Query 009184
Match_columns 541
No_of_seqs 370 out of 2720
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 20:43:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1E-76 3.4E-81 621.2 46.7 518 1-540 1-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 1.9E-65 6.4E-70 532.8 48.0 486 32-540 17-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 7.8E-65 2.7E-69 533.0 49.4 501 1-513 3-503 (528)
4 1wa5_B Importin alpha subunit; 100.0 2.2E-59 7.7E-64 491.5 42.1 491 8-511 13-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 8.7E-47 3E-51 388.1 48.4 426 75-512 22-449 (450)
6 3now_A UNC-45 protein, SD10334 100.0 5.5E-40 1.9E-44 348.0 30.8 367 74-458 378-787 (810)
7 3nmz_A APC variant protein; pr 100.0 5E-40 1.7E-44 330.6 28.6 368 69-455 28-452 (458)
8 1xm9_A Plakophilin 1; armadill 100.0 9E-39 3.1E-43 327.0 32.8 365 117-509 3-452 (457)
9 3tpo_A Importin subunit alpha- 100.0 7.7E-38 2.6E-42 326.9 36.7 367 72-453 118-497 (529)
10 3ul1_B Importin subunit alpha- 100.0 4.2E-38 1.4E-42 327.1 33.8 368 72-454 99-479 (510)
11 1jdh_A Beta-catenin; beta-cate 100.0 1.1E-36 3.8E-41 319.5 40.4 402 73-504 101-528 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 2.8E-36 9.5E-41 323.1 41.2 405 73-509 98-550 (644)
13 3now_A UNC-45 protein, SD10334 100.0 5.4E-37 1.8E-41 325.2 30.5 404 74-505 331-781 (810)
14 1xm9_A Plakophilin 1; armadill 100.0 5.6E-37 1.9E-41 313.7 26.1 361 74-454 3-450 (457)
15 1wa5_B Importin alpha subunit; 100.0 2.4E-35 8.3E-40 308.9 36.0 367 72-454 129-511 (530)
16 2jdq_A Importin alpha-1 subuni 100.0 9.4E-36 3.2E-40 305.8 32.0 366 73-454 64-444 (450)
17 4b8j_A Importin subunit alpha- 100.0 2.3E-35 7.9E-40 309.1 33.9 366 73-454 117-497 (528)
18 3l6x_A Catenin delta-1; cateni 100.0 3.3E-35 1.1E-39 301.7 31.2 364 73-455 48-478 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 2.3E-33 7.9E-38 305.0 43.3 405 73-509 234-686 (780)
20 3l6x_A Catenin delta-1; cateni 100.0 2E-34 6.8E-39 296.0 31.5 368 114-507 46-477 (584)
21 3nmz_A APC variant protein; pr 100.0 1.2E-33 4.1E-38 284.2 27.1 328 70-412 67-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 7.1E-33 2.4E-37 290.5 29.9 403 73-506 59-489 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 7.8E-32 2.7E-36 288.6 33.3 404 73-506 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 1.7E-31 5.7E-36 290.4 32.7 402 73-505 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 9.8E-30 3.3E-34 248.6 24.8 274 170-457 43-338 (354)
26 3nmw_A APC variant protein; AR 100.0 3.2E-30 1.1E-34 252.0 20.6 275 87-364 46-341 (354)
27 4hxt_A De novo protein OR329; 100.0 6.2E-27 2.1E-31 220.4 25.6 241 116-359 2-243 (252)
28 1xqr_A HSPBP1 protein; armadil 100.0 4.2E-27 1.4E-31 223.8 22.5 236 257-510 54-291 (296)
29 4db8_A Armadillo-repeat protei 100.0 5.1E-27 1.7E-31 221.1 21.3 239 116-357 12-251 (252)
30 4hxt_A De novo protein OR329; 99.9 3E-26 1E-30 215.7 24.9 241 159-412 2-243 (252)
31 4db8_A Armadillo-repeat protei 99.9 1.9E-26 6.6E-31 217.2 21.1 239 73-314 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 6.8E-24 2.3E-28 220.6 23.4 322 74-410 335-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 3.6E-23 1.2E-27 215.1 25.6 385 74-486 297-756 (778)
34 4db6_A Armadillo repeat protei 99.9 1.4E-22 4.9E-27 185.0 24.0 199 241-452 10-208 (210)
35 4db6_A Armadillo repeat protei 99.9 1.4E-22 4.9E-27 185.0 21.5 199 114-314 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 4.9E-22 1.7E-26 188.9 21.2 188 131-319 54-243 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 2.1E-20 7.2E-25 169.8 15.1 197 117-315 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 6.4E-20 2.2E-24 166.7 15.0 197 73-273 8-230 (233)
39 4fdd_A Transportin-1; heat rep 99.8 1.5E-17 5.1E-22 184.0 23.2 354 75-456 92-474 (852)
40 1b3u_A Protein (protein phosph 99.8 5.5E-17 1.9E-21 171.8 26.4 344 116-505 242-586 (588)
41 4fdd_A Transportin-1; heat rep 99.8 1.5E-18 5.2E-23 191.9 13.2 358 73-454 128-513 (852)
42 1b3u_A Protein (protein phosph 99.7 3.1E-16 1.1E-20 166.0 26.7 381 74-506 165-548 (588)
43 2vgl_B AP-2 complex subunit be 99.7 1.3E-15 4.5E-20 160.7 28.7 353 73-457 49-423 (591)
44 3grl_A General vesicular trans 99.7 4.8E-15 1.6E-19 150.4 30.9 369 73-459 21-455 (651)
45 3grl_A General vesicular trans 99.7 2E-14 6.8E-19 145.9 34.8 414 73-509 60-553 (651)
46 2vgl_B AP-2 complex subunit be 99.7 1.1E-15 3.7E-20 161.3 19.8 388 74-504 87-530 (591)
47 1oyz_A Hypothetical protein YI 99.7 4.4E-15 1.5E-19 141.6 21.9 258 113-449 20-278 (280)
48 1w63_A Adapter-related protein 99.6 9.4E-14 3.2E-18 147.1 29.0 324 73-453 70-414 (618)
49 1oyz_A Hypothetical protein YI 99.6 4.5E-14 1.5E-18 134.6 23.0 254 73-406 23-278 (280)
50 2bpt_A Importin beta-1 subunit 99.6 9.7E-14 3.3E-18 153.7 25.5 355 74-455 325-713 (861)
51 2bpt_A Importin beta-1 subunit 99.6 1E-13 3.6E-18 153.5 25.4 357 75-455 268-670 (861)
52 1qgr_A Protein (importin beta 99.6 2E-13 6.7E-18 151.6 25.3 359 74-455 129-539 (876)
53 1qgr_A Protein (importin beta 99.6 6.8E-13 2.3E-17 147.2 28.6 275 75-358 174-480 (876)
54 1ibr_B P95, importin beta-1 su 99.6 4.1E-14 1.4E-18 145.0 16.8 357 75-456 37-440 (462)
55 1ibr_B P95, importin beta-1 su 99.5 5.2E-13 1.8E-17 136.7 22.9 401 75-507 3-438 (462)
56 1w63_A Adapter-related protein 99.5 2.3E-13 8E-18 144.0 20.5 287 74-410 108-414 (618)
57 1u6g_C TIP120 protein, CAND1; 99.5 4E-12 1.4E-16 146.0 28.1 404 74-506 7-463 (1230)
58 3ltm_A Alpha-REP4; protein eng 99.4 8.8E-12 3E-16 113.1 19.0 187 115-358 18-204 (211)
59 2vgl_A Adaptor protein complex 99.4 1.6E-10 5.3E-15 122.0 29.9 328 73-453 74-433 (621)
60 3ltj_A Alpharep-4; protein eng 99.4 1E-11 3.4E-16 111.8 17.8 184 116-356 14-197 (201)
61 1u6g_C TIP120 protein, CAND1; 99.4 1.6E-11 5.6E-16 141.0 23.6 397 74-504 87-546 (1230)
62 3ltj_A Alpharep-4; protein eng 99.4 5.3E-11 1.8E-15 107.1 22.1 184 159-409 14-197 (201)
63 3ltm_A Alpha-REP4; protein eng 99.4 1.8E-11 6.3E-16 111.0 19.0 188 73-317 19-206 (211)
64 2vgl_A Adaptor protein complex 99.3 1.2E-10 4.1E-15 122.8 20.4 366 74-505 112-508 (621)
65 2db0_A 253AA long hypothetical 99.2 6.2E-09 2.1E-13 86.9 19.4 216 158-410 31-246 (253)
66 4gmo_A Putative uncharacterize 99.1 2.6E-09 9E-14 114.1 19.9 217 114-356 33-257 (684)
67 4ady_A RPN2, 26S proteasome re 99.1 1.6E-08 5.5E-13 108.0 22.6 273 74-413 393-679 (963)
68 3tjz_B Coatomer subunit gamma; 99.0 4.3E-08 1.5E-12 94.3 20.4 277 74-406 69-349 (355)
69 3b2a_A TON_1937, putative unch 99.0 4.1E-08 1.4E-12 85.8 17.0 226 242-504 32-259 (265)
70 4gmo_A Putative uncharacterize 98.9 7.4E-09 2.5E-13 110.6 13.0 197 242-453 34-258 (684)
71 3tjz_B Coatomer subunit gamma; 98.8 4.8E-08 1.6E-12 94.0 15.4 276 161-501 70-348 (355)
72 2db0_A 253AA long hypothetical 98.8 1.4E-06 4.7E-11 73.0 21.1 217 113-357 29-246 (253)
73 4ady_A RPN2, 26S proteasome re 98.8 9E-07 3.1E-11 94.7 24.5 273 75-411 431-720 (963)
74 2qk2_A LP04448P; mini spindles 98.7 2E-07 7E-12 86.1 15.0 185 204-410 18-205 (242)
75 2qk2_A LP04448P; mini spindles 98.7 8E-08 2.7E-12 88.8 10.1 186 162-357 18-205 (242)
76 2qk1_A Protein STU2; STU2P, XM 98.6 4E-07 1.4E-11 84.1 12.5 190 121-314 21-220 (249)
77 3b2a_A TON_1937, putative unch 98.6 2.1E-06 7.1E-11 75.2 15.4 188 116-316 33-220 (265)
78 1ho8_A Vacuolar ATP synthase s 98.5 3.1E-05 1E-09 76.2 24.9 321 158-505 76-475 (480)
79 2qk1_A Protein STU2; STU2P, XM 98.5 9.3E-07 3.2E-11 81.7 12.9 194 163-357 20-220 (249)
80 4hat_C Exportin-1; heat repeat 98.5 7.9E-05 2.7E-09 82.6 28.7 340 84-455 206-620 (1023)
81 1ho8_A Vacuolar ATP synthase s 98.4 0.00014 4.8E-09 71.6 25.3 320 74-410 78-476 (480)
82 1te4_A Conserved protein MTH18 98.4 6.1E-08 2.1E-12 80.2 1.2 121 115-270 11-131 (131)
83 1te4_A Conserved protein MTH18 98.3 1.6E-07 5.3E-12 77.7 2.6 121 158-312 11-131 (131)
84 2x1g_F Cadmus; transport prote 98.3 8.1E-05 2.8E-09 83.2 25.0 332 88-454 204-616 (971)
85 3dad_A FH1/FH2 domain-containi 98.3 4.1E-05 1.4E-09 71.6 18.4 205 246-453 121-335 (339)
86 2iw3_A Elongation factor 3A; a 98.3 6.2E-05 2.1E-09 81.7 22.4 302 74-409 15-323 (986)
87 1wa5_C Importin alpha RE-expor 98.3 0.00071 2.4E-08 75.4 30.8 343 77-454 89-526 (960)
88 2x19_B Importin-13; nuclear tr 98.3 0.00014 4.9E-09 81.1 25.2 344 126-507 459-847 (963)
89 2x1g_F Cadmus; transport prote 98.2 0.00013 4.4E-09 81.6 22.2 304 131-458 478-819 (971)
90 3m1i_C Exportin-1; heat repeat 98.2 0.0011 3.7E-08 74.6 29.5 339 85-454 207-619 (1049)
91 2iw3_A Elongation factor 3A; a 98.1 0.00039 1.3E-08 75.5 24.3 300 121-457 19-328 (986)
92 1wa5_C Importin alpha RE-expor 98.1 9.5E-05 3.2E-09 82.5 20.5 258 132-410 376-670 (960)
93 3ibv_A Exportin-T; karyopherin 98.1 2.8E-05 9.4E-10 86.1 15.2 303 84-413 204-569 (980)
94 2x19_B Importin-13; nuclear tr 98.1 0.0021 7.1E-08 71.7 29.7 348 75-454 243-650 (963)
95 3dad_A FH1/FH2 domain-containi 98.0 0.00029 9.9E-09 65.9 17.0 187 290-495 123-325 (339)
96 3m1i_C Exportin-1; heat repeat 97.9 0.0064 2.2E-07 68.4 29.2 357 74-456 139-572 (1049)
97 4hat_C Exportin-1; heat repeat 97.8 0.00077 2.6E-08 74.8 20.3 141 130-274 466-620 (1023)
98 3gjx_A Exportin-1; transport, 97.7 0.0074 2.5E-07 66.9 25.2 297 84-412 218-597 (1073)
99 3ibv_A Exportin-T; karyopherin 97.5 0.0068 2.3E-07 67.1 21.9 340 131-507 457-871 (980)
100 4ffb_C Protein STU2; tubulin f 97.5 0.002 6.8E-08 60.3 15.1 192 72-272 9-212 (278)
101 3c2g_A SYS-1 protein; beta-cat 97.5 0.034 1.2E-06 51.7 21.4 299 183-504 266-616 (619)
102 3oc3_A Helicase MOT1, MOT1; re 97.4 0.00034 1.2E-08 69.2 8.6 220 71-313 172-403 (800)
103 3gjx_A Exportin-1; transport, 97.3 0.053 1.8E-06 60.1 25.1 315 118-457 208-599 (1073)
104 1upk_A MO25 protein; transfera 97.2 0.019 6.5E-07 53.7 17.0 201 154-357 73-283 (341)
105 2of3_A ZYG-9; multifunctional 97.2 0.0052 1.8E-07 56.2 13.1 180 247-454 50-237 (266)
106 4ffb_C Protein STU2; tubulin f 97.1 0.0079 2.7E-07 56.2 14.3 186 206-411 14-213 (278)
107 3oc3_A Helicase MOT1, MOT1; re 97.1 0.0039 1.3E-07 61.9 11.7 244 117-406 175-432 (800)
108 2of3_A ZYG-9; multifunctional 97.0 0.026 8.9E-07 51.6 15.9 178 162-357 49-236 (266)
109 2fv2_A RCD1 required for cell 96.9 0.031 1.1E-06 49.9 15.1 185 256-454 14-225 (268)
110 3c2g_A SYS-1 protein; beta-cat 96.9 0.26 8.9E-06 45.9 22.2 173 268-453 267-473 (619)
111 1upk_A MO25 protein; transfera 96.8 0.12 4.1E-06 48.3 18.9 202 196-412 73-285 (341)
112 3u0r_A Apoptosis inhibitor 5; 96.4 0.42 1.4E-05 46.9 20.1 123 171-313 40-162 (507)
113 1lrv_A LRV, leucine-rich repea 96.2 0.0033 1.1E-07 57.1 4.4 45 288-352 197-241 (244)
114 3u0r_A Apoptosis inhibitor 5; 96.1 1.2 4E-05 43.8 22.1 124 214-357 40-163 (507)
115 3l9t_A Putative uncharacterize 96.1 0.19 6.4E-06 44.6 14.5 145 117-283 72-218 (240)
116 2fv2_A RCD1 required for cell 95.9 0.15 5.1E-06 45.6 13.1 153 261-421 74-233 (268)
117 2f31_A Diaphanous protein homo 95.7 0.13 4.6E-06 46.2 12.7 163 318-498 35-220 (233)
118 3ebb_A Phospholipase A2-activa 95.5 0.77 2.6E-05 42.9 17.3 173 118-296 105-287 (304)
119 3a6p_A Exportin-5; exportin-5, 95.4 2 6.8E-05 48.8 23.4 310 74-410 12-380 (1204)
120 2f31_A Diaphanous protein homo 95.2 0.9 3.1E-05 40.7 16.3 154 78-233 5-182 (233)
121 3eg5_B Protein diaphanous homo 95.2 0.23 7.8E-06 48.3 12.9 161 317-495 100-283 (383)
122 3a6p_A Exportin-5; exportin-5, 94.9 2 6.7E-05 48.8 21.7 289 131-453 27-380 (1204)
123 1lsh_A Lipovitellin (LV-1N, LV 94.8 3.2 0.00011 46.2 22.5 167 161-360 393-579 (1056)
124 3eg5_B Protein diaphanous homo 94.7 1.6 5.3E-05 42.4 17.5 157 76-234 69-249 (383)
125 3l9t_A Putative uncharacterize 94.5 0.71 2.4E-05 40.9 13.0 139 205-364 74-214 (240)
126 2bnx_A Diaphanous protein homo 94.3 0.88 3E-05 44.3 14.5 139 341-496 71-222 (386)
127 3ebb_A Phospholipase A2-activa 93.9 0.52 1.8E-05 44.1 11.5 141 88-232 117-264 (304)
128 1lsh_A Lipovitellin (LV-1N, LV 93.7 7.6 0.00026 43.2 22.6 160 215-414 408-580 (1056)
129 1lrv_A LRV, leucine-rich repea 93.3 0.043 1.5E-06 49.7 3.0 136 119-310 101-242 (244)
130 3fga_B Serine/threonine-protei 92.6 6.2 0.00021 38.1 16.9 251 135-410 102-366 (403)
131 2bnx_A Diaphanous protein homo 92.4 4.4 0.00015 39.3 16.1 156 77-234 8-187 (386)
132 2npp_B PP2A, B subunit, serine 89.4 11 0.00036 37.1 15.5 251 135-410 135-399 (449)
133 3qml_C Protein SLS1, nucleotid 89.0 6.6 0.00022 36.1 12.7 149 244-409 23-188 (315)
134 3gs3_A Symplekin, LD45768P; he 89.0 13 0.00044 33.6 23.0 98 78-186 20-117 (257)
135 2p8q_B Snurportin-1; heat repe 88.8 0.34 1.1E-05 29.3 2.7 38 11-50 2-40 (40)
136 3qml_C Protein SLS1, nucleotid 88.2 5 0.00017 36.9 11.3 135 299-453 42-189 (315)
137 3o2t_A Symplekin; heat repeat, 87.9 20 0.00067 34.5 18.6 89 88-187 40-128 (386)
138 3o2t_A Symplekin; heat repeat, 84.2 9.2 0.00032 36.8 11.6 129 301-454 41-184 (386)
139 1x5b_A Signal transducing adap 81.6 4.4 0.00015 33.8 7.3 73 425-507 53-126 (163)
140 2jak_A Serine/threonine-protei 81.4 12 0.00041 36.0 11.1 120 135-255 147-270 (392)
141 2npp_B PP2A, B subunit, serine 81.4 43 0.0015 32.9 18.1 243 109-364 155-406 (449)
142 1juq_A ADP-ribosylation factor 79.6 6.6 0.00023 33.0 7.8 74 425-508 51-130 (171)
143 1vsy_5 Proteasome activator BL 79.5 5.6 0.00019 43.8 9.2 187 161-357 135-365 (997)
144 3ldz_A STAM-1, signal transduc 79.4 4.3 0.00015 32.9 6.3 72 425-506 43-114 (140)
145 1mhq_A ADP-ribosylation factor 77.6 6.9 0.00024 32.0 7.1 74 425-508 39-118 (148)
146 1vdy_A Hypothetical protein (R 77.2 5.1 0.00017 32.3 6.0 73 425-509 50-133 (140)
147 3g2s_A C-terminal fragment of 77.1 7.1 0.00024 31.9 7.0 72 425-506 49-126 (149)
148 3ldz_A STAM-1, signal transduc 76.4 4.4 0.00015 32.8 5.6 72 382-453 43-114 (140)
149 1x5b_A Signal transducing adap 74.6 4.1 0.00014 34.0 5.0 74 73-146 52-125 (163)
150 1mhq_A ADP-ribosylation factor 74.2 9.3 0.00032 31.2 7.0 70 382-451 39-114 (148)
151 3gs3_A Symplekin, LD45768P; he 72.2 55 0.0019 29.4 17.1 117 381-505 53-172 (257)
152 3g2s_A C-terminal fragment of 72.2 13 0.00044 30.4 7.4 72 382-453 49-126 (149)
153 1juq_A ADP-ribosylation factor 69.3 9.6 0.00033 32.0 6.2 71 382-452 51-127 (171)
154 3zyq_A Hepatocyte growth facto 68.0 14 0.00047 32.7 7.2 72 425-506 46-118 (226)
155 1dvp_A HRS, hepatocyte growth 66.9 16 0.00054 32.1 7.5 72 425-506 43-115 (220)
156 2jak_A Serine/threonine-protei 65.6 56 0.0019 31.4 11.3 191 111-310 169-363 (392)
157 3fga_B Serine/threonine-protei 64.9 1E+02 0.0035 29.7 18.0 229 242-507 128-367 (403)
158 3zyq_A Hepatocyte growth facto 63.2 5.3 0.00018 35.4 3.6 74 73-146 45-118 (226)
159 3gae_A Protein DOA1; UFD3, CDC 57.7 48 0.0017 29.7 9.0 106 169-274 100-219 (253)
160 1dvp_A HRS, hepatocyte growth 57.6 7.3 0.00025 34.3 3.5 74 73-146 42-115 (220)
161 1elk_A Target of MYB1; superhe 56.7 31 0.0011 28.3 7.0 72 425-506 54-130 (157)
162 3gae_A Protein DOA1; UFD3, CDC 55.9 36 0.0012 30.5 7.9 101 296-410 101-217 (253)
163 1vsy_5 Proteasome activator BL 55.8 1.2E+02 0.0041 33.3 13.3 199 239-454 129-366 (997)
164 1vdy_A Hypothetical protein (R 55.4 38 0.0013 27.2 6.9 73 381-453 49-130 (140)
165 3ut4_A CTHE_2751, putative unc 53.9 34 0.0012 27.1 6.3 95 381-506 31-130 (134)
166 3pst_A Protein DOA1; protein d 53.2 43 0.0015 32.5 8.2 103 294-410 271-389 (425)
167 3pst_A Protein DOA1; protein d 52.6 52 0.0018 31.9 8.7 131 134-275 243-392 (425)
168 3l3f_X Protein DOA1, DOA1/UFD3 49.3 41 0.0014 31.9 7.3 102 295-410 209-326 (362)
169 3l3f_X Protein DOA1, DOA1/UFD3 49.1 51 0.0017 31.3 7.9 131 134-275 180-329 (362)
170 1wjt_A Transcription elongatio 48.8 19 0.00064 27.2 4.0 38 470-507 47-85 (103)
171 1elk_A Target of MYB1; superhe 43.6 52 0.0018 26.9 6.3 71 382-452 54-129 (157)
172 3gjx_B Snurportin-1; transport 42.7 5.3 0.00018 37.4 0.1 44 8-52 28-71 (365)
173 2b6c_A Hypothetical protein EF 37.9 2E+02 0.0068 24.9 12.2 137 246-419 58-196 (220)
174 3s4w_B Protein FACD2, fanconi 37.8 4.9E+02 0.017 29.4 19.3 299 117-452 158-506 (1323)
175 2xpp_A IWS1, ECU08_0440; trans 37.5 88 0.003 25.2 6.5 75 416-505 53-135 (145)
176 2b6c_A Hypothetical protein EF 37.2 2E+02 0.0069 24.8 13.1 140 119-283 58-199 (220)
177 2xpp_A IWS1, ECU08_0440; trans 33.9 1.8E+02 0.0063 23.3 8.1 75 278-356 54-135 (145)
178 3jxy_A Alkylpurine DNA glycosy 29.9 1.6E+02 0.0055 25.7 7.7 71 286-364 132-202 (232)
179 1vsy_4 Proteasome activator BL 28.2 2.6E+02 0.009 29.7 10.2 120 150-271 331-454 (799)
180 3jxy_A Alkylpurine DNA glycosy 27.5 3E+02 0.01 23.9 12.0 140 246-423 64-207 (232)
181 4atg_A TAF6; transcription, TF 26.8 2.2E+02 0.0075 24.2 7.6 112 158-270 39-160 (196)
182 1pqv_S STP-alpha, transcriptio 26.3 1E+02 0.0034 28.6 5.8 37 470-506 38-74 (309)
183 3s4w_B Protein FACD2, fanconi 24.6 8.1E+02 0.028 27.8 16.7 228 72-314 241-507 (1323)
184 1w9c_A CRM1 protein, exportin 24.0 4.3E+02 0.015 24.4 13.8 184 300-506 44-245 (321)
185 3rru_A TOM1L1 protein; structu 21.5 1.6E+02 0.0056 23.8 5.6 73 425-507 54-131 (152)
186 2g7o_A Protein TRAM; four heli 20.8 93 0.0032 21.4 3.2 19 492-510 51-69 (70)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-76 Score=621.22 Aligned_cols=518 Identities=46% Similarity=0.748 Sum_probs=404.5
Q ss_pred CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCC-CccCCCCCchhhhcCCHHH
Q 009184 1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP-LANDVNAPGTAKKLENLPV 77 (541)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 77 (541)
|+++++. .+++|+++||+ +.|++|+||||+++.++|||+||++.+.|||+.....++. .+..............++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7887775 67899999998 8999999999999999999999999999999875422221 1111111111112247899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009184 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (541)
Q Consensus 78 l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~ 157 (541)
+++.++|+|++.++.|+..+|++++.+++++++.+++.|++|.|+++|+.++++.++..|+|+|+||+.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999987766999999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC----hhhHHHHHHHHHHhhhcCC
Q 009184 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~----~~~~~~~a~~~L~~l~~~~ 233 (541)
.|++|.|+.+|.++++.++++|+|+|+||+.+++.+|+.+.+.|++++|+.+|.... ...+.+.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995332 2457889999999999987
Q ss_pred -CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 234 -~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
+........+++|.|+.++.+++++++..++|+|++++....+..+.+++.|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 6666777789999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
+++++.....+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++.+.. .+++.|++|.|+.++.+
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~-----------~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQ-----------QVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHH-----------HHHHTTHHHHHHHHHHS
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHH-----------HHHhcCcHHHHHHHhcC
Confidence 999999999999999999999999998 999999999999999999999998 99999999999999999
Q ss_pred CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhH
Q 009184 393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQM 472 (541)
Q Consensus 393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 472 (541)
++.+++.+|+|+|+|++.+++++++.+|++.|++++|+++|+++|++++..++++|.+|++.+++.. ..+.|+..
T Consensus 389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~ 463 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIM 463 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-----ChHHHHHH
Confidence 9999999999999999998899999999999999999999999999999999999999999887643 35778999
Q ss_pred hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC---CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009184 473 IDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET---MPPGDASQPGFGFGGNGNPPAPSGGFNF 540 (541)
Q Consensus 473 i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (541)
|+++||+++|+.||+|+|++||++|..||++||+++++|+ .|+.++ ++|.|+.++ .++|+|||
T Consensus 464 iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~f~f 529 (529)
T 3tpo_A 464 IEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS--EGFAFQVQD---GAPGTFNF 529 (529)
T ss_dssp HHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--------------------------------------
T ss_pred HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCC--cccccCCCC---CCCCCCCC
Confidence 9999999999999999999999999999999999776655 365543 379998665 46789999
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.9e-65 Score=532.81 Aligned_cols=486 Identities=46% Similarity=0.761 Sum_probs=393.8
Q ss_pred HHHHHHHHhhHHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHH
Q 009184 32 NMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE 111 (541)
Q Consensus 32 ~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~ 111 (541)
-.++.|+++.+....+.++...+.+.....+.... ....-..++.+++.++|+|++.|+.|+..+|++++.+++|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ 95 (510)
T 3ul1_B 17 GMLETAAALFERNHMDSPDLGTDDDDLAMADIGSN-QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN 95 (510)
T ss_dssp -------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred ccHHHHHHHHHhhccCCccccCCccccchhhhccc-cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 34566666666666666655433222111111110 11111368999999999999999999999999999988999999
Q ss_pred HHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009184 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (541)
Q Consensus 112 ~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 191 (541)
+++.|++|.|+++|++++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++.+++++|+|+|+||+.+++
T Consensus 96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~ 175 (510)
T 3ul1_B 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175 (510)
T ss_dssp HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999877669999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCChHHHHHhhcCCC----hhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHH
Q 009184 192 RCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266 (541)
Q Consensus 192 ~~r~~i~~~g~i~~Ll~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~ 266 (541)
.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..++|+
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999995332 2457889999999999987 666667778999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHH
Q 009184 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346 (541)
Q Consensus 267 L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 346 (541)
|++++....+..+.+.+.|+++.|+.+|.+++..++.+++++|+|++++++..+..+++.|+++.|+.+|.++ ++.+++
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~ 334 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQK 334 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHH
Confidence 9999999888888899999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCCh
Q 009184 347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCI 426 (541)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i 426 (541)
.|+|+|+|++.+++.+.+ .+++.|+++.|+.++.+++.+++++|+|+|+|++.+++.+++.+|++.|++
T Consensus 335 ~A~~aL~nl~a~~~~~~~-----------~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i 403 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQ-----------QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII 403 (510)
T ss_dssp HHHHHHHHHTTSCHHHHH-----------HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCcHHHHH-----------HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence 999999999999999998 999999999999999999999999999999999998899999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 427 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 427 ~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
++|+++|+++|++++..++++|.+|++.+++.. ..+.|+.+|+++||+++|+.||+|+|++||++|..||++||+
T Consensus 404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-----chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999887643 357799999999999999999999999999999999999999
Q ss_pred CCCCCC---CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009184 507 DDEDET---MPPGDASQPGFGFGGNGNPPAPSGGFNF 540 (541)
Q Consensus 507 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (541)
+|++|+ .|+.++ ++|.|+.++ .++++|||
T Consensus 479 ~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~ 510 (510)
T 3ul1_B 479 VEEEEDQNVVPETTS--EGFAFQVQD---GAPGTFNF 510 (510)
T ss_dssp -------------------------------------
T ss_pred CccccccccCCCCCc--cccccCCCC---CCCCCCCC
Confidence 877665 355443 379998765 47789999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.8e-65 Score=533.03 Aligned_cols=501 Identities=80% Similarity=1.253 Sum_probs=404.5
Q ss_pred CCCCCCCCchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHH
Q 009184 1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA 80 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 80 (541)
|+++++.++++|+++||++++++|+||||+++.++|||+||++.+.|||++....+.. +............+.+|.+++
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~l~~lv~ 81 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAP-VPASAATGVDKKLESLPAMIG 81 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cccccccchhhhHHHHHHHHH
Confidence 7778888899999999999999999999999999999999999999999974322211 010111112223468999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCC
Q 009184 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (541)
Q Consensus 81 ~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~ 160 (541)
.|.++++..+..|++.|+++++...+++++.++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus 82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~ 161 (528)
T 4b8j_A 82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161 (528)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence 99999999999999999999987756889999999999999999998766899999999999999998999999999999
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhh
Q 009184 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (541)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 240 (541)
++.|+.+|.++++.+++.|+|+|+||+.+.+.+++.+...|++++|+.++..+.+..++..++|+|++|+...+......
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 241 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 99999999999999999999999999999898999999999999999999777889999999999999999887777777
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 320 (541)
..+++|.|+.++.+++++++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|++++.+.+...
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999999999999999999999888888889999999999999999999999999999999999999888
Q ss_pred HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE 400 (541)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 400 (541)
+.+++.|+++.|+.+|.+..++.++.+|+|+|+|++.+++..+. .+++.|+++.|+.+|.+++++++..
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~-----------~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ-----------AVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH-----------HHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH-----------HHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 89999999999999998765789999999999999998888888 8999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHH
Q 009184 401 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE 480 (541)
Q Consensus 401 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 480 (541)
|+|+|+|++..++++...++++.|+++.|+.+|..++++++..++++|.+|+..++......+...+.|+..++++||++
T Consensus 391 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 470 (528)
T 4b8j_A 391 AAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLE 470 (528)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHH
Confidence 99999999998788999999999999999999999999999999999999999887644322224677999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCCC
Q 009184 481 KIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 513 (541)
Q Consensus 481 ~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~~~ 513 (541)
+|+.|++|++++++++|..|+++||+.+++++.
T Consensus 471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM 503 (528)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCcccccc
Confidence 999999999999999999999999998887764
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.2e-59 Score=491.47 Aligned_cols=491 Identities=54% Similarity=0.825 Sum_probs=424.8
Q ss_pred CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhHHHHHhhhhcccc---CCCCCccCC---CCCchh-hhcCCHHHH
Q 009184 8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLANDV---NAPGTA-KKLENLPVM 78 (541)
Q Consensus 8 ~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~---~~~~~~~~~---~~~~~~-~~~~~l~~l 78 (541)
+++.|++.||+ + +|++|+||||++..++|||+||++.+.|||+.... .+...+.+. ...... ...+.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 92 (530)
T 1wa5_B 13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92 (530)
T ss_dssp CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence 67889999999 8 89999999999999999999999999999987532 111000000 000000 123579999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC
Q 009184 79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (541)
Q Consensus 79 ~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~ 158 (541)
++.|+++++..+..|+..|+++++....++++.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 172 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 99999999999999999999999876567788899999999999999997339999999999999999889999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCC
Q 009184 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237 (541)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 237 (541)
|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+...|+++.|+.++ .+.+..++..++|+|++|+.+. +...
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999999888999999999999999999 5588999999999999999987 6667
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (541)
Q Consensus 238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 317 (541)
.....+++|.|+.++.++++.++..++|+|++++...+.....+++.|+++.|+.+|.++++.++..|+++|++++.+.+
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 77779999999999999999999999999999998888778888999999999999999999999999999999999988
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI 397 (541)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 397 (541)
...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++..++ .+++.|+++.|+.+|.++++++
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~-----------~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ-----------AVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH-----------HHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHCCCHHHHHHHHhcCCHHH
Confidence 8888889999999999999998 899999999999999998888888 8899999999999999999999
Q ss_pred HHHHHHHHHHhccCCCH--HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhh
Q 009184 398 KKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 475 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~ 475 (541)
+..|+|+|+|++..+.+ +...++++.|+++.|+.++..++++++..++++|.+++..++..........++|+..|.+
T Consensus 400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHH
Confidence 99999999999987666 7888999999999999999999999999999999999988765422101134678999999
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCC
Q 009184 476 AEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE 511 (541)
Q Consensus 476 ~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~ 511 (541)
+||+++|+.|++|++++|++.|..+|++||..+++|
T Consensus 480 ~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 480 AGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp TTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999999999999887764
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=8.7e-47 Score=388.09 Aligned_cols=426 Identities=59% Similarity=0.941 Sum_probs=386.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhc-CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~-g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
++.+++.++++++.++..|+..|+++++...+++.+.+++. |++|.|+++|++++++.++..|+++|.+++.++++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78999999999999999999999999875446777888887 99999999999983499999999999999998888888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
.+++.|+++.|+++|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.++.++..+.+..++..++|+|.+++.+.
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999998899999999999999999955678999999999999999886
Q ss_pred -CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 234 -~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
+........+++|.|+.++.++++.++..++|+|.+++...++....+.+.|+++.|+.+|.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 5556666689999999999999999999999999999988777778888899999999999999999999999999999
Q ss_pred hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~ 392 (541)
+.+.+...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+ .+++.|+++.|+.++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~-----------~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQ-----------TVIDANIFPALISILQT 329 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHH-----------HHHHTTHHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHCCCHHHHHHHHhc
Confidence 999888888888999999999999998 899999999999999998888888 88899999999999999
Q ss_pred CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhH
Q 009184 393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQM 472 (541)
Q Consensus 393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 472 (541)
++++++..|+|+|+|++..++++....+++.|+++.|+.+++.++++++..++++|.+++..++..........++|+..
T Consensus 330 ~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~ 409 (450)
T 2jdq_A 330 AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCAL 409 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHH
Confidence 99999999999999999876788888899999999999999999999999999999999987765432111134679999
Q ss_pred hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC
Q 009184 473 IDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET 512 (541)
Q Consensus 473 i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~~ 512 (541)
|.+.||+++|..|++|++.++++.|..+|++||+++++++
T Consensus 410 l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 410 IEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999999999999998776653
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.5e-40 Score=348.00 Aligned_cols=367 Identities=15% Similarity=0.135 Sum_probs=317.8
Q ss_pred CHHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCcHHHHH-hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh-
Q 009184 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS- 149 (541)
Q Consensus 74 ~l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~- 149 (541)
.++.+++.|.++ |++.+..|++.|..+... .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.+++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 367788888887 899999999999999643 34444555 6899999999999987 9999999999999998652
Q ss_pred ----------------------------hH---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 009184 150 ----------------------------EH---TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (541)
Q Consensus 150 ----------------------------~~---~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~ 198 (541)
.. .+.+++.|++|.|+.++.++++.++++|+|+|+||+++. ++|..++
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence 12 267889999999999999999999999999999999764 5999999
Q ss_pred hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCCh--hhhhchHHHHHHhhccCC-hhHHHHHHHHHHHhccCC
Q 009184 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGT 274 (541)
Q Consensus 199 ~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~l~~~~ 274 (541)
+.|++++|+.+| .+.+...++.|+|+|.+++.+. +...+ ....+++|.|+.+|.++. ......++|+|+||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 5667788999999999999764 22111 123568999999998653 344678999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (541)
++..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+.+.....+...|.++.|+.++.+. +..++++|+|+|+|
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999997765544332379999999999998 99999999999999
Q ss_pred HhcCChHHHHHHHhhchhhHHHHHh-cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184 355 ITAGNREQIQVIMHVHAFSIIAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 433 (541)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 433 (541)
++.+++.+++ .+++ .|+++.|++++.+++.++++.|+|+|.|++.+ +.++..++++.|++++|+.++
T Consensus 692 Lt~~s~~~~~-----------~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 692 ITSVSVKCCE-----------KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLG 759 (810)
T ss_dssp HHHHCHHHHH-----------HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSC
T ss_pred HhCCCHHHHH-----------HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHH
Confidence 9998888888 8998 89999999999999999999999999999984 678899999999999999999
Q ss_pred CCC---ChHHHHHHHHHHHHHHHhhHhh
Q 009184 434 VCP---DPRIVTVCLEGLENILKVGEAE 458 (541)
Q Consensus 434 ~~~---~~~~~~~~l~~L~~l~~~~~~~ 458 (541)
+.+ +++++..++++|.+++++|.-.
T Consensus 760 ~~~d~~~~~i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 760 QLPDDTRAKAREVATQCLAAAERYRIIE 787 (810)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred hCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence 765 6899999999999999887543
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=5e-40 Score=330.59 Aligned_cols=368 Identities=18% Similarity=0.176 Sum_probs=295.7
Q ss_pred hhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcH-HHHHhcCCHHHHHHhhcCCCc-----------HHHHHH
Q 009184 69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDY-----------PQLQFE 136 (541)
Q Consensus 69 ~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~-----------~~i~~~ 136 (541)
..+++.++.++..+.+.|+.. .++++++...++++ ..+++.|++|.|+++|...+. ++++.+
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101 (458)
T ss_dssp -----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence 346678899999999888762 44445444445555 778899999999999997542 799999
Q ss_pred HHHHHHHHhcCChhHHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChh
Q 009184 137 AAWALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPR 192 (541)
Q Consensus 137 a~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~ 192 (541)
|+|+|+||+.+.++.+....+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ ++
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e 180 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE 180 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence 9999999999999999998888888 66777776642 22 445 999999999766 77
Q ss_pred hHHHHHhcCChHHHHHhhcC----------CChhhHHHHHHHHHHhhhcCCCCCChhh--hhchHHHHHHhhccCChhHH
Q 009184 193 CRDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVL 260 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~ 260 (541)
+|+.+.+.|++++|+.+|.. ..++.+++.++|+|.|||.+.+...... ..|++|.|+.+|.+++++++
T Consensus 181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~ 260 (458)
T 3nmz_A 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260 (458)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence 99999999999999999931 2357789999999999998864222222 45679999999999999999
Q ss_pred HHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHHHHH-hcCchHHHHHhhc
Q 009184 261 TDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLS 337 (541)
Q Consensus 261 ~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~ 337 (541)
..++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.
