BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009187
(540 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449436026|ref|XP_004135795.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 643
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 323/598 (54%), Positives = 394/598 (65%), Gaps = 85/598 (14%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWCS+C ++V G R L CD CGKVL+ +NFS E TF K++ GQSQLSGNFVR+IQ
Sbjct: 1 MVWCSNCVKNVAGSRDEAGFLYCDMCGKVLDSYNFSQEPTFTKDSGGQSQLSGNFVRSIQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S Y ASRER + KAF+DMR M+N LN+GESDEI+ VA FY IA+ RNFT+GR E VQA
Sbjct: 61 SNYSASRERTLNKAFEDMRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+K+KP+LLIDFSNYL INVY LGAV+LQLC+VL + + V K VDPS+F+
Sbjct: 121 ACLYIACREKNKPYLLIDFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFID 180
Query: 181 KFTDRLLPGG-----NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
KFT LL G K+V TA I+ SMKRDW+ TGRKPSGLCGAALY+SAL++G+K
Sbjct: 181 KFTQCLLGGTKDDGMKKEVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVKC 240
Query: 236 SKSDIIE-------DFMARKKELHEGVAANLPNN-------------------------- 262
+KSDII+ R E + +L N
Sbjct: 241 TKSDIIKIVHICDATLTKRLIEFENTESGSLTNTCLLILVQALQHIDLLEYLPSGHADIS 300
Query: 263 -----------GPKVSGMN------------EVLCKHKDT-GKPFACGLCRSCYEEFMTI 298
K+ G N EVLC HK+ KP+A GLCRSCY++F+ +
Sbjct: 301 EKMNMEEFIVMADKLKGSNSYTNNGSSALSDEVLCVHKNECQKPYALGLCRSCYDDFVEL 360
Query: 299 SEGLEGGADPPAFQVAERERMVKASAEENS-----------------SFERESDSPFMSR 341
S GL+GG++PPAFQ AE+ERM KA+ EE S + E+ESD+ +
Sbjct: 361 SGGLDGGSNPPAFQSAEKERMEKATVEEGSDDCSAIGKFSQGLKPCNNTEKESDNVHVDA 420
Query: 342 VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG 401
+ E E+ G T + D K D T ASD S+N+SDIDD EVDG
Sbjct: 421 SETASFKEAEAKG------TADEQRGPDDDVNKVGADDLGTCASDDSENWSDIDDVEVDG 474
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
YLHNEEEKHYKKIIWEEMNREYLEEQAAK+AAAAAAK A EA+++NC E L+AA++LA A
Sbjct: 475 YLHNEEEKHYKKIIWEEMNREYLEEQAAKDAAAAAAKKAYEANFQNCSEDLKAAKDLAEA 534
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
AAAAVAKSRKE+Q+KRAAEAKN+ PAQTA EATR+ML KKRLSSKINYDVL+KLFD+S
Sbjct: 535 AAAAVAKSRKERQRKRAAEAKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFDES 592
>gi|449485890|ref|XP_004157302.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 663
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 323/598 (54%), Positives = 394/598 (65%), Gaps = 85/598 (14%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWCS+C ++V G R L CD CGKVL+ +NFS E TF K++ GQSQLSGNFVR+IQ
Sbjct: 1 MVWCSNCVKNVAGSRDEAGFLYCDMCGKVLDSYNFSQEPTFTKDSGGQSQLSGNFVRSIQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S Y ASRER + KAF+DMR M+N LN+GESDEI+ VA FY IA+ RNFT+GR E VQA
Sbjct: 61 SNYSASRERTLNKAFEDMRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+K+KP+LLIDFSNYL INVY LGAV+LQLC+VL + + V K VDPS+F+
Sbjct: 121 ACLYIACREKNKPYLLIDFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFID 180
Query: 181 KFTDRLLPGG-----NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
KFT LL G K+V TA I+ SMKRDW+ TGRKPSGLCGAALY+SAL++G+K
Sbjct: 181 KFTQCLLGGTKDDGMKKEVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVKC 240
Query: 236 SKSDIIE-------DFMARKKELHEGVAANLPNN-------------------------- 262
+KSDII+ R E + +L N
Sbjct: 241 TKSDIIKIVHICDATLTKRLIEFENTESGSLTNTCLLILVQALQHIDLLEYLPSGHADIS 300
Query: 263 -----------GPKVSGMN------------EVLCKHKDT-GKPFACGLCRSCYEEFMTI 298
K+ G N EVLC HK+ KP+A GLCRSCY++F+ +
Sbjct: 301 EKMNMEEFIVMADKLKGSNSYTNNGSNALSDEVLCVHKNECQKPYALGLCRSCYDDFVEL 360
Query: 299 SEGLEGGADPPAFQVAERERMVKASAEENS-----------------SFERESDSPFMSR 341
S GL+GG++PPAFQ AE+ERM KA+ EE S + E+ESD+ +
Sbjct: 361 SGGLDGGSNPPAFQSAEKERMEKATVEEGSDDCSAIGKFSQGLKPCNNTEKESDNVHVDA 420
Query: 342 VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG 401
+ E E+ G T + D K D T ASD S+N+SDIDD EVDG
Sbjct: 421 SETASFKEAEAKG------TADEQRGPDDDVNKVGADDLGTCASDDSENWSDIDDVEVDG 474
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
YLHNEEEKHYKKIIWEEMNREYLEEQAAK+AAAAAAK A EA+++NC E L+AA++LA A
Sbjct: 475 YLHNEEEKHYKKIIWEEMNREYLEEQAAKDAAAAAAKKAYEANFQNCSEDLKAAKDLAEA 534
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
AAAAVAKSRKE+Q+KRAAEAKN+ PAQTA EATR+ML KKRLSSKINYDVL+KLFD+S
Sbjct: 535 AAAAVAKSRKERQRKRAAEAKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFDES 592
>gi|296085890|emb|CBI31214.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 314/555 (56%), Positives = 390/555 (70%), Gaps = 40/555 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC++CAR R + LCC CGKV++ NFS + FVKNAAGQSQ+SGNFV+T+Q
Sbjct: 1 MVWCTNCARDCRTERLLNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S+Y ASRER + A+ ++ + NA+ + D I+ A FY IA+ RNFT+GRR EQV A
Sbjct: 61 SDYSASRERTLNDAYAEIGHIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+ KPFLLIDFS +L INVY LGAV+LQLC++L + + V K VDPS+F+H
Sbjct: 121 ACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIH 180
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+F L N V TA I+ASMKRDW+ TGRKPSGLCGAALY+SAL++GLK SK+DI
Sbjct: 181 RFAAGLPGETNMGVSKTALRIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDI 240
Query: 241 ---------------------------IEDFMARKKELHEGVAANLPNN-GPKVSGMNEV 272
IE+F + +EL + ++ +N G V G E+
Sbjct: 241 VKIVHICEATLTKRLIEFENTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGEL 300
Query: 273 LCKHKDTGK-PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS--- 328
LC+HK +GK PFA GLC CY EF+ +S GLEGG++PPAFQ AER+RM KA+AEEN+
Sbjct: 301 LCEHKGSGKPPFAHGLCEICYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSN 360
Query: 329 --SFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV-DATTEAS 385
++ S SP + + + EP+SIG + + AS + EG + G D A
Sbjct: 361 QIQLDKGSSSPDVCGNESSKLAEPKSIGA----SDKQASID-EGAPSDLHGADDENANAG 415
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D S++ SDIDD EVDGYLHNE+EK +KKIIWE MN+EYLEEQAAKEAAAAAAK A EAS+
Sbjct: 416 DESESLSDIDDVEVDGYLHNEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASF 475
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 505
K+ PEGL+AAQELAAA AAAVAKSRKE+QQKRAAEAKN+ PAQTA EATR+MLTKKRLSS
Sbjct: 476 KDNPEGLKAAQELAAATAAAVAKSRKERQQKRAAEAKNTVPAQTAAEATRQMLTKKRLSS 535
Query: 506 KINYDVLEKLFDDSV 520
KINYDVLEKLFDDSV
Sbjct: 536 KINYDVLEKLFDDSV 550
>gi|145338292|ref|NP_187547.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|110741698|dbj|BAE98795.1| putative transcription factor [Arabidopsis thaliana]
gi|332641235|gb|AEE74756.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 604
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 286/541 (52%), Positives = 362/541 (66%), Gaps = 39/541 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ +FSTE TFVKNAAGQSQ SGN VR++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D++ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQ
Sbjct: 61 SGITSSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + LLIDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFM 180
Query: 180 HKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct: 181 DRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 239 DIIE-------DFMARKKELHEGVAANLPNNGPK-------------VSGMNEVLCKHKD 278
DI+ R E + + NL N + S VLC H+D
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTDSGNLNVNELRERESHKRSFTMKPTSNKEAVLCMHQD 300
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 338
+ KPF GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN E
Sbjct: 301 S-KPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREEN-----EGGISS 354
Query: 339 MSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 398
++ +++ S K C S +GE D G + + SD SDNFSDI D E
Sbjct: 355 LNHDEQLYSDYCSMSKRGKQC-----SEKGEKDK---DGAEEHADTSDESDNFSDISDDE 406
Query: 399 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 458
V+GY++NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE A++
Sbjct: 407 VNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED---ARKA 463
Query: 459 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLSS INYDVLE LFD
Sbjct: 464 FEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDT 523
Query: 519 S 519
S
Sbjct: 524 S 524
>gi|297829466|ref|XP_002882615.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata]
gi|297328455|gb|EFH58874.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 292/550 (53%), Positives = 360/550 (65%), Gaps = 55/550 (10%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ NFSTE TFVKNAAGQSQ SGN V ++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFNFSTEVTFVKNAAGQSQASGNIVSSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D+ +++AL IG E +++ +A F+ AV +NFTKGRRTE VQ
Sbjct: 61 SGIPSSRERRYRIARDEFTNLRDALGIGDERADVIDMAVLFFKSAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + PFLLIDFS+YL ++VYELG+VYLQLC++LYIAD N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNVPFLLIDFSSYLRVSVYELGSVYLQLCEMLYIADNQNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TA I+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SKS
Sbjct: 181 DRFSNILLKGTHNKAVVKTAIAIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKS 240
Query: 239 DIIE-------DFMARKKELHEGVAANL-------------PNNGPKVSGMNEVLCKHKD 278
DI+ R E + NL + S VLC H+D
Sbjct: 241 DIVNIVHICEATLTKRLIEFGNTESGNLNVDEITERESHKRSSTMKPTSNKEAVLCMHQD 300
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERE- 333
+ KPF GLC+ CYE+F+ +S GL GG+DPPAFQ AE ERM KA+ EEN SS +
Sbjct: 301 S-KPFGYGLCKDCYEDFINVSGGLVGGSDPPAFQRAENERMEKAAREENEGGISSLNHDE 359
Query: 334 ---SDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDN 390
SD MS+ +K+ S + E + +G+ +H T SD SDN
Sbjct: 360 QLYSDYCSMSKSEKLFSEKGER------------NKDGDEEHADT---------SDESDN 398
Query: 391 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 450
FSDI D EVDGY++NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE
Sbjct: 399 FSDISDDEVDGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPE 458
Query: 451 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 510
A++ AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLS INYD
Sbjct: 459 D---ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAMEAVRRTLEKKRLSLVINYD 515
Query: 511 VLEKLFDDSV 520
VLE+LFD S
Sbjct: 516 VLEELFDTST 525
>gi|255569418|ref|XP_002525676.1| transcription initiation factor brf1, putative [Ricinus communis]
gi|223534976|gb|EEF36659.1| transcription initiation factor brf1, putative [Ricinus communis]
Length = 625
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 305/557 (54%), Positives = 384/557 (68%), Gaps = 49/557 (8%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MV+C SCAR V G+R D L C +CG+VL+ N+STEATFVKNA+GQSQ++G VR+I+
Sbjct: 1 MVFCKSCARDVPGYRDSDGILSCGKCGRVLKFDNYSTEATFVKNASGQSQMAGRIVRSIE 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
+SR+RL +KA+DDM +KN L++GE+ IV A +Y IAV RNFTKGRRTEQVQA
Sbjct: 61 GG-NSSRQRLYDKAYDDMIYIKNGLDMGENLAIVDQAMMYYRIAVERNFTKGRRTEQVQA 119
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+ KP+LLIDFSN+L IN+Y LGAV+LQLC+VL + + S K +DPSIF+H
Sbjct: 120 ACLYIACRENRKPYLLIDFSNFLRINIYVLGAVFLQLCKVLNLTEHSICQKLLDPSIFIH 179
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
K+T L G NK + D+A I+ASM RDW+ TGR+PSGL GAALY++AL+HGL S+ DI
Sbjct: 180 KYTASLSGGKNKDISDSALTIIASMNRDWMQTGRRPSGLWGAALYIAALSHGLTCSRKDI 239
Query: 241 ---------------------------IEDFMARKKELHEGVAANLPNNGPKVSGMNEVL 273
IE+ A+ +EL E + + N K S E+L
Sbjct: 240 LKLVHVCDATLSKRLVEFENTESGSLTIEEINAKAEELRES-STDQSNFVLKGSSSKELL 298
Query: 274 CKHKDTGK-PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS--- 329
C+HK T + P+A GLC+ CYE F+ G +GG+DPPAFQ AER R SA N++
Sbjct: 299 CQHKGTSRIPYAYGLCKGCYEYFI----GFDGGSDPPAFQQAERRRKENLSAMNNNNDSN 354
Query: 330 --------FERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 381
FE+E +S R +++ S + ES G +++G G D +
Sbjct: 355 SVSTMPFLFEKELNSQHADRDEQLLSKKAESTG---EAALHLPADDG-GYSKLHDDDDMS 410
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 441
++A D SDNFSDIDD EVDGYLHNEEE +KKIIWEEMNREYLEEQAAKEA AAAAK A
Sbjct: 411 SKALDESDNFSDIDDAEVDGYLHNEEEAQFKKIIWEEMNREYLEEQAAKEAVAAAAKEAW 470
Query: 442 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 501
EA +K+CPE +QAA+EL AA AAA+AKS+KEKQQKRAAEAKNS PAQ+A EA R+MLTKK
Sbjct: 471 EAKFKDCPEEMQAARELEAAVAAALAKSKKEKQQKRAAEAKNSVPAQSASEAARQMLTKK 530
Query: 502 RLSSKINYDVLEKLFDD 518
RLSSKINYDVLEKLFD+
Sbjct: 531 RLSSKINYDVLEKLFDE 547
>gi|6478939|gb|AAF14044.1|AC011436_28 putative transcription factor [Arabidopsis thaliana]
Length = 600
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/541 (52%), Positives = 362/541 (66%), Gaps = 43/541 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ +FSTE TFVKNAAGQSQ SGN VR++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D++ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQ
Sbjct: 61 SGITSSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + LLIDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFM 180
Query: 180 HKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct: 181 DRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 239 DIIE-------DFMARKKELHEGVAANLPNNGPK-------------VSGMNEVLCKHKD 278
DI+ R E + + NL N + S VLC H+D
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTDSGNLNVNELRERESHKRSFTMKPTSNKEAVLCMHQD 300
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 338
+ KPF GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN E
Sbjct: 301 S-KPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREEN-----EGGISS 354
Query: 339 MSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 398
++ +++ + + C + +GE D G + + SD SDNFSDI D E
Sbjct: 355 LNHDEQLY-----HLRIYLGCVAE----KGEKDK---DGAEEHADTSDESDNFSDISDDE 402
Query: 399 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 458
V+GY++NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE A++
Sbjct: 403 VNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED---ARKA 459
Query: 459 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLSS INYDVLE LFD
Sbjct: 460 FEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDT 519
Query: 519 S 519
S
Sbjct: 520 S 520
>gi|297829468|ref|XP_002882616.1| hypothetical protein ARALYDRAFT_317739 [Arabidopsis lyrata subsp.
lyrata]
gi|297328456|gb|EFH58875.1| hypothetical protein ARALYDRAFT_317739 [Arabidopsis lyrata subsp.
lyrata]
Length = 1245
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 289/567 (50%), Positives = 356/567 (62%), Gaps = 61/567 (10%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ NFSTE TFVKNAAGQSQ SGN V ++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFNFSTEVTFVKNAAGQSQASGNIVSSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D+ +++AL IG E +++ +A F+ AV +NFTKGRRTE VQ
Sbjct: 61 SGIPSSRERRYRIARDEFTNLRDALGIGDERADVIDMAVLFFKSAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + PFLLIDFS+YL ++VYELG+VYLQLC++LYIAD N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNVPFLLIDFSSYLRVSVYELGSVYLQLCEMLYIADNQNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TA I+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SKS
Sbjct: 181 DRFSNILLKGTHNKAVVKTAIAIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKS 240
Query: 239 DIIE-------DFMARKKELHEGVAANL-------------PNNGPKVSGMNEVLCKHKD 278
DI+ R E + NL + S VLC H+D
Sbjct: 241 DIVNIVHICEATLTKRLIEFGNTESGNLNVDEITERESHKRSSTMKPTSNKEAVLCMHQD 300
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERES 334
+ KPF GLC+ CYE+F+ +S GL GG+DPPAFQ AE ERM KA+ EEN SS
Sbjct: 301 S-KPFGYGLCKDCYEDFINVSGGLVGGSDPPAFQRAENERMEKAAREENEGGISSLNH-- 357
Query: 335 DSPFMSRVDKVQSPEP----------------------ESIGVPKNCTTQTASNEGEGDH 372
D + K+ E E + + C + +GD
Sbjct: 358 DEQLYDLILKISCAELLTVRLLQYEQKRKTIFCSSLSFERLRIYLCCVAEKGERNKDGD- 416
Query: 373 TKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEA 432
+ + SD SDNFSDI D EVDGY++NEEE HYK I W EMN++YLEEQAAKEA
Sbjct: 417 ------EEHADTSDESDNFSDISDDEVDGYINNEEETHYKTITWTEMNKDYLEEQAAKEA 470
Query: 433 AAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE 492
A AA AL+AS NCPE A++ AA A AKSRKEKQQK+A EAKN+ P TA+E
Sbjct: 471 ALKAASEALKASNSNCPED---ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAME 527
Query: 493 ATRRMLTKKRLSSKINYDVLEKLFDDS 519
A RR L KKRLS INYDVLE+LFD S
Sbjct: 528 AVRRTLEKKRLSLVINYDVLEELFDTS 554
>gi|224106357|ref|XP_002314140.1| predicted protein [Populus trichocarpa]
gi|222850548|gb|EEE88095.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/519 (53%), Positives = 343/519 (66%), Gaps = 53/519 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C RCGKVLE S+EA+FV+ +G+S ++G+FVR+++SE ASRERL E+A DDM +K
Sbjct: 2 CSRCGKVLEFSYLSSEASFVQTRSGESHVAGSFVRSVESE-NASRERLYERARDDMLNIK 60
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
N L +GE+ IV+ A +Y IAV RNFT+GRRT+QVQA+CLY+ACR+ KP+LLIDFS Y
Sbjct: 61 NGLGMGENLGIVNQAMVYYRIAVERNFTRGRRTDQVQAACLYIACRENRKPYLLIDFSIY 120
Query: 143 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDIL 202
L IN+Y LGAV+LQLC+VL + + + K DPSIF+HK+T L G NK++ D A I+
Sbjct: 121 LQINIYVLGAVFLQLCKVLNLTEHAICQKLHDPSIFIHKYTASLSGGKNKEISDDALTII 180
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA------ 256
ASM WI TGR PS L GAALY+SAL+HGL SKSDI+ K L + +
Sbjct: 181 ASMNYHWIQTGRTPSALWGAALYISALSHGLNCSKSDILRLVHVCGKTLSKRLVEFENTE 240
Query: 257 -----------ANLP-NNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYEEFMTISEGLE 303
++LP N + S E+LC+HK T +P F GLC+ CY I G +
Sbjct: 241 SGSLTVEELKESSLPRRNFGEPSSSKELLCQHKGTNRPSFGFGLCKDCY----AIVIGFD 296
Query: 304 GGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQT 363
GG DPPAFQ AE +RM K+S N SDS + T
Sbjct: 297 GGTDPPAFQNAESQRMKKSSIRHNV-----SDSNLV-----------------------T 328
Query: 364 ASNEGEGDHTKTPGV-DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNRE 422
A+ D K GV D +++A D SD FSDIDD EVD YLHNEEEK YKKIIWEEMNRE
Sbjct: 329 ATGHLANDFDKLHGVGDMSSKAFDESDGFSDIDDAEVDSYLHNEEEKRYKKIIWEEMNRE 388
Query: 423 YLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAK 482
YL+EQAAKEAAAA K A E ++KNCPE LQAA++L AA A +AKS+KE QQKRA+EA+
Sbjct: 389 YLQEQAAKEAAAATLKKAWEENFKNCPEDLQAAKKLDAAVKADLAKSKKETQQKRASEAR 448
Query: 483 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVC 521
N PA++A EA RMLTKKRL SKINYDVLEKLF+DSVC
Sbjct: 449 NLAPAKSAAEAVHRMLTKKRLGSKINYDVLEKLFEDSVC 487
>gi|359481012|ref|XP_002269372.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Vitis
vinifera]
Length = 529
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/506 (53%), Positives = 343/506 (67%), Gaps = 40/506 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC++CAR R + LCC CGKV++ NFS + FVKNAAGQSQ+SGNFV+T+Q
Sbjct: 1 MVWCTNCARDCRTERLLNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S+Y ASRER + A+ ++ + NA+ + D I+ A FY IA+ RNFT+GRR EQV A
Sbjct: 61 SDYSASRERTLNDAYAEIGHIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+ KPFLLIDFS +L INVY LGAV+LQLC++L + + V K VDPS+F+H
Sbjct: 121 ACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIH 180
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+F L N V TA I+ASMKRDW+ TGRKPSGLCGAALY+SAL++GLK SK+DI
Sbjct: 181 RFAAGLPGETNMGVSKTALRIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDI 240
Query: 241 ---------------------------IEDFMARKKELHEGVAANLPNN-GPKVSGMNEV 272
IE+F + +EL + ++ +N G V G E+
Sbjct: 241 VKIVHICEATLTKRLIEFENTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGEL 300
Query: 273 LCKHKDTGK-PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS--- 328
LC+HK +GK PFA GLC CY EF+ +S GLEGG++PPAFQ AER+RM KA+AEEN+
Sbjct: 301 LCEHKGSGKPPFAHGLCEICYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSN 360
Query: 329 --SFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV-DATTEAS 385
++ S SP + + + EP+SIG + + AS + EG + G D A
Sbjct: 361 QIQLDKGSSSPDVCGNESSKLAEPKSIGA----SDKQASID-EGAPSDLHGADDENANAG 415
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D S++ SDIDD EVDGYLHNE+EK +KKIIWE MN+EYLEEQAAKEAAAAAAK A EAS+
Sbjct: 416 DESESLSDIDDVEVDGYLHNEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASF 475
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRK 471
K+ PEGL+AAQELAAA AAAVAKSRK
Sbjct: 476 KDNPEGLKAAQELAAATAAAVAKSRK 501
>gi|297842649|ref|XP_002889206.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
gi|297335047|gb|EFH65465.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
Length = 574
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/556 (46%), Positives = 341/556 (61%), Gaps = 76/556 (13%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC CA++V G RP+D L CD CG++LE+ NFST+ TFVKNAAGQSQ SGN V +++
Sbjct: 1 MVWCKHCAKNVPGIRPFDGGLACDLCGRILENFNFSTDVTFVKNAAGQSQASGNIVTSVK 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D++R +K+AL IG E D+++ +A F+ +A +NFTKGRRTE VQ
Sbjct: 61 SGLSSSRERRKRIARDELRNLKDALGIGDERDDVIVMAAEFFEMATDQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL CR+K PFLLIDFS+YL ++VYELG+VYLQLC++LY+ N + VDPSIF+
Sbjct: 121 SSCLYLTCREKKIPFLLIDFSSYLRVSVYELGSVYLQLCEMLYLVQNENYEELVDPSIFI 180
Query: 180 HKFTDRLLPGGNK-------KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+F + LL G + KV TA +I++SMKRDW+ TGRKPSG+CGAA+Y++AL+HG
Sbjct: 181 PRFMNNLLKGAHNITKNVWDKVFGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALSHG 240
Query: 233 LKFSKSDIIE-------DFMARKKELHEGVAANL--------------------PNNGPK 265
+ S++DI + R E A +L PN+
Sbjct: 241 IMCSRADIAKIVHMCEATITKRLNEFANTKAGSLTVDELDKSEPISRKEAFTPRPNSDEG 300
Query: 266 VSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAE 325
V V C+HKD K F GLC+SC+++F+ IS G+ GG+DPPAFQ AE+ERM KA+ E
Sbjct: 301 V-----VNCQHKDL-KRFGYGLCKSCHDDFIKISGGIVGGSDPPAFQRAEKERMEKAARE 354
Query: 326 ENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEAS 385
EN + +S+ +K Q PE +G+G+ G + E S
Sbjct: 355 ENEGGVGSDEQVNVSKGEK-QCPE-----------------KGQGEKY---GGEEHAEYS 393
Query: 386 DGSDNF--SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 443
D ++ SD DD EVD L E+E K W NREY++EQA KEAA AA
Sbjct: 394 DDDESGICSDDDDSEVDHILLGEDETLLKTTAWNLQNREYVKEQAEKEAALKAA------ 447
Query: 444 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 503
NCPE A+ L A+ AAVAKSRKEK+QKRA E KN+ P T +EA RR L +KRL
Sbjct: 448 ---NCPED---ARNLVEASKAAVAKSRKEKRQKRAEEEKNAPPPATTMEAVRRTLERKRL 501
Query: 504 SSKINYDVLEKLFDDS 519
INYDVLE+LFD S
Sbjct: 502 GGLINYDVLEELFDTS 517
>gi|356560345|ref|XP_003548453.1| PREDICTED: uncharacterized protein LOC100817609 [Glycine max]
Length = 604
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 268/558 (48%), Positives = 353/558 (63%), Gaps = 76/558 (13%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MV+CS CA++V G R D LCC CG+VLED+ F+ E +FVKNAAGQS+LSGN+VRT+Q
Sbjct: 1 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQSKLSGNYVRTVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQ 117
SEY SR+R +++A+D+++ + + +G +DE H+A++ FY IA+ RNFT+GR++EQ
Sbjct: 61 SEYSESRQRTLDRAYDEIKYL--SFGLGVNDE--HMAEQALTFYKIALERNFTRGRKSEQ 116
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
V A+CLY+A R Y LGAV+LQLCQVL + + V K VDPS+
Sbjct: 117 VHAACLYIAFR-------------------YVLGAVFLQLCQVLRLGEHPIVQKPVDPSL 157
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
F+H++T LL G+K V DTA I+ASMKRDW+ TGRKPSGLCGAALY+SAL HG+K SK
Sbjct: 158 FIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSK 217
Query: 238 SDI---------------------------IEDFMARKKELHEGVAANLPNNGPKVSGMN 270
DI +E+ KE HE +P G K
Sbjct: 218 PDILKIVHVCEATLTKRLVEFEDTESSSLTVEELNTMAKE-HEKNPTIMPEGGLKGCISK 276
Query: 271 EVLCKHK-DTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA----SA 324
++LC+HK D+G FA GLC +CY++F +S GL GG DPPAFQ AERER+ K S
Sbjct: 277 DLLCEHKEDSGVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERLKKTLPEESV 336
Query: 325 EENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEA 384
+E + S+ F S + + + PESIG A+ +G+ D +
Sbjct: 337 DEACALANASNDQFKSHKEDLPAYVPESIGAN---VEHEATKDGKYD---------DSHR 384
Query: 385 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 444
D S+ SDIDD EVD Y+H+EE KH KKI+WE NREYLEEQAAKEAAAAA K A EA
Sbjct: 385 EDESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAANKKAFEAK 444
Query: 445 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR-- 502
++NC E + AA+ELAA++ AVAKSRKE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 445 FENCSEDILAARELAASSIEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNL 504
Query: 503 --LSSKINYDVLEKLFDD 518
L SK+N+++L +LFD+
Sbjct: 505 QGLKSKVNFELLNELFDE 522
>gi|297814368|ref|XP_002875067.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
gi|297320905|gb|EFH51326.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
Length = 532
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 248/550 (45%), Positives = 316/550 (57%), Gaps = 110/550 (20%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ CA++V G RP+D L CD CG++LE+ NFS E TFVKNAAGQSQ SGN V ++Q
Sbjct: 1 MVWCNHCAKNVPGIRPFDGGLACDLCGRILENFNFSDEVTFVKNAAGQSQASGNIVTSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SR R A D+ R +K+AL IG E D+++ A RF+ +A +NFTKGRRTE VQ
Sbjct: 61 SGIPSSRVRRFRIARDEFRNLKDALGIGDERDDVIDTAARFFEMATEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL CR+K PFLLIDFS+YL ++VYELG+VYLQLC++ Y+ N + VDPSIF+
Sbjct: 121 SSCLYLTCREKKIPFLLIDFSSYLRVSVYELGSVYLQLCEMFYLVQNGNYEELVDPSIFI 180
Query: 180 HKFTDRLLPGGNK-------KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+F + LL G + KV TA +I++SMKRDW+ TGRKPSG+CGAA+Y++AL+HG
Sbjct: 181 PQFMNNLLKGAHNIAKNVLDKVLGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALSHG 240
Query: 233 LKFSKSDIIE-------DFMARKKELHEGVAANL---------------PNNGPKVSGMN 270
+ S++DI + R E AA+L P + S
Sbjct: 241 IMCSRADIAKIVHMCEATITKRLDEFANTEAASLTVDELDKSENILREKPFSPRPNSDEG 300
Query: 271 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF 330
V CKHKD K F GLC+SC++ FM IS G+ GG+DPPAFQ AE+ERM KA+ EEN
Sbjct: 301 VVNCKHKDL-KRFGFGLCKSCHDAFMKISGGVVGGSDPPAFQRAEKERMEKAAREEN--- 356
Query: 331 ERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPG-VDATTEASDGSD 389
EG K+ G D EA D S
Sbjct: 357 --------------------------------------EGAIEKSEGETDWDAEAPDESG 378
Query: 390 NFSDID-DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
N SD+D D EVDG NE+EK KI WE NR+YLE LE
Sbjct: 379 NLSDLDGDAEVDGCFLNEDEKLMTKISWELDNRDYLE-------------VNLE------ 419
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
AVAKSRKEK+QKRA EAKN+ P TA+EA RR++ +KRLS IN
Sbjct: 420 ----------------AVAKSRKEKRQKRAEEAKNAPPPATAMEAVRRIVKRKRLSG-IN 462
Query: 509 YDVLEKLFDD 518
D L++L D+
Sbjct: 463 CDFLDELLDN 472
>gi|115463095|ref|NP_001055147.1| Os05g0305100 [Oryza sativa Japonica Group]
gi|113578698|dbj|BAF17061.1| Os05g0305100 [Oryza sativa Japonica Group]
gi|222631042|gb|EEE63174.1| hypothetical protein OsJ_17983 [Oryza sativa Japonica Group]
Length = 574
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 238/550 (43%), Positives = 334/550 (60%), Gaps = 65/550 (11%)
Query: 2 VWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
++CS C + + P + CC CGKVL+D + E TF K A GQ++L+G+ + +I+
Sbjct: 1 MYCSHCQDNCPVVKDPDKNYTCCGLCGKVLDDQVYDGEPTFQKGADGQARLAGSILSSIE 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S S ER + K +++RQ+ ++L++ D I+ +A R+Y +AV +NFT+GRRT V A
Sbjct: 61 SGNSVSHERTINKGREEIRQIVSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACRQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ + K +DPS+F+H
Sbjct: 121 ACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLLLAEHPVIQKLIDPSLFIH 180
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+FT+RLL + V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DI
Sbjct: 181 RFTERLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYDYTKADI 240
Query: 241 ---------------------------IEDFMARKKELHEGVAANLPNNGPKVSGMNEVL 273
IE+F+A+ E V P +G EVL
Sbjct: 241 VAVVHVCEATLTKRLIEFENTDSGSLTIEEFLAKADE-QVLVTKISPKSG-------EVL 292
Query: 274 CKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE 333
CKHKD + FA GLC CY +FM +S GLEGG+DPPAFQ AE++R+ A + ++ +E
Sbjct: 293 CKHKDKAEHFAHGLCEKCYNKFMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKE 352
Query: 334 S--DSPFMSRVDKVQ---SPEPESIGVPKNCTTQTASNEGEGDHTKTP-GVDATTEASDG 387
+ +S +R V+ + P++I K+ T + G+ T+ P G +A +G
Sbjct: 353 AALESVCEARESDVENNITTPPKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDKADEG 412
Query: 388 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 447
++ SDIDD EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAK A AA
Sbjct: 413 PESLSDIDDAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKAALAA------------ 460
Query: 448 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKI 507
AA V + K K+++ + KN+ PAQT EAT+ ML +KRL SKI
Sbjct: 461 -----------ELAARGVVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKI 509
Query: 508 NYDVLEKLFD 517
N + + KL++
Sbjct: 510 NDEAVNKLYN 519
>gi|242088663|ref|XP_002440164.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
gi|241945449|gb|EES18594.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
Length = 579
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 249/554 (44%), Positives = 332/554 (59%), Gaps = 69/554 (12%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK G+S+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTEEPTFVKGNTGESRLAGSILASI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y S +R ++K D++RQ+ N LN+ + IV A RFY +AV RNFT+GRRT V
Sbjct: 61 ESGYSISHQRTLDKGKDEIRQIVNNLNVSGGETIVSKAYRFYELAVDRNFTRGRRTTHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS+YL I+VY LGAV+LQLCQVL +AD V K VDPS+F+
Sbjct: 121 AACLYIACRQTKKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLADHPVVQKLVDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT RLL + V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+D
Sbjct: 181 HRFTHRLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGKNYTKAD 240
Query: 240 I---------------------------IEDFMARKKELHEGVAANLPNNGPKVSGMNEV 272
I IE+F+A E +E +P + PK SG E+
Sbjct: 241 IVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADEYNE---EPVPKHSPK-SG--EI 294
Query: 273 LCKHKDTG--KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF 330
LCKHK+ + FA GLC CY +F +S GLEGGADPPAFQ AE++R+ A E ++
Sbjct: 295 LCKHKNKKGFEHFAHGLCEKCYNKFTKLSGGLEGGADPPAFQRAEKKRLEAAKRAEEAAT 354
Query: 331 ERESDSPFMSRVDKVQSPEPESIGVP-KNCTTQTASNEGEGD--HTKTPGVDA-----TT 382
+E + + Q+ E ES P K + +S G G+ + P D
Sbjct: 355 VKE--AALEESLCNTQNSEVESTITPRKGLSGHKSSTVGSGELINDSVPPKDPEEGGENC 412
Query: 383 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 442
E + S++ SDIDD EVD YLHNEEEK YKKIIWEEMN+EYLEEQAAKEA AA
Sbjct: 413 EGNADSESLSDIDDAEVDWYLHNEEEKQYKKIIWEEMNKEYLEEQAAKEALAA------- 465
Query: 443 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 502
AA V + K+K+++R + K+S PA+T EAT ML +K
Sbjct: 466 ----------------ELAARGIVVEEGKKKKRRRNEDTKSSTPAETPAEATYNMLKRKG 509
Query: 503 LSSKINYDVLEKLF 516
L SKIN + +L+
Sbjct: 510 LGSKINEGAVGELY 523
>gi|356570349|ref|XP_003553352.1| PREDICTED: uncharacterized protein LOC100789154 [Glycine max]
Length = 639
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 264/595 (44%), Positives = 348/595 (58%), Gaps = 112/595 (18%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQ------------ 48
MV+CS CA++V G R D LCC CG+VLED+ F+ E +FVKNAAGQ
Sbjct: 1 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQRKRLELLLLRID 60
Query: 49 ----------------------------SQLSGNFVRTIQSEYGASRERLMEKAFDDMRQ 80
S+LSGN+VRT+QSEY SR+R +++A+D+++
Sbjct: 61 GDLDYLRFKFDCGYGLREKGRICGSHHESKLSGNYVRTVQSEYSESRQRTLDRAYDEIKY 120
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+ L + + + + A FY IA+ RNFT+GR++EQV A+CLY+A R
Sbjct: 121 LSFGLGVND-EHMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFR------------ 167
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
Y LGAV+LQLCQVL + + V K VDPS+F+H++T LL G+K V DTA
Sbjct: 168 -------YVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALA 220
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI-------------------- 240
I+ASMKRDW+ TGRKPSGLCGAALY+SAL HG+K SK DI
Sbjct: 221 IVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVEFED 280
Query: 241 -------IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHK-DTG-KPFACGLCRSC 291
+E+ KE HE + +P G K ++LC+HK D+G FA GLC +C
Sbjct: 281 TESSSLTVEELNTMAKE-HEKNSMIMPGGGLKGCISKDLLCEHKEDSGVTHFALGLCEAC 339
Query: 292 YEEFMTISEGLEGGADPPAFQVAERERMVKA----SAEENSSFERESDSPFMSRVDKVQS 347
Y++F +S GL GG DPPAFQ AERER K S +E + S+ F S + + +
Sbjct: 340 YKDFDKLSGGLGGGLDPPAFQRAERERFKKTLPEESVDEACALANASNDQFKSHKEDLHA 399
Query: 348 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEE 407
PE V A+ +G+ D + D S+ SDIDD EVD Y+H+EE
Sbjct: 400 YVPERANV-----EHEATKDGKYD---------DSHREDESETLSDIDDEEVDLYIHDEE 445
Query: 408 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 467
KH KK++WE NREYLEEQAAKEAAAAA K A EA+++NC E L AA+ELAA++A AVA
Sbjct: 446 GKHIKKLLWETANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLAARELAASSAEAVA 505
Query: 468 KSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR----LSSKINYDVLEKLFDD 518
KSRKE +QKRA EAKN+ PAQ+A EA +M KKR L SK+N+++L +LFD+
Sbjct: 506 KSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDE 560
>gi|302798535|ref|XP_002981027.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
gi|300151081|gb|EFJ17728.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
Length = 636
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/588 (40%), Positives = 340/588 (57%), Gaps = 94/588 (15%)
Query: 1 MVWCSSCAR-HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MVWCS C + + H D +CC CG+VL+D+ FS+E TF K+A+GQSQ GN V+
Sbjct: 1 MVWCSYCGKDQIAEHN--DGFICCTGCGRVLDDNVFSSEPTFAKSASGQSQFVGNIVK-- 56
Query: 60 QSEYGA------------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFY 101
QS+YG S +R ++K ++R + ++L++G D+IV A R Y
Sbjct: 57 QSQYGTYARIVDDGTGTVSGYQSNSHQRTLDKGRQEIRNIASSLSVGGGDDIVGSAHRIY 116
Query: 102 GIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161
+AV +NFTKGRRT QV A+CLY+ CRQ +KP+LLIDFS+ L +VY LGAV+LQLC +L
Sbjct: 117 VLAVEKNFTKGRRTSQVAAACLYIVCRQGNKPYLLIDFSDCLQTSVYLLGAVFLQLCTLL 176
Query: 162 YIADESNVLKQVDPSIFLHKFTDRLL----PGGNKK----VCDTARDILASMKRDWITTG 213
+ V K VDPS+F+H+FTDRLL PG + K + +TA I+ASMK+DWI TG
Sbjct: 177 RLDQHPMVQKPVDPSLFIHRFTDRLLHRIAPGTSSKNQFAIANTALRIVASMKQDWIQTG 236
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDI---------------------------IEDFMA 246
R+PSG+CGAAL +S HGL+ S +D+ E+F A
Sbjct: 237 RRPSGICGAALLLSTRIHGLECSTADVESVVYVCKATITKRLVEFSNTEAGSLTPEEFEA 296
Query: 247 ----RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEG 301
R+KE+ ++ NNG + E+LC+HKD+G + +A GLC++CY++F+ IS G
Sbjct: 297 KAKQREKEMLSVSQTDIVNNGV----IKEILCEHKDSGAQHYAHGLCKNCYDDFVKISGG 352
Query: 302 LEGGADPPAFQVA--ERERMVK---------ASAEENSSFERESDSPFMSR-VDKVQSPE 349
L+GG+ PPAFQ A ERER++K A ++E+ + SP + + K E
Sbjct: 353 LQGGSAPPAFQRAQKERERLLKNKKRKLTAEAISDEDEDLTCTNSSPVAEKAIKKKLEQE 412
Query: 350 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 409
S + T ++E + + VD D ++ SDIDD E+ YL+ E+E
Sbjct: 413 EHSYFDADDVTESCVTHETKAEKRYEDSVD------DEPESLSDIDDVELTTYLNTEDEI 466
Query: 410 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 469
K I+W EMN+EY++EQ AKEAA A ++ A + + A AAA V S
Sbjct: 467 RLKTIVWTEMNKEYIQEQEAKEAALKAQAESMAA--------VSTSGTAAEIAAATVVMS 518
Query: 470 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
RK ++ K A N PA++A EATR+ML KKRLSSK+NY VLEK+F+
Sbjct: 519 RKARKHKHGDTA-NCKPAESAAEATRQMLEKKRLSSKLNYSVLEKMFN 565
>gi|145361010|ref|NP_182035.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|330255413|gb|AEC10507.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 557
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 242/548 (44%), Positives = 315/548 (57%), Gaps = 92/548 (16%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC C ++V G RPYD+ L CD CG++LE+ NFSTE TFVKNAAGQSQ SGN ++++Q
Sbjct: 1 MVWCKHCGKNVPGIRPYDAALSCDLCGRILENFNFSTEVTFVKNAAGQSQASGNILKSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER++ KA D++ +++AL IG+ D+++ +A F+ IA+ NFTKGR E V
Sbjct: 61 SGMSSSRERIIRKATDELMNLRDALGIGDDRDDVIVMASNFFRIALDHNFTKGRSKELVF 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL CRQ LLIDFS+YL ++VY+LG+VYLQLC +LYI + N K VDPSIF+
Sbjct: 121 SSCLYLTCRQFKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G N K+ TA I+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct: 181 PRFSNMLLKGAHNNKLVLTATHIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 239 DIIE-------DFMARKKELHEGVAANLPNN------------------GPKVSGMNEVL 273
DI+ R E + AA+L + P VL
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTEAASLTADELSKTEREKETAALRSKRKPNFYKEGVVL 300
Query: 274 CKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEENSSFER 332
C H+D KP GLC SCY+EFMT+S GLEGG+DPPAFQ AE+ERM KAS+EEN
Sbjct: 301 CMHQDC-KPVDYGLCESCYDEFMTVSGGLEGGSDPPAFQRAEKERMEEKASSEEND---- 355
Query: 333 ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 392
K +D SD S S
Sbjct: 356 -----------------------------------------KQVNLDG---HSDESSTLS 371
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D+DD E+D Y EE KI ++ N Y E++AAK+AA A
Sbjct: 372 DVDDRELDCYFRTPEEVRLVKIFFDHENPGYDEKEAAKKAAGLNA--------------C 417
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 512
A + A+ AA AKSRKEK+Q+RA E KN+ P T +EA M+ +K+ IN D L
Sbjct: 418 NNASNIFEASKAAAAKSRKEKRQQRAEEEKNAPPPATGIEAVDSMVKRKKFRD-INCDYL 476
Query: 513 EKLFDDSV 520
E+LFD SV
Sbjct: 477 EELFDASV 484
>gi|357508865|ref|XP_003624721.1| Transcription factor IIIB 90 kDa subunit [Medicago truncatula]
gi|355499736|gb|AES80939.1| Transcription factor IIIB 90 kDa subunit [Medicago truncatula]
Length = 608
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 248/578 (42%), Positives = 330/578 (57%), Gaps = 91/578 (15%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MV+C C ++V + L C CGKVLED + E TF KN+AGQS++SGN V+ ++
Sbjct: 1 MVYCDHCVKNVRAELHEECYLVCTSCGKVLEDQILTEEPTFTKNSAGQSKISGNLVKAVE 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
E ASR+R + +A +M + +L + E D +V A+ FY IA+A+NFT+GR++EQV+A
Sbjct: 61 -ELDASRKRTLYRASKEMEYLSLSLGVSEGD-VVRQARAFYEIALAKNFTRGRKSEQVRA 118
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLYLA RQ KP+ LI+FSN L INVYELG VYLQLC+VL + + V K +DPS++LH
Sbjct: 119 ACLYLAFRQNKKPYFLIEFSNNLRINVYELGGVYLQLCEVLRLDNHPIVKKPIDPSLYLH 178
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
K+T LL N V TA +I+A M RDW+ TGRKP GL AALY SA HG K SK DI
Sbjct: 179 KYTSNLLGHRNGVVSATALNIIAQMNRDWLQTGRKPGGLFAAALYTSANAHGHKVSKRDI 238
Query: 241 IEDFMARKKELHEGVAANLPNN------GPKV---------SGMNEVLCKHK-------- 277
+ + L V L + P + MN+ L +++
Sbjct: 239 GLILLVSSRALSHSVPHRLSSQTSAAIPSPVILLRLFHICEQTMNKRLIEYEMTDSSNLT 298
Query: 278 -------------------------DTGKPFAC------------GLCRSCYEEFMTISE 300
T P C GLC +CY++F +S
Sbjct: 299 VEELNAMAKENEKNPVVMPNSKFNGSTSTPLVCEHKEMEVPHFALGLCETCYKDFDKVSG 358
Query: 301 GLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCT 360
G GG DPPAFQ AE+ER+ K +++EN+ + S+S + + P S+
Sbjct: 359 GFGGGLDPPAFQRAEQERVKKTNSKENADVVKASNSACKGQKEDF----PASV------- 407
Query: 361 TQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMN 420
E D D +TEA D S NFSDIDD EVD +L NEEEK Y+KIIWE N
Sbjct: 408 -------LERD-------DTSTEAQDESGNFSDIDDQEVDAFLFNEEEKSYRKIIWENQN 453
Query: 421 REYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE 480
REYLEEQAAKEAAAAA K EA+ +NCP ++EL + A+VAK+RKEK Q+RA +
Sbjct: 454 REYLEEQAAKEAAAAAQKKIYEANLENCP---VESRELYESTTASVAKTRKEK-QRRAQQ 509
Query: 481 AKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
AK SGPAQ+A+EA +M+ +K LS+K+N D KLF+D
Sbjct: 510 AKKSGPAQSAVEAACQMVKRKGLSNKVNMDNFAKLFED 547
>gi|357160321|ref|XP_003578728.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
[Brachypodium distachyon]
Length = 580
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 246/555 (44%), Positives = 329/555 (59%), Gaps = 71/555 (12%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M +C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQSQ +GN + +I
Sbjct: 1 MFYCTHCADYCPYIKDPDKGYICCGTCGKVLDQDIYNAEPTFVKDGLGQSQRAGNVISSI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S S ER + K D++ Q+ +L++G D I+ +A +FY +AV NFT+GRRT QV
Sbjct: 61 ESGSSLSHERTLMKGRDEIWQIVTSLHVGGGDTIIDMAHKFYTLAVDHNFTRGRRTTQVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS+YL I+VY LGAV+LQLCQVL +A+ V K +DPS+F+
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDYLKISVYVLGAVFLQLCQVLLLAEHPIVQKLIDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT+RLL + V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++KSD
Sbjct: 181 HRFTERLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYNYTKSD 240
Query: 240 I---------------------------IEDFMARKKELHEGVAANLPNNGP-KVSGMNE 271
I IEDF+A+ E P + P + SG E
Sbjct: 241 IVGVVHICEATLTKRLIEFENTDSGSLTIEDFLAKADEEQ-------PVSKPSRKSG--E 291
Query: 272 VLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF 330
VLCKHKD + FA GLC CY +F+ +S GLEGGADPPAFQ AER+R+ A E ++
Sbjct: 292 VLCKHKDKDTEHFAHGLCEKCYNKFIKMSGGLEGGADPPAFQRAERQRLEAAKKSEEAAA 351
Query: 331 ER-----ESDSPFMSR--VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTE 383
+ ES+ + D + S + IG K+ T + N + +K P V
Sbjct: 352 LKEAALGESNCEIQNSDVEDNIISLKKGPIG-DKSSTIPSEQNANDNIASKDPEVGGENS 410
Query: 384 ASDGS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 442
D ++FSDIDD EVDGYLHNEEE HYKKIIWEEMN+EY+EEQAAKEA AA
Sbjct: 411 KPDADPESFSDIDDVEVDGYLHNEEETHYKKIIWEEMNKEYIEEQAAKEALAA------- 463
Query: 443 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 502
AA ++K+++R + KN PA+T EAT ML +K
Sbjct: 464 ----------------ELAARGVGVGGGQQKKRRRNEDTKNLSPAETPAEATYNMLKRKG 507
Query: 503 LSSKINYDVLEKLFD 517
L SKIN + + L++
Sbjct: 508 LGSKINVEAVGGLYN 522
>gi|226492330|ref|NP_001141990.1| uncharacterized protein LOC100274140 [Zea mays]
gi|194706710|gb|ACF87439.1| unknown [Zea mays]
gi|413946300|gb|AFW78949.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 580
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/554 (44%), Positives = 331/554 (59%), Gaps = 71/554 (12%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y SR+R ++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V
Sbjct: 61 ESGYSMSRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT LL N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+D
Sbjct: 181 HRFTKLLLGRRNNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKAD 240
Query: 240 I---------------------------IEDFMARKKELH-EGVAANLPNNGPKVSGMNE 271
I IE+F+A E + E V+ + P +G E
Sbjct: 241 IVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------E 293
Query: 272 VLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF 330
+LCKHKD G + FA GLC CY +F +S GLEGG+DPPAFQ AE++R+ A E ++
Sbjct: 294 ILCKHKDKGFEHFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKRLEAAKRAEEAAA 353
Query: 331 ERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNE--GEG---DHTKTPGVDATTEAS 385
+E+ + Q+ E ES P+ + S++ EG D + E
Sbjct: 354 AKEAAL--EESLCDTQNSEVESAMTPRKGLSGDKSSKMGSEGLINDSMPPKDPEEGGENC 411
Query: 386 DGS---DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 442
+G+ ++ SDIDD EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 412 EGNADPESLSDIDDAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA-------- 463
Query: 443 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 502
A AA + +K++KR K+S PA+T EAT ML +K
Sbjct: 464 ----------------AELAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKG 507
Query: 503 LSSKINYDVLEKLF 516
L SKIN +++L+
Sbjct: 508 LGSKINVGAVDELY 521
>gi|148909769|gb|ABR17974.1| unknown [Picea sitchensis]
Length = 746
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 265/640 (41%), Positives = 367/640 (57%), Gaps = 123/640 (19%)
Query: 1 MVWCSSCARHVTGHRP-YDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MVWCS C + R + +CC CG+VL+D+ +S++ TFVK A GQSQ SGNF++
Sbjct: 1 MVWCSYCGKDQPTERDDINGFICCTGCGRVLDDNIYSSDPTFVKTAGGQSQFSGNFIKDG 60
Query: 60 Q------------SEYG---ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
Q EYG S E+ +EK +++ + +L++ ++ V+ R Y IA
Sbjct: 61 QYSSYGRLGGDLVHEYGFKSDSHEKTLEKGREEIEIIAESLSVSGREDSVNAGHRLYIIA 120
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V RNFT+GRRT+QV A+CLY+ CRQ+ KPFLLIDFS+ L INVY LGAV+LQLC++L +
Sbjct: 121 VERNFTRGRRTKQVAAACLYIVCRQEQKPFLLIDFSDVLQINVYVLGAVFLQLCKLLRLE 180
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGNKK-----VCDTARDILASMKRDWITTGRKPSGL 219
+ K VDPS+F+H+F DRL+ + + +TA ILASMKRDW+ TGRKPSG+
Sbjct: 181 QHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSIANTALRILASMKRDWMQTGRKPSGV 240
Query: 220 CGAALYVSALTHGLKFSKSDI---------------------------IEDFMARKKELH 252
CGAALY+SAL+HG +K+D+ IE+F ++ KEL
Sbjct: 241 CGAALYISALSHGFGCTKADVVSIVHICEGTLTKRLIEFENTDSGSLTIEEFESKAKELE 300
Query: 253 EGV------AANLPNNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYEEFMTISEGLEGG 305
+ A N G + G+ ++LC+HKDTG FA GLC SCYEEF+ +S G++GG
Sbjct: 301 AEMQTIKVPAINAETKG--IKGITDLLCEHKDTGSAHFAHGLCHSCYEEFVKLSGGIQGG 358
Query: 306 ADPPA-------------------------------FQVA-------------ERERMV- 320
+ PPA +Q+ E+E+ +
Sbjct: 359 SAPPAFQRAEKQRKEDALHKKQDKLLFFDEEDEEDQYQIGTQKCFEDTARMETEKEKQLN 418
Query: 321 -KASAEENSSFERESDSPFMSRVDKVQ--------------SPEPES-IGVPKNCTTQTA 364
KA + N + + ++ +R + ++ SP +S IG +C ++
Sbjct: 419 QKAVQDGNPGSQEQENAEGSNRYENIKNLYRSTASKDGYADSPNGDSQIGAVGSCLSEAV 478
Query: 365 SN-EGEGD---HTKTPGVDATTEASDGS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM 419
+ E D T+T ++ + D + SDIDD EV+ YLHN+EE K +IW EM
Sbjct: 479 NGYRAEIDDWTQTQTQSINKVEDEMDEEIETLSDIDDEEVERYLHNKEEVRLKTLIWTEM 538
Query: 420 NREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA 479
N+EYLEEQAAKE A AAA+AA A+ EG A ELAAAAAAAVAK +K+KQ+KRA
Sbjct: 539 NKEYLEEQAAKEEAIAAAEAAHAAALAAAAEGAPDAVELAAAAAAAVAKLKKDKQRKRAE 598
Query: 480 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
E+KN PAQ+A EATR+MLTKK+LSSK+NYDVLEKLF+D+
Sbjct: 599 ESKNKVPAQSAAEATRQMLTKKKLSSKVNYDVLEKLFEDN 638
>gi|413948296|gb|AFW80945.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
gi|413948297|gb|AFW80946.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
Length = 588
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 243/564 (43%), Positives = 327/564 (57%), Gaps = 82/564 (14%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M++C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MIYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNTGQSRLAGSILASI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y S +R ++K D++RQ+ N L++ + +V A RFY +AV RNFT+GRRT V
Sbjct: 61 ESGYSISHQRTLDKGRDEIRQIVNNLHVSGGETVVSKAYRFYELAVDRNFTRGRRTSHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS+YL I+VY LGAV+LQLCQVL +AD V K VDPS+F+
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLADHPVVQKLVDPSLFI 180
Query: 180 HKFTDRLL---------PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
H+FT LL +++V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+
Sbjct: 181 HRFTKCLLGRRDNAVSDTAFSREVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALS 240
Query: 231 HGLKFSKSDI---------------------------IEDFMARKKELHEGVAANLPNNG 263
HG ++K+DI IE+F+A E +E A++
Sbjct: 241 HGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADEYNE---ASVSKYS 297
Query: 264 PKVSGMNEVLCKHKDTGKP---FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV 320
PK SG E+LCKHK GK FA GLC C+ +F +S GLEGGA+PPAFQ AE +R+
Sbjct: 298 PK-SG--EILCKHK--GKDFEHFAHGLCEKCFNKFTKLSGGLEGGANPPAFQRAENKRLE 352
Query: 321 KASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTT-QTASNEGEGD--HTKTPG 377
A E ++ +E+ + Q+ E ES PK + +S G G + P
Sbjct: 353 AAKRAEEAAAVKEAAL--EESLCDTQNSEIESTTTPKKALSGDKSSTIGSGGLINDSVPP 410
Query: 378 VDA-----TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEA 432
D E + ++ SDIDD EVD YLHNEEE YKKIIWEEMN+EYLEEQAAKEA
Sbjct: 411 KDPEEGGENCEGNADPESLSDIDDVEVDWYLHNEEETQYKKIIWEEMNKEYLEEQAAKEA 470
Query: 433 AAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE 492
A A AA + +K++KR + K+S PA T E
Sbjct: 471 LA------------------------AELAARGIVVEEGKKKRKRNEDTKSSTPADTPAE 506
Query: 493 ATRRMLTKKRLSSKINYDVLEKLF 516
AT ML +K L SKIN + +L+
Sbjct: 507 ATYNMLKRKGLGSKINEGAVGELY 530
>gi|297789078|ref|XP_002862547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308133|gb|EFH38805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 420
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 182/360 (50%), Positives = 238/360 (66%), Gaps = 34/360 (9%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RP+D L CD CG++LE+ NFST+ TFVKNAAGQSQ SGN V+++Q
Sbjct: 1 MVWCNHCGKNVPGIRPFDGALSCDLCGRILENFNFSTQVTFVKNAAGQSQASGNIVKSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER + A D++ +++AL IG+ D+++ +A F+ A+ NFTKGRR+E V
Sbjct: 61 SGMSSSRERRIRIAIDELMNLRDALGIGDDRDDVIVMASNFFRTALDLNFTKGRRSELVL 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL+CRQ LLI FS+YL ++VYELG+VYLQ C +LYI + N K VDPSIF+
Sbjct: 121 SSCLYLSCRQLKFAVLLIHFSSYLRVSVYELGSVYLQFCDMLYITENHNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGGNKK-----VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+FT+ LL G ++K V DTA DI+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K
Sbjct: 181 PRFTNMLLKGAHRKKVVGTVVDTATDIIASMKRDWMQTGRKPSGICGAALYTAALSHGIK 240
Query: 235 FSKSDIIE-------DFMARKKELHEGVAANLPNN-------------------GPKVSG 268
SK+DI++ R E AA+ + P
Sbjct: 241 CSKTDIVKIVHICEATLTKRLIEFGNTEAASFTADELSKTERERKKETELRSKRNPISYK 300
Query: 269 MNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEEN 327
VLC H+D KP GLC+SCY+EFM +S GLEGG+DPPAFQ AE+ERM KAS EEN
Sbjct: 301 EGVVLCMHQDC-KPVDYGLCKSCYDEFMKVSGGLEGGSDPPAFQRAEKERMEEKASREEN 359
>gi|334184087|ref|NP_178237.3| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|330250334|gb|AEC05428.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 548
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 239/551 (43%), Positives = 325/551 (58%), Gaps = 92/551 (16%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC CA++V RP+D L CD CG++LE+ NFST+ TFVKNAAGQ N V ++
Sbjct: 1 MVWCKHCAKNVPKIRPFDGGLACDLCGRILENFNFSTDVTFVKNAAGQV---CNIVTSVG 57
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+ +SR+R KA D++R +K+AL IG E D++V +A FY A+ +NFTKGRR E VQ
Sbjct: 58 NS--SSRDRRRRKAIDELRNLKDALGIGDERDDVVDMAAVFYEAAMDQNFTKGRRAELVQ 115
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYLAC +YL ++VYELG+VYLQLC++LY+ N + VDPSIF+
Sbjct: 116 SSCLYLAC-------------SYLRVSVYELGSVYLQLCEMLYLVQNKNYEELVDPSIFI 162
Query: 180 HKFTDRLLPGGN---KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
+FT+ LL G + K V +TA++I++SMKRDWI TGRKPSG+CGAA+Y++AL+HG+ +S
Sbjct: 163 PRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAAIYMAALSHGIMYS 222
Query: 237 KSDIIE-------DFMARKKELHEGVAANL--------------------PNNGPKVSGM 269
++DI + R E A +L PN+ V
Sbjct: 223 RADIAKVVHMCEATITKRLNEFANTEAGSLTVDELDESEEILRKETFTPRPNSDKGV--- 279
Query: 270 NEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS 329
V CKHKD K F GLC+SC+++F+ IS G+ GG+DPPA+Q AE+ERM KA+ EEN
Sbjct: 280 --VNCKHKDL-KRFGYGLCKSCHDDFIIISGGVVGGSDPPAYQRAEKERMEKAAREENEG 336
Query: 330 FERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD 389
+ ++ E + V K + S +GEG+ T G + E SD SD
Sbjct: 337 --------GIGNLN-----HDEQVNVSKR--AKKCSEKGEGE---TYGGERHAEYSDESD 378
Query: 390 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 449
SD DD EV+ L E+E K W N++YLEEQA KEAA AA NCP
Sbjct: 379 ICSDDDDSEVEHVLLGEDETRLKTTAWNLQNKDYLEEQAEKEAALKAA---------NCP 429
Query: 450 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN- 508
E A+ L A+ AAVA SRKEK++KRA EAKN+ P+ TA EA+ + ++N
Sbjct: 430 ED---ARNLVEASKAAVANSRKEKRRKRAEEAKNAPPSATATEASYTE------TQRVNQ 480
Query: 509 YDVLEKLFDDS 519
+ VL++L D S
Sbjct: 481 HHVLDELLDTS 491
>gi|413946304|gb|AFW78953.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 515
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 218/488 (44%), Positives = 290/488 (59%), Gaps = 70/488 (14%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SR+R ++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+
Sbjct: 2 SRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYI 61
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACRQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT
Sbjct: 62 ACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKL 121
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI----- 240
LL N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DI
Sbjct: 122 LLGRRNNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 181
Query: 241 ----------------------IEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHK 277
IE+F+A E + E V+ + P +G E+LCKHK
Sbjct: 182 VCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------EILCKHK 234
Query: 278 DTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDS 336
D G + FA GLC CY +F +S GLEGG+DPPAFQ AE++R+ A E ++ +E+
Sbjct: 235 DKGFEHFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKRLEAAKRAEEAAAAKEAAL 294
Query: 337 PFMSRVDKVQSPEPESIGVPKNCTTQTASNE--GEG---DHTKTPGVDATTEASDGS--- 388
+ Q+ E ES P+ + S++ EG D + E +G+
Sbjct: 295 --EESLCDTQNSEVESAMTPRKGLSGDKSSKMGSEGLINDSMPPKDPEEGGENCEGNADP 352
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
++ SDIDD EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 353 ESLSDIDDAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA-------------- 398
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
A AA + +K++KR K+S PA+T EAT ML +K L SKIN
Sbjct: 399 ----------AELAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKGLGSKIN 448
Query: 509 YDVLEKLF 516
+++L+
Sbjct: 449 VGAVDELY 456
>gi|413946301|gb|AFW78950.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 425
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 169/348 (48%), Positives = 228/348 (65%), Gaps = 37/348 (10%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y SR+R ++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V
Sbjct: 61 ESGYSMSRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT LL N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+D
Sbjct: 181 HRFTKLLLGRRNNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKAD 240
Query: 240 I---------------------------IEDFMARKKELH-EGVAANLPNNGPKVSGMNE 271
I IE+F+A E + E V+ + P +G E
Sbjct: 241 IVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------E 293
Query: 272 VLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 318
+LCKHKD G + FA GLC CY +F +S GLEGG+DPPAFQ AE++R
Sbjct: 294 ILCKHKDKGFEHFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKR 341
>gi|255078514|ref|XP_002502837.1| predicted protein [Micromonas sp. RCC299]
gi|226518103|gb|ACO64095.1| predicted protein [Micromonas sp. RCC299]
Length = 636
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 203/530 (38%), Positives = 285/530 (53%), Gaps = 71/530 (13%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-SRERLMEKAFDDMRQ 80
CC +CGK+L+D+ FST+ TF K A G +Q+ GNFV E G S E+ + K ++ Q
Sbjct: 1 CCTQCGKILDDNVFSTDPTFSKTAGGATQVDGNFV----PESGVDSHEKTINKGKYEISQ 56
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+ + L I ++I + A R Y +AV RNFT+GRRT+QV A+CLY+ CRQ+S+P++LIDFS
Sbjct: 57 VADRLGIRPREDIANAAHRLYKLAVQRNFTRGRRTQQVAAACLYIICRQESRPYMLIDFS 116
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTAR 199
+ + NVY LGAV+LQLC++L + + K +DPS+F+H+F DRL G V +TA
Sbjct: 117 DVVQTNVYVLGAVFLQLCRLLRLEQHPLISKPIDPSLFIHRFADRLTLGRKMHAVANTAL 176
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI------------------- 240
++ASMKRDW+ TGR+PSG+CGAAL+V+AL HG + SK D+
Sbjct: 177 RLVASMKRDWMQTGRRPSGVCGAALWVAALLHGYERSKRDVVAVVHVGEATLRKRVTEFE 236
Query: 241 --------IEDFMARKKELHEGVAANLPNNGPKV---SGMNEVLCKHK--DTGKPFACGL 287
+E+F R K+ +E A L +G + G+ + C HK D FA G+
Sbjct: 237 NTPSAMLSVEEFDIRAKD-YEKEQAALAESGALLGAPGGITALTCIHKDHDGSTHFAHGM 295
Query: 288 CRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS 347
CR CY E+ +S G GG DPPAFQ AE A + +R +P + +
Sbjct: 296 CRQCYLEYARVSGGARGGEDPPAFQAAE--------ARRDREAQRALPAPQATLALPAPA 347
Query: 348 PEPESIGVPKNCTTQTASNEGEGD-HTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNE 406
+ K + E E K G D + + FSD+DD E+D Y+H
Sbjct: 348 AKKGKKMSAKEAREAMEAIEREARAKAKVKGEDEDEDTDAEPETFSDVDDEEIDNYIHTA 407
Query: 407 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 466
EE +++IW E+NR+YLE QAAKEAA AAA AL G++
Sbjct: 408 EEVKLRRVIWSELNRDYLETQAAKEAAVAAAPPAL--------PGIEGDGGKGGKKRKKY 459
Query: 467 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
+ PA TA EA ++ML+ K++SSKINYD L LF
Sbjct: 460 T---------------HQVPADTAAEAAQQMLSSKKISSKINYDALNDLF 494
>gi|145353293|ref|XP_001420953.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357469|ref|XP_001422941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581189|gb|ABO99246.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583185|gb|ABP01300.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 576
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 191/561 (34%), Positives = 283/561 (50%), Gaps = 115/561 (20%)
Query: 3 WCSSCARHVTGH-RPYDSQLCCDRCGKVLEDHN-FSTEATFVKNAAGQSQLSGNFVR--- 57
WC +C + V + CC CGK+L++ FS +ATFVKNA G S G++V
Sbjct: 5 WCETCGKRVAAETNEANGFTCCTTCGKILDERAAFSADATFVKNAQGASVPDGHYVPESG 64
Query: 58 ----TIQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV 105
I++ G S ER + + +++Q+ + L I +++V A R Y +AV
Sbjct: 65 VAHGVIRATRGGRLYGVQLDSHERTLYRGKLEIKQLADRLGIRPREDVVDAAHRLYKLAV 124
Query: 106 ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD 165
RNFT+GRR QV +C+Y+ CRQ+S+P++LIDF++ L NVY LG V+LQLC++L +
Sbjct: 125 QRNFTRGRRISQVAGACMYIICRQESRPYMLIDFADILQTNVYVLGGVFLQLCRLLRLEQ 184
Query: 166 ESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
+ K +DPS+F+H+F D+L G V +TA ++ASMKRDW+ TGR+P+G+CGAAL
Sbjct: 185 HPLMQKPIDPSLFIHRFADKLNLGRRMHTVANTALRLVASMKRDWMQTGRRPNGICGAAL 244
Query: 225 YVSALTHGLKFSKSDI---------------------------IEDFMARKKELHEGVAA 257
+V+A HG SK D+ IE+F + + A
Sbjct: 245 WVAAQIHGFSPSKRDVVAVVHVGESTLKKRLSEFENTPSAALSIEEFDTQARTFEAEEEA 304
Query: 258 NLPNNGPKVSGMNEVLCKHKDTGK--PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAE 315
N S M+ + C HKD FA G+CR+CY +++ IS G GGADPPAF AE
Sbjct: 305 NKNTKSLASSPMSVLSCVHKDNENIPHFAHGMCRACYVDYVRISGGSVGGADPPAFMRAE 364
Query: 316 RERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKT 375
+R + A + + +P + + + +G K
Sbjct: 365 AKRKIDAK---------------------------QKLLLPALSSGELGDEDADGLVAK- 396
Query: 376 PGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 435
E ++ D SD+DD E+D Y+HNE E + ++++W EMN+EYLE QA KE AA+
Sbjct: 397 -------EDNEVIDTLSDVDDDEIDSYIHNENEVNLRRLVWSEMNKEYLEFQALKEQAAS 449
Query: 436 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 495
A + ++ P+ L PA+T EA R
Sbjct: 450 RTSAPTKKKHRKAPDTL---------------------------------PAETPAEAAR 476
Query: 496 RMLTKKRLSSKINYDVLEKLF 516
++L KK+ SSKINY+ LE LF
Sbjct: 477 QVLAKKKGSSKINYEALENLF 497
>gi|302801496|ref|XP_002982504.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
gi|300149603|gb|EFJ16257.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
Length = 588
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 217/588 (36%), Positives = 305/588 (51%), Gaps = 142/588 (24%)
Query: 1 MVWCSSCAR-HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MVWCS C + + H D +CC CG+VL+D+ FS+E TF K+A+GQSQ GN V+
Sbjct: 1 MVWCSYCGKDQIAEHN--DGFICCTGCGRVLDDNVFSSEPTFAKSASGQSQFVGNIVK-- 56
Query: 60 QSEYGA------------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFY 101
QS+YG S +R ++K ++R + ++L++G D+IV A R Y
Sbjct: 57 QSQYGTYARIVDDGTGTVSGYQSNSHQRTLDKGRQEIRNIASSLSVGGGDDIVGSAHRIY 116
Query: 102 GIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161
+AV +NFTKGRRT QV A+CLY+ CR Y LGAV+LQLC +L
Sbjct: 117 VLAVEKNFTKGRRTSQVAAACLYIVCR-------------------YLLGAVFLQLCTLL 157
Query: 162 YIADESNVLKQVDPSIFLHKFTDRLL----PGGNKK----VCDTARDILASMKRDWITTG 213
+ V K VDPS+F+H+FTDRLL PG + K + +TA I+ASMK+DWI TG
Sbjct: 158 RLDQHPMVQKPVDPSLFIHRFTDRLLHRIAPGTSSKNQFAIANTALRIVASMKQDWIQTG 217
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDI---------------------------IEDFMA 246
R+PSG+CGAAL +S HGL+ S +D+ E+F A
Sbjct: 218 RRPSGICGAALLLSTRIHGLECSTADVESVVYVCKATITKRLVEFSNTEAGSLTPEEFEA 277
Query: 247 ----RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEG 301
R+KE+ ++ NNG + E+LC+HKD+G + +A GLC++CY++F+ IS G
Sbjct: 278 KAKQREKEMLSVSQTDIVNNGV----IKEILCEHKDSGAQHYAHGLCKNCYDDFVKISGG 333
Query: 302 LEGGADPPAFQVA--ERERMVK---------ASAEENSSFERESDSPFMSR-VDKVQSPE 349
L+GG+ PPAFQ A ERER++K A ++E+ + SP + + K E
Sbjct: 334 LQGGSAPPAFQRAQKERERLLKNKKRKLTAEAISDEDEDLTCTNSSPVAEKAIKKKLEQE 393
Query: 350 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 409
S + T ++E + + VD D ++ SDIDD
Sbjct: 394 EHSYFDADDVTESCVTHETKAEKRYEDSVD------DEPESLSDIDD------------- 434
Query: 410 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 469
EQ AKEAA A ++ A + + A AAA V S
Sbjct: 435 ----------------EQEAKEAALKAQAESMAA--------VSTSGTAAEIAAATVVMS 470
Query: 470 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
RK ++ K A N PA++A EATR+ML KKRLSSK+NY VLEK+F+
Sbjct: 471 RKARKHKHGDTA-NCKPAESAAEATRQMLEKKRLSSKLNYSVLEKMFN 517
>gi|218196515|gb|EEC78942.1| hypothetical protein OsI_19387 [Oryza sativa Indica Group]
Length = 521
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 204/529 (38%), Positives = 288/529 (54%), Gaps = 100/529 (18%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQM 81
CC CGKVL+D + E TF K A GQ++L+G+ + +I+S S ER + K +++RQ+
Sbjct: 5 CCGLCGKVLDDQVYDGEPTFQKGADGQARLAGSILSSIESGNSVSHERTINKGREEIRQI 64
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
++L++ D I+ +A R+Y +AV +NFT+GRRT V A+CLY+ACRQ K +LLIDFS+
Sbjct: 65 VSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSD 124
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+L I +V+ + C I Q+ S F+ +L
Sbjct: 125 HLQI------SVFAKFCYSRNI--------QLSKSSSTPAFSYIVLQ------------- 157
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI--------------------- 240
TGRKPSGLCGAALY++AL+HG ++K+DI
Sbjct: 158 ---------NTGRKPSGLCGAALYIAALSHGYDYTKADIVAVVHVCEATLTKRLIEFENT 208
Query: 241 ------IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEE 294
IE+F+A+ E V P +G EVLCKHKD + FA GLC CY +
Sbjct: 209 DSGSLTIEEFLAKADE-QVLVTKISPKSG-------EVLCKHKDKAEHFAHGLCEKCYNK 260
Query: 295 FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERES--DSPFMSRVDKVQ---SPE 349
FM +S GLEGG+DPPAFQ AE++R+ A + ++ +E+ +S +R V+ +
Sbjct: 261 FMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEAALESVCEARESDVENNITTP 320
Query: 350 PESIGVPKNCTTQTASNEGEGDHTKTP-GVDATTEASDGSDNFSDIDDFEVDGYLHNEEE 408
P++I K+ T + G+ T+ P G +A +G ++ SDIDD EVDGYLHNEEE
Sbjct: 321 PKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDKADEGPESLSDIDDAEVDGYLHNEEE 380
Query: 409 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 468
YKKIIWEEMN+EYLEEQAAK A AA AA V +
Sbjct: 381 TQYKKIIWEEMNKEYLEEQAAKAALAA-----------------------ELAARGVVVE 417
Query: 469 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
K K+++ + KN+ PAQT EAT+ ML +KRL SKIN + + KL++
Sbjct: 418 EGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYN 466
>gi|302772278|ref|XP_002969557.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
gi|300163033|gb|EFJ29645.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
Length = 507
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 220/366 (60%), Gaps = 62/366 (16%)
Query: 1 MVWCSSCARHVTGHRP-YDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT- 58
MVWCS CA+ R + CC CG+VL+D+ +S+E TF K +AGQSQL GN +R+
Sbjct: 1 MVWCSYCAKDQIADRDDINGFTCCTGCGRVLDDNVYSSEPTFCKGSAGQSQLVGNIIRSG 60
Query: 59 ----IQSEYG------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
I S+ G AS E+ +E+ +++ + ++L+I D+ V A R Y +AV ++
Sbjct: 61 QYSRIGSDPGYSGFQSASHEKTLERGRNEIGDIADSLSISGRDDAVGAAHRLYVLAVEKS 120
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
FTKGRRT+QV A+CLY+ CRQ++KP+LLIDFS+ L +NV +L + +
Sbjct: 121 FTKGRRTQQVAAACLYIVCRQENKPYLLIDFSDSLQVNV------------LLRLEEHPI 168
Query: 169 VLKQVDPSIFLHKFTDRLLPGGN-------KKVCDTARDILASMKRDWITTGRKPSGLCG 221
+ K VDPS+F+H+FTDRLL N + +TA I+ASMKRDWI TGRKPSG+CG
Sbjct: 169 MAKPVDPSLFIHRFTDRLLGLSNGSFGRKHHAIANTALRIVASMKRDWIQTGRKPSGVCG 228
Query: 222 AALYVSALTHGLKFSKSDII---------------------------EDFMARKKELHEG 254
AAL+VSA HG + SKSD++ E+F A+ KEL
Sbjct: 229 AALFVSAQIHGFECSKSDVVSVVHVCGDTLTKRLVEFGNTESGSLTPEEFEAKAKELE-- 286
Query: 255 VAANLPNNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQV 313
+ +P+ K + E+LC+HK+ G A GLCRSC++EFM +S GLEG ++PPAFQ
Sbjct: 287 LQEPVPHVNFK-GHLTEILCEHKELGASHHAHGLCRSCFDEFMKVSGGLEGESNPPAFQR 345
Query: 314 AERERM 319
AE++R
Sbjct: 346 AEKKRF 351
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 488 QTALEATRRMLTKKRLSSKINYDVLEKLFD 517
++A EA RRML K+L S++N+DVL+KLFD
Sbjct: 394 KSAAEAARRMLEAKKLGSRVNFDVLDKLFD 423
>gi|303283326|ref|XP_003060954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457305|gb|EEH54604.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1016
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 216/377 (57%), Gaps = 53/377 (14%)
Query: 1 MVWCSSCARHVTGHRPYDSQL-CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
+ WC++C V + CC +CGK+L+D+ FST+ TF K A G +Q+ GNFV
Sbjct: 8 LPWCTNCQEEVEAETNESNGFTCCTQCGKILDDNVFSTDPTFTKTATGATQVDGNFVNET 67
Query: 60 QSEYGASR---------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
G SR E+ + K +++Q+ + L I ++I A R Y +A
Sbjct: 68 GIGQGVSRGTRGGRLFGLQVDSHEKTINKGKHEIQQVADRLGIRPREDITGAAHRLYKLA 127
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V RNFT+GRRT+QV +CLY+ CRQ+S+P++LIDFS+ + NVY LGAV+LQLC++L +
Sbjct: 128 VQRNFTRGRRTQQVAGACLYIVCRQESRPYMLIDFSDVVQTNVYVLGAVFLQLCRLLRLE 187
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ K +DPS+F+H+F D+L G V +TA ++ASMKRDW+ TGR+PSG+CGAA
Sbjct: 188 QHPLISKPIDPSLFIHRFADKLNLGRRMHAVANTALRLVASMKRDWMQTGRRPSGVCGAA 247
Query: 224 LYVSALTHGLKFSKSDI---------------------------IEDFMARKKELHEGVA 256
L+V+AL HG + SK D+ I++F AR K+L E
Sbjct: 248 LWVAALLHGYERSKRDVVAVVHVGEATLRKRVSEFENTPSAQLSIDEFDARAKDL-EKEQ 306
Query: 257 ANLPNNGPKV----SGMNEVLCKHKD--TGKPFACGLCRSCYEEFMTISEGLEGGADPPA 310
A L ++G + + + C HKD FA G+CR CY E+ +S G GG DPPA
Sbjct: 307 AQLGDSGATLLLGDASTKTMTCVHKDHEGAAHFAHGMCRMCYVEYARVSGGSRGGEDPPA 366
Query: 311 FQVAE--RERMVKASAE 325
FQ AE RE+ + A+A+
Sbjct: 367 FQAAEQRREKELNAAAK 383
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 23/127 (18%)
Query: 390 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 449
FSD+DD EV G++H EE +K+IW E+NR+YLE QAAKEA A+ P
Sbjct: 685 TFSDVDDDEVAGFIHTAEEVKLRKVIWSELNRDYLETQAAKEAIL--------AAAPKPP 736
Query: 450 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 509
G + A ++ PA TA EA ++ML+ K++SSKINY
Sbjct: 737 PGSEDADGKKKKQRKKYT---------------HATPADTAAEAAQQMLSSKKISSKINY 781
Query: 510 DVLEKLF 516
D L LF
Sbjct: 782 DALNDLF 788
>gi|308810665|ref|XP_003082641.1| transcription factor IIB (ISS) [Ostreococcus tauri]
gi|116061110|emb|CAL56498.1| transcription factor IIB (ISS) [Ostreococcus tauri]
Length = 728
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 199/361 (55%), Gaps = 51/361 (14%)
Query: 4 CSSCARHVTGHRPYDSQL-CCDRCGKVLEDHN-FSTEATFVKNAAGQSQLSGNFVR---- 57
C CA+ V + CC +CGK+L + FS E TF KNA G S G FV
Sbjct: 2 CDGCAKRVAAETNESNGFTCCTQCGKILHERVVFSGETTFTKNAQGASVPDGMFVPENGI 61
Query: 58 ---TIQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
I++ G S ER + + +++Q+ + L I +++V A R Y +AV
Sbjct: 62 AHGVIRASRGGRLYGVQLDSHERTLYRGKLEIKQVADRLAIRPREDVVDAAHRLYKLAVQ 121
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
RNFT+GRR QV +CLY+ CRQ+S+P++LIDF++ L NVY LGAV+LQLC++L +
Sbjct: 122 RNFTRGRRVSQVAGACLYIICRQESRPYMLIDFADVLQTNVYVLGAVFLQLCRLLRLEQH 181
Query: 167 SNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
+ K +DPS+F+H+F D+L G V +TA ++ASMKRDW+ TGR+P+G+CGAAL+
Sbjct: 182 PLMQKPIDPSLFIHRFADKLSLGRRMHTVANTALRLVASMKRDWMQTGRRPNGICGAALW 241
Query: 226 VSALTHGLKFSKSDIIE-----------------------------DFMARKKELHEGVA 256
V+A HG SK D++ D AR E+ E
Sbjct: 242 VAAHIHGFNPSKRDVVAVVHVGEATLKKRLSEFENTPSAALSVEEFDTQARTYEIEE--E 299
Query: 257 ANLPNNGPKVSGMNEVLCKHKDT-GKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVA 314
AN S M+ + C HKD+ P FA G+CRSCY +++ IS G GGADPPAF A
Sbjct: 300 ANRTLKSLPSSSMSVLSCVHKDSENTPHFAHGMCRSCYIDYVRISGGSMGGADPPAFMRA 359
Query: 315 E 315
+
Sbjct: 360 K 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 33/131 (25%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D D SD+DD E+D Y+H+E E ++++W E+N+EYLE QA KE A
Sbjct: 556 DYIDTLSDVDDDEIDSYIHDENEVKLRRVVWAELNKEYLEGQALKEQTPA---------- 605
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 505
