Your job contains 1 sequence.
>009187
MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ
SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA
SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH
KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI
IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISE
GLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCT
TQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMN
REYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE
AKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVCLYSISICLYDLDFSCFTPS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009187
(540 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083579 - symbol:AT3G09360 species:3702 "Arabi... 1169 9.8e-119 1
TAIR|locus:2055600 - symbol:AT2G45100 species:3702 "Arabi... 738 5.0e-106 4
POMBASE|SPBC13E7.10c - symbol:brf1 "transcription factor ... 328 2.1e-40 3
SGD|S000003478 - symbol:BRF1 "TFIIIB B-related factor" sp... 350 3.1e-40 3
UNIPROTKB|F1NQ85 - symbol:BRF1 "Uncharacterized protein" ... 337 4.7e-40 3
MGI|MGI:1919558 - symbol:Brf1 "BRF1 homolog, subunit of R... 326 7.9e-40 3
DICTYBASE|DDB_G0281215 - symbol:brf1 "transcription facto... 383 1.2e-39 2
ZFIN|ZDB-GENE-030131-6334 - symbol:brf1a "BRF1 homolog, s... 337 3.2e-39 3
UNIPROTKB|Q92994 - symbol:BRF1 "Transcription factor IIIB... 330 9.0e-39 3
ZFIN|ZDB-GENE-030131-6248 - symbol:brf1b "BRF1 homolog, s... 335 5.6e-37 3
FB|FBgn0038499 - symbol:Brf "Brf" species:7227 "Drosophil... 296 3.3e-36 4
UNIPROTKB|F1PRK4 - symbol:BRF1 "Uncharacterized protein" ... 293 1.4e-33 3
UNIPROTKB|J9PB52 - symbol:BRF1 "Uncharacterized protein" ... 272 3.2e-31 3
CGD|CAL0004048 - symbol:BRF1 species:5476 "Candida albica... 317 4.3e-30 3
UNIPROTKB|P43072 - symbol:TDS4 "Transcription factor IIIB... 317 4.3e-30 3
UNIPROTKB|G3X7R9 - symbol:G3X7R9 "Uncharacterized protein... 259 7.5e-30 4
RGD|1311158 - symbol:Brf1 "BRF1 homolog, subunit of RNA p... 192 2.5e-27 4
ASPGD|ASPL0000037776 - symbol:AN3116 species:162425 "Emer... 268 2.6e-27 4
WB|WBGene00000271 - symbol:brf-1 species:6239 "Caenorhabd... 316 2.6e-27 2
TAIR|locus:4515102612 - symbol:AT1G30455 species:3702 "Ar... 215 3.8e-21 2
UNIPROTKB|H0YIV6 - symbol:BRF1 "Transcription factor IIIB... 148 6.4e-13 2
UNIPROTKB|F8VWT8 - symbol:BRF1 "Transcription factor IIIB... 125 1.9e-10 2
UNIPROTKB|Q3SYD7 - symbol:BRF1 "Transcription factor IIIB... 125 1.9e-10 2
UNIPROTKB|I3LCQ3 - symbol:BRF1 "Uncharacterized protein" ... 125 7.7e-10 2
UNIPROTKB|F8VXJ4 - symbol:BRF1 "Transcription factor IIIB... 146 2.2e-09 1
UNIPROTKB|A3KN61 - symbol:BRF1 "Transcription factor IIIB... 125 3.2e-08 2
UNIPROTKB|F8VS45 - symbol:BRF1 "Transcription factor IIIB... 125 4.1e-07 2
UNIPROTKB|F8VWY1 - symbol:BRF1 "Transcription factor IIIB... 121 1.1e-06 1
UNIPROTKB|F8VQ19 - symbol:BRF1 "Transcription factor IIIB... 102 1.7e-06 2
UNIPROTKB|F2Z5J6 - symbol:GTF2B "Uncharacterized protein"... 130 1.6e-05 1
UNIPROTKB|F1NXP2 - symbol:GTF2B "Uncharacterized protein"... 129 2.0e-05 1
UNIPROTKB|F2Z4J6 - symbol:LOC786656 "Uncharacterized prot... 128 2.7e-05 1
UNIPROTKB|E2RPG1 - symbol:GTF2B "Uncharacterized protein"... 128 2.7e-05 1
UNIPROTKB|Q00403 - symbol:GTF2B "Transcription initiation... 128 2.7e-05 1
MGI|MGI:2385191 - symbol:Gtf2b "general transcription fac... 128 2.7e-05 1
RGD|619735 - symbol:Gtf2b "general transcription factor I... 128 2.7e-05 1
WB|WBGene00006648 - symbol:ttb-1 species:6239 "Caenorhabd... 126 4.3e-05 1
UNIPROTKB|Q2KIN8 - symbol:GTF2B "Transcription initiation... 126 4.6e-05 1
ZFIN|ZDB-GENE-030131-3544 - symbol:gtf2b "general transcr... 124 7.6e-05 1
TAIR|locus:2076259 - symbol:AT3G10330 species:3702 "Arabi... 99 0.00011 2
>TAIR|locus:2083579 [details] [associations]
symbol:AT3G09360 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0010440 "stomatal lineage
progression" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000812 InterPro:IPR011665
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045893
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
KO:K15196 OMA:YGCDGDE EMBL:AK226688 IPI:IPI00523177
RefSeq:NP_187547.2 UniGene:At.53231 ProteinModelPortal:Q0WVQ3
STRING:Q0WVQ3 EnsemblPlants:AT3G09360.1 GeneID:820092
KEGG:ath:AT3G09360 TAIR:At3g09360 HOGENOM:HOG000265442
InParanoid:Q0WVQ3 PhylomeDB:Q0WVQ3 ProtClustDB:CLSN2681133
Genevestigator:Q0WVQ3 Uniprot:Q0WVQ3
Length = 604
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 255/541 (47%), Positives = 330/541 (60%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ +FSTE TFVKNAAGQSQ SGN VR++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D++ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQ
Sbjct: 61 SGITSSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + LLIDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFM 180
Query: 180 HKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct: 181 DRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 239 DII------EDFMARKK-ELHEGVAANLPNNGPK-------------VSGMNEVLCKHKD 278
DI+ E + ++ E + + NL N + S VLC H+D
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTDSGNLNVNELRERESHKRSFTMKPTSNKEAVLCMHQD 300
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 338
+ KPF GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN E
Sbjct: 301 S-KPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREEN-----EGGISS 354
Query: 339 MSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 398
++ +++ S K C S +GE D G + + SD SDNFSDI D E
Sbjct: 355 LNHDEQLYSDYCSMSKRGKQC-----SEKGEKDKD---GAEEHADTSDESDNFSDISDDE 406
Query: 399 VDGYLHNEEEKHYKKIIWEEMNREYXXXXXXXXXXXXXXXXXXXXSYKNCPEGXXXXXXX 458
V+GY++NEEE HYK I W EMN++Y S NCPE
Sbjct: 407 VNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPEDARKAFEA 466
Query: 459 XXXXXXXXXKSXXXXXXXXXXXXXNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
KS N+ P TA+EA RR L KKRLSS INYDVLE LFD
Sbjct: 467 AKADAA---KSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDT 523
Query: 519 S 519
S
Sbjct: 524 S 524
>TAIR|locus:2055600 [details] [associations]
symbol:AT2G45100 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010440 "stomatal
lineage progression" evidence=RCA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
GO:GO:0005634 GO:GO:0045893 EMBL:CP002685 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K15196 IPI:IPI00532450
RefSeq:NP_182035.2 UniGene:At.50139 ProteinModelPortal:F4IW19
SMR:F4IW19 PRIDE:F4IW19 EnsemblPlants:AT2G45100.1 GeneID:819117
KEGG:ath:AT2G45100 OMA:LYITENH Uniprot:F4IW19
Length = 557
Score = 738 (264.8 bits), Expect = 5.0e-106, Sum P(4) = 5.0e-106
Identities = 138/243 (56%), Positives = 184/243 (75%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC C ++V G RPYD+ L CD CG++LE+ NFSTE TFVKNAAGQSQ SGN ++++Q
Sbjct: 1 MVWCKHCGKNVPGIRPYDAALSCDLCGRILENFNFSTEVTFVKNAAGQSQASGNILKSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER++ KA D++ +++AL IG+ D+++ +A F+ IA+ NFTKGR E V
Sbjct: 61 SGMSSSRERIIRKATDELMNLRDALGIGDDRDDVIVMASNFFRIALDHNFTKGRSKELVF 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL CRQ LLIDFS+YL ++VY+LG+VYLQLC +LYI + N K VDPSIF+
Sbjct: 121 SSCLYLTCRQFKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G N K+ TA I+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct: 181 PRFSNMLLKGAHNNKLVLTATHIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 239 DII 241
DI+
Sbjct: 241 DIV 243
Score = 210 (79.0 bits), Expect = 5.0e-106, Sum P(4) = 5.0e-106
Identities = 56/130 (43%), Positives = 72/130 (55%)
Query: 219 LCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 278
+C A L + G + + D ++ K E + AA P VLC H+D
Sbjct: 248 ICEATLTKRLIEFG-DTEAASLTADELS-KTEREKETAALRSKRKPNFYKEGVVLCMHQD 305
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV-KASAEENS---SFERES 334
KP GLC SCY+EFMT+S GLEGG+DPPAFQ AE+ERM KAS+EEN + + S
Sbjct: 306 C-KPVDYGLCESCYDEFMTVSGGLEGGSDPPAFQRAEKERMEEKASSEENDKQVNLDGHS 364
Query: 335 D-SPFMSRVD 343
D S +S VD
Sbjct: 365 DESSTLSDVD 374
Score = 73 (30.8 bits), Expect = 5.0e-106, Sum P(4) = 5.0e-106
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 385 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 423
SD S SD+DD E+D Y EE KI ++ N Y