T Consensus 261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~ 340 (458)
T 3nmz_A 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340 (458)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence 9999999999985 566778889999999999975 567889999999999999985655444555 7899999999999
Q ss_pred CCCch---hHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184 338 GNYKK---SIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 338 ~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 411 (541)
+..+. .+++.|+|+|.|++. ++++..+ .+.+.|+++.|+.+|.+++.+++++|+|+|.|++.+
T Consensus 341 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~-----------~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ-----------ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 409 (458)
T ss_dssp CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS
T ss_pred CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH-----------HHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence 87222 489999999999997 7888888 899999999999999999999999999999999874
Q ss_pred CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 412 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 412 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
++++...+++.|++++|+.+|.++++.++..++++|.+|+...
T Consensus 410 -~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 410 -NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp -CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 6888999999999999999999999999999999999999754
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=9e-39 Score=327.04 Aligned_cols=365 Identities=19% Similarity=0.209 Sum_probs=310.3
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
.+|.|+.+|++++ ++++..|+++|.+++.+++..+..+++.|++|.|+++|.++++.+++.|+|+|.||+.++++.+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 999999999999999888888889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc--------c--------CChhHH
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL 260 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--------~--------~d~~v~ 260 (541)
+.+.|++++|+.+|..+.++.+++.++|+|+||+.+......... |++|.|+.++. + .+.++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995478899999999999999998443333444 99999999993 2 246677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcC------------------
Q 009184 261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG------------------ 315 (541)
Q Consensus 261 ~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~------------------ 315 (541)
..++|+|++++.. ++....+.+. |+++.|+.+|.+ .+..+...++.+|.|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677888887 999999999975 4567888899889888631
Q ss_pred --------------------------------CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH--
Q 009184 316 --------------------------------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-- 361 (541)
Q Consensus 316 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 361 (541)
.+...+.+++.|+++.|+.+|.+..++.++..|+|+|+|+++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1123345667788999999998775789999999999999986533
Q ss_pred -HH-HHHHhhchhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCCh
Q 009184 362 -QI-QVIMHVHAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP 438 (541)
Q Consensus 362 -~~-~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~ 438 (541)
.+ + .++ +.|++|.|+++|.+++.+++++|+|+|.|++.. .....++..|++++|+++|...++
T Consensus 320 ~~~~~-----------~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 320 SGMSQ-----------LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTG 385 (457)
T ss_dssp HHHHH-----------HHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCS
T ss_pred HHHHH-----------HHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCC
Confidence 22 3 344 689999999999999999999999999999874 244566677899999999998653
Q ss_pred ------HHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCC
Q 009184 439 ------RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 439 ------~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~i~~~a~~il~~~~~~~~ 509 (541)
+++..++.+|.+++..++. +...+.++||++.|.+|+.|. +++++..|.++|..||...+
T Consensus 386 ~~~~~~~v~~~~l~~l~ni~~~~~~-----------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 386 NTSNSEDILSSACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp CSTTHHHHHHHHHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 6888999999999865433 577888999999999999999 99999999999999997543
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=7.7e-38 Score=326.94 Aligned_cols=367 Identities=25% Similarity=0.375 Sum_probs=325.2
Q ss_pred cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 72 ~~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
.+.+|.+++.|.+ +++.++..|+++|.+++++. ......+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence 4689999999975 56899999999999999764 556778899999999999999998 99999999999999999999
Q ss_pred HHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184 151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~ 225 (541)
.+..+++.|+++.|+.+|..++ ..+...++|+|++++.+...........++++.|+.++ .+.++.++..++|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 9999999999999999998643 56788999999999987655555555567899999999 78899999999999
Q ss_pred HHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHH
Q 009184 226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (541)
Q Consensus 226 L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~ 304 (541)
|++++.+.+. .......+++|.|+.+|.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 9999987532 233345789999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcH
Q 009184 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANII 383 (541)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l 383 (541)
|+++|+|++.++..+...+++.|+++.|+.+|.++ +..++++|+|+|+|++. ++++++. .+++.|++
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~-----------~l~~~g~i 422 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIV-----------YLVHCGII 422 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHH-----------HHHHTTCH
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHH-----------HHHHCcCH
Confidence 99999999999999999999999999999999999 99999999999999997 6788888 89999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhccC----CCHHH-HHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 384 GPLVALLENAEFDIKKEAAWAISNATSG----GTHEQ-IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 384 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~----~~~~~-~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
+.|+.+|.+.+++++..++++|.|+... +..+. ...+.+.|+++.|..+..+++.++...+..+|...+.
T Consensus 423 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 423 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999742 23333 4445578999999999999999999999988887764
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.2e-38 Score=327.07 Aligned_cols=368 Identities=26% Similarity=0.377 Sum_probs=324.6
Q ss_pred cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 72 ~~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
.+.+|.|+++|.+ +++.+|..|+++|.+++++. .+..+.+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 3679999999985 56899999999999999864 667788999999999999999988 99999999999999998999
Q ss_pred HHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184 151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~ 225 (541)
.+..+.+.|+++.|+.++..++ ..+...++|+++|++.............++++.|+.++ .+.++.++..++|+
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHH
Confidence 9999999999999999998743 46788999999999987654445555567899999999 78889999999999
Q ss_pred HHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHH
Q 009184 226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (541)
Q Consensus 226 L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~ 304 (541)
|++|+.+.+. .......+++|.|+.+|.+.+..++..++++|++++..++.....+++.|+++.|+.+|.+++..++..
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence 9999987532 223345789999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcH
Q 009184 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANII 383 (541)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l 383 (541)
|+++|+|++.++..+...+++.|+++.|+.++.+. +..++++|+|+|+|++. ++.+++. .+++.|++
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~-----------~L~~~g~i 403 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIV-----------YLVHCGII 403 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHH-----------HHHHTTCH
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHH-----------HHHHCCCH
Confidence 99999999999999999999999999999999999 99999999999999998 6778888 89999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhccC----CCHH-HHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 384 GPLVALLENAEFDIKKEAAWAISNATSG----GTHE-QIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 384 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~----~~~~-~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
+.|+.+|.+.+++++..++++|.|++.. +..+ ....+.+.|+++.|-.+..+++.++...+..+|.+.+..
T Consensus 404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999752 2333 344455789999999999999999999999888877643
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.1e-36 Score=319.47 Aligned_cols=402 Identities=18% Similarity=0.204 Sum_probs=341.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+.+|.+++.|.++++.++..|++.|.++.... ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 68999999999999999999999999998764 455667778999999999999987 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
..+.+.|+++.|+.++.+ .....+..++.+|.+++.. +..+..+.+.|+++.++.++ .+.+..+++.++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 999999999999999976 4567778899999999964 45788889999999999999 66689999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV 309 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L 309 (541)
..+.. ....+++|.|+.++.+++++++..++|+|++++..+++....+.+.|+++.|+.+|.+ .++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 2346899999999999999999999999999998888788889999999999999965 3478999999999
Q ss_pred hHhhcCCch---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184 310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386 (541)
Q Consensus 310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L 386 (541)
+|++.+.+. ....+.+.|+++.|+.+|.++.++.++..++|+|+|++.+... .. .+.+.|+++.|
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~-----------~~~~~~~i~~L 402 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HA-----------PLREQGAIPRL 402 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HH-----------HHHHTTHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hH-----------HHHHcCCHHHH
Confidence 999886543 3457788999999999999883469999999999999986444 46 88899999999
Q ss_pred HHHhhcCchhHHHHHHHHHHH--hccCC------------------CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHH
Q 009184 387 VALLENAEFDIKKEAAWAISN--ATSGG------------------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 446 (541)
Q Consensus 387 ~~~l~~~~~~v~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~ 446 (541)
+.++.+++++++++|+|++.| +..++ .++....+.+.|+++.|+.++.+++++++..+.+
T Consensus 403 ~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~ 482 (529)
T 1jdh_A 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482 (529)
T ss_dssp HHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHH
Confidence 999999889999988888877 33322 2344566788999999999999999999999999
Q ss_pred HHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184 447 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 504 (541)
Q Consensus 447 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~ 504 (541)
+|.++... +.++..+.+.||++.|..|+.|++++|+..|..++.++
T Consensus 483 ~l~~l~~~------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 483 VLCELAQD------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTS------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcC------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99997632 12577889999999999999999999999999999865
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=323.07 Aligned_cols=405 Identities=18% Similarity=0.219 Sum_probs=343.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+.++.+++.|.++++.++..|+++|.++++.. ......+++.|++|.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 57899999999999999999999999999864 556677788999999999999987 8899999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ ...+..+++.++|+|.+++.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999874 477889999999999964 45888999999999999999 66789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV 309 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L 309 (541)
..+.. ....+++|.|+.++.+.+++++..++|+|++++..+......+.+.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 76332 34468999999999999999999999999999998888888899999999999999763 378999999999
Q ss_pred hHhhcCCch--h-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184 310 GNIVTGDDM--Q-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386 (541)
Q Consensus 310 ~nl~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L 386 (541)
+|++..... . ...+++.|+++.|+.+|.+..++.++++|+|+|+|++.+...+ + .+++.|+++.|
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~-----------~i~~~~~i~~L 399 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-A-----------PLREQGAIPRL 399 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-H-----------HHHHTTHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-H-----------HHHHcCCHHHH
Confidence 999975442 2 3347789999999999998744799999999999999865544 6 88899999999
Q ss_pred HHHhhcCchhHHHHHHHHH----------------------HHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184 387 VALLENAEFDIKKEAAWAI----------------------SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 444 (541)
Q Consensus 387 ~~~l~~~~~~v~~~a~~aL----------------------~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~ 444 (541)
++++.+.++++|++|+|++ .+++. +......+.+.|+++.|+.+|.+.+++++..+
T Consensus 400 v~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a 477 (644)
T 2z6h_A 400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 477 (644)
T ss_dssp HHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHH
Confidence 9999886666555555554 44544 23444577789999999999999999999999
Q ss_pred HHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHH------------------HHH--HHHHHHHh
Q 009184 445 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI------------------YEK--SVKLLETY 504 (541)
Q Consensus 445 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i------------------~~~--a~~il~~~ 504 (541)
+.+|.++.... .++..|.+.|+++.|..++.+++++| |.. +..+++.|
T Consensus 478 ~~aL~~l~~~~------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~ 545 (644)
T 2z6h_A 478 AGVLCELAQDK------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 545 (644)
T ss_dssp HHHHHHHHTSH------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCH------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHH
Confidence 99999987431 25778899999999999999999999 544 67799999
Q ss_pred CCCCC
Q 009184 505 WLDDE 509 (541)
Q Consensus 505 ~~~~~ 509 (541)
|..+.
T Consensus 546 ~~~~~ 550 (644)
T 2z6h_A 546 FRTEP 550 (644)
T ss_dssp SCCSC
T ss_pred HhCCC
Confidence 97763
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.4e-37 Score=325.16 Aligned_cols=404 Identities=15% Similarity=0.134 Sum_probs=332.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCC-CCcHHHHHh---cCCHHHHHHhhcCC--CcHHHHHHHHHHHHHHhcC
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIR---SGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASG 147 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~i~---~g~i~~Lv~lL~~~--~~~~i~~~a~~~L~~l~~~ 147 (541)
++|.++..++++++.++..|+..|+++.+... ++....+-+ ..+++.|+++|.++ + ++++..|+|+|.+++.+
T Consensus 331 gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~~ 409 (810)
T 3now_A 331 GVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTLD 409 (810)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhCC
Confidence 35888888888888889999999999975322 111111111 23478899999988 5 89999999999999995
Q ss_pred ChhHHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-----------------------------hhH---
Q 009184 148 TSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-----------------------------RCR--- 194 (541)
Q Consensus 148 ~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----------------------------~~r--- 194 (541)
++.+..++ +.|++|.|+.+|+++++.++..|+|+|+||+.+.+ ..+
T Consensus 410 -~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~ 488 (810)
T 3now_A 410 -AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488 (810)
T ss_dssp -HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred -cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence 55555555 67999999999999999999999999999997541 122
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
+.+++.|+++.|+.++ .++++.++..++|+|.|++.+.+........|++|.|+.+|.++++..+..|+|+|++++...
T Consensus 489 ~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 489 TVLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Confidence 5778899999999999 778999999999999999976555555566899999999999999999999999999998543
Q ss_pred hHHHHH--HHHhCcHHHHHHhhCCCCh-hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184 275 NDKIQA--VIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (541)
Q Consensus 275 ~~~~~~--~~~~g~l~~L~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (541)
+..... ....|+++.|+.+|.++.. ..+..|+++|+|++.+++...+.+++.|+++.|+.+|.+. ++.++..|+|+
T Consensus 568 ~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~ 646 (810)
T 3now_A 568 NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQC 646 (810)
T ss_dssp CHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHH
T ss_pred ChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHH
Confidence 321110 0113689999999986533 3456899999999999888888899999999999999998 99999999999
Q ss_pred HHHHhcCChHHHHHHHhhchhhHHHHHh-cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHH
Q 009184 352 VSNITAGNREQIQVIMHVHAFSIIAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPL 429 (541)
Q Consensus 352 L~nl~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L 429 (541)
|+|++.+. +... .+++ .|.++.|+.++.+++..++.+|+|+|.|++.+ ++..++.+++ .|++++|
T Consensus 647 L~NLa~~~-~~~~-----------~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 647 LCNLVMSE-DVIK-----------MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDIL 713 (810)
T ss_dssp HHHHTTSH-HHHH-----------HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHH
T ss_pred HHHHhCCh-HHHH-----------HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHH
Confidence 99999864 4455 5554 79999999999999999999999999999985 5678888898 8999999
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC---CCHHHHHHHHHHHHHhC
Q 009184 430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH---DNAEIYEKSVKLLETYW 505 (541)
Q Consensus 430 ~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~---~~~~i~~~a~~il~~~~ 505 (541)
+.++.+++.+++..++++|.++...+.. ....+.+.|+++.|..|... .+.++++.|...|+...
T Consensus 714 v~LL~s~d~~vq~~A~~aL~NL~~~s~e-----------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 714 HTLIANPSPAVQHRGIVIILNMINAGEE-----------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTTCHH-----------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHhCCHH-----------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999975432 36778889999999999543 48999999999888765
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.6e-37 Score=313.71 Aligned_cols=361 Identities=15% Similarity=0.173 Sum_probs=302.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc-HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP-IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
.+|.++..|.++++..+..|++.|++++.. ++. ...+++.|++|.|+++|++++ +.++..|+|+|.||+.++++++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k 79 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 689999999999999999999999998754 444 458889999999999999988 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc--------CC-------Chh
Q 009184 153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKL 216 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~--------~~-------~~~ 216 (541)
..+++.|++|.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.+|. .. .+.
T Consensus 80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccH
Confidence 99999999999999999 78999999999999999988 568888888 99999999992 11 356
Q ss_pred hHHHHHHHHHHhhhcCCCCCChhhhh-chHHHHHHhhcc------CChhHHHHHHHHHHHhccCC---------------
Q 009184 217 SMLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHS------NDDEVLTDACWALSYLSDGT--------------- 274 (541)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~--------------- 274 (541)
.+++.++|+|+|||.+.......... |++|.|+.+|.+ .+..+...++++|.+++...
T Consensus 158 ~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 78889999999999873222222233 999999999985 46678889999998886321
Q ss_pred -----------------------------------hHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCch
Q 009184 275 -----------------------------------NDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM 318 (541)
Q Consensus 275 -----------------------------------~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~ 318 (541)
+...+.+.+.|+++.++.+|.+ .++.+++.|+++|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 1112234556778899999965 4688999999999999987754
Q ss_pred hH----HHHH-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC
Q 009184 319 QT----QCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA 393 (541)
Q Consensus 319 ~~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~ 393 (541)
.. +.++ +.|+++.|+.+|.++ +.+++++|+|+|+|++.+ + ..+ .++..|+++.|+++|..+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~-~~~-----------~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-P-LLH-----------RVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-G-GGH-----------HHHHHHTHHHHHHTTTSC
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-H-HHH-----------HHHHHhhhHHHHHhccCC
Confidence 32 3344 689999999999999 999999999999999885 3 445 667778999999999986
Q ss_pred ch------hHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHHh
Q 009184 394 EF------DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKV 454 (541)
Q Consensus 394 ~~------~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~ 454 (541)
++ ++...++++|.|++.. +++....+.+.|+++.|+.++.++ ++++...+.++|.+++..
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 43 6888999999999875 557788888999999999999998 899999999999988743
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.4e-35 Score=308.92 Aligned_cols=367 Identities=25% Similarity=0.345 Sum_probs=324.7
Q ss_pred cCCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 72 LENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 72 ~~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
.+.+|.+++.|.++ ++.++..|+++|.++++.. ......++..|+++.|+.+|.+++ +.++..|+|+|++++..+++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCcc
Confidence 36899999999987 8999999999999998753 445667888999999999999887 99999999999999998889
Q ss_pred HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 229 (541)
.+..+...|+++.|+.++.+.++.++..++|+|++++.+. +.. ......++++.|+.++ .+.++.++..++|+|.+|
T Consensus 207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L 284 (530)
T 1wa5_B 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP-DWSVVSQALPTLAKLI-YSMDTETLVDACWAISYL 284 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC-CHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 433 3445578999999999 677899999999999999
Q ss_pred hcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184 230 CRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (541)
Q Consensus 230 ~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 308 (541)
+...+. .......+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 285 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~a 364 (530)
T 1wa5_B 285 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364 (530)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 987532 2222335899999999999999999999999999998888888888999999999999999999999999999
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-Ch--HHHHHHHhhchhhHHHHHhcCcHHH
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR--EQIQVIMHVHAFSIIAVIEANIIGP 385 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~~~~~~~~~~~~l~~~~~l~~ 385 (541)
|++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ .+ +... .+++.|+++.
T Consensus 365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~-----------~l~~~~~l~~ 432 (530)
T 1wa5_B 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIR-----------YLVSQGCIKP 432 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHH-----------HHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHH-----------HHHHCCCHHH
Confidence 9999998888888888999999999999988 899999999999999984 44 6777 8889999999
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 386 LVALLENAEFDIKKEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 386 L~~~l~~~~~~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
|+.++.+++++++..|+++|.+++..+.. .....+.+.|+++.|..++.++++++...+..+|.+++..
T Consensus 433 L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 433 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999874322 2456677889999999999999999999999999988754
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=9.4e-36 Score=305.83 Aligned_cols=366 Identities=25% Similarity=0.321 Sum_probs=322.5
Q ss_pred CCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 73 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
+.+|.+++.|.++ ++.++..|+++|.++.... .+....+++.|++|.|+++|++++ +.++..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4689999999998 8999999999999998753 455667788999999999999987 999999999999999988899
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 229 (541)
+..+++.|+++.|+.++.+ ++..++..++|+|++++.+. +..+.... .++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 43333333 67899999999 677899999999999999
Q ss_pred hcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184 230 CRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (541)
Q Consensus 230 ~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 308 (541)
+...+ ........+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98752 22233346899999999999999999999999999999888777778888999999999999999999999999
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
|++++.+++...+.+++.|+++.|+.+|.++ ++.+|..|+|+|+|++.+ +++..+ .+++.|+++.|+
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~-----------~l~~~~~i~~L~ 367 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIK-----------YLVELGCIKPLC 367 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHH-----------HHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHH-----------HHHHCCCHHHHH
Confidence 9999998888888888899999999999988 899999999999999985 677888 888999999999
Q ss_pred HHhhcCchhHHHHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 388 ALLENAEFDIKKEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 388 ~~l~~~~~~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
.++.+++++++..|+++|.+++..+.. .....+.+.|+++.|..++.+++.+++..++.+|.+++..
T Consensus 368 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 368 DLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 999999999999999999999874322 2345677889999999999988999999999999998853
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.3e-35 Score=309.12 Aligned_cols=366 Identities=24% Similarity=0.321 Sum_probs=325.4
Q ss_pred CCHHHHHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 73 ~~l~~l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
+.+|.+++.|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++|+.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 68999999999877 999999999999998753 456677888999999999999987 999999999999999988999
Q ss_pred HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184 152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 230 (541)
+..+.+.|+++.|+.++ .++++.++..++|+|++++...+.... ....|+++.|+.++ .+.++.++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 568899999999999999987654333 34577899999999 7788999999999999999
Q ss_pred cCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHH
Q 009184 231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT 308 (541)
Q Consensus 231 ~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~ 308 (541)
.+.+.. ......+++|.|+.+|.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 775322 2334468999999999999999999999999999998888888899999999999999988 89999999999
Q ss_pred HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
|+|++.+++.....+++.|+++.|+.+|.+. ++.++..|+|+|+|++.+ +++... .+++.|+++.|+
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~-----------~l~~~~~i~~L~ 420 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIK-----------YLVSEGCIKPLC 420 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHH-----------HHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHH-----------HHHHCCCHHHHH
Confidence 9999998888888899999999999999998 999999999999999985 788888 889999999999
Q ss_pred HHhhcCchhHHHHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 388 ALLENAEFDIKKEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 388 ~~l~~~~~~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
.++..++++++..++++|.+++..+.. .....+.+.|+++.|..+..++++++...+..+|..++..
T Consensus 421 ~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 421 DLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999864322 2466677889999999999999999999999999887754
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.3e-35 Score=301.67 Aligned_cols=364 Identities=18% Similarity=0.192 Sum_probs=302.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC-ChhH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH 151 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~-~~~~ 151 (541)
..+|.+++.|.++++.++..|++.|++++... .+....+++.|+||.|+++|.+++ +.++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 47999999999999999999999999998653 667788889999999999999988 99999999999999986 6999
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-----------------CC
Q 009184 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ 213 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-----------------~~ 213 (541)
+..+++.|+||.|+.+|.+ .+.+++++++++|+|++.. +..+..+.. +++++|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999987 6889999999999999985 457777775 57999999762 12
Q ss_pred ChhhHHHHHHHHHHhhhcCCCC-CChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhccCChHH--------
Q 009184 214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDGTNDK-------- 277 (541)
Q Consensus 214 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~-~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~~~~-------- 277 (541)
.++.++.+++|+|.||+...+. ..... ..|+++.|+.++++ .+...++.|+|+|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3579999999999999987633 22222 35778899999874 46778999999999998652111
Q ss_pred -----------------HHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCCchh----HHHHHhcCchHHHHHh
Q 009184 278 -----------------IQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNL 335 (541)
Q Consensus 278 -----------------~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~----~~~~~~~~~l~~L~~l 335 (541)
...+.+.++++.++.+|. +.++.+++.|+++|.|++.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 111233355678888995 567899999999999999876322 2244567899999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--------chhHHHHHHHHHHH
Q 009184 336 LSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--------EFDIKKEAAWAISN 407 (541)
Q Consensus 336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--------~~~v~~~a~~aL~n 407 (541)
|.++ +..+++.|+|+|+||+.+.. .+ .++..|++|.|+.+|.++ ..+++..|+++|.|
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~-----------~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NK-----------ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CH-----------HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HH-----------HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 9999 89999999999999998643 23 455789999999999876 35789999999999
Q ss_pred hccCCCHHHHHHHHHcCChHHHhhhcCCC--ChHHHHHHHHHHHHHHHhh
Q 009184 408 ATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 408 l~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l~~L~~l~~~~ 455 (541)
++.. +++..+.+.+.|+++.|+.++.+. .+.++..+..+|.++....
T Consensus 430 L~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 430 VIAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HhcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 9975 788899999999999999999986 7889999999999998643
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.3e-33 Score=305.02 Aligned_cols=405 Identities=18% Similarity=0.205 Sum_probs=339.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+.++.+++.|.++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 67899999999999999999999999998763 445566668999999999999987 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
..+.+.|+++.|+.++.+. ....++.++.+|.+++... ..+..+++.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 9999999999999999874 4566778999999999754 4788888999999999999 66788999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CC-hhhHHHHHHHH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-PSVLIPALRTV 309 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~-~~v~~~al~~L 309 (541)
..+. .....++++.|+.+|.+.+++++..++|+|++|+..++.....+++.|+++.|+.+|.+ .+ ..++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 22347899999999999999999999999999999888888889999999999999976 33 48999999999
Q ss_pred hHhhcCCch---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184 310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386 (541)
Q Consensus 310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L 386 (541)
+||+..... ....+...++++.|+.+|.+...+.++++|+|+|+|++.+... .. .+.+.|+++.|
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~-----------~i~~~g~i~~L 535 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HA-----------PLREQGAIPRL 535 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HH-----------HHHHTTHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HH-----------HHHHCCCHHHH
Confidence 999876543 2346778999999999999883459999999999999986444 46 88899999999
Q ss_pred HHHhhcCchhH----------------------HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184 387 VALLENAEFDI----------------------KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 444 (541)
Q Consensus 387 ~~~l~~~~~~v----------------------~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~ 444 (541)
+.+|.++++++ +..++.+|.+++. ++.....+.+.|+++.|+.+|.++++.++..+
T Consensus 536 v~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a 613 (780)
T 2z6g_A 536 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 613 (780)
T ss_dssp HHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence 99998765444 4556666666664 44555667789999999999999999999999
Q ss_pred HHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHH--------------------HHHHHHHh
Q 009184 445 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK--------------------SVKLLETY 504 (541)
Q Consensus 445 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~--------------------a~~il~~~ 504 (541)
+.+|.++... ..++..|.+.|+++.|..|+.+++++|+.. +..++..|
T Consensus 614 ~~aL~~L~~~------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l 681 (780)
T 2z6g_A 614 AGVLCELAQD------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 681 (780)
T ss_dssp HHHHHHHHTS------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHH
Confidence 9999998732 125778899999999999999999999544 56677888
Q ss_pred CCCCC
Q 009184 505 WLDDE 509 (541)
Q Consensus 505 ~~~~~ 509 (541)
|..+.
T Consensus 682 ~~~~~ 686 (780)
T 2z6g_A 682 FRTEP 686 (780)
T ss_dssp -----
T ss_pred HhCCC
Confidence 86553
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2e-34 Score=295.96 Aligned_cols=368 Identities=18% Similarity=0.206 Sum_probs=303.7
Q ss_pred hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Chh
Q 009184 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPR 192 (541)
Q Consensus 114 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~ 192 (541)
..+.+|.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+||.|+++|.++++.+++.|+|+|.||+.. +++
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3678999999999988 99999999999999998999999999999999999999999999999999999999985 678
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc------------------c
Q 009184 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------------------S 254 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~------------------~ 254 (541)
.+..+.+.|++++|+.+|....+..+++.++++|++|+..... ......+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999996557788999999999999986433 33334678999999762 2
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCCch---------
Q 009184 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDM--------- 318 (541)
Q Consensus 255 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~--------- 318 (541)
.+++++..++++|.+|+..+++..+.+.+. |+++.|+.++.+ .+...++.|+++|.||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367899999999999998887766777775 777899999864 4667899999999999875311
Q ss_pred ----------------hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH---HHHHHHhhchhhHHHHHh
Q 009184 319 ----------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIAVIE 379 (541)
Q Consensus 319 ----------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~~~~~~l~~ 379 (541)
....+.+.++++.|+.+|....++.+++.|+|+|.|++.+... .++. .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~----------~v~~ 353 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS----------ALRQ 353 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH----------HHTS
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH----------HHHH
Confidence 1122334456788899996544899999999999999986522 2230 3446
Q ss_pred cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC--------ChHHHHHHHHHHHHH
Q 009184 380 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--------DPRIVTVCLEGLENI 451 (541)
Q Consensus 380 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--------~~~~~~~~l~~L~~l 451 (541)
.+++|.|+.+|.+++.+++..|+|+|.|++.+... +..+..|+++.|+.+|.+. ..+++..++.+|.+|
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999986432 2345789999999999876 357888999999999
Q ss_pred HHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCC--CHHHHHHHHHHHHHhCCC
Q 009184 452 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~--~~~i~~~a~~il~~~~~~ 507 (541)
+...+.. ...+.+.|++..|..|..+. .+.+.+.|..+|..++..
T Consensus 431 ~a~~~~~-----------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 431 IAENLEA-----------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HTTCHHH-----------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred hcCCHHH-----------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 8655442 55677899999999998764 899999999999998864
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=284.24 Aligned_cols=328 Identities=17% Similarity=0.172 Sum_probs=276.7
Q ss_pred hhcCCHHHHHHhhcCC------------CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCH----------HHHHHhhcC
Q 009184 70 KKLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLR 127 (541)
Q Consensus 70 ~~~~~l~~l~~~L~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i----------~~Lv~lL~~ 127 (541)
.+.+.+|.++++|+.. +++.+.+|+++|.+++++. .+..+...+.+++ +.+++++.+
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 3458999999999963 3799999999999999986 5666666677777 777888876
Q ss_pred CC-cHH-----HHH-------HHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHH
Q 009184 128 ED-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWAL 183 (541)
Q Consensus 128 ~~-~~~-----i~~-------~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L 183 (541)
.. +.+ +++ +|+|+|.|++. ++++|+.+++.|+++.|+.+|.. .++.+++.|+|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL 224 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence 52 112 433 99999999977 59999999999999999999942 3478999999999
Q ss_pred HHhhCCChhhHHHHH-hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC--CCCChhhhhchHHHHHHhh-ccCChhH
Q 009184 184 GNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEV 259 (541)
Q Consensus 184 ~nl~~~~~~~r~~i~-~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v 259 (541)
.|||.+++..+..+. ..|++++|+.+| .+.+++++..++|+|.||+... .........|++|.|+.+| .+.+..+
T Consensus 225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v 303 (458)
T 3nmz_A 225 TNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303 (458)
T ss_dssp HHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred HHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence 999988876777665 456699999999 6788999999999999999852 2233444579999999975 5578899
Q ss_pred HHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCh----hhHHHHHHHHhHhhc---CCchhHHHHHhcCchHH
Q 009184 260 LTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPC 331 (541)
Q Consensus 260 ~~~a~~~L~~l~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~ 331 (541)
+..++.+|.+|+...++....+. ..|+++.|+.+|.+.+. .++..|+++|.|++. +++...+.+++.|+++.
T Consensus 304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~ 383 (458)
T 3nmz_A 304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383 (458)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence 99999999999985544444455 78999999999987654 489999999999997 78888889999999999
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184 332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 332 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 411 (541)
|+.+|.+. +..++++|+|+|+|++.+++++.+ .+++.|+++.|+.++.+++.++++.|+|+|.|++..
T Consensus 384 Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~-----------~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 384 LLQHLKSH-SLTIVSNACGTLWNLSARNPKDQE-----------ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHH-----------HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHH-----------HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999998 899999999999999988899998 999999999999999999999999999999999986
Q ss_pred C
Q 009184 412 G 412 (541)
Q Consensus 412 ~ 412 (541)
.
T Consensus 452 ~ 452 (458)
T 3nmz_A 452 R 452 (458)
T ss_dssp C
T ss_pred C
Confidence 3
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.1e-33 Score=290.48 Aligned_cols=403 Identities=17% Similarity=0.144 Sum_probs=337.5
Q ss_pred CCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 73 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
+.++.+++.|.+ +++..+..|+..|+++... ..+...+.+.|++|.|+++|++++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468899999975 4899999999999998654 446778889999999999999988 999999999999999977788
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
+..+.+.|++|.|+.++.++++.++..++.+|.+++...++.+..+.+.|+++.++.++....+...+..++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888999999999999999999766677788889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
...........++++.|+.++.+.+++++..++|+|.+++....... ...|+++.|+.++.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 65444444457899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCChH---HHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
++.+++.....+.+.|+++.|+.+|.+. .++.++..|+++|+|++.+++. ... .+.+.|+++.|+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-----------~i~~~~~i~~L~ 361 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN-----------AVRLHYGLPVVV 361 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH-----------HHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH-----------HHHHcCChhHHH
Confidence 9998888888899999999999999763 1478999999999999986433 345 677889999999
Q ss_pred HHhhcCc-hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHH--------------------
Q 009184 388 ALLENAE-FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE-------------------- 446 (541)
Q Consensus 388 ~~l~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~-------------------- 446 (541)
.++.+++ +.++..++|+|.|++.+. .....+.+.|+++.|+.++.+++++++..+.+
T Consensus 362 ~lL~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~ 439 (529)
T 1jdh_A 362 KLLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439 (529)
T ss_dssp HTTSTTCCHHHHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHH
Confidence 9999876 599999999999999743 33467889999999999998766666654444
Q ss_pred --HHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 447 --GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 447 --~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
+|.++.... ..+..+.+.|+++.|..+..++++++...|...+..+..
T Consensus 440 ~~al~~L~~~~------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 440 TGALHILARDV------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp HHHHHHHTTSH------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCc------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 444444321 124567779999999999999999999999998888753
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-32 Score=288.59 Aligned_cols=404 Identities=17% Similarity=0.161 Sum_probs=341.3
Q ss_pred CCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 73 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
+.++.+++.|.++ ++.++..|+..|+++... ......+.+.|+++.|+++|++++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 3589999999875 899999999999987653 446778888999999999999988 999999999999999977788
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
+..+.+.|+++.|+.+|.++++.++..++.+|.+++...++.+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999987888899999999999999999666667888999999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.++++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6554444555789999999999999999999999999999764331 1123789999999999999999999999999
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCChH--HHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNRE--QIQVIMHVHAFSIIAVIEANIIGPLVA 388 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~L~~ 388 (541)
++.+++.....+.+.|+++.|+.+|.+.. .+.++..|+++|+|++...++ ..+. .+.+.|+++.|++
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~----------~v~~~~~l~~L~~ 359 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN----------AVRLHYGLPVVVK 359 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH----------HHHHTTHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH----------HHHHccChHHHHH
Confidence 99988888888999999999999998642 379999999999999975332 2330 4778899999999
Q ss_pred HhhcCc-hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC----------------------hHHHHHHH
Q 009184 389 LLENAE-FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCL 445 (541)
Q Consensus 389 ~l~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~----------------------~~~~~~~l 445 (541)
+|.+++ +.+++.|+|+|.|++.+. .....+.+.|+++.|+.++...+ .+++..++
T Consensus 360 lL~~~~~~~v~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~ 437 (644)
T 2z6h_A 360 LLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 437 (644)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHH
T ss_pred HhCccCchHHHHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHH
Confidence 999875 799999999999999853 33477889999999999987633 45667778
Q ss_pred HHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 446 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 446 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
.+|.++..... .+..+.+.|++..|..+..+.++++...|...+..+..
T Consensus 438 ~aL~~La~~~~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 438 GALHILARDVH------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHHHHHTTSHH------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHH------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88888775432 24567779999999999999999999999988777653
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.7e-31 Score=290.40 Aligned_cols=402 Identities=17% Similarity=0.162 Sum_probs=338.1
Q ss_pred CCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 73 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
+.++.+++.|.++ ++.++..|+.+|+++... ..+...+.+.|+++.|+.+|++++ +.++..|+++|.+|+...++.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 3688899999754 899999999999997654 445677888999999999999988 999999999999999987888
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++...++.+..+...|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888899989999999999999666666677888999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544444445789999999999999999999999999999765431 1123689999999999999999999999999
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCChH---HHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
++.+++.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+...++ ... .+...++++.|+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~-----------~v~~~~~l~~L~ 494 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN-----------AVRLHYGLPVVV 494 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH-----------HHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH-----------HHHHcCCHHHHH
Confidence 999888888889999999999999986323 48999999999999875443 234 667889999999
Q ss_pred HHhhcCch-hHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC----------------------hHHHHHH
Q 009184 388 ALLENAEF-DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVC 444 (541)
Q Consensus 388 ~~l~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~----------------------~~~~~~~ 444 (541)
.+|.+++. .++..|+|+|+|++.+ +.....+.+.|+++.|+.+|.+.+ .+++..+
T Consensus 495 ~lL~~~~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a 572 (780)
T 2z6g_A 495 KLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572 (780)
T ss_dssp HTTSTTCCHHHHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHH
Confidence 99998764 9999999999999973 444577889999999999987543 3466677
Q ss_pred HHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184 445 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 505 (541)
Q Consensus 445 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~ 505 (541)
+.+|.+|.... . .+..+.+.|++..|..+..+.++++...|...|..+.
T Consensus 573 ~~aL~~La~~~-~-----------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 573 TGALHILARDI-H-----------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp HHHHHHHTTSH-H-----------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCh-h-----------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 78888776321 1 2456778999999999999999999999988777654
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=9.8e-30 Score=248.58 Aligned_cols=274 Identities=19% Similarity=0.176 Sum_probs=236.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC----------CChhhHHHHHHHHHHhhhcCCC-CCCh
Q 009184 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKP-QPPF 238 (541)
Q Consensus 170 ~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~ 238 (541)
.+......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.++|+|.|||.+.+ ....
T Consensus 43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456667899999999988 5799999999999999999931 2357899999999999998863 3222
Q ss_pred h-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 009184 239 D-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 239 ~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~ 315 (541)
. ...|++|.|+.+|.+++++++..++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.++.++..|+.+|+|++..
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 2 2356799999999999999999999999999975 556778889999999999975 667889999999999999986
Q ss_pred CchhHHHHH-hcCchHHHHHhhcCCCch----hHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 316 DDMQTQCVI-EYQALPCLLNLLSGNYKK----SIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 316 ~~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
++.....+. ..|+++.|+.+|.+. ++ .+++.|+|+|.|++. ++++..+ .+.+.|+++.|+
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~-----------~i~~~g~i~~Lv 269 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQ-----------ILRENNCLQTLL 269 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH-----------HHHTTTHHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHH-----------HHHHcCCHHHHH
Confidence 665555555 789999999999876 43 589999999999997 6788888 899999999999
Q ss_pred HHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184 388 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 388 ~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~ 457 (541)
.+|.+++.+++++|+|+|.|++.. ++++...+++.|+++.|+++|.+++++++..++++|.+|+...+.
T Consensus 270 ~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 270 QHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999864 678889999999999999999999999999999999999976433
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.2e-30 Score=252.04 Aligned_cols=275 Identities=18% Similarity=0.152 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC----------CcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----------DYPQLQFEAAWALTNIASGTSEHTKVVI 156 (541)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~ 156 (541)
...+.+|+++|.++... .+..+.+++.|+++.|+.+|..+ .++.++..|+|+|.|++.+++..+..+.
T Consensus 46 ~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556899999999743 56778899999999999999521 1378999999999999998777887776
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-
Q 009184 157 D-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK- 233 (541)
Q Consensus 157 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~- 233 (541)
. .|+||.|+.+|.++++++++.|+|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++++|+||+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 5 46699999999999999999999999999975 66789999999999999998756778899999999999999843
Q ss_pred CCCChhh-hhchHHHHHHhhccCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 009184 234 PQPPFDQ-VSPALPALAHLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (541)
Q Consensus 234 ~~~~~~~-~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a 305 (541)
....... ..|++|.|+.+|.+.++ +++..++|+|.+++. ..++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 3322333 58999999999987654 589999999999996 677788889999999999999999999999999
Q ss_pred HHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
+++|+|++.+++++.+.+++.|+++.|+.+|.+. ++.+++.|+|+|.|++.+++..++
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999999988888888999999999999999998 999999999999999997776543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=6.2e-27 Score=220.38 Aligned_cols=241 Identities=28% Similarity=0.421 Sum_probs=223.1
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
|.++.|+++|.+++ ++++..|+++|.+++...++.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999998 99999999999999998888999999999999999999999999999999999999999888999
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
.+.+.|+++.++.++ .++++.++..++|+|.+++... .........++++.|+.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6788999999999999999754 33333445789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (541)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88878899999999999999999999999999999999998888888899999999999999998 89999999999999
Q ss_pred HhcCC
Q 009184 355 ITAGN 359 (541)
Q Consensus 355 l~~~~ 359 (541)
++...