+ P K++K+ A PA+T EA + L+KK+ SS
Sbjct: 606 RTLPS--------------------TSKRKKKVAVVP---PAETPAEAVHQALSKKKGSS 642
Query: 506 KINYDVLEKLF 516
KINY+VLE LF
Sbjct: 643 KINYEVLENLF 653
>gi|384247443|gb|EIE20930.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 496
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 192/358 (53%), Gaps = 47/358 (13%)
Query: 1 MVWCSSCARHV-TGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M +C C + V + + CC CG VL++ FSTE TF K A G S G F+
Sbjct: 1 MAYCGHCKQEVEVENDDANGYQCCTTCGAVLDEGGFSTEVTFTKGAGGVSTADGQFLSDA 60
Query: 60 QSEYGASR--------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV 105
+ G +R E+ + K ++ Q+ + L I D+ V A R Y +A+
Sbjct: 61 AASRGLARISGGRGYGYQLDSHEKSLNKGRSEVTQLVDRLRIAPRDDTVEAASRLYKLAL 120
Query: 106 ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD 165
+RNFT+GRRT+ V A+CLY+ CRQ SKPF+LIDFS+ L +NV+ LGAV+L LC++L + +
Sbjct: 121 SRNFTRGRRTQLVAAACLYIVCRQDSKPFMLIDFSDALQVNVFTLGAVFLHLCKLLRLEE 180
Query: 166 ESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
+ VDPS++LH+F +RL V +TA ++ASMKRDW+ TGR+PSG+CGAAL
Sbjct: 181 HPMFQRPVDPSLYLHRFANRLCVNDKFHAVTNTALRLVASMKRDWMQTGRRPSGICGAAL 240
Query: 225 YVSALTHGLKFSKSDI---------------------------IEDF--MARKKELHEGV 255
+++A HG++ SK D+ IE+F R E
Sbjct: 241 FIAAHIHGVEKSKRDVVNIVHVGEATLAKRVKEFALTTSGDLTIEEFEDEGRALEAQHRK 300
Query: 256 AANLPNNGPKVSGMNEVLCKHKDTG--KPFACGLCRSCYEEFMTISEGLEGGADPPAF 311
L G + C+H G + FA G+C+ CYEEF+ ++ G GADPPAF
Sbjct: 301 ELQLNTIGAPAPAHTKGGCQHLTAGAAQHFAHGMCKVCYEEFLEVTGGTSAGADPPAF 358
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 37/118 (31%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
YLH EE K++IW E+NRE+L+ Q+AK AA +A A PE +
Sbjct: 411 YLHTPEEAKLKELIWTELNREFLDCQSAKAAALESAAAKAR------PEDMLE------- 457
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
PA+T EATRRML K+LSSKINY+ L LF ++
Sbjct: 458 ------------------------PAETPEEATRRMLDAKKLSSKINYNALANLFSET 491
>gi|357117994|ref|XP_003560745.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
[Brachypodium distachyon]
Length = 516
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 189/321 (58%), Gaps = 31/321 (9%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ +S E TF+ GQS++ G +R+I
Sbjct: 1 MVYCTHCADYCPYIKDPDKGYICCGTCGKVLDQDIYSDEPTFISYGPGQSRVEGTPLRSI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+ S ER + K D++ Q+ +L++G D I+ +A + Y +AV NFT+GRRT QV
Sbjct: 61 EIGTSLSHERTLMKGRDEIWQIVTSLHVGGGDTIIDMAHKIYTLAVDHNFTRGRRTTQVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+A RQ K +LLIDFS+YL I+VY LGAV+LQLCQVL +A+ V K +DPS+F+
Sbjct: 121 AACLYIAVRQSKKAYLLIDFSDYLKISVYVLGAVFLQLCQVLLLAEHPIVQKLIDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT+R+ P T DI A + +C A L + S S
Sbjct: 181 HRFTERIQPPNY-----TKSDIFAVVH------------ICEATLTKRLIEFENTDSGSL 223
Query: 240 IIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT-GKPFACGLCRSCYEEFMTI 298
+IEDF+A+ E P++ EVLCKHKD + A GLC CY +F+ +
Sbjct: 224 MIEDFLAKADE-------EQPSHKS-----GEVLCKHKDKDAEHLAHGLCEKCYNKFIKM 271
Query: 299 SEGLEGGADPPAFQVAERERM 319
S GLEGGADPPAFQ AE++R+
Sbjct: 272 SGGLEGGADPPAFQQAEKQRL 292
>gi|412991514|emb|CCO16359.1| predicted protein [Bathycoccus prasinos]
Length = 846
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 198/366 (54%), Gaps = 50/366 (13%)
Query: 3 WCSSCARHVTGH-RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
+CS C V + CC CGK+L+D FST+ TF K + G Q+ GNFV
Sbjct: 5 YCSQCKSDVVAEVNDANGFTCCTVCGKILDDSVFSTDPTFSKTSGGAIQVDGNFVPESGI 64
Query: 62 EYGASR---------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
+ R E+ + K ++ Q+ + L + ++I A R Y IAV+
Sbjct: 65 AHSVGRPTRGGRVFGLQIDSHEKTVNKGKQEINQIADRLAMKPREDITTSAHRLYKIAVS 124
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
RNFT+GRRT QV +CLY+ CRQ+++P++LIDFS+ L NVY LG V+LQLC+++ +
Sbjct: 125 RNFTRGRRTAQVAGACLYVVCRQENRPYMLIDFSDVLQTNVYVLGGVFLQLCRLMRLEQH 184
Query: 167 SNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
+ + +DPS+F+H+F D++ G V +TA ++ASMKRDW+ TGR+P+G+CGAAL+
Sbjct: 185 PLMQRPIDPSLFIHRFADKMNLGKRVHSVSNTALRLVASMKRDWMQTGRRPAGICGAALW 244
Query: 226 VSALTHGLKFSKSDII-------EDFMARKKELHEGVAANLPNN---------------G 263
V++ HG SKSD++ + R E AA L G
Sbjct: 245 VASHVHGFDRSKSDVVSIVHIGEQTLKKRITEFSSTPAALLSVEEFDAQAQKYENDDFIG 304
Query: 264 PK------VSGMNEVLCKHKD---TGKPFACGLCRSCYEEFMTISEG--LEGGADPPAFQ 312
K SG + CKH+D + F G+CR+CY +++ +S G GG DPPAF
Sbjct: 305 SKEQQDLICSGSTTLTCKHRDDDNMPEHFQHGMCRACYIDYVKVSGGTTFLGGMDPPAFT 364
Query: 313 VAERER 318
A+++R
Sbjct: 365 AAQKKR 370
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 25/143 (17%)
Query: 377 GVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 435
GVD T + + D SDI+D +++ Y++N+E+ + K++IW EMN++YLE QAAKEAA+
Sbjct: 620 GVDTPTNDEEEMRDVCSDIEDEDINEYMNNQEQVNLKRVIWSEMNKDYLESQAAKEAASK 679
Query: 436 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 495
A AA+E +KE++ +RA A A+ A
Sbjct: 680 DA----------------AARESNQPPRRKYNTKKKEEKYQRAENA--------AVAAQT 715
Query: 496 RMLTKKRLSSKINYDVLEKLFDD 518
++ K+ +SSKINY+ L+ LFDD
Sbjct: 716 VLIKKRGVSSKINYEALQNLFDD 738
>gi|307107018|gb|EFN55262.1| hypothetical protein CHLNCDRAFT_57908 [Chlorella variabilis]
Length = 861
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 196/370 (52%), Gaps = 66/370 (17%)
Query: 1 MVWCSSCARHVTGHRPYDSQL-------CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSG 53
MV+C+ CA V D ++ CC +CG+VLED FS + TF K+A G+S + G
Sbjct: 1 MVYCNYCACEV------DVEVDDANGFSCCVQCGRVLEDTAFSADITFQKDAGGESTVVG 54
Query: 54 NFV------RTIQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
FV R I +G S E+ ++ ++ + + L++ +E + A R
Sbjct: 55 QFVNESGVARGIGRIHGGRVYAYQADSHEKAQQRGRHEIAHLVDQLSVRPREESIEAAHR 114
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y +A+ R FT+GRRT QV A+C+YL CRQ SKPFLLIDFS+ L INV+ LGAV+LQL +
Sbjct: 115 LYKLALQRGFTRGRRTNQVAAACVYLVCRQDSKPFLLIDFSDALQINVFTLGAVFLQLAK 174
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSG 218
+L + + K VDPS+++H+F DRL G V +TA ++ASMKRDWI TGR+PSG
Sbjct: 175 LLRLTEHPMFAKPVDPSLYIHRFADRLDFGRQMHAVANTALRLVASMKRDWIQTGRRPSG 234
Query: 219 LCGAALYVSALTHGLKFSKSDII---------------------------EDFMARKKEL 251
+CGAA+Y++A HG + S D++ ++F R K++
Sbjct: 235 ICGAAIYIAAHIHGFERSVRDVVAVVHIGEHTLSKRLYEFSSTSASAYTADEFEERVKQI 294
Query: 252 HEGVAANLPNNGP--KVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPP 309
L P V + C+H +P A G+C S S G+ GA+PP
Sbjct: 295 EADETERLEAAQPVEPVGLLESTGCEHLREWRP-AAGVCDS--------SGGVYNGANPP 345
Query: 310 AFQVAERERM 319
AF R+ M
Sbjct: 346 AFDRNRRKEM 355
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 383 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 442
E G D SDI D ++D YL ++ E K+ IW MNR++LE+QAAK AA AA+ A+
Sbjct: 575 EEEGGDDLLSDIGDSDIDMYLADDAEVKCKEEIWNMMNRDWLEKQAAKRAAQEAAERAVA 634
Query: 443 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 502
A V K K R A + PA+TA EA RML ++
Sbjct: 635 EQQAAQEAAEAAGVAYKRGRGRPVGS--KTKNHHRGAGMADLPPAETAQEAAMRMLDHRK 692
Query: 503 LSSKINYDVLEKLF 516
LS+KINY L LF
Sbjct: 693 LSNKINYSALADLF 706
>gi|357119379|ref|XP_003561419.1| PREDICTED: uncharacterized protein LOC100840180 [Brachypodium
distachyon]
Length = 721
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/392 (40%), Positives = 213/392 (54%), Gaps = 71/392 (18%)
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGA 222
+ DE V ++ ++ L + + LL + V DTA I+ASMKRDW+ TGRKPSGLCGA
Sbjct: 306 LTDERTVETPMELNVHL-RASVGLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGA 364
Query: 223 ALYVSALTHGLKFSKSDI---------------------------IEDFMARKKELHEGV 255
ALY++AL+HG ++KSDI IED +A+ E
Sbjct: 365 ALYIAALSHGYNYTKSDIVAVVHICEATLTKRLIEFENTDSGSLTIEDVLAKADE----- 419
Query: 256 AANLPNNGP-KVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQV 313
P + P + SG EVLCKHKD + FA GLC CY +F+ +S GLEGGADPPAFQ
Sbjct: 420 --EQPVSKPSRKSG--EVLCKHKDKDIEHFAHGLCEKCYNKFIKMSGGLEGGADPPAFQR 475
Query: 314 AERERMVKASAEENSSFER-----ESDSPFMSR--VDKVQSPEPESIGVPKNCTTQTASN 366
AER+R+ A E ++ + ES+ + D + SP+ +IG K+ T + N
Sbjct: 476 AERQRLEAAKKSEEAAALKEAALGESNCEIQNSDVEDNIISPKKGAIG-DKSLTIPSEQN 534
Query: 367 EGEGDHTKTPGVDATTEASDGS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 425
+ +K P V D ++FSDIDD EVDGYLHNEEE HYKKIIWEEMN+EY+E
Sbjct: 535 ANDNIASKDPEVGGENSKPDADPESFSDIDDVEVDGYLHNEEETHYKKIIWEEMNKEYIE 594
Query: 426 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 485
EQAAKEA AA A G+ Q +K+++R + KN
Sbjct: 595 EQAAKEALAAELAAR--------GVGMGGGQ---------------QKKRRRNEDTKNLS 631
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
PA+T EAT ML +K L SKIN + + L++
Sbjct: 632 PAETPAEATYNMLKRKGLGSKINVEAVGGLYN 663
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M +C+ CA + + P +CC CGKVL+ + TE TFVK+ GQSQ +GN + +I
Sbjct: 1 MFYCTHCADYCPYIKDPDKGYICCGTCGKVLDQDIYDTEPTFVKDGLGQSQRAGNVISSI 60
Query: 60 QSEYGASRERLMEKAF 75
+S S ER + K
Sbjct: 61 ESGSSISHERTLMKGM 76
>gi|297592169|gb|ADI46953.1| BFR1m [Volvox carteri f. nagariensis]
Length = 826
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 153/258 (59%), Gaps = 17/258 (6%)
Query: 1 MVWCSSCARHVTGHRPYDSQL-CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MVWCS C V + CC +CG+VLED FST+ F K A G +L G V
Sbjct: 1 MVWCSQCQAEVELEADEANGFSCCVQCGRVLEDTAFSTDVMFTKGADGAGELVGQLVGAN 60
Query: 60 QSEYGASR-------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
+G SR E + + ++ + AL I S E + R Y +A+
Sbjct: 61 GDAHGVSRYSGGRLWASGGGHEGALSRGRHEIVALVEALRISPSSEAIEAGHRLYRLALQ 120
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
R FT+GRR QV A CLY+ CR + +P++LIDFS++L++NVY LGAV+L + ++L + +
Sbjct: 121 RGFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHLSVNVYGLGAVFLDMLRLLRLEEH 180
Query: 167 SNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ K +DPS+F+++F DRL LP KV TA ++ SMKRDW+ TGR+P+G+CGAA
Sbjct: 181 ATFTKPIDPSLFMNRFVDRLRLPTQELRTKVGYTATRLVQSMKRDWMLTGRRPNGICGAA 240
Query: 224 LYVSALTHGLKFSKSDII 241
L+++A HG++ +K DII
Sbjct: 241 LFLAAHIHGVEKTKMDII 258
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 371 DHTKTPGVDATTEASDG--SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 428
D G D + DG SD+ SDI D EVDGYL EE ++ +W EMNR+++E Q
Sbjct: 583 DAAVAAGRDVVDKGGDGHSSDHLSDIHDDEVDGYLATNEEASVRRQLWLEMNRDWVELQE 642
Query: 429 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 488
AK+AA AA A +A+ +++ +K+A A+
Sbjct: 643 AKKAAEAAED-----------------------KRAGLARPKRKYLRKKA----EVPAAE 675
Query: 489 TALEATRRMLTKKRLSSKINYDVLEKLF 516
A ATR +L K+LS+KINY L LF
Sbjct: 676 DAAGATRNLLASKKLSNKINYGALADLF 703
>gi|297592086|gb|ADI46871.1| BFR1f [Volvox carteri f. nagariensis]
Length = 835
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 153/258 (59%), Gaps = 17/258 (6%)
Query: 1 MVWCSSCARHVTGHRPYDSQL-CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M+WCS C V + CC +CG+VLED FS++ F K A G +L G V
Sbjct: 1 MIWCSQCQAEVELEADEANGFSCCVQCGRVLEDTAFSSDVMFTKGADGAGELVGQLVGAN 60
Query: 60 QSEYGASR-------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
+G SR E + + ++ + AL I S E + R Y +A+
Sbjct: 61 GDAHGVSRFSGGRLWASGGGHEGALSRGRHEIVALVEALRISPSSEAIEAGHRLYRLALQ 120
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
R FT+GRR QV A CLY+ CR + +P++LIDFS++L++NVY LGAV+L + ++L + +
Sbjct: 121 RGFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHLSVNVYGLGAVFLDMLRLLRLEEH 180
Query: 167 SNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ K +DPS+F+++F DRL LP KV TA ++ SMKRDW+ TGR+P+G+CGAA
Sbjct: 181 ATFTKPIDPSLFMNRFVDRLRLPTQELRTKVGYTATRLVQSMKRDWMLTGRRPNGICGAA 240
Query: 224 LYVSALTHGLKFSKSDII 241
L+++A HG++ +K DII
Sbjct: 241 LFLAAHIHGVEKTKMDII 258
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 371 DHTKTPGVDATTEASDG--SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 428
D G D + DG SD+ SDI D EVDGYL EE ++ +W EMNR+++E Q
Sbjct: 592 DAAVAAGRDVVDKGGDGHSSDHLSDIHDDEVDGYLATNEEASVRRQLWLEMNRDWVELQE 651
Query: 429 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 488
AK+AA AA A +A+ +++ +K+A A+
Sbjct: 652 AKKAAEAAED-----------------------KRAGLARPKRKYLRKKA----EVPAAE 684
Query: 489 TALEATRRMLTKKRLSSKINYDVLEKLF 516
A ATR +L K+LS+KINY L LF
Sbjct: 685 DAAGATRNLLASKKLSNKINYGALADLF 712
>gi|189238877|ref|XP_973702.2| PREDICTED: similar to transcription factor IIIB 90 kDa subunit
(TFIIIB90) [Tribolium castaneum]
Length = 617
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 170/567 (29%), Positives = 256/567 (45%), Gaps = 116/567 (20%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTI 59
C SC P C CG VLE + E F + A G + G FV +
Sbjct: 7 CKSCGSSDIEVDPARGDAVCTNCGSVLEVNIIVAEVQFEEGAHGTNSAIGQFVSADSKGG 66
Query: 60 QSEYGAS---------RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
+++GAS RE + KA + + Q+ N L + + + A F+ +A+ RN T
Sbjct: 67 ATKFGASFHVGAGVESREMTLRKARNGITQLCNQLQLNQ--HCIDTACNFFKMALNRNLT 124
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
KGR+ V A+C+YL CR + LLID S+ L I YELG YL+L Q L I +
Sbjct: 125 KGRKNTHVHAACVYLTCRTEGTAHLLIDISDVLQICCYELGRTYLKLSQALSIN-----I 179
Query: 171 KQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDP +++ +F +L G ++V +TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 180 PAVDPCLYILRFAAKLEFGSKTQQVANTALRLVQRMKRDSIHSGRRPSGLCGAALLIAAR 239
Query: 230 THGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 289
H S SDI++ ++HE S + + L + DT P +
Sbjct: 240 LHEFGRSASDIVKIV-----KVHE-------------STLRKRLIEFGDT--PSSA---- 275
Query: 290 SCYEEFMTISEGLEGGADPPAFQVAER------ERMVKASAEENSSFERE------SDSP 337
EEFMT+ LE DPP+F+ A + +R+++ AE + ++E D+
Sbjct: 276 LTLEEFMTVD--LEEEQDPPSFKAARKKDKERLQRLMEEEAESITELQQEIEMQLNRDAK 333
Query: 338 FMSRVDKVQSPE----------PESIGVPKNCTTQTASNEGE---------GDHTKTPGV 378
SR K + E ++G + A + E G + G+
Sbjct: 334 MKSRKKKERDTEEIQETNRFIRESTMGTINQIIQEEAIEDPEIAKEPVKELGPDIASMGL 393
Query: 379 DATTEAS----------DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 428
++ E + D F DIDD E+D Y+ +E E K IW + N +LEEQ
Sbjct: 394 ASSLEDTSNAVQPPQPLDVDMTFDDIDDEELDSYIMSEHESQNKNAIWLKRNAAFLEEQK 453
Query: 429 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 488
K E LQ +E + + EK+++R K GP
Sbjct: 454 IK------------------AEKLQKERE----------EGKPEKKKRRNVRRKPIGPTN 485
Query: 489 TALEATRRMLTKKRLSSKINYDVLEKL 515
+A EA ++L +K++SSKINYDVL+ L
Sbjct: 486 SAGEAIEKILQEKKISSKINYDVLKSL 512
>gi|452820163|gb|EME27209.1| RNA polymerase III transcription factor IIIB [Galdieria
sulphuraria]
Length = 547
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 161/558 (28%), Positives = 247/558 (44%), Gaps = 103/558 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C C H C +CG ++E++ +E TFV+ G S + G FV +
Sbjct: 26 CPHCGSTELEHDAAQGNTVCTQCGCIVEENTIVSEVTFVEGPGGHSSVVGQFVDSSGYVP 85
Query: 59 -----IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
I SRE + ++ AL++ S E A R + +A+ NF +GR
Sbjct: 86 SSGVIIPGLSKESREATRNNGRKIIAEVVGALHLNPSQE--EQAFRMFLLAIEHNFLQGR 143
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
+ V ASCLY+ CR++ P LLIDFS+YL NVY+LG +L+ ++L ++ L +
Sbjct: 144 KASNVCASCLYIVCRREKTPHLLIDFSDYLQTNVYDLGRTFLKFARILNLS-----LPII 198
Query: 174 DPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
DPS+++H+F +L V +A ++A MKRDWI TGR+PSGLCGAAL+V+A HG
Sbjct: 199 DPSLYIHRFASKLGFEEKTHAVATSALRLIARMKRDWIHTGRRPSGLCGAALFVAAKMHG 258
Query: 233 LKFSKSDIIE-----DFMARKK--ELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFAC 285
S+ +I+ D RK+ EL E +A L +E+ D G A
Sbjct: 259 FYRSQREIVNVVRIGDVTLRKRLLELEETPSALLT--------ADEIDAMGGDDGNVEAL 310
Query: 286 GLCRSCYEEFMTISEGLEGGADPPAFQ------------VAERERMVKASAEENSSFER- 332
E +DPP+F+ V ERE ++EE ER
Sbjct: 311 SDINKFKE------------SDPPSFKRRRNLEYYGEEDVIEREMNEALNSEEVKMIERG 358
Query: 333 --------------ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV 378
+ S SRV + V N + T SN G +
Sbjct: 359 EQSAESMTHPIFAADFSSETFSRVTDEMTSGYLDDSVALNGSEVTNSN---GHQSSKDEE 415
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
T+ D + DID+ E++ YL+NEEE+ K+ +W +N++YLE QA
Sbjct: 416 SLETDEDDDDLDLFDIDEEELNSYLNNEEEEQQKRELWTRLNQDYLERQA---------- 465
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
ELA + K+K++ R + + S + ++A L
Sbjct: 466 ------------------ELAQDETEDSSFVEKKKRKTRRSSNRASHGTDSTVDAVLDAL 507
Query: 499 TKKRLSSKINYDVLEKLF 516
++K++S K+NY L++LF
Sbjct: 508 SEKKVSKKVNYAALQELF 525
>gi|224059412|ref|XP_002299842.1| predicted protein [Populus trichocarpa]
gi|222847100|gb|EEE84647.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 108/137 (78%)
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V RNFTKGRRT+QVQA+CLY+ACR+ KP+LLIDFSNYL IN+Y LGAV+LQLC+VL +
Sbjct: 1 VERNFTKGRRTDQVQAACLYIACRENRKPYLLIDFSNYLQINIYVLGAVFLQLCKVLNLT 60
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
+ + K +DPSIF+HK+T L G N+++ D A I+ASM W+ TGR+PS L GAAL
Sbjct: 61 EHAICQKLLDPSIFIHKYTASLSGGKNREISDDALTIIASMNHHWMQTGRRPSALWGAAL 120
Query: 225 YVSALTHGLKFSKSDII 241
Y+SA++HGL SKSDI+
Sbjct: 121 YISAISHGLNCSKSDIL 137
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 59/76 (77%)
Query: 426 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 485
EQ AKEAA A K A E ++KNCPE LQAA++L AA A +AKS+KE QQKRAAEA+NS
Sbjct: 173 EQEAKEAATATHKEAWEENFKNCPEDLQAARKLDAAVKADLAKSKKEMQQKRAAEARNSV 232
Query: 486 PAQTALEATRRMLTKK 501
PA++A EA RMLTKK
Sbjct: 233 PAKSAAEAVHRMLTKK 248
>gi|403373133|gb|EJY86480.1| hypothetical protein OXYTRI_13619 [Oxytricha trifallax]
Length = 521
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 214/470 (45%), Gaps = 59/470 (12%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA-----GQSQLSGNFVRT 58
C+ C T + C CG VLE + +E F + A Q +
Sbjct: 3 CNKCGSTQTEYNAPQGIYACLGCGNVLESNTIVSELQFANSMATGFFLNQRNGQAALYQG 62
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
++ + SR + K + + + A +G S IV +RF+ +A +NF +GR T+ V
Sbjct: 63 KRALFSDSRALRLSKGYKVVEGI--ASQLGMSQYIVEAGQRFFKLAYEKNFIQGRNTKHV 120
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A CLY+ACR++ P LLIDFS+ L NVY LG+VYL+L Q L++ + +DPSIF
Sbjct: 121 AAVCLYIACRKEKTPHLLIDFSDVLQTNVYILGSVYLKLVQRLFLE-----VPLIDPSIF 175
Query: 179 LHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+H+F +L G + +V TA +L +MKR WITTGR+P+GLCGAA+ ++A H K +
Sbjct: 176 IHRFCSKLEFEGKSHQVALTALRLLQTMKRAWITTGRRPNGLCGAAILIAARYHNYKRNI 235
Query: 238 SDII-------EDFMARKKELHEGVAANLP-------------------NNGPKVSGMNE 271
I+ E R E A L N +G N
Sbjct: 236 GQIVRVVHVCEETIRKRLDEFKNTRTAQLTRDEFQSIEQGGRQSSSATNTNEQYQNGTNG 295
Query: 272 VLCK----------HKDTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV 320
L ++ P F LC+ E + E L + AFQ+ ER++
Sbjct: 296 QLMNIEKSPSNHSVEENMDPPSFTRNLCKKKLEITEDMDE-LHKMLEEKAFQI--EERLM 352
Query: 321 KASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGE---GDHTKTPG 377
K + N S++ E P ++ + + I +N N+ + D +
Sbjct: 353 KYEGQRN-SYQEEVKQPMTPPINDMDL--YQQIDTSQNMLVPYQFNQPQIQIQDTNRLQM 409
Query: 378 VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQ 427
E++DG + SDIDD E+D + EEE+ K I+W +NR+++ EQ
Sbjct: 410 ALKQFESNDGVETLSDIDDAEIDQLILTEEERKLKTILWNNLNRDWILEQ 459
>gi|4262235|gb|AAD14528.1| putative transcription factor [Arabidopsis thaliana]
Length = 257
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 109/137 (79%), Gaps = 3/137 (2%)
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
+NFTKGRR E VQ+SCLYLACR L IDFS+YL ++VYELG+VYLQLC++LY+
Sbjct: 3 QNFTKGRRAELVQSSCLYLACRDMKISLLFIDFSSYLRVSVYELGSVYLQLCEMLYLVQN 62
Query: 167 SNVLKQVDPSIFLHKFTDRLLPGGNKK---VCDTARDILASMKRDWITTGRKPSGLCGAA 223
N + VDPSIF+ +FT+ LL G + K V +TA++I++SMKRDWI TGRKPSG+CGAA
Sbjct: 63 KNYEELVDPSIFIPRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAA 122
Query: 224 LYVSALTHGLKFSKSDI 240
+Y++AL+HG+ +S++DI
Sbjct: 123 IYMAALSHGIMYSRADI 139
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 18/91 (19%)
Query: 414 IIWEEMNREY---LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSR 470
+I E+ RE+ LE++ +E AA NCPE A+ L A+ AAVA SR
Sbjct: 175 LISEQRKREWKKQLEKKTREELAA------------NCPED---ARNLVEASKAAVANSR 219
Query: 471 KEKQQKRAAEAKNSGPAQTALEATRRMLTKK 501
KEK++KRA EAKN+ P+ TA EA R L +K
Sbjct: 220 KEKRRKRAEEAKNAPPSATATEAVCRTLERK 250
>gi|196016326|ref|XP_002118016.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
gi|190579403|gb|EDV19499.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
Length = 583
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 148/532 (27%), Positives = 243/532 (45%), Gaps = 91/532 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG----------ASRERLME 72
C CG VLED +E +F +NA G + + G +V +G SRE ++
Sbjct: 24 CTSCGAVLEDSIIVSEISFKENAMGGASVIGQYVAPDGKSHGYVDGFHGFSKESREITLQ 83
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ Q+ L + ++ + + RF+ +AV + T+GR+T V A+CLY+ CR +
Sbjct: 84 NGKKRLTQLGQQLKLNQN--CIDMGYRFFKMAVNKRLTRGRKTSHVVAACLYIVCRVED- 140
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
+L+DFS+ L +NVY LG YL++ L I + +DP +++H+F ++L G
Sbjct: 141 --MLLDFSDILQVNVYVLGKTYLRITAALSIN-----IPAIDPCLYIHRFANKLEFGDKT 193
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DF 244
VC A ++A MKRDW+ GR+PSGLCGA L VSA HG +K II
Sbjct: 194 HDVCMMALRLVARMKRDWMHHGRRPSGLCGAGLLVSARLHGYNRTKKQIIRVVRVCEATL 253
Query: 245 MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS-CYEEFMTISEGLE 303
R E E +A L + ++ + + F R+ ++E IS L
Sbjct: 254 RKRLGEFEETPSAKL-----TIDEFQKIDLEEEQDPPSFTQSRKRAKQFQEDPVISTDLA 308
Query: 304 GGADPPAFQ-----VAERERMVKASAEENSSFERESDSPFMSRVD----KVQSPEPESIG 354
G A Q V E++R+++ + N E+ + P ++ + ++ P P
Sbjct: 309 GEVQ--AIQEELEKVLEKKRLLEDVEQSNQEEEKRDNIPVLNSTNSYCTRLSGPLP---- 362
Query: 355 VPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS--DNFSDIDDFEVDGYLHNEEEKHYK 412
T +T +TP + AT E +D ++ S +DD E++ YL +E+E K
Sbjct: 363 -----TVETVCG-------RTPSL-ATQEFNDKGVEEDLSYVDDDEINEYLLDEKEVEIK 409
Query: 413 KIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKE 472
+W E N++YL Q K + ++ + PE + ++ +
Sbjct: 410 TKVWTEENKDYLTAQLEK-------ASRIDKDSNDKPESKKRKRKYKRNQLIS------- 455
Query: 473 KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVCLYS 524
PA + EA +ML +K++SSKINY+VL L + + C S
Sbjct: 456 -------------PANSVGEAIEKMLAEKKISSKINYEVLRDLTETNACTTS 494
>gi|449015338|dbj|BAM78740.1| RNA polymerase III transcription factor IIIB [Cyanidioschyzon
merolae strain 10D]
Length = 953
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 164/334 (49%), Gaps = 49/334 (14%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ------------------- 60
Q C CG V+E++ E FV+ A G S + G FVRT
Sbjct: 249 QTACMLCGHVVEENTVVNELQFVEGAGGHSAVVGQFVRTGSSGAASLGAAAAATAAGASL 308
Query: 61 ----SEYGASR-------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
S G +R R + A R A + V A R + +AV NF
Sbjct: 309 LYNASTAGVTRLTIGHRESRELTYAAGRRRIATIASQLHLPPRFVDAAHRLFTLAVQHNF 368
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
+GRRT+ V A+ LY+ CR++ P LLIDFS+ L INVY LG YL+LC+VL++A
Sbjct: 369 VQGRRTQTVAAAALYIVCRREKTPHLLIDFSDTLRINVYVLGHTYLKLCRVLHLA----- 423
Query: 170 LKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
L +DPS ++H+F RL G + V TA +++ MKRDWI TGR+P+GLCGAAL ++A
Sbjct: 424 LPIIDPSFYIHRFASRLDLGEKQNAVAQTALRLISRMKRDWIHTGRRPAGLCGAALLIAA 483
Query: 229 LTHGLKFSKSDI-----IEDFMARKK--ELHEGVAANLPNNGPKV---SGMNEVLCKHKD 278
HG + S+ +I + D R++ E+ E L G ++ SG+ E + +
Sbjct: 484 RMHGFRRSQREIGAVVRVGDMTIRQRLCEIEETPTGTL--TGRELAAESGLIESVAEEDT 541
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ 312
T P A S + L+ G DPPAF+
Sbjct: 542 TEAPLAATADTSANAVSPEAVDTLD-GCDPPAFR 574
>gi|41054023|ref|NP_956192.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIBa [Danio rerio]
gi|28422474|gb|AAH46877.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Danio rerio]
gi|182889790|gb|AAI65640.1| Brf1 protein [Danio rerio]
Length = 661
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 160/564 (28%), Positives = 250/564 (44%), Gaps = 126/564 (22%)
Query: 23 CDRCGKVLEDHNFSTEATFVKN------AAGQ----------SQLSGNFVRTIQSEYGAS 66
C CG VLED+ +E TFV++ A GQ L GNF ++ E S
Sbjct: 23 CMGCGSVLEDNIIVSEVTFVESGGGGSSAVGQFVAGDASGNVPSLGGNFQTSVGRE---S 79
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R ++ A + + + L + + + A FY +A++++ TKGR++ V A+CLYL
Sbjct: 80 RAATLQNAKRQINHLGHQLQMNQ--HCLDTAFNFYKMALSKHLTKGRKSTHVIAACLYLV 137
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F +L
Sbjct: 138 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLARELCINAPA-----IDPCLYIPRFA-QL 191
Query: 187 LPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI---- 240
L G K +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++
Sbjct: 192 LEFGEKSHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTIKEVISVV 251
Query: 241 -----------------------IEDFM-------------------ARKKELHEGVAAN 258
IE+FM + K++ + +A
Sbjct: 252 KVCEATLRKRLYEFEDTPTSELTIEEFMKTDLEQECDPPSFAAGLRKQKLKQIEQELAKK 311
Query: 259 LPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEE----FMTISEGLEGGAD---PPAF 311
+ + ++ G + + ++ +P A G+ SC E + S L+G D A
Sbjct: 312 VDDIEGEICGYQDEIEVELESCRPKARGIYASCSREDDVVSLASSSHLDGEDDELRAAAS 371
Query: 312 QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGD 371
+ + E S +R S S + + P S+G+ ++ T E +
Sbjct: 372 HLYGENEEQEQDGERVSLTKRPSLSLLLGAL-----PTSASLGLSESITKMGEEKEND-- 424
Query: 372 HTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 431
EA G + S ID+ E+D Y+ N++E K +W N +YL+EQ KE
Sbjct: 425 ----------VEAEGGELDLSGIDEDEIDRYILNDKEVKVKTELWMIQNADYLKEQKEKE 474
Query: 432 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 491
A K E +YK RK ++ R E N A TA
Sbjct: 475 ERIAKEKE--EGTYKE----------------------RKPRKSTRRREPIN---ANTAD 507
Query: 492 EATRRMLTKKRLSSKINYDVLEKL 515
EA +ML +KR+S+KINYDVL+ L
Sbjct: 508 EAIEKMLEQKRISTKINYDVLKDL 531
>gi|413948298|gb|AFW80947.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
Length = 374
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 184/350 (52%), Gaps = 72/350 (20%)
Query: 205 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI------------------------ 240
MKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DI
Sbjct: 1 MKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSG 60
Query: 241 ---IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPF---ACGLCRSCYEE 294
IE+F+A E +E A++ PK SG E+LCKHK GK F A GLC C+ +
Sbjct: 61 SLTIEEFLATADEYNE---ASVSKYSPK-SG--EILCKHK--GKDFEHFAHGLCEKCFNK 112
Query: 295 FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIG 354
F +S GLEGGA+PPAFQ AE +R+ A E ++ +E+ + Q+ E ES
Sbjct: 113 FTKLSGGLEGGANPPAFQRAENKRLEAAKRAEEAAAVKEAAL--EESLCDTQNSEIESTT 170
Query: 355 VPKNCTT-QTASNEGEGD--HTKTPGVDA-----TTEASDGSDNFSDIDDFEVDGYLHNE 406
PK + +S G G + P D E + ++ SDIDD EVD YLHNE
Sbjct: 171 TPKKALSGDKSSTIGSGGLINDSVPPKDPEEGGENCEGNADPESLSDIDDVEVDWYLHNE 230
Query: 407 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 466
EE YKKIIWEEMN+EYLEEQAAKEA A A AA +
Sbjct: 231 EETQYKKIIWEEMNKEYLEEQAAKEALA------------------------AELAARGI 266
Query: 467 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
+K++KR + K+S PA T EAT ML +K L SKIN + +L+
Sbjct: 267 VVEEGKKKRKRNEDTKSSTPADTPAEATYNMLKRKGLGSKINEGAVGELY 316
>gi|383865567|ref|XP_003708244.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Megachile
rotundata]
Length = 656
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 158/576 (27%), Positives = 251/576 (43%), Gaps = 124/576 (21%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTEIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 62 --EYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
E+GA SR ++ A + + L++ + + + FY +A+ R+ T+
Sbjct: 66 ATEFGATYHINGKESRGITLQNARKGITHLCMQLHLNQ--HCIDTSMNFYKMALNRHLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 290
H S +DII + ++HE S + + L + DT P +
Sbjct: 239 HEFNRSPADII-----KIVKVHE-------------STLRKRLIEFGDT--PSSA----L 274
Query: 291 CYEEFMTISEGLEGGADPPAFQVA---ERERMVKA------------------------- 322
EEFMT+ LE DPPAF+ A +RER+ K
Sbjct: 275 TLEEFMTVD--LEEEQDPPAFKAARKKDRERLQKLENIDTEINELQAEIDKQLDEQTIGK 332
Query: 323 --SAEENSSFERESDSPFM--SRVDKVQS------PEPES-------------IGVPKNC 359
++ + ERE F+ S +D ++S +P+S G+ N
Sbjct: 333 TRKRKDAAYLEREDTERFVRESNLDVIKSYVENDVDDPDSDLQDSNDTSNRLITGLGPNI 392
Query: 360 TTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM 419
+ + + ++ ++AT E + G + +D+DD E+D Y+ +E+E +K +W ++
Sbjct: 393 ASMGLISANDRENETNGQMNATFENNSGEIDIADLDDEELDSYIMSEKEAQFKHNLWNKV 452
Query: 420 NREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA 479
N EYL +Q KE + R K+ K
Sbjct: 453 NAEYLNQQKEKEEKRQKE---------------------KEEGKPEKKRRRTTKRNKTQT 491
Query: 480 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 492 ------PANTAGEAIEKMLQEKKISSKINYEVLKSL 521
>gi|380022853|ref|XP_003695250.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Apis
florea]
Length = 631
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 157/574 (27%), Positives = 250/574 (43%), Gaps = 122/574 (21%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTDIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR+ ++ A + + L + + + + FY +A+ R T+
Sbjct: 66 ATGFGATYHVNGKESRKITLQNAKKGITHLCMQLQLNQ--HCIDTSMNFYKMALNRQLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLKFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA I+ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRIVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 290
H S +DII + ++HE S + + L + DT P +
Sbjct: 239 HEFNRSPADII-----KIVKVHE-------------STLRKRLIEFGDT--PSSA----L 274
Query: 291 CYEEFMTISEGLEGGADPPAFQVA---ERERMVK----------ASAEENSSF------- 330
EEFMT+ LE DPPAF++A +RER+ + AE +
Sbjct: 275 TLEEFMTVD--LEEEQDPPAFKIARKKDRERLQRLENIDTEINELQAEIDKQLEDHRLGK 332
Query: 331 ------ERESDSPFM--SRVDKVQSPEPESIGVPKNCTTQTASNE-------GEGDHTKT 375
E+E F+ S +D +++ I P N + SN G G + +
Sbjct: 333 TRKRKDEKEDTDRFIRESNLDVIKNYVENDIDDPDNEIQDSESNNANNRLIIGLGPNIAS 392
Query: 376 PG--------------VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNR 421
G V+ E + G + +D+DD E+D Y+ +E+E +K +W ++N
Sbjct: 393 MGLISANNRENETKESVNINFENNSGEIDVADLDDEELDSYIMSEKEAQFKHNLWNKVNA 452
Query: 422 EYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEA 481
EYL +Q ++ ++K+++
Sbjct: 453 EYL---------------------------IQQKEKEEKRQKEKEEGKPEKKRRRTTKRN 485
Query: 482 KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
K+ PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 486 KSQAPANTAGEAIEKMLQEKKISSKINYEVLKSL 519
>gi|301095599|ref|XP_002896899.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
gi|262108546|gb|EEY66598.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
Length = 589
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 20/234 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGA-SRER 69
C CG +LE++N + F ++ G + G FV S+ YG SR
Sbjct: 24 VCVSCGTILEENNIVSSVEFQESGGGAHSVVGQFVSATASKAYGNIGTSGRNYGIESRAN 83
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +RQ+ L +G D V A R + +A+ RNFT GR+T+ V A+CLY+ CR+
Sbjct: 84 TLANGKKKIRQIAGMLRLG--DHYVDSAFRLFALALQRNFTHGRKTQTVIAACLYIVCRR 141
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+ P LLIDFS+ L INVY LG V+L+ C++L I L +DPS+++H+F +L
Sbjct: 142 ERSPHLLIDFSDKLQINVYVLGGVFLKFCKLLQIH-----LPLIDPSLYIHRFASQLNFA 196
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G + TA ++A+MKRDWI TGR+PSG+CGAAL ++A + + S D+++
Sbjct: 197 GKTHSIATTALRLVATMKRDWIETGRRPSGICGAALLIAARSQSVMCSLHDVMD 250
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 368 GEGDHTKTPGVDATTEA-------------SDGS-DNFSDIDDFEVDGYLHNEEEKHYKK 413
G+ +H+ +P A EA +D + D FSD+DD E++ L EE KK
Sbjct: 454 GDTEHSTSPTTSADDEAVSTVIRRRRSRDLADSTVDTFSDLDDDEINSLLLTREEAEKKK 513
Query: 414 IIWEEMNREYLEEQAAKEAAAAAAKAA 440
++WE+MN++Y++EQ K +A A
Sbjct: 514 LLWEKMNKDYIQEQEQKRLLGLSAPDA 540
>gi|927598|gb|AAC50170.1| TFIIIB 90 kDa subunit [Homo sapiens]
gi|1581601|prf||2116442A transcription factor IIIB
Length = 675
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 162/585 (27%), Positives = 241/585 (41%), Gaps = 157/585 (26%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQDGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+ S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLVLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR PSGLCG AL V+A H + + ++I
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRGPSGLCGGALLVAARMHDFRRTVKEVISVV- 253
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KV S + + L + +DT P + + +EFM I LE
Sbjct: 254 -------------------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK-----------------ASAEENSSFERESDSP--------- 337
DPP++ +R+ +K +S ++ E E+ P
Sbjct: 287 EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKRGGLQPGK 346
Query: 338 -FMSRVDKV-----------------QSPEPESI-GVPKNCTTQTASNEGEGDHTKTPGV 378
++ R +V Q PE I G P C Q S+ +TP +
Sbjct: 347 RWLHRGHRVQLVWRGGHRGRGAGSRGQPPEQRLIPGAPWWCPRQLGSSRKPRVGRQTPAL 406
Query: 379 ----------------------------DATTEASDGSDNFSDIDDFEVDGYLHNEEEKH 410
D + DG + S IDD E+D Y+ NE E
Sbjct: 407 GSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEAR 466
Query: 411 YKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSR 470
K +W N EYL EQ KEA A K EL
Sbjct: 467 VKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY--------- 499
Query: 471 KEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 500 KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 544
>gi|342319941|gb|EGU11886.1| Transcription factor TFIIIB complex subunit brf1 [Rhodotorula
glutinis ATCC 204091]
Length = 678
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 165/588 (28%), Positives = 255/588 (43%), Gaps = 101/588 (17%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C+SC +Q C RCG VL ++ +E F + +G + + G++V
Sbjct: 3 CTSCGEDSVLEMTEHAQTVCTRCGTVLSENAIVSEIQFGETGSGAAMVQGSYVGADQTRA 62
Query: 57 --------RTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
R +QS+ SRE+ + + ++ L + S+ + +VA RF+ +AV +
Sbjct: 63 RAPGGFRQRGVQSQ--ESREQTLANGRRRIMELATGLRL--SEHLQNVATRFFNLAVNMS 118
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
FTKGRRT+ V A+CLY ACRQ + +LIDFS+ L INV+ LG+ YL+L + L I
Sbjct: 119 FTKGRRTQYVAAACLYAACRQANGTQMLIDFSDLLEINVFVLGSTYLKLVRQLNIN---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
+ VDP I++ +F L G +KV A ++ M RDW+ GR+PSG+CGA L ++
Sbjct: 175 -IPVVDPVIYITRFAALLDFGEETQKVALDATRLVNRMGRDWMQIGRRPSGICGACLLLA 233
Query: 228 ALTHGLKFSKSDIIE-----DFMARKK--ELHEGVAANLPNNGPKVSGMNEVLCKHKDTG 280
A + + S ++++ D RK+ E E + NL VS + +
Sbjct: 234 ARMNNFRRSIEEVVQVVKIADVTLRKRLAEFKETASGNL-----TVSDFRSIWLEETHDP 288
Query: 281 KPFACGL----------CRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF 330
+A GL R E+ + SE D ++AERE A AE++ +
Sbjct: 289 PAYAVGLKKEEDARKEQARKMREDSIAASETDSVVGDRAFRELAERE--ATADAEDDIA- 345
Query: 331 ERESDSPFMSRVDKVQS-----------PEPESIGVPKNCTTQTASNEGEGDHTKTPGVD 379
S SP R ++ P+P + + K + EG P D
Sbjct: 346 ---SSSPVRERARGKENEVEVEGAMLPPPKPSAKALGKRKRVEPEEEEG-----GAPSSD 397
Query: 380 ATTEASDGSDNFSDIDDFE-VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
A +E D ++ + D E D + E + + + +++ E LE Q K A +
Sbjct: 398 AASEREDVAEELLEGDGHEQYDAVIEGELQNYLGSNVGVKLSHE-LESQEQKRRAKISQS 456
Query: 439 AALEASYKNCPEGL---------------QAAQELAAAAAAAVAKSRKEKQQKRAAEAK- 482
A E + EGL Q +L K EKQ E K
Sbjct: 457 PAYELDTNDSLEGLDEEELDAFICTEEEVQIKAKLWMEHNKEYLKELAEKQTGPDGELKP 516
Query: 483 -NSGPAQ-------------TALEATRRMLTKKRLSSKINYDVLEKLF 516
N P + TA +AT +ML KK+ S KINYD ++ LF
Sbjct: 517 INKRPRKKTKPRDGANPTGLTAADATTKMLEKKKFSKKINYDAIKNLF 564
>gi|328785533|ref|XP_623775.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform 2
[Apis mellifera]
Length = 661
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 156/578 (26%), Positives = 252/578 (43%), Gaps = 126/578 (21%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTDIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR+ ++ A + + L + + + + FY +A+ R T+
Sbjct: 66 ATGFGATYHVNGKESRKITLQNAKKGITHLCMQLQLNQ--HCIDTSMNFYKMALNRQLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLKFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA I+ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRIVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 290
H S +DII + ++HE S + + L + DT P +
Sbjct: 239 HEFNRSPTDII-----KIVKVHE-------------STLRKRLIEFGDT--PSSA----L 274
Query: 291 CYEEFMTISEGLEGGADPPAFQVA-----------------------------ERERMVK 321
EEFMT+ LE DPPAF++A E R+ K
Sbjct: 275 TLEEFMTVD--LEEEQDPPAFKIARKKDRERLQRLENIDTEINELQAEIDKQLEDHRLGK 332
Query: 322 ASAEENSS-FERESDSPFM--SRVDKVQSPEPESIGVP----KNCTTQTASNE---GEGD 371
A ++++ E+E F+ S +D +++ I P +N + A+N G G
Sbjct: 333 ARKRKDAAIIEKEDTDRFIRESNLDVIKNYVENDIDDPDNEIQNSESSNANNRLIIGLGP 392
Query: 372 HTKTPGVDATT--------------EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWE 417
+ + G+ +T E + G + +D+DD E+D Y+ +E+E +K +W
Sbjct: 393 NIASMGLISTNNRENETKESVNINFENNSGEIDVADLDDEELDSYIMSEKEAQFKHNLWN 452
Query: 418 EMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR 477
++N EYL +Q + ++K+++
Sbjct: 453 KVNAEYL---------------------------IQQKEREEKRQKEKEEGKPEKKRRRT 485
Query: 478 AAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
K+ PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 486 TKRNKSQAPANTAGEAIEKMLQEKKISSKINYEVLKSL 523
>gi|348671349|gb|EGZ11170.1| hypothetical protein PHYSODRAFT_347658 [Phytophthora sojae]
Length = 672
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 20/234 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGA-SRER 69
C CG +LE++N + F ++ G + G FV S+ YG SR
Sbjct: 24 VCVSCGTILEENNIVSSIEFQESGGGAHSVVGQFVSATASKSYGNIGTSGRNYGLESRAN 83
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +RQ+ L +G D V A R + +A+ RNFT GR+T+ V A+CLY+ CR+
Sbjct: 84 TLANGKKKIRQIAGMLRLG--DHYVDSAFRLFALALQRNFTHGRKTQTVIAACLYIVCRR 141
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+ P LLIDFS+ L INVY LG V+L+ C++L I L +DPS+++H+F +L
Sbjct: 142 ERSPHLLIDFSDKLQINVYVLGGVFLKFCKLLQIH-----LPLIDPSLYIHRFASQLNFA 196
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G + TA ++A+MKRDWI TGR+PSG+CGAAL ++A + + S D+++
Sbjct: 197 GKTHSIATTALRLVATMKRDWIETGRRPSGICGAALLIAARSQSVMCSLHDVMD 250
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 367 EGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 426
E EGD D +A + D FSD+DD E++ L EE KK++WE+MN+++++E
Sbjct: 557 ENEGD-------DEKGDAEEAVDTFSDLDDDEINSLLLTREEAEKKKLLWEKMNKDFIQE 609
Query: 427 QAAKEAAAAAAKAA 440
Q K +A A
Sbjct: 610 QEQKRLLGLSAPDA 623
>gi|426192806|gb|EKV42741.1| hypothetical protein AGABI2DRAFT_78178, partial [Agaricus bisporus
var. bisporus H97]
Length = 590
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 162/566 (28%), Positives = 247/566 (43%), Gaps = 106/566 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
CS C V + C CG V+E++ E F + A G + + G+FV
Sbjct: 1 CSDCGGTVIEYDQAAGNGFCVTCGTVVEENTIVNEIAFGETANGAAIVQGSFVAQGATHA 60
Query: 59 -IQSEYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ YG SRE+ +E A ++ + + L + E +V A+R Y +AV FTKG
Sbjct: 61 RMGGPYGNRSSSDSREQTIENATKKIQNIASILRLSEV--VVLAARRMYTLAVEHKFTKG 118
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q+L + L
Sbjct: 119 RKSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQILNLR-----LP 173
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 174 LVDPSHYISRFA-ALLEFGDETHKVATDAVRLVQRFDRDWMTKGRRPAGICGAALLLAAR 232
Query: 230 THGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 289
+ + S +I++ V + L K D K G
Sbjct: 233 MNNFRRSIEEIVQ----------------------VVKIADTTLKKRLDEFKATPSGSL- 269
Query: 290 SCYEEFMTISEGLEGGADPPAFQVA-ERERMVKASAEENSSFERESDSPFMSRVDK--VQ 346
+F ++ L+ DPPAF ERE AE +SF P +D +Q
Sbjct: 270 -TLADFRSV--WLDEEMDPPAFTRGKEREE-----AERKASFVGLGQLPQNQNIDPALLQ 321
Query: 347 SPEPESIGV--------PKNCTTQTASN---EGEGDHTKTPGVDATTEASD--------- 386
P G P + +T SN E + +EA D
Sbjct: 322 QPNVVMPGTDTPTLSLPPTDFVDETVSNVLAEEVSTFLQNSQGAKLSEALDEAEQRRLAQ 381
Query: 387 --GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 444
+D +D+ E++ ++ +E+E K+ +W E+NR+YLE A + L +S
Sbjct: 382 MTMADELMGLDEEELNRFILSEDEVRIKERVWVELNRDYLEAIAGSIPGSRYIFHMLTSS 441
Query: 445 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RL 503
K RK + + A S TA E+ R ++ K +
Sbjct: 442 QK-----------------------RKSNKPRDATTPSGS----TAAESVRNLIKKNPKY 474
Query: 504 SSKINYDVLEKLFDDSVCLYSISICL 529
S +INYD L+ LF D+ S S L
Sbjct: 475 SKRINYDALKDLFVDTNTPPSFSQSL 500
>gi|428671958|gb|EKX72873.1| transcription factor IIIb subunit, putative [Babesia equi]
Length = 515
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 227/500 (45%), Gaps = 56/500 (11%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------ 57
C+ C + +L C CG VL+++ + + +N G S L G F+
Sbjct: 6 CTYCGSQDLESVKHLGELVCQDCGAVLQENTVLEDLQYSENRLGSSTLVGQFIPVSGIRP 65
Query: 58 -TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
T+ S SR+ ++++ D++ ++ AL + S E ++ A+ Y +AV RNFT GR
Sbjct: 66 GTLSSGSLPSRDHVLKRGCDNIERI--ALRLNLSPEHINKAQAIYKLAVQRNFTMGRNNL 123
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V + CLY CR++ P LLIDFS+ L V +G ++++L ++L+I+ + VDPS
Sbjct: 124 HVASCCLYTVCRREKTPHLLIDFSDILQTPVKTIGQIFMKLVRMLHIS-----VPNVDPS 178
Query: 177 IFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
IF +F +L N +KV T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+
Sbjct: 179 IFFERFASKLYLKDNIQKVISTGVRIIQAMNRDWLCTGRRPTGLCGAALVVAARFHGISL 238
Query: 236 SKSDII-------EDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLC 288
D+ M R E + AA+L K S +V K C +
Sbjct: 239 PAEDVAAVVRISHPTIMKRLSEFKDTCAAHL-----KCSEFEKVDLDTLPNIKLPPCLIS 293
Query: 289 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS---FERESDSPFMSRVDKV 345
+ +E ++ L+G +D AE + K AE +S+ F+R+SD P +S +
Sbjct: 294 KYAAKE-RKYAKSLDGRSDVSTTDTAEYDLRGKDYAETDSTYSDFDRQSD-PCLSENSPI 351
Query: 346 QSPEPESIGVPKNCTTQ--------TASNEGEGDHTKTPGV------DATTEASDGSDNF 391
P +I C Q A + E P + + T D +
Sbjct: 352 LGPINVNIPTDVLCNDQPTAAQINNIAQSILENFKVNQPSIGGLCKFNETESCEDSELSS 411
Query: 392 SDIDDFEVDG-YLHNEEEKHYKKIIWEEMNREYLE-------EQAAKEAAAAAAKAA--L 441
D +D +V + E EK K +W+E+ ++ ++ E+ +E + A K
Sbjct: 412 DDEEDIQVFAEMILPESEKESKTKLWDEITKDIMQKVMRRQKERKKREESGQAIKKRKYT 471
Query: 442 EASYKNCPEGLQAAQELAAA 461
Y + PE AA+ A
Sbjct: 472 RRKYMDYPEANNAAESTKMA 491
>gi|340722869|ref|XP_003399823.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
terrestris]
Length = 659
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 162/579 (27%), Positives = 251/579 (43%), Gaps = 129/579 (22%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTNIETDPARGDAVCTDCGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR ++ A + + L + + + + FY +A+ R T+
Sbjct: 66 ATGFGATYHVNGKESRGITLQNARKGITHLCMQLQLNQ--HCIDTSMNFYKMALNRQLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 290
H S +DII + ++HE S + + L + DT P +
Sbjct: 239 HEFNRSPADII-----KIVKVHE-------------STLRKRLIEFGDT--PSSA----L 274
Query: 291 CYEEFMTISEGLEGGADPPAFQVA---ERERM---------------VKASAEEN----- 327
EEFMT+ LE DPPAF+ A +RER+ + EE+
Sbjct: 275 TLEEFMTVD--LEEEQDPPAFKAARKKDRERLQRLNIDTEINELQAEIDKQLEEHRLGKM 332
Query: 328 ------SSFERESDSPFM--SRVDKVQS------PEPES---------------IGVPKN 358
+S ER F+ S +D ++ +P+S G+ N
Sbjct: 333 KKRKDAASIERADTDRFIRESNLDVIKHYVGNDVDDPDSDFQDSEMNNINDRLITGLGPN 392
Query: 359 CTTQ--TASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIW 416
+ ++N+ E + TK P V+ E G + +D+DD E+D Y+ +E+E +K +W
Sbjct: 393 IASMGLISTNDRENE-TKDP-VNTNFENDTGEIDVADLDDEELDSYIMSEKEAQFKHNLW 450
Query: 417 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 476
++N EYL +Q KE + R K+
Sbjct: 451 NKVNAEYLNQQKEKEERRQKE---------------------KEEGKPEKKRRRTTKRN- 488
Query: 477 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KN PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 489 -----KNQVPANTAGEAIEKMLQEKKISSKINYEVLKSL 522
>gi|350403589|ref|XP_003486845.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
impatiens]
Length = 659
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 159/577 (27%), Positives = 244/577 (42%), Gaps = 125/577 (21%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTNIETDPARGDAVCTDCGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR ++ A + + L + + + + FY +A+ R T+
Sbjct: 66 ATGFGATYHVNGKESRGITLQNARKGITHLCMQLQLNQ--HCIDTSMNFYKMALNRQLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 290
H S +DII + ++HE S + + L + DT P +
Sbjct: 239 HEFNRSPADII-----KIVKVHE-------------STLRKRLIEFGDT--PSSA----L 274
Query: 291 CYEEFMTISEGLEGGADPPAFQVA---ERERM---------------VKASAEEN----- 327
EEFMT+ LE DPPAF+ A +RER+ + EE+
Sbjct: 275 TLEEFMTVD--LEEEQDPPAFKAARKKDRERLQRLNIDTEINELQAEIDKQLEEHRLGKM 332
Query: 328 ------SSFERESDSPFM--SRVDKVQSPEPESIGVPKNCTTQTASNE-------GEGDH 372
+S ER F+ S +D ++ + P N + N G G +
Sbjct: 333 KKRKDAASIERADTDRFIRESNLDVIKHYVGNDVDDPDNDFQDSEMNNINDRLITGLGPN 392
Query: 373 TKTPG--------------VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEE 418
+ G V+ E G + +D+DD E+D Y+ +E+E +K +W +
Sbjct: 393 IASMGLISINDRENETKESVNTNFENDTGEIDVADLDDEELDSYIMSEKEAQFKHNLWNK 452
Query: 419 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 478
+N EYL +Q KE + R K+
Sbjct: 453 VNAEYLNQQKEKEERRQKE---------------------KEEGKPEKKRRRTTKRN--- 488
Query: 479 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KN PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 489 ---KNQVPANTAGEAIEKMLQEKKISSKINYEVLKSL 522
>gi|219129783|ref|XP_002185060.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403555|gb|EEC43507.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 601
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 150/559 (26%), Positives = 244/559 (43%), Gaps = 90/559 (16%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
++C +C C CG V+E++ + FV+ A G S + G FV S
Sbjct: 67 IFCPNCGSTSIEQHDASGASVCTECGVVVEENAIVSAVEFVEGAGGASSMVGQFVSATSS 126
Query: 62 E------------------YG---ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRF 100
+ YG SRE + ++++ + L +G V A R
Sbjct: 127 KAYTGGPGGGGPGGGAGGRYGFSRDSRETTLANGRRRIQEVASRLRLGT--HFVDAAHRL 184
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
+ IAV RNF +GRRT V A+CLY+ACRQ+ +LIDFS+ L +NVY LG +L+ ++
Sbjct: 185 FTIAVERNFVQGRRTTHVVAACLYIACRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRL 244
Query: 161 LYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L + L+ +DP++++++F L L V TA ++A MKRDWI GR+P+G+
Sbjct: 245 LGLK-----LEIIDPALYIYRFAAHLDLDEKANAVSLTALRLVARMKRDWIVAGRRPAGI 299
Query: 220 CGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT 279
C AAL +++ HG FS+ H+ V L +V G V + K+
Sbjct: 300 CAAALLIASRAHG--FSRH-------------HQDVTRIL-----RVCGWT-VTNRVKEF 338
Query: 280 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAE-RERMVKASAEENSSFERESDSPF 338
+ L E+F + +E ADPP F+ + RE KA + N P
Sbjct: 339 EHTPSAAL---TLEQFQKVDLDVE--ADPPVFRRNKFREARAKAIRQGNVELLESESGPL 393
Query: 339 MSR---VDKVQSPEPES-IGV-----PKNCTTQT----------ASNEGEGDHTKTPGVD 379
+ VD + ++ IG K QT S+ + + +
Sbjct: 394 ATTGPVVDGDGDGQLDTEIGAGGKMGAKKVQLQTLYKSLAKELLPSDAAQKQRPPSAPTE 453
Query: 380 ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKA 439
S+ D + E + +E+ K++I+ ++N++YL Q KE+ + +A
Sbjct: 454 TQFNLSEWKAGMPDTMEDEFANIFRDNDEEREKEVIFNKINKDYLVTQKRKESERLSVEA 513
Query: 440 ALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLT 499
+L K + A A ++A +RK+K + K G T E +
Sbjct: 514 SLLDREKT---------DAAQAESSARYNTRKKKSR------KADGSIMTTEEQLLAAVA 558
Query: 500 KKRLSSKINYDVLEKLFDD 518
+++S KINYD L +FD+
Sbjct: 559 ARKVSRKINYDALSSIFDE 577
>gi|156341179|ref|XP_001620678.1| hypothetical protein NEMVEDRAFT_v1g147404 [Nematostella vectensis]
gi|156205891|gb|EDO28578.1| predicted protein [Nematostella vectensis]
Length = 522
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 168/583 (28%), Positives = 237/583 (40%), Gaps = 138/583 (23%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
CS+C P C CG VLED+ +E F +N+ G + G FV +
Sbjct: 5 CSNCGGSDIDLDPSRGDAVCMGCGSVLEDNIIVSEVQFQENSLGGTSAIGQFVSSEGKEQ 64
Query: 59 --IQSEYGASRERL-----MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
S G + L + K + Q+ + L + + + A FY +AV + T+
Sbjct: 65 FGTPSRGGGTYVHLNHFWSLFKGRKRINQLGHQLQMNQ--HCIDTAYNFYKLAVNKRLTR 122
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GRRT V A+CLYL CR + P +L+DFS+ L I+V+ LG YL+L Q LYI L
Sbjct: 123 GRRTAHVVAACLYLVCRTERTPHMLLDFSDILQIDVFTLGRAYLKLAQELYIN-----LP 177
Query: 172 QVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+DP +++H+F +L G + V TA +++ MKRDWI GR+PSGLCGAAL V++
Sbjct: 178 AIDPCLYIHRFAHKLELGEKEHDVAVTALRLVSRMKRDWIHHGRRPSGLCGAALLVASRL 237
Query: 231 HGLKFSKSDI-----IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFAC 285
H S ++ I D RK+ L + KDT
Sbjct: 238 HSFNRSVREVVKVVRISDTTIRKR-----------------------LGEFKDTPSS--- 271
Query: 286 GLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKAS-------AEENSSFERESDSPF 338
+ +EF I LE DPP F A ++ +A +E F E D+
Sbjct: 272 ---QLTIDEFHKID--LEEEQDPPCFTHARKKAKQQAEDVVNPEITQEVEKFRTEIDNIL 326
Query: 339 MSR--------VDKVQSPEPESIG------VPKNCTTQTASNEG---EGD---------- 371
R +K SP + G V N AS G GD
Sbjct: 327 GIRQEIRNQENTEKTMSPSDQRAGGESPASVACNSVDVAASVSGSSTRGDCFASYDMTQD 386
Query: 372 -------------------HTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYK 412
H + P + E S + + +DD E+D L E+E K
Sbjct: 387 EEGKAILFQKLCCKTSSMHHHRFPNI--VREESGEELDLTGLDDVELDKCLLTEDEIKVK 444
Query: 413 KIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKE 472
IW E N+EYLE+ KE A + Q + K
Sbjct: 445 TKIWMEENKEYLEKMKEKEEQEAQDR----------------EQGIVKPEKKKRKYKSKN 488
Query: 473 KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KQ PA TA EA +ML ++++SSKINY+VL L
Sbjct: 489 KQ-----------PASTAGEAIEKMLVERKISSKINYEVLRDL 520
>gi|168035366|ref|XP_001770181.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678558|gb|EDQ65015.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 166
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V RNFT+GR T +V +CLY+ CRQ++KP++LIDFS+ L NVY LGAV+LQLCQ+L +
Sbjct: 1 VERNFTRGRPTPRVAGACLYIVCRQENKPYMLIDFSDSLQTNVYVLGAVFLQLCQLLRLE 60
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ + VDPS+F+H+F DRL G V ++A ++ASMKRDW+ TGR+PSG+CGAA
Sbjct: 61 QHPIMQRPVDPSLFIHRFADRLQFGKKMHAVANSALRLVASMKRDWMQTGRRPSGVCGAA 120
Query: 224 LYVSALTHGLKFSKSDII 241
L+++A HG + SK+D++
Sbjct: 121 LFIAAHIHGFERSKADVV 138
>gi|198427438|ref|XP_002130866.1| PREDICTED: similar to LOC494758 protein [Ciona intestinalis]
Length = 657
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 158/594 (26%), Positives = 250/594 (42%), Gaps = 139/594 (23%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C P C CG VLE++ +E + +NA G S + G FV T S
Sbjct: 5 CPNCKSSEFDVDPARGDTVCMNCGSVLEENRIVSEISIQENADGSSSVVGQFVTTEGSYN 64
Query: 62 ------EYGA---SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+YG SR+ ++K + +R M LN+ V A F+ +A+++ ++G
Sbjct: 65 PHLSGFQYGIGKESRQITLDKGKNQIRDMAAQLNLNR--HCVDTAFNFFKMAISKRLSRG 122
Query: 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ 172
RR + A+CLY+ CR + P LL+DFS+ +NV+ LG V+L L + L+I L
Sbjct: 123 RRITHIVAACLYMTCRTEGTPHLLLDFSDITQVNVFILGKVFLLLAKELHIN-----LPV 177
Query: 173 VDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
+DP +++ +F RL +V A +++ MKRDWI TGR+PSGLCGAAL V+A H
Sbjct: 178 LDPCMYITRFAHRLDFNEKTHEVSVAAMRLVSRMKRDWIHTGRRPSGLCGAALLVAARLH 237
Query: 232 GLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSC 291
G +D+++ +AR H+ + L NE P + +
Sbjct: 238 GFNCDLNDVVK--VARIG--HDTIRKRL----------NEF------ESTPSS----KLT 273
Query: 292 YEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE------------------ 333
EFM I LE DPPAF + + + E +S E E
Sbjct: 274 INEFMKID--LEAEHDPPAFINSRIKAKIHQLEAEGASLENEIGKLSNVIDDKLTQQSSR 331
Query: 334 ------SDSPFMSRVDKV-------------------QSPEPESI---------GVPK-- 357
P S V++V S PE++ G+P+
Sbjct: 332 PASPANVSKPSNSSVNRVPEHVSNDDDPELRAAATFMHSEHPEAVAQSLLSPKRGLPQPT 391
Query: 358 ----NCTTQTASNEGEGDHTKTPGVDATTEASD----GSDNFSDID-----DFEVDGYLH 404
T T + G T +T SD +N ++D D E+D L
Sbjct: 392 RQGFRSTGPTPTAASLGLRTSIDECLSTPSDSDRLHENDNNNGELDLTGIDDNEIDKLLL 451
Query: 405 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 464
+ E K+ IW + E+++E K +E KN
Sbjct: 452 SPHESEIKQRIWMKEYGEFVKELEEKREI-----KRIENEKKN----------------- 489
Query: 465 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
R+ ++ K+ + G ++TA EA ++++++RLS+KINY+ L+K +D
Sbjct: 490 -----RRPRKFKQVRYKEYYGESRTAGEAIEKLVSRQRLSNKINYEALKKATED 538
>gi|146414780|ref|XP_001483360.1| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 144/545 (26%), Positives = 250/545 (45%), Gaps = 83/545 (15%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERLME 72
+ C RCG V E++ +E F + ++G + + G V Q+ +G SRE+ ++
Sbjct: 26 VSCSRCGTVQEENPIVSEVQFGELSSGAAVVQGTMVGADQTRATFGGRQNAMESREQTLQ 85
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
++++ A+ I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 86 NGRKKIKRIATAMRI--PDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKT 143
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
P +LIDFS+ L I+VY LGA +L++ + L+I + L DPS+F+ F +RL G
Sbjct: 144 PHMLIDFSSRLQISVYSLGATFLKMVRALHITN----LPLADPSLFIQHFAERLDFGDLL 199
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKEL 251
KV A + M DWI GR+P+G+ GA + ++A + + S ++I+ ++ L
Sbjct: 200 TKVIKDAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETL 259
Query: 252 HEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTI---------SEGL 302
+ + +S + L + D P + R E+ + I +E L
Sbjct: 260 QRRLNEFKKTSSGALSVADFRLLEQMDPANPPSFNKNR---EQELRIAQELQQAQSTETL 316
Query: 303 EGGADPPAFQ---------------VAERE------RMVKASAE--ENSSFERESDSPFM 339
GG A + ++E+E R+V+A + +NS + SD
Sbjct: 317 LGGETSSAKEAHKQKLLKTILKDCDLSEQEISTQLQRIVQAQQKSLQNSMYTTPSDRQGD 376
Query: 340 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEV 399
+ +D+V + P+N + E D +T + T +F+D+DD E+
Sbjct: 377 ASIDRV------DLDKPRNLSKNLPRTE---DILQTVSLHPT--------DFTDLDDEEL 419
Query: 400 DGYLHNEEEKHYKKIIWEEMNREYL---EEQAAKEAAAAAAKAALEASYKNCPE--GLQA 454
+ EEE K+ +W +N ++L E + KE A + K P+ G++
Sbjct: 420 SLFKLTEEEHRLKERVWTGLNHDFLLAQERKRLKEEADELTGNTSGSKRKRKPKASGIED 479
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
E+ A A ++G TA ++ +RML+KK S KINY L
Sbjct: 480 LNEMGMGEALA-----------NIGVDDSTGEPLTAADSAKRMLSKKSFSKKINYATLGD 528
Query: 515 LFDDS 519
LF ++
Sbjct: 529 LFGET 533
>gi|190347671|gb|EDK39991.2| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 142/545 (26%), Positives = 243/545 (44%), Gaps = 83/545 (15%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERLME 72
+ C RCG V E++ +E F ++++G + + G V Q+ +G SRE+ ++
Sbjct: 26 VSCSRCGTVQEENPIVSEVQFGESSSGAAVVQGTMVGADQTRATFGGRQNAMESREQTLQ 85
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
++++ A+ I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 86 NGRKKIKRIATAMRI--PDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKT 143
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
P +LIDFS+ L I+VY LGA +L++ + L+I + L DPS+F+ F +RL G
Sbjct: 144 PHMLIDFSSRLQISVYSLGATFLKMVRALHITN----LPLADPSLFIQHFAERLDFGDLL 199
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII-------EDF 244
KV A + M DWI GR+P+G+ GA + ++A + + S ++I+ E
Sbjct: 200 TKVIKDAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETL 259
Query: 245 MARKKELHEGVAANL------------PNNGPKVSGMNEVLCK------HKDTGKPFACG 286
R E + + L P N P + E + + + G
Sbjct: 260 QRRLNEFKKTSSGALSVADFRSSEQMDPANPPSFNKNREQELRIAQELQQAQSTETLLGG 319
Query: 287 LCRSCYEE-----FMTISEGLEGGADPPAFQVAERERMVKASAE--ENSSFERESDSPFM 339
S E TI + + + Q+ +R+V+A + +NS + SD
Sbjct: 320 ETSSAKEAHKQKLLKTILKDCDLSEQEISTQL---QRIVQAQQKSLQNSMYTTPSDRQGD 376
Query: 340 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEV 399
+ +D+V + P+N + E D S +F+D+DD E+
Sbjct: 377 ASIDRV------DLDKPRNLSKNLPRTE-----------DILQTVSSHPTDFTDLDDEEL 419
Query: 400 DGYLHNEEEKHYKKIIWEEMNREYL---EEQAAKEAAAAAAKAALEASYKNCPE--GLQA 454
+ EEE K+ +W +N ++L E + KE A + K P+ G++
Sbjct: 420 SLFKLTEEEHRLKERVWTGLNHDFLLAQERKRLKEEADELTGNTSGSKRKRKPKASGIED 479
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
E+ A A ++G TA ++ +RML+KK S KINY L
Sbjct: 480 LNEMGMGEALA-----------NIGVDDSTGEPLTAADSAKRMLSKKSFSKKINYATLGD 528
Query: 515 LFDDS 519
LF ++
Sbjct: 529 LFGET 533
>gi|425768851|gb|EKV07363.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum Pd1]
gi|425770184|gb|EKV08657.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum PHI26]
Length = 740
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 158/576 (27%), Positives = 242/576 (42%), Gaps = 123/576 (21%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA---------SRER 69
C CG V+ ++N +E TF ++++G + + G+FV Q+ YG SRE
Sbjct: 75 VCTGCGTVISENNIVSEVTFGESSSGAAVVQGSFVGEDQTHVRSYGPGFQRGGAMESREM 134
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ M Q+ AL I ES A + + +AV NF +GRRT+ V A CLY+ACR
Sbjct: 135 TEQNGNRYMLQLSRALTIPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRR 192
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +L
Sbjct: 193 QNGNTVMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEF 252
Query: 189 GGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMAR 247
G + V A I+ M RDW+TTGR+P+GLCGAAL ++A + + + +++ ++ +
Sbjct: 253 GPSLMAVAGEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRRTVREVV--YIVK 310
Query: 248 KKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGAD 307
E ++ L G SG V ++F ++ LE D
Sbjct: 311 VTETT--ISQRLNEFGSTESGELTV--------------------DQFRSVQ--LENTHD 346
Query: 308 PPAFQVAE--RERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIG----------- 354
PP+F R+ +K E + E ++DSP S + VQ P ++ G
Sbjct: 347 PPSFTRGREGRKSRIKKLPETAAELE-DNDSPTESEAESVQPPRIDADGFAIPSLPIDPA 405
Query: 355 -------------------VPKNCTTQTASNEGEGDHTKTPGVDATTEASD--------- 386
V ++ + ++G+G TP A AS+
Sbjct: 406 LTAISHGRRASVIAKAVNEVVEDIKNEPVHSKGKGKRQPTPEPSAEQVASEAALEDEMRS 465
Query: 387 ----GSDNFSDI----------------------DDFEVDGYLHNEEEKHYKKIIWEEMN 420
GS I DD EV L E K+ IW N
Sbjct: 466 MLAQGSSMIESIGSEQPTRPTVSDSTEIDAAEFEDDPEVANCLLLPAEVEIKESIWVTEN 525
Query: 421 REYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE 480
+EYL Q AK A K ALE S + ++ V E + R++
Sbjct: 526 KEYLRTQQAK-----ALKRALEESTGGG--APRKPRKRRRGRLGDVTYLEGEGEDGRSSR 578
Query: 481 AKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
A T EATRRML ++ S KINY +L+ L+
Sbjct: 579 ------ASTPAEATRRMLERRGYSKKINYSLLDTLY 608
>gi|328770639|gb|EGF80680.1| hypothetical protein BATDEDRAFT_24490 [Batrachochytrium
dendrobatidis JAM81]
Length = 491
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 144/525 (27%), Positives = 242/525 (46%), Gaps = 91/525 (17%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQS-----QLSGNFVRT--------IQSEYGAS 66
+ C CG VLE++ +E TF + + G + QLS R I++ S
Sbjct: 22 HIVCLECGAVLEENTIVSEVTFSETSKGSAIADGFQLSTGQARASNRGTFGLIRTGGQES 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE+ ++ ++++ N I ++ +V A+RF+ +AV NFTKGR++ V A+CLY+
Sbjct: 82 REQTLQNGHRRIQEVANQPQIRMNERLVGHARRFFNVAVVNNFTKGRKSGNVVAACLYIV 141
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + +LIDF++ L+ NVY++GA +L LC++ + + + VDPS+++ +F +L
Sbjct: 142 CRLEKTAHMLIDFADALSTNVYQVGATFLALCKISGV----DKMPLVDPSLYISRFAAKL 197
Query: 187 LPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G + + + A ++ M RDW+ TGR+P+G+C A+L+V++ H + +II +
Sbjct: 198 DFGEDTQNIVKDANRLVQRMCRDWMQTGRRPAGICAASLFVASRMHNHNRTIREII--LV 255
Query: 246 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 305
+ E P S ++ ++F TI LEG
Sbjct: 256 VKICEATLRRRLREFRETPS-SNLS---------------------VQDFQTI--WLEGE 291
Query: 306 ADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTAS 365
DPP+F + + AS FE +S+ +++++ S ES+ +
Sbjct: 292 RDPPSFAPPKTRKHEPAS----QLFE-DSNGDSKAKIEQAFSSLKESVLAGDDDEDLEDL 346
Query: 366 NEGE---------GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH-NEEEKHYKKII 415
NE + + KT DAT + + DD E+ + EE +K+ I
Sbjct: 347 NEQQLLSFEQSLIQVYNKTEA-DATHQIHYSDNLSDLDDDQEIQAMIDVTPEEVEFKEAI 405
Query: 416 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 475
W E N+E++ Q AK AA +A+S K K +
Sbjct: 406 WTEENKEWILRQQAK-----------------------------AALGIGLAESEKRKPK 436
Query: 476 KRAAEAKNSGPAQTALEATRRM-LTKKRLSSKINYDVLEKLFDDS 519
KR + S A TA EA + + ++K LS KINY VLE LF+ +
Sbjct: 437 KRPRVIR-SYEAPTAAEAAKNLVMSKPTLSKKINYGVLETLFEKT 480
>gi|355673453|gb|AER95177.1| BRF1-like protein, subunit of RNA polymerase III transcription
initiation factor IIIB [Mustela putorius furo]
Length = 610
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 146/523 (27%), Positives = 226/523 (43%), Gaps = 102/523 (19%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
L G F + E SR + ++ + + + L + + + A F+ +AV+++ T
Sbjct: 3 LGGGFHVNLGKE---SRAQTLQNGRRQIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLT 57
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GRR V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 58 RGRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA--- 114
Query: 171 KQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 115 --IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 172
Query: 230 THGLKFSKSDII---------------------------EDFMA---------------- 246
H + + ++I ++FM
Sbjct: 173 MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEGECDPPSYTAGQ 232
Query: 247 ---RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEE--FMTISEG 301
R K+L + ++ L + ++S + + + +P A G S + +
Sbjct: 233 RKLRMKQLEQVLSKKLEDVEGEISSYQDAIESELENSRPKAKGTLASLTRDGSVEDSASS 292
Query: 302 LEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTT 361
L G DP E E + A++ N F RE +S ++ PE P +
Sbjct: 293 LFGEEDP------EDEELQAAASHLNKDFYRELLGAGVSSSSG-EAGGPEGGSRPPALES 345
Query: 362 -----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYK 412
TA++ G D + + + T DG + S IDD E+D Y+ NE E K
Sbjct: 346 LLGPLPTAASLGISDSIRECISSQSQEPTGARGDGELDLSGIDDLEIDRYILNEAEARVK 405
Query: 413 KIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKE 472
+W N EYL EQ KEA A K EL KE
Sbjct: 406 AELWMRENAEYLREQREKEARIAKEK------------------ELGIY---------KE 438
Query: 473 KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
+ K++ + + A TA EA +ML +K++SSKINY VL+ L
Sbjct: 439 HKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLQDL 481
>gi|255942361|ref|XP_002561949.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586682|emb|CAP94327.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 739
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 158/576 (27%), Positives = 242/576 (42%), Gaps = 123/576 (21%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA---------SRER 69
C CG V+ ++N +E TF ++++G + + G+FV Q+ YG SRE
Sbjct: 75 VCTGCGTVISENNIVSEVTFGESSSGAAVVQGSFVGEDQTHVRSYGPGFQRGGAMESREM 134
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ M Q+ AL I ES A + + +AV NF +GRRT+ V A CLY+ACR
Sbjct: 135 TEQNGNRYMLQLSRALTIPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRR 192
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +L
Sbjct: 193 QNGNTVMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEF 252
Query: 189 GGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMAR 247
G + V A I+ M RDW+TTGR+P+GLCGAAL ++A + + + +++ ++ +
Sbjct: 253 GPSLMAVAGEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRRTVREVV--YIVK 310
Query: 248 KKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGAD 307
E ++ L G SG V ++F ++ LE D
Sbjct: 311 VTETT--ISQRLNEFGSTESGELTV--------------------DQFRSVQ--LENTHD 346
Query: 308 PPAFQVAE--RERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIG----------- 354
PP+F R+ VK E + E + DSP S + VQ P ++ G
Sbjct: 347 PPSFTRGREGRKSRVKRLPETAAELE-DDDSPTESEAESVQPPRIDADGFAIPSLPIDPA 405
Query: 355 -------------------VPKNCTTQTASNEGEGDHTKTPGVDATTEASD--------- 386
V ++ + ++G+G TP A AS+
Sbjct: 406 LTATSHGRRASVIAKAVNEVVEDIKNEPVHSKGKGKREPTPEPSAEQVASEAALEDEMRS 465
Query: 387 ----GSDNFSDI----------------------DDFEVDGYLHNEEEKHYKKIIWEEMN 420
GS+ + DD EV L E K+ IW N
Sbjct: 466 MLAQGSNMIESVGSEQPPRPTVSDSAEIDAAEFEDDPEVANCLLLPAEVEIKESIWVTEN 525
Query: 421 REYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE 480
+EYL Q AK A K ALE S + ++ V E + R++
Sbjct: 526 KEYLRAQQAK-----ALKRALEESTGGG--TPRKPRKRRRGRLGDVTYLEGEGEDGRSSR 578
Query: 481 AKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
A T EATRRML ++ S KINY +L+ L+
Sbjct: 579 ------ASTPAEATRRMLERRGYSKKINYSLLDTLY 608
>gi|330796592|ref|XP_003286350.1| hypothetical protein DICPUDRAFT_6794 [Dictyostelium purpureum]
gi|325083701|gb|EGC37147.1| hypothetical protein DICPUDRAFT_6794, partial [Dictyostelium
purpureum]
Length = 426
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 143/258 (55%), Gaps = 27/258 (10%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV---RTIQSEYGA-----SRER 69
D + C CG + + N +E +F N S + G FV R S Y + SR
Sbjct: 14 DGSVVCTDCGTIKDSANIVSEISFGDN----SSIVGTFVSATRRTGSSYRSLGGRDSRAM 69
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+E A + ++ +L I + A+R + +A+ NFTKGR+T+ V ASCLY+ CR+
Sbjct: 70 SLENARRRLDEIATSLKIRTHH--IDSAQRSFELAMENNFTKGRKTKLVAASCLYVVCRR 127
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P LLIDFS L +NV+ L +LQL ++L I L VDPS+F+++F+ L G
Sbjct: 128 EKTPHLLIDFSEVLQVNVFTLAHTFLQLIKLLNIQ-----LPIVDPSLFIYRFSSSLEFG 182
Query: 190 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE------ 242
K+V TA ++A MKRDW+ TGRKPSG+CGAALY+++ HG K S +I+
Sbjct: 183 SQTKEVTATANKLVARMKRDWMCTGRKPSGICGAALYIASKIHGFKRSMKEIVHIVKIGE 242
Query: 243 -DFMARKKELHEGVAANL 259
+AR +E +A+L
Sbjct: 243 STLLARLEEFRRTPSASL 260
>gi|71027505|ref|XP_763396.1| transcription factor IIIb subunit [Theileria parva strain Muguga]
gi|68350349|gb|EAN31113.1| transcription factor IIIb subunit, putative [Theileria parva]
Length = 526
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 14/224 (6%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEYGASRERLME 72
+L C CG VL+++ + + N++G +Q+ G FV +T+ SRE+++
Sbjct: 22 ELICQDCGAVLQENTILEQVEYADNSSGNTQVLGRFVSNLSSGRQTLSYNNWHSREQVIN 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ ++++++ AL + S + AKR Y +AV RNFT GR V + CLY CR++
Sbjct: 82 RGNENIKRIAEALKL--SPHHIDAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRREKT 139
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
P LLIDFS+ L V +G ++++L ++L+I+ + VDPSIF +F +L
Sbjct: 140 PHLLIDFSDVLLTPVKTIGQIFMKLVRMLHIS-----VPNVDPSIFFERFATQLKLKDIH 194
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
K+ +T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+ S
Sbjct: 195 KIINTGNRIIQAMNRDWLCTGRRPTGLCGAALLVAARFHGIPLS 238
>gi|85000687|ref|XP_955062.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303208|emb|CAI75586.1| unnamed protein product [Theileria annulata]
Length = 531
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 14/224 (6%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------SRERLME 72
+L C CG VL+++ + + N +G +Q+ G FV + S A SRE+++
Sbjct: 22 ELVCQDCGAVLQENTILEQVEYSDNNSGNTQVLGRFVSNLSSGRQALTHTTWHSREQVIN 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ ++++++ AL + S + AKR Y +AV RNFT GR V + CLY CR++
Sbjct: 82 RGNENIKKIAEALRL--SPHHIDAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRRERT 139
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
P LLIDFS+ L V +G ++++L ++L+I+ + +DPSIF +F +L
Sbjct: 140 PHLLIDFSDVLLTPVKTIGQIFMKLVRMLHIS-----VPNIDPSIFFERFATQLQLKDIH 194
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
K+ +T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+ S
Sbjct: 195 KIINTGNRIIQAMNRDWLCTGRRPTGLCGAALLVAARFHGISLS 238
>gi|50553846|ref|XP_504334.1| YALI0E24035p [Yarrowia lipolytica]
gi|49650203|emb|CAG79933.1| YALI0E24035p [Yarrowia lipolytica CLIB122]
Length = 512
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 144/543 (26%), Positives = 250/543 (46%), Gaps = 106/543 (19%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE------YGASRERLMEKAFD 76
C CG V++D +E TF ++++G + + G+FV QS +G SRE ++K +
Sbjct: 20 CANCGVVVDDAPIVSEVTFGESSSGAAVVHGSFVGADQSGIRNNNFHGESRELTLQKGKN 79
Query: 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
+ + +A++I + I+ A R++ +AV +NF KGRR++ V ++CLY+ACR++ + +L
Sbjct: 80 RITALAHAMDIPQ--HIIEKAHRYFVLAVTKNFVKGRRSQYVVSACLYVACRRELRHEML 137
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
IDF++ L NV+ +G YLQL + L I + L +DPSI++ +F +L K V +
Sbjct: 138 IDFADKLFCNVFAIGTTYLQLLKTLDIKN----LPLIDPSIYIQRFASKLDFDNAKNVRN 193
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
A ++ M RD++ GR+P+G+ AAL ++A + + SK+ I F A+ E
Sbjct: 194 DAVRLVQRMGRDYLVEGRRPAGIAAAALLLAARMNNQRRSKTQIA--FYAKVAE------ 245
Query: 257 ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF-MTISEGLEGGADPPAFQVAE 315
E L + D + G R F MT +E +DPP++Q
Sbjct: 246 --------------ETLQRRLDEFRHTEAG--RQTISVFRMT---NIESQSDPPSYQKHR 286