Sbjct: 364 SDESSTLSDVDDRELDCYFRTPEEVRLVKIFFDHENPGY 402
Score = 72 (30.4 bits), Expect = 5.0e-106, Sum P(4) = 5.0e-106
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 483 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 520
N+ P T +EA M+ +K+ IN D LE+LFD SV
Sbjct: 448 NAPPPATGIEAVDSMVKRKKFRD-INCDYLEELFDASV 484
>POMBASE|SPBC13E7.10c [details] [associations]
symbol:brf1 "transcription factor TFIIIB complex
subunit Brf1" species:4896 "Schizosaccharomyces pombe" [GO:0000126
"transcription factor TFIIIB complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006384 "transcription initiation from
RNA polymerase III promoter" evidence=TAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPBC13E7.10c GO:GO:0045893 GO:GO:0046872
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 GO:GO:0006384
GO:GO:0000126 HOGENOM:HOG000198688 PIR:T40176 RefSeq:NP_596265.2
STRING:Q9P6R0 EnsemblFungi:SPBC13E7.10c.1 GeneID:2540071
OrthoDB:EOG40P7GP NextBio:20801208 Uniprot:Q9P6R0
Length = 492
Score = 328 (120.5 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 79/249 (31%), Positives = 130/249 (52%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C +C C +CG V+E +E TF + + G + + G+ V
Sbjct: 3 CPNCGSTTFESDTASGNTYCTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQTHA 62
Query: 57 RTIQSEY---GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
RT Y G+ R + A R A+ + ++ + A R++ +A+ NF KGR
Sbjct: 63 RTFGGPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGR 122
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
R++ V ASCLY+ CR +LIDFS+ L INV++LG+ +L+LC+VL N L +
Sbjct: 123 RSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVL----RPN-LPLL 177
Query: 174 DPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
DPS+++ +F L G +V + A ++A M RDW+ GR+P+G+CGA L ++A +
Sbjct: 178 DPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAARMNN 237
Query: 233 LKFSKSDII 241
+ S +++
Sbjct: 238 FRRSVREVV 246
Score = 97 (39.2 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 32/138 (23%), Positives = 60/138 (43%)
Query: 302 LEGGADPPAFQVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQ 346
LEG +DPP+F ++ + A N +E SP +S+ KV+
Sbjct: 281 LEGQSDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVE 340
Query: 347 SPE-PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHN 405
S E P + + + + +GD + + + S+ D+DD E++ L +
Sbjct: 341 SQETPVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLD 400
Query: 406 EEEKHYKKIIWEEMNREY 423
++E K +W E+N++Y
Sbjct: 401 KDEILTKTQVWMELNKDY 418
Score = 83 (34.3 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 483 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
+ G A TA E+ + M+ ++ S KINY+ L+ LFD+
Sbjct: 454 SDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489
>SGD|S000003478 [details] [associations]
symbol:BRF1 "TFIIIB B-related factor" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0070893
"transposon integration" evidence=IDA] [GO:0090074 "negative
regulation of protein homodimerization activity" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0001026 "TFIIIB-type transcription factor
activity" evidence=IC] [GO:0000994 "RNA polymerase III core
binding" evidence=IDA;IPI] [GO:0001156 "TFIIIC-class transcription
factor binding" evidence=IDA;IPI] [GO:0001112 "DNA-dependent
transcriptional open complex formation" evidence=IMP] [GO:0070898
"RNA polymerase III transcriptional preinitiation complex assembly"
evidence=IMP;IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0000126 "transcription factor TFIIIB complex" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 SGD:S000003478 GO:GO:0045893 EMBL:BK006941
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:Y07703 Reactome:REACT_83470
GO:GO:0090074 GO:GO:0000994 GO:GO:0001156 GO:GO:0070898
Reactome:REACT_87991 GO:GO:0000126 PDB:1NGM PDBsum:1NGM
GO:GO:0001026 GO:GO:0070893 InterPro:IPR023486 KO:K15196
HOGENOM:HOG000198688 OrthoDB:EOG40P7GP EMBL:M91073 EMBL:L00630
EMBL:Z73031 PIR:A44072 RefSeq:NP_011762.1 ProteinModelPortal:P29056
SMR:P29056 DIP:DIP-191N IntAct:P29056 MINT:MINT-2783113
STRING:P29056 PaxDb:P29056 PeptideAtlas:P29056 EnsemblFungi:YGR246C
GeneID:853161 KEGG:sce:YGR246C CYGD:YGR246c
GeneTree:ENSGT00390000010349 OMA:CRKERTH EvolutionaryTrace:P29056
NextBio:973264 Genevestigator:P29056 GermOnline:YGR246C
GO:GO:0001112 Uniprot:P29056
Length = 596
Score = 350 (128.3 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 80/232 (34%), Positives = 135/232 (58%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 191 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
K KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 89 (36.4 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 423
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADF 494
Score = 66 (28.3 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 484 SGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
SG TA ++ + ML K S KINYD ++ LF
Sbjct: 564 SGDFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>UNIPROTKB|F1NQ85 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AADN02003843 EMBL:AADN02003838
EMBL:AADN02003839 EMBL:AADN02003840 EMBL:AADN02003841
EMBL:AADN02003842 IPI:IPI00588765 Ensembl:ENSGALT00000019132
Uniprot:F1NQ85
Length = 593
Score = 337 (123.7 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 83/233 (35%), Positives = 126/233 (54%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + A SR +
Sbjct: 23 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHANLGKESRAQ 82
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 83 TLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRT 140
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I N +DP +++ +F L G
Sbjct: 141 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFAHMLEFG 195
Query: 190 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 196 DKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 248
Score = 98 (39.6 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 48/198 (24%), Positives = 85/198 (42%)
Query: 233 LKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 292
L+ + S +EDF + + L N+ PK G+ L K D+ + S +
Sbjct: 304 LEKALSKKLEDFEGEISSYQDEIEIELENSRPKAKGVFANLSK-SDSIEDNTL----SIF 358
Query: 293 EEFMTISEGLEGGADP--PAF--QVAERERMVKASAEENSSFERESDSPFMS-RVDKVQS 347
E E LE A+ F ++ E++R+ E+ + +++P ++ +
Sbjct: 359 GEEEAEDEELEAAANHLNKDFCNELLEKDRLKPG---EDGDCKNGNEAPVRPPALESLLG 415
Query: 348 PEPE--SIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHN 405
P P S+G+ ++ +S + E PG + DG + S IDD E+D Y+ N
Sbjct: 416 PLPTAASLGITESIKECISSKDRE------PGENT----GDGELDLSGIDDSEIDRYILN 465
Query: 406 EEEKHYKKIIWEEMNREY 423
E E K +W + N +Y
Sbjct: 466 ETEAQIKAELWMKENADY 483
Score = 79 (32.9 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY+VL L
Sbjct: 520 ASTAGEAIEKMLEQKKISSKINYNVLRDL 548
Score = 67 (28.6 bits), Expect = 7.9e-37, Sum P(3) = 7.9e-37
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 293 EEFMTISEGLEGGADPPAFQVAER----ERMVKASAEENSSFERESDSPFMSRVD-KVQS 347
+EFM I LE DPP+F ++ +++ KA +++ FE E S + ++ ++++
Sbjct: 276 DEFMRID--LEEECDPPSFTAGQKKLKIQQLEKALSKKLEDFEGEISS-YQDEIEIELEN 332
Query: 348 PEPESIGVPKN 358
P++ GV N
Sbjct: 333 SRPKAKGVFAN 343
>MGI|MGI:1919558 [details] [associations]
symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
transcription initiation factor IIIB (S. cerevisiae)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 MGI:MGI:1919558 GO:GO:0005634 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 HOVERGEN:HBG023540
OrthoDB:EOG4NGGMJ EMBL:BC037224 IPI:IPI00319141 UniGene:Mm.196721
ProteinModelPortal:Q8CFK2 SMR:Q8CFK2 STRING:Q8CFK2
PhosphoSite:Q8CFK2 PRIDE:Q8CFK2 UCSC:uc007pfn.1
HOGENOM:HOG000198688 InParanoid:Q8CFK2 Genevestigator:Q8CFK2
GermOnline:ENSMUSG00000011158 Uniprot:Q8CFK2
Length = 676
Score = 326 (119.8 bits), Expect = 7.9e-40, Sum P(3) = 7.9e-40
Identities = 82/234 (35%), Positives = 126/234 (53%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I N +DP +++ +F LL
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEF 196
Query: 190 GNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 197 GEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 250