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 99853
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=4.2e-27 Score=223.84 Aligned_cols=236 Identities=16% Similarity=0.167 Sum_probs=202.3
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh
Q 009184 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL 335 (541)
Q Consensus 257 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 335 (541)
.+-+..|+..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3467788899999987544 5566888999999999 9999999999999999999999999888899999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHH
Q 009184 336 LSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 415 (541)
Q Consensus 336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~ 415 (541)
|.++.+..+++.|+|+|+|++++++...+ .+.+.|+++.|+.+|.++++.++..|+|+|.+++.+ +++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~-----------~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~ 200 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLL-----------QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPE 200 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGG
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHH-----------HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChH
Confidence 98643789999999999999999888888 899999999999999999999999999999999986 678
Q ss_pred HHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCC-CHHHH
Q 009184 416 QIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIY 494 (541)
Q Consensus 416 ~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~i~ 494 (541)
.+..+++.|+++.|+.+|.+++++++..++.+|.+|+..++......+...+.+..++++ .++.++.++ +.++|
T Consensus 201 ~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~~e~~ 275 (296)
T 1xqr_A 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEYQEEL 275 (296)
T ss_dssp GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGGHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHHHHHH
Confidence 889999999999999999999999999999999999987654432211122446777774 478888776 89999
Q ss_pred HHHHHHHHHhCCCCCC
Q 009184 495 EKSVKLLETYWLDDED 510 (541)
Q Consensus 495 ~~a~~il~~~~~~~~~ 510 (541)
++|..|+++||+++++
T Consensus 276 ~~~~~il~~~f~~~~~ 291 (296)
T 1xqr_A 276 EFCEKLLQTCFSSPAD 291 (296)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999976543
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=5.1e-27 Score=221.13 Aligned_cols=239 Identities=36% Similarity=0.551 Sum_probs=220.1
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
..++.++.+|.+++ ++++..|+++|.++.+..++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45889999999998 99999999999887776778888999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
.+.+.|+++.|+.+| .++++.++..++|+|.+++.+.+.. ......+++|.|+.++.++++.++..++|+|++++..+
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886444 44556789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (541)
+.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.+. ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred Hhc
Q 009184 355 ITA 357 (541)
Q Consensus 355 l~~ 357 (541)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=3e-26 Score=215.68 Aligned_cols=241 Identities=27% Similarity=0.415 Sum_probs=222.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCC
Q 009184 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237 (541)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 237 (541)
|.++.|+.+|.+++++++..|+++|++++...+..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++... ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5689999999999999999999999999998888899999999999999999 6778999999999999999874 3334
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (541)
Q Consensus 238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 317 (541)
.....++++.++.++.+++++++..++|+|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+.+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 44457899999999999999999999999999998888888889999999999999999999999999999999999888
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI 397 (541)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 397 (541)
.....+.+.|+++.|+.++.++ ++.++..|+|+|+|++.+++...+ .+.+.|+++.|++++.++++++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~-----------~l~~~~~i~~L~~ll~~~~~~v 228 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIK-----------AIVDAGGVEVLQKLLTSTDSEV 228 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHH-----------HHHHTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHCCCHHHHHHHHCCCcHHH
Confidence 8878899999999999999988 899999999999999998888888 8999999999999999999999
Q ss_pred HHHHHHHHHHhccCC
Q 009184 398 KKEAAWAISNATSGG 412 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~ 412 (541)
+..|+++|.|+....
T Consensus 229 ~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 229 QKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999998654
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.9e-26 Score=217.17 Aligned_cols=239 Identities=35% Similarity=0.566 Sum_probs=217.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
..++.+++.|++++++++..|++.|+++++. ..+..+.+++.|+++.|+++|++++ +.++..|+++|.+++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 4689999999999999999999999998886 3677888999999999999999998 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|.+++.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988875448888999999999999 677899999999999999987
Q ss_pred CCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 233 ~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
.+. .......+++|.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 522 2233447899999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhc
Q 009184 312 IVT 314 (541)
Q Consensus 312 l~~ 314 (541)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.8e-24 Score=220.56 Aligned_cols=322 Identities=10% Similarity=0.120 Sum_probs=256.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHH-hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh--
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE-- 150 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~-- 150 (541)
..+.+.+.|.+++.+.+..|++.|..+... ....+.+. +.|+++.|+++++...+..+.+.++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 456777788887777789999999988532 34444555 4678999999999633378999999999999984331
Q ss_pred ------------------------------------HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184 151 ------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (541)
Q Consensus 151 ------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 194 (541)
.+..+.+.|++|.|+.++.++++.+++.++|+|.|++.+ +.+|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 355677899999999999999999999999999999977 5699
Q ss_pred HHHHhcCChHHHHHhhcCCChh--hHHHHHHHHHHhhhcCC-CCCCh--hhhhchHHHHHHhhcc-CCh-----------
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHS-NDD----------- 257 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~--~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~lL~~-~d~----------- 257 (541)
..+++.|++++|+.++...+.. ..+..|+++|.+++... |...+ ....+++|.|+.+|.. +..
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999544333 27899999999998653 21111 0114899999999983 221
Q ss_pred --hHHHHHHHHHHHhccCCh----HHHHHHHHh-CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhc----
Q 009184 258 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---- 326 (541)
Q Consensus 258 --~v~~~a~~~L~~l~~~~~----~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---- 326 (541)
--...|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 126799999999998762 334557774 999999999999999999999999999998555322234322
Q ss_pred --CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc-CcHHHHHHHhhc--CchhHHHHH
Q 009184 327 --QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA-NIIGPLVALLEN--AEFDIKKEA 401 (541)
Q Consensus 327 --~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~-~~l~~L~~~l~~--~~~~v~~~a 401 (541)
+.++.|+.++... +..+|.+|+|+|+|++..++...+ .+++. ++++.++.++.. ++.+++..+
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~-----------~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~ 719 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAK-----------ELLTKKELIENAIQVFADQIDDIELRQRL 719 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHH-----------HHTTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHH-----------HHHHccccHHHHHHHHhccCCCHHHHHHH
Confidence 2388999999988 999999999999999887788777 88876 799999999999 899999999
Q ss_pred HHHHHHhcc
Q 009184 402 AWAISNATS 410 (541)
Q Consensus 402 ~~aL~nl~~ 410 (541)
+.++.|++.
T Consensus 720 ~~~l~NL~~ 728 (778)
T 3opb_A 720 LMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999996
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.6e-23 Score=215.14 Aligned_cols=385 Identities=13% Similarity=0.103 Sum_probs=291.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.++.+...+++ ..++..|+..|+++.+....... .+ ..+.+.++++|.+++ .+-+..|++.|..++. .++.+.
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~-si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe 369 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCI-NL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKI 369 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTC-CH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcC-cH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHH
Confidence 34555666654 57888999999998876422211 11 126788899998876 6669999999999998 477777
Q ss_pred HHHh-CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh--------------------------------------h
Q 009184 154 VVID-HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR--------------------------------------C 193 (541)
Q Consensus 154 ~i~~-~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~ 193 (541)
.+.+ .|+++.|+.+++. .+..+...++.+|.|++...+. .
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~ 449 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence 7775 5779999999985 7778899999999999863321 3
Q ss_pred HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChh---HHHHHHHHHHHh
Q 009184 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTDACWALSYL 270 (541)
Q Consensus 194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~~L~~l 270 (541)
+..+.+.|++++|+.++ .+.++.++..++|+|.+|+.....+......|+++.|+.++.+.... .+..|+++|.++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 45677899999999999 77889999999999999998766566666689999999999877543 789999999999
Q ss_pred ccCChHHHHHHHH---hCcHHHHHHhhCC-CChh------------h-HHHHHHHHhHhhcCCc----hhHHHHHhc-Cc
Q 009184 271 SDGTNDKIQAVIE---AGVFPRLAEFLMH-PSPS------------V-LIPALRTVGNIVTGDD----MQTQCVIEY-QA 328 (541)
Q Consensus 271 ~~~~~~~~~~~~~---~g~l~~L~~lL~~-~~~~------------v-~~~al~~L~nl~~~~~----~~~~~~~~~-~~ 328 (541)
+...+... .+-. .|+++.|+.+|.. +... . +.+|+.+|+|+++.++ .....++.. |+
T Consensus 529 lis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 529 LIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred HhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 84433211 1111 2889999999983 2211 1 6799999999999873 335667774 99
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHH-HHHHhhchhhHHHHHhc------CcHHHHHHHhhcCchhHHHHH
Q 009184 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QVIMHVHAFSIIAVIEA------NIIGPLVALLENAEFDIKKEA 401 (541)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~~~~~~~~l~~~------~~l~~L~~~l~~~~~~v~~~a 401 (541)
++.|..+|.++ +..+|++|+|+++|++.. ++.+ + .+.+. +-++.|+.++..++.++|..|
T Consensus 608 ~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~-----------k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AA 674 (778)
T 3opb_A 608 WSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAA-----------KFFNLENPQSLRNFNILVKLLQLSDVESQRAV 674 (778)
T ss_dssp HHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGG-----------GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHH-----------HHHhhcCchhhccHHHHHHHHcCCCHHHHHHH
Confidence 99999999998 899999999999999984 4443 3 33321 248899999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHc-CChHHHhhhcCC--CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcch
Q 009184 402 AWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 478 (541)
Q Consensus 402 ~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 478 (541)
+|+|.|++.. .+..+..+++. ++++.++.++.. ++++++..++.++.++..+.+... +...+....+....
T Consensus 675 agALAnLts~-~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~-----~~~~~~~~~~~~~l 748 (778)
T 3opb_A 675 AAIFANIATT-IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG-----TNEVYPLLQENQKL 748 (778)
T ss_dssp HHHHHHHHHH-CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT-----TTSCCHHHHSCHHH
T ss_pred HHHHHHhcCC-ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC-----ChHHHHHHhcChHH
Confidence 9999999753 56667788876 799999999998 899999999999999997653322 12234555545555
Q ss_pred HHHHHHHh
Q 009184 479 LEKIESLQ 486 (541)
Q Consensus 479 ~~~l~~L~ 486 (541)
.+.+..+.
T Consensus 749 ~~~l~~~l 756 (778)
T 3opb_A 749 KDALNMSL 756 (778)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55665553
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1.4e-22 Score=184.96 Aligned_cols=199 Identities=38% Similarity=0.567 Sum_probs=185.1
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 320 (541)
..+..+.|..+|.+++++++..++|+|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 36778899999999999999999999999998888888889999999999999999999999999999999999888888
Q ss_pred HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE 400 (541)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 400 (541)
..+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+ .+++.|+++.|++++.+++++++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~-----------~~~~~~~i~~L~~ll~~~~~~v~~~ 157 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ-----------AVIDAGALPALVQLLSSPNEQILQE 157 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH-----------HHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 8899999999999999999 999999999999999998888888 8899999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184 401 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 452 (541)
Q Consensus 401 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~ 452 (541)
|+++|.|++.. +++....+.+.|+++.|+.++.+++++++..++.+|.+|.
T Consensus 158 a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 158 ALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 99999999985 5677788889999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=1.4e-22 Score=184.98 Aligned_cols=199 Identities=34% Similarity=0.529 Sum_probs=181.4
Q ss_pred hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 009184 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (541)
Q Consensus 114 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 193 (541)
..+..+.|+.+|++++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4678999999999988 999999999999999888999999999999999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
+..+.+.|+++.|+.+| .++++.++..++|+|.+++.+.+. .......+++|.|+.++.+++++++..++|+|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 777899999999999999986532 2233457899999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
.++.....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=4.9e-22 Score=188.89 Aligned_cols=188 Identities=14% Similarity=0.143 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~ 209 (541)
.+-+..|+..|.+++. +.++...+...|++|.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999998 5678888889999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009184 210 LNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (541)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 288 (541)
|..+++..+++.++|+|++++++.+. .......+++|.|+.+|.+++..++..++|+|++++.++++....+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 96556789999999999999998633 33344478999999999999999999999999999988888889999999999
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcCCchh
Q 009184 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (541)
Q Consensus 289 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 319 (541)
.|+.+|.+++..++..|+++|++++.+.+..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999885433
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=169.83 Aligned_cols=197 Identities=19% Similarity=0.150 Sum_probs=170.6
Q ss_pred CHHHHHHhhcCCCcH--HHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184 117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 194 (541)
.+|.|+++|.+++ + +++..|+++|.+++.++++.+..+++.|+||.|+++|.++++++++.|+|+|.||+.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999999889999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc----------------cCChh
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE 258 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----------------~~d~~ 258 (541)
..+.+.|++++|+.+|..+.+..+++.++.+|++|+...... .....+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999955678899999999999999765433 2334567898887653 13678
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcC
Q 009184 259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG 315 (541)
Q Consensus 259 v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~ 315 (541)
++.++..+|.+++..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776777777765 778999999854 2567899999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=6.4e-20 Score=166.65 Aligned_cols=197 Identities=16% Similarity=0.187 Sum_probs=166.0
Q ss_pred CCHHHHHHhhcCCCH--HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184 73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
..+|.+++.|.++++ +++..|++.++++.... .+....+++.|++|.|+++|++++ +++|..|+|+|.||+.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 378999999999988 88999999999987653 556778889999999999999988 99999999999999998899
Q ss_pred HHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---------------CCC
Q 009184 151 HTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------------GQP 214 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---------------~~~ 214 (541)
++..+.+.|+||.|+++|. +++.+++++++.+|+|++.... .+..+.+. ++++|+.++. ...
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999997 5789999999999999997655 67777664 6898887652 113
Q ss_pred hhhHHHHHHHHHHhhhcCC-CCCChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 009184 215 KLSMLRNATWTLSNFCRGK-PQPPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG 273 (541)
Q Consensus 215 ~~~~~~~a~~~L~~l~~~~-~~~~~~~-~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~ 273 (541)
++.++.+++++|.||+... ..+.... ..|+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6789999999999999865 3333333 35788999999974 2567899999999999854
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.77 E-value=1.5e-17 Score=183.95 Aligned_cols=354 Identities=13% Similarity=0.135 Sum_probs=259.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (541)
-+.+++.|.++++.++..++.++..++........ .++++.|++.+++++ +.++..++.+|..++...+.....
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence 35566778888899999999999999876411111 457999999999888 899999999999998754433211
Q ss_pred HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184 155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 155 i~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 230 (541)
-. -..+++.|++++.++++.+|..|+++|++++...+....... ..+++.++..+ .++++.++..++++|..++
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 00 123577888888889999999999999998865442111111 13567777777 6788999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhh-----------CC
Q 009184 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----------MH 296 (541)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL-----------~~ 296 (541)
...+..-.....++++.+..++.+.++.++..+++.+..++...... . .+.. .+++.++..+ .+
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-D-VLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-H-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-H-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 87543222344678888889998889999999999999998654211 1 1221 4566666666 33
Q ss_pred -----------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHH
Q 009184 297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV 365 (541)
Q Consensus 297 -----------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (541)
.++.++..|..+|+.++...+.. ++ ..+++.+..++.+. ++.+|..|++++++++.+..+.+.
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~- 395 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMI- 395 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHG-
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHH-
Confidence 34568999999999998654422 11 24678888888888 899999999999999997766554
Q ss_pred HHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHH
Q 009184 366 IMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCL 445 (541)
Q Consensus 366 ~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l 445 (541)
..+ .++++.++..+.++++.||..|+|++++++........ .-.-.++++.|+..+.++++.++..++
T Consensus 396 ----------~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~~vr~~a~ 463 (852)
T 4fdd_A 396 ----------PYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNKRVQEAAC 463 (852)
T ss_dssp ----------GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred ----------HHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 322 36889999999999999999999999998763111000 001124678888888888999999999
Q ss_pred HHHHHHHHhhH
Q 009184 446 EGLENILKVGE 456 (541)
Q Consensus 446 ~~L~~l~~~~~ 456 (541)
++|.++.....
T Consensus 464 ~aL~~l~~~~~ 474 (852)
T 4fdd_A 464 SAFATLEEEAC 474 (852)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHhh
Confidence 99999987544
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.77 E-value=5.5e-17 Score=171.80 Aligned_cols=344 Identities=11% Similarity=0.122 Sum_probs=247.1
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCR 194 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r 194 (541)
.++|.+..++++++ +.+|..|+.+|+.++..... ......+++.++.++.++++.++..|+++|+.++...+ ..+
T Consensus 242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 35666666666665 77777777777777652111 11223467888999999999999999999999985432 222
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
.......+++.+..++ .+.+..++..++++|..++..-.. ......++|.+..++.+++++++..++.++..+....
T Consensus 318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 1112233566777777 778899999999999999864211 1223567889999999889999999999988877432
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (541)
... .....+++.+..++.+.++.++..++.+++.++...... .....+++.+..++.+. +..+|..|+.+++.
T Consensus 395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK 467 (588)
T ss_dssp CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 211 122357888889999999999999999999987532211 12234678889999888 89999999999999
Q ss_pred HhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC
Q 009184 355 ITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 434 (541)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 434 (541)
++...... .....++|.|..++.++++.+|..++++++.++.....+ .....+++.|..+++
T Consensus 468 l~~~~~~~--------------~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~ 529 (588)
T 1b3u_A 468 LVEKFGKE--------------WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAG 529 (588)
T ss_dssp HHHHHCHH--------------HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGG
T ss_pred HHHHhCch--------------hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCC
Confidence 98731111 112357888888888889999999999999997632111 123468899999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184 435 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 505 (541)
Q Consensus 435 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~ 505 (541)
+++++++..++++|..+....... +. ....+..|..+...++++|+..|...+..+-
T Consensus 530 d~~~~Vr~~a~~~l~~l~~~~~~~----------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 530 DPVANVRFNVAKSLQKIGPILDNS----------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp CSCHHHHHHHHHHHHHHGGGSCHH----------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHHHHHhchh----------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 999999999999999988643111 11 1334566777889999999999999988653
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.76 E-value=1.5e-18 Score=191.89 Aligned_cols=358 Identities=14% Similarity=0.154 Sum_probs=255.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHH-H---HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-V---IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~---i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~ 148 (541)
+.++.+++.+.++++..+..++.+|..++... .+.... . .-..++|.|++++++++ +.++..|+++|.++....
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISR 205 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcc
Confidence 36788888999999999999999999987642 111110 0 01346888888888877 999999999999888754
Q ss_pred hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (541)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 228 (541)
+......+ ..+++.++.++.++++.++..++++|+.++...+..-...+. ++++.++..+ .+.++.++..+++++..
T Consensus 206 ~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 206 TQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLT 282 (852)
T ss_dssp CHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHH
Confidence 43221111 246788888899999999999999999999766543222222 3567777777 67789999999999999
Q ss_pred hhcCCCCCC--hhhhhchHHHHHHhhc-----------c-----------CChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009184 229 FCRGKPQPP--FDQVSPALPALAHLIH-----------S-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (541)
Q Consensus 229 l~~~~~~~~--~~~~~~~l~~L~~lL~-----------~-----------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 284 (541)
+++...... ......++|.++..+. . .+..++..+..++..++....+. ++ .
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~ 358 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-P 358 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-H
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-H
Confidence 987631111 1123466777777762 2 12346778888888887543221 22 2
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
.+++.+...+.++++.++..|++++++++.+....... .-.++++.++.++.++ ++.||..|+|++++++........
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~ 436 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPP 436 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchH
Confidence 46788888889999999999999999999887654432 2346889999999988 999999999999999873221111
Q ss_pred HHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184 365 VIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 444 (541)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~ 444 (541)
...-.++++.|+..+.+.++.++..|+++|.+++.........++ .++++.|..+++..+.+....+
T Consensus 437 -----------~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~ 503 (852)
T 4fdd_A 437 -----------DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLIL 503 (852)
T ss_dssp -----------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHH
Confidence 111225788899999888999999999999999864332222222 3567778888877677666677
Q ss_pred HHHHHHHHHh
Q 009184 445 LEGLENILKV 454 (541)
Q Consensus 445 l~~L~~l~~~ 454 (541)
++++..+...
T Consensus 504 ~~ai~~l~~~ 513 (852)
T 4fdd_A 504 YDAIGTLADS 513 (852)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888888754
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.74 E-value=3.1e-16 Score=166.04 Aligned_cols=381 Identities=12% Similarity=0.086 Sum_probs=281.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.++.+...+..+++.++..|+..+..+.... +. ......++|.|..++++++ +.++..|+.+|..++...+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence 3455566667888999999999999887642 11 1223567899999998887 899999999999988643321
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
.....++|.+..++.+++..+|..++.+|+.++..... .......++.++.++ .++++.++..++++|..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence 11234678888999999999999999999999743211 112233578888888 7788999999999999999875
Q ss_pred CCCCh--hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 234 PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 234 ~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
+.... .....++|.+..++.+.++.++..+++++..++..-... .....+++.+..++.++++.++..++.+++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33211 345778899999999999999999999999987432211 1223578889999999999999999999998
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALL 390 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l 390 (541)
++...... .....+++.+..++.+. +..+|..++.+++.++.. ..+. ....+++.++..+
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~---------------~~~~l~~~l~~~l 450 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF---------------FDEKLNSLCMAWL 450 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG---------------CCHHHHHHHHHGG
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHHH---------------HHHHHHHHHHHHh
Confidence 87643321 12235778888888887 899999999999999752 1111 1124678888999
Q ss_pred hcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhh
Q 009184 391 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT 470 (541)
Q Consensus 391 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 470 (541)
.+++..+|..|+.++..++.....+. ....+++.|..++.+++..++..++.++..+........ |.
T Consensus 451 ~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~---------~~ 517 (588)
T 1b3u_A 451 VDHVYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------TT 517 (588)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------HH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH---------HH
Confidence 98899999999999999976433321 234578888888888899999999999998876532211 12
Q ss_pred hHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 471 ~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
...+..|..+..+++++|+..+.+.+..++.
T Consensus 518 -----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 518 -----KHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp -----HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred -----HHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 2345667777788889999988888887764
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.73 E-value=1.3e-15 Score=160.66 Aligned_cols=353 Identities=16% Similarity=0.174 Sum_probs=256.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
..++.+++.+.+++...+..+...+..++.. .+.. . .-+++.+.+-|++++ +.++..|+.+|+++.. ++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~--~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDM--A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHH--H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchH--H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence 3678899999999999998888888877653 1111 1 224678888888888 9999999999999863 5544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..+ ++.+.+++.++++.+|..|++++.+++...++. +...+.++.+..+| .++++.++..|+++|..++..
T Consensus 120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 433 578899999999999999999999998765542 22245678888888 788999999999999999987
Q ss_pred CCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 233 KPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 233 ~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
.+.. ......+.++.|+..+...++..+..++.++..++..++... ..+++.+..++++.++.++..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6533 233445667778888878888888899999988875544332 2567888889999999999999999999
Q ss_pred hhcC---CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH----h--hc-------hhhH-
Q 009184 312 IVTG---DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM----H--VH-------AFSI- 374 (541)
Q Consensus 312 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~--~~-------~~~~- 374 (541)
+... +++....+. ..+.+.|+.++. + ++.+|..|+.+|+.++...++.+.... . .+ ..+.
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L 342 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM 342 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence 8753 233333332 355677776654 5 889999999999999864333221100 0 00 1111
Q ss_pred HHHHhc----CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHH
Q 009184 375 IAVIEA----NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 450 (541)
Q Consensus 375 ~~l~~~----~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~ 450 (541)
..+.+. .+++.|..++.+.+.+++..++++|++++... +... ..+++.|++++...+..++..++.++..
T Consensus 343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ 416 (591)
T 2vgl_B 343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRD 416 (591)
T ss_dssp HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 111222 25666777777789999999999999999853 3222 2367899999998888888888888888
Q ss_pred HHHhhHh
Q 009184 451 ILKVGEA 457 (541)
Q Consensus 451 l~~~~~~ 457 (541)
++...+.
T Consensus 417 ii~~~p~ 423 (591)
T 2vgl_B 417 IFRKYPN 423 (591)
T ss_dssp HHHHSCS
T ss_pred HHHHCcc
Confidence 8765443
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=4.8e-15 Score=150.44 Aligned_cols=369 Identities=16% Similarity=0.156 Sum_probs=273.0
Q ss_pred CCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC-CcHHHHHHHHHHHHHHhcCChh
Q 009184 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 73 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~l~~~~~~ 150 (541)
+.++.+.+.+.+ .-.+.|..|+..|+.+.... . .-+.+++++.|+..|+.+ ++.++...++..|.++....++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y----~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY----R-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT----T-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh----H-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 578999999986 45789999999999986432 1 233456799999999875 3488888999999988775432
Q ss_pred -----------------HHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhc-CChHHHHHhh
Q 009184 151 -----------------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQ-GGLVPLLAQL 210 (541)
Q Consensus 151 -----------------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~-g~i~~Ll~~l 210 (541)
..+.+. +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.++.. ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 233443 467899999999999999999999999999987776 77777744 8899999999
Q ss_pred cCCChhhHHHHHHHHHHhhhcCCCCCCh-hhhhchHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184 211 NGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (541)
Q Consensus 211 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 285 (541)
++..+.++..++.+|.+|+.+.+..+. ....++++.|+.++..+. ..+..+|+.++.+|...+..+...+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 677889999999999999999854443 445799999999998654 36899999999999999998888899999
Q ss_pred cHHHHHHhhCCCChh------hHH---HHHHHHhHhhcCCc------hhHHHHHhcCchHHHHHhhcCCC-chhHHHHHH
Q 009184 286 VFPRLAEFLMHPSPS------VLI---PALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC 349 (541)
Q Consensus 286 ~l~~L~~lL~~~~~~------v~~---~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 349 (541)
.++.|..+|..+... ... .++.++.-++..+. .....+.++|+++.|++++.... ...++.+|+
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 122 25666766666522 34457789999999999987642 567999999
Q ss_pred HHHHHHhcCChHHHHHHHhhchhhHHHHHhcC---------cHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHH
Q 009184 350 WTVSNITAGNREQIQVIMHVHAFSIIAVIEAN---------IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKF 419 (541)
Q Consensus 350 ~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~---------~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~ 419 (541)
.+++.+.++++.... .+.+.. ++..|+.++.+ ...++|..|+.++..+..+. .+....
T Consensus 335 ~tla~~irgN~~~Q~-----------~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~ 402 (651)
T 3grl_A 335 NTVSEVIRGCQVNQD-----------YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGE 402 (651)
T ss_dssp HHHHHHHTTCHHHHH-----------HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHhCCHHHHH-----------HHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHH
Confidence 999999999888776 544322 33334444444 35899999999999999864 333333
Q ss_pred HHHc----C------Ch---HHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhh
Q 009184 420 LVIQ----G------CI---KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK 459 (541)
Q Consensus 420 l~~~----~------~i---~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~ 459 (541)
++.. . .+ ..|+.-+-+.|+.-.-.+.-++.+++...+..|
T Consensus 403 i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K 455 (651)
T 3grl_A 403 IVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQK 455 (651)
T ss_dssp HHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHH
Confidence 3332 0 11 123444445566544445567777777665544
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=2e-14 Score=145.95 Aligned_cols=414 Identities=13% Similarity=0.136 Sum_probs=291.0
Q ss_pred CCHHHHHHhhcC--CCHHHHHHHHHHHHHHHccCCCC----------------cHHHHH-hcCCHHHHHHhhcCCCcHHH
Q 009184 73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEVI-RSGVVPRFVEFLLREDYPQL 133 (541)
Q Consensus 73 ~~l~~l~~~L~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~i-~~g~i~~Lv~lL~~~~~~~i 133 (541)
.+++.++..|+. .|.++...++..|..+++....+ ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999986 57888888999998888754221 123444 4678999999999888 999
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc
Q 009184 134 QFEAAWALTNIASGTSE-HTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (541)
Q Consensus 134 ~~~a~~~L~~l~~~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~ 211 (541)
+..++.+|..++...++ ..+.+.. .++++.|+.+|+++.+.+|..++..|.+++.++++.++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999998877 6666775 499999999999999999999999999999999999999988899999999994
Q ss_pred CCC---hhhHHHHHHHHHHhhhcCCC-CCChhhhhchHHHHHHhhccCChh------HHHH---HHHHHHHhccC-----
Q 009184 212 GQP---KLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDE------VLTD---ACWALSYLSDG----- 273 (541)
Q Consensus 212 ~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~------v~~~---a~~~L~~l~~~----- 273 (541)
... ...+...++.++.+|.+.++ +.......+++|.|.+++..+++. ...+ ++.++.-++..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 322 34678999999999999973 444555678999999998754321 2333 44455555433
Q ss_pred -ChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCCchhHHHHHhcC---------chHHHHHhhcCCCc
Q 009184 274 -TNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---------ALPCLLNLLSGNYK 341 (541)
Q Consensus 274 -~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~ 341 (541)
...+...+.+.|++..+++++..+ ...++..|+.+++.+..+++...+.+.... ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 123456688899999999998765 567899999999999999987666654322 44445555666546
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc----------C---cHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184 342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA----------N---IIGPLVALLENAEFDIKKEAAWAISNA 408 (541)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~----------~---~l~~L~~~l~~~~~~v~~~a~~aL~nl 408 (541)
..+|.+|+.++..+..++++... .+... + .-..|+..+.+.|+--.-.|+.++.++
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~-----------~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hl 447 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQG-----------EIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHA 447 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHH-----------HHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH-----------HHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHH
Confidence 88999999999999998876544 22211 0 112345556666765556688888888
Q ss_pred ccCCCHHHHHHHHH--------c---CChHHHhhhcCC-CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhc
Q 009184 409 TSGGTHEQIKFLVI--------Q---GCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA 476 (541)
Q Consensus 409 ~~~~~~~~~~~l~~--------~---~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 476 (541)
... +++....+.. . ..+..+..+|.. .++.+....|..|..-+.-+ ...+..++.+.
T Consensus 448 l~~-n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~----------p~AV~dFL~~~ 516 (651)
T 3grl_A 448 LQE-NATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNC----------PIAVTHFLHNS 516 (651)
T ss_dssp HTT-CHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTC----------HHHHHHHHHST
T ss_pred HcC-CHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCC----------hHHHHHHHcCC
Confidence 885 4444333322 1 114444555543 44554444444333333322 33456777777
Q ss_pred chHHHHHHHh-cC-C--CHHHHHHHHHHHHHhCCCCC
Q 009184 477 EGLEKIESLQ-TH-D--NAEIYEKSVKLLETYWLDDE 509 (541)
Q Consensus 477 ~~~~~l~~L~-~~-~--~~~i~~~a~~il~~~~~~~~ 509 (541)
..++.|.+.. ++ . +.-|+-.+.-++--+|....
T Consensus 517 s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~ 553 (651)
T 3grl_A 517 ANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFND 553 (651)
T ss_dssp THHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccC
Confidence 7788887654 22 2 23467777777776555433
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.68 E-value=1.1e-15 Score=161.34 Aligned_cols=388 Identities=15% Similarity=0.151 Sum_probs=251.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.++.+.+.|.++++.++..|++.+.++.. ....+ .+++.+.+++.+++ +.+|..|++++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 56677777888999999888888776631 22222 24778999999887 99999999999999987665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
+.++++.|..+|.++++.++..|+++|+.++.+.+..+...+..+.+..|+..+ ...++-.+..++.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987764211111122456677776 3456667777777777776332
Q ss_pred CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (541)
Q Consensus 234 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 310 (541)
......+++.+..++++.++.|+..|++++.++... +++..+.+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 233467888899999999999999999999998742 233333333 245666776654 77888888888888
Q ss_pred HhhcCCchh-----------------H-HHHH-------hc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184 311 NIVTGDDMQ-----------------T-QCVI-------EY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (541)
Q Consensus 311 nl~~~~~~~-----------------~-~~~~-------~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (541)
.++...+.. . ...+ +. .+++.|..++.+. +..+|..+++++++++...+.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence 887532111 0 0000 11 2455666777777 889999999999999986543
Q ss_pred HHHHH----Hhh---c-hh-------hHHHHHh------cCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHH
Q 009184 362 QIQVI----MHV---H-AF-------SIIAVIE------ANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKF 419 (541)
Q Consensus 362 ~~~~~----~~~---~-~~-------~~~~l~~------~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~ 419 (541)
....+ +.. . +. ....++. ..+++.|++.+.+ .+++++..++|+|+........
T Consensus 387 ~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~----- 461 (591)
T 2vgl_B 387 SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN----- 461 (591)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----
Confidence 32211 110 0 00 0011111 2356666666653 4567777777777777654321
Q ss_pred HHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHH-HHHh-cCCCHHHHHHH
Q 009184 420 LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI-ESLQ-THDNAEIYEKS 497 (541)
Q Consensus 420 l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~L~-~~~~~~i~~~a 497 (541)
...+++.+..-+...++.++..++.++.++....+.. . ...+..+ .... .+.+++|+++|
T Consensus 462 --~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-----------~-----~~~i~~ll~~~~~d~~d~evrdRA 523 (591)
T 2vgl_B 462 --ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-----------T-----QELVQQVLSLATQDSDNPDLRDRG 523 (591)
T ss_dssp --HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-----------T-----HHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred --HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-----------H-----HHHHHHHHHHhhhcCCChHHHHHH
Confidence 1244555555555566777777777777666432210 0 1223333 3333 46899999999
Q ss_pred HHHHHHh
Q 009184 498 VKLLETY 504 (541)
Q Consensus 498 ~~il~~~ 504 (541)
...+.-+
T Consensus 524 ~~y~~ll 530 (591)
T 2vgl_B 524 YIYWRLL 530 (591)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 9877544
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.68 E-value=4.4e-15 Score=141.56 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=200.7
Q ss_pred HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009184 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (541)
Q Consensus 113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 192 (541)
.+.+.++.|+..|.+++ +.++..|+++|+++.. + +.++.|+.++.++++.++..|+++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 34667999999999887 9999999999999863 2 3578899999999999999999999998644332
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
... .++.+...+..++++.++..++++|..+....+ ......++.|..++.++++.++..++++|+.+..
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 233343333367889999999999999985432 1235678999999999999999999999998753
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (541)
Q Consensus 273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (541)
.+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2578999999999999999999999999853322 3567888999888 899999999999
Q ss_pred HHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhh
Q 009184 353 SNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDL 432 (541)
Q Consensus 353 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l 432 (541)
+++. ++ ..++.|+..+.++ +++..|+++|+.+.. ..+++.|..+
T Consensus 217 ~~~~--~~--------------------~~~~~L~~~l~d~--~vr~~a~~aL~~i~~------------~~~~~~L~~~ 260 (280)
T 1oyz_A 217 SYRK--DK--------------------RVLSVLCDELKKN--TVYDDIIEAAGELGD------------KTLLPVLDTM 260 (280)
T ss_dssp HHTT--CG--------------------GGHHHHHHHHTSS--SCCHHHHHHHHHHCC------------GGGHHHHHHH
T ss_pred HHhC--CH--------------------hhHHHHHHHhcCc--cHHHHHHHHHHhcCc------------hhhhHHHHHH
Confidence 9985 22 2566778888764 489999999999843 1467888888
Q ss_pred cCC-CChHHHHHHHHHHH
Q 009184 433 LVC-PDPRIVTVCLEGLE 449 (541)
Q Consensus 433 L~~-~~~~~~~~~l~~L~ 449 (541)
+.. ++++++..+++.|.
T Consensus 261 l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 261 LYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HTTSSCCHHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHhh
Confidence 864 56777777777664
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.64 E-value=9.4e-14 Score=147.05 Aligned_cols=324 Identities=16% Similarity=0.120 Sum_probs=227.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
.....+++.+.+++...+.-+.-.+..++.. ++..-. -+++.|.+-|++++ +.++..|+++|+++.. ++..
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~ 140 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMC 140 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHH
Confidence 3678888999999999888888888887643 222111 14778888888888 9999999999999984 4433
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
. .+++.+.+++.++++.+|..|+.++++++...|+.. .++++.+..++ .+.++.++..|+++|..++..
T Consensus 141 ~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 141 R-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp H-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCS
T ss_pred H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHh
Confidence 2 346888999999999999999999999987666422 24677777777 778899999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcc---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC--
Q 009184 233 KPQPPFDQVSPALPALAHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-- 295 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~---------------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-- 295 (541)
.+.. ......++|.++.+|.. .++..+..++.+|+.++..++... ..+++.|..++.
T Consensus 210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~ 283 (618)
T 1w63_A 210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNT 283 (618)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTS
T ss_pred ChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhcc
Confidence 4321 22345677877777653 478888889999999987665432 244555555542
Q ss_pred ----CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhch
Q 009184 296 ----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371 (541)
Q Consensus 296 ----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 371 (541)
+.+..+...|++++..+... +.. . ..+++.|..++.+. ++.+|..|+.+|+.++...+..+.
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~~------- 349 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSE-SGL----R-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAVQ------- 349 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCC-HHH----H-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHHG-------
T ss_pred ccccchHHHHHHHHHHHHHhcCCC-HHH----H-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHHH-------
Confidence 23457888999999887542 211 1 13567888888888 899999999999999875454333
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHH
Q 009184 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 451 (541)
Q Consensus 372 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l 451 (541)
...+.++..+.+++..+|..|+.+|..++...+.+. +++.|...+...+.+++..++.+|..+
T Consensus 350 ---------~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 350 ---------RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKADCASGIFLA 412 (618)
T ss_dssp ---------GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 244566667777777777777777777766433211 234444445455555555555555555
Q ss_pred HH
Q 009184 452 LK 453 (541)
Q Consensus 452 ~~ 453 (541)
..
T Consensus 413 a~ 414 (618)
T 1w63_A 413 AE 414 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.63 E-value=4.5e-14 Score=134.56 Aligned_cols=254 Identities=14% Similarity=0.099 Sum_probs=198.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
..++.+++.|.++++.++..|++.|.++.. .+.++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 478999999999999999999999998741 235889999999888 9999999999999875322 11
Q ss_pred HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184 153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (541)
Q Consensus 153 ~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 231 (541)
. .+++.|. .++.++++.++..++++|+++....+... ...++.++..+ .++++.++..++++|..+..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 1 1234444 24677899999999999999974333221 22577888888 78899999999999998754
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (541)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 311 (541)
...+|.|..++.++++.++..++++|+.+....+ .+++.|..++.++++.++..|+++|+.
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2478999999999999999999999999854332 356788899999999999999999999
Q ss_pred hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh
Q 009184 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE 391 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~ 391 (541)
+. +...++.|+.++.++ + ++..|+++|+.+.. + .+++.|..++.
T Consensus 219 ~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~--------------------~~~~~L~~~l~ 262 (280)
T 1oyz_A 219 RK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K--------------------TLLPVLDTMLY 262 (280)
T ss_dssp TT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G--------------------GGHHHHHHHHT
T ss_pred hC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h--------------------hhhHHHHHHHh
Confidence 86 235678889999765 3 89999999998843 2 25677888886
Q ss_pred c-CchhHHHHHHHHHH
Q 009184 392 N-AEFDIKKEAAWAIS 406 (541)
Q Consensus 392 ~-~~~~v~~~a~~aL~ 406 (541)
+ .+.++...++.+|.
T Consensus 263 ~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 263 KFDDNEIITSAIDKLK 278 (280)
T ss_dssp TSSCCHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHhh
Confidence 5 46788888877764
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.60 E-value=9.7e-14 Score=153.72 Aligned_cols=355 Identities=14% Similarity=0.185 Sum_probs=243.5
Q ss_pred CHHHHHHhhcC-------CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 74 NLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 74 ~l~~l~~~L~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
.+|.++..+.. +++..+..|..+|..+......... ..+++.+.+.+++.+ +..+..|+++++.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 45666666664 2357888888888887754211111 235677777888777 9999999999999998
Q ss_pred CCh-hHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--HHHHHhcCChHHHHHhhcCCChhhHHHHHH
Q 009184 147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (541)
Q Consensus 147 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~ 223 (541)
+.. +.....+. .+++.|+..+.++++.+|..++|+++.++...... ....+ ...++.++..+ .+. +.++..++
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l-~~~-~~v~~~a~ 474 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGL-QDH-PKVATNCS 474 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHH-TSC-HHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHh-ccC-hHHHHHHH
Confidence 643 33333333 47889999999999999999999999998432110 00011 12467777777 443 88999999
Q ss_pred HHHHhhhcCCC----CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-
Q 009184 224 WTLSNFCRGKP----QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH- 296 (541)
Q Consensus 224 ~~L~~l~~~~~----~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~- 296 (541)
|++.+++.... ..-......+++.|..++.+.+ +.++..++++++.++..........+. .+++.++..+..
T Consensus 475 ~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~ 553 (861)
T 2bpt_A 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQT 553 (861)
T ss_dssp HHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHH
Confidence 99999987532 1112344677888888887544 789999999999988554433222222 355666655532
Q ss_pred --------------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCch-hHHHHHHHHHHHHhcCChH
Q 009184 297 --------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNRE 361 (541)
Q Consensus 297 --------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~~ 361 (541)
....++..++.+|++++........... ..+++.++..+.+. +. .++..++++++.++.....