Query: 316 RERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESI------GVPKNCTTQTASNEG- 368
+ + + E + V+K ++PE + P+ +T N
Sbjct: 287 KREQEGIEEKVQDEIDAEMEEMMAQMVEKNENPEERAKEALFLEDTPQEKAERTVQNRAQ 346
Query: 369 ---------------EGDHTKTPGV------------DATTEASDGSD-------NFSDI 394
E ++ T + D T +G D + SD+
Sbjct: 347 YIIEYERERRRMLNEEANNAATEALLAMKTPHEQMMEDQQTAEKEGGDARPPVVESLSDL 406
Query: 395 -DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ 453
DD E+D L N+EE++ K+ +W +N EYL+EQ K A K
Sbjct: 407 DDDPEIDSILLNDEERNIKEAVWTTVNMEYLQEQETKLLKIEADK--------------- 451
Query: 454 AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE 513
AA V K K++++++ + + P + A E+T++M+ ++ S KINY+
Sbjct: 452 ---------AAGVYKEPKKRKRQKQKDGEKPAPPKDAAESTKQMVQQRAPSKKINYEKFS 502
Query: 514 KLF 516
L+
Sbjct: 503 GLW 505
>gi|66813424|ref|XP_640891.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
gi|60468904|gb|EAL66904.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
Length = 706
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 129/229 (56%), Gaps = 19/229 (8%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--SEYGA-----SRERLMEK 73
+ C CG V E N +E F G S + G FV + S Y + SR +E
Sbjct: 21 VVCTACGTVKESANIVSEVQF----GGDSSIVGTFVSATRKPSSYRSLGGRDSRAMSVEN 76
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
A + Q+ N+L I ++ A+R + +A+ NFTKGR+T V A+CLY+ CR++ P
Sbjct: 77 ARKKLDQIGNSLRI--RSHLIDSAQRTFELAMENNFTKGRQTRLVAAACLYIVCRRERTP 134
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NK 192
LLIDFS L +NV+ + +LQL ++L I L VDPS F+ +F L G K
Sbjct: 135 HLLIDFSENLQVNVFIVAGTFLQLIKLLNIQ-----LPIVDPSFFIQRFASALEFGDQTK 189
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
V TA ++A MKRDW++ GRKPSG+CGA+LY+++ HG K S +I+
Sbjct: 190 DVIATANKLVARMKRDWMSIGRKPSGICGASLYIASKIHGFKRSMKEIV 238
>gi|345498426|ref|XP_001607399.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Nasonia
vitripennis]
Length = 668
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 158/555 (28%), Positives = 253/555 (45%), Gaps = 76/555 (13%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED+ +E TF + +G + G+FV S
Sbjct: 6 CKNCGSTNIETDPARGDAVCTECGFVLEDNIIVSETTFEETPSGNMMMIGSFVSNESSGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SRE ++ A + + L + + + + FY +A+ R+ T+
Sbjct: 66 ATGFGAGYLVSGKESREITLQNAKKGITHLCRQLQLNQ--HCIDTSVNFYKMALNRHLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+DP +++ +F ++L G +V TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SMDPCLYIMRFANKLEFGDKTHEVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 290
H S SDII + ++HE S + + L + +T P +
Sbjct: 239 HEFNRSPSDII-----KIVKVHE-------------STLRKRLIEFGET--PSSA----L 274
Query: 291 CYEEFMTISEGLEGGADPPAFQVA---ERERMVKAS--AEENSSFERESDSPF------- 338
+EFMT+ LE DPPAF+ A +RER+ K A E S E D
Sbjct: 275 TLDEFMTVD--LEEEQDPPAFKAARKKDRERLQKLDNIANEFSELRSEIDRQLEEQKSAK 332
Query: 339 --MSRVDKVQSPEPESIGVPKNCTTQTASNEGE-----GDHTKTPGVDATTEASD---GS 388
+ V+ + + N T +G+ D + P VD + +D S
Sbjct: 333 GRLKNSAAVEESDANRFIIEANKTVIEKCVDGKDPDDPDDPDELPAVDNSVRRNDSSLAS 392
Query: 389 DNFSDIDDFEVDGYLHNEEE--KHYKKIIWEEMNREY----LEEQAAKEAAAAAAKAALE 442
DI + H +E+ K + +E + E L+++ + +A +
Sbjct: 393 GLGPDIASMGLTTSFHGKEDASKESSALSFENLEGEIDITDLDDEELDSYIMSEKEAQFK 452
Query: 443 ASYKN--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 500
+S N + LQ +E +A+ + EK+++R A+ KN PA +A EA +ML +
Sbjct: 453 SSLWNKVNEKYLQDQKEKEEKRQKELAEGKPEKKKRRTAKKKNQNPANSAGEAIEKMLQE 512
Query: 501 KRLSSKINYDVLEKL 515
KR+S+KINY+VL+ L
Sbjct: 513 KRISTKINYEVLKSL 527
>gi|401396470|ref|XP_003879829.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
gi|325114237|emb|CBZ49794.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
Length = 656
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 135/248 (54%), Gaps = 17/248 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C SC ++ C RCG VLED F ++++G + G FV
Sbjct: 29 CRSCGSAELEANESRGEIICCRCGTVLEDLTLVDSLQFAESSSGGVSMVGQFVSSCSGAA 88
Query: 57 RTIQSEYGA---SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
R +++ G SRE+ +++ F++++ + L + S + + A R Y +A RNFT GR
Sbjct: 89 RGLRAGVGGGTDSREQTLQRGFNNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGR 147
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
R+ V ++CLY CR++ P LLIDF + L NV LG V+++L +VL++ + V
Sbjct: 148 RSVLVASACLYAICRRERTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHV 202
Query: 174 DPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
DPS+FL +F ++ G V T ++ +M RDWI+TGR+P GLCGAAL ++A H
Sbjct: 203 DPSLFLERFACQMQLGDKTHTVAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHN 262
Query: 233 LKFSKSDI 240
+ + DI
Sbjct: 263 FQMNAEDI 270
>gi|391339520|ref|XP_003744096.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Metaseiulus occidentalis]
Length = 689
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 127/230 (55%), Gaps = 17/230 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------RTIQSEYG---ASRERLME 72
C CG VLED +E F + A G S+ G V R YG A+RE +
Sbjct: 25 VCTGCGVVLEDTLIVSEVQFEETAGGGSRAIGQMVTGSGGARIQGFRYGGSKAARELTIA 84
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ M+ + + L + +D+IV A R Y +A+ RNFT GRR V A+C+Y+ CR K
Sbjct: 85 RVRTTMKLIADQLQL--NDDIVESAMRLYEMALIRNFTVGRRRSHVLAACIYITCRLKES 142
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
+L+D S+ + +NVYELG Y +L Q L+I + +DP I++ ++ +L L G
Sbjct: 143 SLMLLDISDVVQVNVYELGRTYTKLAQELFI-----TIPVLDPCIYVTRYAQKLELEGDT 197
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV TA +L MKRDW+ GR+PSGLCGAAL V+A +G S D++
Sbjct: 198 HKVSLTALRLLQRMKRDWMAIGRRPSGLCGAALLVAARMNGYNRSVQDLV 247
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 383 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 442
E DG+ + IDD E+D Y+ +EE K +W N +L+
Sbjct: 435 EDGDGALDLDGIDDEEIDNYILTKEESALKAKMWVTENIGFLK----------------- 477
Query: 443 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 502
L+ +++ + AA K K+K ++ + N G T E +++L +K+
Sbjct: 478 ---------LEREKQIQKSRDAAAGKETKKKLKRSRKKLTNQG---TPGENFQKILQEKK 525
Query: 503 LSSKINYDVLEKL 515
+S KINYDVL+ +
Sbjct: 526 ISKKINYDVLKSI 538
>gi|156083907|ref|XP_001609437.1| transcription factor TFIIB subunit [Babesia bovis T2Bo]
gi|154796688|gb|EDO05869.1| transcription factor TFIIB subunit, putative [Babesia bovis]
Length = 519
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 15/225 (6%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR-------ERLME 72
+L C CG VL+++N + +N AG S L G FV T G+ + ++L++
Sbjct: 25 ELVCRNCGAVLQENNVLEAVQYAENPAGNSTLIGRFVPTGGGGMGSLKYSSSQTLDQLVK 84
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ ++++ LNI S E+V A R Y +AV RNFT GR + V CLY ACR+
Sbjct: 85 RGEQNIQRTACHLNI--SSELVTKATRIYSLAVQRNFTMGRNNKHVACCCLYTACRRFKA 142
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
P+LLIDF++ L + V +G V+++L ++L++ + VDPSIF +F + L L
Sbjct: 143 PYLLIDFADVLQVPVKIIGQVFMKLVRMLHLE-----VPNVDPSIFFERFANELQLKDKV 197
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
++ T ++ +M+RDW+ TGR+P+GLCGAAL V+A HG+ +
Sbjct: 198 DQIITTGVRLIQAMRRDWLCTGRRPTGLCGAALVVAARIHGVPLN 242
>gi|387597044|gb|EIJ94664.1| transcription initiation factor IIB [Nematocida parisii ERTm1]
Length = 448
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 140/248 (56%), Gaps = 19/248 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMR--- 79
C CG V+E+ ++ F ++ G S L G +V T ++ S + + +R
Sbjct: 22 CTSCGLVIEESTIVSDVQFAQDTKGSSILQGQYVSTGDTKKLVSGKFITTNHITTIRGIA 81
Query: 80 -QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 138
+ AL IGES ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGESQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 139 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 198
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F + L N+ V TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSK-LNLNNQNVGKTA 193
Query: 199 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKEL 251
++A M RDWI GRKP+G+CGAA+ +S+ HG + + ++ R EL
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILISSRIHGTERTVEEVANVVKVCEATINKRLMEL 253
Query: 252 HEGVAANL 259
E ANL
Sbjct: 254 KETATANL 261
>gi|156100339|ref|XP_001615897.1| transcription factor IIIb subunit [Plasmodium vivax Sal-1]
gi|148804771|gb|EDL46170.1| transcription factor IIIb subunit, putative [Plasmodium vivax]
Length = 826
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 140/252 (55%), Gaps = 16/252 (6%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----- 56
V C +C ++ C RCG VLE++ FV+N G + G FV
Sbjct: 6 VVCKNCHSTDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFVPASGN 65
Query: 57 RTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
++ +G SRE ++K + +++++ + L++ S + V A+R Y +A+ RNFT GR
Sbjct: 66 KSFILSWGVRESRELSLQKGYINIQKIADHLHL--STQHVEAAQRIYLMALQRNFTMGRN 123
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I+ + +D
Sbjct: 124 NSYVAASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNID 178
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS++L +F +L L KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+
Sbjct: 179 PSLYLERFAHKLNLKNAIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGI 238
Query: 234 KFSKSDIIEDFM 245
F S+ I + +
Sbjct: 239 -FIHSNTIANIV 249
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 29/146 (19%)
Query: 377 GVDATTEAS--DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
GVD ++AS +++ SD D E++ + +E+E+ K +IW++M + Y + +
Sbjct: 702 GVDIPSDASLEQLNESLSDFYDSEIENIILSEKERKRKMLIWDDMMKSYFPQYYKQLKKQ 761
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA--QTALE 492
+++ P+ + A EK +K+ + + P QT +
Sbjct: 762 KKKRSSYH------PDRVGA-----------------EKSRKKKKKENDDHPLDEQTTGD 798
Query: 493 ATRRMLTK--KRLSSKINYDVLEKLF 516
+ L K K +S+K+NYDVL+ LF
Sbjct: 799 SVIMALEKSDKSMSTKMNYDVLKSLF 824
>gi|387593387|gb|EIJ88411.1| transcription initiation factor IIB [Nematocida parisii ERTm3]
Length = 466
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 140/248 (56%), Gaps = 19/248 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMR--- 79
C CG V+E+ ++ F ++ G S L G +V T ++ S + + +R
Sbjct: 22 CTSCGLVIEESTIVSDVQFAQDTKGSSILQGQYVSTGDTKKLVSGKFITTNHITTIRGIA 81
Query: 80 -QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 138
+ AL IGES ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGESQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 139 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 198
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F + L N+ V TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSK-LNLNNQNVGKTA 193
Query: 199 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKEL 251
++A M RDWI GRKP+G+CGAA+ +S+ HG + + ++ R EL
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILISSRIHGTERTVEEVANVVKVCEATINKRLMEL 253
Query: 252 HEGVAANL 259
E ANL
Sbjct: 254 KETATANL 261
>gi|347971505|ref|XP_313145.5| AGAP004233-PA [Anopheles gambiae str. PEST]
gi|333468699|gb|EAA08645.5| AGAP004233-PA [Anopheles gambiae str. PEST]
Length = 688
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 159/567 (28%), Positives = 250/567 (44%), Gaps = 133/567 (23%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTIQSEYGA--------SRERL 70
C CG VLED+ +E F +NA G + G FV R ++YG SRE
Sbjct: 26 CTNCGSVLEDNIIVSEVQFEENAHGAASAVGQFVASDSRGGATQYGKFQVSTGTESREVT 85
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ KA + + + L + ++ + A F+ +A+ RN T+GRR + A+C+Y+ CR +
Sbjct: 86 LRKARQGITHLCSQLRL--NNHCIETACNFFKMALIRNLTRGRRNTHIYAACVYITCRTE 143
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
LLID S+ L I YELG YL+L Q L + + +DP I++ ++ ++L
Sbjct: 144 GTSHLLIDISDVLQICCYELGRTYLKLSQSLCLN-----IPSIDPCIYIMRYANKLEFKE 198
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKK 249
+V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DI+ R
Sbjct: 199 KTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHDFSRTPNDIV-----RIV 253
Query: 250 ELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPP 309
++HE S + + L + +T P + +EFM + LE DPP
Sbjct: 254 KIHE-------------STLRKRLFEFGET--PSSA----LTVDEFMAVD--LEAEQDPP 292
Query: 310 AFQVA---ERERMVKASA-------------------------------------EENSS 329
AF+ A ++ER+ K +E
Sbjct: 293 AFKAARKRDKERLQKLEEQTTEFNQLQAEIDAALDREMTRLGKKRKVKNVDFDELQETGQ 352
Query: 330 FERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASD--- 386
F ES ++ K ++P G KN + S EG + A TE
Sbjct: 353 FIEESTMDVITECLKEETPGSGGGGREKNSANSSKSFIPEGMRPDLRAICANTEKERPAG 412
Query: 387 ---GSDNF-------------SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 430
GS +F D+DD E++GY+ EEE K + WE++N EYL++ K
Sbjct: 413 EELGSGSFLPEGDVGEGELLTEDLDDDEINGYIMTEEEARTKNMQWEKLNEEYLKDMKIK 472
Query: 431 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 490
E A + + + EK+++R + K GP+ +A
Sbjct: 473 EERLAKER----------------------------EEGKPEKKKRRNVKKKMFGPSPSA 504
Query: 491 LEATRRMLTKKRLSSKINYDVLEKLFD 517
EA +L +K++SSKINYD+L+ L D
Sbjct: 505 REAIEMILQEKKISSKINYDILKTLTD 531
>gi|82793708|ref|XP_728148.1| transcription factor IIIb 70 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23484353|gb|EAA19713.1| transcription factor iiib 70 kDa subunit [Plasmodium yoelii yoelii]
Length = 756
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 139/247 (56%), Gaps = 15/247 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C +C ++ C RCG VLE++ FV+N G + G F+ ++
Sbjct: 4 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 63
Query: 59 IQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+G SRE ++K + +++++ + L++ S++ + A+R Y +A+ RNFT GR
Sbjct: 64 FMLSWGIRESREISLQKGYINIQKIADNLHL--SNQHIEAAQRIYLMALQRNFTMGRNNS 121
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I+ + +DPS
Sbjct: 122 YVAASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNIDPS 176
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+FL +F +L L KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+
Sbjct: 177 LFLERFAYKLNLKNDIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGINV 236
Query: 236 SKSDIIE 242
+ + I E
Sbjct: 237 NSNTIAE 243
>gi|325192948|emb|CCA27332.1| transcription factor IIIB putative [Albugo laibachii Nc14]
Length = 531
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 136/253 (53%), Gaps = 22/253 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C SC H + C CG ++E +N + F + + G S + G FV +
Sbjct: 7 CPSCKCTQIEHVDISGEAVCVNCGTIVEINNIVSSVEFHETSGGNS-VVGQFVSSQGFNA 65
Query: 59 ---IQSEYGAS-----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
+ + G S RE+ + + ++ L++G V A R Y +A+ RNFT
Sbjct: 66 YSKVSATNGRSYDSNSREKTLANCRRTITRVAGMLSLG--SHYVDSAFRLYALALQRNFT 123
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR++E V A+CLY+ CR++ P LLIDFS+ L NVY LG V+L+ C +L I L
Sbjct: 124 RGRKSEVVIAACLYIVCRRERSPHLLIDFSDALQWNVYVLGGVFLKFCNLLQIH-----L 178
Query: 171 KQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS+++H+F +L L + ++ASMKRDWI TGR+PSG+CGAAL ++A
Sbjct: 179 PLVDPSLYIHRFASQLRLKSKTHTIATIGLRLVASMKRDWIQTGRRPSGICGAALLIAAR 238
Query: 230 THGLKFSKSDIIE 242
+ S D+++
Sbjct: 239 CQSVPCSFQDVMD 251
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 37/131 (28%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D+ SD+DD E+ G + EE K ++WE+MN E+ ++Q K +
Sbjct: 433 DSLSDLDDEEICGLILTPEEVDQKALLWEQMNGEFFKKQEEKRLIKGSTPPP-------- 484
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
+K++KR EA + P TA A ++ ++ IN
Sbjct: 485 -----------------------KKKRKRVMEA-DIPPPDTAQHAIYKLKSR-----NIN 515
Query: 509 YDVLEKLFDDS 519
YDV+ +LF DS
Sbjct: 516 YDVINELFGDS 526
>gi|302682668|ref|XP_003031015.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
gi|300104707|gb|EFI96112.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
Length = 543
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/456 (28%), Positives = 212/456 (46%), Gaps = 62/456 (13%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-- 58
M C+ C C +CG V+E+ E F + + G + + G+FV
Sbjct: 1 MAICTECGGTTIDSDAAAGNSFCTQCGTVVEESQIVNEVVFGETSTGAAMVQGSFVAQGA 60
Query: 59 ----IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
+ YG SRE+ + A ++ Q+ AL++ E + A R Y +AV F
Sbjct: 61 TRARLGGPYGNRGNVESREQTLANAERNIAQIAIALHLSEV--VRFAALRLYTLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG +YLQL Q L +
Sbjct: 119 TKGRKSMNVAAVCLYVACRQKETRQYMLIDFSDILEVNVFELGHIYLQLVQTLCLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L VDPS ++ +F L G ++V + A ++ RDW+T GR+P+G+CGAAL ++
Sbjct: 175 -LPLVDPSHYISRFAALLEFGDETQRVANDAVRLVQRFDRDWMTRGRRPAGICGAALLLA 233
Query: 228 ALTHGLKFSKSDIIEDF----MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPF 283
A + + S +I++ + KK L E N P+ ++ V
Sbjct: 234 ARMNNFRRSVEEIVQVVKIADVTLKKRLEE--FKNTPSGALTLADFRNVW---------- 281
Query: 284 ACGLCRSCYEEFMTISEGLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFM 339
L+ DPPA+ Q E R+ AEE++ E D P
Sbjct: 282 ------------------LDEEVDPPAYTKGRQKEEAARLAAQMAEEDAEGE---DVPVT 320
Query: 340 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEAS-DGSDNFSDIDDFE 398
+ E + + + ++ S++GE + + A+ D D+D+ E
Sbjct: 321 ASTSTNPVEEAATTAIAEEVSSFLHSDKGERLNEALEANEEERRANMTVCDELLDLDEEE 380
Query: 399 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
+D ++ EEE K+ +W E+NR+YLE A +AA
Sbjct: 381 LDRFILGEEEVKIKERVWVELNRDYLEALAGVWSAA 416
>gi|390358626|ref|XP_794011.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Strongylocentrotus purpuratus]
Length = 766
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 135/252 (53%), Gaps = 20/252 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
CS+C C CG V+ED+ +E F +N G + + G FV +
Sbjct: 7 CSNCGGSDIDTDQARGNAVCVSCGAVIEDNFIVSEVGFAENTLGGTSVIGQFVSSEGDKS 66
Query: 59 ------IQSEYGA-SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+ YG SR +++ ++ + L + + +A F+ +AV + T+
Sbjct: 67 HTLGNNFRHGYGKESRTVTLQQGKRHIQNLGGQLKLNQHRN--DMAYNFFKMAVQKKLTR 124
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+T + A+CLYL CR +S P +L+D S+ L +NVY LG YL+LCQ L+I NV
Sbjct: 125 GRKTMHIVAACLYLVCRLESTPHMLLDLSDLLQVNVYVLGKTYLKLCQELHI----NV-P 179
Query: 172 QVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+DP +F+ +F +L VC+TA +++ MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 180 AIDPCLFIQRFAHKLEFDERTDVVCETALRLVSRMKRDWMHTGRRPSGLCGAALLVAARM 239
Query: 231 HGLKFSKSDIIE 242
H ++ D+I+
Sbjct: 240 HNFSRTQKDVIK 251
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 37/180 (20%)
Query: 336 SPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 395
S S DK P P S+G ++ E K+P D DG + + ID
Sbjct: 471 SAVWSDEDKGLGPSPLSLGF------ESIIKEAAIPEEKSPDSD------DGELDLTGID 518
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
+ E++ ++ +E+E K +W + N EY++ KE + L GL+
Sbjct: 519 EKEMELFILSEKEVMIKTTLWMKENGEYMKLMEEKELRLRKERELL---------GLKPD 569
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
Q + A TA EA ++L +K++SSKINYDVL L
Sbjct: 570 QPKKKRKNNKKPPIQ----------------ANTAGEAIEKLLVEKKISSKINYDVLRDL 613
>gi|70953761|ref|XP_745961.1| transcription factor IIIb subunit [Plasmodium chabaudi chabaudi]
gi|56526443|emb|CAH75344.1| transcription factor IIIb subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 717
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 137/247 (55%), Gaps = 15/247 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C +C ++ C RCG VLE++ FV+N G + G F+ ++
Sbjct: 3 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 62
Query: 59 IQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+G SRE ++K + +++++ A N+ S + + A+R Y +A+ RNFT GR
Sbjct: 63 FILSWGIRESREISLQKGYINIQKI--ADNLHLSSQHIEAAQRIYLMALQRNFTMGRNNS 120
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I+ + +DPS
Sbjct: 121 YVAASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNIDPS 175
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+FL +F +L L KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+
Sbjct: 176 LFLERFAYKLNLKNDIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGITI 235
Query: 236 SKSDIIE 242
+ + I E
Sbjct: 236 NSNTIAE 242
>gi|124809652|ref|XP_001348643.1| transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
gi|23497541|gb|AAN37082.1|AE014824_1 transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
Length = 748
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 134/240 (55%), Gaps = 15/240 (6%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----- 56
V C +C ++ C RCG VLE++ FV+N G + G F+
Sbjct: 16 VVCKNCLSSDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGN 75
Query: 57 RTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
++ +G SRE ++K + +++++ + L++ S + + A+R Y +A+ RNFT GR
Sbjct: 76 KSFILSWGIRESREISLQKGYVNIQKIADHLHL--SSQHIEAAQRIYLMALQRNFTMGRN 133
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I + +D
Sbjct: 134 NSYVAASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIN-----VPNID 188
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS+FL +F +L L KV T ++ +M RDWI+TGR+P+GLCGAAL +S HG+
Sbjct: 189 PSLFLERFAHKLNLKNDIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGAALLISTRMHGI 248
>gi|429240773|ref|NP_596265.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe 972h-]
gi|395398538|sp|Q9P6R0.2|TF3B_SCHPO RecName: Full=Transcription factor IIIB 60 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1; AltName: Full=TFIIB-related factor
gi|347834355|emb|CAB89885.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe]
Length = 492
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 137/523 (26%), Positives = 240/523 (45%), Gaps = 82/523 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY---GASRERLME 72
C +CG V+E +E TF + + G + + G+ V RT Y G+ R +
Sbjct: 22 CTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQTHARTFGGPYRNQGSVESRELT 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
A R A+ + ++ + A R++ +A+ NF KGRR++ V ASCLY+ CR
Sbjct: 82 IANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKT 141
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
+LIDFS+ L INV++LG+ +L+LC+VL L +DPS+++ +F L G
Sbjct: 142 SHMLIDFSDILQINVFKLGSTFLKLCRVLRPN-----LPLLDPSLYISRFASLLEFGPET 196
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKEL 251
+V + A ++A M RDW+ GR+P+G+CGA L ++A + F +S + + ++
Sbjct: 197 HRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAARMNN--FRRSVREVVHVVKVADI 254
Query: 252 HEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAF 311
+ K D K G +F I LEG +DPP+F
Sbjct: 255 --------------------TIQKRLDEFKLTESGDL--SIADFRNI--WLEGQSDPPSF 290
Query: 312 QVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQSPE-PESIGV 355
++ + A N +E SP +S+ KV+S E P +
Sbjct: 291 TKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQETPVHLKA 350
Query: 356 PKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKII 415
+ + + +GD + + + S+ D+DD E++ L +++E K +
Sbjct: 351 DEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQV 410
Query: 416 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 475
W E+N++YL E+ AK L+ ++L + + +++++
Sbjct: 411 WMELNKDYLAEEEAK--------------------NLKLQEDL----KKGIVRQPRKRRR 446
Query: 476 KRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
R ++ + G A TA E+ + M+ ++ S KINY+ L+ LFD+
Sbjct: 447 YRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489
>gi|221059469|ref|XP_002260380.1| transcription factor IIIb subunit [Plasmodium knowlesi strain H]
gi|193810453|emb|CAQ41647.1| transcription factor IIIb subunit, putative [Plasmodium knowlesi
strain H]
Length = 850
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 138/252 (54%), Gaps = 16/252 (6%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----- 56
+ C +C ++ C RCG VLE+ FV+N G + G FV
Sbjct: 6 IICKNCHSTDVETNEGQGEVICLRCGSVLEESKIVESLEFVENNNGAISMVGQFVPASGN 65
Query: 57 RTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
++ +G SRE ++K + +++++ L++ S + V A+R Y +A+ RNFT GR
Sbjct: 66 KSFILSWGVRESRELSLQKGYINIQKIAEHLHL--STQHVESAQRIYLMALQRNFTMGRN 123
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I+ + +D
Sbjct: 124 NSYVAASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNID 178
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS++L +F +L L KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+
Sbjct: 179 PSLYLERFAHKLNLKNDIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGI 238
Query: 234 KFSKSDIIEDFM 245
F S+ I + +
Sbjct: 239 -FVHSNTIANIV 249
>gi|160333889|ref|NP_001037055.1| TFIIB-related factor [Bombyx mori]
gi|22417141|gb|AAM96688.1| TFIIB-related Factor [Bombyx mori]
Length = 661
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 162/598 (27%), Positives = 254/598 (42%), Gaps = 147/598 (24%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C C P C CG VLED+ +E F +NA G + G FV
Sbjct: 6 CKHCGSSEIEVDPARGDAVCTSCGTVLEDNIIVSEVEFQENAHGGASAIGQFVSADTKGG 65
Query: 57 -----RTIQSEYGA-SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
R + G S+E + KA + + L + + + + +A FY +A++R+ T
Sbjct: 66 ATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQ--QCIDIACNFYKMALSRHLT 123
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
GR QA+C+Y+ CR + P LLID S+ + + Y+LG Y +L + L I +
Sbjct: 124 IGRPVTHTQAACVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCIN-----I 178
Query: 171 KQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
DP +++ +F +L +V TA ++ MK+D I +GR+PSG+CGAAL ++A
Sbjct: 179 PPTDPCLYILRFASQLKFEDKQHEVSMTALRLVQRMKKDSIHSGRRPSGICGAALLIAAR 238
Query: 230 THGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 289
H + SDI+ R ++HE S + + + + DT P +
Sbjct: 239 LHEFSRTPSDIV-----RIVKVHE-------------STLRKRMFEFGDT--PSSA---- 274
Query: 290 SCYEEFMTISEGLEGGADPPAFQVA---ERERMVKASAEEN-----SSFERESDSPF--- 338
EEFMT+ LE DPPAF+ A ++ER+ K EE+ + ++E ++
Sbjct: 275 LTLEEFMTVD--LEEEQDPPAFRAARKRDKERLQKLMEEEDGEKELTELQKEIEAQIEKD 332
Query: 339 MSRVDKV------QSPEP---ESIGVPKNCTTQTAS-----------------NEG---E 369
MSR KV SP P E+IG T+ A+ NEG E
Sbjct: 333 MSRRRKVCSASYTSSPGPVSQENIGSEDEDATRFAAEETLEIIDEITKDIRPKNEGPKEE 392
Query: 370 GDHTKTP-----GVDATTEASDGSDN--------------------------FSDIDDFE 398
H K G D SD+ S D+
Sbjct: 393 NKHEKMKLEKGLGPDLAVIGLGPSDDKNADKFVKPEPKQTFCKDLQNADELVMSQRDEEY 452
Query: 399 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 458
+D + + +E +K +W ++N YL+EQ K QE+
Sbjct: 453 IDSLIMSADEAKHKTKLWNKVNAGYLKEQKIK-------------------------QEI 487
Query: 459 AAAAAAAVAKSRKEKQQKRAAEAKNSG-PAQTALEATRRMLTKKRLSSKINYDVLEKL 515
A + +++ +K++ R + K A TA EA +ML +K++SSKINYD+L+ L
Sbjct: 488 ---KAKELEENKDKKKKVRGSYRKKVAINAATAGEAIEKMLAEKKMSSKINYDILKSL 542
>gi|378754531|gb|EHY64562.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 513
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 15/249 (6%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG V+E+ ++ F ++ G S L G +V T ++ S + + +R +
Sbjct: 22 CTSCGLVIEESTIVSDVQFAQDTKGSSILQGQYVSTGDTKKLVSGKFITTNHTTTIRSIA 81
Query: 83 NALN--IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
++ +G D ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+DF+
Sbjct: 82 KSIGEALGIGDSQINSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVDFA 141
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
L INV+++G+++L+L ++L I + VDPS+F+ +F + L N+ + TA
Sbjct: 142 YILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSK-LSLNNQSIGKTALR 195
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII-------EDFMARKKELHE 253
++A M RDWI GRKP+G+CGAA+ +++ HG + + D+ R EL E
Sbjct: 196 LIARMDRDWIVIGRKPAGICGAAILIASRIHGNERTVEDVAGAVRVCEATINKRLAELKE 255
Query: 254 GVAANLPNN 262
ANL N
Sbjct: 256 TATANLSIN 264
>gi|392597143|gb|EIW86465.1| BRF1-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 639
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 143/256 (55%), Gaps = 22/256 (8%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-- 58
M C+ C V + C +CG V+E++ E TF + +AG + + G++V
Sbjct: 1 MPTCTDCGGTVIEYNDAAGNGFCVKCGTVVEENTIVNEVTFGETSAGAAMVQGSYVGQGS 60
Query: 59 ----IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
+ +G SRE+ + A ++ +AL + SD + A R Y +AV F
Sbjct: 61 THARMSGPFGNRGSSESREQTIANASRKIQSFASALRL--SDIVALAATRLYTLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG +YLQL Q L +
Sbjct: 119 TKGRKSINVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHIYLQLVQTLNLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F+ LL G++ KV A ++ RDW+T GR+P+G+CGAAL +
Sbjct: 175 -LPVVDPSHYISRFS-ALLEFGDETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLL 232
Query: 227 SALTHGLKFSKSDIIE 242
+A + + S +I++
Sbjct: 233 AARMNNFRRSIEEIVQ 248
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 27/131 (20%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D ++D+ E+DG++ +E+E K+ IW EMNREYLE AAK
Sbjct: 444 DELMNLDEDELDGFILSEDEVRLKERIWVEMNREYLEALAAK------------------ 485
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 507
A++L + R++ K + SG TA E+ + ++ K R S +I
Sbjct: 486 ------AEQLEKGTTTVKTRKRRKTNTKPRDASTPSG--STAAESVQNLIKKNSRYSKRI 537
Query: 508 NYDVLEKLFDD 518
NYD L+ LF D
Sbjct: 538 NYDALKNLFVD 548
>gi|403223081|dbj|BAM41212.1| transcription factor IIIb subunit [Theileria orientalis strain
Shintoku]
Length = 520
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 135/242 (55%), Gaps = 19/242 (7%)
Query: 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE 62
+C S + H +L C CG VL+++ + + G + L G F+ T S
Sbjct: 8 YCGSTQIEIYQHL---GELLCQDCGAVLQENAVLEGIQYSETQTGSTAL-GQFIPTAGSR 63
Query: 63 -----YGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT 115
YG+ SRE+++ + + +++++ + L + E V AKR Y +AV RNFT GR
Sbjct: 64 RLTLAYGSWQSREQVINRGYHNIQRIADYLRLSEQH--VEAAKRIYLLAVQRNFTMGRNN 121
Query: 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDP 175
V + CLY CR++ P LLIDFS+ L V +G ++++L ++L+I+ + VDP
Sbjct: 122 LHVASCCLYTICRREKTPHLLIDFSDILQTPVKTIGQIFMKLVRMLHIS-----VPNVDP 176
Query: 176 SIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
SIF +F +L L +K+ T I+ +M RDWI TGR+P+GLCGAAL V+A HG+
Sbjct: 177 SIFFERFATQLHLKDNIQKIIVTGNRIIQAMNRDWICTGRRPTGLCGAALVVAARFHGIH 236
Query: 235 FS 236
S
Sbjct: 237 LS 238
>gi|409074474|gb|EKM74871.1| hypothetical protein AGABI1DRAFT_47247, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 662
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 140/253 (55%), Gaps = 22/253 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
CS C V + C CG V+E++ E F + A G + + G+FV
Sbjct: 7 CSDCGGTVIEYDQAAGNGFCVTCGTVVEENTIVNEIAFGETANGTAIVQGSFVAQGATHA 66
Query: 59 -IQSEYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ YG SRE+ +E A ++ + + L + E +V A+R Y +AV FTKG
Sbjct: 67 RMGGPYGNRSSSDSREQTIENATKKIQNIASILRLSEV--VVLAARRMYTLAVEHKFTKG 124
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q+L + L
Sbjct: 125 RKSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQILNLR-----LP 179
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 180 LVDPSHYISRFA-ALLEFGDETHKVATDAVRLVQRFDRDWMTKGRRPAGICGAALLLAAR 238
Query: 230 THGLKFSKSDIIE 242
+ + S +I++
Sbjct: 239 MNNFRRSIEEIVQ 251
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 29/143 (20%)
Query: 388 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 447
+D +D+ E++ ++ +++E K+ +W E+NR+YLE AAK
Sbjct: 458 ADELMGLDEEELNRFILSDDEVRIKERVWVELNRDYLEAIAAK----------------- 500
Query: 448 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 506
G Q + A A ++ +++ + R A + TA E+ R ++ K + S +
Sbjct: 501 ---GYQ-----QDSTATAKSRKKRKSNKPRDATTPS---GSTAAESVRNLIKKNPKYSKR 549
Query: 507 INYDVLEKLFDDSVCLYSISICL 529
INYD L+ LF D+ S S L
Sbjct: 550 INYDALKDLFVDTNTPPSFSQSL 572
>gi|345568504|gb|EGX51397.1| hypothetical protein AOL_s00054g96 [Arthrobotrys oligospora ATCC
24927]
Length = 589
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 193/397 (48%), Gaps = 77/397 (19%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---------YGA--S 66
D + C CG V+ + +E TF + ++G + + G++V Q +GA +
Sbjct: 20 DDKRICTSCGTVVTESFIVSEITFGETSSGAAVVQGSYVGADQKHARSSGPFRRHGAAET 79
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE+++ + Q+ +AL++ D V A R++ +AV NF +GR+T+ V A CLY+A
Sbjct: 80 REQVISNGRRKLNQLASALSV--HDRFVETAARYFTLAVTHNFIQGRKTQHVVACCLYIA 137
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR +LIDFS+ L +NV+ LG+ YL+L + L + + Q+DP +++ +F R
Sbjct: 138 CRLDKSAHMLIDFSDILQLNVFSLGSTYLKLVKTLNLN-----IPQLDPELWIRRFA-RH 191
Query: 187 LPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244
L G+K +VC A I+ M RDWI GR+P+G+CGAA+ ++A + + + ++++ +
Sbjct: 192 LEFGDKTQQVCRDAIKIVQRMDRDWIMEGRRPAGVCGAAIIIAARMNNFRRTVTEVV--Y 249
Query: 245 MARKKELHEGVAANLPNNGPKVSGM--NEVLCKHKDTGKPFACGLCRSCYEEFMTISE-- 300
+ KV+GM N+ L + K+T +T+SE
Sbjct: 250 IV------------------KVAGMTINKRLEEFKNTKS------------SELTVSEFR 279
Query: 301 --GLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFMSRVDKVQS-----PE 349
LE DPP+F R R VK+ E+ E E D + + + + P+
Sbjct: 280 NMWLEQYHDPPSFGENKTKKRRRRWVKSVNEDGEVIENEVDESASAPIVDLTAGNFLGPD 339
Query: 350 PESIGVPKNCTTQTASNE------GEGDHTKTPGVDA 380
IG T A+NE G+G K P VDA
Sbjct: 340 GRLIG---PGTAANAANEKAQKAFGDGSARKRPRVDA 373
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 73/174 (41%), Gaps = 24/174 (13%)
Query: 346 QSP-EPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 404
+SP E E + + N TQTA + + + + + S DN D+DD E++ +
Sbjct: 435 KSPLEAEILALINNPETQTAVEDIRRERLRQQALLPPSTVSADPDNLEDVDDDEIESVMM 494
Query: 405 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 464
+ EE K IW E NREYL Q AK A A + A G+ A
Sbjct: 495 SPEEVALKTKIWYEYNREYLLTQEAKRLKAEADEKA----------GIGKKARKKRGKAK 544
Query: 465 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
S + PA A EA R M+ KK S KINY L+ LF+D
Sbjct: 545 PRDSSFPDM------------PASPA-EAAREMMKKKTFSRKINYAALDSLFED 585
>gi|428176989|gb|EKX45871.1| hypothetical protein GUITHDRAFT_71051 [Guillardia theta CCMP2712]
Length = 356
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 126/230 (54%), Gaps = 19/230 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV--RTIQSEYGA---------SRERLM 71
C CG VLE+ +E F +NA GQS + G FV + GA SRE +
Sbjct: 24 CTNCGHVLEECAIVSEVQFSENAGGQSSVVGQFVPEHGLSGFRGAPGYGGFSKESREVTL 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
++ + L + + V VA RF+ AV +NF +GRRT V A+CLY+ CR+
Sbjct: 84 ANGKRIIQHIAGCLRLASNH--VEVAHRFFQQAVQKNFIQGRRTNSVVAACLYIVCRRLK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG 190
+LIDF+ L I+VY+LG V+L+ C+ L+I L +DPS+++ +F L
Sbjct: 142 TSHMLIDFAEVLQIDVYDLGNVFLKFCKELHIK-----LDPIDPSLYIRRFASMLEFEEK 196
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+V TA I+A M R+W+ TGR+P+G+CGA L ++A HG +++ I
Sbjct: 197 THQVAHTALRIVARMNREWMITGRRPAGICGAGLIIAAKMHGFNRTETQI 246
>gi|327259002|ref|XP_003214327.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Anolis
carolinensis]
Length = 672
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 179/372 (48%), Gaps = 53/372 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C C V R C CG VLED+ +E FV+N+ G S G FV
Sbjct: 10 CGGCEIEVDSAR---GDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDAAGK 66
Query: 59 IQSEYG-------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
Q+ G SR + ++ + + N L + + + A F+ +AV+++ T+
Sbjct: 67 TQTVGGFHVNLGKESRAQTLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTR 124
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 125 GRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA---- 180
Query: 172 QVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 181 -IDPCLYIPRFAHMLEFGTKNHEVSMTALRLLQQMKRDWMHTGRRPSGLCGAALLVAARM 239
Query: 231 HGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 290
H + + ++I R ++ E S + + L + +DT P + +
Sbjct: 240 HDFRRTVKEVI-----RVVKVGE-------------STLRKRLTEFEDT--PAS----QL 275
Query: 291 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKV----Q 346
+EFMTI LE DPP+F +R+ ++ +E S E + S D++ +
Sbjct: 276 TIDEFMTID--LEEECDPPSFTAGQRKIKIQQLEKELSKKLEELEGEITSYQDEIEIELE 333
Query: 347 SPEPESIGVPKN 358
+ P++ GV N
Sbjct: 334 NSRPKAKGVYAN 345
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 345 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 404
V+ P ES+ P E + T D DG + + IDD E+D Y+
Sbjct: 398 VRPPALESLLGPLPTAASLGITESIKECILTKDRDLNENTEDGELDLNGIDDTEIDMYIL 457
Query: 405 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 464
NE E K +W + N +YL+EQ KEA A K EL
Sbjct: 458 NESEAQIKAELWMKENADYLKEQKEKEARIAKEK------------------ELGIY--- 496
Query: 465 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KE + K++A+ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 497 ------KEHKPKKSAKKRELIQASTAGEAIEKMLEQKKISSKINYNVLRDL 541
>gi|157128816|ref|XP_001655207.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882162|gb|EAT46387.1| AAEL002427-PA [Aedes aegypti]
Length = 609
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 159/559 (28%), Positives = 260/559 (46%), Gaps = 124/559 (22%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------------SRER 69
C CG VLED+ +E F +NA G S G FV + S+ GA SRE
Sbjct: 25 CTNCGSVLEDNIIVSEVQFEENAHGASSAVGQFVAS-DSKGGATAYGKFHVGTGTESREV 83
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ KA + + + L++ ++ + A F+ +A+ R+ T+GRR + A+C+Y+ CR
Sbjct: 84 TLRKARQGITHLCHQLHL--NNHCIETACNFFKMALIRHLTRGRRNTHIYAACVYITCRT 141
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+ LLID S+ L I YELG YL+L Q L I + +DP I++ ++ ++L
Sbjct: 142 EGTSHLLIDISDVLQICCYELGRTYLKLSQALCIN-----IPSIDPCIYIMRYANKLEFA 196
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARK 248
+V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DI+ R
Sbjct: 197 EKTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHEFSRTPNDIV-----RI 251
Query: 249 KELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
++HE S + + L + +T P + +EFM++ LE DP
Sbjct: 252 VKIHE-------------STLRKRLVEFGET--PSSA----LTLDEFMSVD--LEAEQDP 290
Query: 309 PAFQVA-----ERERMVKASAEENSSFERESDSPF-----MSR------------VDKV- 345
PAF+ A ER + ++ S+ E + + E D+ SR VD+V
Sbjct: 291 PAFKAARKKDKERLQKLEESSTEFNQLQAEIDAALEKDLHKSRGRKRKFKGEDISVDEVG 350
Query: 346 ---QSPEPESIGVPKNCTTQ-----TASNEGEGDHTKTP-GV--DATTEASDGSDNFSDI 394
Q + ++ V C + ++ G P G+ D S+ +D I
Sbjct: 351 ETDQFIQESTLEVITECLEENPDETNVDSKINGRRKIVPEGIKPDLLAMCSNNTDRKEKI 410
Query: 395 DDFE--------------VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 440
+ E ++GY+ EEE YK ++W ++ E+L+E KE A +
Sbjct: 411 ETREDDGELYLDDLDDDEINGYIMTEEEARYKDMMWNRLHAEHLKEMKEKEERLAKERE- 469
Query: 441 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 500
EG + EK+++++A KN GP+ +A EA +ML +
Sbjct: 470 ---------EG------------------KPEKKKRKSARKKNIGPSNSAGEAIEKMLQE 502
Query: 501 KRLSSKINYDVLEKLFDDS 519
K++S+KINYD+L+ L D +
Sbjct: 503 KKISTKINYDILKTLTDSA 521
>gi|358054427|dbj|GAA99353.1| hypothetical protein E5Q_06048 [Mixia osmundae IAM 14324]
Length = 636
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 143/264 (54%), Gaps = 23/264 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQ-----SQLSGNFVR- 57
C C+ + P + L C CG V+E+ +E TF + + G + LSG+ VR
Sbjct: 8 CDVCSSSNVVNDPGNGSLVCIDCGSVIEEDAIVSEVTFAETSTGAAVVTGTYLSGDAVRA 67
Query: 58 --TIQSEYGA----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
T GA SRE+ + MR++ N+L+I E + A R++ +A+ F +
Sbjct: 68 RGTGPYRNGAPGPESREQTLANGRRRMRELANSLSIEE--RVTDAASRWFTLAIHSTFNR 125
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+T+ V A+CLYLACR +LIDFS+ L +NV+ LG YL+L + L +++ +
Sbjct: 126 GRKTDHVVAACLYLACRHNKMTLMLIDFSDLLQVNVFVLGQTYLKLVKNLNMSER---VP 182
Query: 172 QVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDPSI++ +F L G + +V A ++ M RDW+ TGR+P+G+CGAAL ++A
Sbjct: 183 LVDPSIYIQRFAALLEFGKDTTQVSLDASRLIQRMDRDWMLTGRRPAGVCGAALVIAARM 242
Query: 231 HG-----LKFSKSDIIEDFMARKK 249
+ L+ ++ I D RK+
Sbjct: 243 NDYRRTLLEVTQVVKIADITLRKR 266
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 32/137 (23%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D + + SD+D+ E+D Y+ + ++ K +W NR+YLE AAK+
Sbjct: 459 DAAGSLSDLDEDELDEYILSAADREAKTRLWITFNRDYLENAAAKQ-------------- 504
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSR-KEKQQKRAAEAKNSG-PAQTALEATRRML-TKKR 502
+N E K R K + +KR E + G PA TA EA ML +KKR
Sbjct: 505 RNADEE---------------GKPRPKPRARKRKKEEDSPGLPAATAGEAATIMLQSKKR 549
Query: 503 LSSKINYDVLEKLFDDS 519
+S K+NYDV+ +L ++
Sbjct: 550 VSKKLNYDVVSRLLQET 566
>gi|126289989|ref|XP_001364012.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Monodelphis
domestica]
Length = 681
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 161/332 (48%), Gaps = 47/332 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C C P C CG VLED+ +E FV+N+ G S G FV
Sbjct: 6 CRGCGGTDIELDPGRGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGK 65
Query: 59 IQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
I S G SR + ++ + + N L + + + A F+ +AV+++ T
Sbjct: 66 IPSVGGGFHVNLGKESRAQTLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLT 123
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 124 RGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA--- 180
Query: 171 KQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 181 --IDPCLYIPRFAHMLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 238
Query: 230 THGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 289
H + + ++I R ++ E S + + L + +DT P + +
Sbjct: 239 MHDFRRTVKEVI-----RVVKVCE-------------STLRKRLTEFEDT--PTS----Q 274
Query: 290 SCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+EFM I LEG DPP+F +R+ +K
Sbjct: 275 LTIDEFMKID--LEGECDPPSFTAGQRKLKIK 304
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 384 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 443
+ DG + + IDD E+D Y+ NE E K +W + + +Y++EQ KEA A K
Sbjct: 446 SGDGELDLNGIDDSEIDRYILNENEAQIKAELWMKEHADYVKEQKEKEARIAKEK----- 500
Query: 444 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 503
EL KE + K++++ + A TA EA +ML +K++
Sbjct: 501 -------------ELGIY---------KEHKPKKSSKKREPIQASTAGEAIEKMLEQKKI 538
Query: 504 SSKINYDVLEKL 515
SSKINY+VL L
Sbjct: 539 SSKINYNVLRDL 550
>gi|157128814|ref|XP_001655206.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882161|gb|EAT46386.1| AAEL002427-PB [Aedes aegypti]
Length = 644
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 159/557 (28%), Positives = 259/557 (46%), Gaps = 124/557 (22%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------------SRER 69
C CG VLED+ +E F +NA G S G FV + S+ GA SRE
Sbjct: 25 CTNCGSVLEDNIIVSEVQFEENAHGASSAVGQFVAS-DSKGGATAYGKFHVGTGTESREV 83
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ KA + + + L++ ++ + A F+ +A+ R+ T+GRR + A+C+Y+ CR
Sbjct: 84 TLRKARQGITHLCHQLHL--NNHCIETACNFFKMALIRHLTRGRRNTHIYAACVYITCRT 141
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+ LLID S+ L I YELG YL+L Q L I + +DP I++ ++ ++L
Sbjct: 142 EGTSHLLIDISDVLQICCYELGRTYLKLSQALCIN-----IPSIDPCIYIMRYANKLEFA 196
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARK 248
+V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DI+ R
Sbjct: 197 EKTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHEFSRTPNDIV-----RI 251
Query: 249 KELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
++HE S + + L + +T P + +EFM++ LE DP
Sbjct: 252 VKIHE-------------STLRKRLVEFGET--PSSA----LTLDEFMSVD--LEAEQDP 290
Query: 309 PAFQVA-----ERERMVKASAEENSSFERESDSPF-----MSR------------VDKV- 345
PAF+ A ER + ++ S+ E + + E D+ SR VD+V
Sbjct: 291 PAFKAARKKDKERLQKLEESSTEFNQLQAEIDAALEKDLHKSRGRKRKFKGEDISVDEVG 350
Query: 346 ---QSPEPESIGVPKNCTTQ-----TASNEGEGDHTKTP-GV--DATTEASDGSDNFSDI 394
Q + ++ V C + ++ G P G+ D S+ +D I
Sbjct: 351 ETDQFIQESTLEVITECLEENPDETNVDSKINGRRKIVPEGIKPDLLAMCSNNTDRKEKI 410
Query: 395 DDFE--------------VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 440
+ E ++GY+ EEE YK ++W ++ E+L+E KE A +
Sbjct: 411 ETREDDGELYLDDLDDDEINGYIMTEEEARYKDMMWNRLHAEHLKEMKEKEERLAKERE- 469
Query: 441 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 500
EG + EK+++++A KN GP+ +A EA +ML +
Sbjct: 470 ---------EG------------------KPEKKKRKSARKKNIGPSNSAGEAIEKMLQE 502
Query: 501 KRLSSKINYDVLEKLFD 517
K++S+KINYD+L+ L D
Sbjct: 503 KKISTKINYDILKTLTD 519
>gi|366994093|ref|XP_003676811.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
gi|342302678|emb|CCC70454.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
Length = 657
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 135/235 (57%), Gaps = 17/235 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG----------ASR 67
++ L C CG V ED+ +E TF + +AG + + G+F+ QS G SR
Sbjct: 87 NNDLVCLSCGVVSEDNPIVSEVTFGETSAGAAMVQGSFIGAGQSHAGFMSHGGSSALESR 146
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E + A +R + +ALNI E I A ++Y +A+A NF +GRR++ V ASCLY+AC
Sbjct: 147 ENTLNNARRKLRAVSHALNIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVAC 204
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+I + L DPSIF+ F ++L
Sbjct: 205 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITE----LPLADPSIFIQHFAEKLE 260
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K KV A + M DW+ GR+P+G+ GA + ++ + L+ + S+I+
Sbjct: 261 LGDKKIKVVKDAVKLAQRMSHDWMFEGRRPAGIAGACILLACRMNNLRRTHSEIV 315
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAAKAAL 441
D +N D+DD E++ L +EE K+ IW +N EYL EQ +K EA A
Sbjct: 520 DDPENLEDVDDEELEAQLLDEEASKLKERIWLGINGEYLLEQESKRLKEEADMVTGNTAN 579
Query: 442 EASYKNCPEGLQAAQ-ELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALEATRRML 498
+ + + E+ + A V ++ +AA A+ +G TA ++ + ML
Sbjct: 580 KKRRGGGGGRRKKPKTEITTSNATGVLAQLTDRTGLQAALKAAEENGDFTTA-DSVKNML 638
Query: 499 TKKRLSSKINYDVLEKLF 516
K S KINYD ++ LF
Sbjct: 639 QKATFSKKINYDAIDGLF 656
>gi|410079855|ref|XP_003957508.1| hypothetical protein KAFR_0E02200 [Kazachstania africana CBS 2517]
gi|372464094|emb|CCF58373.1| hypothetical protein KAFR_0E02200 [Kazachstania africana CBS 2517]
Length = 576
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 138/235 (58%), Gaps = 17/235 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----YGAS-----R 67
++ L C CG V ED+ +E TF + ++G + + G+F+ QS +G S R
Sbjct: 20 NNDLVCKECGTVSEDNPIVSEVTFGETSSGAAMIQGSFISAGQSHASFMSHGGSSALESR 79
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++ A +R + +AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+AC
Sbjct: 80 ENTLKNARRKLRAVSHALSIPEY--ITDAAFQWYKLALAHNFVQGRRSQNVIASCLYVAC 137
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+IA+ L DPSIF+ F ++L
Sbjct: 138 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHIAE----LPLADPSIFIQHFAEKLE 193
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K KV A + M DW+ GR+P+G+ GA + ++ + L+ + S+I+
Sbjct: 194 LGDKKIKVVKDAVKLAQRMSNDWMFEGRRPAGIAGACVLLACRMNNLRRTHSEIV 248
>gi|68072423|ref|XP_678125.1| transcription factor IIIb subunit [Plasmodium berghei strain ANKA]
gi|56498490|emb|CAH96336.1| transcription factor IIIb subunit, putative [Plasmodium berghei]
Length = 728
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 137/247 (55%), Gaps = 16/247 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C +C ++ C RCG VLE++ FV+N G + G F+ ++
Sbjct: 3 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 62
Query: 59 IQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+G SRE ++K + +++++ + L++ S + + A+R Y +A+ RNFT GR
Sbjct: 63 FMLSWGIRESREISLQKGYINIQKIADNLHL--STQHIEAAQRIYLMALQRNFTMGRNNS 120
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ASCLY CR++ P +LIDFS+ L LG +L+L ++L+I+ + +DPS
Sbjct: 121 YVAASCLYTICRREKSPIMLIDFSDILQT-PKPLGKTFLKLLRLLHIS-----VPNIDPS 174
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+FL +F +L L KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+
Sbjct: 175 LFLERFAYKLNLKNDIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGINI 234
Query: 236 SKSDIIE 242
+ + I E
Sbjct: 235 NSNTIAE 241
>gi|444316962|ref|XP_004179138.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
gi|387512178|emb|CCH59619.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
Length = 549
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 138/245 (56%), Gaps = 14/245 (5%)
Query: 4 CSSC--ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
C C V H ++ L C CG V ED+ +E TF ++AAG + + G+FVR Q+
Sbjct: 5 CGKCKSTEFVRDHANANNDLVCVGCGVVFEDNPIVSEVTFGESAAGAAVVHGSFVRADQA 64
Query: 62 EYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
ASRE + A +R + +AL I E + A ++Y +A+A F +GRR +
Sbjct: 65 ASTGRGALASRETTLLHARRRIRAVAHALAIPE--HVTDAAFQWYKLALAHGFVRGRRAQ 122
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V A+CLY+ACR++ P +L+DFS L ++VY +GA +LQL + L++ D L DPS
Sbjct: 123 NVVAACLYVACRKERTPHMLVDFSARLQVSVYAVGATFLQLVRKLHVQD----LPLADPS 178
Query: 177 IFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
IF+ FT+RL G + +V A + M RD + GR+P+G+ GA + ++ + L+
Sbjct: 179 IFIQHFTERLALGSRQVRVARDAVRLAQRMARDGMQDGRRPAGVAGACVLLACRMNNLRR 238
Query: 236 SKSDI 240
+ ++I
Sbjct: 239 THAEI 243
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 385 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 444
SD ++ D+DD E+D L +EE K+ +W +N +YL EQ
Sbjct: 437 SDDPEDLGDVDDEELDSQLLDEESSAAKERVWLHLNADYLLEQ----------------- 479
Query: 445 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG---PAQTALEATRRMLTKK 501
E + QE A AA A RK++ ++ A + G TA ++ + ML K
Sbjct: 480 -----ENKRLKQE-ADEAAGNTAHVRKKRTRQVAKIEPHDGLQIEPDTAADSVKSMLQKA 533
Query: 502 RLSSKINYDVLEKLF 516
S KINYD ++ LF
Sbjct: 534 SFSKKINYDAIDGLF 548
>gi|440493061|gb|ELQ75570.1| Transcription initiation factor TFIIIB, Brf1 subunit, partial
[Trachipleistophora hominis]
Length = 429
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 127/522 (24%), Positives = 226/522 (43%), Gaps = 123/522 (23%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C +C S +CC +CG + E+ ++ F +N G SQL+G FVR +
Sbjct: 23 CKTCGSTDIDDGHSTSNICCRKCGTLNEELFITSSLNFTENN-GSSQLNGQFVRITDTYA 81
Query: 64 GASRERLMEKAFDDMRQMKNAL-NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
+ Q+KN ++G SDE+ A R+Y +++ N T+GR ++C
Sbjct: 82 KVGGNIIRTTNLQIQNQIKNICGSLGLSDEVAQSAYRWYKLSLQGNLTRGRNILYTLSAC 141
Query: 123 LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF 182
+Y+ CRQ+ P LLIDF+ L+++V+++G +++++ L + + +DPS+FLH+F
Sbjct: 142 IYIVCRQEKTPHLLIDFAQLLDLDVFKIGNIFMRIVVFLNVK-----VPLIDPSLFLHRF 196
Query: 183 TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG-----LKFSK 237
+ L N K+ A +++ MKRDWI GR+P+ LCGAAL ++ + L+ +K
Sbjct: 197 FSK-LKLKNGKILLFAMRLISRMKRDWIVVGRRPNNLCGAALVTASRVYAEERSVLEVAK 255
Query: 238 SDII--EDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 295
+ + R KE+ + +ANL N N L K +D P S Y+
Sbjct: 256 AVKVSPHTINIRLKEMCDTQSANLTVN----DFFNVWLEKEEDP--PI------SKYKLK 303
Query: 296 MTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGV 355
M + +E G P V+E++ +V D F+
Sbjct: 304 MVDDKTIESGMLTPTSDVSEKDALV-------------FDEQFL---------------- 334
Query: 356 PKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKII 415
AT + +D D+ ID E++ ++ +EE K+ +
Sbjct: 335 ------------------------ATYDHNDTEDS---IDSEELECFILTKEEAKQKEKV 367
Query: 416 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 475
W+ M +L E+A + +R+++ +
Sbjct: 368 WDAMYDGFLRERAVR------------------------------------GSTRRKEHK 391
Query: 476 KRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
KR +T +A + ++ +K++++KINY+ L+ LFD
Sbjct: 392 KRKPRV----VYETVEDALKGVIKEKKMTNKINYEALKGLFD 429
>gi|392572943|gb|EIW66086.1| hypothetical protein TREMEDRAFT_35498, partial [Tremella
mesenterica DSM 1558]
Length = 731
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 126/231 (54%), Gaps = 20/231 (8%)
Query: 16 PYDSQL-----CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-------IQSEY 63
P+++ L C C ++E +E F ++A G+ + G FV I+
Sbjct: 9 PFETNLSAGTTICGSCYTIVEQGILVSEIGFGESAGGRVHVQGQFVSRFATGIAGIRGAS 68
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
AS E+ + ++ + +A+NI I+ A+R+YG+AV F +GRR E + ASCL
Sbjct: 69 SASSEKAKQDGQAKVKSVGDAMNI--EPHIIRGAQRWYGLAVDNRFNRGRRIEYIVASCL 126
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
YL CR K P +LIDFS L INVYELG YL+L +L + + + +VDP+I+ +F
Sbjct: 127 YLQCRMKKDPHMLIDFSERLTINVYELGGTYLKLRSILSL---TETMPEVDPAIYNLRFA 183
Query: 184 DRLLPGGNKKVCDTARDILASMKR---DWITTGRKPSGLCGAALYVSALTH 231
+RL G V A D ++R DW+T GR+P+GLCGA L ++A H
Sbjct: 184 NRLSFGAPAVVHAIAADASKLIRRFAADWMTQGRRPAGLCGACLIIAARMH 234
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 389 DNFSDIDDFEVDGY-LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 447
D F DIDD E+D Y + ++ E+ + +W N ++LEE+ ++ K ALE K
Sbjct: 555 DVFEDIDDEELDKYWIMDDHERDTRARMWLSSNGKWLEEEKTRQE-----KKALEEKRKG 609
Query: 448 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKI 507
R + + KR P TA EA + K+ SS++
Sbjct: 610 -------------------ESGRPKPKTKRKRPTARQKPFTTAREAITTLAIDKKFSSRV 650
Query: 508 NYDVLE 513
NYD LE
Sbjct: 651 NYDALE 656
>gi|241730148|ref|XP_002412272.1| transcription initiation factor IIB, putative [Ixodes scapularis]
gi|215505511|gb|EEC15005.1| transcription initiation factor IIB, putative [Ixodes scapularis]
Length = 619
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 45/327 (13%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C C P C CG VLED +E F +NA G S+ G +
Sbjct: 7 CQHCGCSEIDTDPARGDAVCTNCGSVLEDSIIVSEIQFEENAHGGSRAIGQLISADGTSG 66
Query: 57 RTIQS-EYGA---SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
R++ ++G+ SR ++KA + Q+ L + + + A FY +A+ R+ T+G
Sbjct: 67 RSLGGFQHGSGKESRALTLQKARRKIVQVAERLRLNQ--HCIDTAFNFYKMALTRHLTRG 124
Query: 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ 172
RR V A+C+Y+ CR + P +L+D S+ + +NVYELG +L+L L I +
Sbjct: 125 RRHSHVVAACIYMVCRIEGTPHMLLDLSDVVQVNVYELGKTFLKLSSALCIN-----IPA 179
Query: 173 VDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
+DP +++ +F L +V TA ++ MKRDW+ TGR+PSGLCGAAL V++ H
Sbjct: 180 IDPCLYIVRFAHHLEFADKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVASRLH 239
Query: 232 GLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSC 291
FS++ I+D + K + L G S R
Sbjct: 240 --DFSRT--IKDLVRVVKVCETTIRKRLTEFGDTPSS--------------------RLT 275
Query: 292 YEEFMTISEGLEGGADPPAFQVAERER 318
EEFMTI LE DPP F+ A R++
Sbjct: 276 LEEFMTID--LEEEQDPPCFKAARRKQ 300
>gi|162287069|ref|NP_001088063.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus laevis]
gi|52354750|gb|AAH82860.1| LOC494758 protein [Xenopus laevis]
Length = 660
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 153/564 (27%), Positives = 235/564 (41%), Gaps = 121/564 (21%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGASRERLME 72
C CG VLED+ +E FV+ A G S G FV + S +E +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVEGAGGVSSAVGQFVSSECSGKTPSLGTGFHTNVGKESRAQ 84
Query: 73 KAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR +
Sbjct: 85 TLQNGKRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEG 144
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 145 TPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDK 199
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
N +V TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + ++I R +
Sbjct: 200 NHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVI-----RVVK 254
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPA 310
+ E S + + L + +DT P + + +EFM + LE DPP+
Sbjct: 255 VCE-------------STLRKRLTEFEDT--PTS----QLTVDEFMKVD--LEQECDPPS 293
Query: 311 FQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEG 370
F +R+ + +E S E + S D+++ NE E
Sbjct: 294 FTAGQRKVKRQQLEQELSKKLDEVEGEITSYQDEIE-------------------NELEN 334
Query: 371 DHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM----NREY--- 423
K G+ A+ D DN S I E D H K + E+ R Y
Sbjct: 335 SRPKLKGMYASYSKDDAEDNTSSILGEEDDDEDLEAAANHLNKDFYSELADTSKRVYEHT 394
Query: 424 ---LEEQAAKEAAAAAAKAALEASYKNCP------------------EGL---------- 452
L ++ AA + S K C G+
Sbjct: 395 VKPLPIESLLGPLPTAASLGITDSIKECIAMHEQEKSDNAGDGELDLNGIDDNEIDRYIL 454
Query: 453 -----QAAQELAAAAAAAVAKSRKEKQQKRAAE--------------AKNSGPAQ--TAL 491
+ L A + +KEK+++ A E +K P Q TA
Sbjct: 455 NEKEAEIKTVLWMKENADYLREQKEKEERIAKEKELGIYKEQRPRKPSKRRAPIQASTAG 514
Query: 492 EATRRMLTKKRLSSKINYDVLEKL 515
EA +ML +K++SSKINYDVL L
Sbjct: 515 EAIEKMLEQKKISSKINYDVLRDL 538
>gi|67622824|ref|XP_667830.1| transcription factor IIIb subunit [Cryptosporidium hominis TU502]
gi|54658996|gb|EAL37598.1| transcription factor IIIb subunit [Cryptosporidium hominis]
Length = 646
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 137/245 (55%), Gaps = 18/245 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
CSS + V R + C CG VLE++ F + + G Q+ G+FV R
Sbjct: 9 CSSASIEVHEGR---GETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 65
Query: 59 IQSEYG--ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
YG SRE ++++ + +++++ + L + S + A+R + +AV R+FT GR
Sbjct: 66 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNM 123
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ++CLY CR++ P +LIDFS+ L V LG V+++L ++L + + +DPS
Sbjct: 124 HVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPS 178
Query: 177 IFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+F+ +F ++ G V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+
Sbjct: 179 MFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 238
Query: 236 SKSDI 240
S S+I
Sbjct: 239 SSSEI 243
>gi|323508609|dbj|BAJ77198.1| cgd5_3540 [Cryptosporidium parvum]
gi|323510533|dbj|BAJ78160.1| cgd5_3540 [Cryptosporidium parvum]
Length = 646
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 137/245 (55%), Gaps = 18/245 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
CSS + V R + C CG VLE++ F + + G Q+ G+FV R
Sbjct: 9 CSSASIEVHEGR---GETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 65
Query: 59 IQSEYG--ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
YG SRE ++++ + +++++ + L + S + A+R + +AV R+FT GR
Sbjct: 66 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNM 123
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ++CLY CR++ P +LIDFS+ L V LG V+++L ++L + + +DPS
Sbjct: 124 HVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPS 178
Query: 177 IFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+F+ +F ++ G V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+
Sbjct: 179 MFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 238
Query: 236 SKSDI 240
S S+I
Sbjct: 239 SSSEI 243
>gi|66358198|ref|XP_626277.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
gi|46227281|gb|EAK88231.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
Length = 648
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 137/245 (55%), Gaps = 18/245 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
CSS + V R + C CG VLE++ F + + G Q+ G+FV R
Sbjct: 11 CSSASIEVHEGR---GETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 67
Query: 59 IQSEYG--ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
YG SRE ++++ + +++++ + L + S + A+R + +AV R+FT GR
Sbjct: 68 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNM 125
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ++CLY CR++ P +LIDFS+ L V LG V+++L ++L + + +DPS
Sbjct: 126 HVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPS 180
Query: 177 IFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+F+ +F ++ G V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+
Sbjct: 181 MFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 240
Query: 236 SKSDI 240
S S+I
Sbjct: 241 SSSEI 245
>gi|363753818|ref|XP_003647125.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890761|gb|AET40308.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
Length = 577
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 157/605 (25%), Positives = 262/605 (43%), Gaps = 119/605 (19%)
Query: 1 MVWCSSCARHVTGHRPY---DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR 57
M C +C H R ++ L C CG V ED+ +E TF + ++G + + G+F+
Sbjct: 1 MPKCKNCG-HTEFERDLSNANNDLVCKSCGVVSEDNPIVSEVTFGETSSGAAVVQGSFIG 59
Query: 58 TIQSE--YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ +G SRE + A +R + +AL I E + A ++Y +A+A
Sbjct: 60 AGQAHAAFGVRGGTSALESREATLNNARRKLRAVSHALQIPEY--VTDAAFQWYKLALAY 117
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR++ V ASCLY+ACR++ +LIDFS+ L ++VY +GA +L+L + L+I D
Sbjct: 118 NFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKLVKALHITD-- 175
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L G K KV A + M +DW+ GR+P+G+ GA L +
Sbjct: 176 --LPLADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQRMSKDWMYEGRRPAGIAGACLLL 233
Query: 227 SALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG 286
+ + L+ + S+I+ ++ L + +NE K+ ++GK
Sbjct: 234 ACRMNNLRRTHSEIVAVSHVAEETLQQ--------------RLNEF--KNTNSGK----- 272
Query: 287 LCRSCYEEFMTISEGLEGGADPPAFQVAE-RERMVKASAEEN---SSFERESDSPFMSRV 342
L + + + L+ G+ PP+FQ +E+ +K + + + E S +P +S+V
Sbjct: 273 LSIKQFRDVDEDDQALQEGSKPPSFQRNRIKEKKLKERIQTDHMEADDEALSKNPILSQV 332
Query: 343 DKVQ--------------SPEPESIGVPKNCTTQTASNEG------EGDHTKTPGVDAT- 381
Q S E + T + E E D K D
Sbjct: 333 LGEQQLSSREVLYYLKQISDRREQALIKLRSTENGSDGENLKNSFKEHDREKRLHADMVE 392
Query: 382 -----------TEASDGSDNFSDIDDF--EVDGY----LH------------NEEEKHYK 412
T+A G + DID + E D Y LH +++ ++ +
Sbjct: 393 GKEELQLTEVGTDAVSGKNFQDDIDGYSLEKDPYRPRNLHLLPTTRTLLSKVSDDPENLE 452
Query: 413 KIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKE 472
+ +E+N L+E+A + + Y E + QE A+ K R+
Sbjct: 453 DVDDDELNAHILDEEAFR--LKERIWIGINGEYLLEQESKRLKQEADLASGNTSLKKRRG 510
Query: 473 KQQKR------------AAEAKNSGPAQTALEA---------TRRMLTKKRLSSKINYDV 511
+QKR A + Q+ L+A + ML K S KINYD
Sbjct: 511 GKQKRNKPPIIRDLPPGALLVADETGIQSVLQAVQEPTTADSVKNMLQKTSFSKKINYDA 570
Query: 512 LEKLF 516
++ LF
Sbjct: 571 IDGLF 575
>gi|221482805|gb|EEE21136.1| transcription factor IIIB subunit, putative [Toxoplasma gondii GT1]
Length = 675
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 17/226 (7%)
Query: 26 CGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------SRERLMEKAF 75
CG VLED F ++++G + G FV + SRE+ +++ F
Sbjct: 12 CGTVLEDLTLVDGLQFAESSSGGVSMVGQFVSSCTGAGRGLRAGVGGGGDSREQTLQRGF 71
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++ P L
Sbjct: 72 NNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHL 130
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 194
LIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G V
Sbjct: 131 LIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTV 185
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI
Sbjct: 186 AQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDI 231
>gi|237840591|ref|XP_002369593.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|211967257|gb|EEB02453.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|221503402|gb|EEE29100.1| transcription factor IIIB subunit, putative [Toxoplasma gondii VEG]
Length = 675
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 17/226 (7%)
Query: 26 CGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------SRERLMEKAF 75
CG VLED F ++++G + G FV + SRE+ +++ F
Sbjct: 12 CGTVLEDLTLVDGLQFAESSSGGVSMVGQFVSSCTGAGRGLRAGVGGGGDSREQTLQRGF 71
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++ P L
Sbjct: 72 NNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHL 130
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 194
LIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G V
Sbjct: 131 LIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTV 185
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI
Sbjct: 186 AQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDI 231
>gi|95007308|emb|CAJ20528.1| transcription factor IIIb subunit, putative [Toxoplasma gondii RH]
Length = 644
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 17/226 (7%)
Query: 26 CGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------SRERLMEKAF 75
CG VLED F ++++G + G FV + SRE+ +++ F
Sbjct: 12 CGTVLEDLTLVDGLQFAESSSGGVSMVGQFVSSCTGAGRGLRAGVGGGGDSREQTLQRGF 71
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++ P L
Sbjct: 72 NNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHL 130
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 194
LIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G V
Sbjct: 131 LIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTV 185
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI
Sbjct: 186 AQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDI 231
>gi|365983082|ref|XP_003668374.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
gi|343767141|emb|CCD23131.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
Length = 636
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 141/254 (55%), Gaps = 19/254 (7%)
Query: 1 MVWCSSC--ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
M C SC H +S L C CG V ED+ +E TF + +AG + + G+F+
Sbjct: 1 MPVCKSCKGTEFERDHSNANSDLVCKSCGFVSEDNPIVSEVTFGETSAGAAVVQGSFIGA 60
Query: 59 IQSE-----YGAS-----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
QS +G S RE + A +R + +AL+I E I A ++Y +A+A N
Sbjct: 61 GQSHASFMSHGGSSALDSRENTLNNARRKLRAVSHALSIPEY--ITDAAFQWYKLALAYN 118
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
F +GRR++ V ASCLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L+I+
Sbjct: 119 FVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHISK--- 175
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L DPS+F+ F ++L G K KV A + M DW+ GR+P+G+ GA + ++
Sbjct: 176 -LPLADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQRMSHDWMFEGRRPAGIAGACVLLA 234
Query: 228 ALTHGLKFSKSDII 241
+ L+ + S+I+
Sbjct: 235 CRMNNLRRTHSEIV 248
>gi|209877443|ref|XP_002140163.1| transcription factor IIIB subunit BRF-1 [Cryptosporidium muris
RN66]
gi|209555769|gb|EEA05814.1| transcription factor IIIB subunit BRF-1, putative [Cryptosporidium
muris RN66]
Length = 611
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 132/227 (58%), Gaps = 15/227 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RTIQSEYG--ASRERLMEKA 74
C CG VLE++ F +++ G Q+ G+FV R YG SRE ++++
Sbjct: 23 ICTNCGTVLEENTMVEGFQFSESSNGSIQMVGHFVPSSGVRGFALVYGNRESREHVLQRG 82
Query: 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 134
+ +++++ + L++ S + A+R + +AV RNFT GR V ++CLY CR++ P
Sbjct: 83 YHNLQRIADQLHLSASH--IESAQRVFLMAVQRNFTIGRNNMYVASACLYAICRREKTPH 140
Query: 135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKK 193
+LIDFS+ L V LG V+++L ++L + + +DPS+F+ +F ++ L
Sbjct: 141 MLIDFSDVLQAPVKVLGQVFMKLLRLLRLH-----VPNIDPSMFMERFAAQMNLGNKTHS 195
Query: 194 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ T I+ ++ RDWITTGR+P+GLCGAAL +SA HG+ S ++I
Sbjct: 196 IAATGVRIVQALTRDWITTGRRPTGLCGAALLISARYHGIPVSSNEI 242
>gi|313237620|emb|CBY12764.1| unnamed protein product [Oikopleura dioica]
Length = 569
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 138/268 (51%), Gaps = 27/268 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLS--------GNF 55
C C ++ P + C CG + E++ + F +NA G S + N
Sbjct: 5 CKKCGQYEAEEDPTTGTVVCTNCGAISEENQIVSSIQFTENAGGSSIIGTFHSADGLNNS 64
Query: 56 VRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT 115
V I S RE + KA + + ++ L + + E A +Y +A+ ++FT+GRR
Sbjct: 65 VNHIGSR--NHREVTLRKAKESICRLCAELRLPKQHE--DEAYNYYRLALNKSFTRGRRA 120
Query: 116 EQVQASCLYLACR--QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
EQV ASC+YL+CR + +L+DFS L +NVY LG +L+L Q L I +
Sbjct: 121 EQVYASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTFLKLSQELNITPH-----ML 175
Query: 174 DPSIFLHKFTDRLLPGG----NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
DP ++H+F +L G NK+V +T+ I+ M RDW+T GR+P+G+CGAA ++A
Sbjct: 176 DPVFYIHRFAHQLGFGDSGTKNKEVMETSNRIVQRMNRDWMTEGRRPAGICGAAFVIAAR 235
Query: 230 THGLKFSKSDIIEDFM----ARKKELHE 253
HG + + DI + F +K LHE
Sbjct: 236 MHGFRCNIEDITKVFKIGPNTIRKRLHE 263
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 40/203 (19%)
Query: 321 KASAEENSSFERESDSPFMSRVD--KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV 378
+A A N +F SD+P SR + +++S P P + + E P +
Sbjct: 372 EALARLNPNFVGSSDTPSTSRPENGRLESLLPNESYQPTVESLGITRSHAEMLSLSDPSM 431
Query: 379 D---ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM--NREYLEEQAAKEAA 433
+ + E DG + IDD E+ + NE E K +WE N+E+++ Q K
Sbjct: 432 ENNVSKEELHDGELDLEGIDDDEISCMILNEAEVSRKTTMWENRKENKEWVKRQEEKRLE 491
Query: 434 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA-QTALE 492
A+ N P+ +A R K++ P TA E
Sbjct: 492 EAS----------NPPKAKRA----------------------RKRRGKSTLPEYSTAGE 519
Query: 493 ATRRMLTKKRLSSKINYDVLEKL 515
A + ++ +KR S+ INYDVL L
Sbjct: 520 ALQTVIKQKRFSTNINYDVLNTL 542
>gi|159476536|ref|XP_001696367.1| hypothetical protein CHLREDRAFT_112803 [Chlamydomonas reinhardtii]
gi|158282592|gb|EDP08344.1| predicted protein [Chlamydomonas reinhardtii]
Length = 167
Score = 148 bits (374), Expect = 7e-33, Method: Composition-based stats.