Score = 119 (46.9 bits), Expect = 7.9e-40, Sum P(3) = 7.9e-40
Identities = 42/183 (22%), Positives = 72/183 (39%)
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
R K+L + ++ L ++S + + + +P A G + ++ G + +
Sbjct: 302 RMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLSKD----GSGEDATS 357
Query: 307 DPPAFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSPEP---ESIGVPKNCT 360
P + E E + A++ N F RE D + D P ES+ P
Sbjct: 358 SPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAAGDPDGGSRPLALESLLGPLPTA 417
Query: 361 TQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMN 420
++ + +P D + DG + S IDD E+D Y+ NE E K +W N
Sbjct: 418 ASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMREN 477
Query: 421 REY 423
EY
Sbjct: 478 AEY 480
Score = 78 (32.5 bits), Expect = 7.9e-40, Sum P(3) = 7.9e-40
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY VL L
Sbjct: 517 ASTAGEAIEKMLEQKKISSKINYSVLRDL 545
Score = 69 (29.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES 352
+EFM I LE DPP++ +R+ +K + S E + S D ++ S
Sbjct: 278 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENS 335
Query: 353 IGVPKNCTTQTASNEGEG-DHTKTPGVDATTE 383
K S +G G D T +P + TE
Sbjct: 336 RPKAKGALANL-SKDGSGEDATSSPRCEEDTE 366
Score = 52 (23.4 bits), Expect = 7.3e-33, Sum P(3) = 7.3e-33
Identities = 19/77 (24%), Positives = 31/77 (40%)
Query: 236 SKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG----KPFACGLCRSC 291
S D IE + + +G ANL +G + C+ +DT + A + +
Sbjct: 323 SYQDAIEIELENSRPKAKGALANLSKDGSGEDATSSPRCE-EDTEDEELEAAASHMNKDF 381
Query: 292 YEEFMTISEGLEGGADP 308
Y E + +G E DP
Sbjct: 382 YRELLGDDDGSEAAGDP 398
>DICTYBASE|DDB_G0281215 [details] [associations]
symbol:brf1 "transcription factor IIIB subunit"
species:44689 "Dictyostelium discoideum" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;IC] [GO:0000126 "transcription factor TFIIIB
complex" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006384 "transcription
initiation from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685 dictyBase:DDB_G0281215
GO:GO:0045893 GenomeReviews:CM000152_GR EMBL:AAFI02000040
GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 InterPro:IPR021752
Pfam:PF11781 GO:GO:0006384 GO:GO:0000126 KO:K15196
RefSeq:XP_640891.1 ProteinModelPortal:Q54U85 STRING:Q54U85
EnsemblProtists:DDB0231089 GeneID:8622948 KEGG:ddi:DDB_G0281215
InParanoid:Q54U85 OMA:CASENSQ Uniprot:Q54U85
Length = 706
Score = 383 (139.9 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 92/246 (37%), Positives = 133/246 (54%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--S 61
C +C + + C CG V E N +E F G S + G FV + S
Sbjct: 5 CGNCGNDSFASSN-EGSVVCTACGTVKESANIVSEVQF----GGDSSIVGTFVSATRKPS 59
Query: 62 EYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
Y + SR +E A + Q+ N+L I ++ A+R + +A+ NFTKGR+T
Sbjct: 60 SYRSLGGRDSRAMSVENARKKLDQIGNSLRI--RSHLIDSAQRTFELAMENNFTKGRQTR 117
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V A+CLY+ CR++ P LLIDFS L +NV+ + +LQL ++L I L VDPS
Sbjct: 118 LVAAACLYIVCRRERTPHLLIDFSENLQVNVFIVAGTFLQLIKLLNIQ-----LPIVDPS 172
Query: 177 IFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
F+ +F L G K V TA ++A MKRDW++ GRKPSG+CGA+LY+++ HG K
Sbjct: 173 FFIQRFASALEFGDQTKDVIATANKLVARMKRDWMSIGRKPSGICGASLYIASKIHGFKR 232
Query: 236 SKSDII 241
S +I+
Sbjct: 233 SMKEIV 238
Score = 70 (29.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 376 PGVDATTEAS--DGSDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREY 423
P + +T + S +D ++ D E+D YL H+++ K+ IW E+N+E+
Sbjct: 520 PTITSTIDQSVFAPNDELENLSDEELDFYLEHDKDTVKKKEEIWVELNKEW 570
Score = 45 (20.9 bits), Expect = 5.2e-37, Sum P(2) = 5.2e-37
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 341 RVDKVQSPEPESIGVPKNCTTQ---TASNEGEGDHTKTPGVDATTEASDGSDN 390
++ + QS EP++ P + TT T + + + + P +D T + D+
Sbjct: 464 KIKESQSQEPDTTPPPSSTTTTQTTTTTTTSQNNESSAP-IDLPTPINKTMDS 515
>ZFIN|ZDB-GENE-030131-6334 [details] [associations]
symbol:brf1a "BRF1 homolog, subunit of RNA
polymerase III transcription initiation factor IIIBa" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6334
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0003743 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 KO:K15196
HOVERGEN:HBG023540 OrthoDB:EOG4NGGMJ HOGENOM:HOG000198688
HSSP:P61999 EMBL:BC046877 IPI:IPI00488634 RefSeq:NP_956192.1
UniGene:Dr.20342 ProteinModelPortal:Q802Z8 GeneID:334402
KEGG:dre:334402 CTD:334402 InParanoid:Q802Z8 NextBio:20810386
Uniprot:Q802Z8
Length = 661
Score = 337 (123.7 bits), Expect = 3.2e-39, Sum P(3) = 3.2e-39
Identities = 85/234 (36%), Positives = 128/234 (54%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------------TIQSEYGA-SRER 69
C CG VLED+ +E TFV++ G S G FV Q+ G SR
Sbjct: 23 CMGCGSVLEDNIIVSEVTFVESGGGGSSAVGQFVAGDASGNVPSLGGNFQTSVGRESRAA 82
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ A + + + L + + + A FY +A++++ TKGR++ V A+CLYL CR
Sbjct: 83 TLQNAKRQINHLGHQLQMNQ--HCLDTAFNFYKMALSKHLTKGRKSTHVIAACLYLVCRT 140
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I N +DP +++ +F +LL
Sbjct: 141 EGTPHMLLDLSDLLQVNVYVLGKTFLVLARELCI----NA-PAIDPCLYIPRFA-QLLEF 194
Query: 190 GNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 195 GEKSHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTIKEVI 248
Score = 89 (36.4 bits), Expect = 3.2e-39, Sum P(3) = 3.2e-39
Identities = 40/178 (22%), Positives = 74/178 (41%)
Query: 249 KELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
K++ + +A + + ++ G + + ++ +P A G+ SC E +S D
Sbjct: 302 KQIEQELAKKVDDIEGEICGYQDEIEVELESCRPKARGIYASCSREDDVVSLASSSHLDG 361
Query: 309 PAFQV-AERERMVKASAEENSSFERES--DSPFMSRVDKVQSPEPESIGVPKNCTTQTAS 365
++ A + + E+ ER S P +S + P S+G+ ++ T
Sbjct: 362 EDDELRAAASHLYGENEEQEQDGERVSLTKRPSLSLLLGAL-PTSASLGLSESITKM--G 418
Query: 366 NEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 423
E E D EA G + S ID+ E+D Y+ N++E K +W N +Y
Sbjct: 419 EEKEND----------VEAEGGELDLSGIDEDEIDRYILNDKEVKVKTELWMIQNADY 466
Score = 85 (35.0 bits), Expect = 3.2e-39, Sum P(3) = 3.2e-39
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +KR+S+KINYDVL+ L
Sbjct: 503 ANTADEAIEKMLEQKRISTKINYDVLKDL 531
Score = 60 (26.2 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
Identities = 26/114 (22%), Positives = 49/114 (42%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ----SP 348
EEFM LE DPP+F R++ +K +E + + + D+++ S
Sbjct: 276 EEFMKTD--LEQECDPPSFAAGLRKQKLKQIEQELAKKVDDIEGEICGYQDEIEVELESC 333
Query: 349 EPESIGVPKNCTTQT-ASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG 401
P++ G+ +C+ + + H G D A+ S + + ++ E DG
Sbjct: 334 RPKARGIYASCSREDDVVSLASSSHLD--GEDDELRAA-ASHLYGENEEQEQDG 384
>UNIPROTKB|Q92994 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000126 "transcription factor TFIIIB complex"
evidence=NAS] [GO:0006384 "transcription initiation from RNA
polymerase III promoter" evidence=TAS] [GO:0009303 "rRNA
transcription" evidence=TAS] [GO:0009304 "tRNA transcription"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893
EMBL:CH471061 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0009303 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 Reactome:REACT_1788 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL512355 GO:GO:0006384
GO:GO:0000126 KO:K15196 EMBL:U28838 EMBL:U75276 EMBL:AJ297406
EMBL:AJ297407 EMBL:AJ297408 EMBL:AK096471 EMBL:AK294899
EMBL:AK295579 EMBL:BC016743 EMBL:BC071637 EMBL:BC086856
EMBL:BC103859 IPI:IPI00016859 IPI:IPI00157643 IPI:IPI00216075
IPI:IPI00334140 IPI:IPI00607889 IPI:IPI01011010 IPI:IPI01012378
PIR:I39065 RefSeq:NP_001229715.1 RefSeq:NP_001229716.1
RefSeq:NP_001229717.1 RefSeq:NP_001229718.1 RefSeq:NP_001229719.1
RefSeq:NP_001510.2 RefSeq:NP_663718.1 UniGene:Hs.424484
ProteinModelPortal:Q92994 SMR:Q92994 IntAct:Q92994
MINT:MINT-2859415 STRING:Q92994 PhosphoSite:Q92994 DMDM:20455319
PaxDb:Q92994 PRIDE:Q92994 Ensembl:ENST00000327359
Ensembl:ENST00000379937 Ensembl:ENST00000392557
Ensembl:ENST00000440513 Ensembl:ENST00000446501
Ensembl:ENST00000546474 Ensembl:ENST00000548421 GeneID:2972
KEGG:hsa:2972 UCSC:uc001yql.2 UCSC:uc010axg.1 CTD:2972
GeneCards:GC14M105675 HGNC:HGNC:11551 MIM:604902 neXtProt:NX_Q92994
