878777777766431 2333332 356788888887 55778888888888886 444
Q ss_pred hhhHHHHHhc---CChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184 191 PRCRDLVLSQ---GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (541)
Q Consensus 191 ~~~r~~i~~~---g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~ 234 (541)
++....+... +++..++.++.+ ......++.+|..+....|
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHP 146 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCC
Confidence 5433333222 234444444421 5566677777777766543
No 281
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.45 E-value=37 Score=32.04 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=104.0
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcC--chHHHHHhhcCC---CchhHHHHHHHHHHHHhcCChHH
Q 009184 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN---YKKSIKKEACWTVSNITAGNREQ 362 (541)
Q Consensus 288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~--~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~ 362 (541)
..+..++..=..+.+-+++-.+.-++...+.. ..+...+ +...+..++... ..+..+.-++.+++|+..+...
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~- 143 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPAS-DLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG- 143 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHH-HHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHH-HHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-
Confidence 44445554434456778888876666544332 2222211 244444444332 2667888899999999985333
Q ss_pred HHHHHhhchhhHHHHH-hcC--cHHHHHHHhhcC---chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc-CC
Q 009184 363 IQVIMHVHAFSIIAVI-EAN--IIGPLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VC 435 (541)
Q Consensus 363 ~~~~~~~~~~~~~~l~-~~~--~l~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~ 435 (541)
.+ .+. ..+ ++..+.....+. +..++..++..+.|++..........=....++..+...+ ..
T Consensus 144 ~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~ 212 (268)
T PF08324_consen 144 RQ-----------LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE 212 (268)
T ss_dssp HH-----------HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC
T ss_pred HH-----------HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc
Confidence 33 333 222 233333333332 6889999999999997521000000000111345555533 22
Q ss_pred -CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh-cCCCHHHHHHHHHH
Q 009184 436 -PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKL 500 (541)
Q Consensus 436 -~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~i~~~a~~i 500 (541)
.|++....++-+|++++..+... .......|....+.... ....+.+.+.+.+|
T Consensus 213 ~~d~Ea~~R~LvAlGtL~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 213 ESDEEALYRLLVALGTLLSSSDSA-----------KQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HTSHHHHHHHHHHHHHHHCCSHHH-----------HHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccChhH-----------HHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 68899999999999999555442 33344455555655553 56777777776654
No 282
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.14 E-value=91 Score=36.32 Aligned_cols=73 Identities=11% Similarity=0.186 Sum_probs=55.6
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHH
Q 009184 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI 405 (541)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL 405 (541)
.+++|.|..-|.+. +..+|..|...+|.+.+....+. .=-...+....+.-+.+.+++||.+++...
T Consensus 258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l------------~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~ 324 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQL------------SETYDDLWSAFLGRFNDISVEVRMECVESI 324 (1266)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhh------------cccchHHHHHHHHHhccCChhhhhhHHHHh
Confidence 47899999999998 89999999999999987433221 100223555666667778899999999999
Q ss_pred HHhccC
Q 009184 406 SNATSG 411 (541)
Q Consensus 406 ~nl~~~ 411 (541)
.++...
T Consensus 325 ~~~l~~ 330 (1266)
T KOG1525|consen 325 KQCLLN 330 (1266)
T ss_pred HHHHhc
Confidence 998875
No 283
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.09 E-value=63 Score=34.47 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=89.7
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHhhcC---CChhhHHHHHHHHHHhh
Q 009184 161 VPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSNF 229 (541)
Q Consensus 161 i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~i~~Ll~~l~~---~~~~~~~~~a~~~L~~l 229 (541)
+..+..++.+ +.+.++..|+.+++++.. +.+.+...+. ...++.+...|.. ..+..-+..++.+|.|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 4556666654 457788888888887762 2221111111 2255666665532 33444556667777776
Q ss_pred hcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHH
Q 009184 230 CRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIP 304 (541)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~ 304 (541)
-.. ..++.+...+. ..+..++..|+|+|..++...+.. +-+.++++..+ .++++|..
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence 542 23455555554 224679999999999887655443 23556666644 45778888
Q ss_pred HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHH
Q 009184 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346 (541)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 346 (541)
|+..|... .+.. ..+..+...+....+..|+.
T Consensus 536 A~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 536 AVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHH
Confidence 87776432 1211 23445666666553444443
No 284
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=83.87 E-value=13 Score=41.85 Aligned_cols=236 Identities=18% Similarity=0.187 Sum_probs=128.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCC--------HHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV--------VPRFVEFLLREDYPQLQFEAAWALTNIA 145 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~--------i~~Lv~lL~~~~~~~i~~~a~~~L~~l~ 145 (541)
.+..+++.+.++.++.|.-++..++.++...........++.-+ +..+=+++...-...+++.++|+|..+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 46778888889999999999999999887643222222222111 1122222222212468899999999887
Q ss_pred cCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhcCCChhhHHHHHH
Q 009184 146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNAT 223 (541)
Q Consensus 146 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~Ll~~l~~~~~~~~~~~a~ 223 (541)
....+... ...+..+.+++..+..+++...+..+..... ..++.+.. ..+++.++..| .+.+..++..+.
T Consensus 158 ~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 158 KHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA 229 (1549)
T ss_pred HhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence 74322211 1235667777777766666555444432221 11122110 01334444555 566778888888
Q ss_pred HHHHhhhcCCCCCChhhhhchHHHHHHhhccCCh-hH-HHHHHHHHHHhccCChH--H-HHHHHHhCcHHHHHHhhCCCC
Q 009184 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD-EV-LTDACWALSYLSDGTND--K-IQAVIEAGVFPRLAEFLMHPS 298 (541)
Q Consensus 224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v-~~~a~~~L~~l~~~~~~--~-~~~~~~~g~l~~L~~lL~~~~ 298 (541)
..+.-.....+......+..++..+...+..-+. .- .......+..++..... . .+.-.+.|+++.+..++.+.=
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 8777666554333333334444444444332221 00 01111122222222210 0 111223489999999998887
Q ss_pred hhhHHHHHHHHhHhhcCCc
Q 009184 299 PSVLIPALRTVGNIVTGDD 317 (541)
Q Consensus 299 ~~v~~~al~~L~nl~~~~~ 317 (541)
..++..++..+..+.+..+
T Consensus 310 ~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 7888899998888876544
No 285
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.60 E-value=3.9 Score=34.45 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=60.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
+.+..+.+.|.+.++.+++.|+..|-.+...-+.....++.+..++..|+.+++...++.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999888764334455777888999999999884448999999988888775
No 286
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=83.54 E-value=11 Score=31.62 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=58.6
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILK 453 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~ 453 (541)
++..|..-+.++++.++..|+..|-.++.++.......+.+.+++..|..++.. .++.|...++..+..-..
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 566778888889999999999999999988777777777888999999998874 566788888777766554
No 287
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.20 E-value=11 Score=35.93 Aligned_cols=138 Identities=13% Similarity=0.190 Sum_probs=77.5
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-KVVIDHGAVPIFVK----LLY--------SPSDDVREQAVWAL 183 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L 183 (541)
++|.++.++.+.. +.++..++.+|..+....+... ..+...|..+.+-. ++. .++..+...+.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6999999999987 9999999999999998544333 23555665544433 333 24566777777777
Q ss_pred HHhhCC----ChhhHHHHHhcCChHHHHHhhcCCC---hhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC
Q 009184 184 GNIAGD----SPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN 255 (541)
Q Consensus 184 ~nl~~~----~~~~r~~i~~~g~i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~ 255 (541)
..++.- ....|......-.-..++.-+.... .+.+....+..+..+...-..........+++.+...+.++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 777421 1111222111111111333222222 36666666666665555432333334456666666655544
No 288
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.14 E-value=13 Score=30.80 Aligned_cols=74 Identities=8% Similarity=-0.060 Sum_probs=59.1
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC---CChHHHHHHHHHHHHHHHhh
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~---~~~~~~~~~l~~L~~l~~~~ 455 (541)
++..|..-+.++++.++..|+..|-.++.++.......+.+...+..|..++.. .++.+...++..+.......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 556777888889999999999999999988877777777777788889998875 46778888888777665543
No 289
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=82.67 E-value=12 Score=31.57 Aligned_cols=71 Identities=8% Similarity=0.057 Sum_probs=59.5
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENIL 452 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~ 452 (541)
++..|..-+.+.++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|...++..+....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 556777778889999999999999999998888888888888999999999987 67788887777666654
No 290
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.60 E-value=12 Score=36.93 Aligned_cols=218 Identities=18% Similarity=0.119 Sum_probs=106.8
Q ss_pred HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009184 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (541)
Q Consensus 113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 192 (541)
+...++..|..++..+.++......+.++..-...- ..-+...++..+.+-+.+..+.+|..-+..++.+....+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334467777777776655666666666666544311 0011123456666777776677999988888888751110
Q ss_pred hHHHHHhcCChHHHHHhhcC---CChhhHH---HHHHHHHHhhhcCC-CCCCh-hh-----hhchHHH-H--HHhhcc-C
Q 009184 193 CRDLVLSQGGLVPLLAQLNG---QPKLSML---RNATWTLSNFCRGK-PQPPF-DQ-----VSPALPA-L--AHLIHS-N 255 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~-~~-----~~~~l~~-L--~~lL~~-~ 255 (541)
....-.-..+++.|+..+.. ++-...+ ..++.++..++... +.... .. ..+-=|. + -+++.. .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 00011112256667766631 1111111 11111111111111 00000 00 0000000 0 022222 3
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHH
Q 009184 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (541)
Q Consensus 256 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 333 (541)
+++-....+.++..+..........-.....-..++.++-++ .+.+|..|+.++..+....+.. +...++..+-
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 444455556666555544332111111223556677777777 8999999999999998877753 2334455555
Q ss_pred HhhcC
Q 009184 334 NLLSG 338 (541)
Q Consensus 334 ~lL~~ 338 (541)
..+..
T Consensus 251 ~~l~~ 255 (339)
T PF12074_consen 251 KWLSS 255 (339)
T ss_pred HHHHh
Confidence 55544
No 291
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.20 E-value=23 Score=36.39 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=84.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-------cHHHHHHHHHHHHHHhc
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTNIAS 146 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-------~~~i~~~a~~~L~~l~~ 146 (541)
-+.++.+.+-++++..+..|+..|+. ++.++.+ +|.|+.++..+- +-.+.......+..+..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~L-----lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQL-----LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHHH-----HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 56778888888899999999998752 4556554 888888886532 24555666666666665
Q ss_pred CChhHHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-Ch
Q 009184 147 GTSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PK 215 (541)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-~~ 215 (541)
++...-...-..++|.++.++-+ ....+|+.|+..+..+|.+-...-+. +...++..+.+.+.+. ..
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~ 354 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP 354 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 44443332223467777766532 34678888888888887544332222 2333455555555333 23
Q ss_pred hhHHHHHHHHHHhh
Q 009184 216 LSMLRNATWTLSNF 229 (541)
Q Consensus 216 ~~~~~~a~~~L~~l 229 (541)
.....-++..|..|
T Consensus 355 ~st~YGai~gL~~l 368 (576)
T KOG2549|consen 355 LSTHYGAIAGLSEL 368 (576)
T ss_pred chhhhhHHHHHHHh
Confidence 33333344444433
No 292
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.44 E-value=65 Score=37.21 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009184 438 PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 503 (541)
Q Consensus 438 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~ 503 (541)
.+.....+.+|..++.-.-+.-. ..|.+....+ ..++-+..+..+.++++.-.|..-+++
T Consensus 1070 tet~~ltisgIaklf~e~fk~ll----nln~f~~vwe--~ll~flkrl~s~~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLL----NLNGFLDVWE--ELLQFLKRLHSDISPEISLSAIKALQE 1129 (1610)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH----hcccHHHHHH--HHHHHHHHHHhcCChHhHHHHHHHHHH
Confidence 34555666777776653322211 1233333322 235556666677888887776665554
No 293
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.14 E-value=3.7 Score=37.32 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCC
Q 009184 132 QLQFEAAWALTNIASGTSEHTKVVIDHG-------AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CRDLVLSQGG 202 (541)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~i~~~g-------~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~ 202 (541)
.-|..|+.+|+.++- ...+.+.++..+ ++..|++++.. +++-.||.|+-.|.++|..+.. +|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458889999999987 345555554443 33455566654 7899999999999999965554 5566678889
Q ss_pred hHHHHHhhc
Q 009184 203 LVPLLAQLN 211 (541)
Q Consensus 203 i~~Ll~~l~ 211 (541)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999994
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.89 E-value=5.6 Score=33.01 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=56.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHH-HHHHHHHHHHHHhc
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-LQFEAAWALTNIAS 146 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~-i~~~a~~~L~~l~~ 146 (541)
+.+..+.+.|+++++.++..|+..+-.+...-..+...++...+++..|+.+++...+.. ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467778888889999999999999988887542334456667788999999888765333 88888877777665
No 295
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.58 E-value=17 Score=30.36 Aligned_cols=72 Identities=10% Similarity=-0.026 Sum_probs=57.7
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC------CChHHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILK 453 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~~l~~L~~l~~ 453 (541)
++..|..-+.++++.++..|+..|-.++.++.......+.+.+++..|+.++.. .++.|...++..+..-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 556677888899999999999999999988777777788888999999999853 456788877776665543
No 296
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.07 E-value=63 Score=35.25 Aligned_cols=251 Identities=14% Similarity=0.119 Sum_probs=149.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (541)
Q Consensus 76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i 155 (541)
-.+=++++++....+.+++..+-++.... +.+ .++++ .+-.|.+.+..++ ..++...+++...- ......+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~----g~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQS----GKHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhc----cccchhh
Confidence 34445788877777888888888876543 222 33333 3556677777777 78888887777631 2222233
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184 156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (541)
Q Consensus 156 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~ 234 (541)
.. ...+..+.....+.|+.-+..++..++.+..--| +....+.++..-..+.++--.+.++.+...++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 32 2334444445567889999999999998764433 334455555554355555556677777777765431
Q ss_pred CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhH
Q 009184 235 QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGN 311 (541)
Q Consensus 235 ~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~n 311 (541)
....++.-.+..++...+ .......+.+++.+...... -..+....++++ +++..+....-+.++.+
T Consensus 171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 122334444555555443 33456677777777644321 123445566666 34455555566777777
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
++...- ..-.+-++.|.+.++.+....++..+.|.+.+++.
T Consensus 241 Lasrs~-----~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSL-----VAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHH-----HHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 765322 12245567788888765466777778888888765
No 297
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.06 E-value=57 Score=38.91 Aligned_cols=231 Identities=16% Similarity=0.070 Sum_probs=116.5
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
+..++..|..++ |..+..+..+++.++..-++. .++ .+....++.-+.+ .++-.|..-..+++.+-.+.......
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 334444555555 667766777776666521111 111 1123344444433 55555555555555553222111111
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCC---hhHHHHHHH--------
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND---DEVLTDACW-------- 265 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a~~-------- 265 (541)
-.....+..++.+..++.++.++..++.++..+...........+...+..+..+|.+.. .++...--+
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 111123556666665667779999999999988776533335555666666666665432 222111111
Q ss_pred -----HHHHhccCChH--HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcC
Q 009184 266 -----ALSYLSDGTND--KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (541)
Q Consensus 266 -----~L~~l~~~~~~--~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 338 (541)
+++.=...+.. ... ......+-...-++.++++-++..++.++.++-...+.+.. -.-++..|..++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 11111111110 111 11122223333345667888899999999888766654321 12345666777766
Q ss_pred CCchhHHHHHHHHHHHHhc
Q 009184 339 NYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~ 357 (541)
. ..-.|.....++..+..
T Consensus 1110 ~-~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred h-hhhhhhhHHhhhhHHhH
Confidence 6 44455555555555554
No 298
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.06 E-value=42 Score=29.70 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=56.5
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
.++.++++..+++ ..++..|+.++.-+....--+- ...+|.|+.+..++++.++..|...+..+....+.+-+.
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3667777777777 8999999999988877431111 125799999999999999999999999998666544333
No 299
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.75 E-value=9.1 Score=31.77 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=57.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC--CcHHHHHHHHHHHHHHhcC
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASG 147 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~--~~~~i~~~a~~~L~~l~~~ 147 (541)
+.+..+.+.|+++++.++..|+..|-.+......+...++.....+..|+.++... .++.++..++..+...+..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999888764233334555557888899999763 3488999999888887763
No 300
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=79.75 E-value=20 Score=27.82 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHccCCCCcHHHHH-hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184 88 GVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (541)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 166 (541)
+++..|+..+..-+... --....+. ...++..|++.++.+. ...+..++..+..++. ++.....+.+.|+...|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45666666555333322 22223333 4567888999998887 6688999999999888 5777778888899988777
Q ss_pred hhCCCCHHHHHHHHHHH
Q 009184 167 LLYSPSDDVREQAVWAL 183 (541)
Q Consensus 167 lL~~~~~~v~~~a~~~L 183 (541)
+-...++..+..+-..+
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 76666666665544333
No 301
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.22 E-value=32 Score=38.27 Aligned_cols=232 Identities=18% Similarity=0.161 Sum_probs=123.6
Q ss_pred cCCHHHHHH-hhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC---
Q 009184 72 LENLPVMVA-GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--- 147 (541)
Q Consensus 72 ~~~l~~l~~-~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~--- 147 (541)
++.+..+-. +|++.+.+.+...+..+.++.+.. ..+-...-+.--+|.|+.-+..-. ..+|...+.+|---...
T Consensus 465 LeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvnc 542 (2799)
T KOG1788|consen 465 LEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNC 542 (2799)
T ss_pred hHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhcc
Confidence 344444433 456778888888888888887642 222223335667888888776554 45665555444322110
Q ss_pred ChhHHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC---hhhHHHHHH
Q 009184 148 TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNAT 223 (541)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~---~~~~~~~a~ 223 (541)
-|++ . +-.|+-+|+.+ +..+....+.....+..-+..+++.+.+-|.++.|...+.++. .++ +.
T Consensus 543 vPeq-E-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qy--- 610 (2799)
T KOG1788|consen 543 VPEQ-E-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QY--- 610 (2799)
T ss_pred CcHH-H-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hh---
Confidence 1111 1 22355566663 3455666666666777777778888889998888887774321 000 00
Q ss_pred HHHHhhhcCCC-CCChhh---hhchHHHHHHhhccCCh--hHH------HHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009184 224 WTLSNFCRGKP-QPPFDQ---VSPALPALAHLIHSNDD--EVL------TDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (541)
Q Consensus 224 ~~L~~l~~~~~-~~~~~~---~~~~l~~L~~lL~~~d~--~v~------~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~ 291 (541)
...+.....+| .+.+.. ....+-.--+++.+... .+. ...--+|..+..++.++...+.+..++..++
T Consensus 611 sgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklil 690 (2799)
T KOG1788|consen 611 SGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLIL 690 (2799)
T ss_pred hhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEE
Confidence 01111111111 111100 00111111112222110 010 1112355566667777777788888888888
Q ss_pred HhhCCCChhhHHHHHHHHhHhhcCCchh
Q 009184 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (541)
Q Consensus 292 ~lL~~~~~~v~~~al~~L~nl~~~~~~~ 319 (541)
.++- +...|...++++..+....+.+
T Consensus 691 pfli--ndehRSslLrivscLitvdpkq 716 (2799)
T KOG1788|consen 691 PFLI--NDEHRSSLLRIVSCLITVDPKQ 716 (2799)
T ss_pred Eeee--chHHHHHHHHHHHHHhccCccc
Confidence 8873 3446777888888887766653
No 302
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=78.91 E-value=58 Score=30.62 Aligned_cols=181 Identities=20% Similarity=0.175 Sum_probs=102.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhhHHHHHhcCChHHHHHhhcCCC---hhhHHHHHHHHHHh
Q 009184 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSN 228 (541)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~r~~i~~~g~i~~Ll~~l~~~~---~~~~~~~a~~~L~~ 228 (541)
|+.+.+++-+.++. ..+.++..|..++... .+.|-...-.+.+|.++..+.... .......++..|+.