Identities = 72/138 (52%), Positives = 105/138 (76%), Gaps = 3/138 (2%)
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
RNFT+GRR QV A CLY+ CR + +P++LIDFS++L++NVY LGAV+LQL ++L + +
Sbjct: 3 RNFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHLSVNVYALGAVFLQLLKLLRLDEH 62
Query: 167 SNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ K +DPS+FL++F DRL LP KV +TA ++ SMKRDW+ TGR+PSG+CGAA
Sbjct: 63 GTLTKPIDPSLFLNRFVDRLRLPTQELKSKVGNTAMRLVQSMKRDWMLTGRRPSGICGAA 122
Query: 224 LYVSALTHGLKFSKSDII 241
L+++A HG++ +K D+I
Sbjct: 123 LFLAAHIHGVEKTKRDVI 140
>gi|296424786|ref|XP_002841927.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638179|emb|CAZ86118.1| unnamed protein product [Tuber melanosporum]
Length = 553
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 138/249 (55%), Gaps = 21/249 (8%)
Query: 2 VWCSSC-ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
+ C SC + + T +L C CG V+ D +E +F + ++G +++ G++V Q
Sbjct: 3 ITCPSCGSSNPTDFDDSTGRLVCTNCGHVVNDSFIVSEISFGETSSGAARVQGSYVAEGQ 62
Query: 61 SEYGA------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
+ G SRE++++ + ++ A+N E A+R++ ++V N
Sbjct: 63 THAGGGGGRFRSGNSLESREQIIQNGRRKIVELAGAVNCPE--HFADHAQRWFTLSVTHN 120
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
F +GR+T+ V A CLY+ CR + +LIDFS+ LN+NV+ LG YLQL Q+L +
Sbjct: 121 FNRGRKTQFVIACCLYIVCRLEKSSHMLIDFSDILNVNVFSLGHTYLQLVQILEVR---- 176
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L +DP++++++F L G + KV + A I+ M RDW+ GR+PSG+CGAAL ++
Sbjct: 177 -LPHIDPTVYVYRFAKHLDFGSEQTKVANDALRIIQRMSRDWMVQGRRPSGICGAALILA 235
Query: 228 ALTHGLKFS 236
A + + S
Sbjct: 236 ARMNNFRRS 244
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 28/122 (22%)
Query: 397 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 456
FEV L EEE++ K+ IW E N++YL ++ K E +N
Sbjct: 459 FEVQNALLTEEERNLKEKIWVEFNKDYLLKRLKK-----------ETDLRN--------- 498
Query: 457 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
+ K+ +++++ + ++ + A T ++ + ML ++ S KINY +E LF
Sbjct: 499 --------GIIKTARKRKRNKPRDSNSEDMAATPADSAKNMLMRRSYSKKINYKAIEGLF 550
Query: 517 DD 518
+D
Sbjct: 551 ED 552
>gi|336381997|gb|EGO23148.1| hypothetical protein SERLADRAFT_371381 [Serpula lacrymans var.
lacrymans S7.9]
Length = 593
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 138/253 (54%), Gaps = 22/253 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------R 57
C+ C V + C +CG V+E++ +E TF + +AG + + G++V
Sbjct: 41 CTDCGGTVIEYDAAAGNGFCVKCGTVVEENTIVSEVTFGETSAGAAMVQGSYVGQGSTHA 100
Query: 58 TIQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ +G SRE+ + A ++ AL + E + A R Y +AV FTKG
Sbjct: 101 RMNGPFGNRGSSESREQTIANASRKIQSFAAALRLSEV--VSLAATRLYTLAVEHKFTKG 158
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 159 RKSLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLK-----LP 213
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G + KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 214 LVDPSHYISRFA-ALLEFGEETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 272
Query: 230 THGLKFSKSDIIE 242
+ + S +I++
Sbjct: 273 MNNFRRSVEEIVQ 285
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 42/131 (32%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D +D+ E+D +L +EE K+ +W E+NREYLE
Sbjct: 422 DELQGLDEEELDRFLLTDEEVRIKERVWVELNREYLE----------------------- 458
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 507
A+A RK+ K + SG TA E+ R ++ K + S +I
Sbjct: 459 ----------------AIAAKRKKTNNKPRDASTPSG--STAAESVRNLIKKNPKYSKRI 500
Query: 508 NYDVLEKLFDD 518
NYD L+ LF D
Sbjct: 501 NYDALKDLFMD 511
>gi|224034963|gb|ACN36557.1| unknown [Zea mays]
Length = 195
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL
Sbjct: 5 RQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLL 64
Query: 188 PGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G N V DTA I+ASMKRDW+ T RKPSGLCGAALY++AL+HG ++K+DI+
Sbjct: 65 GLGRRNNDVSDTALRIVASMKRDWMQTRRKPSGLCGAALYIAALSHGCNYTKADIV 120
>gi|294949376|ref|XP_002786166.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
gi|239900323|gb|EER17962.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
Length = 597
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----YGASRERLM--E 72
Q C CG+VLE++ E +F + + ++ ++G V + Y + RL+ +
Sbjct: 23 QTVCLGCGEVLEENRVVCELSFTQ-SGDRTGVNGQSVPWLGGGGRRGGYSSENSRLLTLQ 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ + + N L + S + AKR + +A RNFT GR+T V A+CLY+ CR+
Sbjct: 82 RGSTRIEWIGNRLELPTS--TMDEAKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRT 139
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
P+LLIDFS+ L+I+V E+G +Y++L ++L + D+ + +DPS+F+ +F+ L G +
Sbjct: 140 PYLLIDFSDVLHISVREIGQMYMKLVRLLSL-DKVLDIPVIDPSMFMERFSSHLGLGDKQ 198
Query: 193 -KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+V TA ++ M RDWI TGR+P+GLCGAAL ++A HG++
Sbjct: 199 NQVVHTAIRLIQLMSRDWICTGRRPTGLCGAALLIAARYHGVE 241
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
++ SD+ D E++GYL EE K IW + N+ YL E A ++ A + A + + +N
Sbjct: 488 ESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKRRAEDEAKRNG 547
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RLSSK 506
K +KR + GPA +ALEAT+ L+KK LS++
Sbjct: 548 ----------------------TYKPRKRPIHSAPMGPADSALEATQMALSKKARSLSNR 585
Query: 507 INYDVLEKLF 516
+N LE+LF
Sbjct: 586 VNMSALEELF 595
>gi|323451551|gb|EGB07428.1| hypothetical protein AURANDRAFT_71825 [Aureococcus anophagefferens]
Length = 1025
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 31/245 (12%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE------------------- 62
C RCG V E+ + F ++ G S + G FV ++
Sbjct: 412 VCVRCGTVCEESTIVSSIEFAESGGGASSVVGQFVSASCTKPFGGLGGSGWGGSRGGGRP 471
Query: 63 ----YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+SRE + + Q+ ++L +G V A R +G+A RNFT+GR+T V
Sbjct: 472 RYGFLRSSRETTLATGRRKIAQVASSLRLGA--HFVDGAHRLFGMAAQRNFTQGRKTLHV 529
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
+CLY+ CR++ +LIDFS+ L +NVY LGA +L+ ++L + L +DPS++
Sbjct: 530 VCACLYVMCRREKSAHMLIDFSDVLQVNVYALGATFLKFRRLLNLE-----LPIIDPSLY 584
Query: 179 LHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+H+F +L G V TA ++ MKRDWI TGR+P+G+C AAL V A HG ++
Sbjct: 585 IHRFAAKLELGDKCGAVATTALRVVQRMKRDWIETGRRPAGVCAAALLVGARAHGFHRTQ 644
Query: 238 SDIIE 242
D+++
Sbjct: 645 DDVVK 649
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 391 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 450
F+D+ D E+DG++ +EE K IW MN++YL ++ K+ AAA A P+
Sbjct: 822 FADVADDEIDGFILTDEEVKQKSEIWTTMNKDYLAQRDEKDKLAAARAEASAG-----PD 876
Query: 451 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 510
G + AK ++ +A A+ S ++TA EA ++ KKR S KINY
Sbjct: 877 G---------GPSDKAAKRGRKASAGKAKGARASKDSRTAKEALIDVVEKKRFSKKINYG 927
Query: 511 VLEKLFDD 518
VLE +F D
Sbjct: 928 VLEGIFGD 935
>gi|399218262|emb|CCF75149.1| unnamed protein product [Babesia microti strain RI]
Length = 592
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 138/245 (56%), Gaps = 15/245 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C CA + + C CG VLE+ + + +G S + G F+ R
Sbjct: 8 CKYCAFERIEYCDEQGETLCINCGAVLEERGMVELLQYSETPSGGSAIVGQFLPTVGCRH 67
Query: 59 IQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+ +G+ SR +++++ + +++++ L++ S + V A+R Y +AV R+FT GR
Sbjct: 68 VTLAFGSKQSRGQIIQRGYSNIQRIAGYLHL--STQHVEAAQRIYLLAVQRSFTIGRNNL 125
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V A CLY+ CR++ P LLIDFS+ L V LG ++++L ++L+I+ + VDPS
Sbjct: 126 HVAACCLYIICRREKTPHLLIDFSDVLQTPVKILGQIFMKLVRLLHIS-----VPNVDPS 180
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
IF +F +L + +++ T ++ +M RDW+ TGR+P+GLCGAAL V++ HG+
Sbjct: 181 IFFERFASQLKIKDKIRQITATGIRLIQAMDRDWLCTGRRPTGLCGAALVVASRYHGVPL 240
Query: 236 SKSDI 240
S+S +
Sbjct: 241 SESAV 245
>gi|193599116|ref|XP_001950065.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Acyrthosiphon pisum]
Length = 491
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 154/539 (28%), Positives = 245/539 (45%), Gaps = 117/539 (21%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-----EYGA------- 65
D C CG V+++ + +E F + G S+ G F+ + +G+
Sbjct: 15 DGPTVCMDCGGVMDESHIVSEVQFEETDHG-SRAVGQFLSSDSQAANFHNFGSAFHHGMK 73
Query: 66 --SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
SRE KA ++ + N+LN+ S + + A +Y +A+ R+FT+GR+ + A+ +
Sbjct: 74 QPSREMTQAKARRGIQVLSNSLNL--SPQTLENACVYYNMALKRHFTRGRKNALIYAASV 131
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y+ACR + +L+D ++ +N +ELG YL++ Q L + + +DPSIFL +F
Sbjct: 132 YIACRMEGTMHMLLDVADASEVNAFELGKTYLRMMQTLTLT-----VPSLDPSIFLMRFV 186
Query: 184 DRLLPGGNKKVC-DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ L G + TA +L M RD I TGR+PS LCGAAL +S H + DII
Sbjct: 187 NSLDFGDKTHIVYTTAMRLLQRMMRDSIHTGRRPSSLCGAALLISGRMHDFNRTTDDII- 245
Query: 243 DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 302
K +H A + + L + KDT EEFMT+ L
Sbjct: 246 ------KVVHCHHAT-----------LKKRLLEFKDTPSSMLS------IEEFMTVD--L 280
Query: 303 EGGADPPAFQVA---ERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNC 359
E DPP+++VA ++ER+ K F +DS + +D+V++ + + KN
Sbjct: 281 EETHDPPSYRVARARDKERIDK--------FFEANDSEKV--IDEVKTAIEKELSKKKNT 330
Query: 360 TT--------QTASNEGEGDHTKTPGVDATTEASDGSDNFSD--------------IDDF 397
T A + G K V + E S+N ID+
Sbjct: 331 TVLGVNLVEIAAAVSPEPGSSCKPVNVGPSLEIMGLSENKRSYEEDDEEESMCDVVIDED 390
Query: 398 EVDGYLHNEEEKHYKKIIWEEMN-REYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 456
E+D Y+ ++E K+ +W +M+ + + Q ++E A KN P+ ++A
Sbjct: 391 EIDSYILSKESHQIKRNMWMKMHGTAFRKMQLSREERA-----------KN-PKVIRA-- 436
Query: 457 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KEK+ K A PA+TA EA R+L KK+LSSKINYD+L+ L
Sbjct: 437 --------------KEKKAKNALRT----PAKTAAEAVERVLKKKKLSSKINYDILDNL 477
>gi|299738096|ref|XP_001838087.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
gi|298403152|gb|EAU83664.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
Length = 864
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 138/253 (54%), Gaps = 22/253 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C+ C V + C +CG V+E++ E F + + G + + G+FV
Sbjct: 169 CNECGGSVIEYDHAAGNGFCIQCGTVVEENLIVNEIVFGETSNGAAIVQGSFVAQGATHA 228
Query: 59 -IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ YG SRE+ + A ++ + N L + E+ + A R Y +AV FTKG
Sbjct: 229 RMSGPYGNRGSTESREQTIANANKKIQSIANVLRLNET--VCLAATRLYTLAVEHKFTKG 286
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK +K ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 287 RKSLNVVAVCLYVACRQKETKTYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR-----LP 341
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 342 LVDPSHYISRFA-ALLEFGDETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 400
Query: 230 THGLKFSKSDIIE 242
+ + S +I++
Sbjct: 401 MNNFRRSVEEIVQ 413
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 388 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 447
D S +D+ E+D ++ +E+E K+ +W E+NREYLE AAK A
Sbjct: 621 GDELSGLDEEELDRFILSEQEVKIKERVWVELNREYLEALAAKGDQTEPA---------- 670
Query: 448 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 506
KSRK ++ ++ TA E+ R ++ K + S +
Sbjct: 671 -------------------TKSRKRRKTNNKPRDASTPAGGTAAESVRNLIKKNPKYSKR 711
Query: 507 INYDVLEKLFDDS 519
INYD L+ LF D
Sbjct: 712 INYDALKDLFVDG 724
>gi|403412356|emb|CCL99056.1| predicted protein [Fibroporia radiculosa]
Length = 715
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 141/253 (55%), Gaps = 22/253 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C+ C V + C +CG V+E++ E F + + G + + G+FV
Sbjct: 30 CTDCGGTVIEYDAAAGNGFCVQCGTVVEENAIVNEVAFGETSTGAAMVQGSFVGQGATHA 89
Query: 59 -IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ +G SRE+ + A ++Q+ NA+++ E + A R Y +AV FTKG
Sbjct: 90 RMGGPFGNRGSSESREQTIANASRKIQQVANAMHLSEV--VCLSATRLYTLAVEHKFTKG 147
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 148 RKSMNVVAVCLYVACRQKETRNYMLIDFSDMLQVNVFELGHTYLQLVQTLNLR-----LP 202
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ +V A ++A RDW+T GR+P+G+CGA L ++A
Sbjct: 203 LVDPSHYVSRFA-ALLEFGDETHQVALDATRLVARFDRDWMTRGRRPAGICGACLLLAAR 261
Query: 230 THGLKFSKSDIIE 242
+ + S ++I++
Sbjct: 262 MNNFRRSVAEIVQ 274
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 28/134 (20%)
Query: 387 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 446
G D +D+ E+D ++ EEE K+ +W E+N++YLE AA+E
Sbjct: 504 GDDELLGLDEDELDQFILTEEEVRIKERVWVELNKDYLEAIAAREER------------- 550
Query: 447 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RLS 504
Q A++ + K RK + R A S P+ + + + R L KK + S
Sbjct: 551 ------QHAEDKEKSGG---RKRRKTSNKPRDA----STPSGSTVAESVRNLIKKNPKYS 597
Query: 505 SKINYDVLEKLFDD 518
+INYD L+ LF D
Sbjct: 598 KRINYDALKNLFVD 611
>gi|313217012|emb|CBY38206.1| unnamed protein product [Oikopleura dioica]
Length = 357
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 138/268 (51%), Gaps = 27/268 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLS--------GNF 55
C C ++ P + C CG + E++ + F +NA G S + N
Sbjct: 5 CKKCGQYEAEEDPTTGTVVCTNCGAISEENQIVSSIQFTENAGGSSIIGTFHSADGLNNS 64
Query: 56 VRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT 115
V I S RE + KA + + ++ L + + E A +Y +A+ ++FT+GRR
Sbjct: 65 VNHIGSR--NHREVTLRKAKESICRLCAELRLPKQHE--DEAYNYYRLALNKSFTRGRRA 120
Query: 116 EQVQASCLYLACR--QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
EQV ASC+YL+CR + +L+DFS L +NVY LG +L+L Q L I +
Sbjct: 121 EQVYASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTFLKLSQELNITPH-----ML 175
Query: 174 DPSIFLHKFTDRLLPGG----NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
DP ++H+F +L G NK+V +T+ I+ M RDW+T GR+P+G+CGAA ++A
Sbjct: 176 DPVFYIHRFAHQLGFGDSGTKNKEVMETSNRIVQRMNRDWMTEGRRPAGICGAAFVIAAR 235
Query: 230 THGLKFSKSDIIEDFM----ARKKELHE 253
HG + + DI + F +K LHE
Sbjct: 236 MHGFRCNIEDITKVFKIGPNTIRKRLHE 263
>gi|294914332|ref|XP_002778249.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239886452|gb|EER10044.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 564
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----YGASRERLM--E 72
Q C CG+VLE++ E +F + + ++ ++G V + Y + RL+ +
Sbjct: 7 QTVCLGCGEVLEENRVVCELSFTQ-SGDRTGVNGQSVPWLGGGGRRGGYSSENSRLLTLQ 65
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ + + N L + S + AKR + +A RNFT GR+T V A+CLY+ CR+
Sbjct: 66 RGSTRIEWIGNRLELPTS--TMDEAKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRT 123
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
P+LLIDFS+ L+++V E+G +Y++L ++L + D+ + +DPS+F+ +F+ L G +
Sbjct: 124 PYLLIDFSDVLHVSVREIGQMYMKLVRLLSL-DKVLDIPVIDPSMFMERFSSHLGLGDKQ 182
Query: 193 -KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+V TA ++ M RDWI TGR+P+GLCGAAL ++A HG++
Sbjct: 183 NQVVHTAIRLIQLMSRDWICTGRRPTGLCGAALLIAARYHGVE 225
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D ++ SD+ D E++GYL EE K IW + N+ YL E A ++ A K A + +
Sbjct: 452 DDEESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKKRAEDEAK 511
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RL 503
+N K +KR + GPA +ALEAT+ L+KK L
Sbjct: 512 RNG----------------------TYKPRKRPVPSTAMGPADSALEATQMALSKKARSL 549
Query: 504 SSKINYDVLEKLF 516
S+++N LE+LF
Sbjct: 550 SNRVNMSALEELF 562
>gi|413946302|gb|AFW78951.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 148
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y SR+R ++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V
Sbjct: 61 ESGYSMSRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINV 147
A+CLY+ACRQ K +LLIDFS++L I+V
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDHLQISV 148
>gi|367016367|ref|XP_003682682.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
gi|359750345|emb|CCE93471.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
Length = 545
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 135/235 (57%), Gaps = 17/235 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA--------SR 67
++ L C CG V ED+ +E TF + + G + + G+F+ Q+ +G+ SR
Sbjct: 20 NNDLVCKNCGVVSEDNPIVSEVTFGETSGGAAVVQGSFIGAGQTHASFGSHGGSSALESR 79
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E + A +R + +ALNI E I A ++Y +A+A NF +GRR++ V A+CLY+AC
Sbjct: 80 EATLNNARRKLRAVSHALNIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIAACLYVAC 137
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L + VY +GA +L++ + L+I L DPS+F+ F ++L
Sbjct: 138 RKEKTHHMLIDFSSRLQVGVYSIGATFLKMVKRLHITK----LPLADPSLFIQHFAEKLD 193
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K KV A + M RDW+ GR+P+G+ GA + ++ + L+ + S+I+
Sbjct: 194 LGDKKIKVVRDAVKLAQRMSRDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIV 248
>gi|395328548|gb|EJF60939.1| hypothetical protein DICSQDRAFT_170484 [Dichomitus squalens
LYAD-421 SS1]
Length = 724
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 136/252 (53%), Gaps = 20/252 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--TIQS 61
C+ C V + C +CG V+E++ E TF + + G + + G+FV ++
Sbjct: 12 CTDCGGTVIEYDAAAGNGFCVQCGTVVEENTIVNEVTFGETSTGAAMVQGSFVAQGATRA 71
Query: 62 EYGA---------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
G SRE+ + A ++Q+ AL + E + A R Y +AV FTKG
Sbjct: 72 RMGGMFGNRGNTESREQTIANASRKIQQVATALRLSEV--VSLAATRLYTLAVEHKFTKG 129
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 130 RKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR-----LP 184
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDPS ++ +F L G +V A ++ RDW+T GR+P+G+CGA L ++A
Sbjct: 185 LVDPSHYISRFAALLEFGEETHQVAMDAIRLVQRFDRDWMTKGRRPAGICGACLLLAARM 244
Query: 231 HGLKFSKSDIIE 242
+ + S ++I++
Sbjct: 245 NNFRRSVAEIVQ 256
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
++ EEE K+ IW EMN++YLE AAK A Q+
Sbjct: 526 FILTEEEVRIKERIWVEMNKDYLEAIAAK-----------------------AEQQEGQE 562
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDD 518
K RK + R A + TA E+ R ++ K + S +INY+ L++LF D
Sbjct: 563 KEKKSRKRRKTNNKPRDASTPH---GSTAAESVRNLIKKNPKYSKRINYNALKELFTD 617
>gi|392559045|gb|EIW52230.1| hypothetical protein TRAVEDRAFT_24512 [Trametes versicolor
FP-101664 SS1]
Length = 703
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 138/256 (53%), Gaps = 22/256 (8%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--T 58
M C+ C V + C CG V+E++ E TF + + G + + G FV
Sbjct: 1 MTVCTDCGGTVIEYDAAAGNGFCVNCGTVVEENTIVNEVTFGETSNGAAMVQGTFVGQGA 60
Query: 59 IQSEYGA---------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
++ G SRE+ + A ++Q+ AL + E + A R Y +AV F
Sbjct: 61 TRARMGGMFGNRGNTESREQTIANASRKIQQVATALRLSEV--VSLAATRLYTLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L +
Sbjct: 119 TKGRKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F LL G++ +V A ++ RDW+T GR+P+G+CGA L +
Sbjct: 175 -LPLVDPSHYISRFA-ALLEFGDETHQVAMDAVRLVQRFDRDWMTKGRRPAGICGACLLL 232
Query: 227 SALTHGLKFSKSDIIE 242
+A + + S ++I++
Sbjct: 233 AARMNNFRRSVAEIVQ 248
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 27/119 (22%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
+L ++E K+ +W EMNR+YLE A AAKA L+ S + Q+
Sbjct: 510 FLLTDDEVRIKERVWVEMNRDYLE--------ALAAKAELQES--------EDKQKKTRK 553
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDDS 519
K R ++ TA E+ R ++ K + S +INY+ L+ LF D+
Sbjct: 554 RRKTNNKPRD----------ASTPHGSTAAESVRNLIKKNPKYSKRINYNALKDLFTDA 602
>gi|390600638|gb|EIN10033.1| cyclin-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 584
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 142/267 (53%), Gaps = 28/267 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C+ C V + C CG V+E++ +E TF + ++G + + G++V R
Sbjct: 6 CAECGGSVIEYDAAAGNGFCVACGTVVEENTIVSEVTFGETSSGAAMVQGSYVAQGATRA 65
Query: 59 IQSEY-------GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+ G SRE+ + A ++ + L + ES I H A R Y +AV FTK
Sbjct: 66 RMGGFFGNRGGDGESREQTIANASRKIQSVAGILRLSES--ICHAATRLYTLAVEHKFTK 123
Query: 112 GRRTEQVQASCLYLACRQK-SKPFLLIDFSNYL--NINVYELGAVYLQLCQVLYIADESN 168
GR++ V A CLY+ACRQK ++ ++LIDFS+ L ++NV+ELG YLQL Q L +
Sbjct: 124 GRKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQASVNVFELGHTYLQLVQTLNLR---- 179
Query: 169 VLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L VDPS ++ +F L G +V A ++ RDW+T GR+P+G+CGAAL ++
Sbjct: 180 -LPLVDPSHYISRFAALLEFGEETHQVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLA 238
Query: 228 ALTHGLKFSKSDIIE-----DFMARKK 249
A + + S +I++ D RK+
Sbjct: 239 ARMNNFRRSIEEIVQVVKIADVTLRKR 265
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 39/131 (29%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D +D+ E+D ++ EEE ++ +W E+N++YLE
Sbjct: 395 DELQGLDEEELDQFIMTEEEVKIRERVWVELNKDYLE----------------------- 431
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 507
A A + RK + R A + TA E+ R ++ K + S +I
Sbjct: 432 ------------AIAGTYSIRRKANNKPRDASTPH---GSTAAESARNLVKKNPKFSKRI 476
Query: 508 NYDVLEKLFDD 518
NYD L+ LF D
Sbjct: 477 NYDALKDLFID 487
>gi|50287787|ref|XP_446323.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525630|emb|CAG59247.1| unnamed protein product [Candida glabrata]
Length = 598
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 140/252 (55%), Gaps = 17/252 (6%)
Query: 1 MVWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
++ C +C V ++ L C CG V E++ +E TF + ++G + ++G+F+
Sbjct: 2 VLRCKNCGNTELVVDSSTPNNDLVCVACGVVSEENPIVSEVTFAETSSGAATVTGSFLSA 61
Query: 59 IQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
QS SRE + A +R + +ALNI D IV + ++Y +A+A NF
Sbjct: 62 GQSHTSGGLGSNAMESREATLNNAKKKLRAVGHALNI--PDYIVEASHQWYKLALAYNFV 119
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L I L
Sbjct: 120 QGRRSQNVIAACLYIACRKEMTHHMLIDFSSRLQVSVYSIGATFLKMVKRLQITK----L 175
Query: 171 KQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
DPS+F+ F ++L G K KV A + M DW+ GR+P+G+ GA + ++
Sbjct: 176 PLADPSLFIQHFAEKLELGEKKIKVVRDAVKLAQRMSNDWMFEGRRPAGIAGACILLACR 235
Query: 230 THGLKFSKSDII 241
+ L+ + S+I+
Sbjct: 236 MNNLRRTHSEIV 247
>gi|358368039|dbj|GAA84657.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
kawachii IFO 4308]
Length = 752
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------S 66
D Q C CG V+ + N +E TF ++++G + + G FV QS YG S
Sbjct: 73 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSYGPGFQRGGAES 132
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+A
Sbjct: 133 REITEQNGNRYITQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIA 190
Query: 127 CR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +
Sbjct: 191 CRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQ 250
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 251 LEFGSATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 300
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 388 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 441
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL 539
Query: 442 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 491
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDADGRSTRASTPA 587
Query: 492 EATRRMLTKKRLSSKINYDVLEKLFDD 518
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|432948464|ref|XP_004084058.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 690
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 126/233 (54%), Gaps = 21/233 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT------------IQSEYGA-SRER 69
C CG VLED+ +E FV+ + G S G FV + G SR +
Sbjct: 25 CTSCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPVKAPLLGSGFHTSVGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ ++++ + L + + + A F+ +AV+++ T+GR+TE V A+CLYL CR
Sbjct: 85 TLQNGKRQIQKLGSQLQLNQ--HCLDTAFNFFKLAVSKHLTRGRKTEHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + S D+I
Sbjct: 198 LKTHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRSVKDVI 250
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 378 VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 437
VD E S G + IDD E++ Y+ NE+E K +W + N EYL+EQ KE
Sbjct: 446 VDNPMEPS-GELDLEGIDDQEIEKYILNEKEVEVKTGLWMKQNAEYLQEQKEKE------ 498
Query: 438 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 497
E + +E K RK +Q + A TA EA +M
Sbjct: 499 ------------ERINKEKEQGIYKEKQKKKYRKREQIE----------ASTAEEAIEKM 536
Query: 498 LTKKRLSSKINYDVLEKL 515
L KK++SSKINYDVL L
Sbjct: 537 LEKKKISSKINYDVLRDL 554
>gi|449544216|gb|EMD35190.1| hypothetical protein CERSUDRAFT_116658 [Ceriporiopsis subvermispora
B]
Length = 662
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 140/256 (54%), Gaps = 22/256 (8%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--T 58
M C+ C V + C +CG V+E++ E F + ++G + + G+FV
Sbjct: 1 MTVCTDCGGTVIEYDAAAGNGFCVQCGTVVEENTIVNEVVFGETSSGAAMVQGSFVGQGA 60
Query: 59 IQSEYGA---------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
+++ G SRE+ + A ++Q+ A+ + E ++ A R Y +AV F
Sbjct: 61 TRAKMGGPFGNRGNSESREQTIANASRKIQQVATAMRLSEVVQLA--ATRLYTLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L +
Sbjct: 119 TKGRKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F LL G + +V A ++A RDW+ GR+P+G+CGA L +
Sbjct: 175 -LPLVDPSHYISRFA-ALLEFGEETHQVALDATRLVARFDRDWLARGRRPAGICGACLLL 232
Query: 227 SALTHGLKFSKSDIIE 242
+A + + S ++++
Sbjct: 233 AARMNNFRRSVEEVVQ 248
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
+L EEE K+ +W EMN +YLE AAK A A+ A
Sbjct: 468 FLLTEEEVRIKERVWVEMNLDYLEAIAAKSEQQAEAE----------------------A 505
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDDS 519
K RK + R A + TA E+ R ++ K + S +INYD L+ LFD S
Sbjct: 506 KEKKSRKRRKTSNKPRDASTPH---GSTAAESVRNLIKKNPKYSKRINYDALKDLFDGS 561
>gi|320580982|gb|EFW95204.1| TFIIIB B-related factor [Ogataea parapolymorpha DL-1]
Length = 534
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 135/241 (56%), Gaps = 23/241 (9%)
Query: 14 HRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------ 65
H+ S L C RCG V+E++ E TF + +G + L G+ V Q+ +G
Sbjct: 17 HKTASSDLACARCGTVIEENPIVLEVTFGEAPSGAAMLQGSIVGADQTRANFGNNRGSLD 76
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE+ ++ +R + AL I D I A +++ +A+ NF +GRR++ V A+CLY+
Sbjct: 77 SREQTLQNGKKRIRNVAAALKI--KDYIADAACQWFQLALTNNFVQGRRSQNVVAACLYI 134
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD- 184
ACR++ +LIDFS+ L I+VY +GA +L++ + L+I L VDPS+F+ F +
Sbjct: 135 ACRKEKTHHMLIDFSSRLQISVYAVGATFLKMVKALHITS----LPLVDPSLFIQNFAEK 190
Query: 185 ----RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
R+LP KV + A + M DWI GR+P+G+ GA + ++A + + + S+I
Sbjct: 191 LDFGRMLP----KVINDAIKLAHRMSEDWIHEGRRPAGIAGACILLAARMNNFRRTHSEI 246
Query: 241 I 241
+
Sbjct: 247 V 247
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA----- 440
D +N D DD E++ L EEE K+ +W N+E+L Q K A + A
Sbjct: 402 DDPENLDDADDDEINNILLTEEESKLKERLWVGSNQEFLLAQETKRLKEDADRIAGHNQH 461
Query: 441 ---LEASYKNCPEGLQAAQELA---AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
+ + K +G E + A++ + + Q+ AA++ S
Sbjct: 462 PKRRKRTTKTEDKGNDLKSEYGEYLSGASSHLGLTAALNQELSAADSAKS---------- 511
Query: 495 RRMLTKKRLSSKINYDVLEKLFDDS 519
ML K LS KINY+ + +LFDD+
Sbjct: 512 --MLKNKSLSKKINYEAVNELFDDN 534
>gi|255719280|ref|XP_002555920.1| KLTH0H00924p [Lachancea thermotolerans]
gi|238941886|emb|CAR30058.1| KLTH0H00924p [Lachancea thermotolerans CBS 6340]
Length = 571
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 149/591 (25%), Positives = 263/591 (44%), Gaps = 128/591 (21%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA--------SR 67
++ L C CG V ED+ +E TF ++++G + + G++V QS +G SR
Sbjct: 20 NNDLVCKDCGTVSEDNPIVSEVTFGESSSGAAVVHGSYVGAGQSHAAFGPRGGSSALESR 79
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+ + A +R + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+AC
Sbjct: 80 QATINNARRKLRAVSHALGIPEY--VTDAATQWYTLALSNNFVQGRRSQNVIAACLYIAC 137
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+I L DPS+F+ F ++L
Sbjct: 138 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKALHITK----LPLADPSLFIQHFAEKLD 193
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G K KV A + M RDW+ GR+P+G+ GA L ++ + L+ + S+I+
Sbjct: 194 LGDKKIKVVKDAVKLAQRMARDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAVSHV 253
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISE-----G 301
++ L + +NE K +GK ++I+E
Sbjct: 254 AEETLQQ--------------RLNEF--KSTKSGK--------------LSINEFRDDAA 283
Query: 302 LEGGADPPAFQVAE-RERMVKASAEEN---SSFERESDSPFMSRVDKVQ----------- 346
+E A PP+FQ +E+ ++ EN +S E + +P +S+V Q
Sbjct: 284 VESEAQPPSFQRNRAKEKRLRQKIVENEFETSDEALTRNPILSQVLGAQELSSREVLYYL 343
Query: 347 ---SPEPESIGVPKNCTTQTASNEGEGD---HTKTPGVDATTEASDGSDNFSDID----- 395
S E +N ++ T G+ H++ V + +EA +D+D
Sbjct: 344 KQFSQRREKNTQRENISSSTNGLRTHGEATGHSEDAAVSSDSEAGTEHRPDADVDPNSRS 403
Query: 396 DFE--VDGY-----------LH------------NEEEKHYKKIIWEEMNREYLEEQAAK 430
F+ +DGY LH ++ + + + EE++ + L+E+A+K
Sbjct: 404 HFQDAIDGYSVETDPHRPRNLHLLPTTSALLSKVADDPEDLQDVDDEELDSQLLDEEASK 463
Query: 431 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE---------- 480
+ + E + QE A+ A K R ++KR A
Sbjct: 464 --LKERIWIGINGDFLLEQESKRLKQEADMASGNASVKKRGGPRRKRKAASDADGVLADI 521
Query: 481 ------------AKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
A+++G TA + + M+ K S KINY+ ++ LF S
Sbjct: 522 KDDSGLHAALKLAEDTGDFTTA-DNVKNMIQKSSFSKKINYNAIDGLFGSS 571
>gi|348536305|ref|XP_003455637.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Oreochromis niloticus]
Length = 700
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 154/309 (49%), Gaps = 51/309 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT------------IQSEYGA-SRER 69
C CG VLED+ +E FV+ + G S G FV + G SR +
Sbjct: 25 CTSCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPIKAPLLGSGFHTSVGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ ++Q+ + L + + + A F+ + V+++ T+GR+TE V A+CLYL CR
Sbjct: 85 TLQNGKRQIQQLGSQLQLNQ--HCLDTAFNFFKLVVSKHLTRGRKTEHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFG 197
Query: 190 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARK 248
+V TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + S D+I
Sbjct: 198 AKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRSVKDVI------- 250
Query: 249 KELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
GV KV + + + L + +DT P + + +EFM + LE
Sbjct: 251 -----GVV--------KVCQTTLRKRLTEFEDT--PTS----QLTIDEFMRVD--LEQEC 289
Query: 307 DPPAFQVAE 315
DPP+F A+
Sbjct: 290 DPPSFTAAQ 298
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 73/171 (42%), Gaps = 42/171 (24%)
Query: 348 PEPESIGVPKNCTTQTASNEGE---GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 404
P S+ + + T S GE GDH ++ +D IDD E+D Y+
Sbjct: 429 PSAASLSLQQTFQTSDTSESGEKDLGDHPQSEELD-----------LEGIDDQEIDKYIL 477
Query: 405 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 464
NE+E K +W + N EYL+EQ K+ E + +E
Sbjct: 478 NEKEVQVKTELWMKQNAEYLKEQKEKQ------------------ERINKEKEEGTYKEK 519
Query: 465 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KS+K Q + A TA EA RML KK++SSKINYDVL L
Sbjct: 520 KKKKSKKRDQIE----------ALTAGEAIERMLEKKKISSKINYDVLRDL 560
>gi|323337428|gb|EGA78678.1| Brf1p [Saccharomyces cerevisiae Vin13]
Length = 584
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 430
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESK 501
>gi|6321685|ref|NP_011762.1| Brf1p [Saccharomyces cerevisiae S288c]
gi|135646|sp|P29056.1|TF3B_YEAST RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|172897|gb|AAB04945.1| transcription factor III B component [Saccharomyces cerevisiae]
gi|172905|gb|AAA35148.1| transcription factor IIIB [Saccharomyces cerevisiae]
gi|258516|gb|AAB23865.1| RNA polymerase III transcription factor 4, PCF4, pol III
transcription initiation factor 4=TFIIB homolog
[Saccharomyces cerevisiae, Peptide, 596 aa]
gi|1323446|emb|CAA97275.1| BRF1 [Saccharomyces cerevisiae]
gi|1702956|emb|CAA68968.1| BRF1 [Saccharomyces cerevisiae]
gi|285812437|tpg|DAA08337.1| TPA: Brf1p [Saccharomyces cerevisiae S288c]
gi|392299501|gb|EIW10595.1| Brf1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 596
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 437
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 438 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 492
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 493 ATRRMLTKKRLSSKINYDVLEKLF 516
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|156845831|ref|XP_001645805.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
gi|156116473|gb|EDO17947.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 577
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 138/235 (58%), Gaps = 17/235 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA--------SR 67
++ L C CG V ED+ +E TF ++++G + + G+F+ Q+ +G+ SR
Sbjct: 21 NNDLVCTGCGMVSEDNPIVSEVTFGESSSGAAVVQGSFISGDQAHAAFGSHGGSSALESR 80
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E + A +R + +AL I E I A ++Y +A+ +NF +GRR++ V ASCLY+AC
Sbjct: 81 ETTINNARRKLRAVSHALGIPEY--ITDAAHQWYKLALHQNFVQGRRSQNVIASCLYIAC 138
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L
Sbjct: 139 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITN----LPLADPSLFIQHFAEKLD 194
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K KV A + M +DW+ GR+P+G+ GA + ++ + L+ + S+I+
Sbjct: 195 LGDKKIKVVKDAVKLAQRMSKDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIV 249
>gi|365765493|gb|EHN07001.1| Brf1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 596
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 430
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 431 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 485
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|167516968|ref|XP_001742825.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779449|gb|EDQ93063.1| predicted protein [Monosiga brevicollis MX1]
Length = 285
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 149/314 (47%), Gaps = 39/314 (12%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQL-----SGNFVRT 58
C SC C CG ++ED+ +E TF ++ + G F
Sbjct: 5 CHSCGSSSVEEDESRGTTTCTVCGAIIEDNLIVSEVTFTEDRGVVERFVDADGRGAFNSG 64
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
Y SR+ + ++Q+ N + + + +A +Y AV FT+GR E V
Sbjct: 65 AYGGYRDSRQTTIANGRALIQQLANKMQMNSHH--IDMAVNYYKQAVEHRFTQGRPKEHV 122
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+CLY+ CRQ+ +L+DFS+ L +NVY+L A Y+QLC L + L VDP ++
Sbjct: 123 VAACLYIVCRQQKTSHMLLDFSDQLRVNVYKLAATYMQLCNKLLTS-----LPVVDPVLY 177
Query: 179 LHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+ +F + G +V TA I++ MKRDWI GR+PSG+CGAAL ++A HG + +
Sbjct: 178 IPRFAHHMRFGELTHEVSKTALRIVSRMKRDWIHVGRRPSGVCGAALLLAARMHGFQRNL 237
Query: 238 SDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT 297
D+ ++ +H G+ V + +D G + L E+F T
Sbjct: 238 QDV-------QQAVHVGI--------------QTVRARLEDFGNTESSKLTP---EQFQT 273
Query: 298 ISEGLEGGADPPAF 311
I G G A+PPAF
Sbjct: 274 IELG--GEAEPPAF 285
>gi|254580311|ref|XP_002496141.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
gi|238939032|emb|CAR27208.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
Length = 588
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 143/257 (55%), Gaps = 25/257 (9%)
Query: 1 MVWCSSC-----ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNF 55
M+ C +C + VT ++ L C CG V ED+ +E TF +N++G + + G++
Sbjct: 1 MLTCKNCKSTDFVKDVTN---ANNDLVCQSCGTVAEDNPIVSEVTFGENSSGAAVVQGSY 57
Query: 56 VRTIQS-----EYGAS-----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV 105
+ QS +G S R+ + A+ +R + ALNI E I A ++Y +A+
Sbjct: 58 IGKGQSGASMSAHGGSSALESRQVTLNNAYRKLRAVSFALNIPEY--ITDAAHQWYKLAL 115
Query: 106 ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD 165
NF +GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L I
Sbjct: 116 HYNFVQGRRSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLRMVKRLNITK 175
Query: 166 ESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
L DPS+F+ F ++L G K KV A + M RDW+ GR+P+G+ GA +
Sbjct: 176 ----LPLADPSLFIQHFAEKLDLGDKKIKVAKDAVKLAQRMSRDWMYEGRRPAGIAGACV 231
Query: 225 YVSALTHGLKFSKSDII 241
++ + L+ + S+I+
Sbjct: 232 LLACRMNNLRRTHSEIV 248
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 437
++ SD ++N D+DD E++ L +EE K+ IW +N EYL EQ +K EA AA
Sbjct: 450 SKVSDDAENLDDVDDDELESQLLDEEASKLKERIWIGINGEYLLEQESKRLKLEADIAAG 509
Query: 438 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 497
+ + N + ++ A + + A+ G TA ++ + M
Sbjct: 510 NTSSKRKRGNRRRKRKTEMDVDQAISTMSSIDDPTSLHSALQAAEQKGDFSTA-DSVKNM 568
Query: 498 LTKKRLSSKINYDVLEKLF 516
L K S KINYD ++ LF
Sbjct: 569 LQKASFSKKINYDAIDGLF 587
>gi|151943520|gb|EDN61831.1| transcription factor TFIIIB subunit [Saccharomyces cerevisiae
YJM789]
gi|256272646|gb|EEU07623.1| Brf1p [Saccharomyces cerevisiae JAY291]
gi|259146747|emb|CAY80004.1| Brf1p [Saccharomyces cerevisiae EC1118]
gi|323354892|gb|EGA86725.1| Brf1p [Saccharomyces cerevisiae VL3]
Length = 596
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 430
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 431 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 485
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|207344925|gb|EDZ71907.1| YGR246Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 596
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 430
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 431 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 485
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|323348488|gb|EGA82733.1| Brf1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 596
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 430
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 431 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 485
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|190406748|gb|EDV10015.1| RNA polymerase III transcription factor [Saccharomyces cerevisiae
RM11-1a]
Length = 596
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 430
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 431 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 485
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|323308921|gb|EGA62153.1| Brf1p [Saccharomyces cerevisiae FostersO]
Length = 523
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 430
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 431 EAAAAAAKAALE 442
EA A ++E
Sbjct: 506 EADIATGNTSVE 517
>gi|118092254|ref|XP_421405.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Gallus gallus]
Length = 681
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 126/233 (54%), Gaps = 21/233 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + A SR +
Sbjct: 26 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHANLGKESRAQ 85
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 86 TLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRT 143
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 144 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFG 198
Query: 190 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 199 DKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 251
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 449 DGELDLSGIDDSEIDRYILNETEAQIKAELWMKENADYLKEQKEKEARIAKEK------- 501
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 505
EL KE + K+AA+ + A TA EA +ML +K++SS
Sbjct: 502 -----------ELGIY---------KEHKPKKAAKKREPIQASTAGEAIEKMLEQKKISS 541
Query: 506 KINYDVLEKL 515
KINY+VL L
Sbjct: 542 KINYNVLRDL 551
>gi|323304747|gb|EGA58507.1| Brf1p [Saccharomyces cerevisiae FostersB]
Length = 523
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 435 AAAKAALEASYK 446
A A S K
Sbjct: 506 EADIATGNTSVK 517
>gi|349578449|dbj|GAA23615.1| K7_Brf1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 596
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 376 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 430
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 431 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 485
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRNDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|170109264|ref|XP_001885839.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639110|gb|EDR03383.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 477
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 136/253 (53%), Gaps = 22/253 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------R 57
C+ C V + C +CG V+E++ E F + + G + + G+FV
Sbjct: 1 CNDCGGTVIEYDHAAGNGFCIKCGTVVEENAIVNEVAFGETSNGAAMVQGSFVGQGATHA 60
Query: 58 TIQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
I YG SRE+ + ++ + N L + E + A R Y +AV FTKG
Sbjct: 61 RISGPYGNRGNNESREQTIANGAKKIQSIANILRLSEV--VCLAATRMYTLAVEHKFTKG 118
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 119 RKSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR-----LP 173
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 174 LVDPSHYISRFAA-LLEFGDETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 232
Query: 230 THGLKFSKSDIIE 242
+ + S +I++
Sbjct: 233 MNNFRRSVEEIVQ 245
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D +D+ E+D ++ +E+E K+ +W E+N+EYLE A K + S+ C
Sbjct: 374 DELLGLDEAELDRFILSEDEVRVKERVWVELNKEYLEALAGKSFSEC-------QSFPLC 426
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 507
+GL RK + R A G T E+ R +L K + S +I
Sbjct: 427 LQGLS---------------RRKGNNKPRDASTAAGG---TTAESVRNLLKKNPKYSKRI 468
Query: 508 NYDVLEKLF 516
NYD L+ LF
Sbjct: 469 NYDALKDLF 477
>gi|401841983|gb|EJT44282.1| BRF1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 597
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 136/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF +++AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGESSAGAAVVQGSFIGAGQSHASFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++++
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEVV 245
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 437
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 454 SKVSDDPDNLGDVDDEELNAHLLNEEASKLKERIWVGLNADFLLEQESKRLKQEADIATG 513
Query: 438 KAAL---EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 492
++ +N + + + AAAA + ++K AA A+ +G TA +
Sbjct: 514 NTSVKKKRTRRRNNTRNNEPTKSVDAAAAIGLMSDLQDKSGLHAALKAAEENGDFTTA-D 572
Query: 493 ATRRMLTKKRLSSKINYDVLEKLF 516
+ + ML K S KINYD ++ LF
Sbjct: 573 SVKNMLQKASFSKKINYDAIDGLF 596
>gi|402221210|gb|EJU01279.1| hypothetical protein DACRYDRAFT_107836 [Dacryopinax sp. DJM-731
SS1]
Length = 738
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 133/235 (56%), Gaps = 24/235 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERL------------ 70
C CG V E++ E TF + + G + + G+ V GA+R ++
Sbjct: 39 CLTCGCVTEENTIVAEVTFGETSGGAAIVQGSHVAA-----GATRAKINAPWGRQGNFES 93
Query: 71 MEKAFDDMRQMKNAL--NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
ME+A RQ+ L ++G ++ ++ A+R++ +A FTKGRR+ V +C Y+A R
Sbjct: 94 MEQAKHKARQILQGLKRHLGITETVIGYAERWWILAYEMGFTKGRRSLLVIGACCYIAVR 153
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +P +LID S+ L NV++LG VYLQL Q+L + + L VDP ++ +F+ L
Sbjct: 154 QHQRPIMLIDLSDLLQANVFDLGNVYLQLVQLLPVKN----LDLVDPEFYIERFSKLLEF 209
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G ++ K+ D A I+ KRDW+ TGR+PSG+CGAAL ++A + + S +I++
Sbjct: 210 GEDREKIRDDAVRIVHRFKRDWLYTGRRPSGICGAALLLAARMNNYRRSVLEIVQ 264
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
DG + D+D+ E+D Y+ + E K+ +W E+NR+YLE+ AA+EA A +
Sbjct: 541 DGEEEI-DLDEAELDDYILTDAEVEAKERVWVELNRQYLEKCAAREAVAQGEEEPAPKKR 599
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL---EATRRMLTKKR 502
K+ S K + ++ + + PA++A+ T R + +
Sbjct: 600 KH---------------------SNKRTGPRDSSNPRGATPAESAMALITGTYRKKGEPQ 638
Query: 503 LSSK-INYDVLEKLFDDSVCL 522
+ SK INYD LE+LF+ + L
Sbjct: 639 VRSKRINYDALEQLFNRPLKL 659
>gi|323333395|gb|EGA74791.1| Brf1p [Saccharomyces cerevisiae AWRI796]
Length = 404
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
>gi|389585362|dbj|GAB68093.1| transcription factor IIIb subunit [Plasmodium cynomolgi strain B]
Length = 820
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 140/252 (55%), Gaps = 16/252 (6%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----- 56
+ C +C ++ C RCG VLE++ FV+N G + G FV
Sbjct: 6 IVCKNCYSTDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFVPASGN 65
Query: 57 RTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
++ +G SRE ++K + +++++ + L++ S + V A+R Y +A+ RNFT GR
Sbjct: 66 KSFILSWGVRESRELSLQKGYINIQKIADHLHL--STQHVEAAQRIYLMALQRNFTMGRN 123
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+++ + +D
Sbjct: 124 NSYVAASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHLS-----VPNID 178
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS++L +F +L L KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+
Sbjct: 179 PSLYLERFAHKLNLKNAIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGI 238
Query: 234 KFSKSDIIEDFM 245
F S+ I + +
Sbjct: 239 -FVHSNTIANIV 249
>gi|159127363|gb|EDP52478.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus A1163]
Length = 749
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 67 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTHVRSYGPGFQRGGAME 126
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 127 SREITEQNGTRYINQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 184
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L +NV++LG Y L L + ++ +DP +++F
Sbjct: 185 ACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 244
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 245 QLEFGTATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 295
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
DD EV L + E K+ IW N++YL Q AK A A+A + G++
Sbjct: 499 DDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAEA-------DSQPGMRK 551
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
++ V + + + S PA EATRRML ++ S KINY +LE
Sbjct: 552 PRKRRRGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGFSKKINYRLLES 607
Query: 515 LFDD 518
LF D
Sbjct: 608 LFGD 611
>gi|119491136|ref|XP_001263190.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
gi|119411350|gb|EAW21293.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
Length = 752
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 74 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTHVRSYGPGFQRGGAME 133
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 134 SREITEQNGTRYINQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 191
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L +NV++LG Y L L + ++ +DP +++F
Sbjct: 192 ACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 251
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 252 QLEFGTATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 302
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
DD EV L + E K+ IW N++YL Q AK A A+A + G++
Sbjct: 506 DDPEVANCLLSSAEVEIKERIWVHENKDYLRTQQAKALKRALAEA-------DSQPGMRK 558
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
++ V + + S PA EATRRML ++ S KINY +LE
Sbjct: 559 PRKRRRGRLGDVTYLEGDGDDADGRSTRASTPA----EATRRMLERRGFSKKINYRLLES 614
Query: 515 LFDD 518
LF D
Sbjct: 615 LFGD 618
>gi|317027053|ref|XP_001400004.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus niger
CBS 513.88]
Length = 742
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------S 66
D Q C CG V+ + N +E TF ++++G + + G FV QS YG S
Sbjct: 73 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSYGPGFQRGGAES 132
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE + + Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+A
Sbjct: 133 REITEQNGNRYITQLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIA 190
Query: 127 CR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +
Sbjct: 191 CRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQ 250
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 251 LEFGSATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 300
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 388 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 441
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 539
Query: 442 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 491
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 587
Query: 492 EATRRMLTKKRLSSKINYDVLEKLFDD 518
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|317137549|ref|XP_001727802.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
oryzae RIB40]
Length = 745
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 74 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTHVRSYGPGFQRGGGAE 133
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 134 SREITEQNGNRYINQLARALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 191
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L + L + ++ +DP +++F
Sbjct: 192 ACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAK 251
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 252 QLEFGAATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 302
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L + E K+ IW N++YL Q AK A K ALE + + G+
Sbjct: 510 DPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRALEEA--DSQPGMHKP 562
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
++ V + + + + S PA EATRRML ++ S KINY +LE L
Sbjct: 563 RKRRRGRLGDVTYLQGDGEDGDGRSTRASTPA----EATRRMLERRGFSKKINYRLLESL 618
Query: 516 FDD 518
F +
Sbjct: 619 FGE 621
>gi|389742730|gb|EIM83916.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 687
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 137/256 (53%), Gaps = 22/256 (8%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-- 58
M C+ C V + C +CG V+E++ E +F + + G + + G FV
Sbjct: 1 MPVCTDCGGTVIEYDAAAGNGFCVQCGTVIEENTIVNEVSFGETSTGAAMVQGAFVGQGA 60
Query: 59 ----IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
+ +G SRE+ + A + Q+ + L++ E+ + A R Y +AV F
Sbjct: 61 THARMGGPFGNRGNSESREQTIANANRRISQIASNLHLSET--VSMSASRLYSLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR+ V A CLY+ACRQK ++ +LIDFS+ L +NV+ELG YLQL Q L +
Sbjct: 119 TKGRKAMNVVAVCLYVACRQKGTRSLMLIDFSDLLQVNVFELGHTYLQLVQTLNLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F LL G++ +V A ++ RDW+T GR+P+G+CGA L +
Sbjct: 175 -LPLVDPSHYISRFA-ALLEFGDETSRVATDAVRLVQRFDRDWMTKGRRPAGICGACLLL 232
Query: 227 SALTHGLKFSKSDIIE 242
+A + + S +I++
Sbjct: 233 AARMNNFRRSIEEIVQ 248
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D +D+ E+D +L +EE K+ +W EMN+EYLE A K
Sbjct: 521 DELLGLDEDELDKFLLTDEEVKIKERVWVEMNKEYLEAIALK------------------ 562
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
A++ + + K RK + R A + TA E+ R +L + + S +IN
Sbjct: 563 ------AEQRDNGSTSKPRKKRKTNSKPRDASTPH---GNTAAESVRSLLKQPKYSKRIN 613
Query: 509 YDVLEKLF 516
Y+ L+ LF
Sbjct: 614 YNALKDLF 621
>gi|83770830|dbj|BAE60963.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870227|gb|EIT79413.1| transcription initiation factor TFIIIB, Brf1 subunit [Aspergillus
oryzae 3.042]
Length = 734
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 52 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTHVRSYGPGFQRGGGAE 111
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 112 SREITEQNGNRYINQLARALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 169
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L + L + ++ +DP +++F
Sbjct: 170 ACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAK 229
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 230 QLEFGAATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 280
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L + E K+ IW N++YL Q AK A K ALE + + G+
Sbjct: 488 DPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRALEEA--DSQPGMHKP 540
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
++ V + + + + S PA EATRRML ++ S KINY +LE L
Sbjct: 541 RKRRRGRLGDVTYLQGDGEDGDGRSTRASTPA----EATRRMLERRGFSKKINYRLLESL 596
Query: 516 FDD 518
F +
Sbjct: 597 FGE 599
>gi|70999253|ref|XP_754348.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
fumigatus Af293]
gi|66851985|gb|EAL92310.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus Af293]
Length = 748
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 67 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTHVRSYGPGFQRGGAME 126
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 127 SREITEQNGTRYINQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 184
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L +NV++LG Y L L + ++ +DP +++F
Sbjct: 185 ACRRQDGNTVMLIDFADALMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 244
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 245 QLEFGTATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 295
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
DD EV L + E K+ IW N++YL Q AK A A+A + G++
Sbjct: 499 DDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAEA-------DSQPGMRK 551
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
++ V + + + S PA EATRRML ++ S KINY +LE
Sbjct: 552 PRKRRRGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGFSKKINYRLLES 607
Query: 515 LFDD 518
LF D
Sbjct: 608 LFGD 611
>gi|134056932|emb|CAK44279.1| unnamed protein product [Aspergillus niger]
Length = 752
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------S 66
D Q C CG V+ + N +E TF ++++G + + G FV QS YG S
Sbjct: 73 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSYGPGFQRGGAES 132
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE + + Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+A
Sbjct: 133 REITEQNGNRYITQLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIA 190
Query: 127 CR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +
Sbjct: 191 CRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQ 250
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 251 LEFGSATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 300
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 388 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 441
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 539
Query: 442 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 491
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 587
Query: 492 EATRRMLTKKRLSSKINYDVLEKLFDD 518
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|350634822|gb|EHA23184.1| hypothetical protein ASPNIDRAFT_52343 [Aspergillus niger ATCC 1015]
Length = 745
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------S 66
D Q C CG V+ + N +E TF ++++G + + G FV QS YG S
Sbjct: 66 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSYGPGFQRGGAES 125
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE + + Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+A
Sbjct: 126 REITEQNGNRYITQLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIA 183
Query: 127 CR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +
Sbjct: 184 CRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQ 243
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 244 LEFGSATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 293
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 388 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 441
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 479 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 532
Query: 442 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 491
A + A V K RK ++ + E ++ S A T
Sbjct: 533 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 580
Query: 492 EATRRMLTKKRLSSKINYDVLEKLFDD 518
EATRRML ++ S KINY +LE LF D
Sbjct: 581 EATRRMLERRGFSKKINYRLLESLFGD 607
>gi|385304224|gb|EIF48251.1| brf1p [Dekkera bruxellensis AWRI1499]
Length = 420
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 136/232 (58%), Gaps = 15/232 (6%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERL 70
S L C +CG VLE++ +E TF + + G + + G+FV + Q+ +G SRE+
Sbjct: 28 SDLACTKCGTVLEENPIVSEVTFAETSNGGAMIQGSFVGSDQAHANFGNNRGSLDSREQT 87
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ ++ + +AL I D I A +++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 88 LANGRKRIKNVASALGI--QDYISDAAYQWFQLALTNNFVQGRRSQNVVAACLYIACRKE 145
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
+LIDFS+ L ++V+ +GA +L++ + L+I D L +DPS+F+ F D+L G
Sbjct: 146 KTHHMLIDFSSRLQVSVFAVGATFLKMVKALHITD----LPLIDPSLFIQHFADKLDFGR 201
Query: 191 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
K KV + A + M +W+ GR+PSG+ GA + ++A + + S+I+
Sbjct: 202 AKLKVINDALKLARRMDDNWLYEGRRPSGIAGACILLAARMNNFHRTHSEIV 253
>gi|336369209|gb|EGN97551.1| hypothetical protein SERLA73DRAFT_75218 [Serpula lacrymans var.