PharmGKB:PA164741296 HOVERGEN:HBG023540 InParanoid:Q92994
OMA:YGCDGDE OrthoDB:EOG4NGGMJ PhylomeDB:Q92994 ChiTaRS:BRF1
GenomeRNAi:2972 NextBio:11787 ArrayExpress:Q92994 Bgee:Q92994
CleanEx:HS_BRF1 Genevestigator:Q92994 GermOnline:ENSG00000185024
GO:GO:0009304 Uniprot:Q92994
Length = 677
Score = 330 (121.2 bits), Expect = 9.0e-39, Sum P(3) = 9.0e-39
Identities = 83/234 (35%), Positives = 126/234 (53%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+++ G S G FV T+ + SR +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I N +DP +++ +F LL
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEF 196
Query: 190 GNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 197 GEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 250
Score = 102 (41.0 bits), Expect = 9.0e-39, Sum P(3) = 9.0e-39
Identities = 46/187 (24%), Positives = 75/187 (40%)
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEG 304
R K+L + ++ L ++S + + + +P A G S ++ T + L G
Sbjct: 302 RMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG 361
Query: 305 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCT 360
D E E + A++ N RE + SPE P ++G +
Sbjct: 362 EED------TEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-P 414
Query: 361 TQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIW 416
TA++ G D + + D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 415 LPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELW 474
Query: 417 EEMNREY 423
N EY
Sbjct: 475 MRENAEY 481
Score = 79 (32.9 bits), Expect = 9.0e-39, Sum P(3) = 9.0e-39
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY VL L
Sbjct: 518 ASTAREAIEKMLEQKKISSKINYSVLRGL 546
Score = 55 (24.4 bits), Expect = 6.9e-34, Sum P(3) = 6.9e-34
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERE-RMVKASAEENSSFER-ESD-SPFMSRVD-KVQSP 348
+EFM I LE DPP++ +R+ RM + + E E + S + ++ ++++
Sbjct: 278 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENS 335
Query: 349 EPESIG----VPKNCTTQ-TASNE-GEGD 371
P++ G + K+ +T+ TAS+ GE D
Sbjct: 336 RPKAKGGLASLAKDGSTEDTASSLCGEED 364
>ZFIN|ZDB-GENE-030131-6248 [details] [associations]
symbol:brf1b "BRF1 homolog, subunit of RNA
polymerase III transcription initiation factor IIIBb" species:7955
"Danio rerio" [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6248
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 KO:K15196 HOVERGEN:HBG023540 HSSP:P61999
EMBL:BC060523 IPI:IPI00500469 RefSeq:NP_956183.1 UniGene:Dr.7329
ProteinModelPortal:Q6P9Z3 STRING:Q6P9Z3 GeneID:334316
KEGG:dre:334316 CTD:334316 InParanoid:Q6P9Z3 NextBio:20810348
Uniprot:Q6P9Z3
Length = 693
Score = 335 (123.0 bits), Expect = 5.6e-37, Sum P(3) = 5.6e-37
Identities = 86/251 (34%), Positives = 129/251 (51%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C +C P C CG VLED+ +E FV+N+ G S G FV
Sbjct: 5 CKNCGGSDIDTDPARGSAVCTACGSVLEDNIIVSEVQFVENSGGVSSAVGQFVSADGTSK 64
Query: 59 ---IQSEYGAS--RERLMEKAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ S + S +E + + RQ+ N + + + A F+ + V+++ T+G
Sbjct: 65 APVLGSGFHTSLGKESRAQTLQNGKRQIHNLGSQLQLNQHCLDTAFNFFKMVVSKHLTRG 124
Query: 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ 172
R+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I N
Sbjct: 125 RKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCI----NA-PA 179
Query: 173 VDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 180 VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARM 238
Query: 231 HGLKFSKSDII 241
H + + ++I
Sbjct: 239 HEFRRTVKEVI 249
Score = 84 (34.6 bits), Expect = 5.6e-37, Sum P(3) = 5.6e-37
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINYDVL L
Sbjct: 524 ASTAGEAIEKMLEQKKISSKINYDVLRDL 552
Score = 73 (30.8 bits), Expect = 5.6e-37, Sum P(3) = 5.6e-37
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 373 TKTPGVDATTEASDGSD-NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 423
T+T V+ E SD + + ID+ E++ Y+ NE E K +W + N EY
Sbjct: 440 TETTNVE---EKSDSGELDLDGIDEEEIEKYILNEIEVEAKTELWMKQNEEY 488
Score = 50 (22.7 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 19/94 (20%), Positives = 38/94 (40%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES 352
+EFM + LE DPP+F +++ ++ +E E S D++++ S
Sbjct: 277 DEFMRVD--LEKECDPPSFVAGQKKVKMQQLEQELVKKLEEYQGEIDSYRDEIETQLAGS 334
Query: 353 IGVPKNCTTQTASNEGEGDHTKTPGVDATTEASD 386
+ + E + + T G+ +A D
Sbjct: 335 SRTKMKGIYASYAREDDDSLSVTSGLTGDEDAED 368
>FB|FBgn0038499 [details] [associations]
symbol:Brf "Brf" species:7227 "Drosophila melanogaster"
[GO:0006359 "regulation of transcription from RNA polymerase III
promoter" evidence=ISS;IDA;IPI] [GO:0000126 "transcription factor
TFIIIB complex" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IDA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=IPI] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0006383 GO:GO:0006359 eggNOG:COG1405
PANTHER:PTHR11618 EMBL:AF262374 HSSP:P61999
ProteinModelPortal:Q9NB72 SMR:Q9NB72 STRING:Q9NB72 PaxDb:Q9NB72
PRIDE:Q9NB72 FlyBase:FBgn0038499 InParanoid:Q9NB72
OrthoDB:EOG4SJ3VV ArrayExpress:Q9NB72 Bgee:Q9NB72 Uniprot:Q9NB72
Length = 662
Score = 296 (109.3 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 85/277 (30%), Positives = 133/277 (48%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C + C CG VLED +E F + G + + G FV S
Sbjct: 7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGG 65
Query: 62 --EYG----------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
YG SRE ++KA D+ + L + S A F+ +A+ R+
Sbjct: 66 ATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQL--SQHYADTALNFFKMALGRHL 123
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL+L L I N+
Sbjct: 124 TRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCI----NI 179
Query: 170 LKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
+DP +++ +F +RL G +V TA I+ MK+D + +GR+P+GLCGAAL ++A
Sbjct: 180 -PSLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAA 238
Query: 229 LTHGLKFSKSDIIEDFMARKKELHEGVA--ANLPNNG 263
H + D+I + L + ++ A P+ G
Sbjct: 239 RMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGG 275
Score = 94 (38.1 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 485 GPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
GP+ TA EA +ML +K++SSKINY++L+ L D
Sbjct: 501 GPSSTAGEAIEKMLQEKKISSKINYEILKTLTD 533
Score = 71 (30.1 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 293 EEFMTISEGLEGGADPPAFQVA---ERERMVKASAEENSSFERESDS 336
EEFMT+ LE DPP+F+ A +RER+ E + ++E D+
Sbjct: 279 EEFMTVD--LEREQDPPSFKAARKKDRERIKDMGEHELTELQKEIDA 323
Score = 69 (29.3 bits), Expect = 3.3e-36, Sum P(4) = 3.3e-36
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 423
D++D E+D Y+ EEE K +W+ +N EY
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEY 468
>UNIPROTKB|F1PRK4 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
PRINTS:PR00685 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
Ensembl:ENSCAFT00000029237 Uniprot:F1PRK4
Length = 616
Score = 293 (108.2 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 72/199 (36%), Positives = 112/199 (56%)
Query: 46 AGQSQ-LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
AG++ L G F + E SR + ++ + + N L + + + A F+ +A
Sbjct: 2 AGKTPTLGGGFHVNLGKE---SRAQTLQNGRRQIHHLGNQLQLNQ--HCLDTAFNFFKMA 56
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I
Sbjct: 57 VSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI- 115
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGA 222
N +DP +++ +F LL G K +V TA +L MKRDW+ TGR+PSGLCGA
Sbjct: 116 ---NA-PAIDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGA 170
Query: 223 ALYVSALTHGLKFSKSDII 241
AL V+A H + + ++I
Sbjct: 171 ALLVAARMHDFRRTVKEVI 189
Score = 99 (39.9 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 47/189 (24%), Positives = 73/189 (38%)
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG----LCRSCYEEFMTISEGL 302
R K+L + ++ L ++S + + + +P A G L R E T S L
Sbjct: 241 RLKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALATLTRDGSVEDTTSS--L 298
Query: 303 EGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKV--------QSPEPESIG 354
G DP E E + ++ N F +E +S +V + P ES+
Sbjct: 299 FGEEDP------EDEELEAVASHLNKDFYQELLGDSISSSSEVAGGAEGGSRPPALESLL 352
Query: 355 VPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKI 414