T Consensus 64 Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 33444445554433 3456677777776321 112333333334666666663333 12455677788888
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (541)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 308 (541)
+|....... ...++....+--..+..+....++..|+.-. -++ .+...+..++.+|.++-+.++..++.+
T Consensus 142 ~a~~~~~~~---La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQGLPN---LARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPD-----HEFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCCCcc---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cch-----hHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 886532221 1112222211111223445555555554322 111 112456778889988888899999999
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
|..+....+-... ...+++..+.++++++ .-.+|..+|-++..
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 9999877664432 5667899999999877 34567777666654
No 303
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.79 E-value=1.1e+02 Score=33.52 Aligned_cols=315 Identities=15% Similarity=0.169 Sum_probs=164.6
Q ss_pred HHHHhhcCC--CHHHHHHHHHHHHHHHccC---CCCcHHHHHhc--C-CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184 77 VMVAGVWSN--DSGVQYECTTQFRKLLSIE---RSPPIEEVIRS--G-VVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 77 ~l~~~L~s~--~~~~~~~a~~~l~~l~~~~---~~~~~~~~i~~--g-~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~ 148 (541)
.++..+.++ |+.++..|+..+.+.+... ..+....+.++ . +-..++.++-+.. ..+|.+--.+|+-|+..+
T Consensus 41 ~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~D 119 (960)
T KOG1992|consen 41 LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRD 119 (960)
T ss_pred HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccc
Confidence 455556543 6889999999999988732 01111122211 1 2233455555555 788988888899888633
Q ss_pred -hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhhHHH--------HHhcCChHHHHHhhc-------
Q 009184 149 -SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDL--------VLSQGGLVPLLAQLN------- 211 (541)
Q Consensus 149 -~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-~~~~~~r~~--------i~~~g~i~~Ll~~l~------- 211 (541)
|+.... .+|.|+.-+++.|-.+...++.+-..|. +..+.+|.. ++.. +-.++..++.
T Consensus 120 FP~kWpt-----Ll~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~-f~~Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 120 FPDKWPT-----LLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDR-FAEPLTDLFRKTMELIQ 193 (960)
T ss_pred cchhhHH-----HHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHh
Confidence 544443 3577777787766655555554444443 222222221 1111 2234444441
Q ss_pred -CCChhh-------HHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCC-------------hhHHHHHHHHHHH
Q 009184 212 -GQPKLS-------MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSND-------------DEVLTDACWALSY 269 (541)
Q Consensus 212 -~~~~~~-------~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d-------------~~v~~~a~~~L~~ 269 (541)
...+.. +....+.....|+..+ |.--...+...++...+++..++ .+++...|..+.-
T Consensus 194 ~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~L 273 (960)
T KOG1992|consen 194 RHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNL 273 (960)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHH
Confidence 112222 2222333444444433 22222344667777777776322 2345667777766
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhhCCC-----ChhhHHHHHHHHhHhhcCCchh-------------------------
Q 009184 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHP-----SPSVLIPALRTVGNIVTGDDMQ------------------------- 319 (541)
Q Consensus 270 l~~~~~~~~~~~~~~g~l~~L~~lL~~~-----~~~v~~~al~~L~nl~~~~~~~------------------------- 319 (541)
.+...++..+.++. .++.....+|.+. -..+...|+..|.+++......
T Consensus 274 Y~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~ 352 (960)
T KOG1992|consen 274 YATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE 352 (960)
T ss_pred HHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence 66555555553332 3343344455332 1345566777777776422111
Q ss_pred -HHHHHhcCchHHHHHhhcCCCchhH-HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH-Hhhc--Cc
Q 009184 320 -TQCVIEYQALPCLLNLLSGNYKKSI-KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA-LLEN--AE 394 (541)
Q Consensus 320 -~~~~~~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~-~l~~--~~ 394 (541)
-..+.+..-++.+-+-|..+ |... |+.||..+.-++.....++. .++.. .+..++. ..+. .+
T Consensus 353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt-----------~v~~~-~v~~~l~~y~~nPS~n 419 (960)
T KOG1992|consen 353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVT-----------GVFSS-EVQRLLDQYSKNPSGN 419 (960)
T ss_pred hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhH-----------HHHHH-HHHHHHHHhccCCCcc
Confidence 11223445666677777766 4444 56777888888886655554 44432 2233333 2232 35
Q ss_pred hhHHHHHHHHHHHhccCC
Q 009184 395 FDIKKEAAWAISNATSGG 412 (541)
Q Consensus 395 ~~v~~~a~~aL~nl~~~~ 412 (541)
+.-+..|++.+..++..+
T Consensus 420 Wk~kd~aiyL~talaik~ 437 (960)
T KOG1992|consen 420 WKKKDRAIYLVTALAIKG 437 (960)
T ss_pred ccccchhhhhhHHHHhhc
Confidence 666677777777777643
No 304
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=78.66 E-value=24 Score=33.64 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=74.5
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHH-HHHHhhchhhHHHHHhcCcHHHHHHHhh------------cC
Q 009184 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QVIMHVHAFSIIAVIEANIIGPLVALLE------------NA 393 (541)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~~~~~~~~l~~~~~l~~L~~~l~------------~~ 393 (541)
-++|.++.++.+. ++.+|..++.+|..+....+... . .+.+.|..+.+.+.+. .+
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~-----------~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWD-----------ILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhH-----------HHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 3688999999998 99999999999999998544332 1 2455565554444432 23
Q ss_pred chhHHHHHHHHHHHhccC-------CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 394 EFDIKKEAAWAISNATSG-------GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 394 ~~~v~~~a~~aL~nl~~~-------~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
...+-..|.-++..++.. ........++..|++..+...-+.+.+.++...++.+..++..
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 466777888888877431 1233344445555555544444444577888777777776653
No 305
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=78.47 E-value=51 Score=32.65 Aligned_cols=155 Identities=17% Similarity=0.081 Sum_probs=91.3
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc----------cCChhHHHHHHHHHHHhccC
Q 009184 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------SNDDEVLTDACWALSYLSDG 273 (541)
Q Consensus 204 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~~L~~l~~~ 273 (541)
..+...|.+......+..++.++..|+++...-........++.|+.+-. ..|..+...++.||+|+...
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34455553443344555666677777777644444444555555555432 23567899999999999988
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCC----CC-hhhHHHHHHHHhHhhcCC-chhHHHHHhcCchHHHHHhhcCCC-------
Q 009184 274 TNDKIQAVIEAGVFPRLAEFLMH----PS-PSVLIPALRTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSGNY------- 340 (541)
Q Consensus 274 ~~~~~~~~~~~g~l~~L~~lL~~----~~-~~v~~~al~~L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~------- 340 (541)
+....+...+......+++.+.. .. ..+...-++.|--+..-. +...+.+.+.++++.+-+++.+.-
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 88776767777666666665521 11 123333333333333322 334455667888898888886421
Q ss_pred -------chhHHHHHHHHHHHHhcC
Q 009184 341 -------KKSIKKEACWTVSNITAG 358 (541)
Q Consensus 341 -------~~~v~~~a~~~L~nl~~~ 358 (541)
+...-.++..++.|++..
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeec
Confidence 123446777778888763
No 306
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=78.38 E-value=13 Score=31.13 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=56.7
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc------CCCHHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 498 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~------~~~~~i~~~a~ 498 (541)
++..|..-|.+.++.++..+|..|..+++-+... |...+...+++..+..+.. ..++.|+++..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~----------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil 108 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER----------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKII 108 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH----------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 5667777788999999999999999998754332 5566666777777777764 36799999999
Q ss_pred HHHHHhCCCC
Q 009184 499 KLLETYWLDD 508 (541)
Q Consensus 499 ~il~~~~~~~ 508 (541)
.++..+-...
T Consensus 109 ~li~~W~~~f 118 (139)
T cd03567 109 ELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHh
Confidence 9999886543
No 307
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=78.02 E-value=33 Score=32.86 Aligned_cols=137 Identities=12% Similarity=0.166 Sum_probs=90.6
Q ss_pred HHHhcCchHHHHHhhcCC----------------------CchhHHHHHHHHHHHHhcCChHHHHHHHh---hc------
Q 009184 322 CVIEYQALPCLLNLLSGN----------------------YKKSIKKEACWTVSNITAGNREQIQVIMH---VH------ 370 (541)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~----------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~---~~------ 370 (541)
.+.+.|++|.|-.+++.- ++..+|..-+..+.+++.+.......... ++
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 456677777777766420 01246777778888887733221110000 00
Q ss_pred -hhhHHHHHhcCcHHHHHHHhhcC--chhHHHHHHHHHHHhccCCCH-HHHHHHHHcCChHHHhhhcCCC---ChHHHHH
Q 009184 371 -AFSIIAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTH-EQIKFLVIQGCIKPLCDLLVCP---DPRIVTV 443 (541)
Q Consensus 371 -~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~i~~L~~lL~~~---~~~~~~~ 443 (541)
+-....--+.|++..+++.+... +...+-..+.|+-.+..++++ ....++.+.|+++.+++.+-++ +..+...
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 00000112457888888888764 567888899999999998887 5667888999999999876543 3468888
Q ss_pred HHHHHHHHHHhhHhh
Q 009184 444 CLEGLENILKVGEAE 458 (541)
Q Consensus 444 ~l~~L~~l~~~~~~~ 458 (541)
..+.|+.+++.....
T Consensus 164 ~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 164 NFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHCCCHHH
Confidence 999999999876554
No 308
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.98 E-value=18 Score=29.92 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=56.7
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCCh--HHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP--RIVTVCLEGLENILK 453 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~--~~~~~~l~~L~~l~~ 453 (541)
++..|..-+.++++.++..|+..|-.++.++.......+.+.+++..|..++..... .+...++..+..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 556777888889999999999999999988777777787888999999999876443 367766666555443
No 309
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=77.28 E-value=9.4 Score=27.99 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184 442 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 504 (541)
Q Consensus 442 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~ 504 (541)
..++++|..|-.... -...+.+.+.-..+..|..|++++|...|..++..|
T Consensus 19 ~~~l~~L~~L~~~~~------------t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 19 SRCLDILKKLKKLPI------------TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHHHHHhcCCC------------CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 345666666554322 255677777777899999999999999999999876
No 310
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=77.22 E-value=1.3e+02 Score=33.63 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHH-------h-hc---------------hhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184 341 KKSIKKEACWTVSNITAGNREQIQVIM-------H-VH---------------AFSIIAVIEANIIGPLVALLENAEFDI 397 (541)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~~~-------~-~~---------------~~~~~~l~~~~~l~~L~~~l~~~~~~v 397 (541)
.+.++..+.-+++++|-......+.++ + ++ +.+| ...-...+|.+-..|.++++-|
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-Tam~d~YiP~I~~~L~Dp~~iV 1022 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-TAMTDRYIPMIAASLCDPSVIV 1022 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-HHHHHHhhHHHHHHhcCchHHH
Confidence 566777777788888764333222110 0 00 1133 2223367888888888899999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHcC--ChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 398 KKEAAWAISNATSGGTHEQIKFLVIQG--CIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~~~~~~~~l~~~~--~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
|+.+...|.+++..+-. ++ .| .+..+..++ +.+++++..+--.+..++..
T Consensus 1023 Rrqt~ilL~rLLq~~~v---Kw---~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1023 RRQTIILLARLLQFGIV---KW---NGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHhhhhh---hc---chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 99999999999864311 10 12 233334444 34555665555555555543
No 311
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=75.30 E-value=3 Score=26.14 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=23.8
Q ss_pred HhhhhcCCCCCchHHhhhhhhHHHHHHHHhhHHHHHhhh
Q 009184 11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR 49 (541)
Q Consensus 11 ~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R 49 (541)
+|...||+..++.+.-+|| +...+.-|.+|-+.++..|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence 5777899854544444434 4556777777877777666
No 312
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=74.93 E-value=72 Score=29.67 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhhcCCC-hhhHHHHHHHHHHhhhcCCCC
Q 009184 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQ 235 (541)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~i~~Ll~~l~~~~-~~~~~~~a~~~L~~l~~~~~~ 235 (541)
..+.+.++++++.++..+- ..+|-... +-+.. -..+-.|-+..|.+++.+.. +.-++..++.+|..+....+.
T Consensus 72 ~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~i-lasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRI-LASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHH-HHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 3568999999976554211 11222111 11110 01123456777777774433 566788889999999988765
Q ss_pred CChhhhhchHHHHHHhhccC
Q 009184 236 PPFDQVSPALPALAHLIHSN 255 (541)
Q Consensus 236 ~~~~~~~~~l~~L~~lL~~~ 255 (541)
.....+.-+-..+-..+..+
T Consensus 147 ~Re~vi~~f~~ll~~~l~~~ 166 (249)
T PF06685_consen 147 SREEVIQYFRELLNYFLERN 166 (249)
T ss_pred CHHHHHHHHHHHHHHHhccC
Confidence 55444333333333334333
No 313
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=74.66 E-value=59 Score=28.55 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=59.2
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh
Q 009184 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 319 (541)
....+|.++.-|...+...+.-|...+..+... ..+.+-.++. .++..+-..|.+.++++...++.+|..++...+..
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 367888888888887777777777777777655 4443333332 57777778889999999999999999997765543
Q ss_pred HHHH
Q 009184 320 TQCV 323 (541)
Q Consensus 320 ~~~~ 323 (541)
-..+
T Consensus 115 G~aL 118 (183)
T PF10274_consen 115 GEAL 118 (183)
T ss_pred hHHH
Confidence 3333
No 314
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.60 E-value=43 Score=27.23 Aligned_cols=74 Identities=12% Similarity=0.244 Sum_probs=50.3
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhc-chHHHHHHHhc--------CCCHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA-EGLEKIESLQT--------HDNAEIYE 495 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~L~~--------~~~~~i~~ 495 (541)
+++.|..=|+..++.|...+|.+|..++..|... |...+... ..+..+.+... ..+..|+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~----------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~ 108 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD----------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVRE 108 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH----------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHH
Confidence 5667777788888888889999999999877543 34444332 22223333332 24568999
Q ss_pred HHHHHHHHhCCCC
Q 009184 496 KSVKLLETYWLDD 508 (541)
Q Consensus 496 ~a~~il~~~~~~~ 508 (541)
.|..+++-.|+.+
T Consensus 109 ~A~El~~~if~~~ 121 (122)
T cd03572 109 EAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998764
No 315
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.43 E-value=1.4e+02 Score=34.82 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---C---CChhhHHHHHHHHHHhhhcCC-CCCChhhh
Q 009184 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G---QPKLSMLRNATWTLSNFCRGK-PQPPFDQV 241 (541)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~---~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 241 (541)
.++..+++...+.++.++.....+ .++ .| .+.+...+. . .....+.+.+..+|.-++.+. +..+....
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 345667777777888887643322 111 11 333333331 1 224567778888888888777 77777777
Q ss_pred hchHHHHHHhhc-cCChhHHHHHHHHHHHh
Q 009184 242 SPALPALAHLIH-SNDDEVLTDACWALSYL 270 (541)
Q Consensus 242 ~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l 270 (541)
.++++.+...-. ..|-.+--.|+..+..+
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtv 956 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTV 956 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 888888887765 34555555554444433
No 316
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=74.18 E-value=1.4e+02 Score=32.46 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009184 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (541)
Q Consensus 300 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (541)
.....+++||..+....-.....+-....+-.+...+... .+.+..+++.+++.+|..
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr-~pnmm~dvvkllsalciV 264 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPR-EPNMMTDVVKLLSALCIV 264 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCcc-CccHHHHHHHHHHHHhee
Confidence 4556677777777654332222222333455666777666 778888888888888763
No 317
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.00 E-value=40 Score=34.35 Aligned_cols=141 Identities=11% Similarity=0.092 Sum_probs=77.8
Q ss_pred chHHHHHhhcCCC---chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHH
Q 009184 328 ALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWA 404 (541)
Q Consensus 328 ~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~a 404 (541)
+-..|..+|.... ++.++...+.+|.-+-..+.-... .++..++.++..++...|.-+..-
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~~~----------------~LL~lff~l~~~~dk~lRkllyth 80 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLIVAE----------------DLLELFFPLLRCGDKNLRKLLYTH 80 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCCHH----------------HHHHHHHHHHhcCchhHHHHHHHH
Confidence 3445667776542 578888888887766543222222 466778888888887777665554
Q ss_pred HHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHH
Q 009184 405 ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES 484 (541)
Q Consensus 405 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 484 (541)
|...+.+.+......=....+-..+..+|+.+|+.--..++..+..|-+.+-= . +...+..+..
T Consensus 81 iv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW------------~----d~~tV~i~~~ 144 (616)
T KOG2229|consen 81 IVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIW------------N----DSKTVNIITT 144 (616)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccc------------c----cchhHHHHHH
Confidence 44433322211111111222334667888888887555556555555442211 1 2333444444
Q ss_pred HhcCCCHHHHHHHHHH
Q 009184 485 LQTHDNAEIYEKSVKL 500 (541)
Q Consensus 485 L~~~~~~~i~~~a~~i 500 (541)
-.-|.++.|.-.+...
T Consensus 145 acf~~~~ki~vs~l~F 160 (616)
T KOG2229|consen 145 ACFSKVPKILVSGLRF 160 (616)
T ss_pred HHhccCcHHHHhhhHH
Confidence 4677888876665543
No 318
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.64 E-value=19 Score=30.21 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=54.7
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh-cCCCHH---HHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAE---IYEKSVKL 500 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~---i~~~a~~i 500 (541)
++..|..-|.+.++.++..+|..|..+++.+... |...+-...+++.|..+. .+.... |++++..+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~----------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~l 112 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR----------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILEL 112 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH----------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH----------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Confidence 4666777778899999999999999998865332 566666677888888864 444444 99999999
Q ss_pred HHHhCC
Q 009184 501 LETYWL 506 (541)
Q Consensus 501 l~~~~~ 506 (541)
|..+-.