T Consensus 554 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~ 631 (861)
T 2bpt_A 554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGK 631 (861)
T ss_dssp TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGG
T ss_pred HhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhh
Confidence 1345778899999999876544322222 25778888888887 56 8999999999999874333
Q ss_pred HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC--hH
Q 009184 362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--PR 439 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~--~~ 439 (541)
... ..+. .++|.|+..+.+.+++++..++.++..++.........++ ..+++.+...+.+++ ++
T Consensus 632 ~~~-----------~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~ 697 (861)
T 2bpt_A 632 GFE-----------KYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRE 697 (861)
T ss_dssp GGH-----------HHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTT
T ss_pred hHH-----------HHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHh
Confidence 232 2222 4889999999878889999999999988764332222222 346777778777654 78
Q ss_pred HHHHHHHHHHHHHHhh
Q 009184 440 IVTVCLEGLENILKVG 455 (541)
Q Consensus 440 ~~~~~l~~L~~l~~~~ 455 (541)
++..++.++..+....
T Consensus 698 vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 698 LKPAVLSVFGDIASNI 713 (861)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999998754
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.60 E-value=1e-13 Score=153.46 Aligned_cols=357 Identities=15% Similarity=0.169 Sum_probs=245.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCC----------------CCcHHHHHhcCCHHHHHHhhcCC------CcHH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER----------------SPPIEEVIRSGVVPRFVEFLLRE------DYPQ 132 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~----------------~~~~~~~i~~g~i~~Lv~lL~~~------~~~~ 132 (541)
++.+...+.+.++.++..|+..+..++.... .......+ ..++|.++..+... +++.
T Consensus 268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~ 346 (861)
T 2bpt_A 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWN 346 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCc
Confidence 4445556677889999999999988765310 00111111 45788888888752 2257
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhc
Q 009184 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLN 211 (541)
Q Consensus 133 i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~ 211 (541)
++..|..+|..++....+. ++ ..+++.+.+.+.+.+..+++.++++++.++.... ..-...+. .+++.++..+
T Consensus 347 ~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l- 420 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLM- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGG-
T ss_pred HHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHc-
Confidence 8999999999988632211 11 1346777778888899999999999999996542 21112222 2577778877
Q ss_pred CCChhhHHHHHHHHHHhhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh----HHHHHHHHhC
Q 009184 212 GQPKLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN----DKIQAVIEAG 285 (541)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~----~~~~~~~~~g 285 (541)
.++++.++..++|++..++...+. ........++|.++..+.++ +.++..++|++.+++.... ......+ ..
T Consensus 421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~ 498 (861)
T 2bpt_A 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PA 498 (861)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HH
Confidence 667899999999999999875321 12335678889999988765 8999999999998875311 1111112 25
Q ss_pred cHHHHHHhhCCCC--hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC--------------CchhHHHHHH
Q 009184 286 VFPRLAEFLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--------------YKKSIKKEAC 349 (541)
Q Consensus 286 ~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--------------~~~~v~~~a~ 349 (541)
+++.++..+.+.+ +.++..++.+++.++..........+. .+++.++..+... ....++..++
T Consensus 499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence 6778888887543 789999999999998766544333332 3566666665421 1346788999
Q ss_pred HHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCch-hHHHHHHHHHHHhccCCCHHHHHHHHHcCChHH
Q 009184 350 WTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEF-DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP 428 (541)
Q Consensus 350 ~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 428 (541)
.+|++++......+. .... .+++.++..+...+. .++..+++++..++.........++- .+++.
T Consensus 578 ~~l~~l~~~~~~~~~-----------~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~ 643 (861)
T 2bpt_A 578 TVLAAVIRKSPSSVE-----------PVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPY 643 (861)
T ss_dssp HHHHHHHHHCGGGTG-----------GGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHH
T ss_pred HHHHHHHHHhhhhhH-----------HHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHH
Confidence 999999874443332 2222 577888888888766 89999999999987543323333332 37788
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 429 LCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 429 L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
|...++.++++++..++.++..+....
T Consensus 644 l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 644 LLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 888888888889999999999888754
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.58 E-value=2e-13 Score=151.55 Aligned_cols=359 Identities=17% Similarity=0.189 Sum_probs=245.9
Q ss_pred CHHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChh
Q 009184 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE 150 (541)
Q Consensus 74 ~l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~ 150 (541)
.++.++..+.++ ++..+..++.++..++..- .+..-.-.-..+++.+.+.+.+++ ++.++..|+.++..++.....
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888 8999999999999988642 111100011346777888888762 389999999999998863222
Q ss_pred HHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184 151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 151 ~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 229 (541)
... ......+++.+...+.+++.+++..++.+|..++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 211 011112567778888888999999999999999865543222223334677777766 677889999999999888
Q ss_pred hcCC----------------C---CCChh--hhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCChHHHHHH
Q 009184 230 CRGK----------------P---QPPFD--QVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV 281 (541)
Q Consensus 230 ~~~~----------------~---~~~~~--~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~ 281 (541)
+... + ..... ....++|.++..+.. ++..++..+..++..++....+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 7541 1 11111 235667777777752 34568888999998887543221 1
Q ss_pred HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 282 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (541)
+. .+++.+...+.++++.++..|+.+++.++.+.. ......+ .++++.++..+.++ ++.+|..|+|++++++...+
T Consensus 364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence 22 466777788888999999999999999998765 3333333 45889999999888 89999999999999997433
Q ss_pred HHH--HHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC--------------HHHHHHHHHcC
Q 009184 361 EQI--QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT--------------HEQIKFLVIQG 424 (541)
Q Consensus 361 ~~~--~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~--------------~~~~~~l~~~~ 424 (541)
... . .. -..+++.|+..+.+. +.++..++++|.+++.... .....++ ..
T Consensus 441 ~~~~~~-----------~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 505 (876)
T 1qgr_A 441 EAAIND-----------VY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--EL 505 (876)
T ss_dssp GGTSST-----------TT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HH
T ss_pred hhcccH-----------HH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HH
Confidence 211 1 11 125778888888764 8999999999999975310 0001111 23
Q ss_pred ChHHHhhhcCCC---ChHHHHHHHHHHHHHHHhh
Q 009184 425 CIKPLCDLLVCP---DPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 425 ~i~~L~~lL~~~---~~~~~~~~l~~L~~l~~~~ 455 (541)
+++.|..++... +..++..+++++..+....
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 567777777654 3567778889998888754
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.57 E-value=6.8e-13 Score=147.21 Aligned_cols=275 Identities=20% Similarity=0.212 Sum_probs=193.7
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCcH-HHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 75 l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
++.+...+.++ ++.++..|+.++..++..- .+.. .......+++.+.+.+.+++ ++++..++.+|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 34455666665 5889999999999887532 1111 01111236777888887776 899999999999999865554
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---------------------hhHHHHHhcCChHHHHHhh
Q 009184 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP---------------------RCRDLVLSQGGLVPLLAQL 210 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---------------------~~r~~i~~~g~i~~Ll~~l 210 (541)
....+...+++.++..+.+.++.++..++.++.+++.... ....... ...++.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l 330 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTL 330 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHh
Confidence 4444444678888888888899999999999998874311 0000011 22456677776
Q ss_pred cC------CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh-HHHHHHHH
Q 009184 211 NG------QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE 283 (541)
Q Consensus 211 ~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~ 283 (541)
.. +.+..++..+..++..++...+ ......+++.+...+.+.++.++..++++++.++.... +......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 42 2345788889999988887543 13356678888888888899999999999999997654 3333333
Q ss_pred hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH-HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009184 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (541)
Q Consensus 284 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (541)
..+++.++..+.++++.++..|++++++++....... ..-.-..+++.|+..+.+ ++.++..++|+|++++..
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999997643311 000113567788888866 478999999999999863
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.56 E-value=4.1e-14 Score=144.97 Aligned_cols=357 Identities=15% Similarity=0.112 Sum_probs=243.3
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCc-----------HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHH
Q 009184 75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPP-----------IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL 141 (541)
Q Consensus 75 l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~-----------~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L 141 (541)
+..++..+.++ ++.+|..|+..|++++... ... +..-....+-..|++.|.+++ +.+ ..++.++
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i 113 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhcccc-chHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence 44556666553 6889999999999998542 100 001112234556778888877 778 8899999
Q ss_pred HHHhcCC-hhHHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCC-hh
Q 009184 142 TNIASGT-SEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP-KL 216 (541)
Q Consensus 142 ~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~-~~ 216 (541)
+.|+... +.. .-.++++.|+..+.++ ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.... +.
T Consensus 114 ~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 114 AGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence 9998732 210 0146789999999887 8999999999999998543 22111111 125677777784432 78
Q ss_pred hHHHHHHHHHHhhhcCCC-C-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009184 217 SMLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (541)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~-~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL 294 (541)
.++..+++++.++..... . ........+++.+...+.+.+++++..+++++..++..........+..++++.++..+
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764321 0 01111122467777777788999999999999998865443222122226677777788
Q ss_pred CCCChhhHHHHHHHHhHhhcCCch---------------------hHHHHHhcCchHHHHHhhcCC------CchhHHHH
Q 009184 295 MHPSPSVLIPALRTVGNIVTGDDM---------------------QTQCVIEYQALPCLLNLLSGN------YKKSIKKE 347 (541)
Q Consensus 295 ~~~~~~v~~~al~~L~nl~~~~~~---------------------~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~ 347 (541)
.+.++.++..|+..++.++..... ..... -..+++.++..+... .+..+|..
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH-hhhccHHHHHHHHhcccccccccchHHHH
Confidence 888899999999999988754210 01001 134567777777532 14578999
Q ss_pred HHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 009184 348 ACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 427 (541)
Q Consensus 348 a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~ 427 (541)
|+.+|..++....+.+ + ..+++.+...+.+.++.+|..|+.+++.++.+..++...... ..+++
T Consensus 348 a~~~L~~l~~~~~~~~--------------~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~ 411 (462)
T 1ibr_B 348 AGVCLMLLATCCEDDI--------------V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMP 411 (462)
T ss_dssp HHHHHHHHHHHTTTTH--------------H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHH
T ss_pred HHHHHHHHHHhccHHH--------------H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHH
Confidence 9999999987433221 1 146778888888899999999999999999865422111111 45788
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184 428 PLCDLLVCPDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 428 ~L~~lL~~~~~~~~~~~l~~L~~l~~~~~ 456 (541)
.++.++.++++.++..++++|.++.....
T Consensus 412 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 412 TLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999987653
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.54 E-value=5.2e-13 Score=136.67 Aligned_cols=401 Identities=11% Similarity=0.057 Sum_probs=267.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHH
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
+..++..+.++|...+..|-..|..+.... ..+++..|+.++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 557777888999999999999998864310 1345677888887652 489999999999998754311110
Q ss_pred H-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC--hhhHHH
Q 009184 154 V-----V------IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLR 220 (541)
Q Consensus 154 ~-----i------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~--~~~~~~ 220 (541)
. . ....+-..|+..+.++++.+ ..++.+++.++...... . .-.+.++.++..+ .+. ++.++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANV-TNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence 0 0 00122355777788877778 88999999997432110 0 0123677788888 444 788999
Q ss_pred HHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCC
Q 009184 221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMH 296 (541)
Q Consensus 221 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~ 296 (541)
.++.+|..++... +.........+++.+..++.++ +..++..++++++.+...-..... .....-+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999753 2222334466888889999877 789999999999987643322111 01111246666777788
Q ss_pred CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh--------
Q 009184 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH-------- 368 (541)
Q Consensus 297 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-------- 368 (541)
+++.++..++.+++.++...+......+..++++.++..+.+. ++.++..|++.++.++........ ...
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 306 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAI-EASEAAEQGRP 306 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHH-HHCCTTCSSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHH-hcccccccCCC
Confidence 8999999999999999876554322222226788888888887 899999999999999763211000 000
Q ss_pred --hchhhHHHHHhcCcHHHHHHHhhc-------CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChH
Q 009184 369 --VHAFSIIAVIEANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR 439 (541)
Q Consensus 369 --~~~~~~~~l~~~~~l~~L~~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~ 439 (541)
.....++.-.-..++|.++..+.. +++.+|..|+.+|..++........ ..+++.+...+.++++.
T Consensus 307 ~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHH
T ss_pred ccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChH
Confidence 000001010113467777777753 2467899999999998764321111 24567788888899999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184 440 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 440 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
++..++.+|..+....... .+...+ ...+..|..+..++++.|+..|.+.+.++...
T Consensus 382 ~r~aal~~l~~l~~~~~~~---------~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPS---------QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTT---------TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHH---------HHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999988632110 011111 34567788888889999999999999988653
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.54 E-value=2.3e-13 Score=144.01 Aligned_cols=287 Identities=16% Similarity=0.134 Sum_probs=198.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.+..+.+.|.++++.++..|++++.++.. + .+. ..+++.+..+|.+++ +.++..|+.++.++...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 45667777778888888888888887742 1 122 346888999999988 99999999999999987776432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC--------------CChhhHH
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML 219 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~--------------~~~~~~~ 219 (541)
++++.+..++.+.++.++..|+++|+.++..++.....+. ..++.++..|.+ ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 5788888999999999999999999999977664322222 367777776632 2467777
Q ss_pred HHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009184 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (541)
Q Consensus 220 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l 293 (541)
..++.+|..++...+ ......++.|..++. +.+..+...+++++..+... +. +.. .+++.|..+
T Consensus 252 ~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~~ 321 (618)
T 1w63_A 252 VRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHHH
Confidence 788888888886542 122334445555443 22456788888888876542 21 111 356677777
Q ss_pred hCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhh
Q 009184 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373 (541)
Q Consensus 294 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~ 373 (541)
+.++++.++..|+.+|+.++...+... ....+.++.++.++ +..+|..|+.+|..++.... +.
T Consensus 322 L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~--------- 384 (618)
T 1w63_A 322 LLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IR--------- 384 (618)
T ss_dssp HTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--TH---------
T ss_pred HhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HH---------
Confidence 888888888888888888887554322 13456677777777 78888888888888876321 22
Q ss_pred HHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 374 IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 374 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
. +++.|...+.+.+.+++..++.+|+.++.
T Consensus 385 --~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 385 --G-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp --H-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred --H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1 33556666666666777777777766664
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.50 E-value=4e-12 Score=146.01 Aligned_cols=404 Identities=13% Similarity=0.128 Sum_probs=266.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
.++.+++.+.+.|+..+..|+..|.+.+... ....+.-....+++.|++.|.+++ +.+|..|+.+|+.++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 4788999999999999999999999877542 111111112346888999998777 999999999999999755441
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh------HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~ 227 (541)
.+ ..+++.|+..+.++++.+|..++.+|+.++...... ..... ...++.|+..+..+.+..++..++.++.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 135688888888888899999999999998433221 11112 2367888888843578899999999999
Q ss_pred hhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHH
Q 009184 228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPAL 306 (541)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al 306 (541)
.++...+..-......+++.+...+.++++.++..++.+++.++...... +. ..+++.++..|... ++.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99965422222245778888999999889999999999999998665432 11 25677788777543 346788889
Q ss_pred HHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386 (541)
Q Consensus 307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L 386 (541)
.+++.++...+...... -..+++.++..+.+. ++.+|..++++++.++....+.+. ..+ ..+++.+
T Consensus 236 ~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~-----------~~l-~~li~~l 301 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVY-----------PHV-STIINIC 301 (1230)
T ss_dssp HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCH-----------HHH-HHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHH-----------HhH-HHHHHHH
Confidence 99998886544322111 246889999999887 899999999999999874333222 111 0122333
Q ss_pred HHHhh-------------------------------------cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 009184 387 VALLE-------------------------------------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 429 (541)
Q Consensus 387 ~~~l~-------------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 429 (541)
+..+. +..+++|..|+.++..++.........+ -..+++.+
T Consensus 302 l~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l 379 (1230)
T 1u6g_C 302 LKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPAL 379 (1230)
T ss_dssp TTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHH
T ss_pred HHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHH
Confidence 22221 1135689999999999886432111222 24577888
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHhhHhhhh-cCC-------CCc-chhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHH
Q 009184 430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKN-LGN-------TDV-NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 500 (541)
Q Consensus 430 ~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~-~~~-------~~~-~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~i 500 (541)
...+.+.++.++..++.++..++........ ..+ .+. ..+...+ ...+..+.....++++.++..+...
T Consensus 380 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~ 457 (1230)
T 1u6g_C 380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNM 457 (1230)
T ss_dssp HSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHH
Confidence 8888888899999999999888764211000 000 000 0001111 1234445555667788877777766
Q ss_pred HHHhCC
Q 009184 501 LETYWL 506 (541)
Q Consensus 501 l~~~~~ 506 (541)
+..+..
T Consensus 458 L~~l~~ 463 (1230)
T 1u6g_C 458 LTELVN 463 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.42 E-value=8.8e-12 Score=113.15 Aligned_cols=187 Identities=21% Similarity=0.180 Sum_probs=157.6
Q ss_pred cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (541)
Q Consensus 115 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 194 (541)
.+.++.|+.+|.+++ +.++..|+++|+.+.. .++++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457999999999887 9999999999998764 2568999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
.+.++.|+..| .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23578888888 78889999999999998853 3578999999999999999999999999853
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (541)
Q Consensus 275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (541)
...++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2467889999999999999999999999853 23567788888888 89999999999999
Q ss_pred HhcC
Q 009184 355 ITAG 358 (541)
Q Consensus 355 l~~~ 358 (541)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9764
No 59
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.41 E-value=1.6e-10 Score=121.98 Aligned_cols=328 Identities=13% Similarity=0.102 Sum_probs=228.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
.....+++.+.+++...+..+.-.+..++.. ++ +.++- +++.+.+=|++++ +.++..|+.+|+++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NS--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CH--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--Cc--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence 4788999999999999999888888887643 22 21111 3667777788888 9999999999999965 5544
Q ss_pred HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184 153 KVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 230 (541)
.. +++.+.+++ .+.++.+|..|+.++.++....|+ .+...+.++.+..+| .+.++.++.+++.++..++
T Consensus 145 ~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 145 EA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence 43 468889999 889999999999999999875553 222246888899988 7889999999999999999
Q ss_pred cCCCCCChhhhhchHHHHH----HhhccC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHH
Q 009184 231 RGKPQPPFDQVSPALPALA----HLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAE 292 (541)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~----~lL~~~-------------d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~ 292 (541)
...+. .....+|.++ .++... ++-.+...+..+..++... ++....+.+ ++..++.
T Consensus 216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~ 289 (621)
T 2vgl_A 216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN 289 (621)
T ss_dssp HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence 86532 2234445444 443221 5778888888888887543 333332322 4444443
Q ss_pred hhC---------CCCh--hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184 293 FLM---------HPSP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (541)
Q Consensus 293 lL~---------~~~~--~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (541)
.+. +.+. .+...|++++..+.. .+... ..++..|..+|.++ ++.+|..|+.+|..++...+.
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~-----~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLL-----VRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHH-----HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHH-----HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc
Confidence 321 1122 778888888888753 22222 13566788888877 899999999999999875432
Q ss_pred HHHHHHhhchhhHHHHHhcCcHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHH
Q 009184 362 QIQVIMHVHAFSIIAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 440 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 440 (541)
.. . +. ...+.++..+. ++|..++..++..|..++.. ..... ++..|...+...|.++
T Consensus 363 -~~-----------~-~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~ 420 (621)
T 2vgl_A 363 -HE-----------A-VK-THIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSI 420 (621)
T ss_dssp -HH-----------H-HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHH
T ss_pred -HH-----------H-HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHH
Confidence 11 1 11 45677788888 88899999999999999752 33333 3455666666667776
Q ss_pred HHHHHHHHHHHHH
Q 009184 441 VTVCLEGLENILK 453 (541)
Q Consensus 441 ~~~~l~~L~~l~~ 453 (541)
+..++..+..+..
T Consensus 421 ~~~~v~~I~~la~ 433 (621)
T 2vgl_A 421 REEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.40 E-value=1e-11 Score=111.84 Aligned_cols=184 Identities=22% Similarity=0.190 Sum_probs=157.2
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 45889999999998 9999999999998764 2468999999999999999999999998842
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 275 (541)
...++.|+..| .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 13578888888 77899999999999998753 3578899999999999999999999998853
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (541)
Q Consensus 276 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (541)
.+.++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|.++|.++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 2577889999999999999999999999842 23567788888888 899999999999987
Q ss_pred h
Q 009184 356 T 356 (541)
Q Consensus 356 ~ 356 (541)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.40 E-value=1.6e-11 Score=141.00 Aligned_cols=397 Identities=12% Similarity=0.128 Sum_probs=256.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc----HHHHHhcCCHHHHHHhhcC-CCcHHHHHHHHHHHHHHhcCC
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~i~~g~i~~Lv~lL~~-~~~~~i~~~a~~~L~~l~~~~ 148 (541)
.++.++..+.++++.+|..|+.++..++..-.... ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 46677778888888889999999998876532220 1111224579999999984 55 899999999999998522
Q ss_pred hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (541)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 228 (541)
+....... ..+++.|+..+.++++.+|..|+.+|+.++...+. ..+ ...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11100000 23567788888888999999999999999965442 122 23577788777544445677788888888
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC------------
Q 009184 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------ 296 (541)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~------------ 296 (541)
++...+..-......++|.+...+..++++++..+++++..++........... ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 887643322234578999999999988899999999999888754332211111 1344444444421
Q ss_pred -------------------------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184 297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (541)
Q Consensus 297 -------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (541)
..+.++..|+.+++.++...+.....++ ..+++.++..+.+. ++.+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1256788999999999875443333333 46778888888777 88999999999
Q ss_pred HHHHhcC--C-----------------hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184 352 VSNITAG--N-----------------REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 352 L~nl~~~--~-----------------~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 412 (541)
+..++.. . ..... .++ ..+++.+...+.+.++.+|..++.++..++...
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ-----------SQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHH-----------HHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccccCccccccccchHHHHH-----------HHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 8888751 1 11111 222 246777777788889999999999999887643
Q ss_pred CHHHHHHHHHcCChHHHhhhcCCCCh--HHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCC
Q 009184 413 THEQIKFLVIQGCIKPLCDLLVCPDP--RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 490 (541)
Q Consensus 413 ~~~~~~~l~~~~~i~~L~~lL~~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~ 490 (541)
......+ -..+++.+...|..+.+ .++..++..+..++..... ..+...+. ..+..|.....+.+
T Consensus 466 ~~~l~~~--l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~---------~~~~~~l~--~llp~L~~~l~d~~ 532 (1230)
T 1u6g_C 466 PGALTQH--IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP---------QVFHPHVQ--ALVPPVVACVGDPF 532 (1230)
T ss_dssp TTTTGGG--HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG---------GGGHHHHT--TTHHHHHHHHTCSS
T ss_pred hhhhHHH--HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH---------HHHHhHHH--HHHHHHHHHHcccc
Confidence 2111011 12357788888887654 7888888888877753211 11122221 23455555555566
Q ss_pred HHHHHHHHHHHHHh
Q 009184 491 AEIYEKSVKLLETY 504 (541)
Q Consensus 491 ~~i~~~a~~il~~~ 504 (541)
..+...|...+..+
T Consensus 533 ~~v~~~al~~l~~l 546 (1230)
T 1u6g_C 533 YKITSEALLVTQQL 546 (1230)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66665555544433
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.40 E-value=5.3e-11 Score=107.05 Aligned_cols=184 Identities=22% Similarity=0.224 Sum_probs=156.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCCh
Q 009184 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (541)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 238 (541)
+..+.++++|.++++.++..|+++|+.+.. .+.++.|+..+ .++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 456889999999999999999999998752 23678899999 78899999999999998743
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch
Q 009184 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (541)
Q Consensus 239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 318 (541)
...++.|..++.++++.++..++++|+.+.. ...++.|+.++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3578999999999999999999999998753 2467889999999999999999999999853
Q ss_pred hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHH
Q 009184 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK 398 (541)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 398 (541)
...++.|..++.+. ++.+|..|+++|+.+. .+. .++.|..++.++++.++
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~--------------------~~~~L~~~l~d~~~~vr 186 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER--------------------VRAAMEKLAETGTGFAR 186 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH--------------------HHHHHHHHHHHCCHHHH
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh--------------------HHHHHHHHHhCCCHHHH
Confidence 35678899999988 9999999999999993 232 35677888888999999
Q ss_pred HHHHHHHHHhc
Q 009184 399 KEAAWAISNAT 409 (541)
Q Consensus 399 ~~a~~aL~nl~ 409 (541)
..|..+|.++-
T Consensus 187 ~~A~~aL~~l~ 197 (201)
T 3ltj_A 187 KVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 63
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.39 E-value=1.8e-11 Score=111.04 Aligned_cols=188 Identities=20% Similarity=0.181 Sum_probs=157.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (541)
+.++.+++.|.++++.++..|+..|..+.. .+.++.|+++|.+++ +.++..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 478999999999999999999999988642 246899999999887 9999999999999864
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
.+.++.|+.+|.++++.++..++++|+.+.. .+.++.|+..+ .++++.++..++++|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence 2468999999999999999999999999852 23578888888 88899999999999999843
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
...++.|..++.++++.++..++++|..+.. ...++.|..++.++++.++..|..+|+++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999853 24567788888889999999999999998
Q ss_pred hcCCc
Q 009184 313 VTGDD 317 (541)
Q Consensus 313 ~~~~~ 317 (541)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87554
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.29 E-value=1.2e-10 Score=122.85 Aligned_cols=366 Identities=12% Similarity=0.112 Sum_probs=237.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhh--cCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL--LREDYPQLQFEAAWALTNIASGTSEH 151 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL--~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (541)
.+..+.+.+.++++.++-.|++++.++.. +. +. ..+++.+.++| .+.+ +.++..|+.++..+...+++.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e---~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----RE---MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH---HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH---HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence 45666677888889888889999888742 11 22 23678888888 7777 999999999999999866654
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHH----hhcC--CC----------h
Q 009184 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNG--QP----------K 215 (541)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~----~l~~--~~----------~ 215 (541)
.. ..+.++.+..+|.++++.++..|+.++..++...+.. . ...++.++. ++.. .+ +
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 32 2478999999999999999999999999998766531 1 112333333 3311 11 4
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009184 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA 284 (541)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL---------~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 284 (541)
+-.+..++..+..++.............+++.++..+ ++.+ ..|...++.++..+.. .++...
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~----- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV----- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----
Confidence 5677777777777764321111111223334333322 1223 3788899999988863 222222
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCChHHH
Q 009184 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQI 363 (541)
Q Consensus 285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (541)
.++..|..+|.++++.++..++.+|..++...+.. ..+ ......++..|. ++ +..+|..++.+|..++. +..+
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~~--~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-EAV--KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HHH--HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-HHH--HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence 35677888998899999999999999999765421 122 346777888888 77 89999999999999974 4455
Q ss_pred HHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHH
Q 009184 364 QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~ 443 (541)
. .++..|...+...+.+++..++.+++.++..-.+.. .-+++.|++++......+...
T Consensus 403 ~----------------~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~e 460 (621)
T 2vgl_A 403 Q----------------QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEE 460 (621)
T ss_dssp H----------------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSH
T ss_pred H----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHH
Confidence 5 356678888888899999999999998874211000 123556666665544334444
Q ss_pred HHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Q 009184 444 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLETYW 505 (541)
Q Consensus 444 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~-~~~~i~~~a~~il~~~~ 505 (541)
+...+..++...+..+. +. ....++.+... ....+...+.|++.+|-
T Consensus 461 v~~~l~~ii~~~~~~~~--------~~-------~~~l~~~l~~~~~~~~li~~~~wilGEy~ 508 (621)
T 2vgl_A 461 VWYRVIQIVINRDDVQG--------YA-------AKTVFEALQAPACHENLVKVGGYILGEFG 508 (621)
T ss_dssp HHHHHHHHHGGGCSCHH--------HH-------HHHHHHHHTSSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChhHHH--------HH-------HHHHHHHHcCccchHHHHHHHHHHhcchH
Confidence 44555555543322111 11 01112233322 23456677788888884
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.15 E-value=6.2e-09 Score=86.90 Aligned_cols=216 Identities=14% Similarity=0.163 Sum_probs=178.4
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC
Q 009184 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (541)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 237 (541)
..++..++.+|.++-..++.+|+..+.+++..-++..+. .+..|+.++.++....+......++..++.-.|
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence 356788999999988999999999999999888875444 356788888788888888888999999987654
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (541)
Q Consensus 238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 317 (541)
..+.+.+|.+..-..-.|++++.....+|..++..++.... +++.-+..++.+++..-+..|+..++.+.....
T Consensus 103 -e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 103 -ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp -HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred -HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 56688899998888889999999999999999988776544 567788999999998888899999998877665
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI 397 (541)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 397 (541)
.+. ...+|.|..+|.+. +.-||..|.-+|.+++..++.... ++..-+.-+.+.+..+
T Consensus 177 ~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk-----------------ii~~kl~e~~D~S~lv 233 (253)
T 2db0_A 177 KYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK-----------------VVIKRLEELNDTSSLV 233 (253)
T ss_dssp HHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH-----------------HHHHHHHHCCCSCHHH
T ss_pred ccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH-----------------HHHHHHHHhcCcHHHH
Confidence 444 46789999999999 999999999999999998888554 3344556677778888
Q ss_pred HHHHHHHHHHhcc
Q 009184 398 KKEAAWAISNATS 410 (541)
Q Consensus 398 ~~~a~~aL~nl~~ 410 (541)
+..+-.+|+.++.
T Consensus 234 ~~~V~egL~rl~l 246 (253)
T 2db0_A 234 NKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.11 E-value=2.6e-09 Score=114.11 Aligned_cols=217 Identities=16% Similarity=0.121 Sum_probs=156.2
Q ss_pred hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-Ch
Q 009184 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGD-SP 191 (541)
Q Consensus 114 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~-~~ 191 (541)
+..++| +++.|++++ +..|..|+++|++|+. +++.+..+...|++..+ ..+|.+++.++++.|+++|.||+.+ .+
T Consensus 33 ~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 344555 557789988 9999999999999997 68888888888888765 4578889999999999999999954 56
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (541)
Q Consensus 192 ~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 271 (541)
...+.+...|++++|+.++.+ ....+..+......... .....+ .++...++++|.+|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~ 168 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLA 168 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHh---------hHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHH
Confidence 788888999999999998831 11222222111100000 001111 123455667777788
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCC---CChhhHHHHHHHHhHhhcCCchhHHHHHhcCch---HHHHHhhcCCCchhHH
Q 009184 272 DGTNDKIQAVIEAGVFPRLAEFLMH---PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIK 345 (541)
Q Consensus 272 ~~~~~~~~~~~~~g~l~~L~~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~ 345 (541)
..+++....+...+.++.|+.+|.+ ....++..|+.+|..++..++...+.+.+.+.. ..+..+..+. ...+
T Consensus 169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~--~~~~ 246 (684)
T 4gmo_A 169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT--DPRA 246 (684)
T ss_dssp HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS--CTTH
T ss_pred hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC--cHHH
Confidence 7777777778888999999998843 245799999999999999999888888776643 3344433443 3457
Q ss_pred HHHHHHHHHHh
Q 009184 346 KEACWTVSNIT 356 (541)
Q Consensus 346 ~~a~~~L~nl~ 356 (541)
..++++|.|+.
T Consensus 247 ~la~giL~Ni~ 257 (684)
T 4gmo_A 247 VMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHh
Confidence 78999999985
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.05 E-value=1.6e-08 Score=107.98 Aligned_cols=273 Identities=14% Similarity=0.138 Sum_probs=191.9
Q ss_pred CHHHHHHhhc---CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-------cHHHHHHHHHHHHH
Q 009184 74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN 143 (541)
Q Consensus 74 ~l~~l~~~L~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-------~~~i~~~a~~~L~~ 143 (541)
++..+-+.|. ++++.++.-|+..|.-+-.+.. .. ++..|...|.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566666776 6678888888888887765431 11 3666777776543 36788899999999
Q ss_pred HhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHH
Q 009184 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (541)
Q Consensus 144 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~ 223 (541)
+..|+... .+++.|..++..++..+++.|+.+||.+...... ..++..|+..+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 87765321 2356778888777777888999999987533321 113456666654566788999999
Q ss_pred HHHHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHh--ccCChHHHHHHHHhCcHHHHHHhh-CCCCh
Q 009184 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYL--SDGTNDKIQAVIEAGVFPRLAEFL-MHPSP 299 (541)
Q Consensus 224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l--~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~ 299 (541)
.+|..+..+. ...++.++..|. +.++-++..++.+++-- ..++... ++.|+..+ .+.+.
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 9999887664 344566666665 46788888887777543 3344332 34344443 56677
Q ss_pred hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHh
Q 009184 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIE 379 (541)
Q Consensus 300 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~ 379 (541)
.++..|+.+||.+..+.++ .++.++.+|.+..++.+|..|+++|+.++.+++.. .
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-~--------------- 647 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-S--------------- 647 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-H---------------
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-H---------------
Confidence 8999999999999887753 24455555544449999999999999999876642 1
Q ss_pred cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC
Q 009184 380 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 380 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 413 (541)
++..|..++.+.+..|+..|+.+|+.+..+.+
T Consensus 648 --aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 648 --AIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp --HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred --HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 45567777888899999999999999987644
No 68
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.98 E-value=4.3e-08 Score=94.32 Aligned_cols=277 Identities=13% Similarity=0.071 Sum_probs=163.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (541)
..+.+++.+.++|...+.-+.-.+..+... .++.+ =++..|.+=+++++ +-++-.|+++|++|.. ++...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 467778899999999999888888777644 22322 14778888889988 9999999999999987 33333
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 233 (541)
. +.+.+.+.+.+.++.++..|+.+...+....|+. . .+++..+-.++ .+.++.++.+|+.++..++..+
T Consensus 139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 3 3577888999999999999999999999888763 2 25788888888 7788999999999999998753
Q ss_pred CCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184 234 PQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (541)
Q Consensus 234 ~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 309 (541)
...+..++..+... ++-.+...+..+..++..+ +. ....+++.+...|++.++.|...|+++|
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 11334444444332 4555555555555555433 21 2236778888899999999999999999
Q ss_pred hHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHH
Q 009184 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL 389 (541)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~ 389 (541)
..+....... . ..++..|..++.++ ++.+|..|+..|..++...|..++ ..-..+.++
T Consensus 275 ~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~----------------~~n~~ie~l 332 (355)
T 3tjz_B 275 VNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVT----------------ACNLDLENL 332 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHH----------------HHHHHHHHH
Confidence 9886532221 1 24466677788888 999999999999999987776554 233456677
Q ss_pred hhcCchhHHHHHHHHHH
Q 009184 390 LENAEFDIKKEAAWAIS 406 (541)
Q Consensus 390 l~~~~~~v~~~a~~aL~ 406 (541)
+.+++..+...|+..|.
T Consensus 333 i~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 333 VTDANRSIATLAITTLL 349 (355)
T ss_dssp -----------------
T ss_pred ccCCcHhHHHHHHHHhh
Confidence 78888777776665554
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.95 E-value=4.1e-08 Score=85.84 Aligned_cols=226 Identities=17% Similarity=0.158 Sum_probs=171.4
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 321 (541)
.+.+..|.++|...|+.++..++.+|..+....++......-..+++.++.++.+.+..+...|++||+.+..+.+-.-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45788899999999999999999999999866444444444447899999999999999999999999999988763333
Q ss_pred HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA 401 (541)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 401 (541)
.+. .+...|..++.++ ++-++.+|+-.++-+--.+. .. +++..+..++.+.+.+++..+
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~--~~----------------~V~~~l~sLl~Skd~~vK~ag 170 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLED--SK----------------LVRTYINELVVSPDLYTKVAG 170 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC--CH----------------HHHHHHHHHHTCSSHHHHHHH
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc--hH----------------HHHHHHHHHHhCCChhHHHHH
Confidence 332 3566788999977 89999999999999833221 11 356678888899999999999
Q ss_pred HHHHHHhccCCC-HHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHH
Q 009184 402 AWAISNATSGGT-HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE 480 (541)
Q Consensus 402 ~~aL~nl~~~~~-~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 480 (541)
+.++.+++.... ++. -.++++-+-++|+++|+.++..++.++..++..--. .|..- +-.+...
T Consensus 171 l~~L~eia~~S~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~~~~---~~~~~~~ 234 (265)
T 3b2a_A 171 FCLFLNMLNSSADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------ENVKI---ELLKISR 234 (265)
T ss_dssp HHHHHHHGGGCSSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SCCHH---HHHHHHH
T ss_pred HHHHHHhhcccCCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------HhHHH---HHHHHHH
Confidence 999999987542 221 235788888999999999999999999999865211 11111 1134455
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHh
Q 009184 481 KIESLQ-THDNAEIYEKSVKLLETY 504 (541)
Q Consensus 481 ~l~~L~-~~~~~~i~~~a~~il~~~ 504 (541)
....|. -...|.++.+|..+-+..
T Consensus 235 ~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 235 IVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp HHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Confidence 566776 678899999998776543
No 70
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.90 E-value=7.4e-09 Score=110.65 Aligned_cols=197 Identities=15% Similarity=0.087 Sum_probs=148.8
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH-HHhhCCCChhhHHHHHHHHhHhhcCC-chh
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL-AEFLMHPSPSVLIPALRTVGNIVTGD-DMQ 319 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L-~~lL~~~~~~v~~~al~~L~nl~~~~-~~~ 319 (541)
..++|. +..|++++++.+..||++|++|+. ++.....+...|++..+ ..+|.+++..++..|+++|+||+... ...
T Consensus 34 ~~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPV-LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHH-HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHH-HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 345554 466899999999999999999996 45556667888888765 56789999999999999999999754 466
Q ss_pred HHHHHhcCchHHHHHhhcCCC-------------c-------hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHh
Q 009184 320 TQCVIEYQALPCLLNLLSGNY-------------K-------KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIE 379 (541)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~ 379 (541)
...++..|+++.|..++.... . ..+...++++|.+++.++.+... .+..
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~-----------~v~~ 180 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHE-----------AVAT 180 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-----------HHHT
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH-----------HHHh
Confidence 677889999999999885310 0 12345678889999988888888 8888
Q ss_pred cCcHHHHHHHhhcC---chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChH---HHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 380 ANIIGPLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK---PLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 380 ~~~l~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~---~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
.+.++.|+..|.+. ..+++..|+.+|.+++.. +.+....+.+.+... .+..+.+..++ .+..++..|.+++.
T Consensus 181 ~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 181 KQTILRLLFRLISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT 258 (684)
T ss_dssp CHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence 89999999988653 368999999999999985 667777777765433 33333334443 34556788888764
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.85 E-value=4.8e-08 Score=94.00 Aligned_cols=276 Identities=13% Similarity=0.066 Sum_probs=165.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhh
Q 009184 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (541)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 240 (541)
...+++++.+++..++..+...+.+++...++ .++ ++..+.+-+ +++++-++..|+.+++++.... .
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~~------m 136 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDM-TGKEDSYRGPAVRALCQITDST------M 136 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHH-HSSCHHHHHHHHHHHHHHCCTT------T
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhc-CCCcHhHHHHHHHHHhcCCCHH------H
Confidence 35577899999999999999999998866433 222 467777878 6788999999999999997653 5
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (541)
Q Consensus 241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 320 (541)
...+.+.+...+.+.++.|+..|+.+...+....++... ++++.+.+++.+.++.+...|+.++..+...+..
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 577888899999999999999999999999988776432 7899999999999999999999999988764422
Q ss_pred HHHHhcCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCC-hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184 321 QCVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGN-REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI 397 (541)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 397 (541)
.+..|+..+.... ++-.+......++.++..+ +... ..+++.+...|++.++-|
T Consensus 210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~----------------~~~~~~l~~~L~~~~~aV 266 (355)
T 3tjz_B 210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD----------------SPLFDFIESCLRNKHEMV 266 (355)
T ss_dssp -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------------------CCCCCSSHHH
T ss_pred -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH----------------HHHHHHHHHHHcCCChHH
Confidence 2333444443321 3433333334333333333 2222 246677777788889999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcc
Q 009184 398 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE 477 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 477 (541)
.-+|+.++..+.... ... -..++..|..++.++++.++-.++..|..+....+..- ..+
T Consensus 267 vyEa~k~I~~l~~~~-~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v--------------~~~- 325 (355)
T 3tjz_B 267 VYEAASAIVNLPGCS-AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV--------------TAC- 325 (355)
T ss_dssp HHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------
T ss_pred HHHHHHHHHhccCCC-HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH--------------HHH-
Confidence 999999999985521 111 13457778888889999999999999998887665432 222
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHH
Q 009184 478 GLEKIESLQTHDNAEIYEKSVKLL 501 (541)
Q Consensus 478 ~~~~l~~L~~~~~~~i~~~a~~il 501 (541)
-..|+.+..++|..|...|...+
T Consensus 326 -n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 326 -NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------------------------
T ss_pred -HHHHHHHccCCcHhHHHHHHHHh
Confidence 24588889999999988886533
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.83 E-value=1.4e-06 Score=72.96 Aligned_cols=217 Identities=16% Similarity=0.175 Sum_probs=165.3
Q ss_pred HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 009184 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSP 191 (541)
Q Consensus 113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 191 (541)
++..++..++.+|.++- +.++..|+.++..++...++....++ ..|+-+++ ++.-.+......++|.++...|
T Consensus 29 ~d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred hhHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 34568899999999887 99999999999999998887766553 45555654 4556666668899999997777
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (541)
Q Consensus 192 ~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 271 (541)
+.-+. .++.+..-. .-.++.++.+..++|-.+.+..| ....+++.-+..++.++|..-+..++..++.+.