P ++ + + D T DG + S IDD E+D Y+ NE E K
Sbjct: 353 GPLPTAASLGISDSIRECISSQSQDPTDPCGDGELDLSGIDDLEIDRYILNEAEARVKAE 412
Query: 415 IWEEMNREY 423
+W N EY
Sbjct: 413 LWMRENAEY 421
Score = 78 (32.5 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY VL L
Sbjct: 458 ASTAGEAIEKMLEQKKISSKINYSVLRDL 486
Score = 65 (27.9 bits), Expect = 4.6e-30, Sum P(3) = 4.6e-30
Identities = 28/128 (21%), Positives = 55/128 (42%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES 352
+EFM I LEG DPP++ +R+ +K + S E + S D ++ S
Sbjct: 217 DEFMRID--LEGECDPPSYTAGQRKLRLKQLEQVLSKKLEEVEGEISSYQDAIEIELENS 274
Query: 353 IGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYK 412
K T + +G V+ TT + G + D +D E++ + + Y+
Sbjct: 275 RPKAKGALA-TLTRDGS--------VEDTTSSLFGEE---DPEDEELEAVASHLNKDFYQ 322
Query: 413 KIIWEEMN 420
+++ + ++
Sbjct: 323 ELLGDSIS 330
>UNIPROTKB|J9PB52 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685 GO:GO:0005634
GO:GO:0045893 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
Ensembl:ENSCAFT00000046229 Uniprot:J9PB52
Length = 562
Score = 272 (100.8 bits), Expect = 3.2e-31, Sum P(3) = 3.2e-31
Identities = 60/141 (42%), Positives = 88/141 (62%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLC 220
I N +DP +++ +F LL G K +V TA +L MKRDW+ TGR+PSGLC
Sbjct: 61 I----NA-PAIDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLC 114
Query: 221 GAALYVSALTHGLKFSKSDII 241
GAAL V+A H + + ++I
Sbjct: 115 GAALLVAARMHDFRRTVKEVI 135
Score = 99 (39.9 bits), Expect = 3.2e-31, Sum P(3) = 3.2e-31
Identities = 47/189 (24%), Positives = 73/189 (38%)
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG----LCRSCYEEFMTISEGL 302
R K+L + ++ L ++S + + + +P A G L R E T S L
Sbjct: 187 RLKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALATLTRDGSVEDTTSS--L 244
Query: 303 EGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKV--------QSPEPESIG 354
G DP E E + ++ N F +E +S +V + P ES+
Sbjct: 245 FGEEDP------EDEELEAVASHLNKDFYQELLGDSISSSSEVAGGAEGGSRPPALESLL 298
Query: 355 VPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKI 414
P ++ + + D T DG + S IDD E+D Y+ NE E K
Sbjct: 299 GPLPTAASLGISDSIRECISSQSQDPTDPCGDGELDLSGIDDLEIDRYILNEAEARVKAE 358
Query: 415 IWEEMNREY 423
+W N EY
Sbjct: 359 LWMRENAEY 367
Score = 78 (32.5 bits), Expect = 3.2e-31, Sum P(3) = 3.2e-31
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY VL L
Sbjct: 404 ASTAGEAIEKMLEQKKISSKINYSVLRDL 432
Score = 65 (27.9 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 28/128 (21%), Positives = 55/128 (42%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES 352
+EFM I LEG DPP++ +R+ +K + S E + S D ++ S
Sbjct: 163 DEFMRID--LEGECDPPSYTAGQRKLRLKQLEQVLSKKLEEVEGEISSYQDAIEIELENS 220
Query: 353 IGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYK 412
K T + +G V+ TT + G + D +D E++ + + Y+
Sbjct: 221 RPKAKGALA-TLTRDGS--------VEDTTSSLFGEE---DPEDEELEAVASHLNKDFYQ 268
Query: 413 KIIWEEMN 420
+++ + ++
Sbjct: 269 ELLGDSIS 276
>CGD|CAL0004048 [details] [associations]
symbol:BRF1 species:5476 "Candida albicans" [GO:0000126
"transcription factor TFIIIB complex" evidence=ISS] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000994
"RNA polymerase III core binding" evidence=IEA] [GO:0001156
"TFIIIC-class transcription factor binding" evidence=IEA]
[GO:0001112 "DNA-dependent transcriptional open complex formation"
evidence=IEA] [GO:0090074 "negative regulation of protein
homodimerization activity" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0070893 "transposon integration" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0004048 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0006384
GO:GO:0000126 InterPro:IPR023486 EMBL:Z47202 PIR:B55483
RefSeq:XP_711715.1 RefSeq:XP_712189.1 ProteinModelPortal:P43072
SMR:P43072 STRING:P43072 GeneID:3646221 GeneID:3646689
KEGG:cal:CaO19.13970 KEGG:cal:CaO19.6649 KO:K15196 Uniprot:P43072
Length = 553
Score = 317 (116.6 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 77/248 (31%), Positives = 130/248 (52%)
Query: 4 CSSCARHVTGHRPYDS--QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
C +C Y + + C RCG VLE++ +E F ++++G + + G V Q+
Sbjct: 10 CKTCGHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMVGADQA 69
Query: 62 E--YGASRERLMEKAFDDM----RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
+ R+ ME + R++K A + D I A ++ +A+ NF +GRR
Sbjct: 70 RATFAGGRQNAMESREQTLSNGKRKIKRIAAALKIPDYIAEAAGEWFRLALTLNFVQGRR 129
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I L D
Sbjct: 130 SNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLAD 185
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS+F+ F ++L KV A + M DWI GR+P+G+ GA + ++A +
Sbjct: 186 PSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNF 245
Query: 234 KFSKSDII 241
+ S ++I+
Sbjct: 246 RRSHAEIV 253
Score = 56 (24.8 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 485 GPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
G ++A ++ + ++K +S KINYD L+ L
Sbjct: 516 GTPRSAADSAKMYISKTSVSKKINYDSLKGL 546
Score = 51 (23.0 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 390 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 423
N D D+ ++ L EEE K+ IW +N +Y
Sbjct: 431 NSDDDDEIVLESKL-TEEEVAIKERIWTGLNHDY 463
>UNIPROTKB|P43072 [details] [associations]
symbol:TDS4 "Transcription factor IIIB 70 kDa subunit"
species:237561 "Candida albicans SC5314" [GO:0000126 "transcription
factor TFIIIB complex" evidence=ISS] [GO:0006384 "transcription
initiation from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0004048 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0006384
GO:GO:0000126 InterPro:IPR023486 EMBL:Z47202 PIR:B55483
RefSeq:XP_711715.1 RefSeq:XP_712189.1 ProteinModelPortal:P43072
SMR:P43072 STRING:P43072 GeneID:3646221 GeneID:3646689
KEGG:cal:CaO19.13970 KEGG:cal:CaO19.6649 KO:K15196 Uniprot:P43072
Length = 553
Score = 317 (116.6 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 77/248 (31%), Positives = 130/248 (52%)
Query: 4 CSSCARHVTGHRPYDS--QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
C +C Y + + C RCG VLE++ +E F ++++G + + G V Q+
Sbjct: 10 CKTCGHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMVGADQA 69
Query: 62 E--YGASRERLMEKAFDDM----RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
+ R+ ME + R++K A + D I A ++ +A+ NF +GRR
Sbjct: 70 RATFAGGRQNAMESREQTLSNGKRKIKRIAAALKIPDYIAEAAGEWFRLALTLNFVQGRR 129
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I L D
Sbjct: 130 SNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLAD 185
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS+F+ F ++L KV A + M DWI GR+P+G+ GA + ++A +
Sbjct: 186 PSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNF 245
Query: 234 KFSKSDII 241
+ S ++I+
Sbjct: 246 RRSHAEIV 253
Score = 56 (24.8 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 485 GPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
G ++A ++ + ++K +S KINYD L+ L
Sbjct: 516 GTPRSAADSAKMYISKTSVSKKINYDSLKGL 546
Score = 51 (23.0 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 390 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 423
N D D+ ++ L EEE K+ IW +N +Y
Sbjct: 431 NSDDDDEIVLESKL-TEEEVAIKERIWTGLNHDY 463
>UNIPROTKB|G3X7R9 [details] [associations]
symbol:G3X7R9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000812 InterPro:IPR011665
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:DAAA02053372 EMBL:DAAA02053373
EMBL:DAAA02053374 EMBL:DAAA02053375 EMBL:DAAA02053376
Ensembl:ENSBTAT00000044278 Uniprot:G3X7R9
Length = 639
Score = 259 (96.2 bits), Expect = 7.5e-30, Sum P(4) = 7.5e-30
Identities = 66/201 (32%), Positives = 113/201 (56%)
Query: 46 AGQSQ-LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
AG++ L G F ++ E SR + ++ + + N L + + + A F+ +A
Sbjct: 2 AGKAPTLGGGFHVSLGKE---SRAQTLQNGRRQIHHLGNQLQLNQ--HCLDTAFNFFKMA 56
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY--LNINVYELGAVYLQLCQVLY 162
V+++ T+GRRT V A+CLYL CR + P +L + + +++V+E +L + + Y
Sbjct: 57 VSKHLTRGRRTAHVVAACLYLVCRTEGTPRILRHLAVHGGFSVHVFESNRTFLVISR--Y 114
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLC 220
+ E+ L+ +P +++ +F LL G K +V TA +L MKRDW+ TGR+PSGLC