lacrymans S7.3]
Length = 785
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 23/253 (9%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C+ C V + C +CG V+E++ +E TF + +AG + + G++V
Sbjct: 144 CTDCGGTVIEYDAAAGNGFCVKCGTVVEENTIVSEVTFGETSAGAAMVQGSYVGQGSTHA 203
Query: 59 -IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ +G SRE+ + ++ AL + E + A R Y +AV FTKG
Sbjct: 204 RMNGPFGNRGSSESREQTIANG-KKIQSFAAALRLSEV--VSLAATRLYTLAVEHKFTKG 260
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 261 RKSLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLK-----LP 315
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G + KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 316 LVDPSHYISRFA-ALLEFGEETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 374
Query: 230 THGLKFSKSDIIE 242
+ + S +I++
Sbjct: 375 MNNFRRSVEEIVQ 387
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 27/131 (20%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D +D+ E+D +L +EE K+ +W E+NREYLE AAK
Sbjct: 599 DELQGLDEEELDRFLLTDEEVRIKERVWVELNREYLEAIAAK------------------ 640
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 507
G Q QE + +KSRK K+ ++ TA E+ R ++ K + S +I
Sbjct: 641 --GEQ--QETGTSN----SKSRKRKKTNNKPRDASTPSGSTAAESVRNLIKKNPKYSKRI 692
Query: 508 NYDVLEKLFDD 518
NYD L+ LF D
Sbjct: 693 NYDALKDLFMD 703
>gi|403215833|emb|CCK70331.1| hypothetical protein KNAG_0E00630 [Kazachstania naganishii CBS
8797]
Length = 635
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 141/254 (55%), Gaps = 19/254 (7%)
Query: 1 MVWCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
M C +C + V ++ L C CG V ED+ +E TF + ++G + + G+F+
Sbjct: 1 MPVCKNCKKTEFVRDLSNANNDLVCQNCGVVSEDNPIVSEVTFGETSSGAAMVQGSFISA 60
Query: 59 IQSE-----YGAS-----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
QS +G S RE + A +R + +AL+I D I A ++Y +A++ N
Sbjct: 61 GQSHASFMSHGGSSALDSREATLNNARRKLRAVSHALSI--PDYITDAAFQWYKLALSYN 118
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
F +GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L+I
Sbjct: 119 FVQGRRSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITK--- 175
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L DPS+F+ F ++L G K KV A + M DW+ GR+P+G+ GA + ++
Sbjct: 176 -LPMADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQRMSDDWMFEGRRPAGIAGACVLLA 234
Query: 228 ALTHGLKFSKSDII 241
+ L+ + ++I+
Sbjct: 235 CRMNNLRRTHTEIV 248
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D ++ +D+DD E++ L +EE K+ IW +N EYL EQ K A A S
Sbjct: 496 DDEEDLADVDDEEIETLLLDEEAASLKERIWVGINEEYLLEQEEKRLKEEADMIAGNTST 555
Query: 446 KNCPEGLQAAQ--------ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 497
K G + + + ++ A A RK + Q+ A+ SG A TA ++ + M
Sbjct: 556 KRKRNGTKGRKRKLVKIEVDTTSSVGAMDALIRKSEMQEALKLAEESGDA-TAADSVKNM 614
Query: 498 LTKKRLSSKINYDVLEKLF 516
L K S KINY+ ++ LF
Sbjct: 615 LQKASFSKKINYNAIDNLF 633
>gi|115530760|emb|CAL49303.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 461
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 177/365 (48%), Gaps = 44/365 (12%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS----------RERLME 72
C CG VLED+ +E FV+ A G S G FV + S S +E +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVEGAGGISSAVGQFVSSECSGKTPSLGEGFYTSVGKESRAQ 84
Query: 73 KAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR +
Sbjct: 85 TLQNGKRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEG 144
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 145 TPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDK 199
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
N +V TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + ++I R +
Sbjct: 200 NHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVI-----RVVK 254
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPA 310
+ E S + + L + +DT P + + +EFM I LE DPP+
Sbjct: 255 VCE-------------STLRKRLTEFEDT--PTS----QLTIDEFMKID--LEQECDPPS 293
Query: 311 FQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEG 370
F +R+ ++ +E + E + S D++++ S PK A N G
Sbjct: 294 FTAGQRKVKIQQLEQELAKKLDEVEGEISSYQDEIENELESSRPKPKGIYASYAKN-GSE 352
Query: 371 DHTKT 375
D+T +
Sbjct: 353 DNTSS 357
>gi|348554702|ref|XP_003463164.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Cavia porcellus]
Length = 677
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 156/315 (49%), Gaps = 51/315 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGPGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV ++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFIFFKMAVNKSLTRGRKMTHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARK 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 198 EKNHEVSMTALRLLQCMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTV 246
Query: 249 KELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
KE+ V KV S + + L + +DT P + + +EFM I LEG
Sbjct: 247 KEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEGEC 289
Query: 307 DPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 290 DPPSYTAGQRKLRMK 304
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 31/157 (19%)
Query: 363 TASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEE 418
TA++ G D + +P D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 417 TAASLGISDSIRECISSPNRDPKDASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMR 476
Query: 419 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 478
N EYL EQ KEA A K EL KE + K++
Sbjct: 477 ENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPKKS 509
Query: 479 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
+ + A TA EA +ML +K++SSKINY VL L
Sbjct: 510 CKRREPIQASTAREAIEKMLEQKKISSKINYSVLRDL 546
>gi|307344666|ref|NP_001182550.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 665
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 177/365 (48%), Gaps = 44/365 (12%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS----------RERLME 72
C CG VLED+ +E FV+ A G S G FV + S S +E +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVEGAGGISSAVGQFVSSECSGKTPSLGEGFYTSVGKESRAQ 84
Query: 73 KAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR +
Sbjct: 85 TLQNGKRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEG 144
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 145 TPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDK 199
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
N +V TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + ++I R +
Sbjct: 200 NHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVI-----RVVK 254
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPA 310
+ E S + + L + +DT P + + +EFM I LE DPP+
Sbjct: 255 VCE-------------STLRKRLTEFEDT--PTS----QLTIDEFMKID--LEQECDPPS 293
Query: 311 FQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEG 370
F +R+ ++ +E + E + S D++++ S PK A N G
Sbjct: 294 FTAGQRKVKIQQLEQELAKKLDEVEGEISSYQDEIENELESSRPKPKGIYASYAKN-GSE 352
Query: 371 DHTKT 375
D+T +
Sbjct: 353 DNTSS 357
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 75/170 (44%), Gaps = 41/170 (24%)
Query: 348 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEE 407
P S+G+ + A NE E + A DG + + IDD E+D Y+ NE+
Sbjct: 410 PTAASLGITDSIKECIAINEQE----------KSDNAGDGELDLNGIDDNEIDRYILNEK 459
Query: 408 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 467
E KK +W + N +YL EQ KEA A K EL
Sbjct: 460 EAEIKKEMWMKENEDYLREQKEKEARIAKEK------------------ELGIY------ 495
Query: 468 KSRKEKQQKRAAEAKNSGPAQ--TALEATRRMLTKKRLSSKINYDVLEKL 515
K+QK +K P Q TA EA +ML +K++SSKINYDVL L
Sbjct: 496 -----KEQKPRKPSKRRAPIQASTAGEAIEKMLEQKKISSKINYDVLRDL 540
>gi|326430273|gb|EGD75843.1| hypothetical protein PTSG_07961 [Salpingoeca sp. ATCC 50818]
Length = 543
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 154/313 (49%), Gaps = 60/313 (19%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGN---------FVRT-IQSEYGASRERLME 72
C CG VLED +E T+ ++++ Q G+ F R+ I + R+ +
Sbjct: 21 CTVCGTVLEDSIIVSEVTYTEDSSVVEQYVGSDGQIGGLRGFPRSSIVTAVNTGRQHIEN 80
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
A R MK LN G D V ++Y +A + FT GR +E V A CLY+ CR++
Sbjct: 81 MA----RNMK--LNQGHIDAAV----KYYRMAAQQKFTAGRPSEHVAACCLYIVCREERS 130
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
+L+DF+++L +NVY+L + +L L L I L +DP +FL +F +L G +
Sbjct: 131 MLMLLDFADFLRVNVYKLASTFLSLRLKLSI-----TLPVIDPVLFLPRFVMQLDLGDKQ 185
Query: 193 K-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA----R 247
+ TA I++ MKRDW+ GR+P+G+CGAAL ++A +G S+ D++
Sbjct: 186 HDIGRTAIRIVSRMKRDWLHVGRRPAGICGAALLLAARMYGFARSQKDVVHAVRVCSSTV 245
Query: 248 KKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGAD 307
+K L E A P+ R +EFM+I LEG AD
Sbjct: 246 RKRLDE--FAETPS--------------------------ARLTMDEFMSID--LEGEAD 275
Query: 308 PPAFQVAERERMV 320
PPAF+ ++ ER +
Sbjct: 276 PPAFKKSQEERQL 288
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 33/115 (28%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
++ N+EE K +IW + N++YLE QA K A N P+
Sbjct: 456 HILNDEEVKVKTVIWTQNNQDYLERQARKREEEA-----------NAPK----------- 493
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
K +K + Q R + K+ A A R+ T+++ SSKINYD L+ LF
Sbjct: 494 ------KPKKRRNQPRLPDHKHHRGA-----ARERLKTEEKKSSKINYDSLQSLF 537
>gi|213407030|ref|XP_002174286.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
gi|212002333|gb|EEB07993.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
Length = 508
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 128/243 (52%), Gaps = 15/243 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
CS+C C +CG V E + +E TF + + G + + G+ + Q+
Sbjct: 3 CSTCGSSSLESDQSSGNTYCVKCGTVCEQNVIVSEVTFGEASTGAAIVQGSLISQDQTHA 62
Query: 63 --YGASRE------RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
+G R+ R M + R A + +D V A R++ +A+ NF KGRR
Sbjct: 63 RTFGPYRKHNQLESREMTISNGRKRIAALARTLRLTDRHVEAAVRYFTLAINHNFIKGRR 122
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
++ V ASCLY+ CR +LIDFS+ L INV++LG+ +L+LC+VL I L +D
Sbjct: 123 SQYVVASCLYVECRMAKTSHMLIDFSDVLQINVFKLGSTFLKLCRVLRI-----TLPLLD 177
Query: 175 PSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PSI++ +F L G ++V A +++ M RDW+ GR+P+G+CGA L ++A +
Sbjct: 178 PSIYIGRFAAMLEFGSETQRVASDATRLVSRMNRDWMQIGRRPAGICGACLLIAARMNNF 237
Query: 234 KFS 236
+ S
Sbjct: 238 RRS 240
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 24/126 (19%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D +D E+D +L + E K +W E+N++YL +Q K L
Sbjct: 407 DFNDEEIDKFLLSSNEVEAKTRVWMELNKDYLADQERKR--------------------L 446
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 512
+A ++L K RK K + + E G A TA+E+ + M+ ++ S KINY+ L
Sbjct: 447 KAEEDLKRGIVRQPRKRRKYKPRDSSTE----GVASTAIESAKEMMQQRTFSKKINYEAL 502
Query: 513 EKLFDD 518
+ LF+D
Sbjct: 503 DHLFND 508
>gi|325090389|gb|EGC43699.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H88]
Length = 837
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 46/329 (13%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG------------- 64
D C CG V+ + N +E TF ++A+G + + G FV QS YG
Sbjct: 68 DGMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQS-YGRSFGPGFQRGGGM 126
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY
Sbjct: 127 ESREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 184
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
+ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 185 IACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFA 244
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + +++
Sbjct: 245 KQLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVY 304
Query: 243 DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 302
+ +H+ +NE K ++G ++F ++ L
Sbjct: 305 VVKVTELTIHQ--------------RLNEF--KATESGD--------LTVDQFRSVQ--L 338
Query: 303 EGGADPPAFQVAERERMVKASAEENSSFE 331
E DPPAF + +R+ +A ++N++ E
Sbjct: 339 ENAHDPPAF--TQGKRLKQAMKQKNATTE 365
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
A T EATRRML ++ S KINY +LE++++D
Sbjct: 603 ASTPAEATRRMLEQRGFSKKINYRLLEEMYED 634
>gi|240278695|gb|EER42201.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H143]
Length = 774
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 46/329 (13%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG------------- 64
D C CG V+ + N +E TF ++A+G + + G FV QS YG
Sbjct: 68 DGMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQS-YGRSFGPGFQRGGGM 126
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY
Sbjct: 127 ESREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 184
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
+ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 185 IACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFA 244
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + +++
Sbjct: 245 KQLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVY 304
Query: 243 DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 302
+ +H+ +NE K ++G ++F ++ L
Sbjct: 305 VVKVTELTIHQ--------------RLNEF--KATESGD--------LTVDQFRSVQ--L 338
Query: 303 EGGADPPAFQVAERERMVKASAEENSSFE 331
E DPPAF + +R+ +A ++N++ E
Sbjct: 339 ENAHDPPAF--TQGKRLKQAMKQKNATTE 365
>gi|45190394|ref|NP_984648.1| AEL213Wp [Ashbya gossypii ATCC 10895]
gi|44983290|gb|AAS52472.1| AEL213Wp [Ashbya gossypii ATCC 10895]
Length = 571
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 141/253 (55%), Gaps = 18/253 (7%)
Query: 1 MVWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
M C +C V ++ C CG V ED+ +E TF + ++G + + G+FV
Sbjct: 1 MAKCKNCGHTEIVVDLSNANNDRVCKACGVVSEDNPIVSEVTFGETSSGAAVVQGSFVAA 60
Query: 59 IQSE--YGA-------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
Q+ +G SRE + A ++ + +AL I E + A ++Y +A++ NF
Sbjct: 61 GQAHAAFGPHGTSALESREATLNNARRKLQAVSHALQIPEY--VREAAFQWYQLALSNNF 118
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
+GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ +VL+I
Sbjct: 119 VQGRRSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKVLHIVK---- 174
Query: 170 LKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
L DPS+F+ F ++L G K KV A + +M +DW+ GR+P+G+ GA L ++
Sbjct: 175 LPLADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQTMSKDWMYEGRRPAGIAGACLLLAC 234
Query: 229 LTHGLKFSKSDII 241
+ L+ + S+++
Sbjct: 235 RMNNLRRTHSEVV 247
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 437
++ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K EA A+
Sbjct: 436 SKVSDDPENLEDVDDEELEAHILDEEASKLKERIWIGINGEYLLEQESKRLKLEADLASG 495
Query: 438 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 497
+L+ + A+ L A AAA + Q AEA SG TA E+ + M
Sbjct: 496 NTSLKKKRSSKKRKTDASNLLPEALAAADPTGIQPALQ--VAEA--SGDLTTA-ESVKNM 550
Query: 498 LTKKRLSSKINYDVLEKLF 516
L K S KINYD ++ LF
Sbjct: 551 LQKTSFSKKINYDAIDGLF 569
>gi|225560369|gb|EEH08651.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus G186AR]
Length = 832
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 46/329 (13%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG------------- 64
D C CG V+ + N +E TF ++A+G + + G FV QS YG
Sbjct: 68 DGMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQS-YGRSFGPGFQRGGGM 126
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY
Sbjct: 127 ESREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 184
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
+ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 185 IACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFA 244
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + +++
Sbjct: 245 KQLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVY 304
Query: 243 DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 302
+ +H+ +NE K ++G ++F ++ L
Sbjct: 305 VVKVTELTIHQ--------------RLNEF--KATESGD--------LTVDQFRSVQ--L 338
Query: 303 EGGADPPAFQVAERERMVKASAEENSSFE 331
E DPPAF + +R+ +A ++N++ E
Sbjct: 339 ENAHDPPAF--TQGKRLKQAMKQKNATTE 365
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 487 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
A T EATRRML ++ S KINY +LE++++D
Sbjct: 603 ASTPAEATRRMLEQRGFSKKINYRLLEEMYED 634
>gi|374107864|gb|AEY96771.1| FAEL213Wp [Ashbya gossypii FDAG1]
Length = 571
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 141/253 (55%), Gaps = 18/253 (7%)
Query: 1 MVWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
M C +C V ++ C CG V ED+ +E TF + ++G + + G+FV
Sbjct: 1 MAKCKNCGHTEIVVDLSNANNDRVCKACGVVSEDNPIVSEVTFGETSSGAAVVQGSFVAA 60
Query: 59 IQSE--YGA-------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
Q+ +G SRE + A ++ + +AL I E + A ++Y +A++ NF
Sbjct: 61 GQAHAAFGPHGTSALESREATLNNARRKLQAVSHALQIPEY--VREAAFQWYQLALSNNF 118
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
+GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ +VL+I
Sbjct: 119 VQGRRSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKVLHIVK---- 174
Query: 170 LKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
L DPS+F+ F ++L G K KV A + +M +DW+ GR+P+G+ GA L ++
Sbjct: 175 LPLADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQTMSKDWMYEGRRPAGIAGACLLLAC 234
Query: 229 LTHGLKFSKSDII 241
+ L+ + S+++
Sbjct: 235 RMNNLRRTHSEVV 247
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 437
++ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K EA A+
Sbjct: 436 SKVSDDPENLEDVDDEELEAHILDEEASKLKERIWIGINGEYLLEQESKRLKLEADLASG 495
Query: 438 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 497
+L+ + A+ L A AAA + Q AEA SG TA E+ + M
Sbjct: 496 NTSLKKKRSSKKRKTDASNLLPEALAAADPTGIQPALQ--VAEA--SGDLTTA-ESVKNM 550
Query: 498 LTKKRLSSKINYDVLEKLF 516
L K S KINYD ++ LF
Sbjct: 551 LQKTSFSKKINYDAIDGLF 569
>gi|348554704|ref|XP_003463165.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Cavia porcellus]
Length = 650
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 149/303 (49%), Gaps = 54/303 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+N+ G S G FV + D R +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVENSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 N-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ + + + A F+ +AV ++ T+GR+ V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGSQLQLNQHCLDTAFIFFKMAVNKSLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLP 260
+L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 183 LLQCMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV----- 226
Query: 261 NNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 318
KV S + + L + +DT P + + +EFM I LEG DPP++ +R+
Sbjct: 227 ----KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEGECDPPSYTAGQRKL 274
Query: 319 MVK 321
+K
Sbjct: 275 RMK 277
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 31/157 (19%)
Query: 363 TASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEE 418
TA++ G D + +P D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 390 TAASLGISDSIRECISSPNRDPKDASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMR 449
Query: 419 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 478
N EYL EQ KEA A K EL KE + K++
Sbjct: 450 ENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPKKS 482
Query: 479 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
+ + A TA EA +ML +K++SSKINY VL L
Sbjct: 483 CKRREPIQASTAREAIEKMLEQKKISSKINYSVLRDL 519
>gi|115391595|ref|XP_001213302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194226|gb|EAU35926.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 756
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY----------GA-- 65
D Q C CG V+ + N +E TF ++++G + + G FV QS GA
Sbjct: 73 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSFGPGFQRGGAME 132
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 133 SREITEQNGSRYINQLSRALNVPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 190
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LID ++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 191 ACRRQDGNTVMLIDLADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 250
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G + +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 251 QLEFGPSTMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 301
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 378 VDATTEASDGSDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 431
+++T E + +DID D EV L + E K+ IW N++YL Q AK
Sbjct: 486 IESTVEPKKVVSDSADIDETEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAKA 545
Query: 432 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 491
A A+A + G+ ++ V E + + S PA
Sbjct: 546 LKRALAEA-------DSGPGMHKPRKRRRGRMGDVTYLEGEGEDGDGRSTRASTPA---- 594
Query: 492 EATRRMLTKKRLSSKINYDVLEKLFDD 518
EATRRML ++ S KINY +LE LF +
Sbjct: 595 EATRRMLERRGFSKKINYRLLESLFGE 621
>gi|238489759|ref|XP_002376117.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
gi|220698505|gb|EED54845.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
Length = 1098
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 122/225 (54%), Gaps = 16/225 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 74 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTHVRSYGPGFQRGGGAE 133
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 134 SREITEQNGNRYINQLARALNIPESAS--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 191
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L + L + ++ +DP +++F
Sbjct: 192 ACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAK 251
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A
Sbjct: 252 QLEFGAATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAA 296
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 46/224 (20%)
Query: 309 PAFQVAERERMVKASAEENSSFERESDSPFM--------SRVDKVQSPEPESIGVPKNCT 360
PA A+ ER + ++ E+ ++P S+ + +P P+ I +
Sbjct: 413 PALIAADGERRMSTTSVESEIAPEVGENPGKPARGRPKGSKARPLPTPTPDQIASEEALE 472
Query: 361 TQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID------DFEVDGYLHNEEEKHYKKI 414
+ + +G + +++TT ++ID D EV L + E K+
Sbjct: 473 NEMTAYLTKGSNM----IESTTVPRKAVSESAEIDEAEFESDPEVSNCLLSPAEVEIKER 528
Query: 415 IWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ 474
IW N++YL Q AK A K ALE A S+
Sbjct: 529 IWVHENKDYLRTQQAK-----ALKRALEE-----------------------ADSQPGMH 560
Query: 475 QKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
+ R S A T EATRRML ++ S KINY +LE LF +
Sbjct: 561 KPRKRRRGRSTRASTPAEATRRMLERRGFSKKINYRLLESLFGE 604
>gi|41054045|ref|NP_956183.1| transcription factor IIIB 90 kDa subunit [Danio rerio]
gi|38014698|gb|AAH60523.1| Zgc:63497 [Danio rerio]
Length = 693
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C +C P C CG VLED+ +E FV+N+ G S G FV S
Sbjct: 5 CKNCGGSDIDTDPARGSAVCTACGSVLEDNIIVSEVQFVENSGGVSSAVGQFV----SAD 60
Query: 64 GASRERLMEKAF--------------DDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARN 108
G S+ ++ F + RQ+ N + + + A F+ + V+++
Sbjct: 61 GTSKAPVLGSGFHTSLGKESRAQTLQNGKRQIHNLGSQLQLNQHCLDTAFNFFKMVVSKH 120
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 121 LTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPA- 179
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PSGLCGAAL V
Sbjct: 180 ----VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLV 234
Query: 227 SALTHGLKFSKSDII 241
+A H + + ++I
Sbjct: 235 AARMHEFRRTVKEVI 249
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 45/171 (26%)
Query: 348 PEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 404
P S+G+ + C T+T + E + D G + ID+ E++ Y+
Sbjct: 424 PSAASLGLTDSIRQCITETTNVEEKSD--------------SGELDLDGIDEEEIEKYIL 469
Query: 405 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 464
NE E K +W + N EYL EQ KE A K + +YK P+ +E A+
Sbjct: 470 NEIEVEAKTELWMKQNEEYLREQKEKEERIAKEKE--QGTYKEKPKKPSKKREPILAS-- 525
Query: 465 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
TA EA +ML +K++SSKINYDVL L
Sbjct: 526 ------------------------TAGEAIEKMLEQKKISSKINYDVLRDL 552
>gi|121706010|ref|XP_001271268.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
gi|119399414|gb|EAW09842.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
Length = 755
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 74 DGHKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGAFVGEDQTHVRSYGPGFQRGGAME 133
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 134 SREITEQNGNRYINQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 191
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L +NV++LG Y L L + ++ +DP +++F
Sbjct: 192 ACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 251
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 252 QLEFGTATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 302
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L + E K+ IW N+EYL Q AK A A+A + G++
Sbjct: 506 DPEVADCLLSPAEVEIKERIWVHENKEYLRIQQAKALKRALAEAESQP-------GMRKP 558
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
++ V + + + S PA EATRRML ++ S KINY +LE L
Sbjct: 559 RKRRKGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGFSKKINYRLLESL 614
Query: 516 FDD 518
F D
Sbjct: 615 FGD 617
>gi|70608137|ref|NP_082469.2| transcription factor IIIB 90 kDa subunit [Mus musculus]
gi|148686622|gb|EDL18569.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 156/315 (49%), Gaps = 51/315 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARK 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 198 EKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTV 246
Query: 249 KELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 247 KEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEEC 289
Query: 307 DPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 290 DPPSYTAGQRKLRMK 304
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 31/157 (19%)
Query: 363 TASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEE 418
TA++ G D + +P D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 416 TAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMR 475
Query: 419 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 478
N EYL EQ KEA A K EL KE + K++
Sbjct: 476 ENAEYLREQKEKEARIAKEK------------------ELGIY---------KEHKPKKS 508
Query: 479 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
+ + A TA EA +ML +K++SSKINY VL L
Sbjct: 509 CKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>gi|71153596|sp|Q8CFK2.1|TF3B_MOUSE RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=mTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1
gi|23512360|gb|AAH37224.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 156/315 (49%), Gaps = 51/315 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARK 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 198 EKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTV 246
Query: 249 KELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 247 KEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEEC 289
Query: 307 DPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 290 DPPSYTAGQRKLRMK 304
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 31/157 (19%)
Query: 363 TASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEE 418
TA++ G D + +P D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 416 TAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMR 475
Query: 419 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 478
N EYL EQ KEA A K EL KE + K++
Sbjct: 476 ENAEYLREQKEKEARIAKEK------------------ELGIY---------KEHKPKKS 508
Query: 479 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
+ + A TA EA +ML +K++SSKINY VL L
Sbjct: 509 CKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>gi|154276374|ref|XP_001539032.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414105|gb|EDN09470.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 818
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 163/329 (49%), Gaps = 46/329 (13%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG------------- 64
D C CG V+ + N +E TF ++A+G + + G FV QS YG
Sbjct: 68 DGMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQS-YGRSFGPGFQRGGGM 126
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY
Sbjct: 127 ESREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 184
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
+ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 185 IACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFA 244
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + +++
Sbjct: 245 KQLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVV- 303
Query: 243 DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 302
++ + EL +++ L + K T ++F ++ L
Sbjct: 304 -YVVKVTELT----------------IHQRLKEFKATES------GDLTVDQFRSVQ--L 338
Query: 303 EGGADPPAFQVAERERMVKASAEENSSFE 331
E DPPAF + +R+ +A ++N+S E
Sbjct: 339 ENAHDPPAF--TQGKRLKQAMKQKNASTE 365
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 489 TALEATRRMLTKKRLSSKINYDVLEKLFDD 518
T EATRRML ++ S KINY +LE++++D
Sbjct: 603 TPAEATRRMLEQRGFSKKINYRLLEEMYED 632
>gi|406603760|emb|CCH44785.1| Transcription factor IIIB subunit [Wickerhamomyces ciferrii]
Length = 559
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 27/257 (10%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG----------ASRE 68
S L C CG+V E++ +E TF +++ G + + G FV Q+ SR
Sbjct: 25 SDLACQNCGRVFEENPIVSEVTFGESSTGAATVQGAFVGADQAHAAFAGGPRGNSMDSRT 84
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ + A +R + AL I E + A +++ +A++ NF KGR+++ V A+CLY++CR
Sbjct: 85 KTLASAKRKIRAVATALKIPEY--VSDAAYQWFSLALSNNFVKGRKSQNVIAACLYISCR 142
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
++ +LIDFS L I+VY +GA +L++ + L+I L DPS+F+ F ++L
Sbjct: 143 KEKTHHMLIDFSARLQISVYSVGATFLKMVKALHITK----LPLADPSLFIQHFAEKLDF 198
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA------LTHGLKFSKSDII 241
G ++ K+ A + M DWI GR+P+G+ GA L ++A THG + + +
Sbjct: 199 GDDRVKIVKDAVKLAQRMSEDWIHEGRRPAGVAGACLLLAARMNNHRRTHGEIVAVAHVG 258
Query: 242 EDFMARK----KELHEG 254
ED + R+ KE H G
Sbjct: 259 EDTLQRRLNEFKETHAG 275
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 399 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 458
+D +L EEE K+ +W +N EYL EQ K A A E S P
Sbjct: 454 LDNFLLTEEESKLKERVWVGLNEEYLLEQEQKRLKAEAD----EISGHQQP--------- 500
Query: 459 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE----------ATRRMLTKKRLSSKIN 508
K RK+ K + N Q A+ A R +LTKK S KIN
Sbjct: 501 ---------KKRKKPNTKNEDDPLNDDNVQNAINKIGEGNSVSAAARSVLTKK-ASKKIN 550
Query: 509 YDVLEKLFD 517
Y L LF+
Sbjct: 551 YMALNNLFE 559
>gi|388583139|gb|EIM23442.1| BRF1-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 806
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 13/243 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C C H C CG V E+ N + F ++++GQ+ ++G V
Sbjct: 6 CRDCGSLNIDHDSSSGSSYCANCGIVFEESNIVADVGFTESSSGQAHVTGTLV--AHDAT 63
Query: 64 GASRE---RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
G SRE + +++ +RQ+ AL I E+ + +R Y +AV NF +GR+ + +
Sbjct: 64 GTSRESRDKTIQEGKRRVRQLAAALRISEA--VAESGERIYTLAVQNNFIRGRKAVYIVS 121
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY ACR + +LIDFS++L INV+ LG YL+L + L + L ++DPSI++
Sbjct: 122 ACLYAACRLQKDSHMLIDFSDFLQINVFALGTTYLRLVERLDLK-----LPEMDPSIYIQ 176
Query: 181 KFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F L G ++V A + D+I+ GR+P+G+CGAAL ++A + + S +
Sbjct: 177 RFASLLEFGQETQRVASDATRLCRRFDEDFISHGRRPAGICGAALLLAARMNNFRRSVEE 236
Query: 240 IIE 242
I++
Sbjct: 237 IVQ 239
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 32/128 (25%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D +D+ E+D + E+E K+ IW E N++YLE+ A +A
Sbjct: 658 DELQGLDESELDDMILGEDEVRVKERIWMEFNKDYLEKIALHQATG-------------- 703
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
Q Q+ S + A EA ++L ++++S KIN
Sbjct: 704 ----QDQQKKPRRKKRKAKDQ--------------SAKPENAAEAASQVLKQRKISKKIN 745
Query: 509 YDVLEKLF 516
Y+ L+ LF
Sbjct: 746 YNALDGLF 753
>gi|255721757|ref|XP_002545813.1| hypothetical protein CTRG_00594 [Candida tropicalis MYA-3404]
gi|240136302|gb|EER35855.1| hypothetical protein CTRG_00594 [Candida tropicalis MYA-3404]
Length = 553
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 136/546 (24%), Positives = 233/546 (42%), Gaps = 90/546 (16%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG---------ASRERLM 71
+CC RCG V E++ +E F ++++G + + G V Q+ SRE+ +
Sbjct: 29 VCCLRCGTVTEENPIVSEVQFGESSSGAAMVQGAMVGADQARATFAGGRQNAMESREQTI 88
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
++++ A+ I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++
Sbjct: 89 NTGKRRIKRIAAAMKI--PDYIADAAAEWFRLALTLNFVQGRRSHNVLATCLYVACRKER 146
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG 190
+LIDFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L
Sbjct: 147 THHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDK 202
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII-------ED 243
KV A + M DWI GR+P+G+ GA + ++A + + S ++I+ E
Sbjct: 203 ATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEET 262
Query: 244 FMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP------------FACGLCRSC 291
R E + A L + EV +H ++ P A L +
Sbjct: 263 LQRRLNEFKKTKAGQLS-----IKSFREV--EHLESSNPPSFEKNRAMELKIAKKLQQQQ 315
Query: 292 YEEFMTISEGLEGGADPPAFQVAERERMVKASAEEN--SSFERESDSPFMSRVDKVQSPE 349
+ F +++ E D + ++E + K S SD+ ++D++ +
Sbjct: 316 QDTFEGLTKITEANGDDIPLKKVDKEELQKQILLNTILSDITITSDT-LNEQMDRILKMK 374
Query: 350 PESIGVPKNCTTQTASNEGEGDHTKT-------------PGVDATTE--ASDGSDNFSDI 394
S+ T SN E D K P D E +S+ N D
Sbjct: 375 KTSLENSLYKTPYELSNSQESDLDKIWDMNRPRNLVKNLPKTDEILEKVSSEMELNSDDD 434
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
D+ ++ L EEE K+ IW +N +Y+ EQ K + +EA
Sbjct: 435 DEIVMESKL-TEEEIAIKERIWTGLNHDYMVEQEKK-------RLKMEAD---------- 476
Query: 455 AQELAAAAAAAVAKSRKEKQQKRA----------AEAKNSGPAQTALEATRRMLTKKRLS 504
EL + + +R++K + E G ++A ++ +R + K +S
Sbjct: 477 --ELTGNTSNSSGGNRRKKNKNSLPPELRKDFGDIELDEDGTPRSAADSAKRYIAKTSVS 534
Query: 505 SKINYD 510
KINYD
Sbjct: 535 KKINYD 540
>gi|150863862|ref|XP_001382483.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
gi|149385118|gb|ABN64454.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
Length = 570
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 15/230 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERLME 72
+ C RCG V+E++ +E F ++++G + + G V Q+ YG SRE+ +
Sbjct: 27 ISCLRCGTVMEENPIVSEVQFGESSSGAAMVQGAMVGADQARASYGGRQNAMESREQTLS 86
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+R++ +AL I +D I A ++ +A+ +NF +GRR++ V A+CLY+ACR++
Sbjct: 87 NGKRKIRKIAHALKI--ADYIAESAGGWFKLALTQNFVQGRRSQNVLAACLYVACRKERT 144
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
+LIDFS+ L I+VY LGA +L+L + L I L DPSIF+ F ++L
Sbjct: 145 HHMLIDFSSRLQISVYSLGATFLKLVKALNIVK----LPLADPSIFIQHFAEKLDFKEKA 200
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M DWI GR+P+G+ GA + ++A + + + S+I+
Sbjct: 201 TKVVKDAVKLAHQMSSDWIDAGRRPAGIAGACVLLAARMNNFRRTHSEIV 250
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAA 434
D + S ++ SD DD V EE K+ IW +N +++ Q K EA
Sbjct: 436 DILAKVSSSTELNSDDDDEVVLESELTPEEASIKERIWTGLNHDFMVAQERKRLKQEADE 495
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
+ K + QE A +V + +G A TA E+
Sbjct: 496 LTGNTSGTTRKKRARTAPEVVQEYGVKDALSVI-----------GVDERTGEALTAAESA 544
Query: 495 RRMLTKKRLSSKINYDVLEKLFDDSV 520
+ ML+KK S KINYD ++ LF +S+
Sbjct: 545 KIMLSKKSFSKKINYDRIDDLFSNSM 570
>gi|340372189|ref|XP_003384627.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Amphimedon queenslandica]
Length = 649
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 22/220 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQM 81
C CG VLE+ +E TF + ++G L G FV T S+ RL +
Sbjct: 28 VCVGCGVVLEEDIIVSELTFQEQSSGSLALVGQFVST------ESKRRLT--------HL 73
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ L + + + +A F+ +A+ N T+GR++ + +CLYL CR + P +L+DFS+
Sbjct: 74 GSQLKLNQ--HCIDMAFGFFKMALQLNLTRGRKSSIMDTACLYLVCRSEGTPHMLLDFSD 131
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARD 200
L INVY LG YL+L L+I + +DP +++H+F +L G V TA
Sbjct: 132 VLQINVYSLGRAYLRLSTALHINPPA-----LDPCLYIHRFAHKLELGDKVHDVSMTALR 186
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
++A MKRDWI GR+P+GLCGAAL V+A H S I
Sbjct: 187 LVARMKRDWIHHGRRPAGLCGAALLVAARLHNFNRSVKQI 226
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 390 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 449
+ IDD E++ L +EEE K +W N ++L+E + +K SY N
Sbjct: 385 DLEGIDDEEIEQMLLSEEEVKIKSQLWFAENGDFLKEMEGPQLLNYFSK-----SYMN-- 437
Query: 450 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 509
+ + LAA A K + + + PA TA EA RML +K+LSSKINY
Sbjct: 438 PTIARKERLAAVEAKKEGNKGKRTVHRPKKDRTHQSPAATAGEAIERMLVEKKLSSKINY 497
Query: 510 DVLEKL 515
DVL L
Sbjct: 498 DVLRDL 503
>gi|410916049|ref|XP_003971499.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 690
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 21/233 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT------------IQSEYGA-SRER 69
C CG VLED+ +E FV+ + G S G FV + G SR +
Sbjct: 25 CTDCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPVKAPLLGSGFHTSVGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ ++ + + L + + + A F+ + V+++ T+GR+TE V A+CLYL CR
Sbjct: 85 TLQGGKRQIQHLGSQLQLNQ--HCLDTAFNFFKMVVSKHLTRGRKTEHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+V TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + + D+I
Sbjct: 198 VKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRTVKDVI 250
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 55/126 (43%), Gaps = 28/126 (22%)
Query: 390 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 449
+ IDD E++ Y+ N++E K +W N EYL+EQ KE K + +YK
Sbjct: 457 DLDGIDDQEIEKYILNDKEVEVKTELWMRQNAEYLKEQKEKEERIQKEKE--QGTYK--- 511
Query: 450 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 509
+ + R E A TA EA ML KK++SSKINY
Sbjct: 512 ---------EKSKKPKKKRERME--------------ASTAGEAIEMMLEKKKISSKINY 548
Query: 510 DVLEKL 515
DVL L
Sbjct: 549 DVLRHL 554
>gi|367004042|ref|XP_003686754.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
gi|357525056|emb|CCE64320.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
Length = 602
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 135/235 (57%), Gaps = 17/235 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ-----SEYGAS-----R 67
++ L C CG V E++ +E TF + +AG + + G+F+ Q + +G S R
Sbjct: 21 NNDLVCVGCGTVSEENPIVSEVTFGETSAGAAVVQGSFISGDQAHAAFTSHGGSSAMESR 80
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E + A +R + +AL I D I A ++Y +A+ NF +GRR++ V A+CLY+AC
Sbjct: 81 EATLNNARRKLRAVSHALRI--QDYITDAAFQWYKLALHHNFVQGRRSQNVIAACLYVAC 138
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L
Sbjct: 139 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITN----LPLADPSLFIQHFAEKLD 194
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K KV A + M +DW+ GR+P+G+ GA + ++ + L+ + S+I+
Sbjct: 195 LGEKKIKVIKDAVKLAQRMSKDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIV 249
>gi|50302609|ref|XP_451240.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|52788254|sp|P46070.2|TF3B_KLULA RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|49640371|emb|CAH02828.1| KLLA0A05434p [Kluyveromyces lactis]
Length = 556
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 133/234 (56%), Gaps = 17/234 (7%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------TIQSEYG----ASRE 68
++L C CG V E+++ +E TF + + G + + G FV T S G SRE
Sbjct: 29 NELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQAHPTFMSHSGQNALMSRE 88
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ A ++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR
Sbjct: 89 TTLNNARRKLKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACR 146
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
++ +LIDFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L
Sbjct: 147 KERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLEL 202
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K KV A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+I+
Sbjct: 203 GDKKIKVIRDAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIV 256
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 441
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 442 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 501
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 502 RLSSKINYDVLEKLF 516
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>gi|619493|emb|CAA87399.1| TFIIB related subunit of TFIIIB (BRF1) [Kluyveromyces lactis]
Length = 556
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 142/566 (25%), Positives = 238/566 (42%), Gaps = 109/566 (19%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------TIQSEYG----ASRE 68
++L C CG V E+++ +E F + + G + + G FV T S G SRE
Sbjct: 29 NELICKVCGLVTEENSIVSELAFGEASNGAAVIQGAFVSANQAHPTFMSHSGQNALMSRE 88
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ A ++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR
Sbjct: 89 TTLNNARRKLKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACR 146
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
++ +LIDFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L
Sbjct: 147 KERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLEL 202
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII------ 241
G K KV A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+I+
Sbjct: 203 GDKKIKVIRDAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVA 262
Query: 242 -EDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISE 300
E R E +A L + ++ ++E
Sbjct: 263 EETLQQRLNEFKNTTSAKLS---------------------------VKEFRDDETEVNE 295
Query: 301 GLEGG-ADPPAFQVAE-RERMVKASAEEN----SSFERESDSPFMSRVDKVQSPEPESIG 354
G + PP+F +E+ +K S + +S E S +P +++V Q E S
Sbjct: 296 GERSAESKPPSFDKNRLKEKKIKDSLDTKEMLETSEEAVSRNPILTQVLGAQ--ELSSKE 353
Query: 355 VPKNCTTQTASNEGEGDHTK-TPGVDATTEASDGSDNFSDIDDFEVDGY----------- 402
V + + E H K T G+D D +D E+DGY
Sbjct: 354 VLYYLKKLSERRKAEFSHIKATHGIDGEDLHKTEKDKKRSLD--EIDGYSLEKDPYRPRN 411
Query: 403 LH--------------------------------NEEEKHYKKIIWEEMNREYLEEQAAK 430
LH +EE K+ IW ++N +YL EQ +K
Sbjct: 412 LHLLPTTASLLSKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESK 471
Query: 431 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 490
A A+ S + ++ + ++A++ K + + + A
Sbjct: 472 RLKQEADLASGNTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVA 527
Query: 491 LEATRRMLTKKRLSSKINYDVLEKLF 516
+ +L K S KINYD + LF
Sbjct: 528 AGGVKNLLQKTTFSKKINYDAINGLF 553
>gi|448527192|ref|XP_003869453.1| Brf1 component of the general transcription factor for RNA
polymerase III (TFIIIB) [Candida orthopsilosis Co
90-125]
gi|380353806|emb|CCG23318.1| Brf1 component of the general transcription factor for RNA
polymerase III (TFIIIB) [Candida orthopsilosis]
Length = 552
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 133/255 (52%), Gaps = 28/255 (10%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 11 CVNC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 65
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + +R++ AL I D I A ++ +A+
Sbjct: 66 GADQARATFAGGRQNAMESREQTITNGKRKIRRIAAALKI--PDFIAEAAGEWFKLALTM 123
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ P +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 124 NFVQGRRSNNVLATCLYVACRKEKTPHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 181
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 182 --LPLADPSLFIQHFVEKLDFKDKATKVARDATKLAQRMSADWIHEGRRPAGVAGACVLL 239
Query: 227 SALTHGLKFSKSDII 241
+A + + S S+I+
Sbjct: 240 AARMNNFRRSHSEIV 254
>gi|301787049|ref|XP_002928941.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Ailuropoda melanoleuca]
Length = 863
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 151/309 (48%), Gaps = 51/309 (16%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRERLMEKAF 75
VLED+ +E FV+N+ G S G FV T+ + SR + ++
Sbjct: 217 VLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGR 276
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +
Sbjct: 277 RQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHM 334
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 194
L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 335 LLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEV 389
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEG 254
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 390 SMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVV---------- 439
Query: 255 VAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ 312
KV S + + L + +DT + +EFM I LEG DPP++
Sbjct: 440 ----------KVCESTLRKRLTEFEDTPT------SQLTVDEFMKID--LEGECDPPSYT 481
Query: 313 VAERERMVK 321
+R+ +K
Sbjct: 482 AGQRKVRMK 490
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D DG + S IDD E+D Y+ NE E K +W N EYL+EQ KEA A K
Sbjct: 624 DPPDACGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLQEQREKEARIAKEK 683
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 684 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 716
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 717 EQKKISSKINYSVLRDL 733
>gi|354546095|emb|CCE42824.1| hypothetical protein CPAR2_204670 [Candida parapsilosis]
Length = 552
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 133/255 (52%), Gaps = 28/255 (10%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 11 CVNC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 65
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + +R++ AL I D I A ++ +A+
Sbjct: 66 GADQARATFAGGRQNAMESREQTITNGKRKIRRIAAALRI--PDFIAEAAGEWFKLALTM 123
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ P +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 124 NFVQGRRSNNVLATCLYVACRKEKTPHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 181
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 182 --LPLADPSLFIQHFVEKLDFKEKATKVARDATKLAQRMSADWIHEGRRPAGVAGACVLL 239
Query: 227 SALTHGLKFSKSDII 241
+A + + S S+I+
Sbjct: 240 AARMNNFRRSHSEIV 254
>gi|326921138|ref|XP_003206821.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Meleagris
gallopavo]
Length = 737
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 124/229 (54%), Gaps = 21/229 (9%)
Query: 27 GKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRERLMEK 73
G VLED+ +E FV+N+ G S G FV T+ + A SR + ++
Sbjct: 86 GSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHANLGKESRAQTLQN 145
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P
Sbjct: 146 GKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTP 203
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NK 192
+L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G N
Sbjct: 204 HMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFGDKNH 258
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 259 EVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 307
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 505 DGELDLSGIDDSEIDRYILNETEAQIKAELWMKENADYLKEQKEKEARIAKEK------- 557
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 505
EL KE + K+AA+ + A TA EA +ML +K++SS
Sbjct: 558 -----------ELGIY---------KEHKPKKAAKKREPIQASTAGEAIEKMLEQKKISS 597
Query: 506 KINYDVLEKL 515
KINY+VL L
Sbjct: 598 KINYNVLRDL 607
>gi|393243240|gb|EJD50755.1| hypothetical protein AURDEDRAFT_182141 [Auricularia delicata
TFB-10046 SS5]
Length = 1042
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 25/279 (8%)
Query: 1 MVWCSSCA-RHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M C +C+ H+ + C D CG V+E++ E TF + +G + + G +V
Sbjct: 235 MARCKACSGSHIESDSATGTSFCAD-CGIVVEENAIVAEITFGETGSGAAMVQGAYVGAG 293
Query: 60 QSEY-----------GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
S G SRE+ ME + Q+ +A+ + E I A+R++ +A+
Sbjct: 294 SSGARMSGMHGRQVGGESREQTMENGRRRIMQVASAMRLPEI--IGERAQRYFKLALGTG 351
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
F KGR++ V A CLY+ACRQ+ +LIDFS+ L +NV+ LG YL I+ +
Sbjct: 352 FVKGRKSLYVVAVCLYVACRQRKTSHMLIDFSDMLQVNVFSLGRTYLDFINDCNISKQD- 410
Query: 169 VLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L+ +DP+ ++H+F L G +V A ++ DW+ GR+PSG+CGAAL ++
Sbjct: 411 -LELIDPATYIHRFASLLEFGEETSRVASDAVRLVRRFSTDWMVFGRRPSGICGAALLLA 469
Query: 228 ALTHGLKFSKSDIIE-------DFMARKKELHEGVAANL 259
A + + S +II+ M R +E + +A L
Sbjct: 470 ARMNNFRRSVQEIIQVVKIADTTIMKRLEEFKQTPSAAL 508
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D +D+ E+DG + EE K+ IW E+NR+YL+ AAK A
Sbjct: 844 DELLGLDEDELDGLILTPEEVQLKERIWVEINRDYLQNLAAKMAV--------------- 888
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT--RRMLTKKRLSSK 506
E A A K RK+ Q + ++ N T L+A R L K++S K
Sbjct: 889 --------ESGGGAEAQKRKPRKKGQGNKPRDSNNP----TGLDAVDAARKLVHKKVSKK 936
Query: 507 INYDVLEKLF 516
INY LE LF
Sbjct: 937 INYAALEGLF 946
>gi|401881866|gb|EJT46148.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 2479]
gi|406701129|gb|EKD04282.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 8904]
Length = 673
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 10/213 (4%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR----TIQSEYGASRERLMEKAFD 76
+ C CG +E +E F + A G+ + G FV I S G S E + E+
Sbjct: 23 VVCQDCGIEVEQGILVSEIGFSEGAGGRVHVQGTFVSHNSTGINSNRGVSSENIKEEGRK 82
Query: 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
++ + N + I S + A+RFY +AV F +GRRT+ V ASC+YL R + +L
Sbjct: 83 RIQLICNQMGIAPS--VQRGAQRFYSLAVDNKFNRGRRTDFVVASCIYLYSRFEKDALML 140
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 195
IDFS L INVYELGA YL+L L + +L ++DP+++ +F +RL G + V
Sbjct: 141 IDFSERLQINVYELGATYLKLRSCLNL---DQILPEIDPAVYNIRFANRLDFGAASATVA 197
Query: 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
A ++ K DW+T GR+P+G+CGA L ++A
Sbjct: 198 RDASRLIKRFKADWMTAGRRPAGICGACLVIAA 230
>gi|303317508|ref|XP_003068756.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240108437|gb|EER26611.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320038733|gb|EFW20668.1| transcription factor tfiiib complex subunit brf1 [Coccidioides
posadasii str. Silveira]
Length = 805
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS---------EYGA--- 65
D Q C CG V+ + N +E TF ++++G + + G F+ QS + G
Sbjct: 64 DGQKVCSGCGTVISEANIVSEITFGESSSGAAVVQGTFIGADQSHGRSTGPGFQRGGGVE 123
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 124 SREITEQNGNRYIAQLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYV 181
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 182 ACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAK 241
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 242 QLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 292
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 29/133 (21%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L + E K+ IW N++YL Q AK A K AL A+
Sbjct: 516 DPEVRYCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRALTAA----------- 559
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEA----------KNSGPAQTALEATRRMLTKKRLSS 505
+A+ A K RK ++ + + S A T EATR ML ++ S
Sbjct: 560 ---DPSASGAGHKPRKRRKGRMGDVTYLTGEGGDGDRASSRASTPAEATRLMLERRGFSK 616
Query: 506 KINYDVLEKLFDD 518
KINY +LEK+++D
Sbjct: 617 KINYSLLEKMYED 629
>gi|239607291|gb|EEQ84278.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis ER-3]
Length = 818
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D C CG V+ + N +E TF ++A+G + + G FV QS +G
Sbjct: 66 DGMKVCSGCGTVVSEANIVSEITFGESASGAAIVQGTFVGAGQSHGRSFGPGFQRGGGME 125
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 126 SREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 183
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 184 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAK 243
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 244 QLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 294
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 393 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 446
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 487 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 543
Query: 447 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 504
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 544 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 602
Query: 505 SKINYDVLEKLFDD 518
KINY +LE++++D
Sbjct: 603 KKINYRLLEEMYED 616
>gi|119186801|ref|XP_001244007.1| hypothetical protein CIMG_03448 [Coccidioides immitis RS]
gi|392870729|gb|EAS32553.2| transcription factor TFIIIB complex subunit brf1 [Coccidioides
immitis RS]
Length = 804
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS---------EYGA--- 65
D Q C CG V+ + N +E TF ++++G + + G F+ QS + G
Sbjct: 64 DGQKVCSGCGTVISEANIVSEITFGESSSGAAVVQGTFIGADQSHGRSTGPGFQRGGGVE 123
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 124 SREITEQNGNRYIAQLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYV 181
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 182 ACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAK 241
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 242 QLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 292
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 29/133 (21%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L + E K+ IW N++YL Q AK A K AL A+
Sbjct: 517 DPEVRYCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRALTAA----------- 560
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEA----------KNSGPAQTALEATRRMLTKKRLSS 505
+A+ A K RK ++ + + S A T EATR ML ++ S
Sbjct: 561 ---DPSASGAGHKPRKRRKGRMGDVTYLTGEGGDGDRASSRASTPAEATRLMLERRGFSK 617
Query: 506 KINYDVLEKLFDD 518
KINY +LEK+++D
Sbjct: 618 KINYSLLEKMYED 630
>gi|258563476|ref|XP_002582483.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907990|gb|EEP82391.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 791
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS---------EYGA--- 65
D Q C CG V+ + N +E TF ++++G + + G F+ QS + G
Sbjct: 64 DGQKVCSGCGTVISEANIVSEITFGESSSGAAIVQGTFIGADQSHGRSTGPGFQRGGGVE 123
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 124 SREITEQNGNRYIAQLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYV 181
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 182 ACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAK 241
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 242 QLEFGPSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 292
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 95/243 (39%), Gaps = 48/243 (19%)
Query: 294 EFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERESDSPFMSRVDKVQSPE 349
+ T S G D P + +++ + EE+ S+ E E + S V S
Sbjct: 412 QLSTESNTTTSGTDKPKQPKSNKKQQIPEPTEEDLASESALESEMTALLSSGSSLVASAG 471
Query: 350 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD-NFSDID-DFEVDGYLHNEE 407
P P N + +A +G+ SD D + ++ D D EV L +
Sbjct: 472 PPKTTPPSNAESSSAKRQGK-------------PVSDSQDIDPAEFDSDPEVRHCLLSPT 518
Query: 408 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 467
E K+ IW N++YL Q AK A A A + A
Sbjct: 519 EVEIKERIWVHENKDYLRAQQAKALKRALAAAD-------------------PSTAGGAH 559
Query: 468 KSRKEKQQK------RAAEA----KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
K RK ++ + A E + S A T EATR ML ++ S KINY +LEKL++
Sbjct: 560 KPRKRRKGRIGDVTYLAGEGGDGDRASSRASTPAEATRLMLERRGFSKKINYSLLEKLYE 619
Query: 518 DSV 520
D V
Sbjct: 620 DDV 622
>gi|393214015|gb|EJC99509.1| hypothetical protein FOMMEDRAFT_160578 [Fomitiporia mediterranea
MF3/22]
Length = 724
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C C + + C CG V+E++ +E F ++++G + + G+FV
Sbjct: 34 CGDCGGTIIEYDAAAGNGFCVGCGTVVEENAIVSEVVFGESSSGAAIVQGSFVGQGATHA 93
Query: 59 -IQSEYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAK-RFYGIAVARNFTK 111
+ YG SRE+ ++ A R+++N + E+V A R Y +A+ FTK
Sbjct: 94 RMGGPYGKRNTSESREQTIDNA---SRKIRNVGALMRLSEVVQTAAIRMYTLALEHKFTK 150
Query: 112 GRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
GR+ V A CLY+ACRQK ++ ++LIDFS+ L +NV++LG +LQL Q L + L
Sbjct: 151 GRKNMNVIAVCLYIACRQKETRNYMLIDFSDLLQVNVFDLGHTFLQLVQTLNLR-----L 205
Query: 171 KQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
VDPS ++ +F LL G++ KV A ++A RDW++ GR+P+G+CGA L ++A
Sbjct: 206 PLVDPSHYIARFA-ALLEFGDETPKVAADAVRLVARFDRDWMSRGRRPAGICGACLLLAA 264
Query: 229 LTHGLKFSKSDIIE 242
+ + S ++++
Sbjct: 265 RMNNFRRSVQEVVQ 278
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 30/117 (25%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
+L +EEE K+ +W EMN++YLE AAKEA E +
Sbjct: 511 FLLSEEEVKIKERVWVEMNKDYLEALAAKEA------------------------EKVGS 546
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRMLTKK-RLSSKINYDVLEKLF 516
A K RK + R +S PA TA++A R M+ K + S +INY+ LE LF
Sbjct: 547 APTKTRKKRKTDNKPR----DSSTPAGLTAVDAVRSMIKKSAKYSRRINYEALENLF 599
>gi|395861899|ref|XP_003803211.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Otolemur garnettii]
Length = 678
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+++ T+GRR V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRMAHVTAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D T DG + S IDD E+D Y+ NE E K +W + N EYL EQ+ KEA A K
Sbjct: 438 DPTDTCGDGELDLSGIDDHEIDRYILNEAEARVKAELWMKENAEYLREQSEKEARIAKEK 497
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 498 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 530
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 531 EQKKISSKINYSVLRDL 547
>gi|327356251|gb|EGE85108.1| transcription factor TFIIIB complex subunit brf1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 820
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D C CG V+ + N +E TF ++A+G + + G FV Q+ +G
Sbjct: 66 DGMKVCSGCGTVVSEANIVSEITFGESASGAAIVQGTFVGAGQTHGRSFGPGFQRGGGME 125
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 126 SREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 183
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 184 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAK 243
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 244 QLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 294
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 393 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 446
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 487 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 543
Query: 447 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 504
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 544 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 602
Query: 505 SKINYDVLEKLFDD 518
KINY +LE++++D
Sbjct: 603 KKINYRLLEEMYED 616
>gi|390469562|ref|XP_003734142.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Callithrix jacchus]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>gi|149238860|ref|XP_001525306.1| hypothetical protein LELG_03234 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450799|gb|EDK45055.1| hypothetical protein LELG_03234 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 550
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 134/255 (52%), Gaps = 28/255 (10%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 10 CVNC-----GHTLFDVNRYTAAGDVSCTRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 64
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + +R++ AL I +D I A ++ +A+
Sbjct: 65 GADQARATFAGGRQNAMESREQTISNGKRKIRRLAAALKI--ADFIADAAGEWFKLALTM 122
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 123 NFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 180
Query: 168 NVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L G KV A + M DWI GR+P+G+ GA + +
Sbjct: 181 --LPLADPSLFIQHFVEKLDFGDKTTKVAKDAVKLAHRMSADWIHEGRRPAGIAGACVLL 238
Query: 227 SALTHGLKFSKSDII 241
+A + + S S+I+
Sbjct: 239 AARMNNFRRSHSEIV 253
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 29/137 (21%)
Query: 392 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEG 451
SD DD V+ EE K+ IW +N +Y+ EQ K
Sbjct: 431 SDDDDAIVEESQMTPEEVAMKERIWTSLNHDYMIEQERKRLK------------------ 472
Query: 452 LQAAQELAAAAAAAVAKSRKEKQ--------QKRAAEA--KNSGPAQTALEATRRMLTKK 501
Q A EL +A+ R++K QK + G ++A ++T+ L++
Sbjct: 473 -QEADELTGNTSASNGGPRRKKPRNSVPPELQKEIGDIVLDEDGTPRSAADSTKMFLSRT 531
Query: 502 RLSSKINYDVLEKLFDD 518
+S KINY+ L+ LF D
Sbjct: 532 SVSKKINYESLQGLFGD 548
>gi|441666045|ref|XP_004091858.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Nomascus leucogenys]
Length = 699
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 60/152 (39%), Gaps = 49/152 (32%)
Query: 386 DGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIWEEMNREY 423
DG + S IDD E+D Y+ NE E K +W N EY
Sbjct: 444 DGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKAELWMRENAEY 503
Query: 424 LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN 483
L EQ KEA A K EL KE + K++ + +
Sbjct: 504 LREQREKEARIAKEK------------------ELGIY---------KEHKPKKSCKRRE 536
Query: 484 SGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +K++SSKINY VL L
Sbjct: 537 PIQASTAREAIEKMLEQKKISSKINYSVLRGL 568
>gi|119602312|gb|EAW81906.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_a
[Homo sapiens]
Length = 699
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 62/159 (38%), Gaps = 49/159 (30%)
Query: 379 DATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIW 416
D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKAELW 496
Query: 417 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 476
N EYL EQ KEA A K EL KE + K
Sbjct: 497 MRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPK 529
Query: 477 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 530 KSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 568
>gi|328871796|gb|EGG20166.1| TATA box-binding protein-associated factor [Dictyostelium
fasciculatum]
Length = 750
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 20/229 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGASRERLMEKA 74
C C +V++ N +E F + + L G FV + +S G SR E A
Sbjct: 22 CTGCSRVIDGSNIVSELQFSETSG----LMGTFVNARGQVGRGSYRSLGGESRALSTENA 77
Query: 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 134
M + A +G D + + R Y A+ FTKGR T+ V A+CLY CR++ P
Sbjct: 78 RRRMHTI--AGQVGLKDVHIDMGVRLYETAMDFKFTKGRSTQIVSATCLYTVCRRELTPH 135
Query: 135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKK 193
LLIDFS + +NV+ L + +L+ Q L L VDP++F+ +F L ++
Sbjct: 136 LLIDFSEAIQLNVFVLASTFLKFIQTLGFQ-----LPLVDPALFIQRFAVGLEFEQKTQE 190
Query: 194 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
V +TA ++A MKRDW++ GR+PSG+CGA+L+++A HG K + +I++
Sbjct: 191 VANTALKLVARMKRDWMSIGRRPSGICGASLFIAAKIHGFKRTVKEIVQ 239
>gi|432940985|ref|XP_004082772.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 684
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 27/226 (11%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------------S 66
C CG VL+D+ +E FV+ G S G FV SE G S
Sbjct: 25 CMSCGSVLDDNIIVSEVEFVETGGGGSLAVGQFV---SSEGGQRLPSFGDSYYPGVGSQS 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + +++A ++ + + L + + + A FY +A+ + T G R+ V A+CLYL
Sbjct: 82 RAQTLQRAKQNINTLGHQLQMNQ--HCLDTAFNFYKMALNKRLTNGHRSSHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG V+L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDVLQVNVYVLGKVFLHLAKELCINAPA-----IDPCLYIPRFAQML 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
G N V TA ++ MKRDW+ TGR+PSGLCGAAL VSA H
Sbjct: 195 EFGEKNHDVSMTAMRLVQRMKRDWMHTGRRPSGLCGAALLVSAHMH 240
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 40/199 (20%)
Query: 330 FERESDSPFMSRVDKVQSPEPE-----SIGVPKNCTTQTASNEGEGDHTKTPGVDATT-- 382
F+++ D+ + + K++ PE + +P+ AS G T G+ +
Sbjct: 381 FDKDLDTLTVEALIKLEQKTPEEENECGMKIPERVGPSLASILGTMPSAATLGLPESINK 440
Query: 383 ------EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAA 436
E DG + S IDD E++ YL +E E K +W N +YL+EQ KEA A
Sbjct: 441 CTGEERENGDGELDLSGIDDSEIELYLLSESEIKIKTALWMAENSDYLKEQKEKEAKIAK 500
Query: 437 AKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRR 496
K EL KEK+ K + + ++ A TA EA +
Sbjct: 501 EK------------------ELGIY---------KEKKPKSSGKKRSQIRASTADEAIGK 533
Query: 497 MLTKKRLSSKINYDVLEKL 515
ML +K++S+KINYDVL+ L
Sbjct: 534 MLEQKKISTKINYDVLKDL 552
>gi|395746383|ref|XP_002825219.2| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Pongo abelii]
Length = 677
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>gi|22035556|ref|NP_001510.2| transcription factor IIIB 90 kDa subunit isoform 1 [Homo sapiens]
gi|397470867|ref|XP_003807033.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
paniscus]
gi|20455319|sp|Q92994.1|TF3B_HUMAN RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=hTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1; Short=hBRF; AltName: Full=TAF3B2;
AltName: Full=TATA box-binding protein-associated
factor, RNA polymerase III, subunit 2
gi|1737205|gb|AAB38876.1| TFIIB related factor hBRF [Homo sapiens]
gi|119602316|gb|EAW81910.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_d
[Homo sapiens]
gi|261857828|dbj|BAI45436.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [synthetic construct]
gi|410213426|gb|JAA03932.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410254028|gb|JAA14981.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410306454|gb|JAA31827.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410332909|gb|JAA35401.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 677
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>gi|383408305|gb|AFH27366.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
gi|384946668|gb|AFI36939.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>gi|380812142|gb|AFE77946.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>gi|402877358|ref|XP_003902396.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Papio anubis]
Length = 677
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>gi|297298726|ref|XP_001098066.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Macaca
mulatta]
Length = 621
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 27/236 (11%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 250
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 62/159 (38%), Gaps = 49/159 (30%)
Query: 379 DATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIW 416
D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 359 DPKDASGDGELDLSGIDDLEIDRHDLSTPWCAKAKSQPHFPVLAQYILNESEARVKAELW 418
Query: 417 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 476
N EYL EQ KEA A K EL KE + K
Sbjct: 419 MRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPK 451
Query: 477 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 452 KSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 490
>gi|295660722|ref|XP_002790917.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281169|gb|EEH36735.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 800
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA------------ 65
D C CG V+ + N +E TF ++A+G + + G FV QS +
Sbjct: 66 DGMKVCSGCGTVVSESNIVSEITFGESASGAAIVQGTFVGADQSHGRSGGPGFQRGGGME 125
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 126 SREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 183
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 184 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAK 243
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 244 QLEFGTSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 294
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 494 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 535
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 501
+E VA +++++ R + A T EATRRML K+
Sbjct: 536 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEATRRMLEKR 595
Query: 502 RLSSKINYDVLEKLFDD 518
S KINY +LE++++D
Sbjct: 596 GFSKKINYRLLEEMYED 612
>gi|344230463|gb|EGV62348.1| BRF1-domain-containing protein [Candida tenuis ATCC 10573]
Length = 588
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/460 (26%), Positives = 208/460 (45%), Gaps = 61/460 (13%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--------RERLME 72
L C CG V+ ++ +E +F +NA+G + + G V + Q+ S R++ M
Sbjct: 27 LTCSSCGTVVHENPIVSEVSFGENASGGAVVQGTMVGSDQARVPISGRQNAMESRDQTML 86
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+++ + +LNI D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 87 TGRRNIKDLAASLNI--PDYISDAAHGWFKLALNTNFVQGRRSQNVTAACLYIACRKEKT 144
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-----L 187
LLIDFS+ L I+V+ LGA +L++ + L I L VDPS+F+ F +RL
Sbjct: 145 SHLLIDFSSRLQISVFSLGATFLKMVRTLNITK----LPLVDPSLFISHFAERLNLDREK 200
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMAR 247
P +V A I M +D I GR+P+G+ GA + ++ +G + S+I+
Sbjct: 201 PNSTNQVISDAIKISFRMAKDSIVEGRRPAGVAGACVMMALRMNGFQKDPSEIV------ 254
Query: 248 KKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGAD 307
+A VS ++ L D K + G R EF SE E
Sbjct: 255 ------AIA--------HVS--SDTLQARMDEFKRTSSGKLR--IREFRDKSEQAEAAMP 296
Query: 308 PPAFQVAERERMVKASAE----ENSSFERESDSPFMSRVDKVQSPEPESIGVPKNC---- 359
P + ER + A+AE E S + S + + Q E +S VP+N
Sbjct: 297 PSYTRNRERSKKDIAAAEGSLVEVSETDSRSATTHLETSADTQPQETDSQYVPQNTDSTV 356
Query: 360 ----TTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGY---LHNEEEKHYK 412
T ++ + D+ ++ G + +E D S + + G+ L + + YK
Sbjct: 357 TNSQVTSLNTDSQDEDYMESRGEETISEIKVAKDAPSFVHEMASLGFNPELLQHDFERYK 416
Query: 413 KIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
II + + +Y E + ++ A + + N P+GL
Sbjct: 417 DIIEKGYSLDYPEPEPTSDSETADKEEEFDP---NKPQGL 453
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 41/198 (20%)
Query: 330 FERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEAS---- 385
FER D + + + PEPE ++TA E E D K G+ + S
Sbjct: 412 FERYKD--IIEKGYSLDYPEPEP-----TSDSETADKEEEFDPNKPQGLVKYCKPSSYYL 464
Query: 386 DGSDNFSDIDDFEV-----DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 440
D + +D+DD E+ + YL+++E K+ +W MN++YL EQ K
Sbjct: 465 DLVSSSADLDDVELTEAEENWYLNSDEMAKAKEQLWLSMNKDYLLEQERKR--------- 515
Query: 441 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN-----SGPAQTALEATR 495
L+A + + K RK K + +G +T ++ +
Sbjct: 516 -----------LKAETDELTGNTSGKKKRRKTKADREKGIIDETLEALTGEPRTPADSVK 564
Query: 496 RMLTKKRLSSKINYDVLE 513
+M+ +K S KINYD L+
Sbjct: 565 QMMQRKTFSKKINYDALD 582
>gi|395861901|ref|XP_003803212.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Otolemur garnettii]
Length = 651
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 150/303 (49%), Gaps = 54/303 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+++ G S G FV + D R +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVESSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 NALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N + + + A F+ +AV+++ T+GRR V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRRMAHVTAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLP 260
+L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 183 LLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV----- 226
Query: 261 NNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 318
KV S + + L + +DT P + + +EFM I LE DPP++ +R+
Sbjct: 227 ----KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEECDPPSYTAGQRKL 274
Query: 319 MVK 321
+K
Sbjct: 275 RMK 277
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 345 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 404
++ P ES+ P +E + + D T DG + S IDD E+D Y+
Sbjct: 377 IRPPALESLLGPLPTAASLGISESIRECISSQSRDPTDTCGDGELDLSGIDDHEIDRYIL 436
Query: 405 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 464
NE E K +W + N EYL EQ+ KEA A K EL
Sbjct: 437 NEAEARVKAELWMKENAEYLREQSEKEARIAKEK------------------ELGIY--- 475
Query: 465 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 476 ------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDL 520
>gi|399949553|gb|AFP65211.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949714|gb|AFP65372.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949718|gb|AFP65375.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949887|gb|AFP65544.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949891|gb|AFP65547.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399950057|gb|AFP65713.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
Length = 427
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 15/246 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATF-VKNAAGQSQLSGNFVRTIQ-- 60
C C ++ C CG ++EDH + E F N + + G+F++ +
Sbjct: 3 CDKCGSDAIEFNVSQGKILCTFCGLMIEDHLANPELLFDNSNVQKKGTIHGSFLKNVSPG 62
Query: 61 --SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+ + E ++ A + Q NAL + S + A RF+ A R F + E V
Sbjct: 63 SLNPTNRNTEIILSSARRKIHQFGNALKLKSSYQ--EEAYRFFVFAFQRGFVPAHKFESV 120
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
SCLY+ CR+K P LL+DFS+ I Y++G ++L+ ++ ++ L DPS+F
Sbjct: 121 CISCLYVVCRRKKTPHLLVDFSDLTQIQTYKIGGIFLKFIRIFHVH-----LPVADPSLF 175
Query: 179 LHKFTDRLLPGGNKKVC--DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
+++F R L GNK C ++ ++A MKR+W+ +GR+P+GLCGAA+ ++A HG++ +
Sbjct: 176 VYRFISR-LKIGNKFECIARSSFRLIARMKREWMNSGRRPAGLCGAAILLAAKMHGIQKT 234
Query: 237 KSDIIE 242
+ +I E
Sbjct: 235 QKEIGE 240
>gi|297696024|ref|XP_002825220.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Pongo abelii]
Length = 650
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 150/303 (49%), Gaps = 54/303 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+++ G S G FV + D R +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 NALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLP 260
+L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 183 LLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV----- 226
Query: 261 NNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 318
KV S + + L + +DT P + + +EFM I LE DPP++ +R+
Sbjct: 227 ----KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEECDPPSYTAGQRKL 274
Query: 319 MVK 321
+K
Sbjct: 275 RMK 277
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 410 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 469
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 470 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 502
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 503 EQKKISSKINYSVLRGL 519
>gi|338753410|ref|NP_001229717.1| transcription factor IIIB 90 kDa subunit isoform 6 [Homo sapiens]
gi|397470869|ref|XP_003807034.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 3 [Pan
paniscus]
gi|56270588|gb|AAH86856.1| BRF1 protein [Homo sapiens]
Length = 650
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 150/303 (49%), Gaps = 54/303 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+++ G S G FV + D R +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 NALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLP 260
+L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 183 LLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV----- 226
Query: 261 NNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 318
KV S + + L + +DT P + + +EFM I LE DPP++ +R+
Sbjct: 227 ----KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEECDPPSYTAGQRKL 274
Query: 319 MVK 321
+K
Sbjct: 275 RMK 277
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 410 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 469
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 470 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 502
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 503 EQKKISSKINYSVLRGL 519
>gi|443896379|dbj|GAC73723.1| transcription initiation factor TFIIIB, Brf1 subunit [Pseudozyma
antarctica T-34]
Length = 763
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 140/265 (52%), Gaps = 36/265 (13%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C++C + D+Q C +CG VLE+ ++ TF +N+AG + + G+ + Q+
Sbjct: 3 CTNCGSSAIDY--ADNQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAADQARA 60
Query: 63 ------------YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV----- 105
SRE + A + M +AL I + A RF+ +A+
Sbjct: 61 RVSGPGGFRGGYVSESREMTISNARTGIHNMASALRI--PSHVADRALRFFTLALDGGAS 118
Query: 106 ------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+L +
Sbjct: 119 AATGDEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLKLIR 178
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPS 217
VL + L +DPSI++ +F LL G+ +KV A +++ ++DWIT GR+P+
Sbjct: 179 VLNLR-----LPLIDPSIYIARFA-ALLDFGDETQKVAYDASRLVSRFQKDWITEGRRPA 232
Query: 218 GLCGAALYVSALTHGLKFSKSDIIE 242
G+CGA L ++A + + S S++I+
Sbjct: 233 GICGACLMLAARMNHFRRSVSEVIQ 257
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 375 TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
T G + A+ G D +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 509 TSGGRRRSVAAAGVDELADLDEEELDRFILSPEEVRIKERVWMEFNKDWMEQTLKKQLK- 567
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
L+ Q++ + + K K+ K +A + +A E+
Sbjct: 568 -----------------LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHTSSAAESA 606
Query: 495 RRMLTKKRLSSKINYDVLEKLF 516
+ ML +K+ S KINYD L LF
Sbjct: 607 KMMLKQKQFSKKINYDALNNLF 628
>gi|327294325|ref|XP_003231858.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
rubrum CBS 118892]
gi|326465803|gb|EGD91256.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
rubrum CBS 118892]
Length = 876
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTIMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 314
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
DD EV L + E K+ IW N++YL Q AK A KA EA G
Sbjct: 556 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHR 611
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
++ V +E + S A T EATR ML ++ S KINY + E+
Sbjct: 612 PRKRRKGRIGDVTYLSRESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQ 670
Query: 515 LFDDS 519
++ D+
Sbjct: 671 MYGDN 675
>gi|402877360|ref|XP_003902397.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Papio anubis]
Length = 650
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 150/303 (49%), Gaps = 54/303 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+++ G S G FV + D R +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 NALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLP 260
+L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 183 LLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV----- 226
Query: 261 NNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 318
KV S + + L + +DT P + + +EFM I LE DPP++ +R+
Sbjct: 227 ----KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEECDPPSYTAGQRKL 274
Query: 319 MVK 321
+K
Sbjct: 275 RMK 277
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 410 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 469
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 470 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 502
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 503 EQKKISSKINYSVLRGL 519
>gi|296822208|ref|XP_002850247.1| transcription factor tfiiib complex subunit brf1 [Arthroderma otae
CBS 113480]
gi|238837801|gb|EEQ27463.1| transcription factor tfiiib complex subunit brf1 [Arthroderma otae
CBS 113480]
Length = 877
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 82 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGRIE 141