T Consensus 103 e~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 103 ELVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HHHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HHHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 53222 456666555 55699999999999999998764 445667778888998888766777777777766
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (541)
Q Consensus 272 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (541)
.+..... ...+|+|..+|.+.+.-++..|+.+|++++..++..+..+. ..+.-+.+. +..+++..-..
T Consensus 173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~eg 240 (253)
T 2db0_A 173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEG 240 (253)
T ss_dssp TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHH
T ss_pred ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHH
Confidence 6554332 26899999999999999999999999999998887653332 345556666 77788888888
Q ss_pred HHHHhc
Q 009184 352 VSNITA 357 (541)
Q Consensus 352 L~nl~~ 357 (541)
|+.++.
T Consensus 241 L~rl~l 246 (253)
T 2db0_A 241 ISRLLL 246 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.80 E-value=9e-07 Score=94.69 Aligned_cols=273 Identities=16% Similarity=0.121 Sum_probs=185.8
Q ss_pred HHHHHHhhcCCC--------HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 75 LPVMVAGVWSND--------SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 75 l~~l~~~L~s~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
+..|.+.|.+++ +.++..|+..|.....+..++ .+++.|..+|.+++ ..++..|+.+|+-+-.
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 444555555433 556666777776554332111 24677888888776 6777889999998855
Q ss_pred CChhHHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184 147 GTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (541)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~ 225 (541)
|+... .++..|++.+ ...+..+++.++.+|+.+....++ .++.+++.|....++.++..++.+
T Consensus 502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44322 1234455443 456789999999999998766654 467788888667788888888888
Q ss_pred HHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHH
Q 009184 226 LSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLI 303 (541)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~ 303 (541)
+.--+.+..+ ...++.|++.+. +.+..++..|..+|+.+..+.+ ..++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHH
Confidence 7755544321 344555555543 5578899999999998875554 3456666644 678899999
Q ss_pred HHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH----HHHHHhhchhhHHHHHh
Q 009184 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----IQVIMHVHAFSIIAVIE 379 (541)
Q Consensus 304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~~~~~~~~~~~~l~~ 379 (541)
.|..+||.++.+++.. .+++.|..++.+. +..||..|+.+|+.+..++.+. +.
T Consensus 631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva--------------- 687 (963)
T 4ady_A 631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVA--------------- 687 (963)
T ss_dssp HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHH---------------
T ss_pred HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHH---------------
Confidence 9999999999887642 2455677788777 9999999999999999865443 22
Q ss_pred cCcHHHHHHHhhc--CchhHHHHHHHHHHHhccC
Q 009184 380 ANIIGPLVALLEN--AEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 380 ~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~ 411 (541)
+++..|...... .++..+--+..|.+-+-.+
T Consensus 688 -~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 688 -DINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp -HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred -HHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 244456666654 3566777777777666443
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.73 E-value=2e-07 Score=86.08 Aligned_cols=185 Identities=15% Similarity=0.216 Sum_probs=142.6
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009184 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (541)
Q Consensus 204 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 282 (541)
+.+...+ .+.+...+..++..|..++.+.+.........+++.|...+. +.+..++..++.++..++..-........
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4477777 788999999999999999876322112223677888999995 88999999999999999854222222222
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChH
Q 009184 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NRE 361 (541)
Q Consensus 283 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 361 (541)
..+++.++..+.+.+..++..|..+|..++.... . ..+++.+...+.+. ++.+|..++..|+.+... .+.
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 2588999999999999999999999999987543 1 13577889999988 999999999999997653 333
Q ss_pred H-HHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 362 Q-IQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 362 ~-~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
. .. ..+. .++|.|+..+.+.++++|..|..+++.+..
T Consensus 168 ~~~~-----------~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNK-----------KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCH-----------HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccH-----------HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 12 2222 689999999999999999999999999875
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.66 E-value=8e-08 Score=88.83 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=141.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 241 (541)
+.+.+.+.+.+...|..++..|..++...+....... ..+++.|...+.++.+..++..++.++..|+..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4578888899999999999999999854322110001 124566666673378899999999999999965422222345
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-ch-h
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DM-Q 319 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~-~ 319 (541)
..++|.++..+.+.+..++..++.++..++.... .. .+++.+...|++.++.++..++..|+.+.... +. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7789999999999999999999999999886543 11 36788889999999999999999999976543 22 1
Q ss_pred HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
....+ ..+++.|..+|.+. ++++|..|..+++.++.
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 22233 36889999999988 99999999999999986
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.59 E-value=4e-07 Score=84.15 Aligned_cols=190 Identities=13% Similarity=0.167 Sum_probs=139.7
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHH-HhcCChhHHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH-
Q 009184 121 FVEFLLREDYPQLQFEAAWALTN-IASGTSEHTKVVID-HGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDS--PRCR- 194 (541)
Q Consensus 121 Lv~lL~~~~~~~i~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~--~~~r- 194 (541)
+.+.+++.+ +.-|.+|+..|.. ++.+.++......+ ..++..|.+.+ ...+..++..|+.+|+.++.+- +.+.
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 456678887 9999999999999 87643322100000 13466777888 6789999999999999998422 2232
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 273 (541)
..... +++.++..+ ++....++..+..++..++..- +.........+++.|...|.+.++.++..++.+|..++..
T Consensus 100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 33222 588889988 6677889999999999998864 2211112567899999999999999999999999988754
Q ss_pred Ch---HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184 274 TN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 274 ~~---~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
.. ......+...+++.+..++.+.+..+|..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 43 333333424899999999999999999999999998874
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.57 E-value=2.1e-06 Score=75.19 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=149.2
Q ss_pred CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (541)
Q Consensus 116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (541)
+.+..|..+|...+ +.++..|+.+|..+...-+.......-...++.++.++.+.+..+.-.|+.+|..+..+.|-..+
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 46888999998888 99999999999999986444444443345799999999999999999999999999987774433
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 275 (541)
.... .+.++..++ ...++-+...++..+..+ .+ ......++..+..++.+.|.+++..++.++.+++..+.
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgkl---kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKL---QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHC---CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcC---Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 3333 467788888 688899999999999988 11 12246678889999999999999999999999986543
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (541)
Q Consensus 276 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 316 (541)
+. .++ .+++.-+-.+|++.++.++..|+.++-.+.+..
T Consensus 183 D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 21 011 256777888999999999999999999998764
No 78
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.54 E-value=3.1e-05 Score=76.24 Aligned_cols=321 Identities=11% Similarity=0.106 Sum_probs=191.3
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCCh-HHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 158 HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGL-VPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 158 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---~~r~~i~~~g~i-~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
..++..++.+|.. ...++...++..+..+..+++ .....+...... ..+........+.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 4566788888875 778888989999988887766 222232322211 22333332444555556666666666544
Q ss_pred CCCCChhhhhchHH--HHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhhC----C-------
Q 009184 233 KPQPPFDQVSPALP--ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLM----H------- 296 (541)
Q Consensus 233 ~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L~~lL~----~------- 296 (541)
.+. .......++. -+...|.. ++...+.-++.+|..|......+ ..+.+. +.++.++.++. +
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 2333333444 34444544 23444556777777777655433 334433 24555554332 1
Q ss_pred ----C--ChhhHHHHHHHHhHhhcCCchhHHHHHhcCch--HHHHHhhcCCCchhHHHHHHHHHHHHhcCCh----HHHH
Q 009184 297 ----P--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL--PCLLNLLSGNYKKSIKKEACWTVSNITAGNR----EQIQ 364 (541)
Q Consensus 297 ----~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~ 364 (541)
+ ...++..++.|+.-++...+ ....+...++. ..|+.+++.....++.+-++.+|.|+....+ ..+.
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 24567788889988876444 55555555543 5667777766578899999999999998542 1122
Q ss_pred HHHhhchhhHHH-HHhcCcHHHHHHHhhc---CchhHHHHHHHHHHHh---------------------ccCCCHHHH-H
Q 009184 365 VIMHVHAFSIIA-VIEANIIGPLVALLEN---AEFDIKKEAAWAISNA---------------------TSGGTHEQI-K 418 (541)
Q Consensus 365 ~~~~~~~~~~~~-l~~~~~l~~L~~~l~~---~~~~v~~~a~~aL~nl---------------------~~~~~~~~~-~ 418 (541)
. ++..++ +.++..|.. .|+++....-...-.+ ..+ +|-+. .
T Consensus 313 -----------~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W-SP~H~se 379 (480)
T 1ho8_A 313 -----------QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDN 379 (480)
T ss_dssp -----------HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCH
T ss_pred -----------HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc-CCCccch
Confidence 2 223344 445555554 3555543322221111 111 11111 1
Q ss_pred HHH--------H--cCChHHHhhhcCC----------CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcch
Q 009184 419 FLV--------I--QGCIKPLCDLLVC----------PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 478 (541)
Q Consensus 419 ~l~--------~--~~~i~~L~~lL~~----------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 478 (541)
.+. + ..+++.|+.+|++ .|+.+...|+.=|..+++..+.. +..+++.||
T Consensus 380 ~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-----------r~i~~~lg~ 448 (480)
T 1ho8_A 380 GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-----------IDVLDKTGG 448 (480)
T ss_dssp HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-----------HHHHHHHSH
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-----------hHHHHHcCc
Confidence 222 1 1347888888873 36778888888888888877653 557888999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184 479 LEKIESLQTHDNAEIYEKSVKLLETYW 505 (541)
Q Consensus 479 ~~~l~~L~~~~~~~i~~~a~~il~~~~ 505 (541)
.+.+-+|.+|+|++|+..|..-++++.
T Consensus 449 K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 449 KADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988777653
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.52 E-value=9.3e-07 Score=81.67 Aligned_cols=194 Identities=10% Similarity=0.096 Sum_probs=140.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCChhhHHHHHh-cCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC-CCCh-
Q 009184 163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF- 238 (541)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~r~~i~~-~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~- 238 (541)
.+...+.+.+..-|..++..|.. ++...+.......+ ...+..|...+.++.+..++..++.++..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788999999999999999 87543332100001 12355666667567788999999999999997643 2222
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch
Q 009184 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (541)
Q Consensus 239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 318 (541)
.....++|.++..+......|+..+..++..++...+.....-.-..+++.|...|++.++.++..++.+|+.++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 45677899999999988899988888888777643211000000013677888899999999999999999999876553
Q ss_pred ---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 319 ---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
.....+...+++.|..++.+. ++.+|..|..+++.++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 222333357999999999998 99999999999999986
No 80
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.46 E-value=7.9e-05 Score=82.64 Aligned_cols=340 Identities=11% Similarity=0.074 Sum_probs=189.0
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHH-HhhcCCCcHHHHHHHHHHHHHHhcCC---h--hHHHHHHh
Q 009184 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID 157 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv-~lL~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~i~~ 157 (541)
+.++++...++.++...++ .-++..+++.++++.+. .+|.. ++++..|+.||..+.... + +....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 3456677778888888875 44577788889999999 88853 789999999999998732 2 12211111
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhCC-------ChhhHHHHHhcCChHHHHHhhcCCC
Q 009184 158 --HGAVPIF--------------VKLLYSPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQP 214 (541)
Q Consensus 158 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~~-------~~~~r~~i~~~g~i~~Ll~~l~~~~ 214 (541)
.+.++.+ ...-...+.+.....+..+..+... .+..+..+. .++..++..- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 1111223466666666666554421 122222211 0123344432 456
Q ss_pred hhhHHHHHHHHHHhhhcCCC--CCChhhhh----chHHHHHHhhccCC--------------------hh-HHHHHH-HH
Q 009184 215 KLSMLRNATWTLSNFCRGKP--QPPFDQVS----PALPALAHLIHSND--------------------DE-VLTDAC-WA 266 (541)
Q Consensus 215 ~~~~~~~a~~~L~~l~~~~~--~~~~~~~~----~~l~~L~~lL~~~d--------------------~~-v~~~a~-~~ 266 (541)
+.++...++.....|....- ........ .+++.++.-+..+. ++ ...... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 78888888887777765321 11222233 34444444443322 00 111111 22
Q ss_pred HHHhccCC-hHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC----
Q 009184 267 LSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN---- 339 (541)
Q Consensus 267 L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~---- 339 (541)
|.+++.-. ++... -+++.+...+.. .+|..++.+++++|.++.+.......-.-..+++.|+.++.+.
T Consensus 437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 22222111 11111 123344444443 5799999999999999987765433233346788888888641
Q ss_pred CchhHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHH
Q 009184 340 YKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 416 (541)
Q Consensus 340 ~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~ 416 (541)
....++..++|++|..+. ..++... .++..|+..+..+++.++..|++++.+++..+....
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~~~~~~L~----------------~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l 575 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLR----------------TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF 575 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHCHHHHH----------------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHH----------------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 144566788999998876 2333333 356667777776778999999999999987433221
Q ss_pred HH--------HHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184 417 IK--------FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455 (541)
Q Consensus 417 ~~--------~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~ 455 (541)
.. ++ ..++..+...+..-+++-...+.+++..++...
T Consensus 576 ~~~~~~e~~p~~--~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 576 VIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred hccCCCCCchhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 10 11 112233333334445555667777777777653
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.40 E-value=0.00014 Score=71.61 Aligned_cols=320 Identities=11% Similarity=0.075 Sum_probs=192.3
Q ss_pred CHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCC---CcHHHHHhcC-CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS---PPIEEVIRSG-VVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 74 ~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~---~~~~~~i~~g-~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~ 148 (541)
....+++.|.. ...++....+..+..++... . .....+.+.. ....+.....+.+++-....+..+++.++..+
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC-cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 56778888874 66788888888888888763 2 1223333322 22223332233443555566666666665433
Q ss_pred hh---HHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHhhc-----------
Q 009184 149 SE---HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN----------- 211 (541)
Q Consensus 149 ~~---~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~i~~Ll~~l~----------- 211 (541)
+. ....++.. +-++..|.. ++...+..++.+|..+..... +|..+.+.+ .+++++.++.
T Consensus 157 ~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 157 LHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 22 11222211 134444544 344556678888888887655 888876543 3566654432
Q ss_pred -----CCChhhHHHHHHHHHHhhhcCCCCCChhhhhch--HHHHHHhhcc-CChhHHHHHHHHHHHhccCCh----HHHH
Q 009184 212 -----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ 279 (541)
Q Consensus 212 -----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~----~~~~ 279 (541)
......++..++.+++-|+...+........++ ++.|+..++. ..+++..-++.++.|+..... ....
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 111456788889999999887532222222222 3556666664 568899999999999987652 2222
Q ss_pred -HHHHhCcHHHHHHhhCC---CChhhHHHHHH-------HHhHhhc--------------CCchhHH-HHH---------
Q 009184 280 -AVIEAGVFPRLAEFLMH---PSPSVLIPALR-------TVGNIVT--------------GDDMQTQ-CVI--------- 324 (541)
Q Consensus 280 -~~~~~g~l~~L~~lL~~---~~~~v~~~al~-------~L~nl~~--------------~~~~~~~-~~~--------- 324 (541)
.++..++ ..++..|.. .++++..-.-. .+..+++ -++.+.. .+.
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 3333445 445555533 33333222111 1111111 1121211 111
Q ss_pred -hcCchHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc
Q 009184 325 -EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE 394 (541)
Q Consensus 325 -~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~ 394 (541)
+..++..|+.+|.+ +.++.+..-||.=++.++...|.... .+-+.|+=..+++++.++|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-----------i~~~lg~K~~VM~Lm~h~d 460 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-----------VLDKTGGKADIMELLNHSD 460 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-----------HHHHHSHHHHHHHHTSCSS
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-----------HHHHcCcHHHHHHHhcCCC
Confidence 23568889999973 22788899999999999998788776 6668899999999999999
Q ss_pred hhHHHHHHHHHHHhcc
Q 009184 395 FDIKKEAAWAISNATS 410 (541)
Q Consensus 395 ~~v~~~a~~aL~nl~~ 410 (541)
++||.+|+.|+..+..
T Consensus 461 ~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 461 SRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.38 E-value=6.1e-08 Score=80.16 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=92.8
Q ss_pred cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (541)
Q Consensus 115 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 194 (541)
...++.++.+|++++ +.++..|+++|+.+... .++.|+.+|.++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 456888999999888 89999999999876431 26889999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 270 (541)
..++.|+..+ .++++.++..++|+|..+.. ...++.|..++.++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2478888888 67889999999999998852 45788999999988999999999988653
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.34 E-value=1.6e-07 Score=77.70 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=93.5
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC
Q 009184 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (541)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 237 (541)
...++.|..+|.++++.+|..|+++|+.+... .++.|+..| .++++.++..++|+|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence 35678899999999999999999999876321 257888888 67899999999999998853
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (541)
Q Consensus 238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 312 (541)
...++.|..++.++++.|+..++|+|+.+.. .+.++.|..++.++++.++..|+.+|+.|
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3468899999999999999999999998862 13578888999999999999999999864
No 84
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.32 E-value=8.1e-05 Score=83.22 Aligned_cols=332 Identities=11% Similarity=0.002 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhc---------------CCCcHHHHHHHHHHHHHHhcCCh--h
Q 009184 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---------------REDYPQLQFEAAWALTNIASGTS--E 150 (541)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~---------------~~~~~~i~~~a~~~L~~l~~~~~--~ 150 (541)
.++..++.++...+.....+.. ....+++.+.. |. ..++++++..|+.++..+....+ +
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 6777888888776652101211 23445666666 41 11237899999999999997432 1
Q ss_pred HHHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhCCChh-hH-----------HHHHhcCChHHHHH
Q 009184 151 HTKVVIDHGAVPIFVK-------LLYSPS---DDVREQAVWALGNIAGDSPR-CR-----------DLVLSQGGLVPLLA 208 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~-------lL~~~~---~~v~~~a~~~L~nl~~~~~~-~r-----------~~i~~~g~i~~Ll~ 208 (541)
....+. .+++.++. .+...+ .+.....+..+..++..... +. ..+. ..++.++.
T Consensus 280 ~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~ 355 (971)
T 2x1g_F 280 YPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEILH 355 (971)
T ss_dssp CHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHH
T ss_pred cHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHH
Confidence 111111 12333332 123334 25666667777666533221 11 1111 13444444
Q ss_pred hhcC----CChhhHHHHHHHHHHhhhcCC--------CCCCh----hhhhchHHHHHHhhccCCh---------------
Q 009184 209 QLNG----QPKLSMLRNATWTLSNFCRGK--------PQPPF----DQVSPALPALAHLIHSNDD--------------- 257 (541)
Q Consensus 209 ~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~----~~~~~~l~~L~~lL~~~d~--------------- 257 (541)
.... ..+..+...+++.+..+++.. ..... .....+++.++..+..++.
T Consensus 356 ~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~ 435 (971)
T 2x1g_F 356 CTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFR 435 (971)
T ss_dssp HHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHH
T ss_pred HHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHH
Confidence 4422 347888999999998887621 11111 1223445555554432211
Q ss_pred hHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCC-----CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHH
Q 009184 258 EVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331 (541)
Q Consensus 258 ~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~ 331 (541)
..+..+..++..++..-. ..... +++.+...+.. .+|..++.++.+++.++.+........+. .+++.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~ 509 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRV 509 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHH
Confidence 234555556655554322 22221 22333333332 67889999999999998876543211111 13332
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHhcC---ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184 332 LLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 408 (541)
Q Consensus 332 L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 408 (541)
+..+..++.++.+|..++|+++.++.- .+.... .+++.|+..+ + +.++..|++++.++
T Consensus 510 l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~----------------~vl~~l~~~l-~--~~v~~~A~~al~~l 570 (971)
T 2x1g_F 510 LAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP----------------PAINLLVRGL-N--SSMSAQATLGLKEL 570 (971)
T ss_dssp HHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH----------------HHHHHHHHHH-H--SSCHHHHHHHHHHH
T ss_pred HHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH----------------HHHHHHHHHh-C--hHHHHHHHHHHHHH
Confidence 222221212789999999999999861 122222 3566777777 2 78999999999999
Q ss_pred ccCCCHHHHHHHHHcCChHHHhhhcCC--CChHHHHHHHHHHHHHHHh
Q 009184 409 TSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 409 ~~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~~l~~L~~l~~~ 454 (541)
+.........++ ..++..|..++.. -+.+....+++++..++..
T Consensus 571 ~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 571 CRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 975433322222 2466677777776 3567888888998888764
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.31 E-value=4.1e-05 Score=71.58 Aligned_cols=205 Identities=17% Similarity=0.102 Sum_probs=144.8
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh
Q 009184 246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE 325 (541)
Q Consensus 246 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~ 325 (541)
..++.-|.+.+.+.+..++..|..+...+.+....++..+++..|+......+..++..++++++++..+.+.....+-.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 44666677788888999999999865566667888999999999999999999999999999999999865544333335
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh---cCchhHHHHHH
Q 009184 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE---NAEFDIKKEAA 402 (541)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~ 402 (541)
..++..+..++.+. ...|.+.|..+|-.++..++.... ++....-.+-.--....+..|+.+|. +.+.+++..|.
T Consensus 201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~-lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAP-LFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccch-HHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 67889999999976 899999999999999875543332 00000000000001124778999997 67899999999
Q ss_pred HHHHHhccCCC-HH----HHHHHHHcCChHHHhhhcCCC--ChHHHHHHHHHHHHHHH
Q 009184 403 WAISNATSGGT-HE----QIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK 453 (541)
Q Consensus 403 ~aL~nl~~~~~-~~----~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l~~L~~l~~ 453 (541)
..|..+..... .+ ....+-+.|+-..+...++.. ++++..+ +.+....++
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q-l~iyE~~~~ 335 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ-LVLYENALK 335 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH-HHHHHHHhh
Confidence 88888876543 23 233344556666677777765 6676665 355555443
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.31 E-value=6.2e-05 Score=81.69 Aligned_cols=302 Identities=13% Similarity=0.137 Sum_probs=207.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC---hh
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---SE 150 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~---~~ 150 (541)
.+..+++.+...+...+..++..+..++....... .+..+++..|.+.+.+.. .. +.|+.++..|+... +.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCC
Confidence 44556666665555566778888888776431111 111257888888887765 23 88999999998532 12
Q ss_pred HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (541)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 230 (541)
.-..++ +.+|.++..+.+....++..|..++..++..-+...- ...++.|+..|........+..++.++..|+
T Consensus 89 ~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 89 VEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp THHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 222233 5789999998888899999998888888744332211 2358889888855557889999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (541)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 309 (541)
...+..-......++|.+...+....++|...+..++..+|.. ....+. ..+|.|++.+.+++. ...++..|
T Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l 235 (986)
T 2iw3_A 163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLL 235 (986)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHH
T ss_pred HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHh
Confidence 7654333334578888888888888999999888888777632 111111 678999999988753 55667777
Q ss_pred hHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
+.-+.-..... ..+ +=.+|.|.+-|... ...+++.++-++.|+|. .++.... .++- .++|.|.
T Consensus 236 ~~~tfv~~v~~-~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~-----------~f~~-~l~p~~~ 300 (986)
T 2iw3_A 236 GATTFVAEVTP-ATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIA-----------PFLG-KLLPGLK 300 (986)
T ss_dssp TTCCCCSCCCH-HHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHH-----------HHHT-TTHHHHH
T ss_pred hcCeeEeeecc-hhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHh-----------hhhh-hhhhHHH
Confidence 66544332211 111 12467777888777 78899999999999998 5666665 4443 6777777
Q ss_pred HHhhc-CchhHHHHHHHHHHHhc
Q 009184 388 ALLEN-AEFDIKKEAAWAISNAT 409 (541)
Q Consensus 388 ~~l~~-~~~~v~~~a~~aL~nl~ 409 (541)
..... .+|++|..|..|+..+.
T Consensus 301 ~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 301 SNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHHHHHH
Confidence 76665 58999988888887773
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.26 E-value=0.00071 Score=75.37 Aligned_cols=343 Identities=10% Similarity=0.048 Sum_probs=195.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC------hh
Q 009184 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------SE 150 (541)
Q Consensus 77 ~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~------~~ 150 (541)
.++..+.+++..++...+.++..++..+ -| .++ .++++.|++++++++ +..+..++.+|..++... ++
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d-~p-~~W---p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~ 162 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSD-FP-DRW---PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE 162 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHH-ST-TTC---TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhh-Cc-cch---hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 4566666666888999999999988753 12 111 457999999998877 788899999999998732 12
Q ss_pred HHHH---HHhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhh
Q 009184 151 HTKV---VIDHGAVPIFVK-------LLYSPSD---------DVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQL 210 (541)
Q Consensus 151 ~~~~---i~~~g~i~~L~~-------lL~~~~~---------~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~i~~Ll~~l 210 (541)
.+.. ++. ...+.+++ .+..+.. ++...++.+++++.. +.+..-...+ ...++.+...+
T Consensus 163 ~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l 240 (960)
T 1wa5_C 163 LFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYL 240 (960)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHH
Confidence 2221 121 12333333 2444221 233346666666653 2232111111 11234445555
Q ss_pred cCC-----Ch---------hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-----cCChhHHHHHHHHHHHhc
Q 009184 211 NGQ-----PK---------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-----SNDDEVLTDACWALSYLS 271 (541)
Q Consensus 211 ~~~-----~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~l~ 271 (541)
... .+ ..++..++.++..+....+..-......+++....++. ..++.+...++..+..++
T Consensus 241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence 321 11 24567777788777654321111223455555566654 335678888888888776
Q ss_pred cCChHHHHHHHH-hCcHHH-----HHHhhC-----------------------CCChhhHHHHHHHHhHhhcCCchhHHH
Q 009184 272 DGTNDKIQAVIE-AGVFPR-----LAEFLM-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQC 322 (541)
Q Consensus 272 ~~~~~~~~~~~~-~g~l~~-----L~~lL~-----------------------~~~~~v~~~al~~L~nl~~~~~~~~~~ 322 (541)
..... .. +.. .+.++. ++..|. +.....|..|..+|..++......
T Consensus 321 ~~~~~-~~-~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~--- 395 (960)
T 1wa5_C 321 RIPKY-FE-IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL--- 395 (960)
T ss_dssp TSHHH-HG-GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---
T ss_pred CcHhH-HH-HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---
Confidence 53221 11 110 112222 222321 111256777888888887654422
Q ss_pred HHhcCchHHHHHhhc------CCCchhHHHHHHHHHHHHhcCC--hH----------HHHHHHhhchhhHHHHHhcCcHH
Q 009184 323 VIEYQALPCLLNLLS------GNYKKSIKKEACWTVSNITAGN--RE----------QIQVIMHVHAFSIIAVIEANIIG 384 (541)
Q Consensus 323 ~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~~~~~~~~~~~~l~~~~~l~ 384 (541)
++ ..+++.+...+. +. +...|..|+.+++.++.+. .. ... .++...++|
T Consensus 396 v~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~-----------~~l~~~v~p 462 (960)
T 1wa5_C 396 VT-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV-----------DFFTKEIAP 462 (960)
T ss_dssp HH-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH-----------HHHHHHTHH
T ss_pred HH-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHH-----------HHHHHHhHH
Confidence 11 123445555555 34 6678899999999998531 11 122 222222333
Q ss_pred HHHHHhhcC---chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 385 PLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 385 ~L~~~l~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
.+.++ ++.+|..|+|+++.++..-.++... .+++.++..|.++++.++..++.+|.+++..
T Consensus 463 ----~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 463 ----DLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp ----HHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred ----HhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 34555 8899999999999998764443322 3577888888888888999999999999874
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.26 E-value=0.00014 Score=81.14 Aligned_cols=344 Identities=13% Similarity=0.092 Sum_probs=187.2
Q ss_pred cCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 009184 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (541)
Q Consensus 126 ~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~ 202 (541)
.+.+ +..++.++++++.++.+..+.. ...++.++..+ ..+++.++..++|+++.++..-.... ..+. .+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HH
Confidence 4444 8999999999999998643211 12233344333 33578899999999999874322111 2222 47
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 009184 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ 279 (541)
Q Consensus 203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~-~~~~ 279 (541)
++.++..| .+ +.++..|++++.++|+.....-......+++.+..++... +.+.+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888888 33 7899999999999997543222233455666666777653 56788888889988875432 3333
Q ss_pred HHHHhCcHHHHHHhh----CCC-ChhhHH---HHHHHHhHhhcCCch---------------------hHHHHHhcCchH
Q 009184 280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCVIEYQALP 330 (541)
Q Consensus 280 ~~~~~g~l~~L~~lL----~~~-~~~v~~---~al~~L~nl~~~~~~---------------------~~~~~~~~~~l~ 330 (541)
..++ .+++.+...+ ..+ ++..+. ..+.+|+.+...-.. ..-..+...+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 2332 3444444433 222 333333 444555444432110 001112234556
Q ss_pred HHHHhhcCC-CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHh
Q 009184 331 CLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNA 408 (541)
Q Consensus 331 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl 408 (541)
.+..++... .+..+...++.++..++..-.+... .++. .+++.++..+... .+ ..++.+..+
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----------~~l~-~~~~~l~~~~~~~~~~----~~l~l~~~l 750 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----------PMVP-QLCEMLGRMYSTIPQA----SALDLTRQL 750 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----------GGHH-HHHHHHHHHHHHSCCH----HHHHHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----------ccHH-HHHHHHHHHHHcCCcc----HHHHHHHHH
Confidence 666665421 1568889999999988652221111 1100 1222233322221 22 233444444
Q ss_pred cc--CCCH---HHHHHHHHcCChHHHhhhcC---CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHH
Q 009184 409 TS--GGTH---EQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE 480 (541)
Q Consensus 409 ~~--~~~~---~~~~~l~~~~~i~~L~~lL~---~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 480 (541)
+. +... .....+.+ .++..+..++. ..+++++......+..++......-.. ....... .++
T Consensus 751 i~~f~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~----~~~~~~~-----i~~ 820 (963)
T 2x19_B 751 VHIFAHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC----ERLDVKA-----VFQ 820 (963)
T ss_dssp HHHHTTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC----TTSCHHH-----HHH
T ss_pred HHHhCCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC----CcccHHH-----HHH
Confidence 33 2211 11211111 12333333332 246899999999999999876543210 0100111 233
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184 481 KIESLQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 481 ~l~~L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
.+.....+++.++...+.+.+.+++..
T Consensus 821 ~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 821 CAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 344445689999999999999887753
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.17 E-value=0.00013 Score=81.59 Aligned_cols=304 Identities=13% Similarity=0.120 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~ 209 (541)
+..++.|+++++.++.+..+.....+. .+++.+..+.. ++++.++..++|+++.++..-....+.+ . .+++.++..
T Consensus 478 w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl~~l~~~ 554 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-P-PAINLLVRG 554 (971)
T ss_dssp CHHHHHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHHHHHHHH
Confidence 789999999999998865432211111 12332222322 3489999999999999874211111111 1 145556666
Q ss_pred hcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCC-hHHHHHHHHh--
Q 009184 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGT-NDKIQAVIEA-- 284 (541)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~-- 284 (541)
| . +.++..|++++.++|+.....-......++..+..++.. .+.+.+..++.+++.++... .+.....+..
T Consensus 555 l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll 630 (971)
T 2x1g_F 555 L-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV 630 (971)
T ss_dssp H-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred h-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6 2 678999999999999753211122335556666677766 35678888888888886532 1222222221
Q ss_pred -CcHHHHHHhhCCC--ChhhHHH---HHHHHhHhhcCCc-------------hhHHHHHhcCchHHHHHhhcCC-CchhH
Q 009184 285 -GVFPRLAEFLMHP--SPSVLIP---ALRTVGNIVTGDD-------------MQTQCVIEYQALPCLLNLLSGN-YKKSI 344 (541)
Q Consensus 285 -g~l~~L~~lL~~~--~~~v~~~---al~~L~nl~~~~~-------------~~~~~~~~~~~l~~L~~lL~~~-~~~~v 344 (541)
.++..+..++... +...+.. ++..|+.+...-. ... ..+-..+++.+..++... .+..+
T Consensus 631 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~v 709 (971)
T 2x1g_F 631 SPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVMQRTMPIFKRIAEMWVEEIDV 709 (971)
T ss_dssp HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CC-HHHHHTTHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCch-HHHHHHHHHHHHHHHHhccccHHH
Confidence 2333333444433 3322333 3333443332111 011 112346788887777532 26689
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC--CCHH---HHHH
Q 009184 345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG--GTHE---QIKF 419 (541)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~--~~~~---~~~~ 419 (541)
...++++++.++..-..... .++. .+++.|+..+..... ..+++.++.++.. .++. ....
T Consensus 710 ~e~~~~~~~~~~~~~~~~~~-----------p~l~-~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~ 774 (971)
T 2x1g_F 710 LEAACSAMKHAITNLRSSFQ-----------PMLQ-DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQ 774 (971)
T ss_dssp HHHHHHHHHHHHHHHHC--C-----------THHH-HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcc-----------ccHH-HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 99999999998763111122 1111 233444444433221 3366777776642 2211 1222
Q ss_pred HHHcCChHHHhhhcCC-------CChHHHHHHHHHHHHHHHhhHhh
Q 009184 420 LVIQGCIKPLCDLLVC-------PDPRIVTVCLEGLENILKVGEAE 458 (541)
Q Consensus 420 l~~~~~i~~L~~lL~~-------~~~~~~~~~l~~L~~l~~~~~~~ 458 (541)
+.. .++..+..++.. .+++++......+..++...+..
T Consensus 775 ~~~-~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~ 819 (971)
T 2x1g_F 775 LLR-EFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV 819 (971)
T ss_dssp HHH-HHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHH-HHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence 221 223333444433 36788888888888888776653
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.15 E-value=0.0011 Score=74.62 Aligned_cols=339 Identities=11% Similarity=0.090 Sum_probs=182.5
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHH-hhcCCCcHHHHHHHHHHHHHHhcCC--hh---HHHHHHh-
Q 009184 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID- 157 (541)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~-lL~~~~~~~i~~~a~~~L~~l~~~~--~~---~~~~i~~- 157 (541)
+++.++..++.++...++- -+...+.+..+++.+.+ ++. + ++++..|+.||..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 4567788888888877652 23444566777887773 443 4 899999999999998742 21 1111111
Q ss_pred -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHhcCChHHHHHhhcCCCh
Q 009184 158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (541)
Q Consensus 158 -~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~r~~i~~~g~i~~Ll~~l~~~~~ 215 (541)
.+.+..+.. ++ ...+.+.....+..+..+.. ..+..+..+ ..+++.++... ..++
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 112222211 11 12344444455555544321 111122221 12455555555 4557
Q ss_pred hhHHHHHHHHHHhhhc----CCCCCC--hhhhhchHHHHHHhhccCC-------------------h---hHHHHHHHHH
Q 009184 216 LSMLRNATWTLSNFCR----GKPQPP--FDQVSPALPALAHLIHSND-------------------D---EVLTDACWAL 267 (541)
Q Consensus 216 ~~~~~~a~~~L~~l~~----~~~~~~--~~~~~~~l~~L~~lL~~~d-------------------~---~v~~~a~~~L 267 (541)
.++...++..+..+++ ...... ......+++.++..+..++ . .....+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 7888888888888877 321111 1233445555555443211 0 1122344455
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC----Cc
Q 009184 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YK 341 (541)
Q Consensus 268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~ 341 (541)
..++...... ++ .-+.+.+-..+. ..+|..+..+++++|.++.+.......-.-..+++.|..+.... .+
T Consensus 438 ~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~ 513 (1049)
T 3m1i_C 438 VYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK 513 (1049)
T ss_dssp HHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred HHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence 5554222211 11 112344444454 36788999999999999865443321111123555555544321 14
Q ss_pred hhHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHH-
Q 009184 342 KSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI- 417 (541)
Q Consensus 342 ~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~- 417 (541)
+.++..++|+++.++. ..+.... .+++.++..+.++++.|+..|++++.+++..+.....
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~l~----------------~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~ 577 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNFLR----------------TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI 577 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHH----------------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH----------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666679999998875 1222222 4677788888888899999999999999874332211
Q ss_pred -------HHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 418 -------KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 418 -------~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
.++ ..++..+..++..-+.+-...+.+++..++..
T Consensus 578 ~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 578 QQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp CCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 111 12333444444444444455566676666643
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.15 E-value=0.00039 Score=75.51 Aligned_cols=300 Identities=17% Similarity=0.162 Sum_probs=203.2
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhHHHH
Q 009184 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS---PRCRDLV 197 (541)
Q Consensus 121 Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~---~~~r~~i 197 (541)
+++-++..+ ..-+..++..+.++..+..... .+..+++..|.+.+.+.... +.|+.++..||... +..-..+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 444455544 3445667777777766431110 11125667777777764333 99999999999433 2232333
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChH
Q 009184 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTND 276 (541)
Q Consensus 198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~ 276 (541)
+ +.++.++..+ .+....++..|..++..+...-+. .....++|.|+..|.+. .......++.++..++...++
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 3 3678888887 666778888888888888765422 23478899999988765 688999999999999976555
Q ss_pred HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (541)
Q Consensus 277 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (541)
.... .-..++|.+...+.+..+++...|..++..+|..-+ ... ...+|.|++.+.++ +. ..++...|+.-
T Consensus 168 ~~~~-~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p-~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 168 QVAL-RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADP-TE--VPETVHLLGAT 238 (986)
T ss_dssp HHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCT-TH--HHHHHHHHTTC
T ss_pred HHHH-hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcCh-hh--hHHHHHHhhcC
Confidence 4332 223789999999999999999999999988886322 111 35788999999877 33 34555555544
Q ss_pred hc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC-CHHHHHHHHHcCChHHHhh
Q 009184 356 TA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG-THEQIKFLVIQGCIKPLCD 431 (541)
Q Consensus 356 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~ 431 (541)
+. -...... =++|.|.+-|......+++.++-.+.|++.-- ++.....++ -.+++.+..
T Consensus 239 tfv~~v~~~~l~----------------~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~ 301 (986)
T 2iw3_A 239 TFVAEVTPATLS----------------IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKS 301 (986)
T ss_dssp CCCSCCCHHHHH----------------HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHH
T ss_pred eeEeeecchhHH----------------HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHH
Confidence 43 1222222 25788888888888899999999999998533 454444432 345666666
Q ss_pred hcC-CCChHHHHHHHHHHHHHHHhhHh
Q 009184 432 LLV-CPDPRIVTVCLEGLENILKVGEA 457 (541)
Q Consensus 432 lL~-~~~~~~~~~~l~~L~~l~~~~~~ 457 (541)
..+ ..+|+++..+-.++..|.+.+..
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 554 47899999999999888776543
No 92
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.14 E-value=9.5e-05 Score=82.45 Aligned_cols=258 Identities=10% Similarity=0.094 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhhHHHHH---hc-C
Q 009184 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCRDLVL---SQ-G 201 (541)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~r~~i~---~~-g 201 (541)
..+..|..+|..++....+ .++. .+++.+.+.+. +++...++.|+.+++.++.....+..... .. .
T Consensus 376 s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 4677778888888764332 1211 12344444454 46778999999999999843211100000 00 1
Q ss_pred Ch----HHHHHhhcCC--ChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC-
Q 009184 202 GL----VPLLAQLNGQ--PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT- 274 (541)
Q Consensus 202 ~i----~~Ll~~l~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~- 274 (541)
.. ..++..+... .++-++..++|+++.++..- .......+++.++..|.+++..|+..|+++|.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 11 1223334222 27889999999999999864 23456788899999988888999999999999988631
Q ss_pred ----------hHHHHHHHHhCcHHHHHHhhCCCC-----hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh---
Q 009184 275 ----------NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL--- 336 (541)
Q Consensus 275 ----------~~~~~~~~~~g~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL--- 336 (541)
.+.....+ ..+++.|..++.... ......++.+|+.++....+...... ..+++.|...+
T Consensus 529 ~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH
Confidence 11111111 145666667775531 11334666666666542222111111 12333333333
Q ss_pred -cCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 337 -SGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 337 -~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
+++.++..+..++.+++.++.. .++... -+...++|.+..++.....+....+...+..++.