Sbjct: 115 LCVEAEALR--NPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLC 171
Query: 221 GAALYVSALTHGLKFSKSDII 241
GAAL V+A H + + ++I
Sbjct: 172 GAALLVAARMHDFRRTVKEVI 192
Score = 92 (37.4 bits), Expect = 7.5e-30, Sum P(4) = 7.5e-30
Identities = 31/117 (26%), Positives = 46/117 (39%)
Query: 315 ERERMVKASAEENSSFERE---SDSPFMSRVDKV-----QSPEPESIGVPKNCTTQTASN 366
E E + A++ N F +E P S V + P ES+ P +
Sbjct: 308 EDEELEAAASHLNKDFYQELLGGSVPGSSEAAGVPEEGRRPPALESLLGPLPTAASLGIS 367
Query: 367 EGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 423
+ + +P + DG + S IDD E+D Y+ NE E K +W N EY
Sbjct: 368 DSIRECISSPSHEPKDACGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEY 424
Score = 77 (32.2 bits), Expect = 7.5e-30, Sum P(4) = 7.5e-30
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY VL L
Sbjct: 461 ASTAGEAIEKMLEQKKISSKINYSVLRGL 489
Score = 49 (22.3 bits), Expect = 7.5e-30, Sum P(4) = 7.5e-30
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVK 321
+EFM I LE DPP++ +R+ +K
Sbjct: 220 DEFMKID--LEEECDPPSYTAGQRKLRLK 246
>RGD|1311158 [details] [associations]
symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
transcription initiation factor IIIB (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:1311158 GO:GO:0005634 GO:GO:0045893
GO:GO:0008270 GO:GO:0006352 GO:GO:0003743 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 KO:K15196 CTD:2972 OrthoDB:EOG4NGGMJ
GeneTree:ENSGT00390000010349 EMBL:CH474034 IPI:IPI00366169
RefSeq:NP_001100231.1 UniGene:Rn.205393 Ensembl:ENSRNOT00000019689
GeneID:299347 KEGG:rno:299347 UCSC:RGD:1311158 NextBio:645266
Uniprot:D4A8W8
Length = 686
Score = 192 (72.6 bits), Expect = 2.5e-27, Sum P(4) = 2.5e-27
Identities = 46/109 (42%), Positives = 66/109 (60%)
Query: 135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-- 192
+L+D S+ L +NVY LG +L L + L I N +DP +++ +F LL G K
Sbjct: 158 MLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEFGEKNH 211
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 212 EVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 260
Score = 117 (46.2 bits), Expect = 2.5e-27, Sum P(4) = 2.5e-27
Identities = 42/183 (22%), Positives = 73/183 (39%)
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
R K+L + ++ L ++S + + + +P A G + ++ G + +
Sbjct: 312 RMKQLEQVLSKKLEEVEGEISTYQDAIEIELENSRPKAKGALANLSKD----GSGEDATS 367
Query: 307 DPPAFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSPEP---ESIGVPKNCT 360
P + E E + A++ N F RE +D + D P ES+ P
Sbjct: 368 SPFCEEDTEDEELEAAASHMNKDFYRELLGADGGSEAAEDADGGSRPLALESLLGPLPTA 427
Query: 361 TQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMN 420
++ + +P D + DG + S IDD E+D Y+ NE E K +W N
Sbjct: 428 ASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMREN 487
Query: 421 REY 423
EY
Sbjct: 488 AEY 490
Score = 80 (33.2 bits), Expect = 2.5e-27, Sum P(4) = 2.5e-27
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C CG VLED+ +E FV+N+ G S G FV
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFV 58
Score = 78 (32.5 bits), Expect = 2.5e-27, Sum P(4) = 2.5e-27
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY VL L
Sbjct: 527 ASTAGEAIEKMLEQKKISSKINYSVLRDL 555
Score = 67 (28.6 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERE-RMVKASAEENSSFER-ESD-SPFMSRVD-KVQSP 348
+EFM I LE DPP++ +R+ RM + + E E + S + ++ ++++
Sbjct: 288 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISTYQDAIEIELENS 345
Query: 349 EPESIGVPKNCTTQTASNEGEG-DHTKTPGVDATTE 383
P++ G N S +G G D T +P + TE
Sbjct: 346 RPKAKGALANL-----SKDGSGEDATSSPFCEEDTE 376
Score = 42 (19.8 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 239 DIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG----KPFACGLCRSCYEE 294
D IE + + +G ANL +G + C+ +DT + A + + Y E
Sbjct: 336 DAIEIELENSRPKAKGALANLSKDGSGEDATSSPFCE-EDTEDEELEAAASHMNKDFYRE 394
Query: 295 FMTISEGLEGGAD 307
+ G E D
Sbjct: 395 LLGADGGSEAAED 407
>ASPGD|ASPL0000037776 [details] [associations]
symbol:AN3116 species:162425 "Emericella nidulans"
[GO:0000126 "transcription factor TFIIIB complex" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 EMBL:BN001306
GO:GO:0006352 EMBL:AACD01000051 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 KO:K15196 HOGENOM:HOG000198688 OMA:CRKERTH
RefSeq:XP_660720.1 ProteinModelPortal:Q5B8L4 STRING:Q5B8L4
EnsemblFungi:CADANIAT00009960 GeneID:2873798 KEGG:ani:AN3116.2
OrthoDB:EOG4SJ8P6 Uniprot:Q5B8L4
Length = 713
Score = 268 (99.4 bits), Expect = 2.6e-27, Sum P(4) = 2.6e-27
Identities = 71/214 (33%), Positives = 112/214 (52%)
Query: 34 NFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEI 93
N S A + GQ SG T+ SE E ++ ++ + +GE D+
Sbjct: 59 NPSCPAPHIIEDDGQKVCSG--CGTVVSEANIVSEVTFGESASGAAIVQGSF-VGE-DQ- 113
Query: 94 VHVAKRFYG----IAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVY 148
H A + G +AV NF +GRRT+ V A CLY+ACR Q +LIDF++ L INV+
Sbjct: 114 THSASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVF 173
Query: 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKR 207
+LG Y L L + ++ +DP +++F +L G +V A I+ M R
Sbjct: 174 KLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVASEAVRIVQRMNR 233
Query: 208 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
DW+TTGR+P+G+CGAAL ++A + + + +++
Sbjct: 234 DWMTTGRRPAGICGAALILAARMNNFRRTVREVV 267
Score = 85 (35.0 bits), Expect = 2.6e-27, Sum P(4) = 2.6e-27
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
A T EATRRML ++ S KINY +LE LF +
Sbjct: 541 ASTPAEATRRMLERRGFSKKINYRLLETLFGE 572
Score = 83 (34.3 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR 67
D Q C CG V+ + N +E TF ++A+G + + G+FV Q+ + AS+
Sbjct: 71 DGQKVCSGCGTVVSEANIVSEVTFGESASGAAIVQGSFVGEDQT-HSASK 119
Score = 55 (24.4 bits), Expect = 2.6e-27, Sum P(4) = 2.6e-27
Identities = 22/87 (25%), Positives = 38/87 (43%)
Query: 344 KVQSPEPESIGVPKNCTTQTASNEGEGDHT-KTPGVDATTEASDGSDNFSDIDD--FEVD 400
K+ SP PE + + + + +G + ++ AT SDN +ID+ F+ D
Sbjct: 403 KLPSPSPEQVASEEALENEMSEYLAKGSNMIESIECGATRPKKVVSDN-PEIDEAEFDSD 461
Query: 401 GYLHN----EEEKHYKKIIWEEMNREY 423
+ N E K+ IW N++Y
Sbjct: 462 PEVSNCLLAPHEVEIKERIWVHENKDY 488
Score = 49 (22.3 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 361 TQTASNEGEGDHTKTPGV-DATTEASDGSDNFSDIDDFEVD 400
T+T SN T+ G+ A +A D D +D DD E D
Sbjct: 646 TKTDSNPPTDPSTEVVGLAPADPQAVDPDDEDNDYDDDEGD 686
Score = 46 (21.3 bits), Expect = 2.6e-27, Sum P(4) = 2.6e-27
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 293 EEFMTISEGLEGGADPPAFQVAER----ERMVKASAEENSSFERESDS 336
++F ++ LE DPP+F A + R +K +A E ++ E E D+
Sbjct: 295 DQFRSVQ--LENTHDPPSFTRARQGRKPARSIKRNAAETAA-EIEEDA 339
>WB|WBGene00000271 [details] [associations]
symbol:brf-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006898 GO:GO:0040007
GO:GO:0045893 GO:GO:0002119 GO:GO:0008270 GO:GO:0000003
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 EMBL:FO080734
KO:K15196 GeneTree:ENSGT00390000010349 PIR:T16368
RefSeq:NP_495526.1 ProteinModelPortal:Q20429 SMR:Q20429
STRING:Q20429 PaxDb:Q20429 EnsemblMetazoa:F45E12.2.1
EnsemblMetazoa:F45E12.2.2 GeneID:174199 KEGG:cel:CELE_F45E12.2
UCSC:F45E12.2 CTD:174199 WormBase:F45E12.2 InParanoid:Q20429
OMA:CRLENTA NextBio:882969 Uniprot:Q20429
Length = 759
Score = 316 (116.3 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 105/385 (27%), Positives = 175/385 (45%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFV---RTI 59
CS+C C CG VLE+ TE F + A G L G FV R
Sbjct: 5 CSNCGSSEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFVSSERAA 64
Query: 60 QSEYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
+ + SRE K + ++ + L I + ++ A FY + V+RN T+GR
Sbjct: 65 ANNFNGMGSQESREMTYAKGRKVIDELGSQLRI--NSHCMNTAFNFYKMCVSRNLTRGRN 122
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V A C+Y+ CR ++ LL+DFS+ INV++LG L + L I N L D
Sbjct: 123 RSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRI----N-LPSTD 177
Query: 175 PSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
P +++ +F L G +K V + A ++ MKRDW++TGR+P+G+CGAAL ++A L
Sbjct: 178 PCLYIMRFACVLDFGDKQKEVVNLATRLVQRMKRDWMSTGRRPTGICGAALLIAA--RSL 235
Query: 234 KFSKSDIIEDFMARKKELHEGVA-------ANLPNNGPKVSGMNEVLCKHKDTGKPFACG 286
F++S I D + R + EGV + P+ + + V +H + +
Sbjct: 236 NFNRS--INDIV-RVVHISEGVIRKRLDEFSQTPSGSLTIDEFSTVDLEHSEDPPAYRES 292