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 142 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 199
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 200 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNHFIMNPIDPESLIYRFSK 259
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 260 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 310
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
DD EV L + E K+ IW N++YL Q AK A A+A +AS P G +
Sbjct: 557 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASR---PGGHRP 613
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
+ S + K E+ A T EATR ML ++ S KINY + E+
Sbjct: 614 RKRRKGRMGDVTYLSGEGKNAD--GESVAGSRASTPAEATRLMLERRGFSKKINYQLFEQ 671
Query: 515 LFDD 518
++ D
Sbjct: 672 MYGD 675
>gi|315056331|ref|XP_003177540.1| transcription factor TFIIIB complex subunit brf1 [Arthroderma
gypseum CBS 118893]
gi|311339386|gb|EFQ98588.1| transcription factor TFIIIB complex subunit brf1 [Arthroderma
gypseum CBS 118893]
Length = 877
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 16/225 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAA 308
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 361 TQTASNEGEGDH----TKTPGVDATTEASDGSDNFSDI--------DDFEVDGYLHNEEE 408
T T + + DH T T D+TT SDI DD EV L + E
Sbjct: 511 TSTTNGDNGTDHQNAETNTAADDSTTPPQTQQPVSSDIEINPLEFEDDPEVQFCLLSPAE 570
Query: 409 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 468
K+ IW N++YL Q AK A KA EA G ++ V
Sbjct: 571 VEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHRPRKRRKGRIGDVTY 626
Query: 469 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
E + S A T EATR ML ++ S KINY + E+++ D+
Sbjct: 627 LSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 676
>gi|302503376|ref|XP_003013648.1| hypothetical protein ARB_00095 [Arthroderma benhamiae CBS 112371]
gi|291177213|gb|EFE33008.1| hypothetical protein ARB_00095 [Arthroderma benhamiae CBS 112371]
Length = 878
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 314
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 7/177 (3%)
Query: 344 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 402
++ P+P G K+ Q + + D + TP +SD N + DD EV
Sbjct: 505 EITQPKPTDDGD-KDADHQNTEPDADTDVSTTPPKPQQPVSSDVEINPLEFEDDPEVQFC 563
Query: 403 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 462
L + E K+ IW N++YL Q AK A KA EA G ++
Sbjct: 564 LLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHRPRKRRKGR 619
Query: 463 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
V E + S A T EATR ML ++ S KINY + E+++ D+
Sbjct: 620 IGDVTYLSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 675
>gi|410898858|ref|XP_003962914.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 591
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 22/220 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+ G S G FV +A +++ +
Sbjct: 25 CMGCGSVLEDNVIVSEVEFVETGGGGSHAVGRFVSA--------------EAKNNINTL- 69
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
L + + + A FY +A+A++ T+G R V A+C+Y+ CR + P +L+D S+
Sbjct: 70 -GLQLQMNRHCLDTAFNFYKMALAKHLTRGHRCAHVAAACIYMVCRTEGTPHMLLDLSDV 128
Query: 143 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDI 201
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA +
Sbjct: 129 LQVNVYVLGRTFLTLSRELCINAPA-----IDPCLYIPRFAQLLEFGEKNHEVSMTAMRL 183
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+ MKRDW+ TGR+PSGLCGAAL V+A H + + +I+
Sbjct: 184 VQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTTKEIV 223
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 474 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
QQ+ +A + A +A EA +ML +KR+SSKINYDVL+ L
Sbjct: 425 QQRGSARKRAPIRANSADEAIGKMLEQKRISSKINYDVLKDL 466
>gi|302666612|ref|XP_003024903.1| hypothetical protein TRV_00908 [Trichophyton verrucosum HKI 0517]
gi|291188980|gb|EFE44292.1| hypothetical protein TRV_00908 [Trichophyton verrucosum HKI 0517]
Length = 878
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 314
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
DD EV L + E K+ IW N++YL Q AK A KA EA G
Sbjct: 556 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHR 611
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
++ V E + S A T EATR ML ++ S KINY + E+
Sbjct: 612 PRKRRKGRIGDVTYLSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQ 670
Query: 515 LFDDS 519
++ D+
Sbjct: 671 MYGDN 675
>gi|331244858|ref|XP_003335068.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309314058|gb|EFP90649.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 635
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 147/567 (25%), Positives = 243/567 (42%), Gaps = 108/567 (19%)
Query: 17 YDS---QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------------RTIQS 61
YDS C CG V++++ E TF +++ G + L G+ + R
Sbjct: 17 YDSSAGNAVCTTCGYVVDENTIVAEVTFGESSNGAAVLQGSSLGATDLRARIGGPRGRPQ 76
Query: 62 EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
+ SR + + + M +AL +G D I A RF+ +AV+ F GRR+ V AS
Sbjct: 77 QSAESRAETLAQGMRKLTAMAHALRLG--DSIAESAHRFFTLAVSNGFVMGRRSPYVLAS 134
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
C+Y+ACR P +LID S+ L +NV+ +GA YL+L + L + + + VDPS+++ +
Sbjct: 135 CIYVACRLAKLPTMLIDISDLLQVNVFIVGATYLKLVKELCLQN----IPLVDPSLYISR 190
Query: 182 FTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F L G + +KV A ++ DW+T GR+P+G+ GA+L ++A +G + S +I
Sbjct: 191 FASLLEFGEDTQKVAYDAARLVKRFDTDWMTAGRRPAGIAGASLLIAARMNGFRRSVLEI 250
Query: 241 IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHK-DTGKPFACGLCRSCYEEFMTIS 299
++ V M +V K + + + A G + EEF TI
Sbjct: 251 VQ-----------------------VVKMADVTIKKRLEEFRVTASG--KMTVEEFRTI- 284
Query: 300 EGLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGV 355
LE +PPA + ++ M ++ +S S+ P QSP P ++
Sbjct: 285 -WLEEAENPPALKKNRRKERKKEMADDDDDDQASVITHSNEP------PHQSPAPSNLA- 336
Query: 356 PKNCTTQTASNEGEGDHTKTPG-------------VDATT--------EASDGSDNFSDI 394
PK T T + KTP D+ T E S++ +D
Sbjct: 337 PKQGTQPTVTQVNTLKR-KTPDDEHPEKEAWGGSIADSETEIEVHEFKETDPNSNDGADW 395
Query: 395 DDFEVDGYLHNEEEKHYKK----IIWEEMN----REYLEEQAAKEAAAAAAKAALEASY- 445
D +++ + E E H ++ E++ R+ E Q ++A +
Sbjct: 396 YDNQIEQVITQEVESHLISGDGFVLQTELDEKERRQKEEAQKIQDARLDDLDDDELDQFI 455
Query: 446 ---KNCPEGLQAAQELAAAAAAAVA--KSRKEKQQKRAAEAKN---------SGPAQ-TA 490
K + EL VA K R+ + + A+ N PA T
Sbjct: 456 LNDKEVEMKTRVWMELNREYLEKVALKKEREANGELKVAKKYNRTKSKPRDSENPAGLTV 515
Query: 491 LEATRRML-TKKRLSSKINYDVLEKLF 516
E+ + M+ +KK+LSSKINY + + LF
Sbjct: 516 EESVKNMINSKKKLSSKINYAIADSLF 542
>gi|326475285|gb|EGD99294.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
tonsurans CBS 112818]
Length = 881
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 314
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 344 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 402
++ P+P G K+ Q + D++ TP +SD N + DD EV
Sbjct: 502 EIAQPKPTDDGD-KDADHQNTEPNADTDNSTTPPKSQQPVSSDVEINPLEFEDDPEVQFC 560
Query: 403 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC--PEGLQAAQ---- 456
L + E K+ IW N++YL Q AK A A+A +AS P + +
Sbjct: 561 LLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASRSGAHRPRKRRKGRIGDV 620
Query: 457 -----ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 511
E A +VA SR A T EATR ML ++ S KINY +
Sbjct: 621 TYLSGETKNADGESVAGSR----------------ASTPAEATRLMLERRGFSKKINYQL 664
Query: 512 LEKLFDDS 519
E+++ D+
Sbjct: 665 FEQMYGDN 672
>gi|326480366|gb|EGE04376.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
equinum CBS 127.97]
Length = 881
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 16/231 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPRFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 314
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 344 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 402
++ P+P G K+ Q + D++ TP +SD N + DD EV
Sbjct: 502 EIAQPKPTDDGD-KDADHQNTEPNADTDNSTTPPKSQQPVSSDVEINPLEFEDDPEVQFC 560
Query: 403 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC--PEGLQAAQ---- 456
L + E K+ IW N++YL Q AK A A+A +AS P + +
Sbjct: 561 LLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASRSGAHRPRKRRKGRIGDV 620
Query: 457 -----ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 511
E A +VA SR A T EATR ML ++ S KINY +
Sbjct: 621 TYLSGETKNADGESVAGSR----------------ASTPAEATRLMLERRGFSKKINYQL 664
Query: 512 LEKLFDDS 519
E+++ D+
Sbjct: 665 FEQMYGDN 672
>gi|448100207|ref|XP_004199299.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359380721|emb|CCE82962.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 571
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERLME 72
+ C RCG V E++ +E + +++ G + + G V Q+ YG SRE+ E
Sbjct: 27 VSCSRCGTVREENPIVSEVQYGESSTGAAMVQGAMVGADQARAPYGGRQNAMESREQTFE 86
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
K ++++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 87 KGKKRIKKIATALRI--PDYISDAASEWFRLALLNNFVQGRRSQNVLAACLYVACRKEKT 144
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
+LIDFS+ L I+VY LGA +L++ + L I L DPS+F+ F ++L
Sbjct: 145 HHMLIDFSSRLQISVYSLGATFLKMVKALQITK----LPLADPSLFIQHFVEKLGFREST 200
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M DWI GR+P+G+ GA + ++A + + + ++I+
Sbjct: 201 SKVIKDAVKLAQRMANDWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIV 250
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 39/161 (24%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D ++ S +F D+D+ E+D +L ++E K+ +W +N ++L Q K
Sbjct: 422 DLLSKISSNPKDFEDLDEEELDQFLLTDDEYKLKERVWTGLNHDFLVNQEKKRLK----- 476
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ--------------------QKRA 478
Q A EL + A K R++ + + A
Sbjct: 477 --------------QEADELTGNTSGATRKKRRQNKSPLDGIEGIGGDIVSEMGVCEAIA 522
Query: 479 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
+++G +A ++ RRML+KK S KINY L LFDD+
Sbjct: 523 GIGESAGEPLSAADSARRMLSKKAFSKKINYASLGDLFDDN 563
>gi|254568370|ref|XP_002491295.1| TFIIIB B-related factor [Komagataella pastoris GS115]
gi|238031092|emb|CAY69015.1| TFIIIB B-related factor [Komagataella pastoris GS115]
gi|328352187|emb|CCA38586.1| Transcription factor IIIB 70 kDa subunit [Komagataella pastoris CBS
7435]
Length = 568
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 131/231 (56%), Gaps = 15/231 (6%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERL 70
S L C CG V E++ +E +F + A+G + + G FV + Q+ +G SRE+
Sbjct: 26 SDLACVECGTVSEENPIVSEVSFGETASGAATVQGAFVGSDQARANFGNNRGSLDSREQT 85
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ K ++ + L I +D I A ++ +A+ NF +GRR++ V A+CLY+ACR+
Sbjct: 86 LNKGKRRIKTVAAVLGI--ADYISDAAYLWFRLALTNNFVQGRRSQNVVAACLYIACRKV 143
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
+LIDFS+ L I+VY +GA +L++ + L+I++ L DPS+F+ F ++L G
Sbjct: 144 KTHHMLIDFSSRLQISVYSVGATFLKMVKTLHISN----LPLADPSLFIQHFAEQLNFGN 199
Query: 191 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+K KV A + M DWI GR+P+G+ GA L ++A + + + +I
Sbjct: 200 SKIKVIKDAVKLAHRMADDWIHEGRRPAGIAGACLMLAARMNNFRRTHLEI 250
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
+N D+DD E++G+L E+E K+ +W +N ++L EQ + + K A + K
Sbjct: 439 ENLEDVDDEELEGFLLTEDESRIKERVWVGLNHDFLIEQEKRRLKEESDKLAGHTTIKRR 498
Query: 449 ------PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 502
+GL + A+ + + Q + + G +AL + + ML KK
Sbjct: 499 RKKNIDDDGLGIPKTELTEFASGLDPAALGLQ----SSINSIGEGSSALSSAKSMLQKKS 554
Query: 503 LSSKINYDVLEKLF 516
S K+NY +E LF
Sbjct: 555 YSKKLNYAAVENLF 568
>gi|448103917|ref|XP_004200158.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359381580|emb|CCE82039.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 570
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERLME 72
+ C RCG V E++ +E + +++ G + + G V Q+ YG SRE+ E
Sbjct: 27 VSCSRCGTVREENPIVSEVQYGESSTGAAMVQGAMVGADQARAPYGGRQNAMESREQTFE 86
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
K ++++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 87 KGKKRIKKIATALRI--PDYISDAASEWFRLALLNNFVQGRRSQNVLAACLYVACRKEKT 144
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
+LIDFS+ L I+VY LGA +L++ + L I L DPS+F+ F ++L
Sbjct: 145 HHMLIDFSSRLQISVYSLGATFLKMVKALQITK----LPLADPSLFIQHFVEKLDFREST 200
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M DWI GR+P+G+ GA + ++A + + + ++I+
Sbjct: 201 SKVIKDAVKLAQRMANDWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIV 250
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 38/160 (23%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D ++ S +F D+DD E+D +L E+E K+ +W +N ++L Q K
Sbjct: 422 DLLSKISSDPKDFEDLDDEELDQFLLTEDEYKLKERVWTGLNHDFLVNQEKKRLK----- 476
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ-------------------QKRAA 479
Q A EL + A K R++ + + A
Sbjct: 477 --------------QEADELTGNTSGATRKKRRQNKSPLDNIEGIGGDIVSEMGVSEAIA 522
Query: 480 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
SG +A ++ RRML+KK S KINY L LFDD+
Sbjct: 523 GIGESGEPLSAADSARRMLSKKAFSKKINYASLGDLFDDN 562
>gi|341899796|gb|EGT55731.1| CBN-BRF-1 protein [Caenorhabditis brenneri]
Length = 734
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 136/502 (27%), Positives = 199/502 (39%), Gaps = 135/502 (26%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFVRTIQSE 62
CS+C C CG VLE+ TE F + A G L G FV
Sbjct: 5 CSNCGSAEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFV------ 58
Query: 63 YGASRERLMEKAFDDM-----RQMKNALNIGESDEI----------VHVAKRFYGIAVAR 107
S ER F+ M R+M A DE+ ++ A F+ + V+R
Sbjct: 59 ---SAERAAANNFNGMGSQESREMTYAKGRKVVDELGSQLRINAHCMNTAFNFFKMCVSR 115
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N T+GR V A CLY+ CR ++ LL+DFS+ INV++LG + + L I
Sbjct: 116 NLTRGRNRSSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFISRALRIN--- 172
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DP +++ +F L G +K V + A ++ MKRDW++TGR+P+G+CGAAL +
Sbjct: 173 --LPSTDPCLYIMRFACVLDFGDRQKEVVNLATRLVQRMKRDWMSTGRRPTGICGAALLI 230
Query: 227 SALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNE-VLCKHKDTGKPFAC 285
+A + S SDI+ +V ++E V+ K D
Sbjct: 231 AARSMNFNRSISDIV-----------------------RVVHISESVIRKRLDEFSQTPS 267
Query: 286 GLCRSCYEEFMTISEGLEGGADPPAFQVAE---RERMVKASAEENSSF------------ 330
G +EF T+ LE DPPA++ A RE ++ AE+ +
Sbjct: 268 GSL--TIDEFSTVD--LEHSEDPPAYREARRKAREEQLRKEAEQADAMRDQLGEMEADVE 323
Query: 331 --------ERESDSPF-----------------MSRVDKVQS------------------ 347
E+ S SPF M R D + S
Sbjct: 324 AALDKKRKEKFSKSPFAKLISGGLGLEYAEAEEMVRKDVIASVMKAAEEEPCSSNTMEKF 383
Query: 348 ----PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYL 403
P ES+G+ ++ T TA E T+ P +D E I D E+D Y+
Sbjct: 384 DKYRPSLESLGIRRSVDTPTA----EHRSTEIPIIDLEDE----------ISDTEIDSYI 429
Query: 404 HNEEEKHYKKIIWEEMNREYLE 425
E E K W + N E ++
Sbjct: 430 LTESEVAIKTDYWMKANGEVMK 451
>gi|321468451|gb|EFX79436.1| hypothetical protein DAPPUDRAFT_304854 [Daphnia pulex]
Length = 638
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 151/561 (26%), Positives = 239/561 (42%), Gaps = 125/561 (22%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT--------IQSEYGA----SRE 68
+ C CG VLE++ +E F +NA G + G FV + I S G SRE
Sbjct: 23 VVCTNCGVVLEENCIVSEVQFEENAYGGASAIGQFVSSENQGGTGFINSYRGGNGKQSRE 82
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
M++A + + M LN+ + + +A FY +A+ R+ T GR++ A+C+Y+ CR
Sbjct: 83 ITMKRAREKITTMGQQLNLNQ--HCIDMAVNFYAMALTRHLTNGRKSSHTVAACIYITCR 140
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
+ LLID ++ ++I+VY LG ++Q+ + ++ + VDP +++ ++ +R+
Sbjct: 141 MEGTAHLLIDIADVIDIDVYTLGHNFMQIAKTFNLS-----IPSVDPCLYVMRYANRMNF 195
Query: 189 GG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMAR 247
G +V TA ++ MKRDWI TGR+PSGLCGAAL ++A HG + D+I R
Sbjct: 196 GDKTHEVSRTALRLVQRMKRDWIHTGRRPSGLCGAALLLAARFHGFNRTVVDVI-----R 250
Query: 248 KKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGAD 307
+ ++HE N V + ++ G+ + L EEFM + LE D
Sbjct: 251 EVKVHE----------------NTVRKRMQEFGETASSDL---SIEEFMQVD--LEEEHD 289
Query: 308 PPAF---QVAERERMV--KASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQ 362
PPA+ + +R ++ + S EE E+E + + K + P + K C
Sbjct: 290 PPAYLKSRKKDRTDIIEEEVSTEELVELEKEINRQIALNLAKKRGPYAKYAKAVKECL-- 347
Query: 363 TASNEGEGDHTKTPGVDATTEASD------------------------------------ 386
T S D P TT +D
Sbjct: 348 TPSEAAAVDVKSLPTARTTTSDTDESILMPPPGATYLQLRHHLRPSLASMGIFSGSVEKE 407
Query: 387 ------------GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
G + IDD E+D Y+ E E +W +N E+++E
Sbjct: 408 ELSKQEEAPPDSGELDLEGIDDSEMDSYIRTEYEVKMTSDMWMAINGEFMKE-------- 459
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
LEA Q + + RK K +R + SG T EA
Sbjct: 460 ------LEAK--------QKRKAEEEEEKQKRGEKRKRKTGRRQPQQSYSG--STPGEAI 503
Query: 495 RRMLTKKRLSSKINYDVLEKL 515
+ML KR+S+KINYD L+ L
Sbjct: 504 GKMLVGKRISNKINYDKLKDL 524
>gi|68487944|ref|XP_712189.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|68488941|ref|XP_711715.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|1174644|sp|P43072.1|TF3B_CANAL RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|619452|emb|CAA87398.1| TFIIB related subunit of TFIIIB (BRF1) [Candida albicans]
gi|46433036|gb|EAK92493.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|46433560|gb|EAK92996.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|238880004|gb|EEQ43642.1| hypothetical protein CAWG_01886 [Candida albicans WO-1]
Length = 553
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 132/255 (51%), Gaps = 28/255 (10%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 10 CKTC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 64
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + ++++ AL I D I A ++ +A+
Sbjct: 65 GADQARATFAGGRQNAMESREQTLSNGKRKIKRIAAALKI--PDYIAEAAGEWFRLALTL 122
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 123 NFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 180
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 181 --LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLL 238
Query: 227 SALTHGLKFSKSDII 241
+A + + S ++I+
Sbjct: 239 AARMNNFRRSHAEIV 253
>gi|241958762|ref|XP_002422100.1| tanscription factor TFIIIB subunit, putative; transcription factor
IIIB subunit, putative [Candida dubliniensis CD36]
gi|223645445|emb|CAX40101.1| tanscription factor TFIIIB subunit, putative [Candida dubliniensis
CD36]
Length = 553
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 132/255 (51%), Gaps = 28/255 (10%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 10 CKTC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 64
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + ++++ AL I D I A ++ +A+
Sbjct: 65 GADQARATFAGGRQNAMESREQTLSNGKRKIKRIAAALKI--PDYIAEAAGEWFRLALTL 122
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 123 NFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 180
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 181 --LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLL 238
Query: 227 SALTHGLKFSKSDII 241
+A + + S ++I+
Sbjct: 239 AARMNNFRRSHAEIV 253
>gi|328851991|gb|EGG01140.1| hypothetical protein MELLADRAFT_92647 [Melampsora larici-populina
98AG31]
Length = 649
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 56/316 (17%)
Query: 17 YDS---QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------------RTIQS 61
YDS + C CG V++++ ++ TF +++ G + L G + R
Sbjct: 17 YDSAAGNVVCTTCGYVVDENTIVSDVTFGESSNGAAVLQGAQLGATDLRARIVGPRGRPQ 76
Query: 62 EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
SR + +E ++ M + LN+ E I A RF+ +A++ F GRR+ V AS
Sbjct: 77 ASAESRAQTLENGLRNLLSMAHGLNLSEV--IAESAHRFFTLALSNGFVMGRRSPYVLAS 134
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
C+Y+ACR P +LID S++L +NV+ +GA YL+L + L + + +DPS+++ +
Sbjct: 135 CIYVACRMNKLPTMLIDISDFLQVNVFIVGATYLKLVKELCLTQ----IPLIDPSLYISR 190
Query: 182 FTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F L G +KV A ++ DWITTGR+PSG+ GA L ++A + K S +I
Sbjct: 191 FAALLEFGEETEKVAYDATRLVKRFDHDWITTGRRPSGIAGACLLIAARMNNFKRSVLEI 250
Query: 241 IEDF----MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFM 296
++ + KK L E K +TGK E+F
Sbjct: 251 VQVVKIADVTIKKRLDE--------------------FKRSETGK--------MTVEDFR 282
Query: 297 TISEGLEGGADPPAFQ 312
++ LE +PPAFQ
Sbjct: 283 --NQWLEEAENPPAFQ 296
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D+ SD+D+ E+D ++ NE E K +W E+NREYLE+ A K+ A + Y +
Sbjct: 454 DHLSDLDEDELDCFILNENEVEIKTRVWMELNREYLEKLAEKKEREATGEIKPTKKYASK 513
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
P+ AK R +++N G A + +KK+LSSKIN
Sbjct: 514 PK----------------AKPR---------DSENPGGATVGESVMNMINSKKKLSSKIN 548
Query: 509 YDVLEKLF 516
Y + + LF
Sbjct: 549 YKIADSLF 556
>gi|71003944|ref|XP_756638.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
gi|46095578|gb|EAK80811.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
Length = 765
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 138/264 (52%), Gaps = 34/264 (12%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C++C + D+Q C +CG VLE+ ++ TF +N+AG + + G+ + Q+
Sbjct: 3 CTNCGSSAIDY--ADNQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAGDQARA 60
Query: 63 ------------YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV----- 105
SR+ + A + M +AL I + A RF+ +A+
Sbjct: 61 RVSGPGGFRGGYVSESRDMTISNARTGINNMASALRI--PSHVADRALRFFTLALDGGAS 118
Query: 106 ------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+L +
Sbjct: 119 AATGEEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLKLIR 178
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 218
VL + L +DPSI++ +F L G +KV A +++ ++DWIT GR+P+G
Sbjct: 179 VLNLR-----LPLIDPSIYIARFAALLDFGEETQKVAYDASRLVSRFQKDWITEGRRPAG 233
Query: 219 LCGAALYVSALTHGLKFSKSDIIE 242
+CGA L ++A + + S S++I+
Sbjct: 234 ICGACLMLAARMNHFRRSVSEVIQ 257
>gi|417403827|gb|JAA48700.1| Putative transcription initiation factor tfiiib brf1 subunit
[Desmodus rotundus]
Length = 676
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 155/315 (49%), Gaps = 51/315 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+++ G S G FV ++ S + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPSLGSGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRQIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARK 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 198 EKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTI 246
Query: 249 KELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
KE+ V KV S + + L + +DT + +EFM I LE
Sbjct: 247 KEVISVV---------KVCESTLRKRLTEFEDTPT------SQLTVDEFMKID--LEEEC 289
Query: 307 DPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 290 DPPSYTAGQRKLRMK 304
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 27/132 (20%)
Query: 384 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 443
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 441 SGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK----- 495
Query: 444 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 503
EL KE++ K++ + + A TA EA +ML +KR+
Sbjct: 496 -------------ELGVY---------KEQKPKKSCKRREPIQASTAGEAIEKMLEQKRI 533
Query: 504 SSKINYDVLEKL 515
SSKINY VL L
Sbjct: 534 SSKINYSVLRDL 545
>gi|324502344|gb|ADY41032.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1028
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 147/563 (26%), Positives = 240/563 (42%), Gaps = 126/563 (22%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEYGASRERLMEKAF 75
C +CG VLE+ + T+ + + S L G F+ T G + E +
Sbjct: 24 CVKCGMVLEESAIVLDVTYQERSGAGSTLVGQFISHDHEQRHTFSGVPGLPHQEPREVTY 83
Query: 76 DDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
M+ K + I I + A F+ + V RNFT+GR V A+CLY+ CR ++
Sbjct: 84 --MKGKKLIVEIASQLRINQHCIDTAHNFFRMCVCRNFTRGRMRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-G 190
LL+DFS+ +NV+ELG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDVTQVNVFELGRTLNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEK 196
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
K+V A ++ MKRDWI TGR+P+GLCGAAL ++A + + DI+
Sbjct: 197 EKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTIGDIV--------- 247
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHK--DTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
+V ++E + + + + GK + L +EF + LE DP
Sbjct: 248 --------------RVVHISEAVVRKRLDEFGKTPSSSL---TIDEFAIVD--LENCEDP 288
Query: 309 PAFQVAER-----------------ERMVKASAEE-NSSFERESDSPFMSRV------DK 344
PAF+ + R E VK EE + ER+ F + D
Sbjct: 289 PAFRESRRRANEELKRKEEQKAKEIELEVKPLEEEVEKALERKRREKFKRTLYAKMLTDS 348
Query: 345 VQSPEPE---SIGVPKNCTTQTASNEGEGDHTKTPGVD--------------------AT 381
+ PE + + +N + A + GE G+ AT
Sbjct: 349 LVKESPELRLADAMIRNEIVEVAFDAGEERQRPLMGMSSRYAPTLESLGISDPLKPQPAT 408
Query: 382 TEAS-----DGSD--NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
+E + +G+D +F +IDD E+D Y+ + EE K +W ++N+E+L E +E
Sbjct: 409 SEHTGRSEENGNDELDFKEIDDDEIDTYILSREEAETKSRLWMKLNKEHLVEMELREQEG 468
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
A + + + +K K+ A+ K S A TA EA
Sbjct: 469 AERERGDDGIVR-----------------------KKRKKSTNIAKRKESIVASTAQEAI 505
Query: 495 RRMLTKKRLSSKINYDVLEKLFD 517
+++ +K+LS+KI+Y++L+++ D
Sbjct: 506 TKVIQEKKLSNKIDYEILKEVMD 528
>gi|430813871|emb|CCJ28823.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 452
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 124/451 (27%), Positives = 193/451 (42%), Gaps = 82/451 (18%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-----------SRERLM 71
C CG V+E++ +E TF + ++G + + G+FV QS SRE+ +
Sbjct: 23 CVSCGNVIEENVIVSEITFGEASSGAAIVQGSFVGADQSHARTNGPYRRQSSLESREQTI 82
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + AL++ E A R++ +AV NF +GRR++ V ASCLY+ CR +
Sbjct: 83 ANGRRRINALAAALHLSERHS--ETAVRYFTLAVTHNFIQGRRSQYVIASCLYIVCRLER 140
Query: 132 KPFLLIDFSNYLN--------------INVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+LIDFS+ L INV+ LG+ +L+L QVL+I L DPS+
Sbjct: 141 TSHMLIDFSDILQVNLILKNIYLIVNKINVFTLGSTFLKLVQVLHIT-----LPFADPSL 195
Query: 178 FLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
++ +F L G KV A ++ M RDW+ TGR+P+GL AA + +
Sbjct: 196 YITRFAALLEFGAETHKVATDAIRLVQRMNRDWMQTGRRPAGLLIAARMNNFRRSVEEVV 255
Query: 237 KSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFM 296
+ D RK+ L SG V ++F
Sbjct: 256 HVVKVGDLTVRKR---------LEEFKTTASGDLTV--------------------QDFR 286
Query: 297 TISEGLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE--- 349
TI LE DPP++ + R+R ++A NS E E D S + + E
Sbjct: 287 TI--WLEQTHDPPSYLQGKKKERRQRDIEAMEFLNSK-EHEIDILDASTTNYYHNKEKML 343
Query: 350 PESIGVPKNCTTQTASNEGEGD----------HTKTPGVDATTEASDGSDNFSDIDDFEV 399
P + + T+ N +G+ + + T + + SDIDD E+
Sbjct: 344 PLKLIETGDFVTELNDNFLKGEMESVLKDRDIQRMSMAIQETKKTGKYCETLSDIDDDEI 403
Query: 400 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 430
+ + +E E K +W E+NREYL Q K
Sbjct: 404 NQIILSEPEVLAKTRVWMELNREYLAAQEVK 434
>gi|440290064|gb|ELP83518.1| transcription factor IIIB 70 kDa subunit, putative [Entamoeba
invadens IP1]
Length = 545
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 197/455 (43%), Gaps = 62/455 (13%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C C H R + C+ CG VL+D + G+ +L+G +++
Sbjct: 23 CPEC--HSKNLRKENGSTICEDCGLVLDDCGALIAELQFDESGGRKRLAG-------TQF 73
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQ 119
G + R +D RQM+ +GE ++ + +R Y +A+ R TKGRR
Sbjct: 74 GETERR----RYDVERQMRAIRRVGEMLKMKSSDIESGERLYRVAMQRGITKGRRVAYSA 129
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+CLY+ CR++ LLIDF++ L+++V +LG ++ C+ L + L VDP ++L
Sbjct: 130 GACLYIICRRERTDHLLIDFADVLHVSVRKLGRTFIHFCKELKLD-----LPFVDPCLYL 184
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F + L V TA I M RDW+ GR+PSG+CG ALY++ H + +
Sbjct: 185 QRFGEDLAFEKTADVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHNEPRTLEE 244
Query: 240 IIE-------DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP-FACGLCRSC 291
I+ R KE +A+L + +NE P + +
Sbjct: 245 IVHVVRLSTTTVRVRLKEFLRTPSADLT-----LEQLNEEDTSTTHCNPPSYTQNRLKDK 299
Query: 292 YEEFMTISEGLEGGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQS--- 347
E + GA+ P + +R+R + A E+ E + V+K+
Sbjct: 300 AREVV--------GANVP---LKKRKRNCDEYEAAEDKKLTEEIATLIGGEVEKIMGCKN 348
Query: 348 --PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GSDNFSDIDDF 397
+P ++G + + + EGE D K D +E D G D F
Sbjct: 349 IDEKPINLGSLEGKSAKDVGLEGEKFDVEKLVDVQKIKEDDFESEGVDEGECQVGDCAAF 408
Query: 398 --EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 430
E+DGY ++ E +K IWEE+N E+LE++ +
Sbjct: 409 DSELDGYFLDDTEAEKRKQIWEELNAEFLEKEKKR 443
>gi|323508031|emb|CBQ67902.1| related to BRF1-TFIIIB subunit, 70 kD [Sporisorium reilianum SRZ2]
Length = 775
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 140/268 (52%), Gaps = 42/268 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C++C + D+Q C +CG VLE+ ++ TF +N+AG + + G+ + Q+
Sbjct: 3 CTNCGSSAIDY--ADNQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAADQARA 60
Query: 63 ------------YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR---FYGIAV-- 105
SRE + A + M +AL I HVA R F+ +A+
Sbjct: 61 RVSGPGGFRGGYVSESREMTISNARIGINNMASALRIPS-----HVADRSLRFFTLALDG 115
Query: 106 ---------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+
Sbjct: 116 GASAATGDEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLK 175
Query: 157 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKRDWITTGR 214
L +VL + L +DPSI++ +F LL G +KV A +++ ++DW+T GR
Sbjct: 176 LIRVLNLR-----LPLIDPSIYIARFA-ALLDFGEETQKVAYDASRLVSRFQKDWLTEGR 229
Query: 215 KPSGLCGAALYVSALTHGLKFSKSDIIE 242
+P+G+CGA L ++A + + S S++I+
Sbjct: 230 RPAGICGACLMLAARMNHFRRSVSEVIQ 257
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D+ +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 504 DDLADLDEEELDRFILSPEEVKIKERVWMEFNKDWMEQMLKKQLK--------------- 548
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
L+ Q++ + + K K+ K +A + +A E+ + ML +K+ S KIN
Sbjct: 549 ---LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHNTSAAESAKMMLKQKQFSKKIN 601
Query: 509 YDVLEKLF 516
YD L LF
Sbjct: 602 YDALNNLF 609
>gi|388852063|emb|CCF54239.1| related to BRF1-TFIIIB subunit, 70 kD [Ustilago hordei]
Length = 760
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 34/264 (12%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C++C + ++Q C +CG VLE+ ++ TF +N+AG + + G+ + Q+
Sbjct: 3 CTNCGSSAIDY--ANNQAVCSQCGVVLEESQIVSDITFGENSAGGAVIQGSMISADQARA 60
Query: 63 ------------YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV----- 105
SRE + A + M +AL I A RF+ +A+
Sbjct: 61 RVSGPGGFRGGYVSESREMTISNARIGINNMASALRI--PSHAADRALRFFTLALDGGAS 118
Query: 106 ------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+L +
Sbjct: 119 AATGDEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLKLIR 178
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 218
VL + L +DPSI++ +F L G +KV A +++ ++DWIT GR+P+G
Sbjct: 179 VLNLR-----LPLIDPSIYIARFAALLDFGEETQKVAYDASRLVSRFQKDWITEGRRPAG 233
Query: 219 LCGAALYVSALTHGLKFSKSDIIE 242
+CGA L ++A + + S S+II+
Sbjct: 234 ICGACLMLAARMNHFRRSVSEIIQ 257
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D+ +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 498 DDLADLDEEELDRFILSPEEVKIKERVWMEFNKDWMEQTLKKQLK--------------- 542
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
L+ Q++ + + K K+ K +A + +A E+ + ML +K+ S KIN
Sbjct: 543 ---LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHNTSAAESAKMMLKQKQFSKKIN 595
Query: 509 YDVLEKLF 516
YD L LF
Sbjct: 596 YDALNNLF 603
>gi|242783999|ref|XP_002480298.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218720445|gb|EED19864.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 18/228 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS------------RER 69
C+ CG V+ + + +E +F + +AG + + G++V Q+ +S RE
Sbjct: 93 VCETCGAVVSEDHLVSEISFGETSAGAAVVQGSYVGADQTHTRSSGPGFHRGGGMESREI 152
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ ++QM AL+I ES + A + + +AV NF +GRRT+ V A CLY+ACR
Sbjct: 153 TEQNGARYIQQMALALDIPESAQ--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRR 210
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +LID S+ L INV+++G Y L + L + + VDP + +F R L
Sbjct: 211 QPGNTVMLIDLSDVLMINVFKVGRAYKMLLEELRLGGTVFTMNPVDPENLILRFA-RQLE 269
Query: 189 GGNKK--VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
GNK V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 270 FGNKTMHVAKEAARIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 317
>gi|294660130|ref|XP_462571.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
gi|199434484|emb|CAG91084.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
Length = 583
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG--------ASRERLME 72
+ C RCG V ++ +E F ++++G + + G V Q+ SRE+ +
Sbjct: 28 ISCSRCGTVQVENPIVSEVQFGESSSGAAMVQGAMVGADQARATFNGRQNAMESREQTLA 87
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+R++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 88 NGKKKIRRIATALKI--PDYIADAAGAWFRLALTNNFVQGRRSQNVLAACLYVACRKEKT 145
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
+LIDFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L N
Sbjct: 146 HHMLIDFSSRLQISVYSLGATFLKMVKTLHITS----LPLADPSLFIQHFAEKLNFRDQN 201
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M DWI GR+P+G+ GA + ++A + + + ++I+
Sbjct: 202 SKVIKDAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRTHAEIV 251
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 45/164 (27%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D ++ S F D+DD E+D +L E+E K+ +W +N +++ Q K
Sbjct: 435 DLLSKISSDPKEFDDLDDSELDHFLLTEDEYKLKERLWTGLNHDFIVAQEKKRLK----- 489
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN--------------- 483
Q EL + A +RK+++Q + + +
Sbjct: 490 --------------QETDELTGNTSGA---NRKKRRQGKNSGVEGIDGDFVNEMGINDAL 532
Query: 484 --------SGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
+G TA ++ +RML+KK S KINY L LFDD+
Sbjct: 533 TGIGVDEATGEPLTAADSAKRMLSKKSFSKKINYATLGDLFDDN 576
>gi|195144240|ref|XP_002013104.1| GL23944 [Drosophila persimilis]
gi|194102047|gb|EDW24090.1| GL23944 [Drosophila persimilis]
Length = 665
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 156/335 (46%), Gaps = 56/335 (16%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCTNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMVDVIGVVKI 256
Query: 247 RKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 304
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 257 HESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LER 288
Query: 305 GADPPAFQVA---ERERMVKASAEENSSFERESDS 336
DPP+F+ A +RER+ E + ++E D+
Sbjct: 289 EQDPPSFRAARKKDRERIKDMGEHELTELQKEIDA 323
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 29/127 (22%)
Query: 391 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 450
D++D E+D Y+ E+E K +W+ MN EYL+EQ ++
Sbjct: 437 IDDLNDDELDQYVLTEDEAVTKLEMWKNMNAEYLQEQKERD------------------- 477
Query: 451 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 510
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 478 -----ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYD 527
Query: 511 VLEKLFD 517
+L+ L D
Sbjct: 528 ILKTLTD 534
>gi|321260370|ref|XP_003194905.1| transcription factor iiib 70 kd subunit [Cryptococcus gattii WM276]
gi|317461377|gb|ADV23118.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
gattii WM276]
Length = 696
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 17/219 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR---------ERLM 71
+ C RCG+++E+ +E F ++A G+ + G FV + SR E +
Sbjct: 24 IVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATGVAGSRGGRGGQQNIENIK 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + + +++ S I A RF+ +AV F +GR+T+ + ASCLYL CR K
Sbjct: 84 AQGASRIEALSRQMHL--SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
+LIDFS + INV+ELGA YL+L L + D + +VDP+I+ +F RL G
Sbjct: 142 DAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQ 198
Query: 191 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
N D +R ++ + DW+T GR+P+G+CGA L ++
Sbjct: 199 VNTVAADASR-LVRRFRADWMTQGRRPAGVCGACLIIAG 236
>gi|330038667|ref|XP_003239664.1| TFIIB related factor hBRF [Cryptomonas paramecium]
gi|327206588|gb|AEA38766.1| TFIIB related factor hBRF [Cryptomonas paramecium]
Length = 385
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 30/292 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C+ C ++ ++ +S+ C CG ++E+++ +E N + L N ++ +
Sbjct: 3 CNKCNKNSIDYQFINSKTLCKSCGTMVEEYHLISE-----NYSDCLNLKNNKIKNFLQKK 57
Query: 64 GASRERLMEKA-------FDDMRQMKNALNIGESDEIVH-VAKRFYGIAVARNFTKGRRT 115
+S L E + R++ +N+ + D A R + R + +
Sbjct: 58 TSSS--LFETSNLADIIPLSAKRKIAQIVNLLKLDSTFQEYAYRLFLFVFQRGIIRKYKL 115
Query: 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDP 175
C+Y+ CR K P+LLIDFS + + +LGA++L++ + D + L +DP
Sbjct: 116 LITCICCVYVVCRYKKAPYLLIDFSEIVQTQLNKLGAIFLKI-----VRDLNIFLPIIDP 170
Query: 176 SIFLHKFTDRLLPGGNKK--VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
S+F+HKF L GNK + TA +++ MKRDWI+TGRKPSGLCGAAL +S+ HGL
Sbjct: 171 SLFVHKFATNL-QFGNKTNAITKTALRLVSKMKRDWISTGRKPSGLCGAALLISSCMHGL 229
Query: 234 KFSKSDI-----IEDFM--ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 278
K SK +I I DF +R +E+ + + +NL + ++ C D
Sbjct: 230 KRSKKEIEEVVKIGDFTLGSRLREIDKTLLSNLNITQINLKNFKQINCSSND 281
>gi|134113394|ref|XP_774722.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257366|gb|EAL20075.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 694
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 17/219 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR---------ERLM 71
+ C RCG+++E+ +E F ++A G+ + G FV + SR E +
Sbjct: 24 IVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATGVAGSRGGRGGQQNIENIK 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + + +++ S I A RF+ +AV F +GR+T+ + ASCLYL CR K
Sbjct: 84 AQGASRIEALSRQMHL--SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
+LIDFS + INV+ELGA YL+L L + D + +VDP+I+ +F RL G
Sbjct: 142 DAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQ 198
Query: 191 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
N D +R ++ + DW+T GR+P+G+CGA L ++
Sbjct: 199 VNTVAADASR-LVRRFRADWMTQGRRPAGVCGACLIIAG 236
>gi|198451369|ref|XP_001358335.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
gi|198131458|gb|EAL27473.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
Length = 665
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 156/335 (46%), Gaps = 56/335 (16%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCTNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMVDVIGVVKI 256
Query: 247 RKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 304
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 257 HESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LER 288
Query: 305 GADPPAFQVA---ERERMVKASAEENSSFERESDS 336
DPP+F+ A +RER+ E + ++E D+
Sbjct: 289 EQDPPSFRAARKKDRERINNIGEHELTELQKEIDA 323
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 29/127 (22%)
Query: 391 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 450
D++D E+D Y+ E+E K +W+ MN EYL+EQ ++
Sbjct: 437 IDDLNDDELDQYVLTEDEAVSKLEMWKNMNAEYLQEQKERD------------------- 477
Query: 451 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 510
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 478 -----ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYD 527
Query: 511 VLEKLFD 517
+L+ L D
Sbjct: 528 ILKTLTD 534
>gi|58268656|ref|XP_571484.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227719|gb|AAW44177.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 691
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 17/219 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR---------ERLM 71
+ C RCG+++E+ +E F ++A G+ + G FV + SR E +
Sbjct: 24 IVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATGVAGSRGGRGGQQNIENIK 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + + +++ S I A RF+ +AV F +GR+T+ + ASCLYL CR K
Sbjct: 84 AQGASRIEALSRQMHL--SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
+LIDFS + INV+ELGA YL+L L + D + +VDP+I+ +F RL G
Sbjct: 142 DAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQ 198
Query: 191 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
N D +R ++ + DW+T GR+P+G+CGA L ++
Sbjct: 199 VNTVAADASR-LVRRFRADWMTQGRRPAGVCGACLIIAG 236
>gi|194900456|ref|XP_001979773.1| GG16780 [Drosophila erecta]
gi|190651476|gb|EDV48731.1| GG16780 [Drosophila erecta]
Length = 668
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 167/357 (46%), Gaps = 52/357 (14%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVV-- 254
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
++HE S + + L + +T + GL EEFMT+ LE
Sbjct: 255 ---KIHE-------------STLRKRLSEFAETP---SGGL---TLEEFMTVD--LEREQ 290
Query: 307 DPPAFQVA---ERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCT 360
DPP+F+ A +RER+ E + ++E D+ + K + + K CT
Sbjct: 291 DPPSFKAARKKDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGKGCT 347
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D++D E+D Y+ E+E K +W+ +N EYL+EQ +E
Sbjct: 438 DLNDDELDQYVLTEDEALAKFEMWKNLNAEYLQEQKEREER------------------- 478
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 509
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 510 DVLEKLFD 517
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|405121456|gb|AFR96225.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. grubii H99]
Length = 684
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 17/219 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR---------ERLM 71
+ C RCG+++E+ +E F ++A G+ + G FV + SR E +
Sbjct: 24 IVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATGVAGSRGGRGGQQNIENIK 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + + +++ S I A RF+ +AV F +GR+T+ + ASCLYL CR K
Sbjct: 84 AQGASRIEALSRQMHL--SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
+LIDFS + INV+ELGA YL+L L + D + +VDP+I+ +F RL G
Sbjct: 142 DAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQ 198
Query: 191 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
N D +R ++ + DW+T GR+P+G+CGA L ++
Sbjct: 199 VNIVAADASR-LVRRFRADWMTQGRRPAGVCGACLIIAG 236
>gi|407042182|gb|EKE41189.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
nuttalli P19]
Length = 546
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 196/456 (42%), Gaps = 64/456 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS C T R L C+ CG V+++ + G+ L+G +++
Sbjct: 23 CSYCGG--TEFRNEQGSLICENCGLVIDNSRALIAELQFDESGGKKILAG-------TQF 73
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQ 119
G + + K +D RQM+ +GE ++ + +R Y +A+ TKGR+
Sbjct: 74 GETEK----KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSA 129
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+CLY+ CR++ LLIDF++ L+++V LG +++ C+ L L VDP ++L
Sbjct: 130 GACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYL 184
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F + L V TA I M RDW+ GR+PSG+CG ALY++ HG + +
Sbjct: 185 QRFGEDLAFEKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEE 244
Query: 240 IIE-------DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 292
I+ R KE +A+L + +NE D P C
Sbjct: 245 IVHVVRLSTTTVRVRLKEFLRTPSADLT-----LEQLNE-----DDQSTP-------HCN 287
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKAS---AEENSSFERESDSPFMSRVDKVQS-- 347
T++ + + V ++R A E+ E ++ V K+
Sbjct: 288 PPSYTLNRLKDKARETVGANVPLKKRKGNGDEYEAAEDKKLTEEIETLIGGEVSKIMGCK 347
Query: 348 ---PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GSDNFSDIDD 396
+P ++G + + + EGE D K D +E D G D +
Sbjct: 348 DIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGIDEGECVVGDCSE 407
Query: 397 F--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 430
F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 408 FDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|195501939|ref|XP_002098010.1| GE24172 [Drosophila yakuba]
gi|194184111|gb|EDW97722.1| GE24172 [Drosophila yakuba]
Length = 666
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 156/335 (46%), Gaps = 56/335 (16%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKI 256
Query: 247 RKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 304
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 257 HESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LER 288
Query: 305 GADPPAFQVA---ERERMVKASAEENSSFERESDS 336
DPP+F+ A +RER+ E + ++E D+
Sbjct: 289 EQDPPSFKAARKKDRERIKDMGEHELTELQKEIDA 323
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D++D E+D Y+ E+E K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEDEAVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 509
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 510 DVLEKLFD 517
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|212527540|ref|XP_002143927.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces marneffei ATCC 18224]
gi|210073325|gb|EEA27412.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces marneffei ATCC 18224]
Length = 744
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 16/227 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS------------RER 69
C+ CG V+ + +E +F + +AG + + G++V Q+ +S RE
Sbjct: 90 VCETCGAVVSEDTLVSEISFGETSAGAAVVQGSYVGADQTHTRSSGPGFHRGGGMESREI 149
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ ++QM AL+I ES + A + + +AV NF +GRRT+ V A CLY+ACR
Sbjct: 150 TEQNGARYIQQMALALDIPESAQ--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRR 207
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +LID S+ L INV+++G Y L + L + + VDP + +F +L
Sbjct: 208 QPGNTVMLIDLSDVLMINVFKVGRAYKMLLEELRLGGTVFTMNPVDPENLILRFAKQLEF 267
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
G V A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 268 GNRTMHVAKEAARIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 314
>gi|195349135|ref|XP_002041102.1| GM15370 [Drosophila sechellia]
gi|194122707|gb|EDW44750.1| GM15370 [Drosophila sechellia]
Length = 356
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 158/337 (46%), Gaps = 58/337 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------SR 67
C CG VLED +E F + G + + G FV + +S GA SR
Sbjct: 26 CMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHSLCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKI 256
Query: 247 RKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 304
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 257 HESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LER 288
Query: 305 GADPPAFQVA---ERERMVKASAEENSSFERESDSPF 338
DPP+F+ A +RER+ E + ++E D+
Sbjct: 289 EQDPPSFKAARKKDRERIKDWGEHELTELQKEIDAHL 325
>gi|67469641|ref|XP_650799.1| transcription initiation factor IIIB chain BRF [Entamoeba
histolytica HM-1:IMSS]
gi|56467455|gb|EAL45413.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449709301|gb|EMD48588.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica KU27]
Length = 546
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 196/456 (42%), Gaps = 64/456 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS C T R L C+ CG V+++ + G+ L+G +++
Sbjct: 23 CSYCGG--TEFRNEQGSLICENCGLVIDNSRALIAELQFDESGGKKILAG-------TQF 73
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQ 119
G + + K +D RQM+ +GE ++ + +R Y +A+ TKGR+
Sbjct: 74 GETEK----KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSA 129
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+CLY+ CR++ LLIDF++ L+++V LG +++ C+ L L VDP ++L
Sbjct: 130 GACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYL 184
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F + L V TA I M RDW+ GR+PSG+CG ALY++ HG + +
Sbjct: 185 QRFGEDLSFEKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEE 244
Query: 240 IIE-------DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 292
I+ R KE +A+L + +NE D P C
Sbjct: 245 IVHVVRLSTTTVRVRLKEFLRTPSADLT-----LEQLNE-----DDQSTP-------HCN 287
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKAS---AEENSSFERESDSPFMSRVDKVQS-- 347
T++ + + V ++R A E+ E ++ V K+
Sbjct: 288 PPSYTLNRLKDKARETVGANVPLKKRKGNGDEYEAAEDKKLTEEIETLIGGEVSKIMGCK 347
Query: 348 ---PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GSDNFSDIDD 396
+P ++G + + + EGE D K D +E D G D +
Sbjct: 348 DIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGIDEGECVVGDCSE 407
Query: 397 F--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 430
F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 408 FDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|167389091|ref|XP_001738814.1| transcription factor IIIB 60 kDa subunit [Entamoeba dispar SAW760]
gi|165897805|gb|EDR24877.1| transcription factor IIIB 60 kDa subunit, putative [Entamoeba
dispar SAW760]
Length = 546
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 117/453 (25%), Positives = 196/453 (43%), Gaps = 58/453 (12%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS C T R L C+ CG V+++ + G+ L+G +++
Sbjct: 23 CSYCGG--TEFRNEQGSLICENCGLVIDNSRALIAELQFDESGGKKILAG-------TQF 73
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQ 119
G + + K +D RQM+ +GE ++ + +R Y +A+ TKGR+
Sbjct: 74 GETEK----KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSA 129
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+CLY+ CR++ LLIDF++ L+++V LG +++ C+ L L VDP ++L
Sbjct: 130 GACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYL 184
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F + L V TA I M RDW+ GR+PSG+CG ALY++ HG + +
Sbjct: 185 QRFGEDLAFEKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEE 244
Query: 240 IIE-------DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 292
I+ R KE +A+L + C P + L R
Sbjct: 245 IVHVVRLSTTTVRVRLKEFLRTPSADLTLEQLNEDDQSTTHC------NPPSYTLNRLKD 298
Query: 293 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS----- 347
+ T+ GA+ P + + + A E+ E ++ V K+
Sbjct: 299 KARETV------GANVPLKK--RKGNGDEYEAAEDKKLTEEIETLIGGEVSKIMGCKDID 350
Query: 348 PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GSDNFSDIDDF-- 397
+P ++G + + + EGE D K D +E D G D +F
Sbjct: 351 SKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGVDEGECAVGDCSEFDN 410
Query: 398 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 430
E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 411 ELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|449278527|gb|EMC86349.1| Transcription factor IIIB 90 kDa subunit, partial [Columba livia]
Length = 536
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 165/325 (50%), Gaps = 48/325 (14%)
Query: 45 AAGQS-QLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGI 103
AG++ L G F + E SR + ++ + + N L + + + A F+ +
Sbjct: 3 GAGKTPTLGGGFHANLGKE---SRAQTLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKM 57
Query: 104 AVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I
Sbjct: 58 AVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI 117
Query: 164 ADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGA 222
+ +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGA
Sbjct: 118 NAPA-----IDPCLYIPRFAHMLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGA 172
Query: 223 ALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTG 280
AL V+A H DF KE+ V KV S + + L + +DT
Sbjct: 173 ALLVAARMH-----------DFRRTVKEVIRVV---------KVCESTLRKRLTEFEDT- 211
Query: 281 KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAER----ERMVKASAEENSSFERESDS 336
P + + +EFM I LE DPP+F +R +++ KA +++ FE E S
Sbjct: 212 -PTS----QLTIDEFMKID--LEEECDPPSFTAGQRKLKIQQLEKALSKKLEDFEGEISS 264
Query: 337 PFMSRVD-KVQSPEPESIGVPKNCT 360
+ ++ ++++ P++ GV N T
Sbjct: 265 -YQDEIEIELENSRPKAKGVFANFT 288
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 345 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 404
V+ P ES+ P E + T + DG + S IDD E+D Y+
Sbjct: 348 VRPPALESLLGPLPTAASLGITESIKECISTKDQEPDENTGDGELDLSGIDDSEIDRYIL 407
Query: 405 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 464
NE E K +W + N +YL+EQ KEA A K EL
Sbjct: 408 NETEAQIKAELWMKENADYLKEQKEKEARIAKEK------------------ELGIY--- 446
Query: 465 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KE + K++A+ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 447 ------KEHKPKKSAKKREPIQASTAGEAIEKMLEQKKISSKINYNVLRDL 491
>gi|67525317|ref|XP_660720.1| hypothetical protein AN3116.2 [Aspergillus nidulans FGSC A4]
gi|40744511|gb|EAA63687.1| hypothetical protein AN3116.2 [Aspergillus nidulans FGSC A4]
gi|259485934|tpe|CBF83378.1| TPA: transcription factor TFIIIB complex subunit Brf1, putative
(AFU_orthologue; AFUA_3G12730) [Aspergillus nidulans
FGSC A4]
Length = 713
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 31/219 (14%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDD 77
D Q C CG V+ + N +E TF ++A+G + + G+FV Q+ + AS+
Sbjct: 71 DGQKVCSGCGTVVSEANIVSEVTFGESASGAAIVQGSFVGEDQT-HSASK---------- 119
Query: 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 136
A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 120 ------------------AAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 161
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 195
IDF++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 162 IDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVA 221
Query: 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
A I+ M RDW+TTGR+P+G+CGAAL ++A + +
Sbjct: 222 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFR 260
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L E K+ IW N++YL Q AK A K ALE + + G +
Sbjct: 461 DPEVSNCLLAPHEVEIKERIWVHENKDYLRTQQAK-----ALKRALEEA--DAQPGDRKP 513
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
++ V E + + S PA EATRRML ++ S KINY +LE L
Sbjct: 514 RKRRKGRLGDVRYLEGEGEDGDGRSTRASTPA----EATRRMLERRGFSKKINYRLLETL 569
Query: 516 F 516
F
Sbjct: 570 F 570
>gi|195570167|ref|XP_002103080.1| GD20238 [Drosophila simulans]
gi|194199007|gb|EDX12583.1| GD20238 [Drosophila simulans]
Length = 662
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 156/335 (46%), Gaps = 56/335 (16%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHSLCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKI 256
Query: 247 RKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 304
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 257 HESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LER 288
Query: 305 GADPPAFQVA---ERERMVKASAEENSSFERESDS 336
DPP+F+ A +RER+ E + ++E D+
Sbjct: 289 EQDPPSFKAARKKDRERIKDMGEHELTELQKEIDA 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 509
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 510 DVLEKLFD 517
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|194743354|ref|XP_001954165.1| GF16885 [Drosophila ananassae]
gi|190627202|gb|EDV42726.1| GF16885 [Drosophila ananassae]
Length = 665
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 161/353 (45%), Gaps = 56/353 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C + C CG VLED +E F + G + + G FV S
Sbjct: 7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGG 65
Query: 62 --EYG----------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
YG SRE ++KA D+ + L S A F+ +A++R+
Sbjct: 66 ATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHL 123
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL+L L I
Sbjct: 124 TRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN----- 178
Query: 170 LKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
+ VDP +++ +F +RL G +V TA I+ MK+D + +GR+P+GLCGAAL ++A
Sbjct: 179 IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAA 238
Query: 229 LTHGLKFSKSDIIEDFMARKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACG 286
H + D+I + L + ++ A P+ G +
Sbjct: 239 RMHDFNRTLLDVIGVVKIHESTLRKRLSEFAETPSGGLTL-------------------- 278
Query: 287 LCRSCYEEFMTISEGLEGGADPPAFQVA---ERERMVKASAEENSSFERESDS 336
EEFMT+ LE DPP+F+ A +RER+ +E + +++ D+
Sbjct: 279 ------EEFMTVD--LEREQDPPSFKAARKKDRERIKDIGEQELTELQKQIDA 323
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 29/125 (23%)
Query: 391 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 450
D++D E+D Y+ EEE K +W+ +N EYL EQ +E A K E
Sbjct: 436 IEDLNDDELDQYVLTEEEAVSKLDMWKNLNAEYLREQQEREERLA----------KEREE 485
Query: 451 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 510
G ++ GP+ TA EA +ML +K++SSKINY+
Sbjct: 486 GKPERKKRKPRKKVI-------------------GPSSTAGEAIEKMLQEKKISSKINYE 526
Query: 511 VLEKL 515
+L+ L
Sbjct: 527 ILKTL 531
>gi|195110647|ref|XP_001999891.1| GI22827 [Drosophila mojavensis]
gi|193916485|gb|EDW15352.1| GI22827 [Drosophila mojavensis]
Length = 671
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 164/341 (48%), Gaps = 52/341 (15%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G S + G FV S YG SR
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEMGHGASAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L + A F+ +A+ R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LTQHYADTALNFFKMALHRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H +FS++ I D +
Sbjct: 197 LGPKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMH--EFSRT--IADVIG 252
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
K +HE S + + L + +T + GL EEFMT+ LE
Sbjct: 253 VVK-IHE-------------STLRKRLSEFAETP---SGGL---TLEEFMTVD--LEREQ 290
Query: 307 DPPAFQVA---ERERMVKASAEENSSFERESDSPFMSRVDK 344
DPP+F+ A +RE + E + ++E D+ + K
Sbjct: 291 DPPSFRAARIKDRELIQNMGVHELTELQKEIDAHLEKDIGK 331
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 29/132 (21%)
Query: 391 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 450
D++D E+D Y+ EE K +W+ +N E+L EQ +E A + + K
Sbjct: 443 IDDLNDEELDQYVLTAEEADTKLSMWKNLNAEFLREQKEREERMAKEREEGKPEKKKRKP 502
Query: 451 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 510
+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 503 RKKVI-----------------------------GPSSTAGEAIEKMLQEKKISSKINYD 533
Query: 511 VLEKLFDDSVCL 522
+L+ L + CL
Sbjct: 534 ILKTLTEGMGCL 545
>gi|24647658|ref|NP_650616.2| Brf, isoform A [Drosophila melanogaster]
gi|281361961|ref|NP_001163636.1| Brf, isoform B [Drosophila melanogaster]
gi|15291933|gb|AAK93235.1| LD32109p [Drosophila melanogaster]
gi|23171547|gb|AAF55409.2| Brf, isoform A [Drosophila melanogaster]
gi|220945996|gb|ACL85541.1| Brf-PA [synthetic construct]
gi|272477027|gb|ACZ94932.1| Brf, isoform B [Drosophila melanogaster]
Length = 662
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 157/336 (46%), Gaps = 58/336 (17%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A+ R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + +DP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSLDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ARKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LE 287
Query: 304 GGADPPAFQVA---ERERMVKASAEENSSFERESDS 336
DPP+F+ A +RER+ E + ++E D+
Sbjct: 288 REQDPPSFKAARKKDRERIKDMGEHELTELQKEIDA 323
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 509
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 510 DVLEKLFD 517
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|164660340|ref|XP_001731293.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
gi|159105193|gb|EDP44079.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
Length = 660
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 31/249 (12%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ------------SEYGA 65
DSQ C CG VLE+ ++ TF +N AG + + G+++ Q S G
Sbjct: 15 DSQAVCSACGVVLEESQIVSDITFAENTAGGAVVQGSYLGADQVRARTSAPGFRGSSAGE 74
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV-----------ARNFTKGRR 114
SRE + A ++ +M A G + A RF+ +A+ RNF GR+
Sbjct: 75 SRECTIANARWNINRMATAR--GVPAHVAERALRFFQLALDGGTATATGSQPRNFVLGRK 132
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
++ ASCLY+ACR +LIDF++ + +NV+ LG YL+L +VL + + +D
Sbjct: 133 SDYTVASCLYVACRMAKTTHMLIDFADVIQVNVFVLGRSYLRLLRVLNLQ-----IPLID 187
Query: 175 PSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS ++ +F L G ++V A ++ K DW+ GR+P+G+CGA L ++A +
Sbjct: 188 PSFYISRFAALLEFGDETQRVVTDATRLVTRFKMDWMVEGRRPAGICGACLLLAARMNHF 247
Query: 234 KFSKSDIIE 242
+ S ++I++
Sbjct: 248 RRSITEIVQ 256
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 25/115 (21%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
+L +EE K+ +W E N++YLE AA A + LEA K A
Sbjct: 483 FLLTDEEVKVKERVWMEFNKDYLE-------AALARQLKLEADQK--------------A 521
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
A +SRK + + A P +A E+ ++M+ +KR S +INYDVL LF
Sbjct: 522 GIAPAPRSRKRHKPRDGTTA----PTSSAAESAKQMMQQKRWSRRINYDVLNSLF 572
>gi|395504300|ref|XP_003756493.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Sarcophilus harrisii]
Length = 619
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 132/259 (50%), Gaps = 38/259 (14%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SR + ++ + + N L + + + A F+ +AV+++ T+GR+ V A+CLYL
Sbjct: 19 SRAQTLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYL 76
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F
Sbjct: 77 VCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHM 131
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244
L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 132 LEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DF 180
Query: 245 MARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 302
KE+ V KV S + + L + +DT + +EFM I L
Sbjct: 181 RRTVKEVIRVV---------KVCESTLRKRLTEFEDTPT------SQLTIDEFMKID--L 223
Query: 303 EGGADPPAFQVAERERMVK 321
EG DPP+F +R+ +K
Sbjct: 224 EGECDPPSFIAGQRKLKIK 242
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 342 VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG 401
+D ++ P E++ P E + + + DG + + IDD E+D
Sbjct: 342 IDPIKPPALETLLGPLPTAASLGITESIRECISPQNREPNENSGDGELDLNGIDDSEIDR 401
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
Y+ NE E K +W + + +Y++EQ KEA A K EL
Sbjct: 402 YILNENEAQIKAELWMKEHADYVKEQKEKEARIAKEK------------------ELGIY 443
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KE + K++++ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 444 ---------KEHKPKKSSKKREPIQASTAGEAIEKMLEQKKISSKINYNVLRDL 488
>gi|406860061|gb|EKD13121.1| Brf1-like TBP-binding domain-containing protein [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 964
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 17/241 (7%)
Query: 14 HRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY--- 63
H P C CG V++D N +E TF +N+AG + + G+FV RTI +
Sbjct: 56 HDPDIQDGICHNCGFVVDDSNIVSEITFGENSAGGAVVQGSFVSADQGGARTIGPGFKRG 115
Query: 64 -GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
G +RE + + + ++ M L I ES + + + +A NF +GRR EQV A C
Sbjct: 116 GGDNRENTLREGRNAIQGMGAQLGIRES--TIQNGVQIFKLAAMNNFIQGRRMEQVAAVC 173
Query: 123 LYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
LY ACR+ S +LIDF++ + NV++LG + +L + IA ++ V P + +
Sbjct: 174 LYSACRKDSPCRIMLIDFADLVQTNVFKLGYTFKKLHDTIAIAKAG--IQPVLPEDLIFR 231
Query: 182 FTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F +L G KV + A ++ M DW+ GR+PSG+CGA L ++A + + + +++
Sbjct: 232 FAQKLEFGNQMTKVAEDAVRMVQRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTITEV 291
Query: 241 I 241
+
Sbjct: 292 V 292
>gi|8099214|gb|AAF72066.1|AF262375_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 157/336 (46%), Gaps = 58/336 (17%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A+ R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + +DP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSLDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ARKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LE 287
Query: 304 GGADPPAFQVA---ERERMVKASAEENSSFERESDS 336
DPP+F+ A +RER+ E + ++E D+
Sbjct: 288 REQDPPSFKAARKKDRERIKDMGEHELTELQKEIDA 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 509
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 510 DVLEKLFD 517
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|160331383|ref|XP_001712399.1| tfIIB-brf [Hemiselmis andersenii]
gi|159765847|gb|ABW98074.1| tfIIB-brf [Hemiselmis andersenii]
Length = 408
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 141/270 (52%), Gaps = 23/270 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C C + ++ C CG +LE++ + E TF L+G FVR
Sbjct: 3 CIKCGGGEINFNFTEGKIICKFCGLLLEENISNPEITFEGKDKKNFSLNGQFVRNSNINS 62
Query: 64 GASRER----LMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ++ A + Q+ ++L + S DE A +F+ +A R F G++ +
Sbjct: 63 LSYKNKFNDLVLSSAKRRINQISHSLKLKGSFQDE----AFKFFILATQRGFINGQKLQN 118
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ S LY CRQK LLIDFS+ I ++G+V+L+ +I D + +DPS+
Sbjct: 119 LCVSSLYTVCRQKKTHHLLIDFSDITQIQTNKIGSVFLK-----FIRDLKINIPVIDPSL 173
Query: 178 FLHKFTDRLLPGGNKKVCD-TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
++ +F RL G K+ +A ++A MKR+W++TGR+PSGLCGAA+ ++ HGLK +
Sbjct: 174 YIQRFVSRLQLGNKTKLVSMSALRLIARMKREWVSTGRRPSGLCGAAILLATKMHGLKKT 233
Query: 237 KSDI-----IEDFM--ARKKELHEGVAANL 259
+ +I I DF +R +E+++ +NL
Sbjct: 234 QKEISSIVRIGDFAIRSRLREINKTSMSNL 263
>gi|6634765|gb|AAF19745.1|AC009917_4 Contains a Transcription factor TFIIB repeat PF|00382 [Arabidopsis
thaliana]
Length = 294
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 163/362 (45%), Gaps = 105/362 (29%)
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 219 LCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 278
+CGAALY +AL+HG+K SK+DI N+ +C+
Sbjct: 61 ICGAALYTAALSHGIKCSKTDI----------------TNIV-----------YICEATL 93
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEENSSFERESDSP 337
T + G E + + G+DPP+FQ AE+ERM KAS EEN + +S
Sbjct: 94 TKRLIEFGNT-----EAASFTADELSGSDPPSFQRAEKERMEEKASTEENDKQQNSDESS 148
Query: 338 FMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDF 397
+S +D D
Sbjct: 149 TLSDLD----------------------------------------------------DG 156
Query: 398 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 457
E+D Y N +E H +II++ N Y E++AA A A EAS
Sbjct: 157 ELDCYFRNPKEVHLVEIIFDHENPGYDEKEAAALNACNNASNLFEAS------------- 203
Query: 458 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
AA AKSRK+K+Q+RA E KN+ P TA+EA M+ +K+ N D LE+L D
Sbjct: 204 -----KAAAAKSRKDKRQQRAEEEKNAPPPATAMEAVDSMVKRKKFPD-TNCDYLEELLD 257
Query: 518 DS 519
S
Sbjct: 258 TS 259
>gi|403284473|ref|XP_003933594.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Saimiri
boliviensis boliviensis]
Length = 623
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 139/284 (48%), Gaps = 41/284 (14%)
Query: 41 FVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRF 100
F + A L G F + E SR + ++ + + N L + + + A F
Sbjct: 5 FFEGAGKTPTLGGGFHVNLGKE---SRAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNF 59
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
+ +AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 60 FKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARE 119
Query: 161 LYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGL 219
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGL
Sbjct: 120 LCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGL 174
Query: 220 CGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHK 277
CGAAL V+A H DF KE+ V KV S + + L + +
Sbjct: 175 CGAALLVAARMH-----------DFRRTVKEVISVV---------KVCESTLRKRLTEFE 214
Query: 278 DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
DT + +EFM I LE DPP++ +R+ +K
Sbjct: 215 DTPT------SQLTIDEFMKID--LEEECDPPSYTAGQRKLRMK 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 383 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 442
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 443 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 475
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 476 EQKKISSKINYSVLRGL 492
>gi|8099212|gb|AAF72065.1|AF262374_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 157/336 (46%), Gaps = 58/336 (17%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A+ R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + +DP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSLDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D+I
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ARKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LE 287
Query: 304 GGADPPAFQVA---ERERMVKASAEENSSFERESDS 336
DPP+F+ A +RER+ E + ++E D+
Sbjct: 288 REQDPPSFKAARKKDRERIKDMGEHELTELQKEIDA 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 509
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 510 DVLEKLFD 517
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|17531397|ref|NP_495526.1| Protein BRF-1 [Caenorhabditis elegans]
gi|351065110|emb|CCD66264.1| Protein BRF-1 [Caenorhabditis elegans]
Length = 759
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 155/350 (44%), Gaps = 60/350 (17%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFVRTIQSE 62
CS+C C CG VLE+ TE F + A G L G FV
Sbjct: 5 CSNCGSSEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFV------ 58
Query: 63 YGASRERLMEKAFDDM-----RQMKNALNIGESDEI----------VHVAKRFYGIAVAR 107
S ER F+ M R+M A DE+ ++ A FY + V+R
Sbjct: 59 ---SSERAAANNFNGMGSQESREMTYAKGRKVIDELGSQLRINSHCMNTAFNFYKMCVSR 115
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N T+GR V A C+Y+ CR ++ LL+DFS+ INV++LG L + L I
Sbjct: 116 NLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRIN--- 172
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DP +++ +F L G +K V + A ++ MKRDW++TGR+P+G+CGAAL +
Sbjct: 173 --LPSTDPCLYIMRFACVLDFGDKQKEVVNLATRLVQRMKRDWMSTGRRPTGICGAALLI 230
Query: 227 SALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG 286
+A + S +DI+ R + EG V+ K D G
Sbjct: 231 AARSLNFNRSINDIV-----RVVHISEG-----------------VIRKRLDEFSQTPSG 268
Query: 287 LCRSCYEEFMTISEGLEGGADPPAFQVAE---RERMVKASAEENSSFERE 333
+EF T+ LE DPPA++ + RE ++ AE+ S + +
Sbjct: 269 SL--TIDEFSTVD--LEHSEDPPAYRESRRKAREDQLRKEAEQAESMKEQ 314
>gi|300121033|emb|CBK21415.2| unnamed protein product [Blastocystis hominis]
Length = 592
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 28/258 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQS-----QLSGNFVRT 58
C +C + V D Q+ C CG V++++ F N S L+ V
Sbjct: 3 CPACKQEVFDLGGGDGQVICTNCGCVIDENQIVNNVEFNGNGESASFYSFFGLTRRIVGQ 62
Query: 59 IQSEYGA--------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
+ +E G+ SRE + + Q+ LN+ ++ A + +A
Sbjct: 63 VVNETGSSSYASSSGRYSYKESREVTLLNGRKKISQIAAGLNL---QNLISNACNVFNLA 119
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
VA+NFT+GR+ V A+CLY+ACR P +LIDF++ L +V+ LG+VY+++ +L +
Sbjct: 120 VAKNFTQGRKATHVCAACLYVACRMNKIPTMLIDFADLLQTDVWSLGSVYMKMNNMLGLK 179
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+K +DPS+++++F ++ G VC TA I M+RDWI GR+P G+ AA
Sbjct: 180 -----MKPIDPSLYINRFASQMEFGDQLSAVCLTALRITKRMQRDWIVLGRRPLGIVAAA 234
Query: 224 LYVSALTHGLKFSKSDII 241
L ++A HG + +K DI+
Sbjct: 235 LLLAARIHGFRRTKKDIL 252
>gi|195056023|ref|XP_001994912.1| GH17498 [Drosophila grimshawi]
gi|193892675|gb|EDV91541.1| GH17498 [Drosophila grimshawi]
Length = 667
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 161/341 (47%), Gaps = 52/341 (15%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEMGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L + A F+ +A+ R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKRDITLLCQQLQ--LTQHYADTALNFFKMALHRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + +D+I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHEFSRTLADVIGVV-- 254
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
++HE S + + L + +T + GL EEFMT+ LE
Sbjct: 255 ---KIHE-------------STLRKRLSEFAETP---SGGL---TLEEFMTVD--LEREQ 290
Query: 307 DPPAFQVA---ERERMVKASAEENSSFERESDSPFMSRVDK 344
DPP+F+ A +RE + E + ++E D+ + K
Sbjct: 291 DPPSFKAARIKDRELIQNMGVHELTELQKEIDAHLEKDIGK 331
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 29/125 (23%)
Query: 391 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 450
D++D E+D Y+ E+E K +W+ +N E+L EQ +E
Sbjct: 435 IDDLNDEELDQYVLTEQEADTKLDMWKNLNAEFLREQQERE------------------- 475
Query: 451 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 510
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 476 -----ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYD 525
Query: 511 VLEKL 515
+L+ L
Sbjct: 526 ILKTL 530
>gi|195443968|ref|XP_002069658.1| GK11456 [Drosophila willistoni]
gi|194165743|gb|EDW80644.1| GK11456 [Drosophila willistoni]
Length = 691
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/355 (28%), Positives = 158/355 (44%), Gaps = 56/355 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C + C CG VLED +E F + G + G FV S
Sbjct: 7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEAGHGAVAI-GQFVSAESSGG 65
Query: 62 --EYG----------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
YG SRE ++KA D+ + L S A F+ +A+ R+
Sbjct: 66 ATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALGRHL 123
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL+L L I
Sbjct: 124 TRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN----- 178
Query: 170 LKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
+ VDP +++ +F +RL G +V TA I+ MK+D + +GR+P+GLCGAAL ++A
Sbjct: 179 IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAA 238
Query: 229 LTHGLKFSKSDIIEDFMARKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACG 286
H + D+I + L + ++ A P+ G +
Sbjct: 239 RMHDFSRTLVDVIGVVKIHESTLRKRLSEFAETPSGGLTL-------------------- 278
Query: 287 LCRSCYEEFMTISEGLEGGADPPAFQVA---ERERMVKASAEENSSFERESDSPF 338
EEFMT+ LE DPP+F+ A +RER+ E + +++ D+
Sbjct: 279 ------EEFMTVD--LEREQDPPSFKAARKKDRERIKDMGEHELTDLQKQIDAQL 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 28/125 (22%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D++D E+D Y+ EEE K +W+ +N EYL+EQ +E
Sbjct: 444 DLNDDELDQYVLTEEEAVTKLNMWQTLNAEYLKEQKERE--------------------- 482
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 512
+ LA + +K K ++ GP+ TA EA +ML +K++SSKINY++L
Sbjct: 483 ---ERLAKEREEGKPEKKKRKPPRKKI----IGPSSTAGEAIEKMLQEKKISSKINYEIL 535
Query: 513 EKLFD 517
+ L D
Sbjct: 536 KTLID 540
>gi|195391494|ref|XP_002054395.1| GJ22828 [Drosophila virilis]
gi|194152481|gb|EDW67915.1| GJ22828 [Drosophila virilis]
Length = 666
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 157/343 (45%), Gaps = 56/343 (16%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEMGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L + A F+ +A+ R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKRDITLLCQQLQ--LTQHYADTALNFFKMALHRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + +D+I
Sbjct: 197 LGPKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHEFSRTLADVIGVVKI 256
Query: 247 RKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 304
+ L + ++ A P+ G + EEFMT+ LE
Sbjct: 257 HESTLRKRLSEFAETPSGGLTL--------------------------EEFMTVD--LER 288
Query: 305 GADPPAFQVA---ERERMVKASAEENSSFERESDSPFMSRVDK 344
DPP+F+ A +RE + E + ++E D+ + K
Sbjct: 289 EQDPPSFKAARIKDRELIQNMGVHELTELQKEIDAHLEKDIGK 331
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 29/123 (23%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
D++D E+D Y+ E+E K +W+ +N E+L EQ +E
Sbjct: 438 DLNDEELDQYVLTEQEADTKLSMWKNLNAEFLREQKERE--------------------- 476
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 512
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD+L
Sbjct: 477 ---ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYDIL 528
Query: 513 EKL 515
+ L
Sbjct: 529 KTL 531
>gi|339241573|ref|XP_003376712.1| transcription factor IIIBsubunit [Trichinella spiralis]
gi|316974558|gb|EFV58043.1| transcription factor IIIBsubunit [Trichinella spiralis]
Length = 605
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 14/229 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLM------EKAF 75
C CG V+ ++ +E F + A G+S L G F+ S + + M E +
Sbjct: 22 VCGNCGHVISENTIVSEVEFYETAGGRSVLLGQFIHKDGSSISLTGMKNMNSLSSTELTY 81
Query: 76 DDMRQ-MKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
+R+ M+N A + S + RFY IA R+ T+GR++ V S LY++CR + P
Sbjct: 82 IKVRKHMENVASQLQLSQAVTEAGFRFYKIAHGRSLTRGRKSSHVIPSLLYISCRLNAVP 141
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK- 192
+LIDFS+ +NV+ LG + L + +++ L DP I++ +F +L G +
Sbjct: 142 QMLIDFSDVAEVNVFTLGRTFSFLAREMHLK-----LPPTDPCIYVLRFAQKLRFGDKEN 196
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+V A ++ MK DW+T GR+P+GLCGAAL ++A +G + +++
Sbjct: 197 QVIHLALRLIQRMKNDWMTYGRRPAGLCGAALIIAARYYGFNRTIENVV 245
>gi|194225425|ref|XP_001494856.2| PREDICTED: transcription factor IIIB 90 kDa subunit, partial [Equus
caballus]
Length = 620
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 142/285 (49%), Gaps = 42/285 (14%)
Query: 41 FVKNAAGQS-QLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
FV AG++ L G F + E SR + ++ + + N L + + + A
Sbjct: 1 FVFLGAGKTPTLGGGFHVNLGKE---SRAQTLQNGRRQIHHLGNQLQLNQ--HCLDTAFN 55
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 56 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 115
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 218
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 116 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 170
Query: 219 LCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKH 276
LCGAAL V+A H DF KE+ V KV S + + L +
Sbjct: 171 LCGAALLVAARMH-----------DFRRTVKEVISVV---------KVCESTLRKRLTEF 210
Query: 277 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+DT + +EFM I LE DPP++ +R+ +K
Sbjct: 211 EDTPT------SQLTVDEFMKID--LEEECDPPSYTAGQRKLRMK 247
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 381 DPKDASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK 440
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 441 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 473
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 474 EQKKISSKINYSVLRDL 490
>gi|299117182|emb|CBN75146.1| similar to TFIIB related factor hBRF [Ectocarpus siliculosus]
Length = 990
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 124/251 (49%), Gaps = 18/251 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C SC +P C CG V++++N + F + G S + G FV +
Sbjct: 23 CPSCGGTNFIDQPGSGDRACAECGTVVQENNIVSTVQF-SESGGSSNVVGQFVSGDRGRP 81
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHV-------------AKRFYGIAVARNFT 110
F R ++A +I+ V A R + + V +N+
Sbjct: 82 SGGGAARGRGRFGQSRDSRDATIQNGKKKIIQVLAQLHLRTTLADEAARLFALCVTQNYV 141
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR+T + A+C+Y+ CRQ P +LID S+ L +NVY LG + +L + L + + +
Sbjct: 142 QGRKTMNIVAACVYIVCRQNHFPIMLIDISDKLAVNVYVLGKTFQKLIKHLNLQTQVPI- 200
Query: 171 KQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDP++++ +F +L L VC TA I+ SMKRD++ +GR+P+G+C AAL ++
Sbjct: 201 --VDPAMYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATR 258
Query: 230 THGLKFSKSDI 240
+ ++ SK +I
Sbjct: 259 VNRIERSKEEI 269
>gi|356561939|ref|XP_003549234.1| PREDICTED: uncharacterized protein LOC100781816 [Glycine max]
Length = 277
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 106/137 (77%), Gaps = 4/137 (2%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D S+ SDIDD EVD Y+H+EE KH KKI+WE NRE+LEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREHLEEQAAKEAAAAASKKAFEAKF 169
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR--- 502