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~------------~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLP------------LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHH------------HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHH------------HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 3443667777888899988875 444333 3344678888888887666777777777777654
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.12 E-value=2.8e-05 Score=86.15 Aligned_cols=303 Identities=11% Similarity=0.023 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC--hhHHHHHHhCCCh
Q 009184 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAV 161 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~g~i 161 (541)
+.++.+...++.++...++ .-++..+++.++++.+.++|.. ++++..|+.||..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 4678888999999999875 4567777788899999999874 799999999999998754 3333333321011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCh-----hhHHHH--HhcCChHHHHHhhcCCChhhHHHHHHHHH
Q 009184 162 PIFVKLLY--SPSDDVREQAVWALGNIAG------DSP-----RCRDLV--LSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (541)
Q Consensus 162 ~~L~~lL~--~~~~~v~~~a~~~L~nl~~------~~~-----~~r~~i--~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L 226 (541)
...+..+. ..+.++.+..+..+..++. ..+ +.+... .-.+.++.++..+ ..++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 22222222 4667766655555443321 111 111110 1124677788888 556667777777666
Q ss_pred HhhhcCC---CC--CCh----hhhhchHHHHHHhhccCC-----h-----------hHHHHHHHHHHHhc-cCChHHHHH
Q 009184 227 SNFCRGK---PQ--PPF----DQVSPALPALAHLIHSND-----D-----------EVLTDACWALSYLS-DGTNDKIQA 280 (541)
Q Consensus 227 ~~l~~~~---~~--~~~----~~~~~~l~~L~~lL~~~d-----~-----------~v~~~a~~~L~~l~-~~~~~~~~~ 280 (541)
..+.... +. ... .....+++.++.-+..++ . +.|.... .+...+ .-.++..-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 6655321 11 111 223444555554444221 1 2333333 332222 112211111
Q ss_pred -HHHhCcHHHHHHhhC---CCChhhHHHHHHHHhHhhcCCchhHHHH-----HhcCchHHHHHhhc-----CCCchhHHH
Q 009184 281 -VIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKK 346 (541)
Q Consensus 281 -~~~~g~l~~L~~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~~-----~~~~~l~~L~~lL~-----~~~~~~v~~ 346 (541)
+.+ -+.+.+...+. +.+|..++.++.+|+.++.+.......+ .-..+++.+..++. .. ++.|+.
T Consensus 436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 110 11122223332 3468899999999999988754321111 00124556666655 45 899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh------hcCchhHHHHHHHHHHHhccCCC
Q 009184 347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL------ENAEFDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l------~~~~~~v~~~a~~aL~nl~~~~~ 413 (541)
.++|+++..+.--..+ ...++.++..+ .+++.+++..|+.++.+++..+.
T Consensus 514 ~~~~~l~rys~~~~~~-----------------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 514 LYMEILVRYASFFDYE-----------------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHTGGGGGTC-----------------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC-----------------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 9999999987621111 12344444443 34567899999999999987543
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.08 E-value=0.0021 Score=71.73 Aligned_cols=348 Identities=13% Similarity=0.079 Sum_probs=183.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc----HHHHHh--cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~i~--~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~ 148 (541)
++.+++.+ .+++.+..|+.++..+++....+. ...++. .+..+.+...+...+ .+.....+..+..++...
T Consensus 243 l~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~ 319 (963)
T 2x19_B 243 IQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENH 319 (963)
T ss_dssp HHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHh
Confidence 34444444 357788899999999987532221 111111 112233333334444 555556666666665421
Q ss_pred hhHH-------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------hhhHHHHHh--cCChHHH
Q 009184 149 SEHT-------KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDS--------PRCRDLVLS--QGGLVPL 206 (541)
Q Consensus 149 ~~~~-------~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~--------~~~r~~i~~--~g~i~~L 206 (541)
+... ..+ ..+++.++.+... .++.+...++..+..++.+. +........ ...++.+
T Consensus 320 ~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 397 (963)
T 2x19_B 320 SRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL 397 (963)
T ss_dssp HHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1110 111 1345555655553 34556666766666665411 111111110 0123444
Q ss_pred HHhhcCCChh--------------hHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHHHH
Q 009184 207 LAQLNGQPKL--------------SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----HSNDDEVLTDACWALS 268 (541)
Q Consensus 207 l~~l~~~~~~--------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~ 268 (541)
+..+....+. +.+..+..+|..++...+ ......+++.+...+ .+.+...++.++++++
T Consensus 398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~ 474 (963)
T 2x19_B 398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQ 474 (963)
T ss_dssp HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4444322211 123444555555553211 112233444444555 4567788999999999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhh---CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHH
Q 009184 269 YLSDGTNDKIQAVIEAGVFPRLAEFL---MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345 (541)
Q Consensus 269 ~l~~~~~~~~~~~~~~g~l~~L~~lL---~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 345 (541)
.++.+..... ...++.++..+ ..+++.++..+++++|.++..-.... ..+ ..+++.|+..|.+ +.++
T Consensus 475 ~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V~ 544 (963)
T 2x19_B 475 SIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PELS 544 (963)
T ss_dssp HHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGGH
T ss_pred HHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chHH
Confidence 9987643211 12333444333 33578899999999999986432222 222 3788888888843 7899
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--chhHHHHHHHHHHHhccCCC-HHHHHHHHH
Q 009184 346 KEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGT-HEQIKFLVI 422 (541)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~ 422 (541)
..|++++.+++........ ..+ ..++..|..++..+ +.+.+..+..+++.++.... .....++ +
T Consensus 545 ~~A~~al~~l~~~~~~~l~-----------p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~ 611 (963)
T 2x19_B 545 VSSVSTLKKICRECKYDLP-----------PYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-H 611 (963)
T ss_dssp HHHHHHHHHHHHHTGGGCT-----------TTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHH-----------hhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-H
Confidence 9999999999974333222 111 13555666666653 56889999999999986544 2333332 1
Q ss_pred cCChHHHhhhc----CC-CChHHHH---HHHHHHHHHHHh
Q 009184 423 QGCIKPLCDLL----VC-PDPRIVT---VCLEGLENILKV 454 (541)
Q Consensus 423 ~~~i~~L~~lL----~~-~~~~~~~---~~l~~L~~l~~~ 454 (541)
.++.++...+ +. .+++... ..+++|..+.+.
T Consensus 612 -~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 612 -SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT 650 (963)
T ss_dssp -HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2344444333 22 2444433 445555555543
No 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.99 E-value=0.00029 Score=65.92 Aligned_cols=187 Identities=12% Similarity=0.110 Sum_probs=141.2
Q ss_pred HHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhh
Q 009184 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369 (541)
Q Consensus 290 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 369 (541)
++..|.+.+...+..++.-|..+.......+..++..+++..|+.+.... +.+++..++.++.++... .....
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~----- 195 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGML----- 195 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHH-----
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-ccccc-----
Confidence 44455566777889999999997766778888999999999999999998 999999999999999874 44454
Q ss_pred chhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHH--------Hc--CChHHHhhhcC---C
Q 009184 370 HAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV--------IQ--GCIKPLCDLLV---C 435 (541)
Q Consensus 370 ~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~--~~i~~L~~lL~---~ 435 (541)
.++ ...++..+..++.+.+..|.+.|+..|..++...+... ..+. +. .....|+.+|. +
T Consensus 196 ------gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~-~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~ 268 (339)
T 3dad_A 196 ------GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA-PLFIRAVNSVASTTGAPPWANLVSILEEKNG 268 (339)
T ss_dssp ------HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS
T ss_pred ------chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccc-hHHHHHHHHhhhccCCCcHHHHHHHHhccCC
Confidence 444 55678888888888889999999999999987642111 1111 11 24778999997 6
Q ss_pred CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCC--CHHHHH
Q 009184 436 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYE 495 (541)
Q Consensus 436 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~--~~~i~~ 495 (541)
.|.++...++..|..++...+.... -..+...+++.|.-..+....... ++++.+
T Consensus 269 ~D~elq~~amtLIN~lL~~apd~d~-----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 269 ADPELLVYTVTLINKTLAALPDQDS-----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSHHH-----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCChhH-----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 8899999999999999887653321 223677888888777888865544 666654
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.89 E-value=0.0064 Score=68.35 Aligned_cols=357 Identities=10% Similarity=0.111 Sum_probs=188.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHHcc---CCCC--c------H-HHHHh--cCCHHHHHHhhcCCCcHHHHHHHHH
Q 009184 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSI---ERSP--P------I-EEVIR--SGVVPRFVEFLLREDYPQLQFEAAW 139 (541)
Q Consensus 74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~---~~~~--~------~-~~~i~--~g~i~~Lv~lL~~~~~~~i~~~a~~ 139 (541)
.++.+++.++ .++..+..++..|..+... .+.. . + +.+.. ..+++.+.+++....++.++..++.
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5677777775 4554555555555554421 0010 0 0 11221 1234445556655444789999999
Q ss_pred HHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--hh---hHHHHHh--cCChHHHHH-h-
Q 009184 140 ALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDS--PR---CRDLVLS--QGGLVPLLA-Q- 209 (541)
Q Consensus 140 ~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~--~~---~r~~i~~--~g~i~~Ll~-~- 209 (541)
++.++..--+ ...+.+...++.+.. ++ .+++++..|+.+|..+.... +. ....+.. .+.+..+.. +
T Consensus 218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~ 293 (1049)
T 3m1i_C 218 SLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1049)
T ss_dssp HHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 9988766333 223455667777763 44 37899999999999998542 21 1111111 111221111 1
Q ss_pred ---------h--cCCChhhHHHHHHHHHHhhhcCC------CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 210 ---------L--NGQPKLSMLRNATWTLSNFCRGK------PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 210 ---------l--~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
+ ....+.+.....+..+..+.... +.........+++.++.....++.++...++..+..++.
T Consensus 294 p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp CTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 1 12234555555555554443210 111112234567777777777788888888766666654
Q ss_pred ----CC--hHHHHHHHHhCcHHHHHHhhCCCCh----------------------hhHHHHHHHHhHhhcCCchhHHHHH
Q 009184 273 ----GT--NDKIQAVIEAGVFPRLAEFLMHPSP----------------------SVLIPALRTVGNIVTGDDMQTQCVI 324 (541)
Q Consensus 273 ----~~--~~~~~~~~~~g~l~~L~~lL~~~~~----------------------~v~~~al~~L~nl~~~~~~~~~~~~ 324 (541)
.. ......++. .+++.++..+..++. ..+..+..+|..++....... +
T Consensus 374 ~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~---l 449 (1049)
T 3m1i_C 374 DLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT---E 449 (1049)
T ss_dssp HHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHH---H
T ss_pred HHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHH---H
Confidence 11 111111111 344555555532210 123344445555543222111 1
Q ss_pred hcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh-----cCchhHH
Q 009184 325 EYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE-----NAEFDIK 398 (541)
Q Consensus 325 ~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~-----~~~~~v~ 398 (541)
.-+.+.+-..+.. ..+...+..++|+++.++.+...... .-.-..+++.|..+.. .+++.++
T Consensus 450 -~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e-----------~~~l~~v~~~l~~l~~~~~~~~~~~~v~ 517 (1049)
T 3m1i_C 450 -EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTE-----------KRFVVTVIKDLLDLTVKKRGKDNKAVVA 517 (1049)
T ss_dssp -HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHH-----------HHHHHHHHHHHHHHTTSSCSHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhh-----------HHHHHHHHHHHHHHHhhhccccchHHHH
Confidence 1123444455543 22667889999999999864322211 1111124444544332 1345566
Q ss_pred HHHHHHHHHhccC--CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184 399 KEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 456 (541)
Q Consensus 399 ~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~ 456 (541)
..++|+++.++.. ..++... .+++.|...+.++++.++..|+.++.++.....
T Consensus 518 ~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 518 SDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6799999987643 1222222 357778888888889999999999999998644
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.85 E-value=0.00077 Score=74.79 Aligned_cols=141 Identities=10% Similarity=0.052 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHHHHHhcCChhH-HHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 009184 130 YPQLQFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203 (541)
Q Consensus 130 ~~~i~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i 203 (541)
++..++.++|+++.|+.+-.+. -..++ ..+++.|+.++.. +...++..++|++|.++..-....+. +. ..+
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~-~vl 542 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LR-TVI 542 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HH-HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HH-HHH
Confidence 4999999999999999865433 22222 2467888887753 33456678889999887422111111 11 134
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC--------CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 204 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
..++..+ ..+++.++..|+|++.++|..... ........++..+...+..-+.+-...+..+++.+....
T Consensus 543 ~~L~~~l-~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 543 LKLFEFM-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHT-TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 4455555 556688999999999999975211 111123444444555554456677778888888887653
No 98
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.72 E-value=0.0074 Score=66.90 Aligned_cols=297 Identities=12% Similarity=0.107 Sum_probs=162.7
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHH-HhhcCCCcHHHHHHHHHHHHHHhcCC-hhHHHHHHh--CC
Q 009184 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVID--HG 159 (541)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv-~lL~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~i~~--~g 159 (541)
+.++.+...++.++..+++ --++..+++.++++.++ .+|. + ++++..|+.||..|.... ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4567777888889888875 44677888899999884 6664 3 899999999999998743 222222211 11
Q ss_pred ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCC-------ChhhHHHHHhcCChHHHHHhhcCCChhhHH
Q 009184 160 AVPIFVKLL-------------YSPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219 (541)
Q Consensus 160 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~-------~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~ 219 (541)
.+..+..++ ...+.+.....+..+..+... .|..+..+.. ++..++.+- ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 122222222 122345555555555554321 1111111111 122333333 55688888
Q ss_pred HHHHHHHHhhhcC----CC-----CC------------ChhhhhchHHHHHH----hhccCCh-----------------
Q 009184 220 RNATWTLSNFCRG----KP-----QP------------PFDQVSPALPALAH----LIHSNDD----------------- 257 (541)
Q Consensus 220 ~~a~~~L~~l~~~----~~-----~~------------~~~~~~~~l~~L~~----lL~~~d~----------------- 257 (541)
..+......|... .+ .+ ......+++..|.. -+..+++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 8887776665432 11 00 01112333333333 2222210
Q ss_pred --------hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCCchhHHHHHhcC
Q 009184 258 --------EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327 (541)
Q Consensus 258 --------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~ 327 (541)
+...+++..+.++. ..+... -.++.+.+.+.. .+|.....+|+++|.++..-....+.-.=..
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~--~~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~ 521 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLD--YVDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT 521 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC--HHHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHhcCC--HHHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence 12222332222222 111111 123444444443 4688999999999999854433222122235
Q ss_pred chHHHHHhhcCCC----chhHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184 328 ALPCLLNLLSGNY----KKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE 400 (541)
Q Consensus 328 ~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 400 (541)
+++.|+.+..+.. ...++...+|++|..+. ..++... .++..|++.+...++.|+..
T Consensus 522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~----------------~vl~~L~~~m~~~~~~vq~a 585 (1073)
T 3gjx_A 522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK----------------TVVNKLFEFMHETHDGVQDM 585 (1073)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH----------------HHHHHHHHHTTCCSTTHHHH
T ss_pred HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH----------------HHHHHHHHHHhcCCHHHHHH
Confidence 6777777775442 23455667799998765 2333333 46677888888888999999
Q ss_pred HHHHHHHhccCC
Q 009184 401 AAWAISNATSGG 412 (541)
Q Consensus 401 a~~aL~nl~~~~ 412 (541)
|+.++..++..+
T Consensus 586 A~~af~~i~~~C 597 (1073)
T 3gjx_A 586 ACDTFIKIAQKC 597 (1073)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.54 E-value=0.0068 Score=67.12 Aligned_cols=340 Identities=12% Similarity=0.063 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHH-hCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVI-DHG----AVPIFVKLLY-----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~-~~g----~i~~L~~lL~-----~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~ 200 (541)
+...+.|+.+|+.++.+-......+. ... +++.+..++. .+++.++..++|+++..+..-.. ..
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~ 530 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES 530 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 78899999999999886433211110 012 2344445544 57899999999999998754321 22
Q ss_pred CChHHHHHhhcC-----CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc-----CCh-------------
Q 009184 201 GGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-----NDD------------- 257 (541)
Q Consensus 201 g~i~~Ll~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-----~d~------------- 257 (541)
..+++++..+.. +++..++..|+.++.++|+.....-......++..+..+|.. .+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 356666666544 456789999999999999875332223334455555555542 111
Q ss_pred ---hHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHH----HHHhhCCC----Chh-hHHHHHHHHhHhhcCCchh---
Q 009184 258 ---EVLTDACWALSYLS---DGTNDKIQAVIEAGVFPR----LAEFLMHP----SPS-VLIPALRTVGNIVTGDDMQ--- 319 (541)
Q Consensus 258 ---~v~~~a~~~L~~l~---~~~~~~~~~~~~~g~l~~----L~~lL~~~----~~~-v~~~al~~L~nl~~~~~~~--- 319 (541)
+-+.....+++.+. ..+.+.....++ .+++. +-..+... +.. -....+.+++.++.+-...
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~ 689 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE 689 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence 12333445555554 223333332332 23333 33344322 111 2234577778888654321
Q ss_pred ---HHHHHhcCchHHHHHhhc--CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-
Q 009184 320 ---TQCVIEYQALPCLLNLLS--GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA- 393 (541)
Q Consensus 320 ---~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~- 393 (541)
...++ ..+.+.++..|. .. +..++..++.++..+...-...+. ..+|.++..+-..
T Consensus 690 ~~p~~~~f-~~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~----------------p~lp~~i~~ll~~~ 751 (980)
T 3ibv_A 690 EVAWLASF-NKASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDML----------------PKVPQLISILLNSI 751 (980)
T ss_dssp CCSHHHHH-HHHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHT----------------TTHHHHHHHHHHHC
T ss_pred CCcHHHHH-HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHH----------------HHHHHHHHHHHhcC
Confidence 11111 234555655565 34 788999999999999885444443 4677777765432
Q ss_pred chhHHHHHHHHHHHhccCCCHHHHHHHHH--cCChHHHhhhcCCCC---------hHHHHHHHHHHHHHHHhhHhhhhcC
Q 009184 394 EFDIKKEAAWAISNATSGGTHEQIKFLVI--QGCIKPLCDLLVCPD---------PRIVTVCLEGLENILKVGEAEKNLG 462 (541)
Q Consensus 394 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~--~~~i~~L~~lL~~~~---------~~~~~~~l~~L~~l~~~~~~~~~~~ 462 (541)
+..--...+|.++.++..-..+....|-+ .-++..+..+|..++ ..+.+.-+..+..++..+-.
T Consensus 752 ~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~----- 826 (980)
T 3ibv_A 752 DMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG----- 826 (980)
T ss_dssp CTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch-----
Confidence 44445566777777764221122222111 124455555665432 12444444455555542211
Q ss_pred CCCcchhhhHhhhc--c----hHHHHHHH-hcCCCHHHHHHHHHHHHHhCCC
Q 009184 463 NTDVNVFTQMIDDA--E----GLEKIESL-QTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 463 ~~~~~~~~~~i~~~--~----~~~~l~~L-~~~~~~~i~~~a~~il~~~~~~ 507 (541)
..++.+. + .+..|... ...+++...+.|..++.++...
T Consensus 827 -------~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 827 -------SILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp -------GGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred -------hhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 0111111 1 13333333 2457888889999998887654
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.002 Score=60.35 Aligned_cols=192 Identities=11% Similarity=0.092 Sum_probs=125.6
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcH-HHHH--hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (541)
Q Consensus 72 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~i--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~ 148 (541)
+..+| +-+.|.|.++..|..|+..+.+++........ +... -....+.+-..+.+.+ ..++..++.++..++...
T Consensus 9 ~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 9 YTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp --CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC
T ss_pred hhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHh
Confidence 44566 66889999999999999999998865321111 1111 1234566677887777 999999999999887532
Q ss_pred h-----hHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q 009184 149 S-----EHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (541)
Q Consensus 149 ~-----~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a 222 (541)
. .......-..++|.|+. .+.+....+++.+..++..++...... .. +++.++..+ .+.++.++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~ 159 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAA 159 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHH
Confidence 1 11111112345777775 578888999999988887776332211 11 234455555 67889998888
Q ss_pred HHHHHhhhcCC--CCCC-hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 223 TWTLSNFCRGK--PQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 223 ~~~L~~l~~~~--~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
+..|..+.... .... ......+++.+..++.+.|+.|+..|..++..+-.
T Consensus 160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88888776542 1111 22334566778888999999999999998877653
No 101
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.45 E-value=0.034 Score=51.66 Aligned_cols=299 Identities=18% Similarity=0.182 Sum_probs=180.8
Q ss_pred HHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHH
Q 009184 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLT 261 (541)
Q Consensus 183 L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~ 261 (541)
|.|+..++...-+-++..+++..+...+ ..++.++.+..+..|...+.... .........+|.++..+. ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaks-L~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKA-LAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGG-GGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHH-HhhccccccchHHHHHhccCCCcceEE
Confidence 3344445544556666777788888887 77888999999999988876542 122234678898888876 67899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CC------Chh-------hHHHHHHHHhHhhc-------------
Q 009184 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HP------SPS-------VLIPALRTVGNIVT------------- 314 (541)
Q Consensus 262 ~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~------~~~-------v~~~al~~L~nl~~------------- 314 (541)
.....|++...+.....+..+..|.+..|...+. .+ +.. +...+++++.|+..
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 9999999999888877777788899999988762 22 222 34445555555532
Q ss_pred CC--chhHHHHHhcCchHHHHHhhcCCC-----chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184 315 GD--DMQTQCVIEYQALPCLLNLLSGNY-----KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV 387 (541)
Q Consensus 315 ~~--~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 387 (541)
|. ..+...+++..++..|+..|+-.. --++|.......--+.+...--.+.++-. .. .+-..+.+-.++
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~V---tD-d~rk~NLvGHIc 499 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNV---ID-ENRKENLIGHIC 499 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGC---CC-TTTCCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccc---cc-hhhhhhhHHHHH
Confidence 11 123344567788888998887542 13566666555554444211100000000 00 111234444444
Q ss_pred HHhhc-----Cc-------hhHHHHHHHHHHHhccCC-CHHHHHHHHHcC--ChHHHhhhcCCC--ChHHHHHHHHHHHH
Q 009184 388 ALLEN-----AE-------FDIKKEAAWAISNATSGG-THEQIKFLVIQG--CIKPLCDLLVCP--DPRIVTVCLEGLEN 450 (541)
Q Consensus 388 ~~l~~-----~~-------~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~--~i~~L~~lL~~~--~~~~~~~~l~~L~~ 450 (541)
-.+.. .+ ..+.+.+...|..+.... ...+ +..+ .+..=..+|+++ .|..+..++..-.+
T Consensus 500 iA~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~q----VAh~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDK 575 (619)
T 3c2g_A 500 AAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKE----VAQYSYSIDCPLNLLNGNQVKPTFIHNVLVVCDK 575 (619)
T ss_dssp HHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHH----HHHTTTTSCCGGGGGSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHH----HHhheeeccCchhhhcccccChHHHHHHHHHHHH
Confidence 44432 11 223344555555555432 3322 1222 244445667664 46777788888888
Q ss_pred HHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184 451 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 504 (541)
Q Consensus 451 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~ 504 (541)
+++.++..... + .-.-..++.+.+|.|++|...|..++.+|
T Consensus 576 ILeHcP~~Ad~-------W------~i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 576 ILEHCPTRADI-------W------TIDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp HHHHCTTHHHH-------S------CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred HHHhCcchhcc-------c------eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 88776553211 0 11134678899999999999999999776
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.43 E-value=0.00034 Score=69.24 Aligned_cols=220 Identities=17% Similarity=0.110 Sum_probs=143.4
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHH-HHHhcCCHHHHHHhhc---------CCCcHHHHHHHHHH
Q 009184 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE-EVIRSGVVPRFVEFLL---------REDYPQLQFEAAWA 140 (541)
Q Consensus 71 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~-~~i~~g~i~~Lv~lL~---------~~~~~~i~~~a~~~ 140 (541)
.++....++..|.++.+++|.-|+-.||.++......... ...+..+.-.|+-.+. +.--..+|+.|+.+
T Consensus 172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQt 251 (800)
T 3oc3_A 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYL 251 (800)
T ss_dssp GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHH
Confidence 3446788888999999999999999999998754210000 0001123333333332 11125799999999
Q ss_pred HHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q 009184 141 LTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220 (541)
Q Consensus 141 L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~ 220 (541)
|+.+ ..-+.. ..++..++..+..+..+++..++..|..+ .+.... + .++++.++..| .+.+.+++.
T Consensus 252 LGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-L-d~Vv~aVL~GL-~D~DDDVRA 317 (800)
T 3oc3_A 252 LSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-K-DGLCRKLVSLL-SSPDEDIKL 317 (800)
T ss_dssp HHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-H-HHHHHHHHHHT-TCSSHHHHH
T ss_pred HHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-H-HHHHHHHHhhc-CCcccHHHH
Confidence 9999 543333 34455565666778899999999999887 111111 1 23577777888 777899999
Q ss_pred HHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC
Q 009184 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298 (541)
Q Consensus 221 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~ 298 (541)
.|+.+|..++ . ......++..+...|.+-|+ .-....+..|+.|+..+.. ...+...+|+|.+++.++-
T Consensus 318 VAAetLiPIA--~----p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtI 388 (800)
T 3oc3_A 318 LSAELLCHFP--I----TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPV 388 (800)
T ss_dssp HHHHHHTTSC--C----SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSS
T ss_pred HHHHHhhhhc--c----hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCc
Confidence 9999999988 1 13345666677776664321 1223333444444433221 0112378999999999999
Q ss_pred hhhHHHHHHHHhHhh
Q 009184 299 PSVLIPALRTVGNIV 313 (541)
Q Consensus 299 ~~v~~~al~~L~nl~ 313 (541)
.+||..+++++..+.
T Consensus 389 TSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 389 PEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998887
No 103
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.30 E-value=0.053 Score=60.14 Aligned_cols=315 Identities=13% Similarity=0.137 Sum_probs=166.2
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHH
Q 009184 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGDS-PRCRD 195 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~ 195 (541)
++.+..+|..+.++++...++.+|..+.+=- ....+++.+.++.| ..+| ++++++..|+.||..+.+.. +.+.+
T Consensus 208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~ 283 (1073)
T 3gjx_A 208 FQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE 283 (1073)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence 3344445544444888888889999887732 24567788888888 4666 46789999999999998542 22223
Q ss_pred HHHh--cCChHHHHHhh------------cCCChhhHHHHHHHHHHhhhcCCC-----CCC-hhhhhchHHHHHHhhccC
Q 009184 196 LVLS--QGGLVPLLAQL------------NGQPKLSMLRNATWTLSNFCRGKP-----QPP-FDQVSPALPALAHLIHSN 255 (541)
Q Consensus 196 ~i~~--~g~i~~Ll~~l------------~~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~l~~L~~lL~~~ 255 (541)
.+.. .+.+..+-.++ ....+.+.....+.++..+..... .+. ......++..++.+...+
T Consensus 284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~ 363 (1073)
T 3gjx_A 284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE 363 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence 2211 01111111122 123345666777777766554320 001 112233444556666677
Q ss_pred ChhHHHHHHHHHHHhcc----CC------------------hHHHHHHH--HhCcHHHHHHhhCCCCh------------
Q 009184 256 DDEVLTDACWALSYLSD----GT------------------NDKIQAVI--EAGVFPRLAEFLMHPSP------------ 299 (541)
Q Consensus 256 d~~v~~~a~~~L~~l~~----~~------------------~~~~~~~~--~~g~l~~L~~lL~~~~~------------ 299 (541)
|.++...++..-..+.. .. ........ =..+...++.-|..+..
T Consensus 364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~ 443 (1073)
T 3gjx_A 364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVV 443 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHH
Confidence 88877665544333321 10 01111000 01222333333332221
Q ss_pred -----h-----hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC-ChHHHHHHH
Q 009184 300 -----S-----VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG-NREQIQVIM 367 (541)
Q Consensus 300 -----~-----v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~~~ 367 (541)
+ +....-.++..++.-....+..+ .++.|...+..+ .+......+||+++.++.. .++.-..
T Consensus 444 re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~-- 517 (1073)
T 3gjx_A 444 REFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKR-- 517 (1073)
T ss_dssp EEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHH--
T ss_pred HHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccc--
Confidence 0 00111112222221111111111 233444444432 2567889999999999863 2221110
Q ss_pred hhchhhHHHHHhcCcHHHHHHHhhcC-----chhHHHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHhhhcCCCChHH
Q 009184 368 HVHAFSIIAVIEANIIGPLVALLENA-----EFDIKKEAAWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRI 440 (541)
Q Consensus 368 ~~~~~~~~~l~~~~~l~~L~~~l~~~-----~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 440 (541)
.+. .+++.|+.+.... ...++...+|+++.....- .++..+ .++..|.+.+...++.+
T Consensus 518 --------~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~v 582 (1073)
T 3gjx_A 518 --------FLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGV 582 (1073)
T ss_dssp --------HHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTH
T ss_pred --------hHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHH
Confidence 122 3677777776554 2345666778888876531 233322 35777888888889999
Q ss_pred HHHHHHHHHHHHHhhHh
Q 009184 441 VTVCLEGLENILKVGEA 457 (541)
Q Consensus 441 ~~~~l~~L~~l~~~~~~ 457 (541)
+..|+.++..|...+..
T Consensus 583 q~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 583 QDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp HHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876654
No 104
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.19 E-value=0.019 Score=53.66 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=141.8
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR----CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 229 (541)
.+...+.+..|+..|..-+.+.+..+..++.++.+.... ..+.+.. -...+.-++....++++.-.+-..|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 344457788899999888899999999999999865542 2233332 1233333333445666666666667666
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCChhhHHHHH
Q 009184 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL 306 (541)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al 306 (541)
++...........+.+-.+...+..++=++..+|..++..+..........++.. .++...-.+|.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 6654333333334555566777788889999999999988876555444444443 4577788899999999999999
Q ss_pred HHHhHhhcCCch---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 307 RTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 307 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
..||.+...... ....+-+..-+..++.+|.+. +..++.+|..++--+++
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999999875332 223334556788999999999 99999999999887777
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.19 E-value=0.0052 Score=56.22 Aligned_cols=180 Identities=15% Similarity=0.092 Sum_probs=118.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc----hhHHH
Q 009184 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD----MQTQC 322 (541)
Q Consensus 247 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~----~~~~~ 322 (541)
.+...|.+.|..-...++..|........+.....++ .+++.+.-.+.+.+..+...++.+|..+...-. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3455566667776677777666654333322221122 133444334457788888888888877753111 11111
Q ss_pred HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHH
Q 009184 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAA 402 (541)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 402 (541)
- -.-++|.|+.-+-++ ...+|..+-.++..++.-.+.. .+++.+++.+.+.++++|.+++
T Consensus 129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~------------------~v~~~l~~g~ksKN~R~R~e~l 188 (266)
T 2of3_A 129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL------------------KMTPMLLDALKSKNARQRSECL 188 (266)
T ss_dssp H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH------------------HHHHHHHHGGGCSCHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH------------------HHHHHHHHHHccCCHHHHHHHH
Confidence 1 124688999999887 8889988887777665421111 2567788888889999999999
Q ss_pred HHHHHhccC-CCHHHHHHHHHcCCh---HHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 403 WAISNATSG-GTHEQIKFLVIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 403 ~aL~nl~~~-~~~~~~~~l~~~~~i---~~L~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
..+..+... |.+ ....+ +.+..++.+.|..++..|+.++..+...
T Consensus 189 ~~l~~li~~~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 189 LVIEYYITNAGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999998742 221 13468 9999999999999999999999887764
No 106
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0079 Score=56.20 Aligned_cols=186 Identities=14% Similarity=0.100 Sum_probs=125.1
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC-----hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh-----
Q 009184 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-----FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN----- 275 (541)
Q Consensus 206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~----- 275 (541)
+-..| .+.+...+..++..+..+....+... ........+.+.+.+.+.+..+...++.++..++....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 55666 78889999999998888776542211 11234556777788888899999999999988764321
Q ss_pred HHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184 276 DKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (541)
Q Consensus 276 ~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (541)
.......-..+++.|+. .+.+....++..++.++..++....... .+++.+...+.+. ++.++.+++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 11111122356777775 4788888999999988877765332111 1245677778888 99999999999988
Q ss_pred Hhc--CChH-HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184 355 ITA--GNRE-QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 411 (541)
Q Consensus 355 l~~--~~~~-~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 411 (541)
+.. +... ... ..+. .+++.+..++.+.++.||..|..++..+-..
T Consensus 166 ~l~~fg~~~~~~k-----------~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQ-----------TFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHH-----------HHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCch-----------hHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 875 2111 011 1111 3556777788999999999999999888653
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.08 E-value=0.0039 Score=61.93 Aligned_cols=244 Identities=13% Similarity=0.066 Sum_probs=154.8
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC--CChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLL--YS--------PSDDVREQAVWALG 184 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL--~~--------~~~~v~~~a~~~L~ 184 (541)
+...|+.-|-++. +++|.-|+.+|..+.............. .+.-.|+.++ +. --..|||.|+.+|+
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 5667777777777 9999999999999876322110000111 1122222222 11 12579999999999
Q ss_pred HhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 009184 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264 (541)
Q Consensus 185 nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~ 264 (541)
.+ ..-+.- ..++..++..+ .....+++..++-.|..+ .+-- . ...++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL-~---~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFV-E---DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGC-C---CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHH-H---HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 555432 23444455444 566788999999999988 2111 1 1577888999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CC-hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCch
Q 009184 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342 (541)
Q Consensus 265 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~-~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 342 (541)
.+|..++ . ++... .++..+...|.+ ++ .......+..|+.+++.+... ..+...+|.|.+.+.++ -.
T Consensus 321 etLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999988 2 22222 345556666543 22 233455566777776655321 12347899999999999 99
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184 343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS 406 (541)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~ 406 (541)
.||..++.+|..+. ...... .+ .-.+|-.++.+++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LR-----------LI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDF-----------LV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHH-----------HH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHH-----------HH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998776 233222 11 122344566777777766663
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.00 E-value=0.026 Score=51.58 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=117.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhh----cCCC
Q 009184 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC----RGKP 234 (541)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~----~~~~ 234 (541)
+.+...|.+.+..-+..++..|.......+ +.+.. .+..+++.+. .+++..+...++.+|..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555555566666666666665543322 12211 2333333221 3567778777777776653 3222
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
.........++|.|+.-+..+.+.++..+-.++..+....+ -..+++.++.-+.+.++..+..++..++.+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 23333346789999999988888898887777766543111 12466778888899999999999999999875
Q ss_pred CCchhHHHHHhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 315 GDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 315 ~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
..... ....+ +.+..++.+. +..||..|..++..+..
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 33222 23467 9999999998 99999999999998776
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.94 E-value=0.031 Score=49.93 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=124.3
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHH-------hhCCCC-----hhhHHHHHHHHhHhhcCCchhHHH
Q 009184 256 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAE-------FLMHPS-----PSVLIPALRTVGNIVTGDDMQTQC 322 (541)
Q Consensus 256 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~-------lL~~~~-----~~v~~~al~~L~nl~~~~~~~~~~ 322 (541)
+++-++.|+..|+.--+..++....+..+ |.+..|++ .+..+. ..-...|+..+.-+++ .++....
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 44456776666665444444444444444 55555533 233222 1223455666666665 5555568
Q ss_pred HHhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184 323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI 397 (541)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 397 (541)
++++.+.-.|.+.|.... -+.+|-.+..+++.+.. ++++.+. .+++.+++|..++.++.++.-.
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~-----------fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVIN-----------FLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHH-----------HHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHH-----------HHHhhhHHHHHHHHHhhccHHH
Confidence 889999989999997653 24688889999999987 6788888 8899999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHc--------CChHHH-hhhcCCCChHHHHHHHHHHHHHHHh
Q 009184 398 KKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPL-CDLLVCPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 398 ~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~~L-~~lL~~~~~~~~~~~l~~L~~l~~~ 454 (541)
|.-|...+..+.. +.....+++.. .++..+ ..+.+.+++.+...++.+...|.+.
T Consensus 162 KtvAtfIlqKIL~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 162 KTVATFILQKILL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 9999999999987 44555554421 122222 2344567788888888877776643
No 110
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.93 E-value=0.26 Score=45.91 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=118.4
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 009184 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (541)
Q Consensus 268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 347 (541)
.++.-++...++-+++.+++..+...+..++.++....+..|-.++....-.. .--...+|.++..+.-..+.++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEEe
Confidence 34444556667778999999999999999999999999999988775332111 1113578888888864448889999
Q ss_pred HHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-------chhHHHHHHHHHHH-------hcc---
Q 009184 348 ACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-------EFDIKKEAAWAISN-------ATS--- 410 (541)
Q Consensus 348 a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-------~~~v~~~a~~aL~n-------l~~--- 410 (541)
....|+|+.++.....+ .-+..|.++.|...+... +..-++.||..++| +..
T Consensus 345 GTGFLSNVVAHKq~VKe-----------lAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWI 413 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKD-----------IAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWI 413 (619)
T ss_dssp HHHHHHHHSTTCHHHHH-----------HHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred cchHHHHHHhcccchHH-----------HHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEE
Confidence 99999999998887776 667889999999877542 23334445555554 432
Q ss_pred ---CC--------CHHHHHHHHHcCChHHHhhhcCCCC---h---HHHHHHHHHHHHHHH
Q 009184 411 ---GG--------THEQIKFLVIQGCIKPLCDLLVCPD---P---RIVTVCLEGLENILK 453 (541)
Q Consensus 411 ---~~--------~~~~~~~l~~~~~i~~L~~lL~~~~---~---~~~~~~l~~L~~l~~ 453 (541)
+| +..+.-.+++.++++.|+.+|+.+. + +++..++..+-.+++
T Consensus 414 Pm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 414 PTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp CCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred ecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 11 1233344556678899999987543 2 455566655544443
No 111
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.83 E-value=0.12 Score=48.31 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=145.1
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh---hh---hchHHHHHHhhccCChhHHHHHHHHHHH
Q 009184 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD---QV---SPALPALAHLIHSNDDEVLTDACWALSY 269 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 269 (541)
.+...+.+..|+..| ..-+-+.+..++.++.++.+........ .. ..++..|+..- +++++...+-..|..
T Consensus 73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHH
Confidence 344556777788777 6667888999999999999876332221 11 23333333333 345555555555555
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhc---CchHHHHHhhcCCCchhHHH
Q 009184 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKK 346 (541)
Q Consensus 270 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~ 346 (541)
++. .+.....++..+.+..+...+..++-++..-|..++..+.+.....+...+.. .++..+-.+|.++ +.-+|.
T Consensus 150 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR 227 (341)
T 1upk_A 150 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR 227 (341)
T ss_dssp HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred HHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence 554 44456667888888899999999999999999999999988766555555543 3677788889998 999999
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184 347 EACWTVSNITAG--NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 412 (541)
Q Consensus 347 ~a~~~L~nl~~~--~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 412 (541)
.++..|+.+... +...+.. ++-+..-+..++.+|.+....++-+|-.++--++.+.
T Consensus 228 QSlKLLgelLldr~N~~vM~~----------Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTK----------YISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHH----------HTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCchHHHHHHH----------HhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999999874 3333330 3345667889999999999999999999988887643
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.41 E-value=0.42 Score=46.95 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHH
Q 009184 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250 (541)
Q Consensus 171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 250 (541)
.+...+..|+..|..+..+-|...+. ++..++.+. .+.+..++..|...|..+|.+ .....+...|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 56889999999999999888876555 577888888 888999999999999999987 346788899999
Q ss_pred hhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 009184 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (541)
Q Consensus 251 lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 313 (541)
+|+++++.-...+-++|..+...++. +.+..+..-+..+++.+|..++..|..-.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 99999888777777777777655442 23333444443357788988888875443
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.23 E-value=0.0033 Score=57.06 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (541)
Q Consensus 288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (541)
+.|..++.++++.|+..+...++ .+.|..+ .++ +..||..+...|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 45666677777777777777654 2334444 555 788887776544
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.12 E-value=1.2 Score=43.84 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009184 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (541)
Q Consensus 214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l 293 (541)
.+....+.|+..+..+....| ......+..++.+....|..|+..|+..|-.+|.. +... .+.+.|+++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence 357888999999998888765 34467888999999999999999999999999976 3333 466789999
Q ss_pred hCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (541)
Q Consensus 294 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (541)
|..+++.-...+-.+|..+...++.. .+..+..-+.++ ++.+|..+...|..-..