Query: 287 LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 346
++ ++ +E E + Q+ E E V+A+ ++ E+ S SP+ + +
Sbjct: 293 RRKAREDQLRKEAEQAESMKE----QLGEMEAHVEAALDKKRK-EKFSKSPYARMISENL 347
Query: 347 SPEPESIGVPKNCTTQTASNEGEGD 371
E + + +++ E D
Sbjct: 348 GKENDKMQTLTETVVESSGLEKGAD 372
Score = 58 (25.5 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 493 ATRRMLTKKRLSSKINYDVLEKL 515
A +++ +K+LS+K+NY++L+ L
Sbjct: 503 AVEKVIAEKKLSNKVNYEMLKDL 525
>TAIR|locus:4515102612 [details] [associations]
symbol:AT1G30455 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
EMBL:CP002684 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0003743 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 UniGene:At.69479
IPI:IPI00542754 RefSeq:NP_001117389.1 ProteinModelPortal:F4I4V4
SMR:F4I4V4 EnsemblPlants:AT1G30455.1 GeneID:6240845
KEGG:ath:AT1G30455 Uniprot:F4I4V4
Length = 254
Score = 215 (80.7 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 68/206 (33%), Positives = 96/206 (46%)
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 219 LCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 278
+CGAALY +AL+HG SD F +KE E A+ N+ + S + L D
Sbjct: 61 ICGAALYTAALSHG----GSDP-PSFQRAEKERMEEKASTEENDKQQNSDESSTL-SDLD 114
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 338
G+ C + I E P + E + A ++ FE +
Sbjct: 115 DGE-LDCYFRNPKEVHLVEIIFDHEN----PGYDEKEAAAL-NACNNASNLFEASKAAAA 168
Query: 339 MSRVDKVQSPEPESIGVPKNCTTQTA 364
SR DK Q E P T A
Sbjct: 169 KSRKDKRQQRAEEEKNAPPPATAMEA 194
Score = 62 (26.9 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 483 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
N+ P TA+EA M+ +K+ N D LE+L D S
Sbjct: 184 NAPPPATAMEAVDSMVKRKKFPDT-NCDYLEELLDTS 219
>UNIPROTKB|H0YIV6 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1 Ensembl:ENST00000546417
Uniprot:H0YIV6
Length = 185
Score = 148 (57.2 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
Q DP +++ +F LL G K +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 34 QNDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 92
Query: 230 THGLKFSKSDII 241
H + + ++I
Sbjct: 93 MHDFRRTVKEVI 104
Score = 53 (23.7 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 346
+EFM I LE DPP++ +R+ +K + S E + S D ++
Sbjct: 132 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 183
>UNIPROTKB|F8VWT8 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
IPI:IPI01020829 ProteinModelPortal:F8VWT8 SMR:F8VWT8
Ensembl:ENST00000552127 ArrayExpress:F8VWT8 Bgee:F8VWT8
Uniprot:F8VWT8
Length = 155
Score = 125 (49.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 46
Score = 53 (23.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 346
+EFM I LE DPP++ +R+ +K + S E + S D ++
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125
>UNIPROTKB|Q3SYD7 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
EMBL:AL512355 UniGene:Hs.424484 HGNC:HGNC:11551 ChiTaRS:BRF1
EMBL:BC103861 IPI:IPI00651667 SMR:Q3SYD7 STRING:Q3SYD7
Ensembl:ENST00000551787 Uniprot:Q3SYD7
Length = 161
Score = 125 (49.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 46
Score = 53 (23.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 346
+EFM I LE DPP++ +R+ +K + S E + S D ++
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125
>UNIPROTKB|I3LCQ3 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
GeneTree:ENSGT00390000010349 Ensembl:ENSSSCT00000031183 OMA:DEICSYQ
Uniprot:I3LCQ3
Length = 99
Score = 125 (49.1 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 46
Score = 47 (21.6 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERE-RM 319
+EFM I LE DPP++ +R+ RM
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRM 99
>UNIPROTKB|F8VXJ4 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
IPI:IPI01021144 ProteinModelPortal:F8VXJ4 SMR:F8VXJ4
Ensembl:ENST00000550692 ArrayExpress:F8VXJ4 Bgee:F8VXJ4
Uniprot:F8VXJ4
Length = 64
Score = 146 (56.5 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 I 163
I
Sbjct: 61 I 61
>UNIPROTKB|A3KN61 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
EMBL:AL512355 UniGene:Hs.424484 HGNC:HGNC:11551 ChiTaRS:BRF1
EMBL:BC133655 IPI:IPI00844553 SMR:A3KN61 STRING:A3KN61
Ensembl:ENST00000379932 Uniprot:A3KN61
Length = 184
Score = 125 (49.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 46
Score = 53 (23.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 346
+EFM I LE DPP++ +R+ +K + S E + S D ++
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125
>UNIPROTKB|F8VS45 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1 IPI:IPI01021031
ProteinModelPortal:F8VS45 SMR:F8VS45 Ensembl:ENST00000549655
ArrayExpress:F8VS45 Bgee:F8VS45 Uniprot:F8VS45
Length = 237
Score = 125 (49.1 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 46
Score = 55 (24.4 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 293 EEFMTISEGLEGGADPPAFQVAERE-RMVKASAEENSSFER-ESD-SPFMSRVD-KVQSP 348
+EFM I LE DPP++ +R+ RM + + E E + S + ++ ++++
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENS 131
Query: 349 EPESIG----VPKNCTTQ-TASNE-GEGD 371
P++ G + K+ +T+ TAS+ GE D
Sbjct: 132 RPKAKGGLASLAKDGSTEDTASSLCGEED 160
>UNIPROTKB|F8VWY1 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
IPI:IPI01025938 ProteinModelPortal:F8VWY1 SMR:F8VWY1
Ensembl:ENST00000550208 ArrayExpress:F8VWY1 Bgee:F8VWY1
Uniprot:F8VWY1
Length = 45
Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEV 45
>UNIPROTKB|F8VQ19 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 Pfam:PF07741 GO:GO:0005634
GO:GO:0045893 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
IPI:IPI01021565 Ensembl:ENST00000547562 ArrayExpress:F8VQ19
Bgee:F8VQ19 Uniprot:F8VQ19
Length = 281
Score = 102 (41.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/187 (24%), Positives = 75/187 (40%)
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEG 304
R K+L + ++ L ++S + + + +P A G S ++ T + L G
Sbjct: 22 RMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG 81
Query: 305 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCT 360
D E E + A++ N RE + SPE P ++G +
Sbjct: 82 EED------TEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-P 134
Query: 361 TQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIW 416
TA++ G D + + D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 135 LPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELW 194
Query: 417 EEMNREY 423
N EY
Sbjct: 195 MRENAEY 201
Score = 79 (32.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY VL L
Sbjct: 238 ASTAREAIEKMLEQKKISSKINYSVLRGL 266
>UNIPROTKB|F2Z5J6 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:CU179630 EMBL:CU151869 Ensembl:ENSSSCT00000007587
Uniprot:F2Z5J6
Length = 316
Score = 130 (50.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 43/178 (24%), Positives = 81/178 (45%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
L LP K+V A I + GR P + AA+Y+++ K ++ +I+
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIL 275
>UNIPROTKB|F1NXP2 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:AADN02012841 IPI:IPI00571339 Ensembl:ENSGALT00000010015
Uniprot:F1NXP2
Length = 306
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 42/176 (23%), Positives = 79/176 (44%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 98 SSSDRAMMNAFKEITNMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRSNDAIASACLY 155
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 156 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 210
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 211 NL--GLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 264
>UNIPROTKB|F2Z4J6 [details] [associations]
symbol:LOC786656 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
OMA:WRAFDPD InterPro:IPR023486 IPI:IPI00697087 UniGene:Bt.39806
GeneTree:ENSGT00390000006671 EMBL:DAAA02007976
ProteinModelPortal:F2Z4J6 SMR:F2Z4J6 PRIDE:F2Z4J6
Ensembl:ENSBTAT00000044137 Uniprot:F2Z4J6
Length = 316
Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 43/177 (24%), Positives = 80/177 (45%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>UNIPROTKB|E2RPG1 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 OMA:WRAFDPD InterPro:IPR023486 CTD:2959