T Consensus 113 l~~W~~ 118 (140)
T PF00790_consen 113 LQEWAE 118 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988743
No 319
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=73.62 E-value=2.1e+02 Score=35.93 Aligned_cols=255 Identities=13% Similarity=0.084 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH---HH--hcCChHHHHH
Q 009184 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL---VL--SQGGLVPLLA 208 (541)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~---i~--~~g~i~~Ll~ 208 (541)
...|.+.+.++-.........+ -..+...+...+++++..+..++..+......+.+. .. ....+..++.
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~ 535 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFV-----QQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLT 535 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHH
Confidence 4446666666654211111111 122445666788888888876666554333221111 11 1122333443
Q ss_pred hhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009184 209 QLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (541)
Q Consensus 209 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 288 (541)
+-...+++.++......+. .. ......-...+..+...+....-.++..+...+++++..++...-.-...-.+.
T Consensus 536 ~aia~~~~~i~~~v~~~l~---~~--~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~ 610 (2341)
T KOG0891|consen 536 VAIADTDPDIRIRVLSSLN---ER--FDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE 610 (2341)
T ss_pred HhccCCCcchhhhHHhhhc---cc--hhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH
Confidence 3334555554444333332 11 000111122333344445555566777777788888876663322222212222
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh
Q 009184 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368 (541)
Q Consensus 289 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 368 (541)
.+-.+-.+....+...+..-+..+..+........+ ...+..++..+... +..+.+.+..+++.++..+-....
T Consensus 611 ~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v-~~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~---- 684 (2341)
T KOG0891|consen 611 LLTELEFSGMARTKEESAKLLCELIISSPVLISPYV-GPILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMV---- 684 (2341)
T ss_pred HhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc-CchHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhh----
Confidence 222222222222222222222223322332222222 34567778888887 778889999999999984333332
Q ss_pred hchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCC
Q 009184 369 VHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 369 ~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~ 412 (541)
..++ ..++.+.+.+.. ....-+..+.+++.++....
T Consensus 685 -------~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 685 -------KWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred -------hccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 3333 444555555443 45667788899999988654
No 320
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=73.52 E-value=69 Score=35.36 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=91.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.+..+...+.++++......+.++..+.....-++.. ...-++.-..-.+..- ..+......+|..++...++...
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 4566777777788877777777777766543222222 1111112222222222 46777788999999998888888
Q ss_pred HHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 154 VVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 154 ~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
.++. .+....++.++-+++.++.+.|...|..+..... |.. ++..++.. .-........+.+..+...
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R~e-----~i~~ll~~----~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--RLE-----AIQALLQS----NFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--HHH-----HHHHHHHH----hHHHHHHHHHHHHHHHHhh
Confidence 8775 6888999999999999999999999998874322 211 23333322 2234455666666666655
Q ss_pred C
Q 009184 233 K 233 (541)
Q Consensus 233 ~ 233 (541)
.
T Consensus 587 ~ 587 (727)
T PF12726_consen 587 K 587 (727)
T ss_pred h
Confidence 3
No 321
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=73.09 E-value=36 Score=35.58 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=98.1
Q ss_pred CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-----------cCChhHHHHHHHHHHHhccCChHHHHHH
Q 009184 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-----------SNDDEVLTDACWALSYLSDGTNDKIQAV 281 (541)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-----------~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 281 (541)
+++.++...+-..|..+... .....++..|..+.. ..++.++...+..|+.-.... .
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------T 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------h
Confidence 34555666666666555543 112445555555544 124556666555554321000 0
Q ss_pred HHhCcHHHHHHhhCCC--ChhhHHHHHHHH---hHhhcCCchhHHHHHhcCchHHHHHhhc-------CCCchhHHHHHH
Q 009184 282 IEAGVFPRLAEFLMHP--SPSVLIPALRTV---GNIVTGDDMQTQCVIEYQALPCLLNLLS-------GNYKKSIKKEAC 349 (541)
Q Consensus 282 ~~~g~l~~L~~lL~~~--~~~v~~~al~~L---~nl~~~~~~~~~~~~~~~~l~~L~~lL~-------~~~~~~v~~~a~ 349 (541)
.-...+..+..-|... +..++..++..+ ...........-..+...++..+.+++. ...+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1112333333444444 566777777777 5555544432222222233333333442 112678999999
Q ss_pred HHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 350 WTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 350 ~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
.+||.++...+.... -+-+++..|++.|..++++++..+-.||..++.
T Consensus 396 e~lG~L~~~~p~l~~-------------~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS-------------KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHccCccccc-------------ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 999999997665432 234678888998988889999998888888865
No 322
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.30 E-value=1.6e+02 Score=32.32 Aligned_cols=151 Identities=13% Similarity=0.188 Sum_probs=77.7
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC-CChHHH-------HHhhCC----CCHHHHHHHHHHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH-GAVPIF-------VKLLYS----PSDDVREQAVWALG 184 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L-------~~lL~~----~~~~v~~~a~~~L~ 184 (541)
.+|.++.+|+.+. .-+...|+.++-.+-.-.......+... .+.|.+ ...++. +++-+-....+.++
T Consensus 499 ~~p~li~~L~a~s-~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 499 LLPRLIRFLEAES-RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHhccCcc-hHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 5899999999987 7888889888887765333322223222 222212 222222 23333333333332
Q ss_pred HhhCCChhhHHHHHhcCChHHHHHhh----cCCChhh----HHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCC
Q 009184 185 NIAGDSPRCRDLVLSQGGLVPLLAQL----NGQPKLS----MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND 256 (541)
Q Consensus 185 nl~~~~~~~r~~i~~~g~i~~Ll~~l----~~~~~~~----~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d 256 (541)
-.-..--+.... .+..|.+++ +...++. +.+..+-++...|...+.........++|.+...|..+-
T Consensus 578 i~~~~i~p~~~~-----~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI 652 (960)
T KOG1992|consen 578 ILQSAIIPHAPE-----LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI 652 (960)
T ss_pred hCHHhhhhhhhH-----HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 211000001111 122222222 2233333 344444455555555555445556777888777777776
Q ss_pred hhHHHHHHHHHHHhccC
Q 009184 257 DEVLTDACWALSYLSDG 273 (541)
Q Consensus 257 ~~v~~~a~~~L~~l~~~ 273 (541)
.+...+++..++.+...
T Consensus 653 ~EfiPYvfQlla~lve~ 669 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEH 669 (960)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888888777643
No 323
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=72.24 E-value=41 Score=31.73 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHHHHhhHhhhhcC-----CCCcchhhhHhhhcchHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCCCC
Q 009184 437 DPRIVTVCLEGLENILKVGEAEKNLG-----NTDVNVFTQMIDDAEGLEKIESLQTHDN-AEIYEKSVKLLETYWLDDED 510 (541)
Q Consensus 437 ~~~~~~~~l~~L~~l~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~l~~L~~~~~-~~i~~~a~~il~~~~~~~~~ 510 (541)
|..+++.+|..++|++...+...... ....+.+...|.+.|.++.|..+..+.+ .+-.....+|+.-.|-+.+.
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 45689999999999998733221100 0023456777888999999999977763 33334566777777766543
Q ss_pred C
Q 009184 511 E 511 (541)
Q Consensus 511 ~ 511 (541)
+
T Consensus 213 ~ 213 (266)
T PF04821_consen 213 E 213 (266)
T ss_pred H
Confidence 3
No 324
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=71.86 E-value=17 Score=26.75 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=30.6
Q ss_pred hhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184 470 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 504 (541)
Q Consensus 470 ~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~ 504 (541)
...+.+.+.-..+..|..|++++|...|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55677788778899999999999999999999876
No 325
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=71.00 E-value=1.2e+02 Score=30.32 Aligned_cols=158 Identities=11% Similarity=0.067 Sum_probs=87.0
Q ss_pred CHHHHHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhc--C-CC------cHHHHHHHHHHHHH
Q 009184 74 NLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL--R-ED------YPQLQFEAAWALTN 143 (541)
Q Consensus 74 ~l~~l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~--~-~~------~~~i~~~a~~~L~~ 143 (541)
....+.+.|..+- +..+...+..++-+ +.+ ....+.+.....++.|+.+-. + ++ +.++..+|..||+|
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrIL-SRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcN 123 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRIL-SRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCN 123 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHH-hcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHH
Confidence 3455666666655 34555666666544 433 222222222223444444432 1 11 25789999999999
Q ss_pred HhcCChhHHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhCCChhhHHH-HHhcCChHHHHHhhcC-----
Q 009184 144 IASGTSEHTKVVIDHGAVPIFVKLLYSP-----SDDVREQAVWALGNIAGDSPRCRDL-VLSQGGLVPLLAQLNG----- 212 (541)
Q Consensus 144 l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~r~~-i~~~g~i~~Ll~~l~~----- 212 (541)
+...++..++...+......+++.+... ...+...-++.|.-+..-.+..|.. +.+.++++.+.+.+..
T Consensus 124 lvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 124 LVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred HHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 9999999999998887777777765321 1112222233333333333344544 4466677877777732
Q ss_pred C---------ChhhHHHHHHHHHHhhhcCC
Q 009184 213 Q---------PKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 213 ~---------~~~~~~~~a~~~L~~l~~~~ 233 (541)
+ .+.+....++.++.|++.+.
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1 12234455666677776654
No 326
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=70.61 E-value=80 Score=34.33 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 298 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (541)
.+..|..++..|+.++...+...-.+.+..+++.|+++|..+.+..+...|+.+|.-+.-.-+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 346899999999999999888888899999999999999887677777888888887765433
No 327
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=69.86 E-value=26 Score=34.49 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=59.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC------cHHHHHHHHHHHHHHhcCC
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~------~~~i~~~a~~~L~~l~~~~ 148 (541)
+..+.+.+.+++...+..|+..|+. ++.++. ++|.|+.++...- +.......+..+..|.. +
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~-----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N 247 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRT------DPGLQQ-----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-N 247 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcc------CCCchh-----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-C
Confidence 4555555656666666666666542 333433 5888888876541 14445555566666655 3
Q ss_pred hhHHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhC
Q 009184 149 SEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAG 188 (541)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~ 188 (541)
+...-...=..++|.++.++-+ +...+|+.|+..|+.+|.
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 3332222222367777766521 346889999999888873
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.86 E-value=39 Score=36.89 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=100.8
Q ss_pred CCcHHHHHhcCCHHHHHHhhcCCCc-------HHHHHHHHHHHHHHhcCChhHHHHHHh--------CCChHHHHHhhCC
Q 009184 106 SPPIEEVIRSGVVPRFVEFLLREDY-------PQLQFEAAWALTNIASGTSEHTKVVID--------HGAVPIFVKLLYS 170 (541)
Q Consensus 106 ~~~~~~~i~~g~i~~Lv~lL~~~~~-------~~i~~~a~~~L~~l~~~~~~~~~~i~~--------~g~i~~L~~lL~~ 170 (541)
-+..+.+...+.+..++++...+.+ -++...|+.+|.-+.+- |+.+..+.. ..++..++..-..
T Consensus 591 w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g 669 (1516)
T KOG1832|consen 591 WPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANG 669 (1516)
T ss_pred chHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccc
Confidence 4456667777888888888765431 24555677777666663 444444432 1244444443322
Q ss_pred ----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh--HHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhch
Q 009184 171 ----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244 (541)
Q Consensus 171 ----~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i--~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 244 (541)
-+++++..|+.+|-|+....|.+|...+..-.- ..=-..+...+......+.+.-.++-.++ ..+
T Consensus 670 ~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndG 740 (1516)
T KOG1832|consen 670 SNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDG 740 (1516)
T ss_pred cccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------Ccc
Confidence 479999999999999988887776654321000 00001122233344455555555555554 567
Q ss_pred HHHHHHhhccCC-----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184 245 LPALAHLIHSND-----DEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (541)
Q Consensus 245 l~~L~~lL~~~d-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 285 (541)
+..|+++|+... ..++.-||.+|.-|+..+. ..+.+.+..
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t-VrQIltKLp 785 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT-VRQILTKLP 785 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH-HHHHHHhCc
Confidence 888889987532 4588999999999997665 335444433
No 329
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=69.32 E-value=23 Score=28.41 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=50.2
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH------hcCCCHHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL------QTHDNAEIYEKSV 498 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L------~~~~~~~i~~~a~ 498 (541)
++..|..=|.+.++.++..+|..|..+++.+... |...+.....+..+..+ ....+..|++++.
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~ 107 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAI 107 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHH
Confidence 4566666677789999999999999999876443 45555555555444322 1345889999999
Q ss_pred HHHHHhC
Q 009184 499 KLLETYW 505 (541)
Q Consensus 499 ~il~~~~ 505 (541)
.+++.+.
T Consensus 108 ~l~~~w~ 114 (115)
T cd00197 108 ELVQLWA 114 (115)
T ss_pred HHHHHHh
Confidence 9998774
No 330
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=68.71 E-value=1.2e+02 Score=29.46 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=82.5
Q ss_pred HHHHHHhhcCCC---cHHHHHHHHHHHHHHhcCChhHHHHHHhCC-----------ChHHHHHhhC------CCCHHHHH
Q 009184 118 VPRFVEFLLRED---YPQLQFEAAWALTNIASGTSEHTKVVIDHG-----------AVPIFVKLLY------SPSDDVRE 177 (541)
Q Consensus 118 i~~Lv~lL~~~~---~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g-----------~i~~L~~lL~------~~~~~v~~ 177 (541)
+..|+.++-..+ .-++|..|+.|+.....++++.+..+++.- ....|+..|- +.++.-.-
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence 444444433222 378999999999999999988887775421 0112333322 12222222
Q ss_pred HHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc----
Q 009184 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---- 253 (541)
Q Consensus 178 ~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~---- 253 (541)
-|+.+|..+..++++.++.++.- ...... .-......++.+..+|.
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V--------------------------~~~~~~----~ge~~vtliq~v~~lL~~~l~ 165 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRV--------------------------TEGDES----SGEEPVTLIQTVSELLIASLR 165 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT----------------------------EE--S----TTS--EEHHHHHHHHTTT---
T ss_pred HHHHHHHHHHhcCHHHHHHHHcc--------------------------cCCCCC----CCCCcccHHHHHHHHHHhhhh
Confidence 34445555555555444443321 000000 00111223444444332
Q ss_pred -cCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC---CChhhHHHHHHHHhHhhcC
Q 009184 254 -SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH---PSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 254 -~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~---~~~~v~~~al~~L~nl~~~ 315 (541)
..++.+..--+..|+.-..+++.....++.. ..++.|+..... .+.-++--+...||-+...
T Consensus 166 ~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 166 RNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp -T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred cCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 3356666666666655555666555666665 578888887533 3445666666667766553
No 331
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=67.57 E-value=1.8e+02 Score=31.06 Aligned_cols=164 Identities=11% Similarity=0.060 Sum_probs=80.1
Q ss_pred hhccCChhHHHHHHHHHHHhccCChHHHHHHH---HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhc-
Q 009184 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVI---EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY- 326 (541)
Q Consensus 251 lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~- 326 (541)
.+..-..+.+..|+-+|..+..+......... ...++..++..+. .++..+..++++|.|+..+ +...+.+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~ 629 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRL 629 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHH
Confidence 33344566677777777776655443222111 2235556666655 5677788999999999986 3333222211
Q ss_pred -CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc-----CchhHHHH
Q 009184 327 -QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN-----AEFDIKKE 400 (541)
Q Consensus 327 -~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-----~~~~v~~~ 400 (541)
.++..+...-..+ +..++.......-|.+.. .++ .--+.+..+.|...+.. ++.+..-.
T Consensus 630 ~~i~~~~~~~~s~~-~knl~ia~atlaln~sv~---l~~-----------~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR 694 (745)
T KOG0301|consen 630 ESILDPVIEASSLS-NKNLQIALATLALNYSVL---LIQ-----------DNEQLEGKEVLLSAISTLLEPVDDLEAIYR 694 (745)
T ss_pred HHHhhhhhhhhccc-chhHHHHHHHHHHHHHHH---HHh-----------cccccchHHHHHHHHHhhcccchhHHHHHH
Confidence 1222222222222 455665555555554431 111 11112344444443332 23444556
Q ss_pred HHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184 401 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 433 (541)
Q Consensus 401 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 433 (541)
.+.||++++... .....+.+.--+..+..-+
T Consensus 695 ~l~AlgtL~t~~--~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 695 LLVALGTLMTVD--ASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred HHHHHHhhcccc--HHHHHHHHhcCHHHHHHHH
Confidence 677888887742 2333444433344444433
No 332
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=67.13 E-value=49 Score=34.19 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=55.1
Q ss_pred HHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCC------------CHHHHHHHHHcCChHHHhhh-cCCCChHHH
Q 009184 376 AVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGG------------THEQIKFLVIQGCIKPLCDL-LVCPDPRIV 441 (541)
Q Consensus 376 ~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~------------~~~~~~~l~~~~~i~~L~~l-L~~~~~~~~ 441 (541)
.+.+.++++.|+.+|.. .+.+++..|+..|+.++..+ .......|.....+..|++. |........
T Consensus 57 wL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~l 136 (475)
T PF04499_consen 57 WLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSL 136 (475)
T ss_pred HHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchH
Confidence 55678999999999974 46889999999988886532 13455666777778877774 432334455
Q ss_pred HHHHHHHHHHHHhh
Q 009184 442 TVCLEGLENILKVG 455 (541)
Q Consensus 442 ~~~l~~L~~l~~~~ 455 (541)
..++.++..|++..
T Consensus 137 vn~v~IlieLIRkn 150 (475)
T PF04499_consen 137 VNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666666544
No 333
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=66.93 E-value=75 Score=26.54 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=55.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhh---HHHHHHHHHHhhhcCC
Q 009184 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLS---MLRNATWTLSNFCRGK 233 (541)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~---~~~~a~~~L~~l~~~~ 233 (541)
++..|.+-|.+.++.++..|+..|-.+..++ +.++..+....++..|..++....... ++..++..+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 3566778888899999999999998888665 557777777778888888875444333 8888887777666543
No 334
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=66.79 E-value=56 Score=32.22 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred hhchHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----------CCChhhHH
Q 009184 241 VSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----------HPSPSVLI 303 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~----------~~~~~v~~ 303 (541)
...++|.++.++... +.......+..+..|..++.-.....+. .+++.++.++- .+++.+|.
T Consensus 208 l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd 286 (343)
T cd08050 208 LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRD 286 (343)
T ss_pred chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHH
Confidence 356677777766422 4566777777777777666544443443 37777777661 24578999
Q ss_pred HHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCch-hHHHHHHHHHHHH
Q 009184 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNI 355 (541)
Q Consensus 304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 355 (541)
.|..+++.++........ -+...+...+.+.+.++..+ ....-|...|+.+
T Consensus 287 ~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 287 YAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999999864332211 12334555666666654233 2355555555554
No 335
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=66.37 E-value=78 Score=27.82 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=50.3
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhhcC-CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (541)
Q Consensus 202 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 275 (541)
.++.+..-| ...+....-.|...+..+... ...........+++.|...|.+.|+++...++.+|..|+...+
T Consensus 39 ~Lpif~dGL-~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGL-RETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhh-hccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 466667777 444555555566666666555 3444445556777777888889999999999999999964443
No 336
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=64.63 E-value=65 Score=27.85 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHccC-----CCC---cHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH-h
Q 009184 87 SGVQYECTTQFRKLLSIE-----RSP---PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI-D 157 (541)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~-----~~~---~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~-~ 157 (541)
...+.-++..+..++... +.+ ....+++..+.+.+++.+.+++ +.+-..+++++..+... .+..+. +
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344555666666555432 122 4556677788999999998887 89999999999998853 222222 2
Q ss_pred CC-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 009184 158 HG-AVPIFVK-LLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (541)
Q Consensus 158 ~g-~i~~L~~-lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~ 200 (541)
.+ .++.++. ++++++ ..-++.++.++..++.+..-..+.....