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTKLK 163 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHHGG
T ss_pred HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHHHh
Confidence 99888766666666665555444322 233344444445 67788887777765443
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.08 E-value=0.19 Score=44.59 Aligned_cols=145 Identities=15% Similarity=0.053 Sum_probs=104.2
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhH
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCR 194 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~r 194 (541)
.++....+.+++. .++|..|+..|+.+ ...+ ..++.+.. +...++-.|++.+..+++.++. ..++
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3555566666666 79999999988887 3111 23566666 5556889999999999999884 3332
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 274 (541)
..++.+.... .+++..+++.++..+...+.. + ........++|.|-.+..+++.-|+..+.|.|..++..+
T Consensus 139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 1455666666 888999999999887665543 2 112233557788888887888889999999999999988
Q ss_pred hHHHHHHHH
Q 009184 275 NDKIQAVIE 283 (541)
Q Consensus 275 ~~~~~~~~~ 283 (541)
++....+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 876655554
No 116
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.92 E-value=0.15 Score=45.60 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-----hhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHH
Q 009184 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLN 334 (541)
Q Consensus 261 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~ 334 (541)
.+|+..+..++.+++. ...++++++.-.|..+|...+ +.+|..+++++|.++..++ +....+++.+++|..++
T Consensus 74 cnaLaLlQcvAshpet-r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPET-RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTTT-HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcch-hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 3444444556665554 456889999888999986543 4688899999999997554 55667789999999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHH-hhcCchhHHHHHHHHHHHhccCCC
Q 009184 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGT 413 (541)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~ 413 (541)
.++.+ +.-.|.-|.+++..|..+ .....|+-+ ..-++..+. .++..++.. .+.+++++-+.++++-..++. +
T Consensus 153 ime~G-selSKtvAtfIlqKIL~d-d~GL~YiC~-t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiircYlRLsd--n 225 (268)
T 2fv2_A 153 IMESG-SELSKTVATFILQKILLD-DTGLAYICQ-TYERFSHVA--MILGKMVLQLSKEPSARLLKHVVRCYLRLSD--N 225 (268)
T ss_dssp HHHHS-CHHHHHHHHHHHHHHHHS-HHHHHHHTS-SHHHHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--S
T ss_pred HHhhc-cHHHHHHHHHHHHHHhcc-chhHHHHHc-cHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc--C
Confidence 99999 888888999999988764 333431111 000111111 133333333 345678999999999999987 5
Q ss_pred HHHHHHHH
Q 009184 414 HEQIKFLV 421 (541)
Q Consensus 414 ~~~~~~l~ 421 (541)
+..+..+.
T Consensus 226 ~rar~aL~ 233 (268)
T 2fv2_A 226 PRAREALR 233 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 117
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.74 E-value=0.13 Score=46.22 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=109.1
Q ss_pred hhHHHHHhcCchHHHHHhhcC----C------CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHHH
Q 009184 318 MQTQCVIEYQALPCLLNLLSG----N------YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGPL 386 (541)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L 386 (541)
...+.+ ..+++..|+.+|.. . .+.....+++.+|..+.. +..... .++ ..+.+..|
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~-----------~vl~~~~~i~~l 101 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIK-----------TMLETEEGILLL 101 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHH-----------HHHTSSSHHHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHH-----------HHHcCcHHHHHH
Confidence 444444 34566666666532 1 134667788888888875 455555 555 55688889
Q ss_pred HHHhhcCchhHHHHHHHHHHHhccCCC-----HHHHHHH------HHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHHh
Q 009184 387 VALLENAEFDIKKEAAWAISNATSGGT-----HEQIKFL------VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKV 454 (541)
Q Consensus 387 ~~~l~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~ 454 (541)
...+.++.+.++..++..|..++.... ......+ -+..-...+++.++ ..+.+....++..+..++..
T Consensus 102 ~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~ 181 (233)
T 2f31_A 102 VRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 181 (233)
T ss_dssp HTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence 888988899999999888877765432 1111221 12235677888887 45678888888888888876
Q ss_pred hHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHH
Q 009184 455 GEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 498 (541)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~ 498 (541)
.+.... --.++..|..+|..+.|+.+....++++...-.
T Consensus 182 ~~dl~~-----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 182 AEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp CCCHHH-----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCCHHH-----HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 543321 123577788899999999999989988765443
No 118
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.52 E-value=0.77 Score=42.93 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=105.4
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 009184 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA----VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR 192 (541)
Q Consensus 118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~ 192 (541)
+..+.++++.+ .+.+.-++..+.-.+. .+.....+.+... +..++..+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP--~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCP--EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSC--TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCC--HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 45666666554 3566677777766655 4555555543322 2233344433 456678899999999987765
Q ss_pred hHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHH
Q 009184 193 CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWAL 267 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L 267 (541)
.++.+... ...++..+. .+.+..++..++.++.|++-.. ..........++..+..++. ..|.+....++.+|
T Consensus 181 g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 66665542 333444332 4567788888888999888543 11222333445556666665 35889999999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009184 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (541)
Q Consensus 268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~ 296 (541)
+++...+.+..+.....|+-..+-...+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99997765544433333555555555544
No 119
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.38 E-value=2 Score=48.75 Aligned_cols=310 Identities=7% Similarity=0.019 Sum_probs=165.4
Q ss_pred CHHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhc-CCCcHHHHHHHHHHHHHHhcC---
Q 009184 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG--- 147 (541)
Q Consensus 74 ~l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~i~~~a~~~L~~l~~~--- 147 (541)
.+..++..+.++ ++..+.+|-..|..+-.. + .....+...|. .+.++.++..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 345555555554 667788888888776432 1 12334444333 333489999999999987642
Q ss_pred --ChhHHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q 009184 148 --TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (541)
Q Consensus 148 --~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a 222 (541)
+++.+..+. ..++..+...... ....++...+.++..|+...-.-+ . .++++.++..+.. +......+
T Consensus 81 ~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---W-p~ll~~L~~~~~~--~~~~~e~~ 153 (1204)
T 3a6p_A 81 GMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---W-PDMLIELDTLSKQ--GETQTELV 153 (1204)
T ss_dssp GSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT---C-TTHHHHHHHHHHT--CHHHHHHH
T ss_pred cCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc---c-hHHHHHHHHHhcC--CHHHHHHH
Confidence 344444443 3345554443211 458899999999999874321100 0 1246667777633 34557778
Q ss_pred HHHHHhhhcCC-C--CCChhh-----------hhchHHHHHHhhcc-------------------CChhHHHHHHHHHHH
Q 009184 223 TWTLSNFCRGK-P--QPPFDQ-----------VSPALPALAHLIHS-------------------NDDEVLTDACWALSY 269 (541)
Q Consensus 223 ~~~L~~l~~~~-~--~~~~~~-----------~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L~~ 269 (541)
+.+|..++... . ...... ...+++.+..++.. .+..+...++.++..
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88888887542 1 111110 11334444444432 123466667777765
Q ss_pred hccCChHHHHHHHHhC--cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc--hhHHHHHh---cCchHHHHHhhc-----
Q 009184 270 LSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIE---YQALPCLLNLLS----- 337 (541)
Q Consensus 270 l~~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~~~~---~~~l~~L~~lL~----- 337 (541)
...--+- ..+.+.. +++.+..++. ++.++..|+.||..++.... .....++. ...+..++..+.
T Consensus 234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 5443221 2233332 6777776665 46689999999999997542 21111221 112334555442
Q ss_pred --CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc-hhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184 338 --GNYKKSIKKEACWTVSNITAGNREQIQVIMHVH-AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 338 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 410 (541)
+..+.++.+..+..+..+.. . ...+.... .......+ .++++.++.++.+++..+-..++.....+..
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l-~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNF-GKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHH-HHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 11135666777777777652 1 11000000 00000000 1467777777777777777777766665544
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.24 E-value=0.9 Score=40.73 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=96.0
Q ss_pred HHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC----------CcHHHHHHHHHHHHHHhc
Q 009184 78 MVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----------DYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 78 l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~l~~ 146 (541)
+++.|++.. +......+..|+..+...+..-++.+ ..+++..|+++|..- .+...+..++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 344454432 22223455666655554322225555 456677777776531 125788999999999987
Q ss_pred CChhHHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhcCC
Q 009184 147 GTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNGQ 213 (541)
Q Consensus 147 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~Ll~~l~~~ 213 (541)
+......++. .+.+..|...|.++++.++..++..|+.+|..+. .. ...++ +..-+.+++..+...
T Consensus 84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 4555666665 5788999999999999999999999998885443 12 22222 222455677777445
Q ss_pred ChhhHHHHHHHHHHhhhcCC
Q 009184 214 PKLSMLRNATWTLSNFCRGK 233 (541)
Q Consensus 214 ~~~~~~~~a~~~L~~l~~~~ 233 (541)
.+.+.+..++..+..+....
T Consensus 163 ~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPA 182 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHCCC
Confidence 55666666665555566554
No 121
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.17 E-value=0.23 Score=48.33 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=111.1
Q ss_pred chhHHHHHhcCchHHHHHhhcC----------CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHH
Q 009184 317 DMQTQCVIEYQALPCLLNLLSG----------NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGP 385 (541)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~ 385 (541)
....+.+. .+++..|+.+|.. ..+...+..++.||..+.. +..... .++ ....+..
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~-----------~vl~~~~~i~~ 166 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIK-----------TMLETEEGILL 166 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHH-----------HHHTCSSHHHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHH-----------HHHcChHHHHH
Confidence 34455555 5667777777641 1134677888889988875 355555 555 5678899
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhccCCC-----HHHHHHH------HHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHH
Q 009184 386 LVALLENAEFDIKKEAAWAISNATSGGT-----HEQIKFL------VIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILK 453 (541)
Q Consensus 386 L~~~l~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~ 453 (541)
|...+.+..+.++..|+..|.-++.... ......+ .+..-...++..|+. .+.+....++..+..++.
T Consensus 167 l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 167 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 246 (383)
T ss_dssp HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988776543 1111111 123457788888886 577888888888888887
Q ss_pred hhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHH
Q 009184 454 VGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 495 (541)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~ 495 (541)
..+.... --.++..|..+|..+.+..|....++++..
T Consensus 247 ~~~dl~~-----R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 247 PAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp TCCCHHH-----HHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred CCCCHHH-----HHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 6543321 122567788899999999998888887754
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.95 E-value=2 Score=48.80 Aligned_cols=289 Identities=11% Similarity=0.073 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhhHHHHHhcCCh
Q 009184 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SPRCRDLVLSQGGL 203 (541)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~r~~i~~~g~i 203 (541)
+..+.+|-..|..+-.. + .+...+...| .+.+..+|..|+..|.|.... .++.+..+. ...+
T Consensus 27 ~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll 95 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVM 95 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHH
Confidence 67788888888776542 2 1233333333 346789999999999987632 222233322 2223
Q ss_pred HHHHHhhcC--CChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-------
Q 009184 204 VPLLAQLNG--QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG------- 273 (541)
Q Consensus 204 ~~Ll~~l~~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~------- 273 (541)
..+...... .....++..++.++..++... |. ....+++.++.++.+ ++.....++.+|..++..
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 333222101 135677888888999888765 42 246778888888865 455566677777777532
Q ss_pred ChHHHHH----HHHh--CcHHHHHHhhCC-------------------CChhhHHHHHHHHhHhhcCCchhHHHHHhcC-
Q 009184 274 TNDKIQA----VIEA--GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ- 327 (541)
Q Consensus 274 ~~~~~~~----~~~~--g~l~~L~~lL~~-------------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~- 327 (541)
...+... +.+. .++..+..++.. .+..++..++.++.+...--+. ..+.+..
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~ 248 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENC 248 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccc
Confidence 1111111 1111 223333333322 1234667788888776653332 1233332
Q ss_pred -chHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh--------cCchh
Q 009184 328 -ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQVIMHVHAFSIIAVIEANIIGPLVALLE--------NAEFD 396 (541)
Q Consensus 328 -~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~--------~~~~~ 396 (541)
+++.+..++. ++.++..|+.+|..++... ++....++ .++....+..++..+. ..+.+
T Consensus 249 ~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li--------~~l~~~~l~~l~~~~~~~~~~~~~e~d~e 317 (1204)
T 3a6p_A 249 KLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLM--------VLFGDVAMHYILSAAQTADGGGLVEKHYV 317 (1204)
T ss_dssp HHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGG--------GGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred hHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHH--------HHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence 6777776665 4578999999999999843 33222000 1111111334444432 22456
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHH-----------cCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 397 IKKEAAWAISNATSGGTHEQIKFLVI-----------QGCIKPLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 397 v~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
+.+..+..+..+.. . ...++. .++++.+..+...++..+...++..-..+++
T Consensus 318 ~~k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 318 FLKRLCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp HHHHHHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 67777777776652 1 122221 1235666666666666655555554443443
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.80 E-value=3.2 Score=46.21 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=108.0
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhh----CCChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhh
Q 009184 161 VPIFVKLLYS----PSDDVREQAVWALGNIA----GDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNF 229 (541)
Q Consensus 161 i~~L~~lL~~----~~~~v~~~a~~~L~nl~----~~~~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l 229 (541)
+..+..++.+ .++.+++.++.+++.++ ...+.|.. ..++.+.+.+. ...+..-...++.+|.|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 4555666655 56788888998888875 23222211 12344444431 334566778889999998
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCChh
Q 009184 230 CRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPS 300 (541)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~ 300 (541)
-.. ..++.|.+++.. ....++..|+|+|..+....+...+ +.++++. ...+++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 652 356777777641 2356888999999999876554333 4566676 446788
Q ss_pred hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (541)
+|..|+..|-. +.++. ..+..+...+....+..|.......|.+++....
T Consensus 530 vRiaA~~~Lm~--t~P~~--------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 530 LRIRSCIVFFE--SKPSV--------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHHHHHH--TCCCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHH--HCcCH--------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 99999888743 22221 1345667777775578888888888888887443
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.73 E-value=1.6 Score=42.41 Aligned_cols=157 Identities=12% Similarity=0.116 Sum_probs=104.6
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcC----------CCcHHHHHHHHHHHHHH
Q 009184 76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNI 144 (541)
Q Consensus 76 ~~l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~i~~~a~~~L~~l 144 (541)
..++..|.++. ..-....+..|+.-+...+..-++.++ .+++..|+.+|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 35666666643 233345677777776653223356676 5668888888752 11257889999999999
Q ss_pred hcCChhHHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhc
Q 009184 145 ASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN 211 (541)
Q Consensus 145 ~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~Ll~~l~ 211 (541)
.. +......++. ...+..|...+.++++.++..++..|+.+|.... .. ...++ +..-+..++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 87 4555666665 5788999999999999999999999999996543 21 22222 2334677788885
Q ss_pred CCChhhHHHHHHHHHHhhhcCCC
Q 009184 212 GQPKLSMLRNATWTLSNFCRGKP 234 (541)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~~~ 234 (541)
...+.+.+..++..+..+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 44566666666666666666543
No 125
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.53 E-value=0.71 Score=40.90 Aligned_cols=139 Identities=10% Similarity=0.042 Sum_probs=96.5
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhcc-CChHHHHHHH
Q 009184 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI 282 (541)
Q Consensus 205 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~-~~~~~~~~~~ 282 (541)
.+...|-+++..+++..|+.+|..+ . .....++.+.. +...++-.|++-++.++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 4444454666678898999887766 2 12557777777 5556678899998888888774 2222
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH
Q 009184 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362 (541)
Q Consensus 283 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 362 (541)
..++.+...+.+++..+|..|...+.-.+....... --.-+++.|-.+..++ +.-||+...|.|..++..+|+.
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~---dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKE---NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTT---CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhc---CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 256778889999999999999887754332211000 0012455555566666 8899999999999999999987
Q ss_pred HH
Q 009184 363 IQ 364 (541)
Q Consensus 363 ~~ 364 (541)
+.
T Consensus 213 V~ 214 (240)
T 3l9t_A 213 VK 214 (240)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 126
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.25 E-value=0.88 Score=44.26 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHH----
Q 009184 341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE---- 415 (541)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~---- 415 (541)
+.....+++.||..+.. +..... .++ ..+.+..|...+.+..+.++..++..|..++....++
T Consensus 71 d~~~~~~~l~CLkalmN-~~~Gl~-----------~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~ 138 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMN-NKFGIK-----------TMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNE 138 (386)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHH-----------HHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHH
T ss_pred hHHHHHHHHHHHHHHhC-CHHHHH-----------HHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHH
Confidence 45667888888888875 344555 444 5578888998898888999999988777766543211
Q ss_pred -HHHHH------HHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc
Q 009184 416 -QIKFL------VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 487 (541)
Q Consensus 416 -~~~~l------~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~ 487 (541)
....+ .+..-...|++.+. ..+.+....++..+..|+...+.... --.++..|..+|..+.|..|..
T Consensus 139 ~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----R~~LR~Ef~~~GL~~il~~Lr~ 213 (386)
T 2bnx_A 139 RVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELRE 213 (386)
T ss_dssp HHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhc
Confidence 11111 12245667888776 45677888888888888876554332 1236777888999999999988
Q ss_pred CCCHHHHHH
Q 009184 488 HDNAEIYEK 496 (541)
Q Consensus 488 ~~~~~i~~~ 496 (541)
..++++...
T Consensus 214 ~~~~~L~~Q 222 (386)
T 2bnx_A 214 IENEDMKVQ 222 (386)
T ss_dssp CCCHHHHHH
T ss_pred cCChhHHHH
Confidence 888877544
No 127
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.86 E-value=0.52 Score=44.09 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHccCCCCcHHHHH-hcC----CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC--CC
Q 009184 88 GVQYECTTQFRKLLSIERSPPIEEVI-RSG----VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GA 160 (541)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g----~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~--g~ 160 (541)
+.++-++..+|-.+. .+...... +.+ ++..+...+.++..+..+.-++++++|+.. ++..+..+... .+
T Consensus 117 ~~~fPvLDLlRl~~l---~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~i 192 (304)
T 3ebb_A 117 DIVFPALDILRLSIK---HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESL 192 (304)
T ss_dssp TTCHHHHHHHHHHTT---SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHc---CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHH
Confidence 345556666665442 22222222 221 233344455444347789999999999988 56677766642 34
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (541)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 232 (541)
++.+...+.+++..++..+...+.|++......++.-.....+..+..++....+.+....++-+|.+|...
T Consensus 193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 555566666678999999999999998421100000000112344445554556788888888888888865
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.74 E-value=7.6 Score=43.24 Aligned_cols=160 Identities=13% Similarity=0.174 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHhh----hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009184 215 KLSMLRNATWTLSNF----CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (541)
Q Consensus 215 ~~~~~~~a~~~L~~l----~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L 290 (541)
++.+...++.+++.| |...+......+..+...+...+...+.+-..-++.+|+|+... ..++.|
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l 476 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI 476 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence 445555555555544 54433333344566666677777777888888899999998642 345666
Q ss_pred HHhhCC-------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCChHH
Q 009184 291 AEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQ 362 (541)
Q Consensus 291 ~~lL~~-------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~ 362 (541)
.+++.. ....++..|+++|.+++...+... -+.+++++.+ ..++++|..|+..|-.. +|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHH---CcCH
Confidence 677632 134578889999999986554333 2346666632 33789999999888543 2221
Q ss_pred HHHHHhhchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCH
Q 009184 363 IQVIMHVHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTH 414 (541)
Q Consensus 363 ~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~ 414 (541)
. .+..+...+.. .+.+|.......|.+++....+
T Consensus 546 ~------------------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 546 A------------------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp H------------------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred H------------------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 1 23345555555 5788888888888888876655
No 129
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.32 E-value=0.043 Score=49.75 Aligned_cols=136 Identities=21% Similarity=0.214 Sum_probs=70.0
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-----HhhCC-Chh
Q 009184 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-----NIAGD-SPR 192 (541)
Q Consensus 119 ~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-----nl~~~-~~~ 192 (541)
+.|..++++++ +.++..++..+ . .+.|..++++++..++..++..+. .+..+ ++.
T Consensus 101 ~~L~~ll~D~d-~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~ 161 (244)
T 1lrv_A 101 EQLSALMFDED-REVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQ 161 (244)
T ss_dssp GGGGGTTTCSC-HHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHH
Confidence 34566677776 78888777632 1 123444556666777666655211 00100 111
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 193 ~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
.|..+... ..+.++..+..+++..++..++..+ ..+.|..++.+++..|+..+...+.
T Consensus 162 VR~~aa~~-l~~~ll~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~---- 219 (244)
T 1lrv_A 162 VRKLVAKR-LPEESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS---- 219 (244)
T ss_dssp HHHHHHHH-SCGGGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC----
T ss_pred HHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC----
Confidence 22222211 1112222222555555555555431 1134555666667777766665532
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (541)
Q Consensus 273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 310 (541)
.+.|..+ .++++.|+..+...||
T Consensus 220 --------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 --------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp --------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred --------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3555556 8889999998876654
No 130
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=92.57 E-value=6.2 Score=38.10 Aligned_cols=251 Identities=13% Similarity=0.034 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc
Q 009184 135 FEAAWALTNIASG---TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (541)
Q Consensus 135 ~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~ 211 (541)
..+...+..+... .+...+..++...+-.|+.++.++|+.-|+..-.+|..+-+.-...|..+... +-..+.+.+.
T Consensus 102 qlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiy 180 (403)
T 3fga_B 102 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIY 180 (403)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhc
Confidence 3344455444442 23333444455567889999999999999999999998876555555554432 2334455443
Q ss_pred CCChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 009184 212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289 (541)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 289 (541)
......-....+.++..+..+...+- .....-....|+.+-....-. .-.....|+......++..... ++..
T Consensus 181 e~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~ 255 (403)
T 3fga_B 181 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMA 255 (403)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHH
T ss_pred CcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHH
Confidence 33333334456666666666653222 222233344455555444322 1223333444333333333222 2223
Q ss_pred HHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh
Q 009184 290 LAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368 (541)
Q Consensus 290 L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 368 (541)
+++.--..++.-...-+.-+..+...-+ ...+.+ ...++..+...+.+. +..|-..|+....| .. +.
T Consensus 256 LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i-~~~lf~~la~ci~S~-hfqVAErAL~~wnN-----e~-i~---- 323 (403)
T 3fga_B 256 LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EY-IM---- 323 (403)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HH-HH----
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHHHHHHhcc-----HH-HH----
Confidence 3333322333222233344444444332 222222 224666777788887 77777777655421 11 11
Q ss_pred hchhhHHHHHh---cCcHHHHHHHh----hcC-chhHHHHHHHHHHHhcc
Q 009184 369 VHAFSIIAVIE---ANIIGPLVALL----ENA-EFDIKKEAAWAISNATS 410 (541)
Q Consensus 369 ~~~~~~~~l~~---~~~l~~L~~~l----~~~-~~~v~~~a~~aL~nl~~ 410 (541)
.++. ..++|.++..+ ... +..++..+..++.-+..
T Consensus 324 -------~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 324 -------SLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp -------HHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 2221 12444444443 332 67888888888777654
No 131
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.41 E-value=4.4 Score=39.26 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=98.0
Q ss_pred HHHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcC----C------CcHHHHHHHHHHHHHHh
Q 009184 77 VMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA 145 (541)
Q Consensus 77 ~l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~i~~~a~~~L~~l~ 145 (541)
.++..|.+.. ..-....+..|+..+...+..-++.+. .+++..|+.+|.. . .+...+..++.||..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 3455555432 222234556666655543222255554 4567777777642 1 13578899999999998
Q ss_pred cCChhHHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhcC
Q 009184 146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNG 212 (541)
Q Consensus 146 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~Ll~~l~~ 212 (541)
. +......++. .+++..+...|.++++.++..++..|+.+|.... .. ...++ +..-+.+++..+..
T Consensus 87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 7 4555555554 5788999999999999999999999998885443 21 22222 22345667777755
Q ss_pred CChhhHHHHHHHHHHhhhcCCC
Q 009184 213 QPKLSMLRNATWTLSNFCRGKP 234 (541)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~~ 234 (541)
..+.+.+..++..+..+....+
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCS
T ss_pred CChHHHHHHHHHHHHHHHCCCC
Confidence 5666666666666666666543
No 132
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=89.41 E-value=11 Score=37.11 Aligned_cols=251 Identities=13% Similarity=0.027 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc
Q 009184 135 FEAAWALTNIASG---TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (541)
Q Consensus 135 ~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~ 211 (541)
..+...|..+... ++......++...+-.|+.++.++|+.-|+..-.+|..|-+.-...|..+... +-..+.+.+.
T Consensus 135 qlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~ 213 (449)
T 2npp_B 135 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIY 213 (449)
T ss_dssp HHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 3444555555432 12333444555677889999999999999999999988876555555555433 3344555554
Q ss_pred CCChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 009184 212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPR 289 (541)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 289 (541)
......-....+.++..+..+...+- .....-....|+.|.....-.. -.....|+......++..... ++..
T Consensus 214 e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~ 288 (449)
T 2npp_B 214 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMA 288 (449)
T ss_dssp TCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHH
T ss_pred ccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHH
Confidence 44444445566777777777753222 2222333445555555443222 223334444333333332221 2233
Q ss_pred HHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh
Q 009184 290 LAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368 (541)
Q Consensus 290 L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 368 (541)
|++.--..+..-...-+.-|..+....+ ...+.+ ...++..+...+.+. +..|-..|+..+.| +...
T Consensus 289 LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~i~----- 356 (449)
T 2npp_B 289 LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EYIM----- 356 (449)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HHHH-----
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HHHH-----
Confidence 3333322332222333344444443322 222222 224666777888887 77777777654432 1111
Q ss_pred hchhhHHHHHh---cCcHHHHHHHhhc-----CchhHHHHHHHHHHHhcc
Q 009184 369 VHAFSIIAVIE---ANIIGPLVALLEN-----AEFDIKKEAAWAISNATS 410 (541)
Q Consensus 369 ~~~~~~~~l~~---~~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~ 410 (541)
.++. ..++|.++..+.. -+..|+..+..++.-+..
T Consensus 357 -------~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 357 -------SLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp -------HHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred -------HHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1221 1245666665522 146677777777765544
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.01 E-value=6.6 Score=36.14 Aligned_cols=149 Identities=12% Similarity=0.105 Sum_probs=93.4
Q ss_pred hHHHHHHhhccC------ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184 244 ALPALAHLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (541)
Q Consensus 244 ~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 316 (541)
-+..+..++.+. +.+....++-.|..++..-..-.+.+- +..++..|. +.....+.+++.|.++|+....++
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 344455556554 445677788888888755443344333 334454554 334456779999999999999999
Q ss_pred chhHHHHHhc--CchHHHHHhhcC----C--CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184 317 DMQTQCVIEY--QALPCLLNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA 388 (541)
Q Consensus 317 ~~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 388 (541)
+.....+.+. .++..+..-|.. . ....+++.-+.+|.-|...+.. + ....+..|.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---------------F-~~~~m~~L~~ 165 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---------------L-PIYSTVVLQN 165 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---------------C---CCHHHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---------------h-hhccHHHHHH
Confidence 9887766642 344444433322 1 1335666677777777664321 1 1245577777
Q ss_pred HhhcC--chhHHHHHHHHHHHhc
Q 009184 389 LLENA--EFDIKKEAAWAISNAT 409 (541)
Q Consensus 389 ~l~~~--~~~v~~~a~~aL~nl~ 409 (541)
++... ++.++..++..+..+.
T Consensus 166 ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 166 VYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHc
Confidence 77766 8999999999888876
No 134
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.96 E-value=13 Score=33.58 Aligned_cols=98 Identities=9% Similarity=0.091 Sum_probs=69.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009184 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (541)
Q Consensus 78 l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~ 157 (541)
+++..+......+...+...+.++... ++.. . ..+++.++.+..+++ .++|...+..+...+...++....
T Consensus 20 lln~A~~~~~~~kl~~L~qa~el~~~~-dp~l---l-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~--- 90 (257)
T 3gs3_A 20 WCNELVIASPSTKCELLAKVQETVLGS-CAEL---A-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH--- 90 (257)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTTT-TGGG---H-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH---
T ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHcc-CHhH---H-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333333323368889999999977653 3321 1 335778888776666 999999999999988655544433
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009184 158 HGAVPIFVKLLYSPSDDVREQAVWALGNI 186 (541)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 186 (541)
.++.|..++.++++.+...++.+..++
T Consensus 91 --~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 91 --VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp --HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467888889888999999999888776
No 135
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=88.75 E-value=0.34 Score=29.27 Aligned_cols=38 Identities=32% Similarity=0.571 Sum_probs=27.0
Q ss_pred HhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhh
Q 009184 11 SRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRR 50 (541)
Q Consensus 11 ~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~ 50 (541)
+|...||+ +...++..+|| + ..+..|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence 57789998 44444444444 4 688889999998887774
No 136
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=88.17 E-value=5 Score=36.88 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHhHhhcCCchhHHHHHh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHH
Q 009184 299 PSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIA 376 (541)
Q Consensus 299 ~~v~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~ 376 (541)
......|+-.|-.++..-.... .++. ...+..|+ +.... .+.++..|+.+++...+.+|..+. .
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~-KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~-----------~ 107 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGY-KIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVE-----------F 107 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHH-----------H
T ss_pred HHHHHHHHHHHHHhhhhHHhhh-HHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHH-----------H
Confidence 3456677777777775433333 3333 23344444 22333 678999999999999999999988 4
Q ss_pred HHh--cCcHHHHHHHhhc-------CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC--ChHHHHHHH
Q 009184 377 VIE--ANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCL 445 (541)
Q Consensus 377 l~~--~~~l~~L~~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l 445 (541)
+.+ ..++..++.-|.. ...-+.+.-+.+|.-|+... .+ + ....+..|..++... ++.+...++
T Consensus 108 V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl 181 (315)
T 3qml_C 108 INESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS--ED---L-PIYSTVVLQNVYERNNKDKQLQIKVL 181 (315)
T ss_dssp HHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TT---C---CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hh---h-hhccHHHHHHHHccCCCCHHHHHHHH
Confidence 443 2444444444432 23356667777777777643 11 1 234567777776666 888999999
Q ss_pred HHHHHHHH
Q 009184 446 EGLENILK 453 (541)
Q Consensus 446 ~~L~~l~~ 453 (541)
..+..++.
T Consensus 182 ~li~d~f~ 189 (315)
T 3qml_C 182 ELISKILK 189 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 98888875
No 137
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.94 E-value=20 Score=34.49 Aligned_cols=89 Identities=10% Similarity=0.117 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh
Q 009184 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (541)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 167 (541)
..+...+..++.++-.. ++. .-.++++.++++-.+.+ .+++...+..|...+....+.... +++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLK-----LIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 46888888888876542 332 12568999999988887 999999999999888755555433 46788888
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q 009184 168 LYSPSDDVREQAVWALGNIA 187 (541)
Q Consensus 168 L~~~~~~v~~~a~~~L~nl~ 187 (541)
|.++++.+...++.+.+++.
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 88889999999998888773
No 138
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.25 E-value=9.2 Score=36.76 Aligned_cols=129 Identities=15% Similarity=0.196 Sum_probs=87.1
Q ss_pred hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc
Q 009184 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA 380 (541)
Q Consensus 301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (541)
.+...+.-+..++-..+.. + -.++++.++.+-... +.++|+.++..|...+....+...
T Consensus 41 ~Kl~~L~q~~EL~l~~dps---L-l~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~~---------------- 99 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT---L-LDNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELLL---------------- 99 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG---G-GGGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGHH----------------
T ss_pred HHHHHHHHHHHHHhccCHH---H-HHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 4555555555544322211 1 246788888888877 889999999988888764443332
Q ss_pred CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc---------------CChHHHhhhcCCCChHHHHHHH
Q 009184 381 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---------------GCIKPLCDLLVCPDPRIVTVCL 445 (541)
Q Consensus 381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---------------~~i~~L~~lL~~~~~~~~~~~l 445 (541)
.+++.|..++.+.++.|.+.++.+.+++-. ...++++.. .+-..++.++++.+..++..++
T Consensus 100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslYp----l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 100 KLIANLNMLLRDENVNVVKKAILTMTQLYK----VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH----HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 467788888888889999998888877631 222222222 2334666777888889999999
Q ss_pred HHHHHHHHh
Q 009184 446 EGLENILKV 454 (541)
Q Consensus 446 ~~L~~l~~~ 454 (541)
+.+..++..
T Consensus 176 KFle~VIl~ 184 (386)
T 3o2t_A 176 KFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 139
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.62 E-value=4.4 Score=33.80 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=54.6
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET 503 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~-~~~~i~~~a~~il~~ 503 (541)
++..|..-|.+.++.++..+|..|..+++.+... |...+-...+++.+..+... .++.|.+++..+|..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 4566667778889999999999999988764332 45556666677777666543 788999999999998
Q ss_pred hCCC
Q 009184 504 YWLD 507 (541)
Q Consensus 504 ~~~~ 507 (541)
|...
T Consensus 123 W~~~ 126 (163)
T 1x5b_A 123 WSEE 126 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 140
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=81.42 E-value=12 Score=36.00 Aligned_cols=120 Identities=15% Similarity=0.008 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc
Q 009184 135 FEAAWALTNIASG---TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (541)
Q Consensus 135 ~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~ 211 (541)
..+...|..+... .+...+..++...+..|+.++.++|+.-|+....+|..+-+.-...|..+... +-..+.+.+.
T Consensus 147 qlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiy 225 (392)
T 2jak_A 147 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIY 225 (392)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 3444555555432 22333444455677889999999999999999999988876555556555433 3445666664
Q ss_pred CCChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccC
Q 009184 212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255 (541)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~ 255 (541)
......-...++.++..+..+...+- .....-....|+.|....
T Consensus 226 e~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~ 270 (392)
T 2jak_A 226 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVK 270 (392)
T ss_dssp SSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSG
T ss_pred ccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCC
Confidence 44444445567777777777763332 222222344455555433
No 141
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.41 E-value=43 Score=32.86 Aligned_cols=243 Identities=16% Similarity=0.118 Sum_probs=129.2
Q ss_pred HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 009184 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIA 187 (541)
Q Consensus 109 ~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~ 187 (541)
....++...+-.|+.++.++| +.-|...-.+|..|-......|..+... +-..+.+++.. ....-....+.+++.|.
T Consensus 155 ~k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 155 AKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp GGGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 344556678889999999998 8989888888888877555555554432 22345555533 22222234667777776
Q ss_pred CCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHH
Q 009184 188 GDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266 (541)
Q Consensus 188 ~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~ 266 (541)
.+-. ..+..... -....|+.+.....-.........++..++..+|. ....++..|++.--..+..-..--+.-
T Consensus 233 nGfa~PLKeehk~-fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKI-FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHH-HHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHH-HHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH----hHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 4321 11111100 01223333332222233344566666666654432 222333333333222333322223333
Q ss_pred HHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh--cCchHHHHHhhcCCC---
Q 009184 267 LSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNY--- 340 (541)
Q Consensus 267 L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~--- 340 (541)
+..+... .+...+.+.. .++..+...+.+++..|.+.|+..+.| +.....+.+ ..++|.+...|....
T Consensus 308 leeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~p~L~~~s~~H 381 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISDNAAKILPIMFPSLYRNSKTH 381 (449)
T ss_dssp HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHTTHHHHHHHHHHHHTSCTTCC
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHHhchhhhHHhhHHHHHHHHHHh
Confidence 3344332 3333333332 577888888999999999998866643 222211111 235667766653221
Q ss_pred -chhHHHHHHHHHHHHhcCChHHHH
Q 009184 341 -KKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 341 -~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
+..++..+..++.-+...++....
T Consensus 382 Wn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 382 WNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp SSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 567888888888877776665544
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=79.61 E-value=6.6 Score=33.00 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=56.6
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc------CCCHHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 498 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~------~~~~~i~~~a~ 498 (541)
++..|..-|.+.++.++..+|..|..+++.+... |...+-...+++.|..+.. ..+.+|++++.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 120 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVI 120 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 4567777778899999999999999998865432 5556666777788877754 35789999999
Q ss_pred HHHHHhCCCC
Q 009184 499 KLLETYWLDD 508 (541)
Q Consensus 499 ~il~~~~~~~ 508 (541)
.+|..|...-
T Consensus 121 ~li~~W~~~f 130 (171)
T 1juq_A 121 ELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999876543
No 143
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=79.47 E-value=5.6 Score=43.76 Aligned_cols=187 Identities=13% Similarity=0.058 Sum_probs=110.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC---CChhhHHHHHHHHHHhhhcCC-CCC
Q 009184 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSNFCRGK-PQP 236 (541)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~---~~~~~~~~~a~~~L~~l~~~~-~~~ 236 (541)
+..|+++--+..++||..|-.+|..+...-+..+..+ ++.+++.|.. ..+.+-.+-|+++|..-.... -..
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 5667777788899999999999999887666555553 5667776644 455566667777665211111 122
Q ss_pred ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC--------------------C----hHHHHH-----------H
Q 009184 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--------------------T----NDKIQA-----------V 281 (541)
Q Consensus 237 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~--------------------~----~~~~~~-----------~ 281 (541)
+......+++.|+.....+.+.++.-+-.+...+... + ...... .
T Consensus 210 d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~ 289 (997)
T 1vsy_5 210 DYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYY 289 (997)
T ss_dssp CHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHH
T ss_pred ChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777776666665544333232222110 0 000111 1
Q ss_pred HH--hCcHHHHHHhh-CCCC--hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184 282 IE--AGVFPRLAEFL-MHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (541)
Q Consensus 282 ~~--~g~l~~L~~lL-~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (541)
.+ .++...++.+. .... |.....+++.+.++....+. .....++..+++.+.++ ++.+|..|..++..+.
T Consensus 290 ~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~il 364 (997)
T 1vsy_5 290 LSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLSTC 364 (997)
T ss_dssp HHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHH
Confidence 11 13344444555 3456 88888888886666644331 12234566788888888 9999999988776554
Q ss_pred c
Q 009184 357 A 357 (541)
Q Consensus 357 ~ 357 (541)
.
T Consensus 365 ~ 365 (997)
T 1vsy_5 365 N 365 (997)
T ss_dssp H
T ss_pred H
Confidence 3
No 144
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=79.36 E-value=4.3 Score=32.89 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=53.2
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 504 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~ 504 (541)
++..|..-|.+.++.++..+|..|..+++.+... |...+....+++.+..+....++.|+++...++..+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4566666677888999889999888888754332 444555566666776666667899999999999987
Q ss_pred CC
Q 009184 505 WL 506 (541)
Q Consensus 505 ~~ 506 (541)
..
T Consensus 113 ~~ 114 (140)
T 3ldz_A 113 TD 114 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.57 E-value=6.9 Score=31.97 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=56.4
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc------CCCHHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 498 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~------~~~~~i~~~a~ 498 (541)
++..|..-|.+.++.++..+|..|..+++.+... |...+....+++.|..+.. ..+++|++++.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~----------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 108 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVI 108 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHH
Confidence 4566666778899999999999999988764332 5666666777888877754 25899999999
Q ss_pred HHHHHhCCCC
Q 009184 499 KLLETYWLDD 508 (541)
Q Consensus 499 ~il~~~~~~~ 508 (541)
.+|..+...-
T Consensus 109 ~li~~W~~~f 118 (148)
T 1mhq_A 109 EILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999876543
No 146
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=77.24 E-value=5.1 Score=32.29 Aligned_cols=73 Identities=11% Similarity=0.174 Sum_probs=50.8
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh---cCCC--------HHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ---THDN--------AEI 493 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~---~~~~--------~~i 493 (541)
+++.|..=|+..++.+...+|.+|..|+..|... |...+.+.- ..|..|. ..++ ..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~----------f~~~~r~~~--~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE----------FRREMQRNS--VAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH----------HHHHHHHTT--HHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH----------HHHHHHHhH--HHHHHHHhcCCCCCcccccchhHHH
Confidence 4667777778888888899999999988766432 444444332 3355443 3333 779
Q ss_pred HHHHHHHHHHhCCCCC
Q 009184 494 YEKSVKLLETYWLDDE 509 (541)
Q Consensus 494 ~~~a~~il~~~~~~~~ 509 (541)
++.|.++++-.|+++.