GeneTree:ENSGT00390000006671 EMBL:AAEX03004837 RefSeq:XP_537085.1
ProteinModelPortal:E2RPG1 SMR:E2RPG1 PRIDE:E2RPG1
Ensembl:ENSCAFT00000032192 GeneID:479960 KEGG:cfa:479960
NextBio:20855065 Uniprot:E2RPG1
Length = 316
Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 43/177 (24%), Positives = 80/177 (45%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>UNIPROTKB|Q00403 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046966 "thyroid hormone receptor
binding" evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 Reactome:REACT_116125 GO:GO:0019048
GO:GO:0005654 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006368 GO:GO:0006367
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
Reactome:REACT_1788 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AL445991 PDB:1VOL PDBsum:1VOL PDB:1C9B
PDBsum:1C9B HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
EMBL:X59268 EMBL:M76766 EMBL:AK289822 EMBL:AB451296 EMBL:BC020597
EMBL:S44184 IPI:IPI00022820 PIR:S17654 RefSeq:NP_001505.1
UniGene:Hs.481852 PDB:1DL6 PDB:1RLY PDB:1RO4 PDB:1TFB PDB:2PHG
PDBsum:1DL6 PDBsum:1RLY PDBsum:1RO4 PDBsum:1TFB PDBsum:2PHG
ProteinModelPortal:Q00403 SMR:Q00403 DIP:DIP-1077N IntAct:Q00403
MINT:MINT-156550 STRING:Q00403 PhosphoSite:Q00403 DMDM:135629
PaxDb:Q00403 PeptideAtlas:Q00403 PRIDE:Q00403 DNASU:2959
Ensembl:ENST00000370500 GeneID:2959 KEGG:hsa:2959 UCSC:uc001dmo.4
GeneCards:GC01M089318 HGNC:HGNC:4648 MIM:189963 neXtProt:NX_Q00403
PharmGKB:PA29035 InParanoid:Q00403 PhylomeDB:Q00403 ChiTaRS:GTF2B
EvolutionaryTrace:Q00403 GenomeRNAi:2959 NextBio:11730
PMAP-CutDB:Q00403 ArrayExpress:Q00403 Bgee:Q00403 CleanEx:HS_GTF2B
Genevestigator:Q00403 GermOnline:ENSG00000137947 Uniprot:Q00403
Length = 316
Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 43/177 (24%), Positives = 80/177 (45%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>MGI|MGI:2385191 [details] [associations]
symbol:Gtf2b "general transcription factor IIB"
species:10090 "Mus musculus" [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046966 "thyroid hormone
receptor binding" evidence=ISO] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 MGI:MGI:2385191 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0001047 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F EMBL:BC016637
IPI:IPI00153874 RefSeq:NP_663521.1 UniGene:Mm.271756
ProteinModelPortal:P62915 SMR:P62915 STRING:P62915
PhosphoSite:P62915 PaxDb:P62915 PRIDE:P62915
Ensembl:ENSMUST00000029938 GeneID:229906 KEGG:mmu:229906
InParanoid:P62915 NextBio:379735 Bgee:P62915 CleanEx:MM_GTF2B
Genevestigator:P62915 GermOnline:ENSMUSG00000028271 Uniprot:P62915
Length = 316
Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 43/177 (24%), Positives = 80/177 (45%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>RGD|619735 [details] [associations]
symbol:Gtf2b "general transcription factor IIB" species:10116
"Rattus norvegicus" [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA;ISO] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:619735 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
GeneTree:ENSGT00390000006671 EMBL:X65948 EMBL:BC085345
IPI:IPI00200556 PIR:S26299 RefSeq:NP_112303.1 UniGene:Rn.6109
ProteinModelPortal:P62916 SMR:P62916 IntAct:P62916 STRING:P62916
PRIDE:P62916 Ensembl:ENSRNOT00000015032 GeneID:81673 KEGG:rno:81673
InParanoid:P62916 NextBio:615268 Genevestigator:P62916
Uniprot:P62916
Length = 316
Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 43/177 (24%), Positives = 80/177 (45%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>WB|WBGene00006648 [details] [associations]
symbol:ttb-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 EMBL:FO081767 RefSeq:NP_503146.1
ProteinModelPortal:O16991 SMR:O16991 STRING:O16991 PaxDb:O16991
EnsemblMetazoa:W03F9.5.1 EnsemblMetazoa:W03F9.5.2
EnsemblMetazoa:W03F9.5.3 GeneID:178544 KEGG:cel:CELE_W03F9.5
UCSC:W03F9.5.1 CTD:178544 WormBase:W03F9.5
GeneTree:ENSGT00390000006671 InParanoid:O16991 NextBio:901568
Uniprot:O16991
Length = 306
Score = 126 (49.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 45/190 (23%), Positives = 84/190 (44%)
Query: 52 SGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
S N + Q + + +R M A +R+M +++ + I A R + + +
Sbjct: 85 SDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRN--IQDSASRIFKDVLESKALR 142
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
G+ E A+CLY+ACR+ P + ++ E+G + + + L E+N L+
Sbjct: 143 GKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIVRSL----ETN-LE 197
Query: 172 QVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
Q+ + F+ +F L LP N R ++ D + GR P + AA+Y+++
Sbjct: 198 QITSADFMSRFCGNLSLP--NSIQAAATRIAKCAVDMD-LVAGRTPISIAAAAIYMASQA 254
Query: 231 HGLKFSKSDI 240
K S +I
Sbjct: 255 SAEKRSAKEI 264
>UNIPROTKB|Q2KIN8 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 EMBL:BC112570
IPI:IPI00697087 RefSeq:NP_001039607.1 UniGene:Bt.39806
ProteinModelPortal:Q2KIN8 SMR:Q2KIN8 STRING:Q2KIN8 PRIDE:Q2KIN8
GeneID:513231 KEGG:bta:513231 CTD:2959 HOVERGEN:HBG017914
InParanoid:Q2KIN8 OrthoDB:EOG4QRH4F NextBio:20870763 Uniprot:Q2KIN8
Length = 316
Score = 126 (49.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 43/177 (24%), Positives = 80/177 (45%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAEAAIYMASQASAEKRTQKEI 274
>ZFIN|ZDB-GENE-030131-3544 [details] [associations]
symbol:gtf2b "general transcription factor IIB"
species:7955 "Danio rerio" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 ZFIN:ZDB-GENE-030131-3544 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914
HSSP:Q00403 EMBL:BC055569 IPI:IPI00501186 RefSeq:NP_955991.1
UniGene:Dr.78599 ProteinModelPortal:Q7SX98 SMR:Q7SX98 STRING:Q7SX98
GeneID:324823 KEGG:dre:324823 NextBio:20808979 ArrayExpress:Q7SX98
Uniprot:Q7SX98
Length = 316
Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 41/178 (23%), Positives = 82/178 (46%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + I+ + + KGR + + ++CLY
Sbjct: 108 SSSDRAMLNAFKEITTMADRINLPRN--IIDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RLLPGGNKKVCDTARDILA--SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G K A +A +++ D + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NL---GLPKQVQMAATYIARKAVELD-LVPGRSPISVAAAAIYMASQASAEKKTQKEI 274
>TAIR|locus:2076259 [details] [associations]
symbol:AT3G10330 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AC009400 HOGENOM:HOG000108634 KO:K03124
ProtClustDB:CLSN2683788 InterPro:IPR023486 EMBL:AY050421
EMBL:AY060526 EMBL:AY087850 EMBL:Z34661 IPI:IPI00519983
RefSeq:NP_187644.1 UniGene:At.199 ProteinModelPortal:Q9SS44
SMR:Q9SS44 STRING:Q9SS44 PaxDb:Q9SS44 PRIDE:Q9SS44
EnsemblPlants:AT3G10330.1 GeneID:820195 KEGG:ath:AT3G10330
TAIR:At3g10330 InParanoid:Q9SS44 OMA:SNDDQNG PhylomeDB:Q9SS44
Genevestigator:Q9SS44 Uniprot:Q9SS44
Length = 312
Score = 99 (39.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 39/180 (21%), Positives = 78/180 (43%)
Query: 52 SGNFVRTIQSEY---GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
SG+F+ + + G++ +R + AF + M + L + + I A Y +
Sbjct: 83 SGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVAT--IKDRANEIYKRVEDQK 140
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN-INVYELGAVYLQLCQVLYIADES 167
++GR + + A+CLY+ACRQ+ KP + + + N E+G + + L +
Sbjct: 141 SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ 200
Query: 168 NV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
V + + F+ +F L G + A++ + K + R P + A +Y+
Sbjct: 201 LVEMGTIHAGDFMRRFCSNL--GMTNQTVKAAQESV--QKSEEFDIRRSPISIAAAVIYI 256
Score = 66 (28.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 3 WCSSCARH---VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQS 49
+CS C RH V H D+ C CG VLE H+ E + + A +S
Sbjct: 5 FCSDCKRHTEVVFDHSAGDT--VCSECGLVLESHSID-ETSEWRTFANES 51
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 540 491 0.00082 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 615 (65 KB)
Total size of DFA: 303 KB (2156 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.67u 0.11s 46.78t Elapsed: 00:00:02
Total cpu time: 46.68u 0.11s 46.79t Elapsed: 00:00:02
Start: Tue May 21 07:46:19 2013 End: Tue May 21 07:46:21 2013