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNY 158 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHc
Confidence 12 2344444 666533 4678889999999998776555554443
No 337
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=64.56 E-value=15 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=30.1
Q ss_pred hhHhhhcchHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 009184 470 TQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLETY 504 (541)
Q Consensus 470 ~~~i~~~~~~~~l~~L~~~-~~~~i~~~a~~il~~~ 504 (541)
...+.+++.-..+..|..| ++++|...|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5677788888899999888 9999999999999876
No 338
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=64.06 E-value=50 Score=27.82 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=53.4
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHH
Q 009184 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (541)
Q Consensus 245 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~ 324 (541)
...|+.+|..+...-....+..|.+=..-..+. ...++.+++..++.-=.....--...|+..||.+..|..
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------- 95 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------- 95 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-------
Confidence 445666666554333334444444433211111 234555655555544333333456788899988876554
Q ss_pred hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 325 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
+..|+.+|.++ +..+...|+.+|.+..-
T Consensus 96 ----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 55788999888 88999999999998765
No 339
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=63.93 E-value=13 Score=28.02 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=43.6
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHHH
Q 009184 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----HSNDDEVLTDACWAL 267 (541)
Q Consensus 198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L 267 (541)
.+..++.|+..++....+.+++...+.++..+...... ....+.+.+...+ ..+++.+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE----NIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----HHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44557888888886778899999999999999876421 2233344444443 345666666665554
No 340
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=63.90 E-value=45 Score=27.77 Aligned_cols=125 Identities=16% Similarity=0.244 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC------C---hHHHHH----HHH
Q 009184 218 MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG------T---NDKIQA----VIE 283 (541)
Q Consensus 218 ~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~------~---~~~~~~----~~~ 283 (541)
++...+.+++.++... |.. ....++.++.++.+ ++......+..|..+.+. . ..+... +.+
T Consensus 4 i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4556666777776554 332 24466677777665 344444444444443311 0 111111 111
Q ss_pred --hCcHHHHHHhhCCCC----hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184 284 --AGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (541)
Q Consensus 284 --~g~l~~L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (541)
..+++.+...+.... ..+...++.++......-+ ...+.+.++++.+.++|.++ .++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 134444555554322 7788999999999887443 34566778999999999544 5677787765
No 341
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=63.78 E-value=2.1e+02 Score=30.55 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVI---DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll 207 (541)
++++.-|+.+|.-++...+..-..+. ....+..++..+. .++..+-.++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 78899999988888775433322222 2234555555554 4566777899999999887 5466665543 33344
Q ss_pred Hhhc---CCChhhHHHHHHHHHHhhhcC--CCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHH
Q 009184 208 AQLN---GQPKLSMLRNATWTLSNFCRG--KPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 281 (541)
Q Consensus 208 ~~l~---~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~ 281 (541)
..+. ..++..++........|++-. ....+......+...+..++.. +|-+.....+.+|++|+..+....+ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 3332 223344444444333343321 1111111222222333333332 2344566777888888876655444 3
Q ss_pred HHhCcHHHHHHhhC
Q 009184 282 IEAGVFPRLAEFLM 295 (541)
Q Consensus 282 ~~~g~l~~L~~lL~ 295 (541)
.+.--+..++.-++
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 33334555555553
No 342
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=63.17 E-value=1.3e+02 Score=30.82 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=64.7
Q ss_pred CcHHHHHHHhhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC---ChHHH--HHHHHHHHHHHHh
Q 009184 381 NIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP---DPRIV--TVCLEGLENILKV 454 (541)
Q Consensus 381 ~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~---~~~~~--~~~l~~L~~l~~~ 454 (541)
-+|..|++-++.+ +..++..++.+|..|+.... ..+.=-...+++.||.++..+ .|.+. ...-+++-.+.+-
T Consensus 312 PiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~ 389 (441)
T PF12054_consen 312 PIIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKE 389 (441)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhh
Confidence 3667787777765 68899999999998875321 000001124577788877432 22222 1111222222221
Q ss_pred hHhhh--hcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 009184 455 GEAEK--NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 501 (541)
Q Consensus 455 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il 501 (541)
..... .........-...|.+-|+...|..|..+-.+++.++.-.+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw 438 (441)
T PF12054_consen 390 EDKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPKLW 438 (441)
T ss_pred cccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 11100 000111222345678899999999998888888877665544
No 343
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=62.75 E-value=2.5e+02 Score=31.09 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhc
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL 461 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 461 (541)
+-..+...+..+++...+..+.++.++..-......+ ...-++.-..-.+..-..+...+.++|.++....+.
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~---- 514 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS---- 514 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----
Confidence 3445555566677788888888888876532111000 000111111111111112334444555555554333
Q ss_pred CCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009184 462 GNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD 508 (541)
Q Consensus 462 ~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~ 508 (541)
....++.+.+....+-.+.-|+++++|+.|.++|...|+.+
T Consensus 515 ------~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 515 ------HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred ------HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 35778888889999999999999999999999999999743
No 344
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=62.49 E-value=2.2e+02 Score=30.43 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=47.6
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh-------hHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-------EHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAG 188 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~-------~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~ 188 (541)
=+..+|+-++.++ ++++..|+..+......+. ...+.+.. -...|..+..+ .+++.+..++-.|+-+|.
T Consensus 49 dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 49 DLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSVLAM 125 (878)
T ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHHHhe
Confidence 4788999999999 9999999999988776432 22222221 12333344333 456778888888888885
Q ss_pred CCh
Q 009184 189 DSP 191 (541)
Q Consensus 189 ~~~ 191 (541)
...
T Consensus 126 t~s 128 (878)
T KOG2005|consen 126 TMS 128 (878)
T ss_pred eec
Confidence 443
No 345
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.19 E-value=2.6e+02 Score=31.14 Aligned_cols=41 Identities=15% Similarity=0.005 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC
Q 009184 395 FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 435 (541)
Q Consensus 395 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 435 (541)
...|...+..+..++...+......+...++++.+.+++..
T Consensus 336 G~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 336 GFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred chHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 35677888888888887777777777788888777777654
No 346
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=61.15 E-value=1.7e+02 Score=28.56 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=100.0
Q ss_pred hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh----cCCCchhHH-HHHHHHHHHHhc----CChHHHHHHHhhch
Q 009184 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL----SGNYKKSIK-KEACWTVSNITA----GNREQIQVIMHVHA 371 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~v~-~~a~~~L~nl~~----~~~~~~~~~~~~~~ 371 (541)
++...++.+.......+... . +....++.|+..+ +.. .|..| .++..+++.++. ...+.+.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~-~-v~~~~i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~------- 112 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE-E-VANNFIPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVP------- 112 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH-H-HHHHTHHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHH-------
T ss_pred HHHHHHHHHHHHHhccCCHH-H-HHHHHHHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHH-------
Confidence 56677777777766554332 2 3345566655532 222 23333 234444444443 2223333
Q ss_pred hhHHHHHhcCcHHHHHHHhhcC---chhHHHHHHHHHHHhccCC-------CHHHHHHHHHcCChHHHhhhcCCCChHHH
Q 009184 372 FSIIAVIEANIIGPLVALLENA---EFDIKKEAAWAISNATSGG-------THEQIKFLVIQGCIKPLCDLLVCPDPRIV 441 (541)
Q Consensus 372 ~~~~~l~~~~~l~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 441 (541)
.+.+ .++...+.++..+ -|+.+..-...|..+...+ ++++.+ .+++.+.--+++.++++.
T Consensus 113 ----~I~~-~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~~~~I~ 182 (319)
T PF08767_consen 113 ----QILE-AVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHTNREIS 182 (319)
T ss_dssp ----HHHH-HHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSSSHHHH
T ss_pred ----HHHH-HHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCCcHHHH
Confidence 3333 5666777777653 3788877777777766532 222222 245667777788999999
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHH----HHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184 442 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI----ESLQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 442 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l----~~L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
..+|.++..++...... ...+...+-..-.++.+ ..+.........+....++..+|..
T Consensus 183 ~~~L~~l~~ll~~~~~~-------~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 183 ETGLNILLELLNNVSKT-------NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999765551 11123333333333333 3445667777777777888888843
No 347
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=60.47 E-value=1e+02 Score=31.61 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (541)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 166 (541)
...|..|+++|..+++.-..+....+.+ +.|+..|++.. ..-|..|+.++...+..............+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3567889999999887643444443322 26888999887 667777888888887743222111001123456666
Q ss_pred hhCC
Q 009184 167 LLYS 170 (541)
Q Consensus 167 lL~~ 170 (541)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 7764
No 348
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=60.31 E-value=59 Score=25.74 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=53.5
Q ss_pred CchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--CchhHHHHH
Q 009184 327 QALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AEFDIKKEA 401 (541)
Q Consensus 327 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a 401 (541)
|++..+...+.+.. +..-|+.+..+++.+.......+. .+.|.+...|.+ ..++++..|
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~----------------~a~pQI~acL~saL~~~eL~~~a 74 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS----------------SALPQIMACLQSALEIPELRSLA 74 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhCchhHHHHH
Confidence 55666666666552 335588899988888773233333 355666666665 367899999
Q ss_pred HHHHHHhccCCCHHHHHHHHH
Q 009184 402 AWAISNATSGGTHEQIKFLVI 422 (541)
Q Consensus 402 ~~aL~nl~~~~~~~~~~~l~~ 422 (541)
+.+...++..-+.+....+++
T Consensus 75 l~~W~~~i~~L~~~~l~~ll~ 95 (107)
T smart00802 75 LRCWHVLIKTLKEEELGPLLD 95 (107)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 999998887666666665544
No 349
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.76 E-value=1.5e+02 Score=29.46 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=80.3
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHH
Q 009184 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (541)
Q Consensus 244 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 323 (541)
-+.-|+..+.+.+..++.+++..+..+....+.... .-...+++.+..+..+.+..+|......+-.+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 345567778889999999999999877655443222 2223567777788888888899998888887654332222223
Q ss_pred HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (541)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (541)
.-.=+++++...|.+. .+.+|..+...+.-+....
T Consensus 138 ~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 3334567777788888 8999999999999888743
No 350
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=59.70 E-value=6.4 Score=35.40 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=37.1
Q ss_pred chHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccC
Q 009184 9 ADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQN 55 (541)
Q Consensus 9 ~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~ 55 (541)
...|...||+..+.-|.|.||++...++.|.+|-+...+.|+....+
T Consensus 23 ~hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~dd 69 (325)
T KOG3132|consen 23 SHPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAVDD 69 (325)
T ss_pred cCchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhcccc
Confidence 45799999995455667777777799999999999999999875443
No 351
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=58.69 E-value=41 Score=28.03 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (541)
Q Consensus 257 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 309 (541)
.++...++.++.......+ ...+...++++.+..+|.+++ ++..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 6677888888877665333 344666778888888884444 577777765
No 352
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=58.61 E-value=67 Score=33.21 Aligned_cols=83 Identities=22% Similarity=0.154 Sum_probs=53.2
Q ss_pred hHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-------------hhhHHHHHhcCChHHHHHhhcCCCh
Q 009184 150 EHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-------------PRCRDLVLSQGGLVPLLAQLNGQPK 215 (541)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-------------~~~r~~i~~~g~i~~Ll~~l~~~~~ 215 (541)
...+.+.+.++|+.|+.+|.. .+++++..|+.+|..|..-+ ......+.....+..|+..+.....
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 344555678999999999975 56888999998888775321 1223334445566667766644233
Q ss_pred hhHHHHHHHHHHhhhcC
Q 009184 216 LSMLRNATWTLSNFCRG 232 (541)
Q Consensus 216 ~~~~~~a~~~L~~l~~~ 232 (541)
.....+++.++..|.+.
T Consensus 133 ~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRK 149 (475)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 55666666666666644
No 353
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=58.06 E-value=1.7e+02 Score=27.64 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=41.9
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 71 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
.++.+..+...|+.+|+..+ .+.+++... .+++..++|.|+..=. + +.+...++..|.+++-
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 45678888888888777665 344443321 1344567777665532 3 8999999999999987
No 354
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.33 E-value=5.3e+02 Score=33.76 Aligned_cols=322 Identities=13% Similarity=0.080 Sum_probs=146.4
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC------ChhH--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASG------TSEH--TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~------~~~~--~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 187 (541)
-.++.|+..+...+ +.+...+..++..+... +++. +..+. .++++.++++..++...-+...+..|..+.
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~-~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMF-EYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchH-HHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 35788888888777 77777777666665431 1111 11111 134455555555554444444555555555
Q ss_pred CCChhhHHHHH--hcCChHHHHHhhcCCC------hhhHHHHHHHHHHhhhcCC---CCCChhhhhchHHHHHHhhccCC
Q 009184 188 GDSPRCRDLVL--SQGGLVPLLAQLNGQP------KLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSND 256 (541)
Q Consensus 188 ~~~~~~r~~i~--~~g~i~~Ll~~l~~~~------~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~L~~lL~~~d 256 (541)
.+.+ ...+. ...++.++.-.+.... ........+.-+...+... +..........+..++.-|.+++
T Consensus 1062 ~~~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN 1139 (3550)
T KOG0889|consen 1062 ESMP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN 1139 (3550)
T ss_pred hhch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc
Confidence 4444 11111 2224455555443211 1112222222222222212 12222334667777888888888
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHh--Cc--HHHHHHhhCCCChhhHHHHHHHHhHhhcCCch-------hHHHHH-
Q 009184 257 DEVLTDACWALSYLSDGTNDKIQAVIEA--GV--FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-------QTQCVI- 324 (541)
Q Consensus 257 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~--l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-------~~~~~~- 324 (541)
..|+..+..+|.+++.........+.+. .+ .+.+...+....-..+.-.+.++..++.-.+. ......
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence 9999999999988875542111111111 11 11111112222223333333333333332221 110000
Q ss_pred -h-------cCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC
Q 009184 325 -E-------YQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA 393 (541)
Q Consensus 325 -~-------~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~ 393 (541)
. ....- +.+...... .-..|..+..+++......+....+ + .-...+++..++..+.+.
T Consensus 1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~--------~-~~~r~kii~v~fk~l~~~ 1289 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQ--------H-AELREKIIAVFFKSLYKR 1289 (3550)
T ss_pred HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchh--------h-hhhhhHHHHHHHHHHcCC
Confidence 0 00000 111111110 1134555666666555432221110 0 112346778888888888
Q ss_pred chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 394 EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 394 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
.+++...+..++.+.... ++..-+.+++.+ +.+|...+.+... .....+..+..+...
T Consensus 1290 ~~Ei~~~~~~~l~~v~~~-~~~~~ke~lq~~-lrplL~~l~d~~~-lsv~~l~~ls~l~~l 1347 (3550)
T KOG0889|consen 1290 SSELIEVALEGLRKVLAQ-DVKLPKELLQSH-LRPLLMNLSDHNN-LSVPGLEGLSRLLRL 1347 (3550)
T ss_pred hHHHHHHHHHHHHhhhhc-cccccHHHHHhh-HHHHHHhhhHhhh-hhHHHHHHHHHHHHH
Confidence 899999999999888764 233333334433 3344443332222 333444555555443
No 355
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=57.14 E-value=2.5e+02 Score=29.38 Aligned_cols=149 Identities=13% Similarity=0.016 Sum_probs=86.3
Q ss_pred chhHHHHHHHHH---HHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHH----HhhcCchhHHHHHHHHHHHhccCC
Q 009184 341 KKSIKKEACWTV---SNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVA----LLENAEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 341 ~~~v~~~a~~~L---~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~----~l~~~~~~v~~~a~~aL~nl~~~~ 412 (541)
..+++..+...+ .....+ .+..+..+ ...+..++.|.+-. --...+...|..+..+|+.++...
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l--------~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~ 405 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQILKLL--------RPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA 405 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHHHHH--------HHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC
Confidence 346666666666 555443 23332200 03444555555510 112346789999999999999854
Q ss_pred CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHH-HHHHHhcCCCH
Q 009184 413 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE-KIESLQTHDNA 491 (541)
Q Consensus 413 ~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~L~~~~~~ 491 (541)
..-. .-+-+++..|.+-|+.++++++..+-++|..++........ + ........+. .+.....+...