T Consensus 118 R~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 118 RETAHETISAIFSEEN 133 (140)
T ss_dssp HHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHhCcCC
Confidence 9999999999998654
No 147
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.08 E-value=7.1 Score=31.91 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=55.5
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc------CCCHHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 498 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~------~~~~~i~~~a~ 498 (541)
++..|..-+.+.++.++..+|..|..+++.+... |...+....+++.|..+.. ..+++|+++..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~----------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 118 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL 118 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH----------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence 4566666677889999999999999888755332 5566666777888877764 46899999999
Q ss_pred HHHHHhCC
Q 009184 499 KLLETYWL 506 (541)
Q Consensus 499 ~il~~~~~ 506 (541)
.+|..+..
T Consensus 119 ~li~~W~~ 126 (149)
T 3g2s_A 119 ELLYSWTV 126 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998854
No 148
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=76.37 E-value=4.4 Score=32.83 Aligned_cols=72 Identities=6% Similarity=0.008 Sum_probs=54.4
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 453 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~ 453 (541)
++..|..-+.+.++.++..|+..|-.++.++.......+.+...++.|..+++..++.|...++..+..-..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 456677778888999999999988888887766666565566677777777766788888888777765543
No 149
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.60 E-value=4.1 Score=34.01 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=52.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
+.+..+.+.|+++++.+++.|+..|-.+...-......++....++..|+.++....++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888877653222333555566788888888753447888888877776654
No 150
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=74.17 E-value=9.3 Score=31.18 Aligned_cols=70 Identities=9% Similarity=-0.093 Sum_probs=54.9
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC------CChHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENI 451 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~~l~~L~~l 451 (541)
++..|..-+.+.++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|...++..+..-
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 456677778889999999999999999988777777777778888889888864 3567777776655443
No 151
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=72.20 E-value=55 Score=29.38 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=73.2
Q ss_pred CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhh
Q 009184 381 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 460 (541)
Q Consensus 381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~ 460 (541)
++++.++.+..+.+.++|+..+..|...+.. .++.. ..+++.|..+++++|+.++..++.+...+....=..-.
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777766667888999888888877642 22222 23577888888888888888888777777653322111
Q ss_pred cCCCC---cchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184 461 LGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 505 (541)
Q Consensus 461 ~~~~~---~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~ 505 (541)
..... .+..-..+ ....+.|..+-.+.+..++-.|.+.+++..
T Consensus 127 ~~~~~~~~~~~~W~~m--~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNIL--SLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHH--HHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHH--HHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 10000 01111111 233456666678899999999998888844
No 152
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=72.17 E-value=13 Score=30.38 Aligned_cols=72 Identities=8% Similarity=-0.075 Sum_probs=56.9
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC------CChHHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILK 453 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~~l~~L~~l~~ 453 (541)
++..|..-+.+.++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|...++..+..-..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 556777788889999999999999999988877777777777888888888863 466788877776665543
No 153
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.31 E-value=9.6 Score=31.99 Aligned_cols=71 Identities=8% Similarity=-0.053 Sum_probs=53.6
Q ss_pred cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC------CChHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL 452 (541)
Q Consensus 382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~~l~~L~~l~ 452 (541)
++..|..-+.+.++.++..|+..|-.++.++.......+.+...+..|+.++.. .++.|...++..|..-.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999987666666666677788888888863 34677777776655433
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.96 E-value=14 Score=32.69 Aligned_cols=72 Identities=13% Similarity=0.268 Sum_probs=53.0
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH-hcCCCHHHHHHHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLET 503 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L-~~~~~~~i~~~a~~il~~ 503 (541)
++..|..-|.+.++.++..+|..|..+++.+... |...+....+++.|..+ ....+++|++++..+|..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~----------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT----------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH----------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH----------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4566667778899999999999999988765432 44455555666666655 356789999999999998
Q ss_pred hCC
Q 009184 504 YWL 506 (541)
Q Consensus 504 ~~~ 506 (541)
+..
T Consensus 116 W~~ 118 (226)
T 3zyq_A 116 WAH 118 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.94 E-value=16 Score=32.11 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=52.0
Q ss_pred ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 009184 425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLET 503 (541)
Q Consensus 425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~i~~~a~~il~~ 503 (541)
++..|..-|.+.++.++..+|..|..+++.+... |...+-...+++.|..+. ...+++|++++..+++.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~----------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH----------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4556666677899999999999999998865432 344444555666665553 46789999999999988
Q ss_pred hCC
Q 009184 504 YWL 506 (541)
Q Consensus 504 ~~~ 506 (541)
+-.
T Consensus 113 W~~ 115 (220)
T 1dvp_A 113 WAY 115 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 156
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=65.62 E-value=56 Score=31.37 Aligned_cols=191 Identities=16% Similarity=0.095 Sum_probs=93.9
Q ss_pred HHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC
Q 009184 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD 189 (541)
Q Consensus 111 ~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~ 189 (541)
..++...+..|+.++.++| +.-|...-.+|..|-......|..+.. .+-..+.+++.. ....-....+..++.+..+
T Consensus 169 ~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 169 KYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp TTSCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 3445567889999999998 888888888888877655555555443 223455666644 2222223456666666532
Q ss_pred Ch-hhHHHHHhcCChHHHHHhhcCCCh-hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHH
Q 009184 190 SP-RCRDLVLSQGGLVPLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL 267 (541)
Q Consensus 190 ~~-~~r~~i~~~g~i~~Ll~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L 267 (541)
-. ..++.... -....|+.+. +... .........++..++..++. ....++..|++.--..+..-..--+.-+
T Consensus 247 fa~PLKeehk~-Fl~~vLlPLh-k~~~l~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~el 320 (392)
T 2jak_A 247 FALPLKEEHKI-FLLKVLLPLH-KVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNEL 320 (392)
T ss_dssp CCSSCCHHHHH-HHHHTTGGGG-TSGGGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHSSCSSCCTTHHHHHHHH
T ss_pred cCCCCcHHHHH-HHHHHhHhhc-cCCcHHHhHHHHHHHHHHHHhcCch----hHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 21 12121100 0122233333 2222 22334555666665554321 1222333333322111211111111222
Q ss_pred HHhccC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184 268 SYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (541)
Q Consensus 268 ~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 310 (541)
..+... .+.....+. ..++..+...+.+++..|.+.|+..+.
T Consensus 321 eeiLe~~~~~~f~~i~-~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 321 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHTCCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 222211 233333222 256777788888888888888876654
No 157
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=64.93 E-value=1e+02 Score=29.67 Aligned_cols=229 Identities=12% Similarity=0.062 Sum_probs=125.3
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCc---
Q 009184 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDD--- 317 (541)
Q Consensus 242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~--- 317 (541)
...+-.|+.++.++|+.-+.....+|..+-..-..... ++...+-..+..++.. ....-....+.++|.+..|-.
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~-~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 44677788999999999888888888776543333222 2222333445555533 333446678888888887652
Q ss_pred --hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCch
Q 009184 318 --MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEF 395 (541)
Q Consensus 318 --~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~ 395 (541)
++.. + ....|+++-+...-......-..++..+...++.... . ++..|++. .+..
T Consensus 207 keehk~-f----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~-----------~-----vi~~LLk~--WP~t 263 (403)
T 3fga_B 207 KEEHKI-F----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE-----------P-----VVMALLKY--WPKT 263 (403)
T ss_dssp CHHHHH-H----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHH-----------H-----HHHHHHHT--CCSS
T ss_pred hHHHHH-H----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHH-----------H-----HHHHHHHh--CCCC
Confidence 2221 1 1234555555542233334555666666655454433 1 22223222 1222
Q ss_pred hHHHHH--HHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHH--HHhhHhhhhcCCCCcchhhh
Q 009184 396 DIKKEA--AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI--LKVGEAEKNLGNTDVNVFTQ 471 (541)
Q Consensus 396 ~v~~~a--~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l--~~~~~~~~~~~~~~~~~~~~ 471 (541)
...++. +.-+..++....+.....+ ...+...+..++.+++-.|.+.|+....+= +..-.... ..+..
T Consensus 264 ns~KevlFL~Ele~iLe~~~~~~f~~i-~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~-------~~IlP 335 (403)
T 3fga_B 264 HSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA-------AKILP 335 (403)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH-------HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhH-------HHHHH
Confidence 333333 3334455555555554442 234677888899999999888887543211 11111100 00111
Q ss_pred HhhhcchHHHHHH-HhcCCCHHHHHHHHHHHHHhCCC
Q 009184 472 MIDDAEGLEKIES-LQTHDNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 472 ~i~~~~~~~~l~~-L~~~~~~~i~~~a~~il~~~~~~ 507 (541)
. .+..|.. ..+|=|+.|+..+..++..+.+-
T Consensus 336 i-----i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 336 I-----MFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp H-----HHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred H-----HHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 1 1344544 36888999999999999887543
No 158
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.15 E-value=5.3 Score=35.37 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=51.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
+.+..+.+.|++.++.+++.|+..|-.+...-..+...++....++..|+.+++...++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888777653222233444556677777777654447888888877776654
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=57.75 E-value=48 Score=29.69 Aligned_cols=106 Identities=9% Similarity=-0.008 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC----C---ChhhHHHHHHHHHHhhhcCC--CCCChh
Q 009184 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----Q---PKLSMLRNATWTLSNFCRGK--PQPPFD 239 (541)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~----~---~~~~~~~~a~~~L~~l~~~~--~~~~~~ 239 (541)
.+.++..+-.++++++|+..+....+..+........++..+.. . .+..++..++..+.|++-.. ......
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e 179 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLE 179 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTT
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHH
Confidence 34567888999999999997776345555443334455554422 1 35677888888888887542 111122
Q ss_pred hhhchHHHHHHhhc-----cCChhHHHHHHHHHHHhccCC
Q 009184 240 QVSPALPALAHLIH-----SNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 240 ~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~l~~~~ 274 (541)
....++..+...+. ..|++....++-+++++...+
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 22233333333211 237788899999999887533
No 160
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=57.62 E-value=7.3 Score=34.31 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=50.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (541)
Q Consensus 73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~ 146 (541)
+.+..+.+.|++.++.+++.|+..|-.++..-..+...++.+..++..|+.++++..++.++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46677778888888888888888888877653122233444556777777777654447788877777666553
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.71 E-value=31 Score=28.34 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=51.0
Q ss_pred ChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHH-HHHHh---cCCCHHHHHHHHH
Q 009184 425 CIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQ---THDNAEIYEKSVK 499 (541)
Q Consensus 425 ~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l~~L~---~~~~~~i~~~a~~ 499 (541)
++..|..-|+ ..++.++..+|..|..+++.+... |...+-...+++. |..+. ..+...|++++..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~----------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~ 123 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR----------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN 123 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH----------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH----------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 4556666676 478889999999999988764332 4555666667776 55553 2356799999999
Q ss_pred HHHHhCC
Q 009184 500 LLETYWL 506 (541)
Q Consensus 500 il~~~~~ 506 (541)
+|..+..
T Consensus 124 li~~W~~ 130 (157)
T 1elk_A 124 LIQSWAD 130 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 162
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=55.89 E-value=36 Score=30.52 Aligned_cols=101 Identities=7% Similarity=0.069 Sum_probs=60.8
Q ss_pred CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-------CchhHHHHHHHHHHHHhcCChHHHHHHHh
Q 009184 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-------YKKSIKKEACWTVSNITAGNREQIQVIMH 368 (541)
Q Consensus 296 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 368 (541)
...+..+.-++++++|+........+.+........++..+.+. .+..++..++..+-|++........
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----
Confidence 45677899999999999986663333343332333444433221 1567888999999999872111000
Q ss_pred hchhhHHHHHhcCcHHHHHHHhh---------cCchhHHHHHHHHHHHhcc
Q 009184 369 VHAFSIIAVIEANIIGPLVALLE---------NAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 369 ~~~~~~~~l~~~~~l~~L~~~l~---------~~~~~v~~~a~~aL~nl~~ 410 (541)
+......+++.+. ..+.+....++.|+++++.
T Consensus 177 ----------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 ----------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp ----------CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 0112333444443 1367888889999999985
No 163
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=55.77 E-value=1.2e+02 Score=33.33 Aligned_cols=199 Identities=12% Similarity=0.065 Sum_probs=110.6
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----CCChhhHHHHHHHHh----
Q 009184 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVG---- 310 (541)
Q Consensus 239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~----~~~~~v~~~al~~L~---- 310 (541)
.....++.-|+.+-.+.-.+|+..|-.+|......-...... +++.+++.|. ..+.+-.+-|+.+|.
T Consensus 129 ~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 129 KLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp SHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 344667777888777888999999999998877554433332 3455555553 445556667777654
Q ss_pred -HhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh----------HHHHHHHh-----------
Q 009184 311 -NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR----------EQIQVIMH----------- 368 (541)
Q Consensus 311 -nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----------~~~~~~~~----------- 368 (541)
..+..+-... ..+++.|++....+ ++.+++-+-.+...+..... ..+..+..
T Consensus 204 ~~~~~~d~~~~-----~~~~~ali~~~~~d-KpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~ 277 (997)
T 1vsy_5 204 HRKLMTDYKDI-----GRLIFLLIECCRVN-ELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEA 277 (997)
T ss_dssp HHHGGGCHHHH-----HHHHHHHHHTCSCS-SSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHH
T ss_pred hhHHhcChHHH-----HHHHHHHHHhCcCC-CHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 1121111111 23455666665555 77777666555445443100 00000000
Q ss_pred --hchhh----HHHHHhcCcHHHHHHHhhc-Cc--hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChH
Q 009184 369 --VHAFS----IIAVIEANIIGPLVALLEN-AE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR 439 (541)
Q Consensus 369 --~~~~~----~~~l~~~~~l~~L~~~l~~-~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~ 439 (541)
...-. +... -.++...|++.++. .+ .+....++..+.++...-+.. ....+++.+.+.+.+++|.
T Consensus 278 ~~~~~~~~r~~~~~~-~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp~ 351 (997)
T 1vsy_5 278 VKLAKKKKREYYLSL-LVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHPE 351 (997)
T ss_dssp HHHHTTHHHHHHHHH-HHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCHH
Confidence 00000 1000 12344455565522 35 778888888866666422100 1112466677888889999
Q ss_pred HHHHHHHHHHHHHHh
Q 009184 440 IVTVCLEGLENILKV 454 (541)
Q Consensus 440 ~~~~~l~~L~~l~~~ 454 (541)
++..++.++..++..
T Consensus 352 ~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 352 IIHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888765
No 164
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=55.42 E-value=38 Score=27.18 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=52.7
Q ss_pred CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc-CChHHHhhhcCCCC--------hHHHHHHHHHHHHH
Q 009184 381 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPD--------PRIVTVCLEGLENI 451 (541)
Q Consensus 381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~--------~~~~~~~l~~L~~l 451 (541)
.+++.|..-|...++.++..|+.+|-.|+..|.+.....+.+. ..|+.+.++--.+| ..|+..+=+++..|
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 3677888889998999999999999999999988888877654 33555554433333 24677766666655
Q ss_pred HH
Q 009184 452 LK 453 (541)
Q Consensus 452 ~~ 453 (541)
..
T Consensus 129 ~d 130 (140)
T 1vdy_A 129 FS 130 (140)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 165
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=53.93 E-value=34 Score=27.11 Aligned_cols=95 Identities=18% Similarity=0.088 Sum_probs=60.4
Q ss_pred CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhh
Q 009184 381 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 460 (541)
Q Consensus 381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~ 460 (541)
.++|.|+..|++.+..+...++..|..+-. . +++.+...|.++|..=. -++|..++..-+..
T Consensus 31 p~lp~LL~WLQD~NWPvA~~i~~~L~~~~~----~---------l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~-- 92 (134)
T 3ut4_A 31 PIIFDLLKWLQDYNWPIAKDILPVVVLHQS----I---------AMPHILTILQGNDIMWK---YWVIKLMIPYLIYP-- 92 (134)
T ss_dssp HHHHHHHGGGSCTTSTTHHHHHHHHHHTHH----H---------HHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH--
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHccH----h---------hHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH--
Confidence 367889999999999998888888776421 1 34555666677776533 34444444322111
Q ss_pred cCCCCcchhhhHhhhcchHHHHHHHhcC-----CCHHHHHHHHHHHHHhCC
Q 009184 461 LGNTDVNVFTQMIDDAEGLEKIESLQTH-----DNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 461 ~~~~~~~~~~~~i~~~~~~~~l~~L~~~-----~~~~i~~~a~~il~~~~~ 506 (541)
.. ......|+.+... ...++.+.|..|+++||.
T Consensus 93 --------~~-----~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 93 --------NK-----QLVKSELERLSSLEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp --------HH-----HHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred --------HH-----HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcc
Confidence 01 1223456666554 568899999999999986
No 166
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=53.17 E-value=43 Score=32.47 Aligned_cols=103 Identities=8% Similarity=0.063 Sum_probs=64.4
Q ss_pred hCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-------CchhHHHHHHHHHHHHhcCChHHHHHH
Q 009184 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-------YKKSIKKEACWTVSNITAGNREQIQVI 366 (541)
Q Consensus 294 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~ 366 (541)
+....+..+..++++++|+........+.+........++..+... .+..++..++..+-|++.......
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--- 347 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 347 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 3345678899999999999986653333333323345555554321 145788888889999986211100
Q ss_pred HhhchhhHHHHHhcCcHHHHHHHhh---------cCchhHHHHHHHHHHHhcc
Q 009184 367 MHVHAFSIIAVIEANIIGPLVALLE---------NAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 367 ~~~~~~~~~~l~~~~~l~~L~~~l~---------~~~~~v~~~a~~aL~nl~~ 410 (541)
.+..++..+.+.+. ..+.+....++-||++++.
T Consensus 348 -----------~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 348 -----------SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp -----------SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred -----------chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 00123344555554 2478899999999999986
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=52.65 E-value=52 Score=31.93 Aligned_cols=131 Identities=12% Similarity=0.029 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC
Q 009184 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (541)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~ 212 (541)
+.-++..|.-++...+.. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555666666665533211 2233333 23445678889999999999987765334443322234556655521
Q ss_pred -------CChhhHHHHHHHHHHhhhcCC--CCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 009184 213 -------QPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH---------SNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 213 -------~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~l~~~~ 274 (541)
..+..++..++.++.|++-.. .... ..+++.+..++. ..|.+....++-+|++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 125567778888888887542 1111 233344444444 358899999999999998544
Q ss_pred h
Q 009184 275 N 275 (541)
Q Consensus 275 ~ 275 (541)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 168
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=49.28 E-value=41 Score=31.92 Aligned_cols=102 Identities=7% Similarity=0.046 Sum_probs=62.3
Q ss_pred CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcC----C---CchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----N---YKKSIKKEACWTVSNITAGNREQIQVIM 367 (541)
Q Consensus 295 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 367 (541)
....+..+..++++++|+........+.+........++..+.. . .+..++..++..+-|++.......
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---- 284 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---- 284 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc----
Confidence 34567889999999999998665333333222122334443321 1 146788888899999986211100
Q ss_pred hhchhhHHHHHhcCcHHHHHHHhh---------cCchhHHHHHHHHHHHhcc
Q 009184 368 HVHAFSIIAVIEANIIGPLVALLE---------NAEFDIKKEAAWAISNATS 410 (541)
Q Consensus 368 ~~~~~~~~~l~~~~~l~~L~~~l~---------~~~~~v~~~a~~aL~nl~~ 410 (541)
.+...+..+.+.+. ..+.+....++-||++++.
T Consensus 285 ----------~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 285 ----------SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp ----------SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ----------chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 01123345555554 3578999999999999986
No 169
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=49.14 E-value=51 Score=31.27 Aligned_cols=131 Identities=12% Similarity=0.029 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC
Q 009184 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (541)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~ 212 (541)
+.-++..|.-++...+. .+.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+..
T Consensus 180 ~FP~LDLLRl~v~~~~~-------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 55577666666653321 12333333 23445678889999999999987765334443222123445554421
Q ss_pred -------CChhhHHHHHHHHHHhhhcCC--CCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 009184 213 -------QPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH---------SNDDEVLTDACWALSYLSDGT 274 (541)
Q Consensus 213 -------~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~l~~~~ 274 (541)
..+..++..++.++.|++-.. .... ..+++.+..++. ..|.+....++-+|++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 125667778888888887542 1111 233344555554 358899999999999998544
Q ss_pred h
Q 009184 275 N 275 (541)
Q Consensus 275 ~ 275 (541)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=48.81 E-value=19 Score=27.22 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=32.8
Q ss_pred hhHhhhcchHHHHHHHhcC-CCHHHHHHHHHHHHHhCCC
Q 009184 470 TQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLETYWLD 507 (541)
Q Consensus 470 ~~~i~~~~~~~~l~~L~~~-~~~~i~~~a~~il~~~~~~ 507 (541)
...+.+.+.=..+..|..| ++++|...|..++..|-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 6678888888889999876 9999999999999998654
No 171
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=43.63 E-value=52 Score=26.94 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=51.2
Q ss_pred cHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHH-HhhhcCC---CChHHHHHHHHHHHHHH
Q 009184 382 IIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP-LCDLLVC---PDPRIVTVCLEGLENIL 452 (541)
Q Consensus 382 ~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~-L~~lL~~---~~~~~~~~~l~~L~~l~ 452 (541)
++..|..-+. +.++.++..|+..|-.++.++.......+.+...++. |+.++.. ++..|...++..+..-.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4556777776 4788999999999999998877777666677777877 7777742 23467777766555543
No 172
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=42.71 E-value=5.3 Score=37.37 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=28.7
Q ss_pred CchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhcc
Q 009184 8 KADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG 52 (541)
Q Consensus 8 ~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~ 52 (541)
.+.+|+..||+...+.+.. +|++...+..|++|.+.....|+..
T Consensus 28 a~HPR~sqyK~k~~~~~Q~-~RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQS-ERRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCC-HHHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6678999999843333333 3445566777888999999999864
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=37.86 E-value=2e+02 Score=24.85 Aligned_cols=137 Identities=7% Similarity=-0.008 Sum_probs=79.3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCCchhHHHH
Q 009184 246 PALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (541)
Q Consensus 246 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~ 323 (541)
..+..+..++..+.+.-++..+...... .++. ++.+-.++. -+++.+....+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 3445556666667777777777655422 2211 222233443 466788777667777776544322
Q ss_pred HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHH
Q 009184 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAW 403 (541)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 403 (541)
..+.+.....++ +.-+++.|+-.+-.-.. ..... . +++.+-..+.+++.-|++.+.|
T Consensus 125 ----~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~--~~~~~-----------~-----~~~i~~~~~~d~~~yV~kavgW 181 (220)
T 2b6c_A 125 ----LPTIFALFYGAE-NFWNRRVALNLQLMLKE--KTNQD-----------L-----LKKAIIYDRTTEEFFIQKAIGW 181 (220)
T ss_dssp ----HHHHHHHHTTCS-SHHHHHHHHHTTTTCGG--GCCHH-----------H-----HHHHHHHTTTCCCHHHHHHHHH
T ss_pred ----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHH--CCCHH-----------H-----HHHHHHHhCCChHHHHHHHHHH
Confidence 234577788888 88788777664421111 11111 1 2333444667778899999999
Q ss_pred HHHHhccCCCHHHHHH
Q 009184 404 AISNATSGGTHEQIKF 419 (541)
Q Consensus 404 aL~nl~~~~~~~~~~~ 419 (541)
+|..+... +++....
T Consensus 182 ~Lr~~~k~-~~~~v~~ 196 (220)
T 2b6c_A 182 SLRQYSKT-NPQWVEE 196 (220)
T ss_dssp HHHHHTTT-CHHHHHH
T ss_pred HHHHHHhh-CHHHHHH
Confidence 99999875 4554333
No 174
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=37.80 E-value=4.9e+02 Score=29.44 Aligned_cols=299 Identities=12% Similarity=0.086 Sum_probs=142.6
Q ss_pred CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hh
Q 009184 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP---RC 193 (541)
Q Consensus 117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~ 193 (541)
+...+.+++.-.. ..+|...+..|-.|..++ ++.. ++..|..+|.. ++.+.-.++.+|+++.-+.. +.
T Consensus 158 l~~ki~~vl~vap-~~lQ~diI~sLPeIl~ds-~H~~------v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~v 228 (1323)
T 3s4w_B 158 LTAQMMQLISVAP-VNLQHDFITSLPEILGDS-QHAN------VGKELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSKI 228 (1323)
T ss_dssp HHHHHHHHHHHSC-TTTHHHHHHTHHHHSCGG-GHHH------HHHHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHhCc-HHHHHHHHHHhHHHhcch-hhHH------HHHHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHHH
Confidence 3455666665554 577777777777777643 2221 23456666654 33466677777777764442 22
Q ss_pred HHHHH------hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC----CC-------------------CChhhhhch
Q 009184 194 RDLVL------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQ-------------------PPFDQVSPA 244 (541)
Q Consensus 194 r~~i~------~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~----~~-------------------~~~~~~~~~ 244 (541)
|..++ ....+|.+++.|.++.+..-...+...|..-.... |. .......++
T Consensus 229 r~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~ 308 (1323)
T 3s4w_B 229 RQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDC 308 (1323)
T ss_dssp HHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHHH
T ss_pred HHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccch
Confidence 33332 12237777777654333222222222232211110 00 000000111
Q ss_pred HHHHHHhhcc---CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCc---
Q 009184 245 LPALAHLIHS---NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDD--- 317 (541)
Q Consensus 245 l~~L~~lL~~---~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~--- 317 (541)
.-.++..+++ ....+...-+..+..+....+ ..+++.++-++ .+.+...+..|-.++.+-+....
T Consensus 309 ~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~ 380 (1323)
T 3s4w_B 309 IVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQE 380 (1323)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchH
Confidence 1122333322 144455555555555543222 13444444333 22233345555555555443221
Q ss_pred hhHH-------HHHhcCchHHHH----HhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184 318 MQTQ-------CVIEYQALPCLL----NLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386 (541)
Q Consensus 318 ~~~~-------~~~~~~~l~~L~----~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L 386 (541)
.... .++ ...++.++ .++.+. ++.++..+...-..+........+ ..++..|
T Consensus 381 ~ll~~~f~~h~~vL-~~~f~siL~La~~Ll~S~-~~~v~~Fg~~lY~~lF~~fd~~~q---------------qeVl~~L 443 (1323)
T 3s4w_B 381 QLLDSAFSTHYLVL-KDICPSILLLAQTLFHSQ-DQRIILFGSLLYKYAFKFFDTYCQ---------------QEVVGAL 443 (1323)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHSSCHHHH---------------HHHHHHH
T ss_pred HHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhccchhH---------------HHHHHHH
Confidence 1111 111 23333333 445566 788887777776666664322211 2456666
Q ss_pred HHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184 387 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 452 (541)
Q Consensus 387 ~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~ 452 (541)
+...-++...-...|+.+|..++.. .+....... -.+..+.+.++.-+..-+..+...|..+.
T Consensus 444 v~hi~sg~~~eVd~ALdvL~~L~~~-~~~~l~~~a--~~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 444 VTHVCSGTEAEVDTALDVLLELIVL-NASAMRLNA--AFVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHH-CHHHHHHTH--HHHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCcHHHHHHHHHHHHHHhc-CHHHHhHHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 6665555444445588888887763 333322211 23566667666656554555566676654
No 175
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=37.46 E-value=88 Score=25.19 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=54.4
Q ss_pred HHHHHHHcCChHHHhhhcCC------CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC-
Q 009184 416 QIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH- 488 (541)
Q Consensus 416 ~~~~l~~~~~i~~L~~lL~~------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~- 488 (541)
....+++.|++..+-.-|.- ++..++..++.+|..+= .. .+.+.++|.-..+..+..|
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I~--------------~e~Lk~SglGkvv~~l~k~~ 117 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-IH--------------KEHLVTSGVGKIVYFYSINP 117 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC--------------HHHHHHHCHHHHHHHHHHCT
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-CC--------------HHHhhcCCCCcchhhhhcCC
Confidence 34667788888888877753 44578888887777651 11 4456678877778888766
Q ss_pred -CCHHHHHHHHHHHHHhC
Q 009184 489 -DNAEIYEKSVKLLETYW 505 (541)
Q Consensus 489 -~~~~i~~~a~~il~~~~ 505 (541)
..++++..|..++++|.
T Consensus 118 ~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 118 KESKEVRASAKALVQKWT 135 (145)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 56789999999999874
No 176
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=37.19 E-value=2e+02 Score=24.78 Aligned_cols=140 Identities=10% Similarity=-0.030 Sum_probs=85.7
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhcC-ChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184 119 PRFVEFLLREDYPQLQFEAAWALTNIASG-TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL 196 (541)
Q Consensus 119 ~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (541)
..+..+..++. -+.+..|+.++...... .++. ++.+-.++.. ++-.+.+..+.+++.++...+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG---
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH---
Confidence 34455666666 78899898888876532 2221 2223334433 67788887666677765333320
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 009184 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (541)
Q Consensus 197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 276 (541)
..+.+...+ .+++.-+++.++-++...... ......++.+-.++.+++.-|+..+.|+|..++..+++
T Consensus 125 -----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~~------~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 125 -----LPTIFALFY-GAENFWNRRVALNLQLMLKEK------TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp -----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGGG------CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred -----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 123344445 778888888877644322111 11233456566677788888999999999999988776
Q ss_pred HHHHHHH
Q 009184 277 KIQAVIE 283 (541)
Q Consensus 277 ~~~~~~~ 283 (541)
....++.
T Consensus 193 ~v~~fl~ 199 (220)
T 2b6c_A 193 WVEELMK 199 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554443
No 177
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=33.90 E-value=1.8e+02 Score=23.30 Aligned_cols=75 Identities=11% Similarity=0.159 Sum_probs=53.9
Q ss_pred HHHHHHhCcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHH
Q 009184 278 IQAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACW 350 (541)
Q Consensus 278 ~~~~~~~g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~ 350 (541)
...+++.|++..+-..|.. ++..++...+.+|.++- -..+.+.++|+-..++.+-.++. .+..|+-|-.
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~ 129 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASAKA 129 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHH
Confidence 3567888999999888854 46789999999999884 22456778888887777776652 4567776666
Q ss_pred HHHHHh
Q 009184 351 TVSNIT 356 (541)
Q Consensus 351 ~L~nl~ 356 (541)
.+..-+
T Consensus 130 Li~~Ws 135 (145)
T 2xpp_A 130 LVQKWT 135 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 178
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=29.90 E-value=1.6e+02 Score=25.72 Aligned_cols=71 Identities=11% Similarity=0.085 Sum_probs=48.5
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (541)
Q Consensus 286 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (541)
..+.+...+.+++.-++..|+..+. ......... ..+..+...+.++ +.-|++...|+|..+...+++...
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l--~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQL--KYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTT--TCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHH--HHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHH
Confidence 4566777888888777777765542 222111111 1234455666777 899999999999999998888777
No 179
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=28.25 E-value=2.6e+02 Score=29.75 Aligned_cols=120 Identities=10% Similarity=0.046 Sum_probs=71.1
Q ss_pred hHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC--CChhhHHHHHHHHHH
Q 009184 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLS 227 (541)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~--~~~~~~~~~a~~~L~ 227 (541)
+.++.+++ -+.|.+...+.+.+..+...+..+|.++|.-.|.+++.++.. ++..+-.-|.. -..+.-...++.+|.
T Consensus 331 ~~~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~-vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 331 FCHEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDK-ILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHH-HHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHH-HHHHHHHHhccccccchhHHHHHHHHHH
Confidence 44455554 245666777888999999999999999998777555565432 44444444523 244555556666676
Q ss_pred hhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184 228 NFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (541)
Q Consensus 228 ~l~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 271 (541)
.+++--.. .-...+..++..++.-+..+|+.--..++..+..++
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 66643211 112233455555556666777765555555555443
No 180
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=27.54 E-value=3e+02 Score=23.85 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhcc-CChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHH-HHHhHhhcCCchhHHH
Q 009184 246 PALAHLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPAL-RTVGNIVTGDDMQTQC 322 (541)
Q Consensus 246 ~~L~~lL~~~d~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al-~~L~nl~~~~~~~~~~ 322 (541)
..+..+..++..+.+.-|+..+..... ..++ .++.+-.++ ..+++.+....+ .+++.+....+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 344555666666666666665543321 1121 122333333 346677766543 556665543332
Q ss_pred HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA 401 (541)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 401 (541)
...+.+...+.++ +.-+++.|+-.+..... .+.. ..++.+...+.+++.-|++.+
T Consensus 131 ----~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~-------------------~~~~~i~~~~~d~~~yV~kAv 186 (232)
T 3jxy_A 131 ----LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEE-------------------LLFWIIGQLHSSKEFFIQKAI 186 (232)
T ss_dssp ----GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHH-------------------HHHHHHHHHTTCCCHHHHHHH
T ss_pred ----HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHH-------------------HHHHHHHHhcCCHHHHHHHHH
Confidence 1345677888888 88888877655421111 1111 133455566778889999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHc
Q 009184 402 AWAISNATSGGTHEQIKFLVIQ 423 (541)
Q Consensus 402 ~~aL~nl~~~~~~~~~~~l~~~ 423 (541)
.|+|..+... +++....+++.
T Consensus 187 gW~Lr~~~k~-~p~~v~~fl~~ 207 (232)
T 3jxy_A 187 GWVLREYAKT-NPDVVWEYVQN 207 (232)
T ss_dssp HHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhh-CHHHHHHHHHH
Confidence 9999999886 55555544443
No 181
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=26.82 E-value=2.2e+02 Score=24.21 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhh--HHHHHHHHHHhh
Q 009184 158 HGAVPIFVKLLYS------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS--MLRNATWTLSNF 229 (541)
Q Consensus 158 ~g~i~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~--~~~~a~~~L~~l 229 (541)
...+|.+++++.+ .+.......+.....+..+..-.-+.-+.. .+|+++..+-...-.. ++..|+..+..+
T Consensus 39 ~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~-LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQ-ILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHH-HHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHh
Q 009184 230 CRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYL 270 (541)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l 270 (541)
|+............+...+.+.+.++ ......-|+++|..+
T Consensus 118 ~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 118 YDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
No 182
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=26.27 E-value=1e+02 Score=28.56 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=32.6
Q ss_pred hhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 470 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 470 ~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
...|.+.+.-..+..|..|++++|...|..|+..|-.
T Consensus 38 ~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~ 74 (309)
T 1pqv_S 38 EKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (309)
T ss_pred HHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5677888888889999999999999999999998764
No 183
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=24.60 E-value=8.1e+02 Score=27.76 Aligned_cols=228 Identities=15% Similarity=0.142 Sum_probs=113.9
Q ss_pred cCCHHHHHHhhc-CCCHHHHHHHHHHHHHHHccCCC--Cc-H---H-HHH----------hcC----CHHHHHHhhcCCC
Q 009184 72 LENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERS--PP-I---E-EVI----------RSG----VVPRFVEFLLRED 129 (541)
Q Consensus 72 ~~~l~~l~~~L~-s~~~~~~~~a~~~l~~l~~~~~~--~~-~---~-~~i----------~~g----~i~~Lv~lL~~~~ 129 (541)
.+.+|.++++|- +.++....+++..+|..+..... |. . + .+. +.| ....+++.+++.-
T Consensus 241 ~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l 320 (1323)
T 3s4w_B 241 LEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAI 320 (1323)
T ss_dssp TTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHH
Confidence 467899999664 54555567788888876654210 00 0 0 000 000 0111223332210
Q ss_pred --cHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHH-----------
Q 009184 130 --YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRD----------- 195 (541)
Q Consensus 130 --~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~----------- 195 (541)
...+...-+..+.++..... ...+..++-+ +.+.+...+..+-.++.+-+..+. +..
T Consensus 321 ~~~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~-it~~ll~~~f~~h~ 391 (1323)
T 3s4w_B 321 RYEKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDC-IQEQLLDSAFSTHY 391 (1323)
T ss_dssp HHCHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTC-SCHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCC-chHHHHHHHHHhhH
Confidence 13444444444555443211 1233333322 223344455666666666554332 111
Q ss_pred HHHhcCChHHHHHh---hcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184 196 LVLSQGGLVPLLAQ---LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (541)
Q Consensus 196 ~i~~~g~i~~Ll~~---l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 272 (541)
.++ ...++.++.+ +..+.++.++.-+......+..... ...-..++..|+..+-+....-...|+.+|..++.
T Consensus 392 ~vL-~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd---~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 392 LVL-KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD---TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp HHH-TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 111 2234444433 3467788888777776666665531 22335677777777666665556668888888886
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (541)
Q Consensus 273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 314 (541)
..+....... -.+..++..+.+-+..-......+|+.++.
T Consensus 468 ~~~~~l~~~a--~~l~giLD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 468 LNASAMRLNA--AFVKGILDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp HCHHHHHHTH--HHHHGGGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHhHHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Confidence 5554332211 234444555555554445556777777765
No 184
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=23.99 E-value=4.3e+02 Score=24.40 Aligned_cols=184 Identities=11% Similarity=0.095 Sum_probs=94.8
Q ss_pred hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh----cCC----CchhHHHHHHHHHHHHhcCChHHHHHHHhhch
Q 009184 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL----SGN----YKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371 (541)
Q Consensus 300 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 371 (541)
.+++..++.+.......+.. + .+....+|.|+..+ +.. .++++-.-...++..+...-.+.+.
T Consensus 44 ~vKkeiLkLiet~i~~~~d~-~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp------- 114 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDP-Q-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIP------- 114 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCH-H-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHH-------
T ss_pred HHHHHHHHHHHHHHHcCCCH-H-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHH-------
Confidence 35666666666666544322 1 22234566665422 112 1334433333333333332222232
Q ss_pred hhHHHHHhcCcHHHHHHHhhc---CchhHHHHHHHHHHHhccCC-------CHHHHHHHHHcCChHHHhhhcCCCChHHH
Q 009184 372 FSIIAVIEANIIGPLVALLEN---AEFDIKKEAAWAISNATSGG-------THEQIKFLVIQGCIKPLCDLLVCPDPRIV 441 (541)
Q Consensus 372 ~~~~~l~~~~~l~~L~~~l~~---~~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 441 (541)
.+.+ .+++.-++++.. +-|+.|.+=...|.++...+ .+++.+. +++.++--.++.++++.
T Consensus 115 ----~Il~-~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~ 184 (321)
T 1w9c_A 115 ----QIFD-AVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVA 184 (321)
T ss_dssp ----HHHH-HHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHH
T ss_pred ----HHHH-HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHH
Confidence 2333 455666666664 34777777666666655432 3343333 46677777889999999
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184 442 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 506 (541)
Q Consensus 442 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~ 506 (541)
...|.++..++..-.+... -.+.|...+--.=..+.+.-++.+...--...-..||...|.
T Consensus 185 e~gL~il~~ll~n~~~~~~----~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 185 DTGLQILFTLLQNVAQEEA----AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 9999999888875543111 122222222211112333444555555555666677777774
No 185
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=21.50 E-value=1.6e+02 Score=23.81 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=46.8
Q ss_pred ChHHHhhhcCC-CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHH-HHHHhc---CCCHHHHHHHHH
Q 009184 425 CIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQT---HDNAEIYEKSVK 499 (541)
Q Consensus 425 ~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l~~L~~---~~~~~i~~~a~~ 499 (541)
++..|..-|.. .++.++..+|..|..+++.+... |...+....+++. |..+.. +...+|+++...
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~----------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~ 123 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS----------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILN 123 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH----------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH----------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 45556555653 57777778888888888754332 3444444444442 444432 356789999999
Q ss_pred HHHHhCCC
Q 009184 500 LLETYWLD 507 (541)
Q Consensus 500 il~~~~~~ 507 (541)
+|..+-..
T Consensus 124 li~~Wa~~ 131 (152)
T 3rru_A 124 FIKTWSQG 131 (152)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 99998654
No 186
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=20.79 E-value=93 Score=21.35 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 009184 492 EIYEKSVKLLETYWLDDED 510 (541)
Q Consensus 492 ~i~~~a~~il~~~~~~~~~ 510 (541)
+|++.+..-+++||+++++
T Consensus 51 ~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 51 DIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHhCccccC
Confidence 6788999999999987554
Done!