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQ 229
Query: 503 -LSSKINYDVLEKLFDD 518
L SK+N+++L +LFD+
Sbjct: 230 GLKSKVNFELLNELFDE 246
>gi|429962700|gb|ELA42244.1| hypothetical protein VICG_00643 [Vittaforma corneae ATCC 50505]
Length = 394
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 128/523 (24%), Positives = 220/523 (42%), Gaps = 133/523 (25%)
Query: 1 MVWCSSCAR---HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR 57
M CS+C H R + C CG V E++ + F + ++ L G V
Sbjct: 1 MAKCSNCGSLDFHTDAAR---GSVYCGECGMVHEENTVVSALQF-DSTTSKTVLYGKIVN 56
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNA-LNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+ G + ++ ++ +K+ L + ++ A R+Y + + + +KG+
Sbjct: 57 VENTNIGT---QFIDSSYYIKNTLKSICLKLSLGNDHAECAFRWYKLCLQYSLSKGKSIL 113
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
++C+Y+ CRQ+S P LLIDFSN L I+++++G V+L++ Q+L I + +DPS
Sbjct: 114 YTLSACVYITCRQESTPHLLIDFSNELRIDLFKIGKVFLKIRQLLGID-----IPLIDPS 168
Query: 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
+++H+F + L NK++ + + +++ MK+DWI GR+P+ CGAAL +++
Sbjct: 169 LYMHRFCSQ-LKFKNKEILNFSTLLVSRMKKDWILEGRRPNNSCGAALLIASRIFN---E 224
Query: 237 KSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFM 296
+ DI E +AR +H +A +N+ L + +DT ++FM
Sbjct: 225 ERDIAE--VARA--VHASIAT-----------INKRLEEMRDTESA------ELQIDQFM 263
Query: 297 TISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVP 356
+ + +PP F+ A + + + EE
Sbjct: 264 DV--WISKEENPPVFKKALQAEVSEERIEET----------------------------- 292
Query: 357 KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIW 416
H TP T D S D + F+ D +L NE+E K +IW
Sbjct: 293 ---------------HFDTP----ITTFEDDSVEMKDAETFDFDDFLLNEDEAKTKAVIW 333
Query: 417 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 476
++M EYL+E AQE RK +++
Sbjct: 334 DQMYGEYLKE----------------------------AQE-----------KRKLRKES 354
Query: 477 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
+K G T EA + K++SSK+NY LE LFD S
Sbjct: 355 VRRHSKRHG-FNTVEEAFLSL--DKKVSSKLNYAALEALFDPS 394
>gi|324501334|gb|ADY40597.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1113
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 143/309 (46%), Gaps = 49/309 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEYGASRERLMEKAF 75
C +CG VLE+ + T+ + + S L G F+ T G + E +
Sbjct: 24 CVKCGMVLEESAIVLDVTYQERSGAGSTLVGQFISHDHEQRHTFSGVPGLPHQEPREVTY 83
Query: 76 DDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
M+ K + I I + A F+ + V RNFT+GR V A+CLY+ CR ++
Sbjct: 84 --MKGKKLIVEIASQLRINQHCIDTAHNFFRMCVCRNFTRGRMRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-G 190
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDVTQVNVFDLGRTLNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEK 196
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
K+V A ++ MKRDWI TGR+P+GLCGAAL ++A + + DI+
Sbjct: 197 EKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALVLAARCYNFNRTIGDIV--------- 247
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHK--DTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
+V ++E + + + + GK + L +EF T+ LE DP
Sbjct: 248 --------------RVVHISETVVRKRLDEFGKTPSSEL---TIDEFTTVD--LEHCEDP 288
Query: 309 PAFQVAERE 317
PAF+ + R+
Sbjct: 289 PAFRESRRK 297
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 378 VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 437
VD E S+G + IDD E+D Y+ + EE K +W ++N+E+L E +E A
Sbjct: 412 VDDFEENSNGELDLEGIDDDEIDTYILSREEAEMKSRLWMKLNKEHLAEMERRERERAEE 471
Query: 438 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 497
+ + + A T EA ++
Sbjct: 472 EEREKEGAAKKKRKKSSGAAKKKEPIVA----------------------STVQEAMVKV 509
Query: 498 LTKKRLSSKINYDVLEKLFD 517
+ +KRLS+KINY++L+++ D
Sbjct: 510 IQEKRLSNKINYEILKEIED 529
>gi|291000995|ref|XP_002683064.1| transcription factor [Naegleria gruberi]
gi|284096693|gb|EFC50320.1| transcription factor [Naegleria gruberi]
Length = 654
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 129/279 (46%), Gaps = 45/279 (16%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH---------NFSTEATFVKN-------- 44
+WCS+C HV + + L C CG+ L H N + FV +
Sbjct: 4 IWCSTCKAHVNPEQTTEG-LYCGECGEELGSHFEETVEFNENHTMVGRFVSSERAMASAA 62
Query: 45 --AAGQSQLS----GNFVRTIQSEYGASRERLM-EKAFDDMRQMKN-----ALNIGESDE 92
AG Q S GN + T + E+ M E + + K AL + +
Sbjct: 63 TALAGVPQFSYDENGNLIFTSAVPQAGNTEKPMTESRLQTIEKAKRRISVIALLMKIPNH 122
Query: 93 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152
V A Y +A+ + TK R + V A+CLY RQ +P++L+DFS + +V+ +G
Sbjct: 123 YVDRATNTYKLALLKGSTKARNPDIVAAACLYFVLRQDKQPYMLMDFSESMKTDVFLIGH 182
Query: 153 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK---------KVCDTARDILA 203
+L L L L V+P ++ +F +RLL K +V T ++A
Sbjct: 183 CFLDLMTALNFK-----LPAVEPFFYVRRFANRLLLNSGKENANQEAINRVIQTTLKLIA 237
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLK-FSKSDII 241
SMKR+WI TGR+P+G+C AAL V+A HG K SK D++
Sbjct: 238 SMKRNWIQTGRRPAGICAAALLVAARIHGFKNISKQDVV 276
>gi|345804203|ref|XP_548005.3| PREDICTED: transcription factor IIIB 90 kDa subunit [Canis lupus
familiaris]
Length = 812
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 38/247 (15%)
Query: 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 137
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 228 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 285
Query: 138 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 196
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 286 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 340
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 341 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV- 388
Query: 257 ANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA 314
KV S + + L + +DT + +EFM I LEG DPP++
Sbjct: 389 --------KVCESTLRKRLTEFEDTPT------SQLTVDEFMRID--LEGECDPPSYTAG 432
Query: 315 ERERMVK 321
+R+ +K
Sbjct: 433 QRKLRLK 439
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D T DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 573 DPTDPCGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK 632
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 633 ------------------ELGI---------YKEHKPKKSCKRREPIQASTAGEAIEKML 665
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 666 EQKKISSKINYSVLRDL 682
>gi|444705816|gb|ELW47205.1| Transcription factor IIIB 90 kDa subunit [Tupaia chinensis]
Length = 620
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/451 (27%), Positives = 200/451 (44%), Gaps = 71/451 (15%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 64 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 123
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 124 ELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSG 178
Query: 219 LCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 278
LCGAAL V+A H + + +++ + L + L + +D
Sbjct: 179 LCGAALLVAARMHDFRRTVKEVVSVVKVCESTL------------------RKRLTEFED 220
Query: 279 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAE-----------EN 327
T + EEFM I LE DPP++ ++++ +K + E
Sbjct: 221 TPT------SQLTIEEFMRID--LEEECDPPSYTAGQKKQRMKQLEQVLSKQLEEVEGEI 272
Query: 328 SSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDG 387
SS++ E + + + + P P G+ K+ +T+ A++ GD +
Sbjct: 273 SSYQDEIEIELENSRPRAKGPLP---GL-KDGSTEDATSSAFGDEDPEDEELEAAASHLN 328
Query: 388 SDNF-------SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 440
D + S + D E G + + RE + Q ++ +
Sbjct: 329 KDFYQELLRGGSAMGDSEATGVPDETCRPPALDLGISDSIRECIASQ-GRDPKDTSGDGE 387
Query: 441 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE----------AKNSGP---- 486
L+ S + E + + + A + + R EK+ + A E K SG
Sbjct: 388 LDLSGIDDLEIDRVSHRVGAPGPRSQPQLRAEKEARIAKEKELGVYKEHKPKKSGKRREP 447
Query: 487 --AQTALEATRRMLTKKRLSSKINYDVLEKL 515
A TA EA +ML +KR+SSKI+Y VL L
Sbjct: 448 ILASTAGEAIEKMLEQKRISSKIDYSVLRGL 478
>gi|426248972|ref|XP_004018226.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Ovis aries]
Length = 798
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 98/165 (59%), Gaps = 8/165 (4%)
Query: 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 137
+ + N L + + + A F+ +AV+++ T+GRRT V A+CLYL CR + P +L+
Sbjct: 236 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRTAHVVAACLYLVCRTEGTPHMLL 293
Query: 138 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 196
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 294 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 348
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 349 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 393
>gi|452839595|gb|EME41534.1| hypothetical protein DOTSEDRAFT_73820 [Dothistroma septosporum
NZE10]
Length = 876
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 127/248 (51%), Gaps = 32/248 (12%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY-----GA 65
D + C C + + + N E TF +NA G++ + G V RT+ S G
Sbjct: 53 DGLIVCKACYQQVREANIVAEVTFEENAGGRATVQGGTVNDNSRHARTLNSATFRKIGGG 112
Query: 66 SRERLMEKAFDDMRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
R L D + K AL +G + A+ + +A NF+ GRRT++V A
Sbjct: 113 ERNSLA----DAQQTGKKALGEVCRKLGVETNVQTQAESIWVMASNINFSAGRRTDEVVA 168
Query: 121 SCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES---NVLKQVDPS 176
+CLY ACR QK LL+D + YL INV+ LG VY L + LY+ +ES L +++P
Sbjct: 169 ACLYAACRRQKENQLLLMDIAEYLKINVFRLGEVYKDLGKELYLNNESVGNQNLIELEPL 228
Query: 177 IFLHKFTDRLLPGGNKKVCDTARD---ILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
IF K+ +L G K D ++D I+ M RDWI +GR P+GLCGA + ++A +
Sbjct: 229 IF--KYCQKLQFG--DKTNDVSQDALRIIRRMNRDWIVSGRHPAGLCGACIILAARMNNF 284
Query: 234 KFSKSDII 241
+ S +++
Sbjct: 285 QRSVREVV 292
>gi|354473188|ref|XP_003498818.1| PREDICTED: hypothetical protein LOC100753600 [Cricetulus griseus]
Length = 1450
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 37/272 (13%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
L G F + E SR + ++ + + + L + + + A F+ +AV+++ T
Sbjct: 843 LGGGFHVNLGKE---SRAQTLQNGRRHIHHLGSQLQL--NQHCLDTAFNFFKMAVSKHLT 897
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I
Sbjct: 898 RGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCIN-----A 952
Query: 171 KQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 953 PAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 1012
Query: 230 THGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 289
H + + ++I + S + + L + +DT P + +
Sbjct: 1013 MHDFRRTVKEVISVVKVCE------------------STLRKRLTEFEDT--PTS----Q 1048
Query: 290 SCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+EFM I LE DPP++ +R+ +K
Sbjct: 1049 LTIDEFMKID--LEEECDPPSYTAGQRKLRMK 1078
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 375 TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
+P D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA
Sbjct: 1206 SPSGDPKDTSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEARI 1265
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
A K EL KE + K++ + + A TA EA
Sbjct: 1266 AKEK------------------ELGI---------YKEHKPKKSCKRREPILASTAGEAI 1298
Query: 495 RRMLTKKRLSSKINYDVLEKL 515
+ML +K++SSKINY VL L
Sbjct: 1299 EKMLEQKKISSKINYSVLRDL 1319
>gi|300708839|ref|XP_002996591.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
gi|239605905|gb|EEQ82920.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
Length = 282
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 140/271 (51%), Gaps = 26/271 (9%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS+C + C CG V E++ + +F N +S L+G + +
Sbjct: 3 CSNCNSSDMATDSAQGVIYCTNCGMVHEENIIVSTISFSDNGL-KSTLNGKVINIDSKQV 61
Query: 64 GASRERLMEKAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
G + D +KN + N+G + + R+Y + + N +KG+
Sbjct: 62 GT-------QYIDASFYIKNTISSICSNMGLGSNFLDCSYRYYRLLLPYNLSKGKSILYT 114
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
++C+Y+ CR++ P LLIDFSN LNI+V+++G + ++ +VL + + VDP+++
Sbjct: 115 LSACVYIVCREEKTPHLLIDFSNALNIDVFKIGKSFTKIVEVLNLN-----IPNVDPTLY 169
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ ++ + L N+K+ A I++ M RDWITTGR+P+ +CGAA+ +++ + + S S
Sbjct: 170 IQRYIVK-LNLKNQKIPTLALRIMSRMSRDWITTGRRPNNICGAAILIASRVYNEERSLS 228
Query: 239 DI-----IEDFMARKK--ELHEGVAANLPNN 262
++ + +F+ +K+ E+ + A+L N
Sbjct: 229 EVAKVVHVSEFILKKRLLEIQDTQTADLSVN 259
>gi|407927197|gb|EKG20097.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 714
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 20/236 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ---SEYGASRERLMEKA 74
D + C CG V+ + + +E TF + ++G + + G +V Q + G+S RL
Sbjct: 50 DGVMVCTSCGNVINESHIVSEVTFGETSSGAATVQGGYVGDEQRHANTMGSSARRLGLGG 109
Query: 75 F-----------DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
D +R + +AL + D + A Y +A FT GRR + A CL
Sbjct: 110 GDGRSTAESNGQDAVRGLMSALRM-TGDNLESRAMNIYRLAARERFTHGRRPIVIAACCL 168
Query: 124 YLACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES--NVLKQVDPSIFLH 180
Y CR ++ +LLIDF+ + +NV++LG Y +L L+I+D S +V ++P +
Sbjct: 169 YYICRTRQGNKYLLIDFAEKIKLNVFKLGETYKELLGKLFISDPSKRDVYTALEPEPLIK 228
Query: 181 KFTDRLLPG--GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
K+ D+L G G ++V + A IL MKRDW+ GR+P+G+CGA + ++A + +
Sbjct: 229 KYVDKLEFGEAGGRRVAEDAVKILKRMKRDWMVDGRQPAGVCGACIILAARMNNFR 284
>gi|449668786|ref|XP_002161156.2| PREDICTED: transcription factor IIIB 70 kDa subunit-like [Hydra
magnipapillata]
Length = 943
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 16/251 (6%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT--- 58
+ C +C + P C CG V+E + F +N+AG S + G FV +
Sbjct: 276 ISCKNCGGIEIDNDPARGDSVCVSCGSVVESLCIVNDIEFHENSAGSSSVIGQFVSSEGQ 335
Query: 59 ----IQSEYGASRERLMEKAFDDMRQMKNAL--NIGESDEIVHVAKRFYGIAVARNFTKG 112
S++G ++ + A ++ +Q+ N I S + A F+ +A ++ FT G
Sbjct: 336 NRVGSYSKFGVGQDH-RQVALENGKQLINNYGGQIKMSHHCLDSAYMFFKMAASKRFTVG 394
Query: 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ 172
R+T V +CLYL R + P +L+D + + ++ LG V+L L + L I
Sbjct: 395 RKTIYVVGACLYLVSRTEKTPHMLLDICDAIQCDIVVLGRVFLALARTLCID-----CPI 449
Query: 173 VDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
VDPS+++H+F +L G + +V A ILA MK+DWI GR+PS LCGAAL ++
Sbjct: 450 VDPSLYIHRFAHQLDFGDKENEVSMAALRILARMKKDWIHLGRRPSALCGAALIIAGKLF 509
Query: 232 GLKFSKSDIIE 242
+ DI++
Sbjct: 510 NFNVTMDDIVK 520
>gi|431839340|gb|ELK01267.1| Transcription factor IIIB 90 kDa subunit [Pteropus alecto]
Length = 823
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 11/192 (5%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
L G F + E SR + ++ + + + L + + + A F+ +AV++ T
Sbjct: 214 LGGGFHVNLGKE---SRAQTLQNGRRQIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKRLT 268
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 269 RGRKMAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA--- 325
Query: 171 KQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 326 --IDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 383
Query: 230 THGLKFSKSDII 241
H + + ++I
Sbjct: 384 MHDFRRTVKEVI 395
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 583 DPKDASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK 642
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 643 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 675
Query: 499 TKKRLSSKINYDVLEKL 515
+KRLSSKI+Y VL L
Sbjct: 676 EQKRLSSKIDYSVLRGL 692
>gi|453083368|gb|EMF11414.1| hypothetical protein SEPMUDRAFT_150357 [Mycosphaerella populorum
SO2202]
Length = 889
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 18/241 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQS----EYGAS 66
D ++ C C + ++N E TF +NA G++ + G V +T+ S + G
Sbjct: 50 DGKVVCLDCYTEIAENNIVAEITFEENAGGRATVQGGTVNDNSRHAKTLGSGAYRKVGGG 109
Query: 67 RERLMEKAFDDMRQMKNAL--NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+ + R+ L +G ++ A++ + +A NF+ GRRT++V A+CLY
Sbjct: 110 ERNSLADVQNAGRKALEQLCPKLGILPQVQVQAEQIWVLAANINFSAGRRTDEVVAACLY 169
Query: 125 LACRQ-KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ--VDPSIFLHK 181
ACR+ K LL+D + L INV+ LG VY +C+ LY+ADE NV Q V+ ++K
Sbjct: 170 AACRRRKDNKVLLMDIAELLQINVFRLGEVYKDMCRELYLADE-NVGTQHMVELEPLIYK 228
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ D+L K V A I+ M RDWI +GR P+GLCGA + ++A + + + ++
Sbjct: 229 YCDKLQFAEKTKDVAADALKIIRRMNRDWIVSGRHPAGLCGACIILAARMNNFQRTVREV 288
Query: 241 I 241
+
Sbjct: 289 V 289
>gi|268562683|ref|XP_002646739.1| C. briggsae CBR-BRF-1 protein [Caenorhabditis briggsae]
Length = 751
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 152/348 (43%), Gaps = 62/348 (17%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFVRTIQSE 62
CS+C C CG VLE+ TE F + A G L G FV
Sbjct: 5 CSNCGSTEIDEDAARGDATCTTCGTVLEESIVVTENQFQERAGGSGHTLVGQFV------ 58
Query: 63 YGASRERLMEKAFDDM-----RQMKNALNIGESDEI----------VHVAKRFYGIAVAR 107
S ER F+ M R+M A DE+ ++ A F+ + V+R
Sbjct: 59 ---SAERAAANNFNGMGSQESREMTYAKGKKVIDELGSQLRINAHCMNTAFNFFKMCVSR 115
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N T+GR V A CLY+ CR ++ LL+DFS+ INV++LG + + L I
Sbjct: 116 NLTRGRNRASVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFISRSLRIN--- 172
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DP +++ +F L G +K V A ++ MKRDW++TGR+P+G+CGAAL +
Sbjct: 173 --LPATDPCLYIIRFACVLDFGDKQKEVVTLATRLVQRMKRDWMSTGRRPTGICGAALLI 230
Query: 227 SALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNE-VLCKHKDTGKPFAC 285
+A + + +DI+ +V ++E V+ K D
Sbjct: 231 AARSMNFNRTINDIV-----------------------RVVHISESVIRKRLDEFSQTPS 267
Query: 286 GLCRSCYEEFMTISEGLEGGADPPAFQVAE---RERMVKASAEENSSF 330
G +EF + LE DPPA++ A RE +K AE+ S
Sbjct: 268 GSL--TIDEFSNVD--LEHSEDPPAYREARRKAREEQLKKEAEQAESM 311
>gi|123472770|ref|XP_001319577.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
gi|121902363|gb|EAY07354.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
Length = 409
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 24/231 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV---------RTIQSEYGASRERLMEK 73
C CG +L++ E +F+ NA G + +SG FV + ++ ++
Sbjct: 24 CSACGLILQEQALVNELSFIDNAHGAATVSGQFVPSSGMSGMGGGVSTQTVTEGLNKIDA 83
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSK 132
D++ ++ S + V +A R Y IAV FT+GR E V A+ +Y+A R +S
Sbjct: 84 ICDNLPKL--------SQDAVELAHRIYQIAVKHRFTRGRTIEIVSAAAVYVAIRVNRSS 135
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN- 191
+LL D + +++ +YEL A L+L + + L +DP +++ +F + L G N
Sbjct: 136 GYLLDDVAEHVSCGIYELAATALRLAHAV-----NQPLPTIDPVLYITRFLEELNLGRNL 190
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
K V DTA I+ + RDWI TGRKPSG+ G A+ ++ H + SK I E
Sbjct: 191 KAVHDTAIHIVHRLDRDWIQTGRKPSGIVGTAIMIACQIHHIPISKERIKE 241
>gi|449502947|ref|XP_002200378.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Taeniopygia
guttata]
Length = 565
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 137/263 (52%), Gaps = 36/263 (13%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKRTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHMLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 281
AAL V+A H + + ++I R ++ E S + + L + +DT
Sbjct: 116 AALLVAARMHDFRRTVKEVI-----RVVKVCE-------------STLRKRLTEFQDTPT 157
Query: 282 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAER----ERMVKASAEENSSFERESDSP 337
+ +EFM I LE DPP+F ++ +++ KA +++ FE E S
Sbjct: 158 ------SQLTIDEFMKID--LEEECDPPSFTAGQKKLKIQQLEKALSKKLEDFEGEISSY 209
Query: 338 FMSRVDKVQSPEPESIGVPKNCT 360
++++ P++ GV N T
Sbjct: 210 QDEIESELENSRPKAKGVFANFT 232
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 333 DGELDLSGIDDSEIDRYILNEAEAQIKTELWMKENADYLKEQKEKEARIAKEK------- 385
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 505
EL KE + K++A+ + A TA EA +ML +K++SS
Sbjct: 386 -----------ELGIY---------KEHKPKKSAKKREPIQASTAGEAIEKMLEQKKISS 425
Query: 506 KINYDVLEKL 515
KINY+VL L
Sbjct: 426 KINYNVLRDL 435
>gi|308503040|ref|XP_003113704.1| CRE-BRF-1 protein [Caenorhabditis remanei]
gi|308263663|gb|EFP07616.1| CRE-BRF-1 protein [Caenorhabditis remanei]
Length = 783
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 121/255 (47%), Gaps = 31/255 (12%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFVRTIQSE 62
CS+C C CG VLE+ TE F + A G L G FV
Sbjct: 5 CSNCGSAEIDEDAARGDATCTVCGTVLEESIVVTENQFQERAGGSGHTLVGQFV------ 58
Query: 63 YGASRERLMEKAFDDM-----RQMKNALNIGESDEI----------VHVAKRFYGIAVAR 107
S ER F+ M R+M A DE+ ++ A F+ + V+R
Sbjct: 59 ---SAERAAANNFNGMGSQESREMTYAKGRKVIDELGSQLRINAHCMNTAFNFFKMCVSR 115
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N T+GR V A CLY+ CR ++ LL+DFS+ INV++LG + + L I
Sbjct: 116 NLTRGRNRSSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFIARSLRIN--- 172
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DP +++ +F L G +K + A ++ MKRDW++TGR+P+G+CGAAL +
Sbjct: 173 --LPATDPCLYIIRFACVLDFGDKQKDIVTLATRLVQRMKRDWMSTGRRPTGICGAALLI 230
Query: 227 SALTHGLKFSKSDII 241
+A + S +DI+
Sbjct: 231 AARSMNFNRSINDIV 245
>gi|398408149|ref|XP_003855540.1| hypothetical protein MYCGRDRAFT_37171 [Zymoseptoria tritici IPO323]
gi|339475424|gb|EGP90516.1| hypothetical protein MYCGRDRAFT_37171 [Zymoseptoria tritici IPO323]
Length = 730
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 20/242 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTI-----QSEYGA 65
D C C + + N E TF + G++ + G V RT+ + G
Sbjct: 45 DGLTICKHCYTQINESNIVAEVTFEEQTGGRATVQGGTVNDNSRHARTLGAGAYRKVGGG 104
Query: 66 SRERLMEKAFDDMRQMKNAL-NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
R L + R ++ +G +D + A + + +A NF+ GR+T++V A+CLY
Sbjct: 105 ERNTLADIQNAGRRALEQLCPKLGITDNVSVQANQIWTLAANINFSAGRKTDEVVAACLY 164
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES---NVLKQVDPSIFLH 180
ACR Q + LL+D + ++INV+ LG VY +C+ LYI +E+ L +++P +H
Sbjct: 165 AACRRQTNNQILLMDIAELVHINVFRLGEVYKDMCKELYINNENIGHQHLIELEP--LIH 222
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
K+ ++L K+V + A I+ M RDWI +GR P+GLCGA + ++A + + S +
Sbjct: 223 KYCEKLQFAEKTKQVAEDALKIIKRMNRDWIVSGRHPAGLCGACIILAARMNNFQRSVRE 282
Query: 240 II 241
++
Sbjct: 283 VV 284
>gi|449296571|gb|EMC92590.1| hypothetical protein BAUCODRAFT_77565 [Baudoinia compniacensis UAMH
10762]
Length = 809
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 22/244 (9%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSE-------Y 63
D C CG L D N + TF ++A G + + G F+ RT +
Sbjct: 46 DGMKICLSCGTQLADVNIVADVTFEEDARGAATVQGGFIGENARHARTFGPKAFRRIGGV 105
Query: 64 GASRERLME---KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
G R E KA + + LNI +D+ A+R +G+A NFT GR T++V
Sbjct: 106 GGERNSTQEAENKARRTLASICPRLNI--TDDYSIQAQRLFGLAARLNFTSGRSTDEVVG 163
Query: 121 SCLYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ-VDPSIF 178
+CL+ ACR+ + LL+D ++ +INV+ LG VY LC+ L E+ ++Q VD
Sbjct: 164 ACLFAACRKNPQNSVLLMDIADIFHINVFRLGEVYKNLCKDLCYHKENLPIQQLVDVEPL 223
Query: 179 LHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+ K+ +L G + V + A IL M RDW+ TGR P+G+CGA + ++A + + S
Sbjct: 224 IQKYCRKLEFGTRTRDVAEDAVKILKRMNRDWMVTGRHPAGICGACIILAARMNNFRRSV 283
Query: 238 SDII 241
+++
Sbjct: 284 REVV 287
>gi|338753408|ref|NP_001229716.1| transcription factor IIIB 90 kDa subunit isoform 5 [Homo sapiens]
gi|332843232|ref|XP_510208.3| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
troglodytes]
gi|397470865|ref|XP_003807032.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
paniscus]
gi|119602317|gb|EAW81911.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_e
[Homo sapiens]
gi|194380648|dbj|BAG58477.1| unnamed protein product [Homo sapiens]
Length = 562
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 36/222 (16%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDT 279
AAL V+A H DF KE+ V KV S + + L + +DT
Sbjct: 116 AALLVAARMH-----------DFRRTVKEVISVV---------KVCESTLRKRLTEFEDT 155
Query: 280 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+ +EFM I LE DPP++ +R+ +K
Sbjct: 156 PT------SQLTIDEFMKID--LEEECDPPSYTAGQRKLRMK 189
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 322 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 381
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 382 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 414
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 415 EQKKISSKINYSVLRGL 431
>gi|338753402|ref|NP_001229715.1| transcription factor IIIB 90 kDa subunit isoform 4 [Homo sapiens]
gi|332843234|ref|XP_003314588.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
troglodytes]
gi|397470871|ref|XP_003807035.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 4 [Pan
paniscus]
Length = 584
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 36/222 (16%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDT 279
AAL V+A H DF KE+ V KV S + + L + +DT
Sbjct: 116 AALLVAARMH-----------DFRRTVKEVISVV---------KVCESTLRKRLTEFEDT 155
Query: 280 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+ +EFM I LE DPP++ +R+ +K
Sbjct: 156 PT------SQLTIDEFMKID--LEEECDPPSYTAGQRKLRMK 189
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 62/159 (38%), Gaps = 49/159 (30%)
Query: 379 DATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIW 416
D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 322 DPKDASGDGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKAELW 381
Query: 417 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 476
N EYL EQ KEA A K EL KE + K
Sbjct: 382 MRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPK 414
Query: 477 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 415 KSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 453
>gi|221040424|dbj|BAH11919.1| unnamed protein product [Homo sapiens]
Length = 584
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 36/222 (16%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDT 279
AAL V+A H DF KE+ V KV S + + L + +DT
Sbjct: 116 AALLVAARMH-----------DFRRTVKEVISVV---------KVCESTLRKRLTEFEDT 155
Query: 280 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+ +EFM I LE DPP++ +R+ +K
Sbjct: 156 PT------SQLTIDEFMKID--LEEECDPPSYTAGQRKLRMK 189
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 61/154 (39%), Gaps = 49/154 (31%)
Query: 384 ASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIWEEMNR 421
+ DG + S IDD E+D Y+ NE E K +W N
Sbjct: 327 SGDGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKAELWMRENA 386
Query: 422 EYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEA 481
EYL EQ KEA A K EL KE + K++ +
Sbjct: 387 EYLREQREKEARIAKEK------------------ELGIY---------KEHKPKKSCKR 419
Query: 482 KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
+ A TA EA +ML +K++SSKINY VL L
Sbjct: 420 REPIQASTAREAIEKMLEQKKISSKINYSVLRGL 453
>gi|269860898|ref|XP_002650166.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
gi|220066389|gb|EED43872.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
Length = 391
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 12/234 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C +C +CC+ CG + E++ F + + + + G V
Sbjct: 6 CINCGSMAIQTDTTRGIICCEDCGMIQEENMIINTIQFDTSNSNKISMQGKVVNIENKNI 65
Query: 64 GASRERLMEKAFDDMRQMKNA-----LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
G + ++ ++ +KN LN S+ +A ++Y + +A N +KG+
Sbjct: 66 GT---KYIDSSYYIKTTIKNICSKLCLNSKHSE----IAFKWYKLCLANNLSKGKSILYT 118
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
++C+Y++CRQ++ P LLIDFSN L I++Y++G ++L++ + S + +D S++
Sbjct: 119 LSACIYISCRQEATPHLLIDFSNVLRIDMYQIGKIFLKIRNTFGLEFNSFDIGGIDMSLY 178
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
LH+F +L +K++ + IL MK+DWI GRKP+ CGAA+ +++ G
Sbjct: 179 LHRFVSQLKFKNSKEIILLSTRILNRMKKDWIMEGRKPNNSCGAAILLASRILG 232
>gi|302886509|ref|XP_003042144.1| hypothetical protein NECHADRAFT_1589 [Nectria haematococca mpVI
77-13-4]
gi|256723053|gb|EEU36431.1| hypothetical protein NECHADRAFT_1589 [Nectria haematococca mpVI
77-13-4]
Length = 670
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 124/234 (52%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG++ +D N +E TF +++ G + + G+++ Q+ G S RE+
Sbjct: 70 TCQTCGRIADDSNIVSEITFGESSNGAAVVHGSYIGADQAGVRSMGPAFRRVGGSEDREK 129
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ +A M+ LN+GES ++ + + +A + NF +GR V A CLY ACR
Sbjct: 130 SIREAKSLMQGYAQQLNVGES--LITAGTQVFKLASSANFVQGRTLASVAAVCLYAACRA 187
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
Q +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 188 QPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 245
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 246 HQETAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVV 299
>gi|351698489|gb|EHB01408.1| Transcription factor IIIB 90 kDa subunit [Heterocephalus glaber]
Length = 638
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 116/225 (51%), Gaps = 36/225 (16%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ +A ++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 74 FFKMAANKSLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 133
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 218
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 134 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 188
Query: 219 LCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKH 276
LCGAAL V+A H DF KE+ V KV S + + L +
Sbjct: 189 LCGAALLVAARMH-----------DFRRTVKEVISVV---------KVCESTLRKRLTEF 228
Query: 277 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+DT + +EFM I LE DPP++ +R+ +K
Sbjct: 229 EDTPT------SQLTIDEFMKID--LEEECDPPSYTAGQRKLRMK 265
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 85/200 (42%), Gaps = 42/200 (21%)
Query: 327 NSSFERESDSPFMSRVDKVQSPEP-------ESIGVPKNCTTQTASNEGEGDHTK----T 375
N F RE D V+SPE ES+ P TA++ G D + +
Sbjct: 339 NKDFYRELLGGGSGSSDAVESPEEGGQPLALESLLGP----LPTAASLGISDSIRECISS 394
Query: 376 PGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 435
P D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 395 PSRDPKDTSGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIA 454
Query: 436 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 495
K EL KE + K++ + + A +A EA
Sbjct: 455 KEK------------------ELGIY---------KEHKPKKSCKRREPIQASSAREAIE 487
Query: 496 RMLTKKRLSSKINYDVLEKL 515
+ML +K++SSKINY VL L
Sbjct: 488 KMLEQKKISSKINYSVLRDL 507
>gi|429852309|gb|ELA27452.1| transcription factor tfiiib complex subunit brf1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 729
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 20/235 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNF-------VRTIQSEY---GAS--RER 69
C CG+V +D N E F + ++G + + G++ VRT+ + G S RE+
Sbjct: 81 VCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYIAADQAGVRTLGPAFRRVGGSDDREK 140
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ + LN+GE+ V+ A + + +A NF +GR V A CLY ACR
Sbjct: 141 SIREARSLMQGYAHQLNLGEN--TVNTAVQIFKLASQANFVQGRTLVMVAAVCLYAACRT 198
Query: 130 KSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
+ KP +L+D ++ +NV++LG + L ++I D N QV P +++ +L
Sbjct: 199 E-KPCRIMLMDLADLTQLNVFKLGRAFKALNATVFIFD--NGEGQVFPEDLIYRLASKLE 255
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+V + A ++ MK+DWI GR+PSG+CGA L ++A H + + +I+
Sbjct: 256 FKHMTNRVAEDAIRLVQRMKQDWIVMGRRPSGICGACLLMAARMHNFRRTVREIV 310
>gi|340522164|gb|EGR52397.1| RNA polymerase III transcription initiation factor B complex
component [Trichoderma reesei QM6a]
Length = 679
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N +E F + ++G + + G FV Q+ G S RE+
Sbjct: 60 TCQTCGRVADDSNIVSEVQFGETSSGAAMVQGTFVGADQAGVRGMGPAFRRVGGSEDREK 119
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LNI SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 120 SIREARGLMQGYAQQLNI--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 177
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 178 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIG--ADGLIPVYPEDLIWRFATKMEF 235
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 236 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTIREVV 289
>gi|358399904|gb|EHK49241.1| hypothetical protein TRIATDRAFT_290021 [Trichoderma atroviride IMI
206040]
Length = 734
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N +E F + ++G + + G FV Q+ G S RE+
Sbjct: 78 TCQTCGRVADDSNIVSEVQFGETSSGAAMVQGTFVGADQAGVRGMGPAFRRVGGSEDREK 137
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LNI SD +V + + +A NF +GR V A CLY ACR
Sbjct: 138 SIREARGLMQGYAQQLNI--SDSLVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRA 195
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 196 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIG--ADGLIPVYPEDLIWRFATKMEF 253
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 254 RQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVV 307
>gi|380484171|emb|CCF40167.1| Brf1-like TBP-binding domain-containing protein [Colletotrichum
higginsianum]
Length = 734
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 20/235 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNF-------VRTIQSEY---GAS--RER 69
C CG+V +D N E F + ++G + + G++ VRT+ + G S RE+
Sbjct: 87 VCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYIAADQAGVRTMGPAFRRVGGSDDREK 146
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD V+ A + + +A NF +GR V A CLY ACR
Sbjct: 147 SIREARSLMQGYAQRLNL--SDNTVNTAVQVFKLASQANFVQGRTLVMVAAVCLYTACRT 204
Query: 130 KSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
+ +P +LID ++ INV++LG + L +V+YI N V P L + +L
Sbjct: 205 E-RPCKIMLIDLADLTQINVFKLGRAFKALNRVVYIF--GNGEAPVFPEDILFRLASKLE 261
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+V + A ++ MK+DWI GR+PSG+CGA L ++A H + + +++
Sbjct: 262 FKHMTNRVAEDAVRLVQRMKQDWIVMGRRPSGICGACLLIAARMHNFRRTTREVV 316
>gi|344303886|gb|EGW34135.1| hypothetical protein SPAPADRAFT_59552, partial [Spathaspora
passalidarum NRRL Y-27907]
Length = 461
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 103/177 (58%), Gaps = 7/177 (3%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE+ + A +R++ +L I D I A ++ +A+ NF +GRR+ V A+CLY+
Sbjct: 3 SREQTLLNAKRKIRRIAASLQI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYV 60
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR++ +LIDFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++
Sbjct: 61 ACRKEKTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFAEK 116
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
L N KV A + M DWI GR+P+G+ GA + ++A + + + ++I+
Sbjct: 117 LDFRDKNTKVVKDAVKLAHRMSADWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIV 173
>gi|410963029|ref|XP_003988069.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Felis catus]
Length = 563
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 36/222 (16%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDT 279
AAL V+A H + + ++I KV S + + L + +DT
Sbjct: 116 AALLVAARMHDFRRTVKEVISVV--------------------KVCESTLRKRLTEFEDT 155
Query: 280 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+ +EFM I LE DPP++ +R+ +K
Sbjct: 156 PT------SQLTVDEFMKID--LEEECDPPSYTAGQRKLRLK 189
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D T DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 323 DPTDACGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK 382
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 383 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 415
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 416 EQKKISSKINYSVLRDL 432
>gi|440798133|gb|ELR19201.1| Molybdenum cofactor sulfurase, putative [Acanthamoeba castellanii
str. Neff]
Length = 579
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 134/281 (47%), Gaps = 34/281 (12%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE +E A + M +L G + A R + +A+ NF +GR++E V +SCLY+
Sbjct: 8 SREITLENAKRRISSMAGSL--GLTAHHTESAFRLFLLALQHNFVRGRKSEYVISSCLYV 65
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR++ +LIDF++ LN+ +Y LG +L C +L + L +DPS+++ +F +
Sbjct: 66 VCRREKTAHMLIDFADVLNVPLYYLGHTFLDFCSLLNLQ-----LPVIDPSLYIERFAAK 120
Query: 186 LLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244
L G V +TA ++ M+RDWI TGR+P+G+CGA D
Sbjct: 121 LGFGDKTHAVANTALRLVQRMRRDWIITGRRPAGICGA--------------------DL 160
Query: 245 MAR--KKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSC-YEEFMTISEG 301
+ R +AAN P + K V +K G P G+ R C E +++
Sbjct: 161 LCRWLVLVDAAALAANTPIDLTKYPADLVVTSFYKIFGHPTGIGIARICDSESAALLNKA 220
Query: 302 LEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 342
GG A ER +++ SA E FE + PF S V
Sbjct: 221 FFGGGTVEASLSTERYHVLRKSASER--FE-DGTVPFTSIV 258
>gi|46116324|ref|XP_384180.1| hypothetical protein FG04004.1 [Gibberella zeae PH-1]
Length = 762
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG++ +D N E TF ++++G + + G+F+ Q+ G S RE+
Sbjct: 82 TCQTCGRISDDSNIVAEVTFGESSSGAAVVHGSFIGADQAGVRSMGPAFRRVGGSEDREK 141
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 142 SIREAKGLMQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 199
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 200 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 258 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVV 311
>gi|310801628|gb|EFQ36521.1| Brf1-like TBP-binding domain-containing protein [Glomerella
graminicola M1.001]
Length = 736
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 20/235 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY---GAS--RER 69
C CG+V +D N E F + ++G + + G++V RT+ + G S RE+
Sbjct: 85 VCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYVAADQAGVRTMGPAFRRVGGSDDREK 144
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD V+ A + + +A NF +GR V A CLY ACR
Sbjct: 145 SIREARSLMQGYAQRLNL--SDNTVNTAVQVFKLASQANFVQGRTLVMVAAVCLYTACRT 202
Query: 130 KSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
+ +P +LID ++ INV++LG + L +V+YI N V P L + +L
Sbjct: 203 E-RPCKIMLIDLADLTQINVFKLGRAFKALNRVVYIF--GNGEAPVFPEDILFRLASKLE 259
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+V + A ++ MK+DWI GR+PSG+CGA L ++A H + + +++
Sbjct: 260 FKHMTNRVAEDAVRLVHRMKQDWIVMGRRPSGICGACLLIAARMHNFRRTTREVV 314
>gi|410963031|ref|XP_003988070.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Felis catus]
Length = 587
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 36/222 (16%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDT 279
AAL V+A H + + ++I KV S + + L + +DT
Sbjct: 116 AALLVAARMHDFRRTVKEVISVV--------------------KVCESTLRKRLTEFEDT 155
Query: 280 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+ +EFM I LE DPP++ +R+ +K
Sbjct: 156 PT------SQLTVDEFMKID--LEEECDPPSYTAGQRKLRLK 189
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 62/161 (38%), Gaps = 51/161 (31%)
Query: 379 DATTEASDGSDNFSDIDDFEVDG------------------------YLHNEEEKHYKKI 414
D T DG + S IDD E+D Y+ NE E K
Sbjct: 323 DPTDACGDGELDLSGIDDLEIDRVSVRAASARAARGLCWPHRPALLRYILNEAEARVKAE 382
Query: 415 IWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ 474
+W N EYL EQ KEA A K EL KE +
Sbjct: 383 LWMRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHK 415
Query: 475 QKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 416 PKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDL 456
>gi|408395340|gb|EKJ74522.1| hypothetical protein FPSE_05272 [Fusarium pseudograminearum CS3096]
Length = 759
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG++ +D N E TF ++++G + + G+F+ Q+ G S RE+
Sbjct: 82 TCQTCGRISDDSNIVAEVTFGESSSGAAVVHGSFIGADQAGVRSMGPAFRRVGGSEDREK 141
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 142 SIREAKGLMQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 199
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 200 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 258 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVV 311
>gi|94732974|emb|CAK11391.1| novel protein (zgc:63497) [Danio rerio]
Length = 606
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 8/144 (5%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ + V+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 25 FFKMVVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLAR 84
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPS 217
L I + VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PS
Sbjct: 85 ELCINAPA-----VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPS 138
Query: 218 GLCGAALYVSALTHGLKFSKSDII 241
GLCGAAL V+A H + + ++I
Sbjct: 139 GLCGAALLVAARMHEFRRTVKEVI 162
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 45/171 (26%)
Query: 348 PEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 404
P S+G+ + C T+T + E + D G + ID+ E++ Y+
Sbjct: 337 PSAASLGLTDSIRQCITETTNVEEKSD--------------SGELDLDGIDEDEIEKYIL 382
Query: 405 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 464
NE E K +W + N EYL EQ KE A K + +YK P+ +E A+
Sbjct: 383 NEIEVEAKTELWMKQNEEYLREQKEKEERIAKEKE--QGTYKEKPKKPSKKREPILAS-- 438
Query: 465 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
TA EA +ML +K++SSKINYDVL L
Sbjct: 439 ------------------------TAGEAIEKMLEQKKISSKINYDVLRDL 465
>gi|358386661|gb|EHK24256.1| hypothetical protein TRIVIDRAFT_124308, partial [Trichoderma virens
Gv29-8]
Length = 659
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N +E F + ++G + + G FV Q+ G S RE+
Sbjct: 59 TCQTCGRVADDSNIVSEVQFGETSSGAAMVQGTFVGADQAGVRGMGPAFRRVGGSEDREK 118
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LNI SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 119 SIREARGLMQGYAQQLNI--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 176
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 177 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIG--TDGLIPVYPEDLIWRFATKMEF 234
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 235 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTIREVV 288
>gi|226289115|gb|EEH44627.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 776
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 92/157 (58%), Gaps = 4/157 (2%)
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 138
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 112 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 169
Query: 139 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 197
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 170 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGTSMMQVASE 229
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 230 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 266
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 466 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 507
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 501
+E VA +++++ R + A T EA R+ML K+
Sbjct: 508 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEAMRKMLEKR 567
Query: 502 RLSSKINYDVLEKLFDD 518
S KINY +LE++++D
Sbjct: 568 GFSKKINYRLLEEMYED 584
>gi|346318705|gb|EGX88307.1| Transcription factor TFIIB, putative [Cordyceps militaris CM01]
Length = 722
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 18/241 (7%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYG 64
RP C CG+V +D N E F + ++G + + G+++ Q+ G
Sbjct: 73 RPNVVDGTCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYIGADQAGVRSMGPAFRRVG 132
Query: 65 AS--RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
S RE+ + +A M+ LN+ SD +V + + +A NF +GR V A C
Sbjct: 133 GSEDREKSIREARGLMQGYAQQLNV--SDSLVTAGTQVFKLASGANFIQGRTLASVAAVC 190
Query: 123 LYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
LY ACR + +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +
Sbjct: 191 LYAACRAEPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWR 248
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F ++ KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++
Sbjct: 249 FATKMEFRQETAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREV 308
Query: 241 I 241
+
Sbjct: 309 V 309
>gi|342876335|gb|EGU77962.1| hypothetical protein FOXB_11527 [Fusarium oxysporum Fo5176]
Length = 753
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 123/234 (52%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG++ +D N E TF ++++G + + G+++ Q+ G S RE+
Sbjct: 82 TCQTCGRISDDSNIVAEVTFGESSSGAAVVHGSYIGADQAGVRSMGPAFRRVGGSEDREK 141
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 142 SIREAKGLMQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 199
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 200 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 258 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVV 311
>gi|348527462|ref|XP_003451238.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Oreochromis niloticus]
Length = 606
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 6/146 (4%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
A FY +A+ ++ T+GR+ V A+C+Y+ CR + P +L+D S+ L +NVY LG +L
Sbjct: 21 ALNFYKMALIKHLTRGRKASHVIAACIYMVCRTEGTPHMLLDLSDILQVNVYVLGRTFLV 80
Query: 157 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRK 215
L + L I + +DP +++ +F L G ++V TA ++ MKRDW+ TGR+
Sbjct: 81 LARELCINAAA-----IDPCLYIPRFAQMLEFGDKTREVSMTALRLVQRMKRDWMHTGRR 135
Query: 216 PSGLCGAALYVSALTHGLKFSKSDII 241
PSGLCGAAL V+A H + + +I+
Sbjct: 136 PSGLCGAALLVAARLHDFRRTVKEIV 161
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 27/132 (20%)
Query: 384 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 443
A G + S I+D E++ YL +++E K +W N YL+EQ KEA A K
Sbjct: 372 ADSGELDLSGINDSEIELYLLSDKEVKIKTALWMAENSTYLKEQKEKEAKIAKEK----- 426
Query: 444 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 503
A + K RK + R A TA EA +ML +KR+
Sbjct: 427 -------------------ALGIYKERKPRGPNRKHPPIR---ANTADEAIEKMLEQKRI 464
Query: 504 SSKINYDVLEKL 515
SSKINYDVL+ L
Sbjct: 465 SSKINYDVLKDL 476
>gi|400595952|gb|EJP63740.1| Brf1-like TBP-binding domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 722
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N E F + ++G + + G+++ Q+ G S RE+
Sbjct: 79 TCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYIGADQAGVRSMGPAFRRVGGSEDREK 138
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD +V + + +A NF +GR V A CLY ACR
Sbjct: 139 SIREARGLMQGYAQQLNV--SDSLVAAGTQVFKLASGANFIQGRTLASVAAVCLYAACRA 196
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 197 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 254
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 255 RQETAKVAEDAVRLVKRMSRDWLVMGRRPSGICGACLLMAARMHNFRRTVREVV 308
>gi|401826311|ref|XP_003887249.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
gi|392998408|gb|AFM98268.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
Length = 395
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 123/520 (23%), Positives = 219/520 (42%), Gaps = 136/520 (26%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTIQSE 62
CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 4 CSNCSSSDFAEDTAQGAVYCTTCGMVQEENAIVASLNF--NTEGPKATLNGQIV------ 55
Query: 63 YGASRERLMEKAFDDMRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
G + D +KN ++ +G + V + R+Y + + N +KG+
Sbjct: 56 -GIDSRNVGTGFVDSSYYIKNTISGICASLGLGIDHVECSFRWYKLLLQYNLSKGKSILY 114
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +DPS+
Sbjct: 115 TLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKSFLKITSMLGIE-----IPLIDPSL 169
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ +F R L + +V + +++ MKRDWI GR+P+ LCGAAL +++ G + S
Sbjct: 170 YMPRFVSR-LRFESSEVLGLSLRLISRMKRDWIVVGRRPNNLCGAALLIASRIVGEERSI 228
Query: 238 SDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT 297
+I K +H VS +N+ L K+ G + L EEF
Sbjct: 229 YEI-------AKIVH-----------VSVSTINKRL---KEIGDTESANL---SIEEFN- 263
Query: 298 ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPK 357
+ +E DPP+ +V E K E SS P+
Sbjct: 264 -ATWIEKEEDPPSVKVKRMEMAKKQECESGSS----EMIPY------------------- 299
Query: 358 NCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWE 417
+T ++S S+ SD ++ E + + + EE ++I+WE
Sbjct: 300 ----------------------STPQSSVDSEALSDSEEIERN--ILSPEESKRREIVWE 335
Query: 418 EMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR 477
EM E++ E+ + AK+++ +K K+++R
Sbjct: 336 EMYGEFMREREKR------AKSSV----------------------------KKGKRRRR 361
Query: 478 AAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
E + +EA R + K++S K+NY +E +FD
Sbjct: 362 NEEFG------SIVEAFRSL--DKKISGKLNYQAIESIFD 393
>gi|358254676|dbj|GAA56126.1| transcription initiation factor brf1 [Clonorchis sinensis]
Length = 729
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 155/340 (45%), Gaps = 63/340 (18%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQ 80
L C CG VL ++ +E FV+ +AG S G FV D+ R+
Sbjct: 20 LVCLDCGMVLSENVICSEVEFVETSAGVSAAVGRFVS------------------DETRR 61
Query: 81 MKNAL--NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 138
+ + ++ ++I A RFY A+ R T+GR QV ASC+YLA RQ +L+D
Sbjct: 62 RIDTICGHLRLGNDIATSAFRFYQSALFRGITRGRGALQVAASCVYLAARQLRVNLMLLD 121
Query: 139 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC-DT 197
S+ + INVY LG Y +L + L+++ + ++DP +++ +F +L G V T
Sbjct: 122 LSDAVGINVYVLGHCYTELRRRLHLS-----IPEMDPCLYIERFASQLEFGDKMPVVATT 176
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAA 257
A +L MK+DW+TTGR+PSGL AAL V+A H ++ D+ AR + + A
Sbjct: 177 AMRLLQRMKKDWLTTGRRPSGLAAAALLVAARIHEFNRNEEDV-----ARIARISQQTAR 231
Query: 258 NLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERE 317
+ ++ G+ L E+F T+ E DPPAF A +
Sbjct: 232 K----------------RLEEFGRTPTSAL---SIEDFFTVD--YEEEQDPPAFTSARKS 270
Query: 318 ----------RMVKASAEENSSFERESDSPFMSRVDKVQS 347
+ SAE N ER D S +DK S
Sbjct: 271 DESVKELDEASFARISAEIN-ELERRIDVELQSLIDKRSS 309
>gi|322696764|gb|EFY88552.1| hypothetical protein MAC_05446 [Metarhizium acridum CQMa 102]
Length = 742
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N E F ++++G + + G+F+ Q+ G + RE+
Sbjct: 81 TCQTCGRVADDSNIVAEVQFGESSSGAAVVHGSFIGADQAGVRSMGPAFRRVGGTEDREK 140
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ ES +V + + +A NF +GR V A CLY ACR
Sbjct: 141 SIREARGLMQGYAQQLNVSES--LVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRA 198
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 199 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 256
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 257 HQETAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVV 310
>gi|303389255|ref|XP_003072860.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
gi|303302003|gb|ADM11500.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
Length = 395
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 124/523 (23%), Positives = 218/523 (41%), Gaps = 136/523 (26%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTI 59
M CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 1 MGICSNCSSGDFAEDTAQGAVYCTVCGMVQEENAIVASLNF--NTEGPKATLNGQIV--- 55
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRR 114
G + D +KN ++ +G + V + R+Y + + N +KG+
Sbjct: 56 ----GMDSRNVGTGFVDSSYYIKNTISGICASLGLGVDHVECSFRWYKLLLQYNLSKGKS 111
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +D
Sbjct: 112 ILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNMLGID-----IPLID 166
Query: 175 PSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
PS+++ +F R L + +V + +++ MKRDWI GR+P+ LCGAAL +++ G +
Sbjct: 167 PSLYMPRFVSR-LRFESTEVLGLSLRLISRMKRDWIVVGRRPNNLCGAALLIASRIVGEE 225
Query: 235 FSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEE 294
S +I K +H VS +N+ L K+ G + L EE
Sbjct: 226 RSIYEI-------AKIVH-----------VSVSTINKRL---KEIGDTESANL---SIEE 261
Query: 295 FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIG 354
F + +E DPPA + M R++ + E ES
Sbjct: 262 FN--ATWIEKEEDPPAVK--------------------------MKRMEMAKKQECES-- 291
Query: 355 VPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKI 414
G P +T ++S S+ SD ++ E + + + EE ++I
Sbjct: 292 ---------------GSSEVIP--YSTPQSSVDSEILSDSEEIERN--ILSPEETKRREI 332
Query: 415 IWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ 474
+WEEM E++ E+ + ++ K+
Sbjct: 333 VWEEMYGEFMREREKRTKSSV-------------------------------------KK 355
Query: 475 QKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
KR + + G + +EA R + KR+S K+NY +E +FD
Sbjct: 356 GKRRRKNEEFG---SIVEAFRSL--DKRISGKLNYQAIESIFD 393
>gi|256084250|ref|XP_002578344.1| transcription initiation factor brf1 [Schistosoma mansoni]
gi|353229135|emb|CCD75306.1| putative transcription initiation factor brf1 [Schistosoma mansoni]
Length = 770
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 122/237 (51%), Gaps = 15/237 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV--RTIQSEYGASRERLMEKAFDDM 78
L C CG VL ++ S+E FV+ + GQ G FV + + SR+ KA +
Sbjct: 20 LICLDCGMVLGENVISSEVEFVETSTGQCAAVGRFVSDESQAGNFKESRQATENKARRRI 79
Query: 79 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 138
+ L +G ++ A R+Y A+ R T+GR V A C+YLA RQ +L+D
Sbjct: 80 DTICGQLRLG--NDTAASAFRYYQSALFRGLTRGRSAFTVAAGCIYLAARQLRVNLMLLD 137
Query: 139 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDT 197
S+ + +NVY LG VY L + L +A + ++DP I++ +F +L G V T
Sbjct: 138 LSDAVGVNVYVLGRVYADLKKRLNLA-----IPEMDPCIYIDRFASQLEFGDKVSTVATT 192
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI-----IEDFMARKK 249
A +L MK+DWI TGR+PSGL AAL V+A H ++ D+ I ARK+
Sbjct: 193 AMRLLQRMKKDWIATGRRPSGLAAAALLVAARIHEFNRTEEDVARIARISQSTARKR 249
>gi|225681951|gb|EEH20235.1| transcription initiation factor IIIB chain BRF [Paracoccidioides
brasiliensis Pb03]
Length = 767
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDD 77
D C CG V+ + N +E TF ++A+G + + G FV QS +G S
Sbjct: 65 DGMKVCSGCGTVVSESNIVSEITFGESASGAAIVQGTFVGADQS-HGRS----------- 112
Query: 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 136
ES EI GRRT+ V A CLY+ACR Q +L
Sbjct: 113 GGPGFQRGGGMESREITE--------------QNGRRTKTVAAVCLYIACRRQDGNTVML 158
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 195
IDF++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 159 IDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGTSMMQVA 218
Query: 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
A I+ M RDW+ TGR+P+G+CGAAL ++A + +
Sbjct: 219 SEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFR 257
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 396 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 455
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 457 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 498
Query: 456 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 501
+E VA +++++ R + A T EA R+ML K+
Sbjct: 499 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEAMRKMLEKR 558
Query: 502 RLSSKINYDVLEKLFDD 518
S KINY +LE++++D
Sbjct: 559 GFSKKINYRLLEEMYED 575
>gi|405954038|gb|EKC21579.1| Transcription factor IIIB 90 kDa subunit [Crassostrea gigas]
Length = 503
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 109/230 (47%), Gaps = 35/230 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C+ C P C CG VLED +E F ++A G S + G FV T S+
Sbjct: 7 CTHCGCTEIDKDPARGDAVCTNCGSVLEDQIIVSEIQFEEHATGASSVIGQFVSTDGSKS 66
Query: 63 --YGASRERLMEK-----AFDDMRQMKNALNI--GESDEIVHVAKRFYGIAVARNFTKGR 113
G S M+K FD+ R+ L + + + A F+ +AV R T+GR
Sbjct: 67 HSLGISFPHGMKKESRTVTFDNGRKRIQQLGVQLKLNQHCIDTAFNFFKMAVNRRMTQGR 126
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
+T V A+CLY+ INVY LG YLQL + L I + +
Sbjct: 127 KTTHVIAACLYI-------------------INVYSLGKTYLQLSRALCIN-----IPAI 162
Query: 174 DPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGA 222
DP +++ +F +L G +V TA +++ MKRDW+ TGR+PSGLCGA
Sbjct: 163 DPCLYIPRFAHKLEFGEKTHEVSMTALRLVSRMKRDWMHTGRRPSGLCGA 212
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 43/174 (24%)
Query: 346 QSPEPESIG---VPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG- 401
+ P E+IG V K C NE EG+ K A DG + + IDD E++
Sbjct: 274 RKPLQETIGMIDVVKKCV-----NEDEGESEK---------AEDGELDLTGIDDDELEKQ 319
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
++ EEE K +W N++YL KE A + E KN PE + +
Sbjct: 320 FVLTEEEIELKTNLWMAENKDYLIALKEKEERLAKER---EEEAKN-PEKKKPKRTRKKR 375
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
A +A EA +++ ++++S+KINYDVL L
Sbjct: 376 VPIQAA---------------------SAEEAIYKVIHERKISNKINYDVLNDL 408
>gi|452988988|gb|EME88743.1| hypothetical protein MYCFIDRAFT_107563, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 654
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 32/248 (12%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY-----GA 65
+ QL C C + + + ++ TF A G++ + G V RT+ + G
Sbjct: 27 EGQLICKNCYTQVSESDIVSDITFADAANGKATVQGGTVSDNSRHARTLGAGAFHKVGGG 86
Query: 66 SRERLME------KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
R L + KA + + L I E+ + A + + +A NF+ GR+T++V
Sbjct: 87 ERNTLADIQHAGKKALE---ALTPKLPIEET--VAMQANQIWTLAANINFSAGRKTDEVV 141
Query: 120 ASCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ--VDPS 176
A+CLY ACR QK LL+D + + INV+ LG VY +C+ LY +ES V +Q VD
Sbjct: 142 AACLYAACRRQKQNKVLLMDIAELVKINVFRLGEVYKDMCRELYFNNES-VGQQHLVDLE 200
Query: 177 IFLHKFTDRLLPGGNKKVCDTARD---ILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
++K+ D+L G K D A D I+ M RDWI +GR P+GLCGA + ++A +
Sbjct: 201 PLIYKYCDKLQFGS--KTQDVAADALKIIKRMNRDWIVSGRHPAGLCGACIILAARMNNF 258
Query: 234 KFSKSDII 241
+ + +++
Sbjct: 259 QRTVREVV 266
>gi|449329122|gb|AGE95396.1| transcription initiation factor tfIII b subunit [Encephalitozoon
cuniculi]
Length = 395
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 134/269 (49%), Gaps = 28/269 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTIQSE 62
CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 4 CSNCSCEDFAEDTAQGAVYCTTCGMVQEENAIVASLNF--NTEGPKATLNGQIV------ 55
Query: 63 YGASRERLMEKAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
G + D +KN + ++G + V + R+Y + + N +KG+
Sbjct: 56 -GIDSRNVGTGFVDSSYYIKNTIGGICASLGLGVDHVECSFRWYKLLLQYNLSKGKSILY 114
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +DPS+
Sbjct: 115 TLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNILGID-----IPLIDPSL 169
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ +F RL N+ + + R +++ MKRDWI GR+P+ LCGAAL +++ G + S
Sbjct: 170 YMPRFVSRLRFESNEVLGLSLR-LISRMKRDWIVVGRRPNNLCGAALLIASRIVGEERSI 228
Query: 238 SDI-------IEDFMARKKELHEGVAANL 259
+I + R KE+ + +ANL
Sbjct: 229 YEIAKIVHVSVSTINKRLKEIGDTESANL 257
>gi|322703408|gb|EFY95017.1| hypothetical protein MAA_09466 [Metarhizium anisopliae ARSEF 23]
Length = 738
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 18/234 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N E F ++++G + + G+F+ Q+ G + RE+
Sbjct: 80 TCQTCGRVADDSNIVAEVQFGESSSGAAVVHGSFIGADQAGVRSMGPAFRRVGGTEDREK 139
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ L++ ES +V + + +A NF +GR V A CLY ACR
Sbjct: 140 SIREARGLMQGYAQQLSVSES--LVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRA 197
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 198 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 255
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 256 HQETAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVV 309
>gi|19173589|ref|NP_597392.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
gi|19170795|emb|CAD26569.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
Length = 395
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 134/269 (49%), Gaps = 28/269 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTIQSE 62
CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 4 CSNCSCEDFAEDTAQGAVYCTTCGMVQEENAIVASLNF--NTEGPKATLNGQIV------ 55
Query: 63 YGASRERLMEKAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
G + D +KN + ++G + V + R+Y + + N +KG+
Sbjct: 56 -GIDSRNVGTGFVDSSYYIKNTIGGICASLGLGVDHVECSFRWYKLLLQYNLSKGKSILY 114
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +DPS+
Sbjct: 115 TLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNMLGID-----IPLIDPSL 169
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ +F RL N+ + + R +++ MKRDWI GR+P+ LCGAAL +++ G + S
Sbjct: 170 YMPRFVSRLRFESNEVLGLSLR-LISRMKRDWIVVGRRPNNLCGAALLIASRIVGEERSI 228
Query: 238 SDI-------IEDFMARKKELHEGVAANL 259
+I + R KE+ + +ANL
Sbjct: 229 YEIAKIVHVSVSTINKRLKEIGDTESANL 257
>gi|320589780|gb|EFX02236.1| transcription factor tfiiib complex subunit [Grosmannia clavigera
kw1407]
Length = 829
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 25/241 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----------------RTIQSEYGA 65
C CG+V +D N E TF +N+ G + + G+F+ R +
Sbjct: 90 TCRSCGRVSDDSNIVAEVTFGENSMGAAVVQGSFLSHDQGGVRPMAGIGHRRVAGNGSAE 149
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
+RER + +A M + LNI E V V ++Y +A + NF +GR+ + V A CLY
Sbjct: 150 ARERTLREAKMLMTGYAHQLNIPE--HTVTVGFQYYKLASSANFVQGRKIQNVVAVCLYA 207
Query: 126 ACRQKSKP----FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
ACR+ ++ +LID ++ + V+ LG + +L Q + +A V+ IF +
Sbjct: 208 ACRKSTQANPCKIMLIDLADLVKEEVFFLGRTFKKLLQTIDVAARDVQPIYVEDLIF--R 265
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F +L KV +TA ++ M RDW+ GR+P+G+CGA L ++A + + + ++
Sbjct: 266 FAAKLEFDTMTNKVAETAVRLVQRMDRDWMVMGRRPAGICGACLIMAARMYNFRRTVREV 325
Query: 241 I 241
+
Sbjct: 326 V 326
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
DD EV L +E E K+ IW NR YL + +E A
Sbjct: 659 DDPEVQFCLLSEAEAAAKEKIWMNENRAYLRMRQEREFRAK------------------- 699
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
AAA ++R+ ++ + E + S PA T EA + ++ S +INYD + +
Sbjct: 700 ----MAAANGTKKQTRRRLKKPKIGEGQTS-PATTPGEAAVEAMERRGFSKRINYDAMRR 754
Query: 515 LFD 517
+ D
Sbjct: 755 MLD 757
>gi|358422124|ref|XP_875578.3| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Bos taurus]
Length = 595
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 38/222 (17%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+++ T+GRRT V A+CLYL CR + P +L+D S+ L +N+ LG L L +
Sbjct: 1 MAVSKHLTRGRRTAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNLVTLGLSGLLLATL-- 58
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
+ DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 59 -----RCVSSADPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 113
Query: 222 AALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDT 279
AAL V+A H + + ++I KV S + + L + +DT
Sbjct: 114 AALLVAARMHDFRRTVKEVISVV--------------------KVCESTLRKRLTEFEDT 153
Query: 280 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+ +EFM I LE DPP++ +R+ +K
Sbjct: 154 PT------SQLTVDEFMKID--LEEECDPPSYTAGQRKLRLK 187
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 70/172 (40%), Gaps = 46/172 (26%)
Query: 363 TASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVD---------------GYL 403
TA++ G D + +P + DG + S IDD E+D Y+
Sbjct: 301 TAASLGISDSIRECISSPSHEPKDACGDGELDLSGIDDLEIDRVALGVPSEXPCALPQYI 360
Query: 404 HNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAA 463
NE E K +W N EYL EQ KEA A + EL
Sbjct: 361 LNEAEARVKAELWMRENAEYLREQKEKEARIAKER------------------ELGIY-- 400
Query: 464 AAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 401 -------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRGL 445
>gi|356565588|ref|XP_003551021.1| PREDICTED: uncharacterized protein LOC100810175 [Glycine max]
Length = 498
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 100/139 (71%), Gaps = 6/139 (4%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D S+ SDIDD EVD Y+H+EE KH KKI+WE NREYLEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAASKKAFEAKF 169
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR--- 502
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A E +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAETFGQMSNKKREQA 229
Query: 503 ---LSSKINYDVLEKLFDD 518
+++ IN E F++
Sbjct: 230 AKEVAAAINKKAFEAKFEN 248
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 426 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 471
EQAAKE AAA K A EA ++NC E + AA+EL A++ AVAKSRK
Sbjct: 227 EQAAKEVAAAINKKAFEAKFENCSEDILAARELGASSTEAVAKSRK 272
>gi|154314754|ref|XP_001556701.1| hypothetical protein BC1G_04086 [Botryotinia fuckeliana B05.10]
gi|347832015|emb|CCD47712.1| hypothetical protein [Botryotinia fuckeliana]
Length = 726
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA--------- 65
+P C CG V++D N +E F ++++G + + G+ V Q GA
Sbjct: 51 KPQIEDGVCHNCGTVVDDSNIVSEIQFGESSSGAAIVQGSHVGADQG--GAQTMGPAFRR 108
Query: 66 ------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++E + + M+ + N L I SD+++ V + + +A NF +GRRT+ V
Sbjct: 109 AGGGESNKENTLREGKRIMQALANQLGI--SDQVIGVGHQIFKLASMNNFIQGRRTDLVA 166
Query: 120 ASCLYLACRQKSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
A CLY ACR K +P +LIDF++ +NV+ LG + L + + +A ++ + V P
Sbjct: 167 AVCLYSACR-KEQPCRVMLIDFADKSQVNVFTLGKYFKALHKQISLA--TDGILPVLPED 223
Query: 178 FLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+ KF +L +KV D A ++ M DW+ GR+PSG+CGA L ++A + +
Sbjct: 224 LIWKFASKLEFYEQTEKVADDAIRMVRRMSLDWMVMGRRPSGVCGACLILAARMNNFR 281
>gi|396081366|gb|AFN82983.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon romaleae SJ-2008]
Length = 395
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 28/272 (10%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTI 59
M CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 1 MGICSNCSSGDFAEDTAQGAVYCTTCGMVQEENAIVASLNF--NTEGPKATLNGQIV--- 55
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRR 114
G + D +KN ++ +G + V + R+Y + + N +KG+
Sbjct: 56 ----GIDSRNVGTGFVDSSYYIKNTISGICASLGLGIDHVECSFRWYKLLLQYNLSKGKS 111
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +D
Sbjct: 112 ILYTLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKSFLKITTMLGID-----IPLID 166
Query: 175 PSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
PS+++ +F R L + +V + +++ MKRDWI GR+P+ LCGAAL +++ G +
Sbjct: 167 PSLYMPRFVSR-LRFESSEVLGLSLRLISRMKRDWIVVGRRPNNLCGAALLIASRIVGEE 225
Query: 235 FSKSDI-------IEDFMARKKELHEGVAANL 259
S +I + R KE+ + +ANL
Sbjct: 226 RSIYEIAKIVHVSVSTINKRLKEIGDTESANL 257
>gi|356495023|ref|XP_003516380.1| PREDICTED: uncharacterized protein LOC100810140 [Glycine max]
Length = 297
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 91/117 (77%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D S+ SDIDD EVD Y+H+EE KH KKI+WE REYLEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETTYREYLEEQAAKEAAAAASKKAFEAKF 169
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 502
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKR 226
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 426 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 471
EQAAKEA A A K A EA + NC E + AA+ELAA++ AV KSRK
Sbjct: 227 EQAAKEATATANKKAFEAKFGNCSEDILAARELAASSTEAVEKSRK 272
>gi|353234355|emb|CCA66381.1| related to BRF1-TFIIIB subunit, 70 kD [Piriformospora indica DSM
11827]
Length = 632
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 13/177 (7%)
Query: 91 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150
D ++ A+R +A +FTKGR E + A CLY+ C ++ +LIDF++ L INVY L
Sbjct: 104 DSVISTAERHLTLAYQYSFTKGRHIEHIIAVCLYMGCLEQKTSHMLIDFADILRINVYAL 163
Query: 151 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDW 209
G+ YL+ + L ++PSIF+ +F L G + +KV D A I K DW
Sbjct: 164 GSTYLKWLRTLGWKP-----PLLEPSIFITRFVALLEFGEDERKVADDANRIATRFKDDW 218
Query: 210 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANL 259
I GR+ +G+CGAA+Y++A + + S +I++ + R +E +ANL
Sbjct: 219 IHEGRRTAGICGAAIYLAAQMNNYRRSIQEIMQVVKIADTTIIKRLEEFSATASANL 275
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 30/132 (22%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D+ + +D+ E+D Y+ E+E ++ +W E+N +YL AAK + + +K
Sbjct: 477 DDLTGLDEEELDAYICGEDEAQMRERVWTELNLDYLRRLAAKRIRDQSGEDPRPKKHKRK 536
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR-LSSKI 507
+ Q+ P +TA E+ R M R S +I
Sbjct: 537 SKPKQSFT-----------------------------PGKTAFESVRAMAQGNRTFSKRI 567
Query: 508 NYDVLEKLFDDS 519
NY++L++ FDD+
Sbjct: 568 NYNLLKETFDDN 579
>gi|402585748|gb|EJW79687.1| transcription factor TFIIB repeat family protein, partial
[Wuchereria bancrofti]
Length = 426
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 160/332 (48%), Gaps = 50/332 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ F +NA G L G F+ + + + SRE
Sbjct: 24 CMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQLTNLSGVPGLSHQESREITY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + ++ + L I + V+ A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 YKGRKLIEEIASQLRINQ--HCVNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDITQVNVFDLGRTLNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGAK 196
Query: 192 KK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
+K V A ++ MKRDWI TGR+P+GLCGAAL ++A + + +D++
Sbjct: 197 QKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTVADVV--------- 247
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHK--DTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
+V ++E + K + + G+ + L +EF ++ LE DP
Sbjct: 248 --------------RVVHISEAVVKKRLDEFGQTPSSTL---TIDEFTSVD--LEHCEDP 288
Query: 309 PAFQVAERE-RMVKASAEENSSFERESDSPFM 339
PAF+ + R+ R ++ EE + + E + P M
Sbjct: 289 PAFRESRRKARELQLQKEEEALRKIELEMPPM 320
>gi|162606550|ref|XP_001713305.1| TFIIB related factor hBRF [Guillardia theta]
gi|12580771|emb|CAC27089.1| TFIIB related factor hBRF [Guillardia theta]
Length = 394
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 8/238 (3%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C C + ++ C+ CG V+++ + + F+K ++L G + T + +
Sbjct: 3 CYECKNKEIFFDYKNGKIICNCCGYVIKEDISNPDLNFIKENKSSTKLEGKIISTKINHF 62
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
+ + L N LN+ + + + + Y NF ++ + SCL
Sbjct: 63 KNNNQNLNSGIKRKFHIYGNLLNLNQIN--IEKSMTLYLKISEINFVINKKVDLYIISCL 120
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y+ R + P LL+DFS+ I ++G +L++ + L + + +DP IF+H+F
Sbjct: 121 YMISRFEKTPHLLVDFSDISQIRTNKIGVEFLKISKNLKME-----IPIIDPCIFIHRFA 175
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
RLL G K+ +A I+A MKR+W++TGR+PS LCG AL +++ +G +I
Sbjct: 176 SRLLLGKKSGKIITSALRIIARMKRNWLSTGRRPSSLCGVALLIASRMYGFSIDTKEI 233
>gi|389642775|ref|XP_003719020.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351641573|gb|EHA49436.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440475254|gb|ELQ43948.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490906|gb|ELQ70402.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 701
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 25/244 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV--------------RTIQSEYGAS- 66
C CG+V +D N E F + A G + + G++V R I +S
Sbjct: 74 TCRTCGRVADDSNIVAEIQFGETAGGAAVVQGSYVGPDGGVRLSGGQGGRRIAGTNTSSE 133
Query: 67 -RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
RE+ + +A ++ N+LN+ E V+ A + + +A +RNFT+GR + V A CLY
Sbjct: 134 AREKALREARSLIQGFANSLNLPE--RTVNGASQLFKLASSRNFTQGRSSVYVAAMCLYA 191
Query: 126 ACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR+++ +L+D ++ + +V+ LG +Y + N + D +++F
Sbjct: 192 ACRKETSCKIMLMDLADLVQHDVFHLGRMYKAFISDIGAGGNYNPIFVED---LIYRFAA 248
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIED 243
RL G KV TA ++ M RDW+ GR+PSG+CGA L ++A + + + +++
Sbjct: 249 RLEFGDKTNKVASTAVRLVQRMDRDWMVLGRRPSGICGACLIMAARMNNFRRTVREVV-- 306
Query: 244 FMAR 247
F+A+
Sbjct: 307 FIAK 310
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D F+D D EV L +EE K +W N++++ +Q KE A
Sbjct: 539 DEFAD--DPEVMYCLLGKEEVELKTQLWVNQNKDWMRKQQEKEFKA-------------- 582
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
LAA + + K+ R E + S PA +A +AT M+ +++ S +I+
Sbjct: 583 --------RLAATNPPKPGRGNRAKK-PRIGEGQTS-PADSATDATLEMIDRRQFSKRID 632
Query: 509 YDVLEKLF 516
YD + +
Sbjct: 633 YDAVRSML 640
>gi|384496736|gb|EIE87227.1| hypothetical protein RO3G_11938 [Rhizopus delemar RA 99-880]
Length = 582
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 50/241 (20%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C++C + + + C CG VLE++ E TF + A G++ L G+F
Sbjct: 3 CNNCGSNKSEADAASGTVYCVDCGTVLEENTIVAEVTFGETAGGKAILQGSF-------- 54
Query: 64 GASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
A D RQ +L G + +R+Y +AV FT+GR++E V A
Sbjct: 55 ----------AGDSGRQKIASLAHGLRLPERYREAGQRYYNLAVVNRFTRGRKSEHVAA- 103
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
+NV+ LGA +L+LC+VL + +L VDPS ++ +
Sbjct: 104 -----------------------VNVFTLGATFLKLCRVLNL-----ILPHVDPSFYISR 135
Query: 182 FTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F L G ++V A I M RDWI TGR+P+G+CGA L ++A +G + + ++
Sbjct: 136 FAVALDFGDYTQRVAQDAVRIAQRMDRDWIVTGRRPAGICGACLLIAARMNGFRRTLREM 195
Query: 241 I 241
I
Sbjct: 196 I 196
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 390 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 449
N SD+D E++ + EEE K +W N+EYLEE A + + K
Sbjct: 395 NLSDVDCDEIEAMILTEEEVALKTKLWYNANKEYLEEMAVRRLVEKDKGTGKDKRTKG-- 452
Query: 450 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 509
SRK+KQQ PA T EA +++L K+LS KIN
Sbjct: 453 -------------------SRKKKQQV---------PASTPAEAAKQLLATKKLSKKINQ 484
Query: 510 DVLEKLFD 517
V + +F+
Sbjct: 485 AVFDDMFE 492
>gi|393215043|gb|EJD00535.1| hypothetical protein FOMMEDRAFT_159269 [Fomitiporia mediterranea
MF3/22]
Length = 266
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYL 155
A R Y +A+ FTKGR V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG +L
Sbjct: 142 AIRMYTLALEHKFTKGRTNMDVIAVCLYIACRQKETRNYMLIDFSDLLQVNVFELGHTFL 201
Query: 156 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTG 213
QL Q L + L VDPS ++ +F LL G++ KV A ++A RDW++ G
Sbjct: 202 QLVQTLNLR-----LPLVDPSHYISRFAA-LLESGDETLKVAADAARLVARFDRDWMSRG 255
Query: 214 RKPSGLCGAAL 224
R+P G+CG++L
Sbjct: 256 RRPVGICGSSL 266
>gi|393904948|gb|EFO21323.2| BRF1 protein [Loa loa]
Length = 859
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 149/309 (48%), Gaps = 49/309 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ F +NA G L G F+ + + + SRE
Sbjct: 24 CMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQPTNLSGVPGLSHQESREITY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + ++ + L I + V+ A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 YKGRKLIEEIASQLRINQ--HCVNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDITQVNVFDLGRTLNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGTK 196
Query: 192 KK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
+K V A ++ MKRDWI TGR+P+GLCGAAL ++A + + +D++
Sbjct: 197 QKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTVADVV--------- 247
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHK--DTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
+V ++E + K + + G+ + L +EF ++ LE DP
Sbjct: 248 --------------RVVHISEAVVKKRLDEFGQTPSSTL---TIDEFTSVD--LEHCEDP 288
Query: 309 PAFQVAERE 317
PAF+ + R+
Sbjct: 289 PAFRESRRK 297
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 27/144 (18%)
Query: 376 PGVDATTEASDGSD--NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 433
P ++ ++E + ++ + IDD E+D Y+ EEE K W ++N E+L+E +
Sbjct: 408 PIIETSSEKLNSNEELDLEGIDDEEIDTYILTEEEVDLKTRFWMKLNGEHLKEMERRRRE 467
Query: 434 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEA 493
+ + S K++++ K A TA EA
Sbjct: 468 REEEEREKDNSI-------------------------KKRRRTNGIRKKEPIVAATAQEA 502
Query: 494 TRRMLTKKRLSSKINYDVLEKLFD 517
+++ +K+LS+KINYD+L ++ D
Sbjct: 503 MEKVIHEKKLSNKINYDILREIED 526
>gi|312080782|ref|XP_003142747.1| BRF1 protein [Loa loa]
Length = 866
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 149/309 (48%), Gaps = 49/309 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ F +NA G L G F+ + + + SRE
Sbjct: 24 CMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQPTNLSGVPGLSHQESREITY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + ++ + L I + V+ A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 YKGRKLIEEIASQLRINQ--HCVNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDITQVNVFDLGRTLNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGTK 196
Query: 192 KK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
+K V A ++ MKRDWI TGR+P+GLCGAAL ++A + + +D++
Sbjct: 197 QKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTVADVV--------- 247
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHK--DTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
+V ++E + K + + G+ + L +EF ++ LE DP
Sbjct: 248 --------------RVVHISEAVVKKRLDEFGQTPSSTL---TIDEFTSVD--LEHCEDP 288
Query: 309 PAFQVAERE 317
PAF+ + R+
Sbjct: 289 PAFRESRRK 297
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 27/144 (18%)
Query: 376 PGVDATTEASDGSD--NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 433
P ++ ++E + ++ + IDD E+D Y+ EEE K W ++N E+L+E +
Sbjct: 408 PIIETSSEKLNSNEELDLEGIDDEEIDTYILTEEEVDLKTRFWMKLNGEHLKEMERRRRE 467
Query: 434 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEA 493
+ + S K++++ K A TA EA
Sbjct: 468 REEEEREKDNSI-------------------------KKRRRTNGIRKKEPIVAATAQEA 502
Query: 494 TRRMLTKKRLSSKINYDVLEKLFD 517
+++ +K+LS+KINYD+L ++ D
Sbjct: 503 MEKVIHEKKLSNKINYDILREIED 526
>gi|320170859|gb|EFW47758.1| BRF1 protein [Capsaspora owczarzaki ATCC 30864]
Length = 580
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 6/147 (4%)
Query: 96 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 155
+A + AV RNF +GR+T V A+C+YL CR P +++DFS+ +++NV+ LG Y
Sbjct: 1 MAHSVFREAVDRNFIQGRKTLIVVAACVYLVCRHDQSPIMMLDFSDAISVNVFVLGNTYS 60
Query: 156 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGR 214
QLC+VL+ + VDPS+ + +F L G + +V TA ++ MKRDWI GR
Sbjct: 61 QLCKVLH-----KTVPVVDPSLLILRFVSMLEFGSKENEVSRTATRLVQRMKRDWILVGR 115
Query: 215 KPSGLCGAALYVSALTHGLKFSKSDII 241
+P+GLC AA+ ++A HG S+ +II
Sbjct: 116 RPAGLCAAAILLAARMHGFSRSQREII 142
>gi|409041381|gb|EKM50866.1| hypothetical protein PHACADRAFT_31958 [Phanerochaete carnosa
HHB-10118-sp]
Length = 706
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 47/281 (16%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-- 58
M C C V + C +CG V+E++ E TF + + G + + G+FV
Sbjct: 1 MTVCVECGGTVIEYDAAAGNGFCVQCGTVVEENTIVNEVTFGETSTGAAMVQGSFVAQGA 60
Query: 59 ----IQSEYG-----ASRERLM-----------------EKAFDDMRQMKNALNIGESDE 92
+ +G SRE+ + +A + Q+ + SD
Sbjct: 61 THARMGGPFGNRGSSESREQTIANGASYPSCELCFRPDAPQATRKIEQICQHFRL--SDV 118
Query: 93 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLN------- 144
+ A R Y +A+ FT+GRR+ V A C+Y+ACRQK ++ ++LIDFS+ L
Sbjct: 119 VSLAATRLYTLALEHKFTRGRRSMHVVAVCVYVACRQKETRNYMLIDFSDLLQRMLTSAF 178
Query: 145 -INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDI 201
++V+ELG YLQL + L + L +DPS + +F LL G++ +V A +
Sbjct: 179 KVSVFELGHTYLQLVRTLNLR-----LPPIDPSHHISRFA-ALLEFGDETPRVAVDATRL 232
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+A M RDW+ GR+PSG+CGAAL ++A + + S ++I++
Sbjct: 233 VARMDRDWLARGRRPSGICGAALLLAARMNNFRRSVAEIVQ 273
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
++ EEE K+ +W EMNR+YLE AAKA LE PE + + A
Sbjct: 516 FILTEEEVKVKERVWVEMNRDYLEN--------LAAKAELEQMGGETPEKKKRKKRKTA- 566
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFD 517
+ R A + TA E+ + ++ K R S +INYD L LFD
Sbjct: 567 -----------HTKPRDASTPHGA---TAAESVKNLIKKNPRYSKRINYDALRDLFD 609
>gi|440638775|gb|ELR08694.1| hypothetical protein GMDG_03376 [Geomyces destructans 20631-21]
Length = 693
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 121/235 (51%), Gaps = 21/235 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----------RTIQSEYGAS--RER 69