T Consensus 406 p~l~---~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~------~---~~~~~~~~~~~l~~~~~~~~~~ 473 (501)
T PF13001_consen 406 PSLF---SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD------D---EDEQKRLLLELLLLSYIQSEVR 473 (501)
T ss_pred cccc---cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc------c---hhHHHHHHHHHHHHhhccchhH
Confidence 2211 11346788888888888999999999999999875543221 0 0000000011 11222345566
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 009184 492 EIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 492 ~i~~~a~~il~~~~~~~~ 509 (541)
..+..|.+-.+++|+.++
T Consensus 474 ~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 474 SCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHHHHHHhCCccc
Confidence 678888888888887654
No 356
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.71 E-value=3.5e+02 Score=30.87 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=54.1
Q ss_pred HHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC---CCChHHHHHHHHHHHHH
Q 009184 376 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLENI 451 (541)
Q Consensus 376 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---~~~~~~~~~~l~~L~~l 451 (541)
.+..+|++..|++.+-..-++.+.+-+..+..++.. ++.....+-..|+++.|.+++. +....+...++.++..+
T Consensus 903 ~iynagavRvlirslLlnypK~qlefl~lleSlaRa-spfnaelltS~gcvellleIiypflsgsspfLshalkIvemL 980 (2799)
T KOG1788|consen 903 KIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARA-SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEML 980 (2799)
T ss_pred hhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc-CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHH
Confidence 577899999999988888889999999999888875 4455556566788888777664 23344555555555444
No 357
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=56.21 E-value=1.5e+02 Score=26.54 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=85.9
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHHH
Q 009184 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQA-VWALGNIAGDSPRCRDL 196 (541)
Q Consensus 119 ~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~r~~ 196 (541)
..+..++.++. .+.+..|+.++.......... .++.+-.++.. ++..+.+.. ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 44556677777 888888887776543311111 24555666655 677777765 44445442111
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 276 (541)
....+.+...+ .++++-.++.++-++...... .....++..+...+.+++.-|+..+.|+|..++..+++
T Consensus 119 ---~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ---PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ---GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ---HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 11334444455 677777787777666555444 23345566666677788889999999999999988777
Q ss_pred HHHHHHHh
Q 009184 277 KIQAVIEA 284 (541)
Q Consensus 277 ~~~~~~~~ 284 (541)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 358
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=56.20 E-value=76 Score=25.07 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=54.1
Q ss_pred CchHHHHHhhcC---CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--CchhHHHHH
Q 009184 327 QALPCLLNLLSG---NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AEFDIKKEA 401 (541)
Q Consensus 327 ~~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a 401 (541)
|++..+-..+.+ ..+...|+.+...++.+..-....+. .+.|.+...|.+ ..++++..|
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~----------------~~~pQI~a~L~sal~~~~l~~~a 74 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS----------------SARPQIMACLQSALEIPELREEA 74 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH----------------HHHHHHHHHHHHHhCChhhHHHH
Confidence 455556666655 33667889999999999874344443 355666666665 346899999
Q ss_pred HHHHHHhccCCCHHHHHHHHH
Q 009184 402 AWAISNATSGGTHEQIKFLVI 422 (541)
Q Consensus 402 ~~aL~nl~~~~~~~~~~~l~~ 422 (541)
+.+...++..-+.+....+++
T Consensus 75 l~~W~~fi~~L~~~~l~~ll~ 95 (107)
T PF08064_consen 75 LSCWNCFIKTLDEEDLGPLLD 95 (107)
T ss_pred HHHHHHHHHHCCHHHHHHHHH
Confidence 999988887666666555543
No 359
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=56.06 E-value=85 Score=26.51 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=80.7
Q ss_pred ChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC--CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHH
Q 009184 148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAG--DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (541)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~--~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~ 224 (541)
+++.-+.+.+...+..+++++.. ....++.+.+.+++-+.. .++..-..+++.+.+..++..--+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 35667778888899999999987 667788888888776653 222233355677777777766545668888888888
Q ss_pred HHHhhhcCCCCCChh--h-----hhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 009184 225 TLSNFCRGKPQPPFD--Q-----VSPALPALAHLIHSNDDEVLTDACWALSYL 270 (541)
Q Consensus 225 ~L~~l~~~~~~~~~~--~-----~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 270 (541)
.|..++-.-...... . .-++...-+++..++|.-++..+-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 888887554222211 1 133444556667777777776665554443
No 360
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=55.91 E-value=1e+02 Score=24.53 Aligned_cols=69 Identities=7% Similarity=-0.010 Sum_probs=50.7
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhh-----c-CCCChHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDL-----L-VCPDPRIVTVCLEGLEN 450 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l-----L-~~~~~~~~~~~l~~L~~ 450 (541)
++..|..-+.+.++.++..|+..|-.++.++.......+.....+..++.+ . ...+..++..++..+..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 566777778888999999999999999998888887777776666665442 1 12355677777766654
No 361
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=55.83 E-value=1.5e+02 Score=26.50 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=82.1
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHH-HHHHhHhhcCCchhHHH
Q 009184 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPA-LRTVGNIVTGDDMQTQC 322 (541)
Q Consensus 245 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~a-l~~L~nl~~~~~~~~~~ 322 (541)
...+..+..++..+.+.-++..+.......+. ..++.+-..+.. +++.+.... ..+++.+....
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34455566667777766666666543321111 134455555544 566666665 34455543211
Q ss_pred HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHH
Q 009184 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAA 402 (541)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 402 (541)
....+.+...+.++ ++-++..++-++...... .... .++..+...+.+++..|++.+.
T Consensus 119 ---~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~--~~~~----------------~~l~~~~~~~~d~~~~vq~ai~ 176 (213)
T PF08713_consen 119 ---PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRK--EDFD----------------ELLEIIEALLKDEEYYVQKAIG 176 (213)
T ss_dssp ---GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGG--CHHH----------------HHHHHHHHCTTGS-HHHHHHHH
T ss_pred ---HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHh--cCHH----------------HHHHHHHHHcCCchHHHHHHHH
Confidence 34566788888888 888888887666555443 1111 1334455556778899999999
Q ss_pred HHHHHhccCCCHHHHHHHH
Q 009184 403 WAISNATSGGTHEQIKFLV 421 (541)
Q Consensus 403 ~aL~nl~~~~~~~~~~~l~ 421 (541)
|+|..+... +++.....+
T Consensus 177 w~L~~~~~~-~~~~v~~~l 194 (213)
T PF08713_consen 177 WALREIGKK-DPDEVLEFL 194 (213)
T ss_dssp HHHHHHCTT--HHHHHHHH
T ss_pred HHHHHHHHh-CHHHHHHHH
Confidence 999999886 444444333
No 362
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.85 E-value=4.4e+02 Score=31.18 Aligned_cols=257 Identities=11% Similarity=0.092 Sum_probs=128.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHH-HHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~L-v~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
.+..+++.|...|+.++..|+..+..+....+.+...-+ .+..+.+ .+++.+++ ..+|...-.++..+...-....
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~i--l~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGI--LPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhh--HHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHh
Confidence 567888899999999999999999999764322221111 1112333 34555566 9999999999999887422221
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHhhcC------------------
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNG------------------ 212 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~i~~Ll~~l~~------------------ 212 (541)
...+. ..+|..+-.-.+.+..+...|...+..... ....+....-.+ ....+.+.+..
T Consensus 119 sp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~-~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E 196 (1312)
T KOG0803|consen 119 SPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFA-EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELE 196 (1312)
T ss_pred hHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcC-hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHH
Confidence 22221 234444333344555566666555555443 211222222111 11112222110
Q ss_pred CChhhHHHHHHHHHHhhhcCC-CCCChh----hhhc--hHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184 213 QPKLSMLRNATWTLSNFCRGK-PQPPFD----QVSP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (541)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~-~~~~~~----~~~~--~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 285 (541)
.....+...++-++..+.... +..... .... .-..+.+++.+..+.+......++..+++.-..... -.+..
T Consensus 197 ~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~-~~~~~ 275 (1312)
T KOG0803|consen 197 SKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVM-ESEKN 275 (1312)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcc-hhhhh
Confidence 011234444555555554322 111111 1111 223566777888888888888888888765443311 12223
Q ss_pred cHHHHHHh-hCCCChhhHHHHHHHHhH-hhcCCchhHHH--HHhcCchHHHHHhhc
Q 009184 286 VFPRLAEF-LMHPSPSVLIPALRTVGN-IVTGDDMQTQC--VIEYQALPCLLNLLS 337 (541)
Q Consensus 286 ~l~~L~~l-L~~~~~~v~~~al~~L~n-l~~~~~~~~~~--~~~~~~l~~L~~lL~ 337 (541)
.+...+.. ..+.+ .+.......+.+ +....+..... ....++++.+..++.
T Consensus 276 ~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 276 YLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred HhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 33333333 33333 334444444442 22223322222 245677888877777
No 363
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=53.84 E-value=2e+02 Score=33.29 Aligned_cols=182 Identities=11% Similarity=0.068 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009184 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (541)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~ 295 (541)
..+++.++|+|..+..+-. .......+..+..++..+..+++.-.+..+.+......+... ..-..+++.+...|.
T Consensus 143 apVre~caq~L~~~l~~~~---~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMD---ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhh---hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Confidence 4678889999988887631 233456677788888877777777766666554321111111 111145667777788
Q ss_pred CCChhhHHHHHHHHhHhhcCCchh-HHHHHhcCchHHHHHhhcCCCch--hHHHHHHHHHHHHhcCChHHHHHHHhhchh
Q 009184 296 HPSPSVLIPALRTVGNIVTGDDMQ-TQCVIEYQALPCLLNLLSGNYKK--SIKKEACWTVSNITAGNREQIQVIMHVHAF 372 (541)
Q Consensus 296 ~~~~~v~~~al~~L~nl~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~ 372 (541)
+.+..++..|...+.-+++.-... .+.+ ..++..+...+..- +. .-.......+..++... .+.++..
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~l-ddl~~s~~si~~ll~~l~~~~--evl~l~~---- 289 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLEL-DDLSSSTASIMHLLDELCIEN--EVLDLFE---- 289 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHh-hhcchhhHHHHHHHHHHhhhH--HHHHHHH----
Confidence 888888888888877666533211 1111 12233333333222 11 00111122233333221 1220000
Q ss_pred hHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184 373 SIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 373 ~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 412 (541)
. .-.+.|++|.+...+.+.=..++..++..+..+....
T Consensus 290 -~-~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 290 -Q-QNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred -H-hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 1113588888888888776778888888888877643
No 364
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=53.11 E-value=15 Score=28.94 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHH
Q 009184 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177 (541)
Q Consensus 135 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~ 177 (541)
...+..+..++. .|+.-..+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 445666777776 588888899999999999999998877643
No 365
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.03 E-value=1.4e+02 Score=29.62 Aligned_cols=133 Identities=11% Similarity=0.127 Sum_probs=86.0
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHH
Q 009184 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQ 364 (541)
Q Consensus 286 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~ 364 (541)
-+..|+.-+++.+..++..|+.-|..+....+.... .--..+++.+..+..+. +..+|.....++-.+... .++...
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 356678888999999999999999888766443321 11235677788888877 888998888888876552 222222
Q ss_pred HHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC
Q 009184 365 VIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 434 (541)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 434 (541)
..-.=+++.+...|.+-.++++.-++..+.-++....+....+... .++.+.++++
T Consensus 137 ------------p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~ 192 (393)
T KOG2149|consen 137 ------------PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVIS 192 (393)
T ss_pred ------------chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHH
Confidence 1111244555556666678888888888888877554544444333 4444444443
No 366
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=51.93 E-value=59 Score=31.81 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=41.6
Q ss_pred cHHHHHhcC--CHHHHHHhhcCCC--cHHHHHHHHHHHHHHhcCChhHHHHH------HhCCChHHHHH
Q 009184 108 PIEEVIRSG--VVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVV------IDHGAVPIFVK 166 (541)
Q Consensus 108 ~~~~~i~~g--~i~~Lv~lL~~~~--~~~i~~~a~~~L~~l~~~~~~~~~~i------~~~g~i~~L~~ 166 (541)
....++..+ ++..|++++..++ ...++..|+.+|..|+.......+.+ +..|+++.+++
T Consensus 255 ~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR 323 (329)
T PF06012_consen 255 FSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLR 323 (329)
T ss_pred HHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHH
Confidence 345566555 9999999998764 47899999999999999665554433 23456665554
No 367
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=50.45 E-value=2.7e+02 Score=27.71 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh
Q 009184 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI 252 (541)
Q Consensus 173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL 252 (541)
..-++.|...+.+...+-|...+. ++..-+.+. .+.+..+++.|..-|-.+|.+. ....+.+.|+++|
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQLL 105 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHHH
Confidence 334556667777776665543333 455555665 6777888888888888888773 2223333344333
Q ss_pred c------------cCChhHHHHHHHHHHH-hccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 009184 253 H------------SNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 253 ~------------~~d~~v~~~a~~~L~~-l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 315 (541)
. ..|..+++.++.-|.. +..-..+....-++..++..+-..|.+-...-....+..|+++...
T Consensus 106 nk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~ 181 (460)
T KOG2213|consen 106 NKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSL 181 (460)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 2 2355666666555532 3333333333334444555555555554444444555556665543
No 368
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.08 E-value=3.8e+02 Score=29.32 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=62.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhh
Q 009184 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (541)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 240 (541)
|..|..+-..+-+.++.+++.++.++....|+-- ...+..+++.| .+++..+...|.+.|.+|....|+....+
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 4444444445667888888888888887777632 22455677777 66777788888888888887767665544
Q ss_pred hhchHHHHHHhhccC--ChhHHHHHHHHHHHh
Q 009184 241 VSPALPALAHLIHSN--DDEVLTDACWALSYL 270 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l 270 (541)
+. .+..++-.+ +.....+++..|..+
T Consensus 380 i~----EIer~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 380 ID----EIERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred HH----HHHHHHcccCccccceeehhhhhhhh
Confidence 33 333333322 333445555555544
No 369
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.90 E-value=74 Score=32.63 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=68.1
Q ss_pred hhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchh
Q 009184 390 LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF 469 (541)
Q Consensus 390 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 469 (541)
|..+|+.+-.+.|..|..--. +.. .++..|..-+.+.++.+...+|..|..+++-+... |
T Consensus 14 l~~pDWa~NleIcD~IN~~~~-~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~----------f 73 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTEG-GPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS----------F 73 (470)
T ss_pred ccCccHHHHHHHHHHHhcCcc-CcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH----------H
Confidence 334566666666655543322 222 35667777788888888889999888888765443 5
Q ss_pred hhHhhhcchHHHHHHH-hcC-CCHHHHHHHHHHHHHhCCCCC
Q 009184 470 TQMIDDAEGLEKIESL-QTH-DNAEIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 470 ~~~i~~~~~~~~l~~L-~~~-~~~~i~~~a~~il~~~~~~~~ 509 (541)
...|.+.+++..+..+ .++ .+..|++++..+|+.|...-.
T Consensus 74 h~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 74 HLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 6567777777776555 456 788999999999999865444
No 370
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=49.79 E-value=19 Score=28.38 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHH
Q 009184 399 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 442 (541)
Q Consensus 399 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~ 442 (541)
.+.+..+..++. .|+....+++.|++..|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345566666666 678899999999999999999999887654
No 371
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=49.50 E-value=1.4e+02 Score=24.08 Aligned_cols=68 Identities=25% Similarity=0.286 Sum_probs=47.5
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhH-HHHHHHHHHhhhcCC
Q 009184 160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-LRNATWTLSNFCRGK 233 (541)
Q Consensus 160 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~-~~~a~~~L~~l~~~~ 233 (541)
++|.+...|. +..++.+-.+...++.++...+ ..+. .+..+++.+........ .+.++-++..+++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4688888888 6788999999999999986665 2233 34555555434333333 478888888888765
No 372
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=48.77 E-value=1.1e+02 Score=30.05 Aligned_cols=77 Identities=29% Similarity=0.420 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHHHH------hc
Q 009184 132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYSP---SDDVREQAVWALGNIAGDSPRCRDLVL------SQ 200 (541)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~r~~i~------~~ 200 (541)
.++..|+.++..+.. .+.....++..+ ++..|+.+++.+ ...++..|+.+|..|+.+...+.+.+. ..
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 445555555555554 456666666665 888999998763 478999999999999988776655543 34
Q ss_pred CChHHHHHh
Q 009184 201 GGLVPLLAQ 209 (541)
Q Consensus 201 g~i~~Ll~~ 209 (541)
|++..+++.
T Consensus 316 GiL~~llR~ 324 (329)
T PF06012_consen 316 GILPQLLRK 324 (329)
T ss_pred ccHHHHHHH
Confidence 455555543
No 373
>PLN03205 ATR interacting protein; Provisional
Probab=48.42 E-value=2.9e+02 Score=27.50 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=94.5
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHH---HHHHhh-CCCChhhHHHHHHHHhHhh
Q 009184 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFP---RLAEFL-MHPSPSVLIPALRTVGNIV 313 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~l~---~L~~lL-~~~~~~v~~~al~~L~nl~ 313 (541)
...++.+|+.+..-++..+...+++.|..+.. ++..+...-.+.+.+. .+.++- .+....++..|+.++.-+.
T Consensus 321 lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 321 LKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 35566667777666666677777776655432 2222333333333322 222221 3456678888988887777
Q ss_pred cCCchh--HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhh----------chh---hHHHHH
Q 009184 314 TGDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV----------HAF---SIIAVI 378 (541)
Q Consensus 314 ~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~----------~~~---~~~~l~ 378 (541)
...+.+ ++.+....+++.+..+|+......|+++|...|--+... +.... +++. ++- +.+..-
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~-iFcSg~~e~~~ad~eNd~~~n~st~k 478 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYD-RFDSLHEEKNSSDTENDSEGNFFALE 478 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHH-HHhcCCccccccccccccccccccHH
Confidence 655543 334445567888999998765778999998665544321 22111 1110 000 000000
Q ss_pred -hcCcHHHHHHHhhc-----CchhHHHHHHHHHHHhccCCC
Q 009184 379 -EANIIGPLVALLEN-----AEFDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 379 -~~~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~~ 413 (541)
-..++.-|-+.+.. .+.++++.++..|.-++..|.
T Consensus 479 ~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 479 AFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 00133444444433 367888999999988887764
No 374
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=47.32 E-value=1e+02 Score=23.20 Aligned_cols=67 Identities=12% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHH---HHHhcCCCHHHHHH
Q 009184 421 VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI---ESLQTHDNAEIYEK 496 (541)
Q Consensus 421 ~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l---~~L~~~~~~~i~~~ 496 (541)
.+..++.++..++. ..+.+++..+++++..++...... + ..|....+ .....++++.+...
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~--------------i-~SGW~~if~il~~aa~~~~e~lv~~ 78 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN--------------I-KSGWKVIFSILRAAAKDNDESLVRL 78 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH--------------H-HhccHHHHHHHHHHHhCCCccHHHH
Confidence 34567888888854 467899999999999999753221 1 24443333 33346678889899
Q ss_pred HHHHHH
Q 009184 497 SVKLLE 502 (541)
Q Consensus 497 a~~il~ 502 (541)
|.++++
T Consensus 79 af~~~~ 84 (86)
T PF09324_consen 79 AFQIVQ 84 (86)
T ss_pred HHHHHh
Confidence 888875
No 375
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=46.23 E-value=4.2e+02 Score=28.78 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=29.1
Q ss_pred CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184 189 DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 189 ~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 230 (541)
..|.+|..+...|.+..+++.|.++........+..+|..|.
T Consensus 363 ~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylL 404 (865)
T KOG2152|consen 363 VMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLL 404 (865)
T ss_pred cChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 456799999999999999999866554444444444444443
No 376
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=46.15 E-value=51 Score=32.35 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=60.5
Q ss_pred CChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc-CCCHHHHHHHHHHHH
Q 009184 424 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLE 502 (541)
Q Consensus 424 ~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~-~~~~~i~~~a~~il~ 502 (541)
.+++.|..=|+..|+.|+..+|..+..+...+.+. |+..+...++...+..|.. +..+.|+++-..++.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~ 114 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVK 114 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 46788888899999999999998888887655432 5666666778888888876 889999999999998
Q ss_pred HhCCCCCC
Q 009184 503 TYWLDDED 510 (541)
Q Consensus 503 ~~~~~~~~ 510 (541)
+|-++-..
T Consensus 115 eWsee~K~ 122 (462)
T KOG2199|consen 115 EWSEEFKK 122 (462)
T ss_pred HHHHHhcc
Confidence 88764333
No 377
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.00 E-value=3.7e+02 Score=28.08 Aligned_cols=94 Identities=14% Similarity=0.206 Sum_probs=61.9
Q ss_pred hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc
Q 009184 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA 380 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (541)
+...|+.-+.-++.+.+-..+.+ +..+-.++..+ ++.+|+..-.+.+-+...+| ++.
T Consensus 620 ie~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg-~~hiR~~~PLa~gils~SnP-Qm~---------------- 676 (881)
T COG5110 620 IESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNP-QMN---------------- 676 (881)
T ss_pred HHHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCc-chH----------------
Confidence 34444444455555665444433 33456667777 88899888777777766444 443
Q ss_pred CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHH
Q 009184 381 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 418 (541)
Q Consensus 381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 418 (541)
++..|-+....++.++...++.+++-+-.+.....+.
T Consensus 677 -vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRla 713 (881)
T COG5110 677 -VFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLA 713 (881)
T ss_pred -HHHHHHHhccccchhHHHHHHHHhhccccCcchHHHH
Confidence 5677888888889999999999998877654444433
No 378
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=45.89 E-value=63 Score=27.23 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184 383 IGPLVALLENAEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 383 l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 411 (541)
+..|+++|.+.+..+...|+.+|.+.+..
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 56799999999999999999999987653
No 379
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.41 E-value=31 Score=33.33 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCChhHHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 009184 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (541)
Q Consensus 137 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 199 (541)
..+.+++++...++..+.+.+.|+++.++.-. ++.+|-+++..+.|+.++..+..+.++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 56789999999999999999999999887643 4578999999999999999888877666543
No 380
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=45.15 E-value=3.3e+02 Score=27.27 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=93.0
Q ss_pred HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhh
Q 009184 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIA 187 (541)
Q Consensus 109 ~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~ 187 (541)
....++..++-.|++++.+.+ |.-+...-.+|.+|.......+..+.. ++=..+.+++.... -.-....+..||.+.
T Consensus 170 aK~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyEte~hnGIaELLEIlgSiI 247 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYETERHNGIAELLEILGSII 247 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcccccccCCHHHHHHHHHHhc
Confidence 456778888999999999998 898888888888887755556555443 33345556665421 111223455566655
Q ss_pred CCCh-hhHHHHHhcCChHHHHHhhcCCCh-hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc--cCChhH----
Q 009184 188 GDSP-RCRDLVLSQGGLVPLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--SNDDEV---- 259 (541)
Q Consensus 188 ~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v---- 259 (541)
..-. +.++... .-.+..|+.+- +... .-......+++..+.+.++..... ++..|++.-- ....+|
T Consensus 248 ngfAlPlKEEhk-iFL~rvLipLh-k~k~l~~yh~QLaYcivQfveKd~kl~~~----VIrglLK~WP~tnS~KEVmFL~ 321 (457)
T KOG2085|consen 248 NGFALPLKEEHK-LFLVRVLIPLH-KPKSLSLYHKQLAYCIVQFVEKDPKLTET----VIRGLLKYWPKTNSSKEVMFLN 321 (457)
T ss_pred CcccCcchhHHH-HHHHHhhhccc-cCCCccccccccceeeeeeeccCccccHH----HHHHHHHhcCCCCCcceeeeHh
Confidence 3221 1111100 00122233332 1111 112233444555555444332222 2222222211 111111
Q ss_pred -HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184 260 -LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (541)
Q Consensus 260 -~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 310 (541)
.++.+.++ .+...+. +...+...+...+++++-.+.+.|+....
T Consensus 322 ElEEILe~i------ep~eFqk-~~~PLf~qia~c~sS~HFQVAEraL~~wn 366 (457)
T KOG2085|consen 322 ELEEILEVI------EPSEFQK-IMVPLFRQIARCVSSPHFQVAERALYLWN 366 (457)
T ss_pred hHHHHHHhc------CHHHHHH-HhHHHHHHHHHHcCChhHHHHHHHHHHHh
Confidence 22322222 2222222 22246667777888888889999887764
No 381
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=44.45 E-value=1e+02 Score=21.32 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=35.5
Q ss_pred hhhHhhhcchHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCCCC
Q 009184 469 FTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDEDE 511 (541)
Q Consensus 469 ~~~~i~~~~~~~~l~~L~-~~~~~~i~~~a~~il~~~~~~~~~~ 511 (541)
.+..+.+.|+...|..+. ..++++|.+.+..+++-...+|.++
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~ 54 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEE 54 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 477888899999999885 5578999999999999887766554
No 382
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=44.01 E-value=1.3e+02 Score=29.81 Aligned_cols=73 Identities=7% Similarity=0.050 Sum_probs=56.9
Q ss_pred CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHH
Q 009184 381 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~ 453 (541)
..+..|.+-|...++.|...|+..+..++.++.......+....+...|..++. ...+.+....-..+....+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 456678888999999999999999999998887777778788888888888888 5566666655544444443
No 383
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.45 E-value=2.5e+02 Score=33.30 Aligned_cols=200 Identities=15% Similarity=0.057 Sum_probs=105.4
Q ss_pred HH-HHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHH
Q 009184 109 IE-EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWAL 183 (541)
Q Consensus 109 ~~-~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L 183 (541)
++ .+++.|.+-.+..-+++.+ +.++..|.|++...-.+-..........-.+-.++.+.++ +++.+-..+.-
T Consensus 1431 ~r~~fvs~~lLa~~F~~lSS~D-~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~al-- 1507 (1758)
T KOG1791|consen 1431 IRLIFVSRGLLALLFKGLSSDD-PSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICAL-- 1507 (1758)
T ss_pred cchhhhhcccHHHHhhhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHH--
Confidence 44 6778898888888888888 9999999888877665322211222221122333333322 12222111111
Q ss_pred HHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH-HHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhH---
Q 009184 184 GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA-TWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV--- 259 (541)
Q Consensus 184 ~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a-~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v--- 259 (541)
++.....++ ..+...+.... .|.+. . + ...-..+|.+..++.+...+-
T Consensus 1508 ------------------F~A~~~~il-l~Ps~~ly~~In~~L~~----s-~----~vdlq~iP~F~~ffySs~~e~~t~ 1559 (1758)
T KOG1791|consen 1508 ------------------FIAFFSDIL-LVPSEGLYFPINGLLLS----S-K----IVDLQGIPIFHRFFYSSVFEHHTE 1559 (1758)
T ss_pred ------------------HHHHHHHHH-cCCccccchhHHHHHHh----h-h----hcccCCCccHHHHHHhccccccch
Confidence 111111222 11111111111 11111 0 0 111334556666666554443
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhc
Q 009184 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (541)
Q Consensus 260 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 337 (541)
+......++.....+++ .+.....+.+..++....++ +...+.-.+.+|++-+.........+-..|+...+..++.
T Consensus 1560 R~Wvl~LV~~glks~~D-~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~ 1638 (1758)
T KOG1791|consen 1560 REWVLELVSKGLKSCPD-YQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIP 1638 (1758)
T ss_pred hhhhHHHHHHHhcCchh-hhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcc
Confidence 33333333333333333 45566667778888877664 3344556778888887776666666778899999999998
Q ss_pred CCC
Q 009184 338 GNY 340 (541)
Q Consensus 338 ~~~ 340 (541)
++.
T Consensus 1639 s~~ 1641 (1758)
T KOG1791|consen 1639 SSF 1641 (1758)
T ss_pred ccc
Confidence 774
No 384
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.96 E-value=63 Score=35.73 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=68.0
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhc----cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184 241 VSPALPALAHLIHSNDDEVLTDACWALSYLS----DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~----~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 316 (541)
+..++....++|.+.+-.++..++.++.... ...+.... ++. ..-+.++..+...++-+...|+.+|-+++...
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 3556666778888889999999998887543 33333222 222 46788889999999999999999999999877
Q ss_pred chhHHHHHhcCchHHHHHhhcC
Q 009184 317 DMQTQCVIEYQALPCLLNLLSG 338 (541)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~ 338 (541)
......=+-..++|.+-.++..
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 7655443334566666665543
No 385
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=42.45 E-value=98 Score=30.78 Aligned_cols=84 Identities=18% Similarity=0.060 Sum_probs=53.0
Q ss_pred hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (541)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 228 (541)
+...+..++...+-.|+.+..++++.-|+..-.+|.+|.+.-..+|..+.. +.-..+++.+..+..-.=....+.+|+.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcccccccCCHHHHHHHHHH
Confidence 455566677788899999999999999999888898887655545554432 2333444444222222223444555555
Q ss_pred hhcCC
Q 009184 229 FCRGK 233 (541)
Q Consensus 229 l~~~~ 233 (541)
+..+.
T Consensus 246 iIngf 250 (457)
T KOG2085|consen 246 IINGF 250 (457)
T ss_pred hcCcc
Confidence 55554
No 386
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=42.13 E-value=1.8e+02 Score=23.36 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=42.3
Q ss_pred cHHHHHHhhC-CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhH-HHHHHHHHHHHhc
Q 009184 286 VFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI-KKEACWTVSNITA 357 (541)
Q Consensus 286 ~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~ 357 (541)
++|.+...|. ...++.+..++.+++.++...+=. ..++..++..+-....... .+.+..++..++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~------~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS------DEVLNALMESILKNWTQETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc------HHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 5677777787 667899999999999998754422 2233344433322213322 4788888888875
No 387
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=40.23 E-value=2.2e+02 Score=23.81 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=53.8
Q ss_pred cHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHH-HhhhcCC---CChHHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP-LCDLLVC---PDPRIVTVCLEGLENILK 453 (541)
Q Consensus 382 ~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~-L~~lL~~---~~~~~~~~~l~~L~~l~~ 453 (541)
++..|..-+.+ .++.++..|+..|-.++.++.......+...+.+.. |+.++.. .+..+...++..+.....
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 44556666664 588899999999999998888788788888899987 8998863 234677777776666553
No 388
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.20 E-value=5.1e+02 Score=27.97 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=123.8
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 74 ~l~~l~~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
.++.+.+.|. +.|+..+..|=..|+.+... ++ .+....-++..++.|--+.-|..+|..+.++.. ..
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~l 73 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PL 73 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CC
Confidence 4556666665 67899999999999887532 22 244444556666657778888889988887542 00
Q ss_pred HHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChh--hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHH
Q 009184 153 KVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPR--CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~--~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L 226 (541)
.......+-..++..+.... +-+....+..++.+..-.-- .++...=...+..+.+.+ +..+.+-...++.+|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence 01111122345566665532 33334444445555421110 011111112455566666 444444444555566
Q ss_pred HhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCChhhHHH
Q 009184 227 SNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (541)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~ 304 (541)
..|...-.......-..--..+..-.+.+ =-+|..-+|..|......+- +..+ .|++..++++-- +.-
T Consensus 153 sqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q----~~L~~~vL~L~l------~Cl 222 (1082)
T KOG1410|consen 153 SQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQ----LGLLMQVLKLNL------NCL 222 (1082)
T ss_pred HHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhH----hhHHHHHHHHHh------hhc
Confidence 66654321111000000000011111111 12344445555544442111 1111 122222222210 000
Q ss_pred HHHHHhHhhcC----------CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 305 ALRTVGNIVTG----------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 305 al~~L~nl~~~----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
..-.+|..+.. +...+..+.+...++.+.++..+- .+..-+.|..+|..+++
T Consensus 223 ~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlAS 284 (1082)
T KOG1410|consen 223 NFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLAS 284 (1082)
T ss_pred cccccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHH
Confidence 00111111111 112334556778888899999888 78888999999999986
No 389
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=39.65 E-value=1.1e+02 Score=24.85 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=55.2
Q ss_pred CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc---CCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchh
Q 009184 393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL---VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF 469 (541)
Q Consensus 393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL---~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 469 (541)
++.......+.-|+..+... ..+.. ++..|..-| +..+...+..+|..|..|+..|... +
T Consensus 15 d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------~ 77 (125)
T PF01417_consen 15 DPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------F 77 (125)
T ss_dssp SSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH----------H
T ss_pred CCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH----------H
Confidence 33444555566666666532 33333 345555555 5566788889999999999887664 3
Q ss_pred hhHhhhcchHHHHHHHh---c-C-----CCHHHHHHHHHHHHHhCC
Q 009184 470 TQMIDDAEGLEKIESLQ---T-H-----DNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 470 ~~~i~~~~~~~~l~~L~---~-~-----~~~~i~~~a~~il~~~~~ 506 (541)
...+. .....|..|. . + ....|+++|..|++-.++
T Consensus 78 ~~~~~--~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 78 VDELR--DHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp HHHHH--HTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred HHHHH--HHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 33332 2234444443 2 1 113599999999986654
No 390
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.51 E-value=5.9e+02 Score=28.52 Aligned_cols=39 Identities=26% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
.+.+.+...++.++.++....++.++.++...|+.+.+.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 344456668999999997777889999999999888876
No 391
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=38.60 E-value=93 Score=27.98 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 009184 343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 422 (541)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 422 (541)
.+...++..|..++.++.+... .+.+ -++.++..+.......-..+..++..+..+ +++.+..+.+
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~-----------~l~~--~~~~l~~~~~~~~~~~~~~~~d~l~~i~~d-N~~L~~~i~e 141 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQK-----------YLFK--HLDFLISIFMQLQIGYGLGALDVLTEIFRD-NPELCESISE 141 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH-----------HHHH--HHH-----HHCCCH-TTHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHHhCHHHHH-----------HHHH--HHhHHHHHHHHhhccCCchHHHHHHHHHHC-cHHHHHHhhH
Confidence 5667888999999998877766 4433 122223333222212223456666777664 4455555443
Q ss_pred cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 423 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 423 ~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
. .++.+++++.....+ ...++.|..|...+
T Consensus 142 ~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 142 E-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCN 171 (207)
T ss_dssp ---------------------------------
T ss_pred H-HHHHHHHHHHHcCCC--hHHHHHHhhhcccC
Confidence 3 488888888763332 23466677666554
No 392
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=37.55 E-value=1.7e+02 Score=24.79 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=74.3
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC---hhhhhchHHHHHHh-hccCChhHHHHHHH
Q 009184 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQVSPALPALAHL-IHSNDDEVLTDACW 265 (541)
Q Consensus 190 ~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~l~~L~~l-L~~~d~~v~~~a~~ 265 (541)
++.+-+...+...+..+++++.......++...+.+++-|..+-..+. .....+.+..++.. +.-.++++...=..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 344667778888899999999776778888888888888877653332 22334555554433 23356777777666
Q ss_pred HHHHhcc-CChHHHHHHHHh--CcHHH---HHHhhCCCChhhHHHHHHHHhHh
Q 009184 266 ALSYLSD-GTNDKIQAVIEA--GVFPR---LAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 266 ~L~~l~~-~~~~~~~~~~~~--g~l~~---L~~lL~~~~~~v~~~al~~L~nl 312 (541)
.|..++- -+.+..+.+... +-+|. -+++..+++.-+|.++-.++-|+
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 6666652 223333333332 33444 45556777776666665555444
No 393
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=37.05 E-value=4e+02 Score=25.90 Aligned_cols=137 Identities=10% Similarity=0.120 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhhhchHHHHHH-hhc---c-----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009184 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIH---S-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (541)
Q Consensus 218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~---~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 288 (541)
+++..+..+.......+... ......+|.++. .|. . .++++..-....+..+...-.+....+.+ .++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~-~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE-EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH-HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence 34444555555444432221 233455555554 222 1 24555555555555554433334444554 4667
Q ss_pred HHHHhhCC---CChhhHHHHHHHHhHhhcCCchhHHHH---HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 289 RLAEFLMH---PSPSVLIPALRTVGNIVTGDDMQTQCV---IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 289 ~L~~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~~---~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
..+.++.. .-|+.+..-...|.++...+....-.+ .-..+++.++-.+++. ..++...++.++..+..
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHH
Confidence 77777754 347888888888888876543221111 0013456777778888 89999999999888876
No 394
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=36.71 E-value=37 Score=19.32 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhc
Q 009184 132 QLQFEAAWALTNIAS 146 (541)
Q Consensus 132 ~i~~~a~~~L~~l~~ 146 (541)
.++..|+++|+++..
T Consensus 2 ~vR~~aa~aLg~~~~ 16 (30)
T smart00567 2 LVRHEAAFALGQLGD 16 (30)
T ss_pred HHHHHHHHHHHHcCC
Confidence 578999999999843
No 395
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=36.54 E-value=2.9e+02 Score=24.04 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=72.6
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh-cCChHHHHHH
Q 009184 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT-AGNREQIQVI 366 (541)
Q Consensus 288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~-~~~~~~~~~~ 366 (541)
|.|+..|...+ +.....+.|+.+++.-.... .....|.-+-|.+.+.+. ...-...|..+...+. ....+.+.
T Consensus 6 plLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~-- 79 (174)
T PF04510_consen 6 PLLISCLTMQE--TKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLI-- 79 (174)
T ss_pred HHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHH--
Confidence 56677776544 23444555555554332221 112445555555555443 2222356777777776 33344444
Q ss_pred HhhchhhHHHHHhcCcHHHHHHHhhcCc-hhHH--HHHH-HHHH---HhccCC-CHHHHHHHHHcCChHHHhhhcCCCCh
Q 009184 367 MHVHAFSIIAVIEANIIGPLVALLENAE-FDIK--KEAA-WAIS---NATSGG-THEQIKFLVIQGCIKPLCDLLVCPDP 438 (541)
Q Consensus 367 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~-~~v~--~~a~-~aL~---nl~~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~ 438 (541)
.+++. +++.+.+.|..+. .++. .-|. .+++ .+.... ..+..+.++. .+++.+.++++.+..
T Consensus 80 ---------~~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~-~mv~Sv~elV~~g~E 148 (174)
T PF04510_consen 80 ---------PFMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLP-KMVKSVKELVERGME 148 (174)
T ss_pred ---------HHHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH-HHHHHHHHHHHcccH
Confidence 55553 7777777776652 2332 1121 1112 222211 1222233222 256666666666555
Q ss_pred -HHHHHHHHHHHHHHH
Q 009184 439 -RIVTVCLEGLENILK 453 (541)
Q Consensus 439 -~~~~~~l~~L~~l~~ 453 (541)
.++..++.-+..++.
T Consensus 149 ~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 149 VGFLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 666666666666654
No 396
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=35.70 E-value=1.2e+02 Score=21.83 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=42.0
Q ss_pred HHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009184 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (541)
Q Consensus 222 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 288 (541)
.+|+.+.|--. |.........+...+..-+..-++....+++|.++.+-..+.+..+.+.+...+.
T Consensus 4 il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 4 ILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 34455544422 3332333445555666666666788999999999999888887777666655443
No 397
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=35.43 E-value=4.4e+02 Score=25.81 Aligned_cols=89 Identities=13% Similarity=-0.003 Sum_probs=52.7
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc-CChHHHHH
Q 009184 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD-GTNDKIQA 280 (541)
Q Consensus 202 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~-~~~~~~~~ 280 (541)
++..+..++.+..++......+.++..=+... .......++..+.+-+....+.++..-+.+++.+.. ........
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 56667777767778887777777665443322 112235667788888877777777777777766654 11111111
Q ss_pred HHHhCcHHHHHHhh
Q 009184 281 VIEAGVFPRLAEFL 294 (541)
Q Consensus 281 ~~~~g~l~~L~~lL 294 (541)
+.. .+++.|...+
T Consensus 100 ~~~-~~~~~L~~~~ 112 (339)
T PF12074_consen 100 FAE-PFLPKLLQSL 112 (339)
T ss_pred HHH-HHHHHHHHHH
Confidence 222 4666666666
No 398
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.22 E-value=2.7e+02 Score=23.31 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhh
Q 009184 393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQ 471 (541)
Q Consensus 393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 471 (541)
+|...-.+.|..+.. -..+ +. .++..|..=|. ..++.++..+|..|..+++-+... |..
T Consensus 17 ~dw~~ileicD~In~-~~~~-~k--------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~----------fh~ 76 (141)
T cd03565 17 EDWGLNMEICDIINE-TEDG-PK--------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR----------FHV 76 (141)
T ss_pred cCHHHHHHHHHHHhC-CCCc-HH--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH----------HHH
Confidence 455666666666542 2211 11 24555555455 468888888999999988765432 455
Q ss_pred HhhhcchHHH-HHHHhc---CCCHHHHHHHHHHHHHhCCCC
Q 009184 472 MIDDAEGLEK-IESLQT---HDNAEIYEKSVKLLETYWLDD 508 (541)
Q Consensus 472 ~i~~~~~~~~-l~~L~~---~~~~~i~~~a~~il~~~~~~~ 508 (541)
.+...++++. |..+.. ..+.+|..+...+|..+...-
T Consensus 77 eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 77 LVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 5666677776 666653 245799999999999986543
No 399
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.92 E-value=1.2e+03 Score=30.87 Aligned_cols=281 Identities=7% Similarity=0.021 Sum_probs=127.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCC------CCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER------SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~------~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~ 147 (541)
.++.+++.+...+.+....+..++..+..... ......-+-.++++.+.++--++. +--+...+-.|..+...
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~-wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDST-WYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHh-HHHHcCCCceeeeehhh
Confidence 46777777777777777777777776554310 111111111234444444444333 33333333333333332
Q ss_pred ChhHHHHHHh--CCChHHHHHhhCC---C----CHHHHHHHHHHHHHhh-C--CChhhHHHHHhcCChHHHHHhhcCCCh
Q 009184 148 TSEHTKVVID--HGAVPIFVKLLYS---P----SDDVREQAVWALGNIA-G--DSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (541)
Q Consensus 148 ~~~~~~~i~~--~g~i~~L~~lL~~---~----~~~v~~~a~~~L~nl~-~--~~~~~r~~i~~~g~i~~Ll~~l~~~~~ 215 (541)
.+ ...+.+ ..++..+...+.. + ..+.....+.-+...+ . ..++-+.... .+.+.+++..| .+++
T Consensus 1064 ~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~lv~eL-~npN 1139 (3550)
T KOG0889|consen 1064 MP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSA-MNVFSPLVLEL-FNPN 1139 (3550)
T ss_pred ch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHH-cCCc
Confidence 22 222221 2344444444433 1 1122222222222222 1 1112222222 23567777777 6777
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhhhchHHH-----HHHhhccCChhHHHHHHHHHHHhccCC-------hHHHHHHHH
Q 009184 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPA-----LAHLIHSNDDEVLTDACWALSYLSDGT-------NDKIQAVIE 283 (541)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~-----L~~lL~~~d~~v~~~a~~~L~~l~~~~-------~~~~~~~~~ 283 (541)
..++..+..+|.+++............+.-+. ..+.+..-.-.++.--+.++.++.... .+.......
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence 79999999999888876522211111111111 111122222222222222333222111 111110000
Q ss_pred h---------CcHHHHHHhhCCC----ChhhHHHHHHHHhHhhcCCchhH--HHHHhcCchHHHHHhhcCCCchhHHHHH
Q 009184 284 A---------GVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQT--QCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (541)
Q Consensus 284 ~---------g~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~v~~~a 348 (541)
. ..+. +.+..... ....+..+..+++......+-.. ..-...+++..+.+.|... .+++...+
T Consensus 1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~ 1297 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVA 1297 (3550)
T ss_pred HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHH
Confidence 0 0011 22222111 12346667777666655444321 1223457888888989888 88888888
Q ss_pred HHHHHHHhcCChH
Q 009184 349 CWTVSNITAGNRE 361 (541)
Q Consensus 349 ~~~L~nl~~~~~~ 361 (541)
..++......++.
T Consensus 1298 ~~~l~~v~~~~~~ 1310 (3550)
T KOG0889|consen 1298 LEGLRKVLAQDVK 1310 (3550)
T ss_pred HHHHHhhhhcccc
Confidence 8888888775443
No 400
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=33.87 E-value=2.8e+02 Score=23.17 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=65.0
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCC
Q 009184 385 PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT 464 (541)
Q Consensus 385 ~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 464 (541)
.+++-|......+++.|..||-+ .. .+..+.+.+++-++.++-..+..++..+..|+......+.
T Consensus 12 ~~L~~L~aS~qSi~kaa~fAlk~-~~----------~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~---- 76 (139)
T PF12243_consen 12 QLLRRLNASQQSIQKAAQFALKN-RD----------MEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKK---- 76 (139)
T ss_pred HHHHHcchhHHHHHHHHHHHHHc-cc----------cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc----
Confidence 45555666667888999999988 22 1223567788888888878888889999988876655431
Q ss_pred CcchhhhHhhhcchHHHHHHHhcCCCH--HHHHHHHHHHHHh
Q 009184 465 DVNVFTQMIDDAEGLEKIESLQTHDNA--EIYEKSVKLLETY 504 (541)
Q Consensus 465 ~~~~~~~~i~~~~~~~~l~~L~~~~~~--~i~~~a~~il~~~ 504 (541)
.-.+|...+. .+....+....-.++. .=...+.++|..+
T Consensus 77 ~~~~Yv~~l~-~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~ 117 (139)
T PF12243_consen 77 YNYPYVSMLQ-RDLPRIVDAVAPPDNSGAANLKSVRKVLKNW 117 (139)
T ss_pred ccchhHHHHH-HHHHHHHHHhCCCCCccchHHHHHHHHHHHH
Confidence 1456787776 4444444444333332 2234455555544
No 401
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.61 E-value=6.5e+02 Score=27.24 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=50.0
Q ss_pred HHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHH
Q 009184 419 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 498 (541)
Q Consensus 419 ~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~ 498 (541)
.+.+...+..+.++..+-.+.....++.+|-.+...-....+ +.+-..|...+. .|..+.|++=+.-.++.-|+.--
T Consensus 250 ~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN--~aeRa~yl~~Lv-~Gvk~il~np~~LsD~~nyHeFC 326 (1082)
T KOG1410|consen 250 SFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFN--GAERAKYLQHLV-EGVKRILENPQGLSDPANYHEFC 326 (1082)
T ss_pred HhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHH-HHHHHHHhCCcCCCCcchHHHHH
Confidence 344556677778888887777777777777777654433221 111223444444 45666666666666776666666
Q ss_pred HHHHHhC
Q 009184 499 KLLETYW 505 (541)
Q Consensus 499 ~il~~~~ 505 (541)
.++.++-
T Consensus 327 RllaRlk 333 (1082)
T KOG1410|consen 327 RLLARLK 333 (1082)
T ss_pred HHHHHHH
Confidence 6666654
No 402
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.16 E-value=7.6e+02 Score=27.63 Aligned_cols=192 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred hHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC
Q 009184 161 VPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (541)
Q Consensus 161 i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 235 (541)
+..|-+++...+ ....+.++..+-.++.+....-+..+.. .+......=....++.+...+...+..++.. -.
T Consensus 464 ~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~r-l~~~~asik~S~~n~ql~~Tss~~igs~s~~-l~ 541 (982)
T KOG2022|consen 464 IDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPR-LFETSASIKLSAPNPQLLSTSSDLIGSLSNW-LG 541 (982)
T ss_pred HHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHH-HHHhccccccccCChhHHHHHHHHHHHHHHH-Hh
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHhh
Q 009184 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIV 313 (541)
Q Consensus 236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~ 313 (541)
.........+|.|++-|. +.+....+...+..+|....+......+ +++...-..+...+ +..+...++++|.+.
T Consensus 542 e~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvl 618 (982)
T KOG2022|consen 542 EHPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVL 618 (982)
T ss_pred cCCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHH
Q ss_pred cCCchhHHHHHhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhc
Q 009184 314 TGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITA 357 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~ 357 (541)
+.-...-..-.-..++..++.-++.. ++++-+...+.-+.-++.
T Consensus 619 s~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~ 667 (982)
T KOG2022|consen 619 SRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISA 667 (982)
T ss_pred HhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
No 403
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=31.63 E-value=2.3e+02 Score=24.38 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=51.3
Q ss_pred hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 199 ~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
..+.+...+..+....|..+...++.++.+.... ..........++|.+..+|.+..+.-...++..+..+..
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4445666666665667777777777776654443 234455567889999999999988888888888877654
No 404
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=31.61 E-value=2.5e+02 Score=22.11 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=43.7
Q ss_pred chHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCC
Q 009184 243 PALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGD 316 (541)
Q Consensus 243 ~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~ 316 (541)
|++..+...+.+ .+..-+..++.++..+......... .+.+.++..|+. ..++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 444445555544 3455678888888888764333322 345666666643 34578999999988887654
Q ss_pred c
Q 009184 317 D 317 (541)
Q Consensus 317 ~ 317 (541)
+
T Consensus 86 ~ 86 (107)
T PF08064_consen 86 D 86 (107)
T ss_pred C
Confidence 3
No 405
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.94 E-value=6.4e+02 Score=26.42 Aligned_cols=139 Identities=13% Similarity=0.102 Sum_probs=79.9
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC-------CChhhHHHHHHHHHHhhhcCCCCC
Q 009184 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGKPQP 236 (541)
Q Consensus 164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~-------~~~~~~~~~a~~~L~~l~~~~~~~ 236 (541)
+.+.+-+.++..+..|+..|.. |. .... .++.++..+.. ..+.....+++.+++.|..+....
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T---Ds-GL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET---DS-GLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc---Cc-cHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3334444556666666555532 21 1111 24555555532 245667778888888888876544
Q ss_pred ChhhhhchHHHHHHhhcc----------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHH
Q 009184 237 PFDQVSPALPALAHLIHS----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIP 304 (541)
Q Consensus 237 ~~~~~~~~l~~L~~lL~~----------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~ 304 (541)
-......++|.++.++-+ +...++.-++..+..++..-...... +...++..+.+.+.++ .+....-
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhh
Confidence 445667788887776642 22447777888888888665544332 4446666777766554 3444445
Q ss_pred HHHHHhHhh
Q 009184 305 ALRTVGNIV 313 (541)
Q Consensus 305 al~~L~nl~ 313 (541)
++..|..+.
T Consensus 361 ai~gL~~lg 369 (576)
T KOG2549|consen 361 AIAGLSELG 369 (576)
T ss_pred HHHHHHHhh
Confidence 555555444
No 406
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=30.64 E-value=51 Score=20.91 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=19.5
Q ss_pred CcHHHHHHHhhcCchhHHHHHHHHH
Q 009184 381 NIIGPLVALLENAEFDIKKEAAWAI 405 (541)
Q Consensus 381 ~~l~~L~~~l~~~~~~v~~~a~~aL 405 (541)
.+...+...+.++++.||..|+.+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4666777778888999999887653
No 407
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.48 E-value=9.2e+02 Score=27.75 Aligned_cols=134 Identities=9% Similarity=0.019 Sum_probs=84.7
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHH
Q 009184 341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420 (541)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 420 (541)
.+.+|..+...|+--+..-|. .+++...+..+=-.|++.+..||..++.+|..|.........-.+
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~--------------~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l 365 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPE--------------IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL 365 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccH--------------HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH
Confidence 788999988888877765454 667777888888888888999999999999999875321111122
Q ss_pred HHcCChHHHhhhc-CCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHH
Q 009184 421 VIQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 499 (541)
Q Consensus 421 ~~~~~i~~L~~lL-~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~ 499 (541)
.....=..++++. ..-+..|+...+. ..++... ...+. ..-+..+..|..+.++++...|..
T Consensus 366 FtsRFK~RIVeMadrd~~~~Vrav~L~--~~~~~~~--------------~g~L~-d~di~~Vy~Li~d~~r~~~~aa~~ 428 (1048)
T KOG2011|consen 366 FTSRFKDRIVEMADRDRNVSVRAVGLV--LCLLLSS--------------SGLLS-DKDILIVYSLIYDSNRRVAVAAGE 428 (1048)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHH--HHHHHhc--------------ccccC-hhHHHHHHHHHhccCcchHHHHHH
Confidence 2233445666666 2233444443333 2222211 11222 222457888899999999888877
Q ss_pred HHHHhC
Q 009184 500 LLETYW 505 (541)
Q Consensus 500 il~~~~ 505 (541)
.+..-+
T Consensus 429 fl~~k~ 434 (1048)
T KOG2011|consen 429 FLYKKL 434 (1048)
T ss_pred HHHHHh
Confidence 665533
No 408
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.21 E-value=1.6e+02 Score=30.28 Aligned_cols=69 Identities=9% Similarity=0.011 Sum_probs=52.3
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC--ChHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLEN 450 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l~~L~~ 450 (541)
++..|.+.+.+..+.++..|+..|--++.++.......+.+.+++.-++.+.+.. +.+|+..+|..|..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 4556677777778899999999888888777767767778889999988888765 55677777665543
No 409
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=28.65 E-value=73 Score=20.54 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=11.8
Q ss_pred CCCchHHhhh-hhhHHHHHH
Q 009184 19 AVDADEGRRR-REDNMVEIR 37 (541)
Q Consensus 19 ~~~~~~~r~~-r~~~~~~lR 37 (541)
..|++|+++| |++.-..+|
T Consensus 10 k~DPeE~k~kmR~dvissvr 29 (51)
T PF15178_consen 10 KMDPEEMKRKMREDVISSVR 29 (51)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 5788988874 444444444
No 410
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.32 E-value=2.1e+02 Score=31.94 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=67.9
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhc----CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (541)
.++.+-..+|++++..+|..|+.++..... ..+.. ...-+...+.++..+... ++-+...|+.++-+++..+.
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~L--lPlvhq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLL--LPLVHQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhH--hHHHHhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhh
Confidence 577788888999999999999988765432 22222 222356778888888888 99999999999999998666
Q ss_pred HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
+.+. .-+-..++|.+-.++..
T Consensus 880 DFv~-----------sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVA-----------SRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHH-----------HHHHHHHHHHHHHHHHH
Confidence 6555 43334677777766543
No 411
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=26.49 E-value=3.1e+02 Score=24.54 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=31.5
Q ss_pred hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHh
Q 009184 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIE 379 (541)
Q Consensus 300 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~ 379 (541)
.+...+++.|..++.++......+.++ ++.+...+... ....-..+..++..+..++.+... .+.+
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~-----------~i~e 141 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCE-----------SISE 141 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHH-----------HhhH
Confidence 467788999999999887666555442 34333333332 111223567778888887777766 5544
Q ss_pred cCcHHHHHHHhhc
Q 009184 380 ANIIGPLVALLEN 392 (541)
Q Consensus 380 ~~~l~~L~~~l~~ 392 (541)
.. +..++.++..
T Consensus 142 ~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 142 EH-IEKFIELLRK 153 (207)
T ss_dssp -------------
T ss_pred HH-HHHHHHHHHH
Confidence 33 6777777765
No 412
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.36 E-value=6.1e+02 Score=24.63 Aligned_cols=158 Identities=10% Similarity=0.103 Sum_probs=91.7
Q ss_pred hchHHHHHHhhccC----ChhHHHHHHHHHHHhccCChHHHHHHHHh-----------CcHHHHHHhhC------CCChh
Q 009184 242 SPALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEA-----------GVFPRLAEFLM------HPSPS 300 (541)
Q Consensus 242 ~~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------g~l~~L~~lL~------~~~~~ 300 (541)
.+++..|+.++-.. .-+++..|+.++.....++++....+++. .....|+..|- ..++-
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy 112 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPY 112 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HH
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHH
Confidence 34455555544322 34578888888877776666544444442 01112444443 23444
Q ss_pred hHHHHHHHHhHhhcCCchhHHHHHhc------------CchHHHHHhhcC----CCchhHHHHHHHHHHHHhcCChHHHH
Q 009184 301 VLIPALRTVGNIVTGDDMQTQCVIEY------------QALPCLLNLLSG----NYKKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~~~~~~~~------------~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
-...|+.++..+...++...+.+..- ..++.+..+|.. ..++.++..-+..|+--..+++..+.
T Consensus 113 ~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~ 192 (312)
T PF04869_consen 113 RCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 45678888888888777665554311 235556665544 33677777777777777778888888
Q ss_pred HHHhhchhhHHHHHhc-CcHHHHHHHhhc---CchhHHHHHHHHHHHhcc
Q 009184 365 VIMHVHAFSIIAVIEA-NIIGPLVALLEN---AEFDIKKEAAWAISNATS 410 (541)
Q Consensus 365 ~~~~~~~~~~~~l~~~-~~l~~L~~~l~~---~~~~v~~~a~~aL~nl~~ 410 (541)
.++.. ..++.|+..... .+.-|+--++..|+-+..
T Consensus 193 -----------~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 193 -----------DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -----------HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred -----------HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 88755 588889887533 356677767766666554
No 413
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=26.07 E-value=1.9e+02 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=31.7
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~ 157 (541)
+++.|+.-|.+++ +++...|+.+|...+... .....++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4788999998888 899999999999999864 55555554
No 414
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.50 E-value=2.7e+02 Score=24.46 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
+.+...+.+++.-++..++.++...... ..... ..++.+-.++.+. +..|++...|+|..++...++...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHH
Confidence 5677788888888888887777665543 11111 2344555555556 889999999999999997777655
No 415
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.22 E-value=2e+02 Score=34.42 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=75.2
Q ss_pred HhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCch
Q 009184 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329 (541)
Q Consensus 250 ~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l 329 (541)
.++.+.++.++.-+......+-...+. .....++..|+..+.+++..-...|+.+|..++.......... +..+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l 515 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFL 515 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHH
Confidence 455678888888777776666544432 2234577788888766676667889999999987554333221 2233
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 408 (541)
Q Consensus 330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 408 (541)
..++..+..= +..-.+....+++.++......- .-+...+.-.+-..|.+.+++.++..+-+...+
T Consensus 516 ~giLD~l~~L-s~~qiR~lf~il~~La~~~~~~~------------s~i~del~ivIRKQLss~~~~~K~~GIIGav~~ 581 (1426)
T PF14631_consen 516 KGILDYLDNL-SLQQIRKLFDILCTLAFSDSSSS------------SSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMM 581 (1426)
T ss_dssp HGGGGGGGG---HHHHHHHHHHHHHHHHHHSS---------------HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHhcCCcccc------------hhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Confidence 3344444443 33333455777777775221111 112223333444557777777776655444433
No 416
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=25.00 E-value=3.1e+02 Score=21.72 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=43.5
Q ss_pred CCHHHHHHhhcCCC---cHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009184 116 GVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAG 188 (541)
Q Consensus 116 g~i~~Lv~lL~~~~---~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 188 (541)
|++..+.+.+.+.. +..-+..++.++..+..-...... .+.|.+...|.+ ..++++..|+.+...+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 55666666665543 345678888888877763222211 345666666655 677899999988887763
No 417
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=24.83 E-value=1.7e+02 Score=28.19 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=30.7
Q ss_pred hhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 470 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 470 ~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
...|.+...=..+..|..|++++|...|..||..|-.
T Consensus 37 ~~lL~~T~IG~~Vn~lrkh~~~~I~~lAk~li~~WK~ 73 (299)
T TIGR01385 37 EELLQETKVGVKVNKLRKHPNEDISKLAKKIIKSWKK 73 (299)
T ss_pred HHHHhhCchhHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4566667766778999999999999999999998764
No 418
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=24.72 E-value=1.4e+02 Score=28.70 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=41.5
Q ss_pred HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh--------------hHHHHHHhCCChHHHHHhhC
Q 009184 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--------------EHTKVVIDHGAVPIFVKLLY 169 (541)
Q Consensus 113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~--------------~~~~~i~~~g~i~~L~~lL~ 169 (541)
.+...+..+++-|.+++ ...+..|+.+|.-++.|.- .+...+.+.|+++.|..+|.
T Consensus 57 ~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34567888999999887 8999999999999998752 22333456677777777664
No 419
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.69 E-value=2.9e+02 Score=24.29 Aligned_cols=69 Identities=13% Similarity=0.262 Sum_probs=46.8
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhc
Q 009184 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 409 (541)
Q Consensus 330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 409 (541)
+.+...+.++ +.-++..++-++........ ... .+++.+-..+.+++..|++.+.|+|..+.
T Consensus 108 ~~~~~w~~s~-~~~~rR~~~~~~~~~~~~~~-~~~----------------~~l~~~~~~~~d~~~~Vqkav~w~L~~~~ 169 (197)
T cd06561 108 DLLEEWAKSE-NEWVRRAAIVLLLRLIKKET-DFD----------------LLLEIIERLLHDEEYFVQKAVGWALREYG 169 (197)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhcc-cHH----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6677888888 88888888777766654311 122 13444455555678899999999999998
Q ss_pred cCCCHHHH
Q 009184 410 SGGTHEQI 417 (541)
Q Consensus 410 ~~~~~~~~ 417 (541)
.. .++..
T Consensus 170 ~~-~~~~v 176 (197)
T cd06561 170 KK-DPERV 176 (197)
T ss_pred hh-CHHHH
Confidence 76 44433
No 420
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=24.57 E-value=5.5e+02 Score=23.53 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCh------------------hhHHHHHHHHhHhhcCC
Q 009184 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP------------------SVLIPALRTVGNIVTGD 316 (541)
Q Consensus 255 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~------------------~v~~~al~~L~nl~~~~ 316 (541)
.+......+|..+..+... ++-...+.+.++++.+.+.|..-++ .....=...||.++. +
T Consensus 76 ~~~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~ 153 (226)
T PF14666_consen 76 NNQKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-T 153 (226)
T ss_pred cchHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-C
Q ss_pred chhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchh
Q 009184 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFD 396 (541)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 396 (541)
+...+.+-+.+++..+..++....++.+.+- +++++=-+.+.... ..|-..|.+++..
T Consensus 154 ~~Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~~~~R-------------------~iLsKaLt~~s~~ 211 (226)
T PF14666_consen 154 PNGLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVDGHPR-------------------IILSKALTSGSES 211 (226)
T ss_pred hhHHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCccHHH-------------------HHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHHhc
Q 009184 397 IKKEAAWAISNAT 409 (541)
Q Consensus 397 v~~~a~~aL~nl~ 409 (541)
+|..|...|..++
T Consensus 212 iRl~aT~~L~~ll 224 (226)
T PF14666_consen 212 IRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHHh
No 421
>PRK09169 hypothetical protein; Validated
Probab=24.42 E-value=1.5e+03 Score=28.67 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHHh
Q 009184 256 DDEVLTDACWALSYL 270 (541)
Q Consensus 256 d~~v~~~a~~~L~~l 270 (541)
++.-+.+++|+|+..
T Consensus 329 ~aQ~vAN~LNALSKW 343 (2316)
T PRK09169 329 NAQAVANALNALSKW 343 (2316)
T ss_pred CHHHHHHHHHHHhcC
Confidence 444455555555543
No 422
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=24.09 E-value=5.1e+02 Score=31.20 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=75.4
Q ss_pred CCHHHHHH----hhcCCCcHHHHHHHHHHHHHHhcCChh-HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009184 116 GVVPRFVE----FLLREDYPQLQFEAAWALTNIASGTSE-HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (541)
Q Consensus 116 g~i~~Lv~----lL~~~~~~~i~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 190 (541)
..++.++. +|.+.+ +.++.-+......+-..... +++. ++..|+.++.+.+..-...|+.+|..++...
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fds~~qqe-----Vv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFDSYCQQE-----VVGALVTHIGSGNSQEVDAALDVLCELAEKN 504 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-HHHHHH-----HHHHHHHHHHH--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhccchhHHH-----HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc
Confidence 44555554 455666 88888777777766654433 2333 4677888876666655678999999999654
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHH
Q 009184 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVL 260 (541)
Q Consensus 191 ~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~ 260 (541)
+.. ...-...+..++..+ ..-+..-.+.+..+|+.++.............+--.+-+.|.+.+....
T Consensus 505 ~~~--l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K 571 (1426)
T PF14631_consen 505 PSE--LQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYK 571 (1426)
T ss_dssp HHH--HHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHH
T ss_pred HHH--HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHH
Confidence 431 111122455555555 3334444666778888887654222222223334445667777776653
No 423
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=23.95 E-value=1e+02 Score=29.57 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=55.8
Q ss_pred cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC------CH-------HHHHHHHHcCChHHHhhhcCC--------CC-
Q 009184 380 ANIIGPLVALLENAEFDIKKEAAWAISNATSGG------TH-------EQIKFLVIQGCIKPLCDLLVC--------PD- 437 (541)
Q Consensus 380 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~------~~-------~~~~~l~~~~~i~~L~~lL~~--------~~- 437 (541)
...+..+++-|...+...|..|+.+|.-++.|. .. .....|.+.|+++.|..+|.. .+
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~ 138 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQ 138 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 356778888898889999999999999998764 12 333456678999999988842 01
Q ss_pred -----------hHHHHHHHHHHHHHHHhhHhh
Q 009184 438 -----------PRIVTVCLEGLENILKVGEAE 458 (541)
Q Consensus 438 -----------~~~~~~~l~~L~~l~~~~~~~ 458 (541)
......++.++..++......
T Consensus 139 ~~~~~~~~~~~~~el~~~LTilY~~vev~r~~ 170 (293)
T PF07923_consen 139 DSNLPAVSLADSTELRVLLTILYFMVEVARRD 170 (293)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 134456677777777655443
No 424
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=23.77 E-value=6.7e+02 Score=24.21 Aligned_cols=103 Identities=13% Similarity=0.193 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhhhcCCCCC----------------------ChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhcc
Q 009184 217 SMLRNATWTLSNFCRGKPQP----------------------PFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSD 272 (541)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~----------------------~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~ 272 (541)
.++..-+..+.++|...... ......|.+..+++.+... +...+...+.|+-....
T Consensus 47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR 126 (303)
T PF12463_consen 47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR 126 (303)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence 46777788888888732111 1112256677777776543 55667777777777776
Q ss_pred CChH--HHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHHHHhHhhcCCchh
Q 009184 273 GTND--KIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQ 319 (541)
Q Consensus 273 ~~~~--~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~~~~ 319 (541)
+.+. ....+.+.|+++.++.-+-++ +..+...+.-.||.+..++...
T Consensus 127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDA 178 (303)
T ss_pred CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHH
Confidence 6554 233567889999999877544 3458888999999999887643
No 425
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.76 E-value=7.6e+02 Score=28.37 Aligned_cols=128 Identities=10% Similarity=-0.008 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHH
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLL 207 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~r~~i~~~g~i~~Ll 207 (541)
+++|..++..|+.....-| ..+++...+.++-..|+..+..||..++.+|-.+..... ..+.. .+.+=..++
T Consensus 301 ~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lF--tsRFK~RIV 375 (1048)
T KOG2011|consen 301 PDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELF--TSRFKDRIV 375 (1048)
T ss_pred hHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHH--HHHHHHHHH
Confidence 8999999988888776444 346667788888889999999999999999999986532 11111 112334455
Q ss_pred HhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 009184 208 AQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (541)
Q Consensus 208 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 268 (541)
.+...+-+..|+...+..+..+.... .....-+..+.+++.+.++.+...+...+.
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 55534555666655554444333222 111233445666777777777666665554
No 426
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.59 E-value=1.5e+02 Score=23.84 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=30.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 009184 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (541)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~ 198 (541)
+|+.|+.-|.++++++...|+.+|...|.+. .+.+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 4788999999999999999999999999777 3444443
No 427
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=23.08 E-value=1e+03 Score=26.20 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~ 148 (541)
++.+.-.++.+++...| --.+..+++...++.|..++.. .++|.+|+.|+..+.+..
T Consensus 206 npgl~~~cLdc~g~fVS---WIdInLIaNd~f~nLLy~fl~i---eelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVS---WIDINLIANDYFLNLLYKFLNI---EELRIAACNCILAIVSKK 262 (980)
T ss_pred CchHHHHHHHHHHHHhh---hhhhhhhhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcC
Confidence 78888888888888875 3345566677789999999984 789999999999998754
No 428
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=23.00 E-value=8.8e+02 Score=25.32 Aligned_cols=195 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (541)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 166 (541)
+.....++..+.........||+.. +.++..|+.+ +-. .+++..++..-..=+. +......++..=+.|.++.
T Consensus 172 p~lvkvvl~~ia~vgeS~qyPPVNW---aalLsPLMRl--nfG-eEvq~lCLeiAvtQaq-SSqsAa~fLg~WlsPpli~ 244 (589)
T PF11229_consen 172 PSLVKVVLKPIATVGESYQYPPVNW---AALLSPLMRL--NFG-EEVQQLCLEIAVTQAQ-SSQSAAMFLGSWLSPPLIH 244 (589)
T ss_pred HHHHHHHHHHhhhcCCCCCCCCccH---HHHhhHHHhc--ccc-HHHHHHHHHHHHHhcc-ccccHHHHHHhhcCcchhh
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC--CCCChhhhhch
Q 009184 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPA 244 (541)
Q Consensus 167 lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~ 244 (541)
-+ +...+...+..+.-...+-++-+-...-.+..-...+......++++...++..|..-.... +..........
T Consensus 245 sL---s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~t 321 (589)
T PF11229_consen 245 SL---SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCET 321 (589)
T ss_pred hh---hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q ss_pred HHHHHHhh----ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009184 245 LPALAHLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (541)
Q Consensus 245 l~~L~~lL----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~ 291 (541)
...+..+| +.++-+.-...+.||+.+++..-+++..+.+.++-+...
T Consensus 322 tekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~eidrItqitK~nieKa~F 372 (589)
T PF11229_consen 322 TEKIFDLLPNKIQRNEVELYIGVAKCLSEMTDTEIDRITQITKDNIEKAIF 372 (589)
T ss_pred HHHHHHhCcccccHHHHHHHHHHHHHHhhcCHHHHHHHHHhhhccchhhhh
No 429
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=22.91 E-value=4.8e+02 Score=22.29 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=52.5
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH-hhcCCC-chhHHHHHHHHHHHHh
Q 009184 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN-LLSGNY-KKSIKKEACWTVSNIT 356 (541)
Q Consensus 279 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 356 (541)
..+++..+.+.+.+.+.++++.+...+++++..+...-....+.-+ .-+++.++. ++.++. ....|..++.++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~el-e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLEL-EVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 3466667888888888777788999999999999854332221111 123444444 666552 2356777888999998
Q ss_pred cCC
Q 009184 357 AGN 359 (541)
Q Consensus 357 ~~~ 359 (541)
...
T Consensus 146 ~~p 148 (168)
T PF12783_consen 146 KDP 148 (168)
T ss_pred hCh
Confidence 743
No 430
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.61 E-value=4.6e+02 Score=21.94 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=46.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh
Q 009184 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239 (541)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 239 (541)
.-..+..+|.+++++++..|+.||...- .+ .+..+ -+.|.+++ + +...+...+ .+. +..+.......
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~~k--~~----~l~pY--~d~L~~Ll-d--d~~frdeL~-~f~-~~~~~~~I~~e 84 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLTWK--DP----YLTPY--KDNLENLL-D--DKTFRDELT-TFN-LSDESSVIEEE 84 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH----HHHhH--HHHHHHHc-C--cchHHHHHH-hhc-ccCCcCCCCHH
Confidence 4466788999999999999999998742 22 11111 24455555 2 222232222 111 22222334455
Q ss_pred hhhchHHHHHHhhc
Q 009184 240 QVSPALPALAHLIH 253 (541)
Q Consensus 240 ~~~~~l~~L~~lL~ 253 (541)
....++|.++.+|.
T Consensus 85 hR~~l~pvvlRILy 98 (141)
T PF07539_consen 85 HRPELMPVVLRILY 98 (141)
T ss_pred HHhHHHHHHHHHHH
Confidence 56788888888774
No 431
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=22.47 E-value=7.6e+02 Score=24.41 Aligned_cols=141 Identities=10% Similarity=0.069 Sum_probs=78.5
Q ss_pred HHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh-hcC---CC-chhHHHHHHHHH
Q 009184 279 QAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSG---NY-KKSIKKEACWTV 352 (541)
Q Consensus 279 ~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~---~~-~~~v~~~a~~~L 352 (541)
+.+.+.++++.|+.+-.. ..+.++..+++.+.++....+.. .+....+...+.++ +.. .. ...+.++-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 346667888888888655 34678888888888888755433 12233455556666 432 21 334666666666
Q ss_pred HHHhc---CChHHHHHHHhhchhh--------------H-HHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC--
Q 009184 353 SNITA---GNREQIQVIMHVHAFS--------------I-IAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG-- 412 (541)
Q Consensus 353 ~nl~~---~~~~~~~~~~~~~~~~--------------~-~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~-- 412 (541)
..+|. .++......++...-. . ..--+-.++..|+.++.++ -++-..|..+|.-++...
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66665 4555444111100000 0 0000113566777777766 466666666666665544
Q ss_pred CHHHHHHHHH
Q 009184 413 THEQIKFLVI 422 (541)
Q Consensus 413 ~~~~~~~l~~ 422 (541)
++....++++
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5555666666
No 432
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.38 E-value=81 Score=32.23 Aligned_cols=141 Identities=21% Similarity=0.277 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHH
Q 009184 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (541)
Q Consensus 254 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 333 (541)
..+..+...++.++..++.......+ .+...++..--..+....+. ....+..+..+....+...+..........+-
T Consensus 257 eS~~hvVek~~~~~~s~~~~~~~t~q-l~k~~l~~pTe~v~~l~~~~-I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk 334 (763)
T KOG4231|consen 257 ESDQHVVEKACVALSSLARDVGVTMQ-LMKCDLMKPTETVLKLSSPD-IISLLQVVVTLAFVSDSVSQEMLTKDMLKALK 334 (763)
T ss_pred cccchhhcccccccccHHHHHHHHHH-HHHHHhcCcchhhhhhcccc-HhhHHHHHhcCCchhhhHHhhhhHHHHHHHHH
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184 334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 408 (541)
Q Consensus 334 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 408 (541)
.+..+. +++++.+|..++++++.+...... .+-+..+-..+++.+..+.+++-+.+..|+..+
T Consensus 335 ~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~-----------~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 335 SLCAHK-NPELQRQALLAVGNLAFCLENRRI-----------LITSPSLRELLMRLIVTPEPRVNKAAARALAIL 397 (763)
T ss_pred HHhccc-ChHHHHHHHHHHHHheeccccccc-----------ccCChHHHHHHHHHhcccccccchhhhHHHHHh
No 433
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.31 E-value=1.1e+03 Score=26.11 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHH
Q 009184 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (541)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 164 (541)
.-+.++..++..+..++... ++.- ..++..||+-|.+++ ..+...|.+.|.+|....|..+..++ ..+
T Consensus 316 ~L~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vvi-----~EI 383 (988)
T KOG2038|consen 316 PLEEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVVI-----DEI 383 (988)
T ss_pred cHHHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeehH-----HHH
Confidence 34678899999999998753 2222 235777888888888 68888999999999887776665443 334
Q ss_pred HHhhCCCC--HHHHHHHHHHHHHhh
Q 009184 165 VKLLYSPS--DDVREQAVWALGNIA 187 (541)
Q Consensus 165 ~~lL~~~~--~~v~~~a~~~L~nl~ 187 (541)
..++-.++ ..-.-.|+.+|..+.
T Consensus 384 er~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 384 ERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHHcccCccccceeehhhhhhhhH
Confidence 44554433 233344555565554
No 434
>PLN03205 ATR interacting protein; Provisional
Probab=20.73 E-value=4.9e+02 Score=25.97 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=64.2
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhc---CCchhHHHHHhcCchHHH---HHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL---LNLLSGNYKKSIKKEACWTVSNITAGN 359 (541)
Q Consensus 286 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L---~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (541)
+++.|+.+..-++..+...+++.|..+.. ++......-.+.+++..+ .+.-.......||.+|..+..-|...+
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 34456666666666677777776655543 222222333344444332 222111225677777776655554422
Q ss_pred -hH-HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhcc
Q 009184 360 -RE-QIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATS 410 (541)
Q Consensus 360 -~~-~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~ 410 (541)
+. ... .+....+++.+-++|..+ ...|+++|+..|.-+..
T Consensus 404 na~~eRE-----------kFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 404 DAYTARE-----------SFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred chhHHHH-----------HhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 22 233 455556778888888764 57899999888776654
No 435
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.13 E-value=6.1e+02 Score=22.39 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=54.3
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhcCC-h--------HHHHHHHhhchhh-HHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184 331 CLLNLLSGNYKKSIKKEACWTVSNITAGN-R--------EQIQVIMHVHAFS-IIAVIEANIIGPLVALLENAEFDIKKE 400 (541)
Q Consensus 331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~--------~~~~~~~~~~~~~-~~~l~~~~~l~~L~~~l~~~~~~v~~~ 400 (541)
.+++..... =.++|..|+.++..+.... + +....++..+.+. .........+|.++.+|.-+ ..+..
T Consensus 11 ~llrqa~EK-iDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~--~y~~~ 87 (193)
T PF12612_consen 11 GLLRQAAEK-IDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLP--EYRYS 87 (193)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhccH--HHHHH
Confidence 333333333 4568888888888887422 1 2222111111111 00011223566777666543 55666
Q ss_pred HHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC--CCChHHHHHHHHHHHHHHH
Q 009184 401 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 401 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~--~~~~~~~~~~l~~L~~l~~ 453 (541)
.+..|..-+.+.+....+ .....|++++. ..++......+..|..+++
T Consensus 88 ll~Glv~S~G~~tesl~~-----~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 88 LLSGLVVSAGGLTESLVR-----ASSAALLSYLRELSDSPEELEQVLSDLLSILK 137 (193)
T ss_pred HHhHHHhcCCCCchhHHH-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 666665555443332222 12345555554 4455555555555555555
No 436
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.02 E-value=1.1e+02 Score=29.87 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCC
Q 009184 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 178 ~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
+....++++|...+...+.+.+.|+++.++.-.. ++.++-+++....++.+|.++.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 4677899999888889999999999988777553 4567888999999999998875
Done!