C CG ++E+ +E F ++++G + + G+FV Q G + RE+
Sbjct: 59 CKTCGTIVEESTIVSEIQFGESSSGAAVVQGSFVGAGSGAAKSMGPAFQRAGGGTEDREK 118
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ + M+ I ES +++ + + +A NF +GRR V A CLY A R
Sbjct: 119 TLREGKRIMQGFAGEHKIPES--VLNSGVQIFKLAAMNNFIQGRRMNTVAAVCLYTAAR- 175
Query: 130 KSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
K +P +LIDF++ +NV++LG + L Q + I+ ++ + V P +++F +L
Sbjct: 176 KERPCRVMLIDFADSCGVNVFKLGHTFKALHQKISIS--ADGIMPVLPEDLIYRFATKLE 233
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G + KV ++A ++ M DW+ GR+PSG+CGA L ++A H + + +++
Sbjct: 234 FGQDTTKVAESAVRLVQRMSLDWMVMGRRPSGICGACLILAARMHNFRRTVKEVV 288
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 372 HTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 431
+ + P V AS F+D D EV L +E E K+ IW N+++L +QA K
Sbjct: 522 YAQAPQVSIPMTASVDESEFAD--DPEVANCLLSEAEAAIKEHIWVNANKDWLRDQAVKL 579
Query: 432 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 491
A A +A V + R + Q RAA S PA+ A+
Sbjct: 580 YNQKIADKAPKARRNR------------------VKRPRIGEGQTRAA----SSPAEAAV 617
Query: 492 EATRRMLTKKRLSSKINYDVLEKLFD 517
E +L ++ S +INYD + +F+
Sbjct: 618 E----VLKERTWSKRINYDAIRGIFE 639
>gi|281212344|gb|EFA86504.1| TATA box-binding protein-associated factor [Polysphondylium
pallidum PN500]
Length = 582
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 138/327 (42%), Gaps = 92/327 (28%)
Query: 18 DSQLCCDRCGKVLEDHNFSTE----------ATFVKNAAGQSQLSGNFVRTIQSEYGASR 67
D C CGKV++ N +E TFV + G S+ N R SR
Sbjct: 19 DGSTVCVACGKVIDSANIVSEIQFSDSSGVMGTFVSKSGGGSRSYRNLGRD-------SR 71
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E +E A + + + +N+ + + +A R Y +A+ NFTKGRRT+ V A+CLY+ C
Sbjct: 72 ELSIENARRRLHMIASQVNLKQHH--IDMALRMYQLAIEHNFTKGRRTQNVAATCLYIVC 129
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++S P + F+N L +F ++
Sbjct: 130 RRESTPRI---FANSL-------------------------------------EFEEK-- 147
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMAR 247
++V TA ++A MKRDW+ TGR+PSG+CGA+L+++A HG + +II+
Sbjct: 148 ---TQEVAATALKLVARMKRDWMATGRRPSGICGASLFIAAKMHGFTRTVREIIQ----- 199
Query: 248 KKELHEGVAANLPNNGPKVSGMNE-VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
+ + E L K D K + R EF + +EG
Sbjct: 200 ------------------IVKIGETTLTKRLDEFKQTPASMMR--ISEFEAVE--IEGEC 237
Query: 307 DPPAFQVAERERMVKASAEENSSFERE 333
DPP+F + +A EE +RE
Sbjct: 238 DPPSFTRNREKDAKQARKEELLKLKRE 264
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 390 NFSDIDDFEVDGYLHNEEEKHY-KKIIWEEMNREYLEEQAAK 430
D+ D E+D Y+ +++E Y K +IW EMN+E++ +QA +
Sbjct: 420 TLDDLSDEELDTYIEDDKETIYAKDVIWSEMNKEWIVKQAQR 461
>gi|324516790|gb|ADY46635.1| Transcription factor IIIB 90 kDa subunit, partial [Ascaris suum]
Length = 339
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 146/308 (47%), Gaps = 49/308 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ T+ + + G S L G FV +++ + SRE
Sbjct: 24 CMNCGTVLEESTIVSDVTYQERSGGGSTLVGQFVSHDRAQRHTLSGVPGLMHQESREVTY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + + + L I + + A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 MKGKKLIEGIASQLRINQ--HCIDTAYNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-G 190
LL+DFS+ +NV+ELG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDVTQVNVFELGRTLNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEK 196
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
K+V A ++ MKRDWI TGR+P+GLCGAAL ++A + + DI+
Sbjct: 197 EKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTIGDIV--------- 247
Query: 251 LHEGVAANLPNNGPKVSGMNEVLCKHK--DTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
+V ++E + + + + GK + L +EF + LE DP
Sbjct: 248 --------------RVVHISEAVVRKRLDEFGKTPSSSL---TIDEFAIVD--LENCEDP 288
Query: 309 PAFQVAER 316
PAF+ + R
Sbjct: 289 PAFRESRR 296
>gi|451847520|gb|EMD60827.1| hypothetical protein COCSADRAFT_39548 [Cochliobolus sativus ND90Pr]
Length = 732
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 19/241 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ---SEYGASRERL--ME 72
D + C CGKV ++ +E TF + + G + + G F+ Q + G + L ME
Sbjct: 61 DGTVMCYNCGKVHDESQIVSEVTFGETSGGAAIVEGGFIHANQRHANSMGGTMRGLGGME 120
Query: 73 KAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
KNA+ ++ + + ++ A +Y +A+ F +GRR V A +Y+A
Sbjct: 121 SREQAAMNGKNAIQALGASLNQREAVIEQAFSWYKLAMNHRFIQGRRMRNVAAVSIYMAA 180
Query: 128 R-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE-----SNVLKQVDPSIFLHK 181
R Q +LID + + NV+ LG Y Q ++L D S +++++P + K
Sbjct: 181 RRQPENTLMLIDLAEKIQTNVWALGDTYKQFLEMLKEEDPAQLAGSKAVQEIEP--LMLK 238
Query: 182 FTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +L G + +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++
Sbjct: 239 YCRKLEFGDDSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREV 298
Query: 241 I 241
+
Sbjct: 299 V 299
>gi|451996589|gb|EMD89055.1| hypothetical protein COCHEDRAFT_1180203 [Cochliobolus
heterostrophus C5]
Length = 648
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 19/241 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ---SEYGASRERL--ME 72
D + C CGKV ++ +E TF + + G + + G F+ Q + G + L ME
Sbjct: 61 DGTVMCYNCGKVHDESQIVSEVTFGETSGGAAIVEGGFIHANQRHANSMGGTMRGLGGME 120
Query: 73 KAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
KNA+ ++ + + ++ A +Y +A+ F +GRR V A +Y+A
Sbjct: 121 SREHAAMNGKNAIQALGASLNQREAVIEQAFSWYKLAMNHRFIQGRRMRNVAAVAIYMAA 180
Query: 128 R-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE-----SNVLKQVDPSIFLHK 181
R Q +LID + + NV+ LG Y Q ++L D S +++++P + K
Sbjct: 181 RRQPENTLMLIDLAEKIQTNVWALGDTYKQFLEMLKEEDPAQLVGSKAVQEIEP--LMLK 238
Query: 182 FTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +L G + +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++
Sbjct: 239 YCRKLEFGDDSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREV 298
Query: 241 I 241
+
Sbjct: 299 V 299
>gi|402083713|gb|EJT78731.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 724
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 26/244 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ-----------------SEYGA 65
C CG+V +D N E F + + G + + G+++ Q S
Sbjct: 78 CRTCGRVADDTNIVAEIQFGETSQGAAMVQGSYIGPDQGGVRLSGGQGGRRIAGTSTSTE 137
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++E+ + +A + LN+ D ++ A + Y +A +RNFT+GR + V A CLY
Sbjct: 138 AKEKALREAKSLITGFARQLNL--PDRTINSAVQLYKLASSRNFTQGRSMQYVAAMCLYA 195
Query: 126 ACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR+++ +L+D ++ + +V+ LG +Y + + N + D +++F
Sbjct: 196 ACRKEATCKIMLMDLADLVQHDVFHLGRMYKAFIRDIGAGGNYNPIFVED---LIYRFAA 252
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIED 243
RL G KV +TA ++ M RDW+ GR+PSG+CGA L ++A + + + +++
Sbjct: 253 RLEFGDKTNKVANTAVRLVQRMDRDWMVMGRRPSGICGACLIMAARMNNFRRTVREVV-- 310
Query: 244 FMAR 247
F+A+
Sbjct: 311 FIAK 314
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D F+D D EV L ++EE K +W N++++ +Q KE KA L A N
Sbjct: 548 DEFAD--DPEVMYCLLSKEEAELKTQLWVNQNKDWMRKQQEKEF-----KAKLAA---NK 597
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
P+G R ++ R E + S PA +A +AT M+ +++ S +I+
Sbjct: 598 PKG------------------RSRSKKPRIGEGQTS-PADSATDATLEMIDRRQFSKRID 638
Query: 509 YDVLEKLF 516
YD + +
Sbjct: 639 YDAVRSML 646
>gi|270010202|gb|EFA06650.1| hypothetical protein TcasGA2_TC009573 [Tribolium castaneum]
Length = 458
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 175/390 (44%), Gaps = 96/390 (24%)
Query: 168 NVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
++ +VDP +++ +F +L G ++V +TA ++ MKRD I +GR+PSGLCGAAL +
Sbjct: 2 DITLEVDPCLYILRFAAKLEFGSKTQQVANTALRLVQRMKRDSIHSGRRPSGLCGAALLI 61
Query: 227 SALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG 286
+A H S SDI++ ++HE S + + L + DT +
Sbjct: 62 AARLHEFGRSASDIVKIV-----KVHE-------------STLRKRLIEFGDTP---SSA 100
Query: 287 LCRSCYEEFMTISEGLEGGADPPAFQVAER------ERMVKASAEENSSFERE------S 334
L EEFMT+ LE DPP+F+ A + +R+++ AE + ++E
Sbjct: 101 L---TLEEFMTVD--LEEEQDPPSFKAARKKDKERLQRLMEEEAESITELQQEIEMQLNR 155
Query: 335 DSPFMSRVDKVQSPE----------PESIGVPKNCTTQTASNEGE---------GDHTKT 375
D+ SR K + E ++G + A + E G +
Sbjct: 156 DAKMKSRKKKERDTEEIQETNRFIRESTMGTINQIIQEEAIEDPEIAKEPVKELGPDIAS 215
Query: 376 PGVDATTEAS----------DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 425
G+ ++ E + D F DIDD E+D Y+ +E E K IW + N +LE
Sbjct: 216 MGLASSLEDTSNAVQPPQPLDVDMTFDDIDDEELDSYIMSEHESQNKNAIWLKRNAAFLE 275
Query: 426 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 485
EQ K E LQ +E + + EK+++R K G
Sbjct: 276 EQKIK------------------AEKLQKERE----------EGKPEKKKRRNVRRKPIG 307
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKL 515
P +A EA ++L +K++SSKINYDVL+ L
Sbjct: 308 PTNSAGEAIEKILQEKKISSKINYDVLKSL 337
>gi|170043421|ref|XP_001849386.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866782|gb|EDS30165.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 533
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 175/394 (44%), Gaps = 103/394 (26%)
Query: 174 DPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+P I++ ++ ++L +V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H
Sbjct: 56 NPCIYIMRYANKLEFADKTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLIAARMHE 115
Query: 233 LKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 292
S SDI+ R ++HE S + + L + +T + L
Sbjct: 116 FSRSPSDIV-----RIVKIHE-------------STLRKRLVEFGETP---SSALT---L 151
Query: 293 EEFMTISEGLEGGADPPAFQVA---ERERMVKAS----------AEENSSFERESDSPFM 339
+EFM++ LE DPPAF+ A ++ER+ K + AE +++ +RE F
Sbjct: 152 DEFMSVD--LEAEQDPPAFKAARKKDKERLQKLAESPAEFNQLQAEIDAALDREVHKAF- 208
Query: 340 SRVDKVQSPEPESIGVPK----------NCTTQTASNEGEGD-----HTKTPGV------ 378
+R K++ + E V + + + +GEG T G+
Sbjct: 209 ARKRKLKGEDYEDEEVNETDKFIQESTLDVINECLDEDGEGSKASVKRTVPEGMKPDLMA 268
Query: 379 ---DATTE----------ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 425
++T E DG D+DD E+DGY+ EEE YK ++W ++ EYL+
Sbjct: 269 ICANSTEERRENAKAEKLEDDGELALEDLDDEEIDGYIMTEEEARYKDLMWNRLHAEYLK 328
Query: 426 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 485
E KE A K EG ++ A+ G
Sbjct: 329 EMKEKEERLA----------KEREEGKPEKKKRKNVRKKAI------------------G 360
Query: 486 PAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
P+ +A EA +ML +K++SSKINY++L+ L D S
Sbjct: 361 PSNSAGEAIEKMLQEKKISSKINYEILKTLTDSS 394
>gi|340960531|gb|EGS21712.1| transcription factor iiib-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 842
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY---------------GAS 66
C CG V+ + N E TF + A G S + G V Q GAS
Sbjct: 74 ACQNCGYVVYESNIVAEVTFGETANGASVVHGTHVAADQGAIRPSGGGLAFRRVAGAGAS 133
Query: 67 --RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
RER + +A M Q L I + A + Y +A NF +GRR V A CLY
Sbjct: 134 EARERSLREAKQLMTQFAYQLQI--PPHVTEKAFQLYKVAANSNFIQGRRKNTVAAICLY 191
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
CR +++ +LIDF++ + +V+ LG Y +L +L E + ++ IF +F
Sbjct: 192 ATCRKEENNKVMLIDFADIIKTDVFLLGRSYKELLALLPDVKEGSKPVIIEDLIF--RFA 249
Query: 184 DRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + +++
Sbjct: 250 SKLEFLHDTNKVAMSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVV 308
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D F+D D EV +E++ K++IW N++Y+ + K A A+ N
Sbjct: 627 DEFAD--DPEVIYCKLDEKDVMIKEMIWANHNKDYMRKMQQKIFEAKMAQ--------NG 676
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
P K ++ + +K + PA +ALEA + ML + +SSK++
Sbjct: 677 P-----------------PKPKRNRAKKPRIGEGQTAPAGSALEAAQNMLRTRAISSKLD 719
Query: 509 YDVLEKLFDDSVCLYSIS 526
Y + LFD L S S
Sbjct: 720 YSRMGNLFDPKGSLGSKS 737
>gi|378734701|gb|EHY61160.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 977
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 124/258 (48%), Gaps = 40/258 (15%)
Query: 21 LCCDRCGKVL-EDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------------EY 63
L C+ CG V E+ +E F + +G+ G V Q+ E
Sbjct: 79 LICETCGAVAQEESGLVSEQGFGETDSGRITALGVHVGESQTHQRTYAAGGALGNAGREP 138
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
+R+R A M ++ L + ++ V + + +A +F +GR + V CL
Sbjct: 139 TVNRDRSEAHARTVMLSYQSLLGVRLAE--VEAGMQIFKLAWGNSFVQGRTIDSVAVVCL 196
Query: 124 YLACRQK-------SKP---FLLIDFSNYLNINVYELGAVYLQLCQVLYI-------ADE 166
YLACR+K +P +LIDF+ LNI+V+ LG +Y L + LY+ AD
Sbjct: 197 YLACRRKHEQIRNERRPMYSLMLIDFAEKLNIDVFALGKMYSDLVRRLYLQPDGSVQADV 256
Query: 167 SNVLKQVDPSIFLHKFTDRL---LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
S L + P + +++F D L +K D R I+ MKRDW++TGR+PSG+CGAA
Sbjct: 257 SADLLAMGPEVLVNRFVDELEFDREHRDKIKMDAIR-IVQRMKRDWMSTGRRPSGVCGAA 315
Query: 224 LYVSALTHGLKFSKSDII 241
+ ++A + + + +++
Sbjct: 316 VILAARMNNYRRTTREVV 333
>gi|261200727|ref|XP_002626764.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis SLH14081]
gi|239593836|gb|EEQ76417.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis SLH14081]
Length = 777
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 55/224 (24%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D C CG V+ + N +E TF ++A+G + + G FV QS +G
Sbjct: 66 DGMKVCSGCGTVVSEANIVSEITFGESASGAAIVQGTFVGAGQSHGRSFGPGFQRGGGME 125
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 126 SREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 183
Query: 126 AC-RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
AC RQ +LIDF++ L + E G+ +Q
Sbjct: 184 ACRRQDGNTVMLIDFADVL---MLEFGSSMMQ---------------------------- 212
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
V A I+ M RDW+ TGR+P+G+CGAAL ++A
Sbjct: 213 ---------VASEAVRIVQRMNRDWMITGRRPAGICGAALILAA 247
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 393 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 446
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 446 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 502
Query: 447 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 504
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 503 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 561
Query: 505 SKINYDVLEKLFDD 518
KINY +LE++++D
Sbjct: 562 KKINYRLLEEMYED 575
>gi|118401704|ref|XP_001033172.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila]
gi|89287519|gb|EAR85509.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila SB210]
Length = 582
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 123/493 (24%), Positives = 192/493 (38%), Gaps = 119/493 (24%)
Query: 4 CSSCARHVTGHRPYD------SQLCCDRCGKVLEDHNFSTEATFVKNAA-GQSQLSGNFV 56
C C GH YD Q C CG V+ ++ F + F GQ NF
Sbjct: 14 CKKC-----GHVNYDLDGDEADQQKCRNCGFVMYENCFESGIQFTDTKIDGQLHDMSNFG 68
Query: 57 R-----------------TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
R I+SEY ER+ E +R MK A
Sbjct: 69 RDNTKYAEECIATMIRDLKIKSEYPDYLERIGETP---LRIMKFAYK------------- 112
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
A G A+ LY+A R + PFLL+DFS L IN+++L Y +L +
Sbjct: 113 ------AYFLDHGSNIHHYSAAALYIALRFQKAPFLLMDFSEKLCINLFKLARCYRKLAK 166
Query: 160 VLYIADESN-VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKP 216
L + + N L +DPSI++ +F ++L +K +V +TA +L MK DW++ GR+P
Sbjct: 167 FLNVTLKLNERLPSIDPSIYIPRFC-KMLEFNDKVDQVKETAIKLLKRMKLDWMSHGRRP 225
Query: 217 SGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKH 276
S LCGAA+ ++A HG K + S++ + ++ L + + K
Sbjct: 226 SSLCGAAILIAARMHGFKRTTSEVCKVVYVCEETLRKRLEE----------------FKE 269
Query: 277 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA---ERERMVKASAEENSSFERE 333
D K L R ++E I E + DPPAF A ++E + K E + E
Sbjct: 270 TDVAK-----LTREKFDEIQDI-ELMGRERDPPAFIKALKNQQETLKKIKPNEENDDEIN 323
Query: 334 SDSPFMSRVDKVQSPEPESIGVPKNCTTQTASN-------EGEGDHTKTPG--------- 377
+ + + Q + G N + + + E EG+++K
Sbjct: 324 KQLEDAANIIETQVKSTSNEGQQVNQDYEMSDDISIGDDEEDEGENSKQQNGEEQKKQLK 383
Query: 378 --------VDATTEASDGS---------------DNFSDIDDFEVDGYLHNEEEKHYKKI 414
V + D ++ SD+ + +V+ ++ EE K I
Sbjct: 384 PLSESERQVKTLVKKEDAKQIGIINENGYSLNVREDLSDMSEEDVNQFILTNEEHTVKSI 443
Query: 415 IWEEMNREYLEEQ 427
IW MN +L EQ
Sbjct: 444 IWHSMNETWLREQ 456
>gi|85082526|ref|XP_956934.1| hypothetical protein NCU04523 [Neurospora crassa OR74A]
gi|28918015|gb|EAA27698.1| predicted protein [Neurospora crassa OR74A]
Length = 878
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY--------------GAS- 66
C CG V +D N +E TF ++++G + + G V Q GAS
Sbjct: 72 TCQTCGMVADDSNIVSEITFGESSSGAAVVHGTHVAFDQGGIRGVGGLAFRRVAGGGASE 131
Query: 67 -RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
RER + + M+Q L IG+S I +A R+Y NF +GRR + V A CLY
Sbjct: 132 ARERSLREVKALMQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNVAAICLYA 189
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHK 181
ACR + + +LID ++ L+ +V+ LG Y L P + +++
Sbjct: 190 ACRAENNHKIMLIDLADLLHTDVFALGRGYKDFLNRF-----PEFLTGPRPIVIEDLIYR 244
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++
Sbjct: 245 FASKLEFLHDTNKVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREV 304
Query: 241 I 241
+
Sbjct: 305 V 305
>gi|336471108|gb|EGO59269.1| hypothetical protein NEUTE1DRAFT_145317 [Neurospora tetrasperma
FGSC 2508]
gi|350292195|gb|EGZ73390.1| hypothetical protein NEUTE2DRAFT_149471 [Neurospora tetrasperma
FGSC 2509]
Length = 878
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 28/241 (11%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGN----------------FVRTIQSEYGA 65
C CG V +D N +E TF ++++G + + G F R
Sbjct: 72 TCQTCGMVADDSNIVSEITFGESSSGAAVVHGTHVAFDQGGIRGVGGLAFRRVAGGGASE 131
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
+RER + + M+Q L IG+S I +A R+Y NF +GRR + V A CLY
Sbjct: 132 ARERSLREVKALMQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNVAAICLYA 189
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHK 181
ACR + + +LID ++ L+ +V+ LG Y L P + +++
Sbjct: 190 ACRAENNHKIMLIDLADLLHTDVFALGRGYKDFLNRF-----PEFLTGPRPIVIEDLIYR 244
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++
Sbjct: 245 FASKLEFLHDTNKVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREV 304
Query: 241 I 241
+
Sbjct: 305 V 305
>gi|367044868|ref|XP_003652814.1| hypothetical protein THITE_2114603 [Thielavia terrestris NRRL 8126]
gi|347000076|gb|AEO66478.1| hypothetical protein THITE_2114603 [Thielavia terrestris NRRL 8126]
Length = 845
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 29/242 (11%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----------------RTIQSEYGA 65
C CG+V+ + N E TF + A+G + + G+++ R + G+
Sbjct: 80 VCQNCGRVMYESNIVAEITFGETASGAAVVHGSYLAADQGSIRPTASGPAFRRVPGAGGS 139
Query: 66 -SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+RER + +A M Q + L I +V A R Y A NF +GRR V A CLY
Sbjct: 140 EARERSLREAKQIMNQFAHQLRI--PLHLVDKAHRLYRAASTSNFIQGRRKHTVAAVCLY 197
Query: 125 LACRQKS-KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLH 180
CR++ +LID ++ + +V+ LG Y L + N+ + P I +
Sbjct: 198 AICRKEDHNKVMLIDLADIIKTDVFLLGKSYKDL-----LNSHPNLKEGTKPIIIEDLIF 252
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + +
Sbjct: 253 RFASKLEFLHDTNKVALSAVRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVRE 312
Query: 240 II 241
++
Sbjct: 313 VV 314
>gi|367033853|ref|XP_003666209.1| hypothetical protein MYCTH_2310743 [Myceliophthora thermophila ATCC
42464]
gi|347013481|gb|AEO60964.1| hypothetical protein MYCTH_2310743 [Myceliophthora thermophila ATCC
42464]
Length = 852
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 29/242 (11%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY---------------GAS 66
C CG+V+ + N E TF ++A G + + G+++ Q GAS
Sbjct: 74 ACQNCGRVVWESNIVAEVTFGESANGAAVVHGSYLAADQGSVRPTAPGLAFRRVAGAGAS 133
Query: 67 --RERLMEKAFDDMRQMKNALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQVQAS 121
RER + +A M Q + L I HVA++ Y A NF +GRR V A
Sbjct: 134 EARERSLREARQLMNQFAHQLQIAP-----HVAEKAFQVYKFASNSNFIQGRRKNTVAAV 188
Query: 122 CLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
C+Y CR++ + +LID ++ + +V+ LG Y L L D + K + +
Sbjct: 189 CIYAVCRKEDNNKVMLIDLADIIKTDVFLLGRSYKDLLNAL--PDMKDGTKPIIIEDLIF 246
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + +
Sbjct: 247 RFASKLEFLHDTNKVALSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVRE 306
Query: 240 II 241
++
Sbjct: 307 VV 308
>gi|413946298|gb|AFW78947.1| hypothetical protein ZEAMMB73_193949 [Zea mays]
Length = 216
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 78/136 (57%), Gaps = 36/136 (26%)
Query: 212 TGRKPSGLCGAALYVSALTHGLKFSKSDI---------------------------IEDF 244
T RKPSGLCGAALY++AL+HG ++K+DI IE+F
Sbjct: 4 TRRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEF 63
Query: 245 MARKKELHE-GVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEGL 302
+A E +E V+ + P +G E++CKHKD G + FA GLC CY +F +S GL
Sbjct: 64 LATADESNEEPVSKHSPKSG-------EIICKHKDKGFEHFAHGLCEKCYNKFTKLSGGL 116
Query: 303 EGGADPPAFQVAERER 318
EGG+ PPAFQ AE++R
Sbjct: 117 EGGSVPPAFQRAEKKR 132
>gi|330927787|ref|XP_003301998.1| hypothetical protein PTT_13669 [Pyrenophora teres f. teres 0-1]
gi|311322865|gb|EFQ89897.1| hypothetical protein PTT_13669 [Pyrenophora teres f. teres 0-1]
Length = 729
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 119/241 (49%), Gaps = 19/241 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ---SEYGASRERL--ME 72
D+ + C CG V E+ + +E TF + A G + + G + Q + G + L ME
Sbjct: 60 DNNILCYTCGFVHEEVHIVSEVTFAEGANGAATVQGGTIHQDQRHANSMGGTMRGLGGME 119
Query: 73 KAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
KNA+ ++ + + ++ A +Y +++ NF +GRR V A +Y+A
Sbjct: 120 SREQAALNGKNAIQALGASLNQREAVIEQAFSWYKLSMNFNFIQGRRMRNVAAISIYMAA 179
Query: 128 R-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLHK 181
R Q +LID + + NV+ LG Y + + D + ++ ++++P + K
Sbjct: 180 RRQPENTLMLIDLAEKIQTNVWVLGDTYKSFLKTMKERDPAQLVGNKAVQEIEP--LMLK 237
Query: 182 FTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +L G + +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++
Sbjct: 238 YCRKLEFGDDSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREV 297
Query: 241 I 241
+
Sbjct: 298 V 298
>gi|145544220|ref|XP_001457795.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425613|emb|CAK90398.1| unnamed protein product [Paramecium tetraurelia]
Length = 439
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 148/357 (41%), Gaps = 63/357 (17%)
Query: 89 ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN-V 147
E E +A+R + N R + + LY R K+ P+LLI+ S ++ +
Sbjct: 50 EYKEAFEIARRLLKFYKSENAI--RNGQYFAGAALYFGFRCKNAPYLLIEISEFIKKDSA 107
Query: 148 YELGAVYLQLCQVL-------YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK---VCDT 197
++ YL+L + + I + L+ +DPSI++ KF RLL K + DT
Sbjct: 108 TKVAKCYLKLLKFVKADAKAPQIVQLAKSLQYLDPSIYIPKFV-RLLEISRDKYKAIVDT 166
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-----DFMARKKELH 252
A ++ M DW+ GR+PS LCGAAL +SA HG S + + D RK+
Sbjct: 167 AMKLIKRMMLDWMAYGRRPSSLCGAALLISARFHGENVPTSQVCKTVQVCDETIRKR--- 223
Query: 253 EGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA-DPPAF 311
L + TG L R +E+ I G+ G DPP++
Sbjct: 224 --------------------LAEFNQTG---LSQLTREQFEQIENIETGIPGPVNDPPSY 260
Query: 312 Q--VAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGE 369
+ + E M K EE ES + ++ +PE N +
Sbjct: 261 RRIKQQEEEMRKGLTEEQIKQLEESTLKKALEMIELLKVQPEVFKQEDNLKQEYP----- 315
Query: 370 GDHTKTPGVDATTEASDGS--DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYL 424
P + E D + S+ID+ E Y+ NE+EK K+I+W +N+EY+
Sbjct: 316 -----IPVKEPIKEQKDNEILSSLSEIDEQE---YILNEQEKANKQIVWSALNKEYI 364
>gi|116195418|ref|XP_001223521.1| hypothetical protein CHGG_04307 [Chaetomium globosum CBS 148.51]
gi|88180220|gb|EAQ87688.1| hypothetical protein CHGG_04307 [Chaetomium globosum CBS 148.51]
Length = 775
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY---------------GAS 66
C CG+V+ + N E TF ++A G + + G+++ Q GAS
Sbjct: 72 ACQNCGRVVWESNIVAEVTFGESANGAAVVHGSYLAADQGGIRPTAGGLAFRRVAGAGAS 131
Query: 67 --RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
RER + +A M Q + L I + + A + Y A NF +GRR V A C+Y
Sbjct: 132 EARERSLREAKQLMNQFAHQLQI--APLVAEKAFQVYKFASNSNFIQGRRKNTVAAVCVY 189
Query: 125 LACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
CR++ + +LID ++ + +V+ LG Y L L D + K + + +F
Sbjct: 190 AVCRKEDNNKVMLIDLADIIKTDVFLLGRSYKDLLAAL--PDMKDGTKPIIIEDLIFRFA 247
Query: 184 DRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + +++
Sbjct: 248 TKLEFLHDTNKVALSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVV 306
>gi|189204338|ref|XP_001938504.1| transcription factor tfiiib complex subunit brf1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985603|gb|EDU51091.1| transcription factor tfiiib complex subunit brf1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 720
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 118/243 (48%), Gaps = 23/243 (9%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA------------ 65
++ + C CG V E+ + +E TF + + G + + G + Q +
Sbjct: 57 ENTILCYTCGAVHENVDIVSEVTFAEGSNGAATVQGGTIHQDQRHANSMGGTMRGLGGMG 116
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE+ + + + +LN + + ++ A +Y +++ NF +GRR V A +Y+
Sbjct: 117 SREQAALNGKNAIEALGASLN--QREAVIEQAVSWYKLSMNFNFVQGRRMRNVAAISIYM 174
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFL 179
A R Q +LID + + NV+ LG Y + + D + ++ ++++P +
Sbjct: 175 AARRQPENTLMLIDLAEKIQTNVWVLGDTYKSFLKTMKEKDPAQLIGNKAVQEIEP--LM 232
Query: 180 HKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
K+ +L G + +V D A +L M RDW+ GR+P+GLCGA + ++A + + +
Sbjct: 233 LKYCRKLEFGDDSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIR 292
Query: 239 DII 241
+++
Sbjct: 293 EVV 295
>gi|346973176|gb|EGY16628.1| transcription factor tfiiib complex subunit brf1 [Verticillium
dahliae VdLs.17]
Length = 735
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 128/279 (45%), Gaps = 33/279 (11%)
Query: 9 RHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQS 61
+H T + D C CG++ E+ N E F + ++G + + G+++ RT
Sbjct: 63 KHCTNPKVVDG--ICHGCGRIAEESNIVAEVQFGETSSGAAMVQGSYISADQGGARTFGP 120
Query: 62 EYGASRERLMEKAFDDMRQMKNA----LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ +K D + + + L IV A + +A+ + FT+GR +
Sbjct: 121 GGRGAGSSQRDKTIIDAKNLIHGYVWRLAGNPRPHIVDKAVATFKLAMGQGFTQGRTLQM 180
Query: 118 VQASCLYLACR---------QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
V A+C+Y A R ++++ +++D ++ +NV+ LG + L + I +
Sbjct: 181 VCAACIYYAFRSQERVEGNERETQFVMMLDLADLTRLNVFRLGRCFKALVNKVPIG---S 237
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
+ + P +H+ +L G KV + A ++ SM+RDWI GR+PSG+CGA L ++
Sbjct: 238 LACTIFPEDIIHRLATKLDFGPQTDKVAEDAVRLITSMRRDWIIMGRRPSGICGACLLMA 297
Query: 228 ALTHGLKFSKSDII-------EDFMARKKELHEGVAANL 259
A + + + +++ R KE +E A+ L
Sbjct: 298 ARMNNFRRTMREVVYIVKVTSHTIQERMKEFNETAASQL 336
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 395 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 454
DD EV L + EE K+I+W N+++L + +E LEA P
Sbjct: 553 DDVEVMNALLSPEEVKLKEIVWVNENQDWLRKNQQREF-----DRKLEAGKPKRP----- 602
Query: 455 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 514
+++ + R EA+ S PA T +EA + ++ +S ++NYD +
Sbjct: 603 ----------------RKRNKPRLGEAQTS-PASTPIEAAQNVMKHHGMSKRLNYDAISS 645
Query: 515 LFD 517
L +
Sbjct: 646 LLN 648
>gi|396490241|ref|XP_003843289.1| hypothetical protein LEMA_P073990.1 [Leptosphaeria maculans JN3]
gi|312219868|emb|CBX99810.1| hypothetical protein LEMA_P073990.1 [Leptosphaeria maculans JN3]
Length = 713
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 23/236 (9%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTIQSEYGA-------- 65
D C CG VL++ + E TF + A G + + G F+ R S G
Sbjct: 62 DGSTFCFTCGTVLQESSIVAEVTFGETAGGAAIVEGGFIGDQQRHANSMGGTMRGLGGME 121
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE+ + A + + +L + ++ A +Y +A+ NF +GRR V A +Y+
Sbjct: 122 SREQAVMLARTAIDSLGRSLQ--QRQTVIDQAVGWYKLAMNHNFIQGRRIRNVAAVAIYM 179
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-----LKQVDPSIFL 179
A R Q LL+D + NV+ LG Y + L D + + +++++P +
Sbjct: 180 AARRQPENTLLLMDLAEKTQTNVWALGDTYKAFLKKLGEDDPATLSGNKAVQEIEP--LM 237
Query: 180 HKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
K+ +L + KV D A +L M RDW+ GR+P+GLCGA + ++A + +
Sbjct: 238 LKYCRKLEFAEASHKVADDACKLLRRMGRDWMVQGRQPAGLCGACIILAARMNNFR 293
>gi|302423884|ref|XP_003009772.1| transcription factor tfiiib complex subunit brf1 [Verticillium
albo-atrum VaMs.102]
gi|261352918|gb|EEY15346.1| transcription factor tfiiib complex subunit brf1 [Verticillium
albo-atrum VaMs.102]
Length = 681
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 120/265 (45%), Gaps = 31/265 (11%)
Query: 3 WCSSCA-----RHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV- 56
WC +H T + D C CG++ E+ N E F + ++G + + G+++
Sbjct: 15 WCPRAGPKCPNKHCTNPKVVDG--ICHGCGRIAEESNIVAEVQFGETSSGAAMVQGSYIS 72
Query: 57 ------RTIQSEYGASRERLMEKAFDDMRQMKNA----LNIGESDEIVHVAKRFYGIAVA 106
RT + +K D + + + L IV A + +A+
Sbjct: 73 ADQGGARTFGPGGRGAGSSQRDKTIIDAKNLIHGYVWRLAGNPRPHIVDKAVATFKLAMG 132
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKP---------FLLIDFSNYLNINVYELGAVYLQL 157
+ FT+GR + V A+C+Y A R + + +++D ++ +NV+ LG + L
Sbjct: 133 QGFTQGRTLQMVCAACIYYAFRSQERVEGNERETQFVMMLDLADLTRLNVFRLGRCFKAL 192
Query: 158 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKP 216
+ I ++ + P +H+ +L G KV + A ++ SM+RDWI GR+P
Sbjct: 193 VNKVPIG---SLACTIFPEDIIHRLATKLDFGPQTDKVAEDAVRLITSMRRDWIIMGRRP 249
Query: 217 SGLCGAALYVSALTHGLKFSKSDII 241
SG+CGA L ++A + + + +++
Sbjct: 250 SGICGACLLMAARMNNFRRTMREVV 274
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 29/129 (22%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
D F+D D EV L + EE K+I+W N+++L + +E LEA
Sbjct: 495 DEFAD--DVEVMNALLSPEEVKLKEIVWVNENQDWLRKNQQREF-----DRKLEAGKPKR 547
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
P +++ + R EA+ S PA T +EA + ++ +S ++N
Sbjct: 548 P---------------------RKRNKPRLGEAQTS-PASTPIEAAQNVMKHHGMSKRLN 585
Query: 509 YDVLEKLFD 517
YD + L +
Sbjct: 586 YDAISSLLN 594
>gi|429966286|gb|ELA48283.1| hypothetical protein VCUG_00324, partial [Vavraia culicis
'floridensis']
Length = 165
Score = 93.6 bits (231), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C + S +CC +CG + E+ ++ F +N G SQL+G FVR +
Sbjct: 6 CKACGSTDIDNGYSTSSICCRKCGTLNEELFITSSLNFTENN-GASQLNGQFVRMTDTYA 64
Query: 62 EYGASRERLMEKAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
+ G + R + + Q+KN ++G SDE+ A R+Y +++ N T+GR +
Sbjct: 65 KVGGNIIRTTNQQIQN--QIKNICASLGLSDEVAQSAHRWYKLSLQGNLTRGRNILYTLS 122
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
+C+Y+ CRQ+ P LLIDF++ L+++V+++G +++++ L +
Sbjct: 123 ACIYIVCRQEKTPHLLIDFAHLLDLDVFKIGNIFVRIVVFLNV 165
>gi|449449894|ref|XP_004142699.1| PREDICTED: uncharacterized protein LOC101217202 [Cucumis sativus]
Length = 236
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 26/131 (19%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
++ D+ D EV+ YL+N +E HYKKIIWE++N++YL++QAAK+
Sbjct: 27 EDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKK----------------- 69
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 508
Q L A+AV K K++Q R EA + PAQ TR M KKRLSSK N
Sbjct: 70 -------QGLNVVGASAVVKKSKKRQ--RKTEAPINMPAQADTGTTREMQIKKRLSSKFN 120
Query: 509 YDVLEKLFDDS 519
+DVL+KLF D+
Sbjct: 121 FDVLDKLFSDT 131
>gi|242018719|ref|XP_002429821.1| transcription factor IIIB 70 kDa subunit, putative [Pediculus
humanus corporis]
gi|212514839|gb|EEB17083.1| transcription factor IIIB 70 kDa subunit, putative [Pediculus
humanus corporis]
Length = 485
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 172/382 (45%), Gaps = 64/382 (16%)
Query: 171 KQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
++ D S+++ +F +RL GNK +V TA ++ MKRD + TGR+PSGLCGAAL ++A
Sbjct: 9 RKEDVSLYILRFANRL-EFGNKTHQVSMTALRLVQRMKRDSMHTGRRPSGLCGAALLMAA 67
Query: 229 LTHGLKFSKSDIIEDFMARKKELHEGVA--ANLPNNGPKVSGMNEVLCKHKDTGKPFACG 286
H S SDII+ + L + + P++ + V + + F
Sbjct: 68 RLHEFNRSVSDIIKIVKVHESTLRKRLLEFGETPSSSLSLDEFMTVDLEEEQDPPSFKAA 127
Query: 287 LCRSCYEEFMTISEGLEGGADPPAFQVA-ERE----------RMVKASAEENSSFERESD 335
+ ++ F I EG E G + A Q E+E VK+S+ S E ES+
Sbjct: 128 RKKDQHDRFQKIIEGDEMGQNLTALQREIEKELNELSSKRKANHVKSSSVPISGNEEESE 187
Query: 336 SPFMSR-VDK--VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDA------------ 380
+ ++ V K +++ E E I P T N+G T G+ +
Sbjct: 188 NQALNNFVQKFTIEAIE-ECINKPGEEETGNVENQGLPPSFTTLGLSSNISTTTTTTTTT 246
Query: 381 ------TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
+ DG D+DD E++ Y+ + E +K +W ++N +YL+ Q +E
Sbjct: 247 PTQEQTSLNVPDGELVADDLDDDELNQYIMTDREAKFKDSLWMKVNEDYLQRQKEREEKL 306
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
A K C K K++++ + ++KN+ A +A EA
Sbjct: 307 AKEKE--------C------------------GKPEKKRKKYSSKKSKNAPAANSAGEAF 340
Query: 495 RRMLTKKRLSSKINYDVLEKLF 516
+ML +K++S+KINYDVL+ L
Sbjct: 341 EKMLQEKKMSTKINYDVLKSLM 362
>gi|170043428|ref|XP_001849389.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866785|gb|EDS30168.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 218
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------------SRER 69
C CG VLED+ +E F +NA G S G FV + S+ GA SRE
Sbjct: 26 CTNCGSVLEDNIIVSEVQFEENAHGASSAVGQFVAS-DSKGGATAYGKFHVGTGTESREV 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ KA + + + L++ ++ + + F+ +A+ R+ T+GRR + A+C+Y+ CR
Sbjct: 85 TLRKARHGITHLCHQLHL--NNHCIETSCNFFKMALIRHLTRGRRNTHIYAACVYITCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
+ LLID S+ L I YELG YL+L Q L I
Sbjct: 143 EGTSHLLIDISDVLQICCYELGRTYLKLSQALCI 176
>gi|186479065|ref|NP_001117389.1| transcription regulator / translation initiation factor /zinc ion
binding / transcription activator [Arabidopsis thaliana]
gi|332193099|gb|AEE31220.1| transcription regulator / translation initiation factor /zinc ion
binding / transcription activator [Arabidopsis thaliana]
Length = 254
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 219 LCGAALYVSALTHG 232
+CGAALY +AL+HG
Sbjct: 61 ICGAALYTAALSHG 74
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 95/218 (43%), Gaps = 72/218 (33%)
Query: 304 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQ 362
GG+DPP+FQ AE+ERM KAS EEN DK Q+
Sbjct: 74 GGSDPPSFQRAEKERMEEKASTEEN---------------DKQQN--------------- 103
Query: 363 TASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNRE 422
SD S SD+DD E+D Y N +E H +II++ N
Sbjct: 104 ----------------------SDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENPG 141
Query: 423 YLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAK 482
Y E++AA A A EAS AA AKSRK+K+Q+RA E K
Sbjct: 142 YDEKEAAALNACNNASNLFEAS------------------KAAAAKSRKDKRQQRAEEEK 183
Query: 483 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 520
N+ P TA+EA M+ +K+ N D LE+L D S
Sbjct: 184 NAPPPATAMEAVDSMVKRKKFPD-TNCDYLEELLDTSA 220
>gi|171691422|ref|XP_001910636.1| hypothetical protein [Podospora anserina S mat+]
gi|170945659|emb|CAP71772.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 21/238 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----------------RTIQSEYG 64
C CG VL +H+ E TF + + G + + G+++ R +
Sbjct: 63 ACADCGLVLREHDIVAEITFGETSNGAATVQGSYLGANQGGVRPTGMGLSFRRVPGAGLK 122
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+RER + D QM + L++ ++ A Y AV ++ KGRR V A C+Y
Sbjct: 123 EARERAERETRDLCSQMVHQLSV--PLDVADTAMDIYREAVRASYVKGRRKHNVAAVCMY 180
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
ACR K +L+D ++ + +V+ LG Y +L + L D ++ IF
Sbjct: 181 AACRLANQKQIMLLDLADIVKTDVFLLGRNYKELMRRLPTFDTGYDPLTLENLIFRFAAK 240
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
L NK V ++A I M +D I+ GR+P+G+ GAA+ ++A H + + +++
Sbjct: 241 LEFLHDTNK-VANSALRIAHRMVKDNISIGRRPAGISGAAIIMAARAHNFRRTVREVV 297
>gi|291236296|ref|XP_002738076.1| PREDICTED: transcription initiation factor IIIB-like [Saccoglossus
kowalevskii]
Length = 205
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY--GASRERLMEK 73
C CG VLED+ +E F +N+ G + + G +V ++ S + G +E
Sbjct: 25 CVACGSVLEDNIIVSEVNFAENSLGGTSVIGQYVSAEGGKSHSLGSSFHHGFGKESRAVT 84
Query: 74 AFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ R++++ + + + A F+ +AV++ T+GR+T V ++CLYL CR +
Sbjct: 85 LLNGKRKIQSLGAQLKLNQHCIDTAYNFFKMAVSKRLTRGRKTSHVVSACLYLVCRTEGT 144
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
P +L+DFS+ L +NVY LG YL+L L+I
Sbjct: 145 PHMLLDFSDILQVNVYVLGKTYLKLSTELHI 175
>gi|357622230|gb|EHJ73794.1| TFIIB-related factor [Danaus plexippus]
Length = 195
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C C P C CG VLED+ E F +NA G + G FV
Sbjct: 6 CKHCGSSEIEVDPARGDAVCTNCGSVLEDNIIVAEVEFQENAHGGASAIGQFVSADSKGG 65
Query: 57 -----RTIQSEYGA-SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
R + G SRE + KA + + + L + + + + +A F+ +A+AR+ T
Sbjct: 66 ASGFGRAFNAGIGQESREITLRKAREGITALCQQLRLNQ--QCIDIACNFFKMALARHLT 123
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
GR++ QA+C+Y+ CR + P LLID S+ L I+ Y+LG Y +L + L I
Sbjct: 124 IGRQSALTQAACVYITCRTEGTPHLLIDISDALQIDCYQLGRTYFKLSKALCI 176
>gi|145536716|ref|XP_001454080.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421824|emb|CAK86683.1| unnamed protein product [Paramecium tetraurelia]
Length = 438
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 158/370 (42%), Gaps = 66/370 (17%)
Query: 78 MRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
++Q+ L + E E +A+R + N K + + LY R K+ P+LL
Sbjct: 38 LKQLDLELAVDEEYKEAFEIARRLLKFYKSENSIKN--GQYFAGAALYFGFRCKNAPYLL 95
Query: 137 IDFSNYLNI-NVYELGAVYLQLCQ-------VLYIADESNVLKQVDPSIFLHKFTDRLLP 188
I+ S + + ++ YL+L + V I + L+ +DPSI++ KF RLL
Sbjct: 96 IEISELIKKESATKVAKCYLKLLKFVKLDAKVPQIVQLAKSLQYIDPSIYIPKFV-RLLE 154
Query: 189 ---GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE--- 242
+K++ +TA ++ M DW+ GR+PS LCGAAL +SA HG S S + +
Sbjct: 155 ISRDKHKQIVETAMKLIKRMMLDWMAYGRRPSSLCGAALLISARFHGENVSTSQVCKTVQ 214
Query: 243 --DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISE 300
D RK+ L + TG L R +E+ I
Sbjct: 215 VCDETIRKR-----------------------LAEFNQTG---LSQLTREQFEQIENIET 248
Query: 301 GLEGGA-DPPAFQ--VAERERMVKASAE-ENSSFERESDSPFMSRVD--KVQSPEPESIG 354
G+ G DPP+++ + E M K E E S E + + ++ KVQ PE
Sbjct: 249 GIPGPVNDPPSYRRIKQQEEEMRKGLTEDEIKSLEESTLKKALEMIELLKVQ---PEVFK 305
Query: 355 VPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKI 414
N + ++ E E D + S + + + Y+ +E+EK K++
Sbjct: 306 QETNLKQEDPASFSE----------VVKEQKD-CEVLSSLSESDEQEYILSEQEKACKQL 354
Query: 415 IWEEMNREYL 424
+W+ M +EY+
Sbjct: 355 VWQTMYKEYI 364
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 128/300 (42%), Gaps = 49/300 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKV---------------------------------L 30
C +C + PY ++ C CG++ L
Sbjct: 11 CPNCGSTNLVYDPYRGEIYCQNCGEIIQENIIDLRPDYRIFDSNQWKKRSRIGAPESILL 70
Query: 31 EDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALNIG 88
D ST+ ++ G + +R QS S ER + A ++ ++ L +
Sbjct: 71 HDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLP 130
Query: 89 ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
+ E A R Y AV R +GR E V A+C+Y ACR P L + S+ ++
Sbjct: 131 KHVE--EEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKK 188
Query: 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD 208
E+G Y + + L + + +K P+ +++KF D L G ++KV A +IL R
Sbjct: 189 EIGRSYRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRKAVEILEEAYRK 243
Query: 209 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANLPN 261
+T+G+ P+GL AALY+++L G K ++ ++ E R KEL E + LP+
Sbjct: 244 GLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEIARVTEVTVRNRYKELVEKLGLKLPS 303
>gi|71667191|ref|XP_820547.1| transcription factor [Trypanosoma cruzi strain CL Brener]
gi|70885896|gb|EAN98696.1| transcription factor, putative [Trypanosoma cruzi]
Length = 602
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVK----NAAGQSQLSGNF--VRTIQSEYGASRERLMEKA 74
+ C CG +++D + F + NA L G+F R + S E A
Sbjct: 20 VTCTLCGDIVQDQQLELDPVFARGEKANARSLRSL-GHFRPTRGVIGTRMPSARPSTEAA 78
Query: 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 134
M + L+I SD++V +A Y +AV N G R + ++ LY CR++
Sbjct: 79 RRGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-SILSAVLYAVCRRERTSH 135
Query: 135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GN 191
++ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G G
Sbjct: 136 MIYDFSDVTGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGPMTGP 190
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
VC A +L +M+ DWI GR+P G+C AA+ V+ + S ++
Sbjct: 191 VVVC--ALKVLRAMRDDWIACGRRPMGVCVAAILVACYMFNIPRSPDEV 237
>gi|297828227|ref|XP_002881996.1| hypothetical protein ARALYDRAFT_346315 [Arabidopsis lyrata subsp.
lyrata]
gi|297327835|gb|EFH58255.1| hypothetical protein ARALYDRAFT_346315 [Arabidopsis lyrata subsp.
lyrata]
Length = 475
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 117/241 (48%), Gaps = 72/241 (29%)
Query: 272 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV-KASAEENSSF 330
VLC H+D KP GLC+SCY+EFM +S GLEGG+DPPAFQ AE+ERM KAS EEN
Sbjct: 230 VLCMHQDC-KPVDYGLCKSCYDEFMKVSGGLEGGSDPPAFQRAEKERMEEKASREEND-- 286
Query: 331 ERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDN 390
+ +++G D + T
Sbjct: 287 -------------------------------KQLNSDGHSDESST--------------- 300
Query: 391 FSDIDDFE--------VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 442
SD+DD E +D Y N EE +I+++ N EY E++AAKEAAA A
Sbjct: 301 LSDVDDRESDRFTVSQLDCYFRNPEEVRQVEIVFDLTNPEYNEKEAAKEAAALNASNNAS 360
Query: 443 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 502
+ A+ AA AKSRKEK+Q+RA E KN+ P TA+EA RM+ +K+
Sbjct: 361 NLF--------------EASKAAAAKSRKEKRQQRAEEEKNAPPPATAMEAVGRMVKRKK 406
Query: 503 L 503
Sbjct: 407 F 407
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 473 KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 519
K+Q+RA E KN+ P TA+EA M+ +K+ +IN D LE+L D S
Sbjct: 44 KRQQRAEEEKNAPPPATAIEAVDSMVKRKKF-RRINCDYLEELLDAS 89
>gi|388496366|gb|AFK36249.1| unknown [Lotus japonicus]
Length = 121
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 16/131 (12%)
Query: 1 MVWCSSCARHVTGHRPYDSQ-LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C +C ++V G R D LCCD CGKVLE++ FS E K + GQS+LSG +VRTI
Sbjct: 1 MVFCDNCVKNVAGVRINDGLILCCDECGKVLENNYFSEE----KISTGQSELSGRYVRTI 56
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
QSEY ASR+R +++ +D+++ + + D + + A FY K RR E+ +
Sbjct: 57 QSEYSASRQRTLDRDYDEIKYLS-----LDDDNLANQALAFY------RQIKQRRAEEAK 105
Query: 120 ASCLYLACRQK 130
+ + L Q+
Sbjct: 106 KTWVLLNLLQR 116
>gi|407847988|gb|EKG03518.1| hypothetical protein TCSYLVIO_005435 [Trypanosoma cruzi]
Length = 602
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVK----NAAGQSQLSGNF--VRTIQSEYGASRERLMEKA 74
+ C CG +++D + F + NA L G+F R + S E A
Sbjct: 20 VTCTLCGDIVQDQQLELDPVFARGEKANARSLRSL-GHFRPTRGVIGTRMPSARPSTEAA 78
Query: 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 134
M + L+I SD++V +A Y +AV N G R + ++ LY CR++
Sbjct: 79 RRGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-AILSAVLYAVCRRERTSH 135
Query: 135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GN 191
++ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G G
Sbjct: 136 MIYDFSDVAGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGPMTGP 190
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
VC A +L +M+ DWI GR+P G+C AA+ V+ + S ++
Sbjct: 191 VVVC--ALKVLRAMRDDWIACGRRPMGVCVAAILVACYMFNIPRSPDEV 237
>gi|170583367|ref|XP_001896547.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
gi|158596222|gb|EDP34611.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
Length = 769
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 18/182 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ F +NA G L G F+ + + + SRE
Sbjct: 24 CMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQPTNLSGVPGLSHQESREITY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + ++ + L I + V+ A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 YKGRKLIEEIASQLRINQ--HCVNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDITQVNVFDLGRTLNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGAK 196
Query: 192 KK 193
+K
Sbjct: 197 QK 198
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 385 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 444
S+G + IDD E++ Y+ +EE K W ++N E+L+E + +
Sbjct: 330 SNGELDLEGIDDDEINTYILTKEEVDLKTRFWMKLNGEHLKEMERRRREREEEER----- 384
Query: 445 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGP--AQTALEATRRMLTKKR 502
K K+++R + P A TA EA +++ +K+
Sbjct: 385 ----------------------EKDNSSKKRRRTNGIRKKEPIVAATAQEAMEKVIHEKK 422
Query: 503 LSSKINYDVLEKLFD 517
LS+KINYD+L+++ D
Sbjct: 423 LSNKINYDILKEIED 437
>gi|342185178|emb|CCC94661.1| putative transcription factor [Trypanosoma congolense IL3000]
Length = 612
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 23/243 (9%)
Query: 9 RHVTGHRPYD---SQLCCDRCGKVLEDHNFSTEATFVK-NAAGQSQLSGNFVRTIQSEYG 64
RH T + D + C CG V+ D F + F + + A + + G+ ++ G
Sbjct: 5 RHPTSAQYTDRGSGTVTCTLCGDVMSDPQFELDPVFSRGDKASRLRALGH----LRPALG 60
Query: 65 ASRERL------MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+ RL +E A M + L++G D++V A Y +AV N G R V
Sbjct: 61 SVAPRLPSARPSVEAARRGMATIARQLDVG--DDMVESALGLYKLAVNLNAVTGARP-VV 117
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
++ LY+ CR++ ++ DF++ + + YE+ A +C+ + DPS
Sbjct: 118 LSAVLYVMCRRERTSHMVFDFADAIGESPYEILAYMHHICEA-----TRTTIPVADPSCL 172
Query: 179 LHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+H+F +++ L + V A +L +M DWI GR+P G+C AAL V+ + S
Sbjct: 173 VHRFAEQMNLGNMTRPVIICALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSP 232
Query: 238 SDI 240
++
Sbjct: 233 DEV 235
>gi|413952557|gb|AFW85206.1| hypothetical protein ZEAMMB73_014139 [Zea mays]
Length = 350
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 35/121 (28%)
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI----- 240
LL N V DTA I+ASMKRDW+ T RKPSGLCGAALY++AL+HG ++K+DI
Sbjct: 141 LLGRRNNDVSDTALRIVASMKRDWMQTRRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 200
Query: 241 ----------------------IEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHK 277
IE+F+A E + E V+ +LP +G E+LCKHK
Sbjct: 201 VCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHLPKSG-------EILCKHK 253
Query: 278 D 278
+
Sbjct: 254 E 254
>gi|340058194|emb|CCC52548.1| putative transcription factor, fragment [Trypanosoma vivax Y486]
Length = 537
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR----TIQSEYGASRERLMEKAFD 76
+ C CG V++D F + F + S +R I ++R + E A
Sbjct: 20 ITCTLCGDVVQDPQFELDPVFARGEKSTRLRSLGHLRPTRGVINLRLSSARPSI-EAARR 78
Query: 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
M L + SD++V A Y +AV+ N G R V + LY CR++ ++
Sbjct: 79 GMTSFARQLAV--SDDMVETALAVYKMAVSMNAVSGARP-VVLCAALYAVCRRERTSHMV 135
Query: 137 IDFSNYLNINVYELGAVYLQL-CQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKV 194
DF+ N Y++ + Y+QL C+ + L +DPS +H+F ++L L V
Sbjct: 136 YDFAEVAGENPYDILS-YMQLICETTHTD-----LPVIDPSCMVHRFAEQLNLGHQTAAV 189
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
A +L +M+ DWI GR+P G+C AAL V+ + S ++
Sbjct: 190 VICALKVLRAMRDDWIACGRRPMGVCVAALLVACYMFNIPRSPDEV 235
>gi|407408753|gb|EKF32070.1| hypothetical protein MOQ_004090 [Trypanosoma cruzi marinkellei]
Length = 602
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 18/228 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKN--AAGQSQLSGNFVRTIQSEYGA---SRERLMEKAF 75
+ C CG +++D + F + A +S S R + G S E A
Sbjct: 20 VTCTLCGDIVQDQQLELDPVFARGEKANTRSLRSLGHFRPTRGVIGTRMPSARPSTEAAR 79
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
M + L+I SD++V +A Y +AV N G R + ++ LY CR++ +
Sbjct: 80 RGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-AILSAVLYAVCRRERTSHM 136
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GNK 192
+ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G G
Sbjct: 137 IYDFSDVTGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGSMTGPV 191
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
VC A +L +M+ DWI GR+P G+C +A+ V+ + S ++
Sbjct: 192 VVC--ALKVLRAMRDDWIACGRRPMGVCVSAILVACYMFNIPRSPDEV 237
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ L
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV R +GR E V A+C+Y ACR P L + S+ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G Y + + L + + +K P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSYRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRKAVEILEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANL 259
R +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E + +
Sbjct: 238 RKGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIKV 297
Query: 260 P 260
P
Sbjct: 298 P 298
>gi|157820901|ref|NP_001100231.1| transcription factor IIIB 90 kDa subunit [Rattus norvegicus]
gi|149044025|gb|EDL97407.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 686
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 141/335 (42%), Gaps = 81/335 (24%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+N+ G S G FV S GA + + F
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFV----SLDGAGKTPTLGGGFH------ 74
Query: 83 NALNIGESDEIV-------------HVAKRFYGIAVARNFTKGRRTEQVQA------SCL 123
+N+G+ H + G+ A + G A L
Sbjct: 75 --VNLGKESRAQTLQNGILYFILADHGVGQDAGVGAAPHPPPGEPVATEPALPGHSLQLL 132
Query: 124 YLACRQKSKP--------------FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
C+Q S P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 133 QDGCKQASYPRTENGPCDCCLPLLDMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-- 190
Query: 170 LKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 191 ---IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAA 247
Query: 229 LTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACG 286
H DF KE+ V KV S + + L + +DT P +
Sbjct: 248 RMH-----------DFRRTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS-- 283
Query: 287 LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+ +EFM I LE DPP++ +R+ +K
Sbjct: 284 --QLTIDEFMKID--LEEECDPPSYTAGQRKLRMK 314
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 375 TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
+P D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA
Sbjct: 442 SPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEARI 501
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
A K EL KE + K++ + + A TA EA
Sbjct: 502 AKEK------------------ELGI---------YKEHKPKKSCKRREPILASTAGEAI 534
Query: 495 RRMLTKKRLSSKINYDVLEKL 515
+ML +K++SSKINY VL L
Sbjct: 535 EKMLEQKKISSKINYSVLRDL 555
>gi|345311738|ref|XP_003429146.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit-like [Ornithorhynchus anatinus]
Length = 618
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 49/287 (17%)
Query: 37 TEATF-VKNAAGQS-QLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIV 94
T ++F + AG++ L G F + E SR + ++ + + N L + + +
Sbjct: 2 TSSSFCISLGAGKTPSLGGGFHVNLGKE---SRAQTLQNGKRQIHHLGNQLQLNQ--HCL 56
Query: 95 HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 154
A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +
Sbjct: 57 DTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTF 116
Query: 155 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGR 214
L L + L I + +DP +++ +F L G N I
Sbjct: 117 LLLARELCINAPA-----IDPCLYIPRFAHMLEFGDNNPEIPNPAAIATV---------- 161
Query: 215 KPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLC 274
P AL V+A H + + ++I R ++ E S + + L
Sbjct: 162 -PPAQLELALLVAARMHDFRRTVKEVI-----RVVKVCE-------------STLRKRLT 202
Query: 275 KHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVK 321
+ +DT + +EFM I LEG DPP+F +R+ +K
Sbjct: 203 EFEDTPT------SQLTIDEFMKID--LEGECDPPSFTAGQRKLKIK 241
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ N+ E K +W + N EYL+EQ KEA A K
Sbjct: 379 DPNENSGDGELDLSGIDDSEIDRYILNDNEARIKAELWMKENAEYLKEQKEKEARIAKEK 438
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++++ + A TA EA +ML
Sbjct: 439 ------------------ELGI---------YKEHKPKKSSKKREPIQASTAGEAIEKML 471
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY+VL+ L
Sbjct: 472 EQKKISSKINYNVLKDL 488
>gi|389601476|ref|XP_001565544.2| putative transcription factor [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505058|emb|CAM39038.2| putative transcription factor [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 696
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 117/255 (45%), Gaps = 30/255 (11%)
Query: 5 SSCARHVTGHRPYDSQ---LCCDRCGKVLEDHNFSTEATFVKNA-------AGQSQLSGN 54
SSCA H T D Q C CG V+ + + + F + A G L+G+
Sbjct: 2 SSCA-HPTSALFVDRQNGRTTCTICGDVVMGNQYELDPVFAQGARQPTSAGGGFRSLTGS 60
Query: 55 FVRTIQSEYGASRERL-------MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
F R S G + + ++KA +M + L I S++ V A Y +A+
Sbjct: 61 F-RPATSYKGTNTSMVNTHSRPTIDKARREMLNISRQLEI--SEDTVERALGIYKVALNL 117
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N G R V +CLY ACR++ ++ DFS + + + L Q+ YI +
Sbjct: 118 NVVSGTRP-SVLCACLYAACRRERTSHVIYDFSETNGEDPHTI------LSQLKYICHAT 170
Query: 168 NV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
+ + +DPS ++ +F +++ L K V A +L +M+ DWI+ GR+P G+C AAL
Sbjct: 171 HTEVPVIDPSCYVQRFAEQMDLGPQTKDVVVCALKVLRAMQDDWISCGRRPMGVCAAALL 230
Query: 226 VSALTHGLKFSKSDI 240
V+ G+ + +
Sbjct: 231 VACYVFGISRTPEQV 245
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 131/302 (43%), Gaps = 55/302 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 185 EIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAAN 258
R +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 237 YRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIK 296
Query: 259 LP 260
+P
Sbjct: 297 VP 298
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D STE ++ +G + +R QS S ER + A ++ ++ L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILD 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 235 EAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 294
Query: 257 ANLP 260
+P
Sbjct: 295 IKVP 298
>gi|242018725|ref|XP_002429824.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
gi|212514842|gb|EEB17086.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
Length = 184
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 16 PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------- 65
P C CG VLE + + F NA G S G FV + S+ GA
Sbjct: 18 PARGDAVCTNCGSVLESNIIVSSVQFEDNAHGGSTAIGQFVAS-DSKGGARSFGGSFHTG 76
Query: 66 ----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
S+E + A + + + + + + + +A F+ +A++R+ T+GR+T V A+
Sbjct: 77 LGVESKEITLRNAKKKITDLAHQMRLNQ--HCIEIAYNFFKMALSRHLTRGRKTGNVVAA 134
Query: 122 CLYLACRQKSKPFLLIDFSNYLN-INVYELGAVYLQLCQVLYI 163
C+Y+ CR + +LIDF + L+ + VYELG YL+L Q L I
Sbjct: 135 CVYMTCRMEGTAHMLIDFCDVLDTVGVYELGRTYLKLSQALCI 177
>gi|389852789|ref|YP_006355023.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
gi|388250095|gb|AFK22948.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
Length = 261
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L
Sbjct: 26 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITSQLK 85
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 86 LPKHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVE 143
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 144 KKEIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILE 195
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
R +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 196 EAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLG 255
Query: 257 ANLP 260
+P
Sbjct: 256 IKVP 259
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 113/272 (41%), Gaps = 45/272 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLED---------HNFSTE---------------- 38
C SC + +L C CG V+E +F E
Sbjct: 12 CPSCGSESVTYDKSTGELVCQNCGYVIEGDAIDYGREWRSFEDERDEGKGRMGSPLSYAK 71
Query: 39 -----ATFVKNAAGQSQLSGNFVRTI------QSEYGASRERLMEKAFDDMRQMKNALNI 87
+T + A+ +LS RT Q + ER ++ A ++R+ N L++
Sbjct: 72 YDKGTSTVIGKASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRRASNRLHV 131
Query: 88 GESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINV 147
S+ I A + Y A+ R +GR E V A LY A R+ ++P L + S+ +
Sbjct: 132 --SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISDTFEVER 189
Query: 148 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKR 207
E+G Y LC+ L I + PS +++KF L NK V D + +L +
Sbjct: 190 KEVGKAYRLLCRELGIK-----ILPTSPSDYIYKFASE-LKVSNKTVSDAVK-LLKEAED 242
Query: 208 DWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+T+G+ P G+ A LYVS L + K ++ D
Sbjct: 243 KGLTSGKGPMGIAAAVLYVSTLINKEKKTQRD 274
>gi|336270840|ref|XP_003350179.1| hypothetical protein SMAC_01071 [Sordaria macrospora k-hell]
gi|380095574|emb|CCC07047.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 862
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 37/247 (14%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGN----------------FVRT 58
+P+ C CG V +D N +E TF ++++G + + G F R
Sbjct: 63 KPHVVDGTCQTCGMVADDSNIVSEITFGESSSGAAVVHGTHVAFDQGGIRGVGGLAFRRV 122
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+RER + + M+Q L IG+S I +A R+Y NF +GRR +
Sbjct: 123 AGGGASEARERSLREVKAMMQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQN- 179
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI- 177
+ + +LID ++ L ++V+ LG Y ++ L P +
Sbjct: 180 ---------GENNHKIMLIDLADLLKVDVFALGRGYKD-----FLTRFPEFLTGPRPIVI 225
Query: 178 --FLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+++F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H +
Sbjct: 226 EDLIYRFASKLEFLHDTNKVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYR 285
Query: 235 FSKSDII 241
+ +++
Sbjct: 286 RTVREVV 292
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 55/302 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRTLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV R +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G +++V A +IL
Sbjct: 185 EIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSERVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAAN 258
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIK 296
Query: 259 LP 260
+P
Sbjct: 297 VP 298
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 55/302 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 185 EIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAAN 258
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIK 296
Query: 259 LP 260
+P
Sbjct: 297 VP 298
>gi|45954|emb|CAA50006.1| transcription factor IIB [Pyrococcus woesei]
Length = 261
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D STE ++ +G + +R QS S ER + A ++ ++ L
Sbjct: 26 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 85
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 86 LPRHVE--EEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 143
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G Y + + L + + +K P+ +++KF D L G ++KV A +IL
Sbjct: 144 KKEIGRSYRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRRAIEILDEAY 198
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANL 259
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E + +
Sbjct: 199 KRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKV 258
Query: 260 P 260
P
Sbjct: 259 P 259
>gi|312379936|gb|EFR26073.1| hypothetical protein AND_08083 [Anopheles darlingi]
Length = 557
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 163/385 (42%), Gaps = 108/385 (28%)
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMA 246
L G + + TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DI+
Sbjct: 37 LSGEDTRSVMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHDFGRTPNDIV----- 91
Query: 247 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
R ++HE S + + L + +T P + +EFM + LE
Sbjct: 92 RIVKIHE-------------STLRKRLFEFGET--PSSA----LTVDEFMAVD--LEAEQ 130
Query: 307 DPPAFQVA---ERERMVKA----------SAEENSSFERE----------SDSPFMSRVD 343
PPAF+ A ++ER+ K AE +++ +RE S F+ D
Sbjct: 131 GPPAFKAARKKDKERLQKLEEQTTEFNQLQAEIDAALDREMNGRGGKRRRSKYDFIELQD 190
Query: 344 KVQSPEPESIGVPKNCTTQTASNEGEGD----HTKTPGVD-------------------- 379
Q E ++ V + C + +G GD + P V+
Sbjct: 191 SDQFIEESNMSVIRECVSDAGVVDGTGDLGQQGSGVPKVEHKPCIPEGLKPDLKAMCKVS 250
Query: 380 -------ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEA 432
T+E DG D++D E+D Y+ EEE + K +W ++N EYL+E KE
Sbjct: 251 VEVTVPEKTSEQDDGELITDDLNDDEMDAYIMTEEEANTKNQLWMQLNEEYLKELQVKEE 310
Query: 433 AAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE 492
AA K EG ++ A+ GP+ TA E
Sbjct: 311 RAA----------KQREEGKPEKKKRRTTKRKAI------------------GPSSTARE 342
Query: 493 ATRRMLTKKRLSSKINYDVLEKLFD 517
A ++L +K++S+KINYD+L+ L D
Sbjct: 343 AIEKILQEKKISNKINYDILKTLTD 367
>gi|146088536|ref|XP_001466078.1| putative transcription factor [Leishmania infantum JPCM5]
gi|398016374|ref|XP_003861375.1| transcription factor, putative [Leishmania donovani]
gi|134070180|emb|CAM68513.1| putative transcription factor [Leishmania infantum JPCM5]
gi|322499601|emb|CBZ34675.1| transcription factor, putative [Leishmania donovani]
Length = 703
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 25/233 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNA------AGQSQLSGNFVRTIQSEYGA------SRER- 69
C CG V+ + + F ++ G L+G+F R S G S R
Sbjct: 22 CTLCGDVVMSDQYELDPIFAQSGRQPASGGGLRGLAGSF-RPATSHTGTNTSMTHSHSRP 80
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR+
Sbjct: 81 TIDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRR 137
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-L 187
+ ++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 138 ERTSHVIYDFSEVNGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDL 191
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + +
Sbjct: 192 GPQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQV 244
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ + +N G + +R QS S ER + A ++ ++ LN
Sbjct: 65 LLHDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLN 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADMAKVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G +++ A ++L +
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERTRRRAIELLDQVY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANL 259
+T+G+ P+GL AALY++ L G K ++ ++ E R KE+ E + L
Sbjct: 238 NMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEAARVTEVTVRNRYKEMVEKLGLKL 297
Query: 260 P 260
P
Sbjct: 298 P 298
>gi|401423221|ref|XP_003876097.1| putative transcription factor [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492338|emb|CBZ27612.1| putative transcription factor [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 703
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 25/233 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVK------NAAGQSQLSGNFVRTIQSEYGASRERL------ 70
C CG V+ + + F + + G L+G+F R S G + +
Sbjct: 22 CTICGDVVMSDQYELDPIFAQGGRQPASGGGLRGLAGSF-RPATSYKGTNTSMIHSHSRP 80
Query: 71 -MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR+
Sbjct: 81 TIDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRR 137
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-L 187
+ ++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 138 ERTSHVIYDFSELNGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDL 191
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + +
Sbjct: 192 GPQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQV 244
>gi|307192899|gb|EFN75927.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 190
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E TF ++ +G + G FV + +
Sbjct: 6 CRNCGSTSIDTDPARGDAVCTNCGFVLEDQLIVSETTFEESPSGHMMVLGQFVASDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR ++ A + + L + ++ V A FY +A++ T+
Sbjct: 66 ATGFGAAYHVNGKESRGITLQNARKGITHLCAQLRL--NNHCVETAMGFYKMALSYRLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
GR+ QA+C+Y+ CR + +LID S+ L I V+ELG Y++ + L+I
Sbjct: 124 GRKQAHNQAACVYITCRTERTSHMLIDISDVLQICVHELGRTYVKFAKALHI 175
>gi|71754449|ref|XP_828139.1| transcription factor [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833525|gb|EAN79027.1| transcription factor, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 608
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 16/243 (6%)
Query: 5 SSCARHVTGHRPYD---SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
SSC+ H T + D + C CG +++D + F + G + +R +
Sbjct: 2 SSCS-HPTSAQYVDRARGTITCTLCGDIVQDPQLELDPIFARGDKGGRLRALGHLRPTRG 60
Query: 62 EYGA---SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
S +E A M + L++ SD++V A Y +AV+ N G R +
Sbjct: 61 SVSVRMPSARPSIEAARRGMATIARQLDV--SDDMVEAALGLYKLAVSLNAVSGARP-AI 117
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
+ LY CR++ ++ DF++ + Y++ + +C+ A + V +DPS
Sbjct: 118 LCAVLYAMCRRERTSHMVFDFADATGESPYDILSYMHLVCE----ATRTEV-PVIDPSCV 172
Query: 179 LHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+H+F +++ L + V A +L +M DWI GR+P G+C AAL V+ + S
Sbjct: 173 VHRFAEQMNLGQMTRSVVVCALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSP 232
Query: 238 SDI 240
++
Sbjct: 233 DEV 235
>gi|157870494|ref|XP_001683797.1| putative transcription factor [Leishmania major strain Friedlin]
gi|68126864|emb|CAJ04697.1| putative transcription factor [Leishmania major strain Friedlin]
Length = 703
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 25/233 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVK------NAAGQSQLSGNFVRTIQSEYGA------SRER- 69
C CG V+ + + F + + G L+G+F R S G S R
Sbjct: 22 CTICGDVVTTDQYELDPIFAQGGRQPASGGGLRGLAGSF-RPATSYKGTHTGVIHSHSRP 80
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR+
Sbjct: 81 TIDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRR 137
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-L 187
+ ++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 138 ERTSHVIYDFSEINGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDL 191
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + +
Sbjct: 192 GPQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQV 244
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 111/274 (40%), Gaps = 45/274 (16%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED---------HNFSTE-------------- 38
+ C SC + +L C CG V+E +F E
Sbjct: 10 IKCPSCGSTSVMYDKTTGELVCQNCGYVIESDTIDYGREWRSFEDERDEGKGRMGSPLSY 69
Query: 39 -------ATFVKNAAGQSQLSGNFVRTI------QSEYGASRERLMEKAFDDMRQMKNAL 85
+T + A+ +LS RT Q + ER ++ A ++R N L
Sbjct: 70 AKYDKGTSTVIGKASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRHASNRL 129
Query: 86 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145
++ S+ I A + Y A+ R +GR E V A LY A R+ ++P L + S +
Sbjct: 130 HV--SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISETFEV 187
Query: 146 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y LC+ L I + PS +++KF L G + K A +L
Sbjct: 188 ERKEVGKAYRLLCRELGIK-----ILPSSPSDYIYKFASEL--GVSNKTVSDAVKLLKEA 240
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +T+G+ P G+ A LYV+ L + K ++ D
Sbjct: 241 EDKGLTSGKGPMGIAAAVLYVATLINKEKKTQRD 274
>gi|332028617|gb|EGI68652.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 182
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----IQSEYGAS--------RERL 70
C CG VLED ++ TF ++++G+ ++ G+FV + +GAS R
Sbjct: 25 CIECGFVLEDSVIISQTTFEESSSGKVRVPGHFVANDSTGSATNFGASYYVNGKESRRIT 84
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
++ A + + L +G + + + FY +A+ + T+GR+ QA+C+Y+ CR +
Sbjct: 85 LQNARKGITHL--CLQLGLNQNCIETSVNFYKMALCYHLTRGRKQAHNQAACVYITCRIE 142
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
+LID S+ L+I V+ELG YL+ L I
Sbjct: 143 KTEHMLIDISDVLHICVHELGRTYLRFTTALRI 175
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L+
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLS 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 235 EAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKELVEKLN 294
Query: 257 ANLP 260
+P
Sbjct: 295 LKVP 298
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 9/216 (4%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV R +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G ++KV A ++L
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRRAIELLEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+T+G+ P+GL AALY+++L G K ++ ++ E
Sbjct: 238 NRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAE 273
>gi|238606146|ref|XP_002396638.1| hypothetical protein MPER_03085 [Moniliophthora perniciosa FA553]
gi|215469580|gb|EEB97568.1| hypothetical protein MPER_03085 [Moniliophthora perniciosa FA553]
Length = 136
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG V+E++ E TF + ++G + + G++V S G SRE+ +
Sbjct: 5 CVVCGTVVEENTIVNEVTFGETSSGAAMVQGSYVAQGASHARMGGPYGNRGSGESREQTI 64
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK- 130
A ++ + N L + E + A R Y +AV FTKGR++ V A CLY+ACRQK
Sbjct: 65 ANASRKIQTIANVLRLSEV--VCMAATRLYTLAVEHKFTKGRKSLNVVAVCLYVACRQKE 122
Query: 131 SKPFLLIDFSNYL 143
++ ++LIDFS+ L
Sbjct: 123 TRNYMLIDFSDLL 135
>gi|156062930|ref|XP_001597387.1| hypothetical protein SS1G_01581 [Sclerotinia sclerotiorum 1980]
gi|154696917|gb|EDN96655.1| hypothetical protein SS1G_01581 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 708
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 42/234 (17%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEYG--- 64
+P C CG V++D N E F ++++G + + G+ V +T+ +
Sbjct: 51 KPQIEDGVCHNCGTVVDDSNIVAEIQFGESSSGAAVVQGSHVGADQGGAQTLGPAFRRAG 110
Query: 65 ---ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
+++E + + M+ + N L I E+ +V V + + +A NF +GRRT+ V A
Sbjct: 111 GGESNKENTLREGKRIMQALANQLGISEN--VVGVGHQIFKLASMNNFIQGRRTDLVAA- 167
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
+NV+ LG + L + + +A ++ + V P + K
Sbjct: 168 -----------------------VNVFTLGRYFKALHKQISLA--TDGILPVLPEDLIWK 202
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
F +L +KV D A ++ M DW+ GR+PSG+CGA L ++A + +
Sbjct: 203 FASKLEFYEQTEKVADDAIRMVRRMSLDWMVMGRRPSGVCGACLILAARMNNFR 256
>gi|2392147|pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 33 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSY-- 90
Query: 157 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 213
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 91 ----RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 144
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANLP 260
+ P+GL AALY+++L G K ++ ++ E R KEL E + +P
Sbjct: 145 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 198
>gi|6573567|pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 34 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSY-- 91
Query: 157 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 213
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 92 ----RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 145
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANLP 260
+ P+GL AALY+++L G K ++ ++ E R KEL E + +P
Sbjct: 146 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 199
>gi|361127358|gb|EHK99329.1| putative Transcription factor IIIB 60 kDa subunit [Glarea
lozoyensis 74030]
Length = 775
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 41/234 (17%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-------------EYGASRE 68
C CG V++D N +E F +N++G + + G+++ Q G RE
Sbjct: 74 ICMGCGTVIDDSNIVSEVQFGENSSGAAVVQGSYLGADQGGVRSSGPGLRGMGNEGEGRE 133
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ M Q+ L+I ES + H + +AV NF +GRRTE V A
Sbjct: 134 ATIRDGKRIMNQLAQQLHIQES-TVTH-GVQILKLAVMNNFIQGRRTEMVCAP------- 184
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
NV++LG + L + + + + V P + +F +L
Sbjct: 185 ---------------QCNVFKLGRTFKALHTSVTL---NGGIYPVVPEDLIWRFAAKLEF 226
Query: 189 GG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G +KV + A ++ M DW+ GR+PSG+CGA L ++A + + + ++++
Sbjct: 227 GQLTEKVAEDAVRMVQRMSLDWMVVGRRPSGVCGACLILAARMNNFRRTITEVV 280
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 16/241 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ + +N G + +R QS S ER + A ++ ++ LN
Sbjct: 65 LLHDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLN 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +G+ E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADIAKVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G +++ A ++L
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERTRRRAIELLEKAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANL 259
+T+G+ P+GL AALY++ L G K ++ ++ E R KE+ E + L
Sbjct: 238 GMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEVARVTEVTVRNRYKEMVEKLGLKL 297
Query: 260 P 260
P
Sbjct: 298 P 298
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 16/241 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N +G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G ++KV A IL
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRRAIAILEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANL 259
+T+G+ P+GL AALY++ L K ++ ++ E R KEL E + +
Sbjct: 238 EKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKELVEKLNLKI 297
Query: 260 P 260
P
Sbjct: 298 P 298
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G E+ A Y A++ + GR E V + LY
Sbjct: 134 SKERNLKQALGEIERMASAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ S P + + +N I+ E Y + + L + + DP+ ++ +F
Sbjct: 192 SARQLSTPRSIDEVANVSRIDEMEFKRTYRYIVRELSLE-----VAPADPAQYVPRFASD 246
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L LP +V +R+++++ + D +T+G+ P GL AA+Y S+L K ++S++ E
Sbjct: 247 LDLP---DEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSE 301
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S +S ER + A D+ ++ + L G I A Y AV + +GR E V
Sbjct: 274 RSSIASSIERNLTIAMGDLERISSYL--GLPSNIREAAALLYRKAVEKGLIRGRLIESVV 331
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ +Y+ CRQ P L + S I E+G Y L + LY+ + +P ++
Sbjct: 332 AAVIYMICRQYGIPRTLDEISEVSGITKKEIGRTYRFLKKELYVD-----VPLTNPIYYV 386
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F L G + KV + A++IL + +GR P+G+ AA+Y++++ G + ++ +
Sbjct: 387 PRFASAL--GLSGKVQEKAKEILNEAVEKGLISGRGPTGVAAAAVYIASVMMGERRTQKE 444
Query: 240 IIE 242
+ E
Sbjct: 445 VAE 447
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E + + LY AC
Sbjct: 176 ERNLQFALSEIDRMSSALGVPRS--VREVASVMYRRALSEDLIRGRSIEGMSTAVLYAAC 233
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+ Y + Q L + ++ VDP +L +F +L
Sbjct: 234 RQEGIPRSLSEVTEVSRVENKEIARTYRYVSQELELE-----MRPVDPKKYLPRFCSQL- 287
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
++++ A +I+ + I +G+ P+G AA+Y S+L +G K ++ + E
Sbjct: 288 -DVSERIQSKAEEIIDTSAEQGILSGKSPTGFAAAAIYSSSLLYGEKKTQKQVAE 341
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLR 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + + ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ ++ KF D L G ++KV A ++L
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPTDYVSKFADEL--GLSEKVRRRAIELLE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
+T+G+ P+GL AALY++ + G + ++ ++ E R KEL E +
Sbjct: 235 EAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKELIEKLN 294
Query: 257 ANLP 260
+P
Sbjct: 295 LKVP 298
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLR 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + + ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ ++ KF D L G ++KV A ++L
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPTDYVSKFADEL--GLSEKVRRRAIELLE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
+T+G+ P+GL AALY++ + G + ++ ++ E R KEL E +
Sbjct: 235 EAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKELIEKLN 294
Query: 257 ANLP 260
+P
Sbjct: 295 LKVP 298
>gi|414587926|tpg|DAA38497.1| TPA: hypothetical protein ZEAMMB73_605143 [Zea mays]
Length = 316
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 24/119 (20%)
Query: 398 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 457
EVDGY HNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 67 EVDGYFHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------------------- 103
Query: 458 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
A AA + +K++KR + K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 104 -AELAARGIDPEAGKKKRKRNEDMKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 161
>gi|414884212|tpg|DAA60226.1| TPA: hypothetical protein ZEAMMB73_105752 [Zea mays]
Length = 319
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 24/119 (20%)
Query: 398 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 457
EVDGY HNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 67 EVDGYFHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------------------- 103
Query: 458 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 516
A AA + +K++KR + K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 104 -AELAARGIDPEAGKKKRKRNEDMKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 161
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 15/219 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY--GASRERLMEKAFDDMRQMKNALN 86
++ D ST KN +G + +R QS G + +R + A ++ ++ + L
Sbjct: 68 LIHDKGLSTNIGSDKNVSGLMREKMYRLRKWQSRLRVGDATDRNLAFALTELDRITSQLK 127
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 128 LPRY--VKEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVD 185
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ ++ KF D L G ++K A +IL
Sbjct: 186 KKEIGRSF------RFIARNLNLTPKKLFVKPTDYVTKFADEL--GLSEKTRRRAVEILE 237
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ IT+G+ P+GL AALY+++L G K ++ ++ E
Sbjct: 238 MAYKLGITSGKSPAGLVAAALYIASLLEGEKRTQREVAE 276
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPIKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G ++K A IL + + + I+ G+ P GL AALYV+ +T+G ++ D+ E
Sbjct: 226 AGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAE 280
>gi|302774819|ref|XP_002970826.1| hypothetical protein SELMODRAFT_94206 [Selaginella moellendorffii]
gi|300161537|gb|EFJ28152.1| hypothetical protein SELMODRAFT_94206 [Selaginella moellendorffii]
Length = 74
Score = 72.0 bits (175), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA I+ASMKRDWI TGRKPSG+CGAAL+VSA HG + SKSD++
Sbjct: 1 TALRIVASMKRDWIQTGRKPSGVCGAALFVSAQIHGFECSKSDVV 45
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRSVTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASHLA 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + + ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSKVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V PS +++KF D L G ++KV A ++L
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPSDYVNKFADEL--GLSEKVRKRAIELLE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
+T+G+ P+GL AALY++ L + ++ ++ E R KEL E +
Sbjct: 235 EAYNRGLTSGKSPAGLVAAALYIAGLMEEERRTQREVAEVARVTEVTVRNRYKELVEKLN 294
Query: 257 ANLP 260
+P
Sbjct: 295 LKVP 298
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DSVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ E
Sbjct: 226 AGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAE 280
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPIKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G ++K A IL + + + I+ G+ P GL AALYV+ +T+G ++ D+ E
Sbjct: 226 AGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAE 280
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D + NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGHASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ E
Sbjct: 226 AGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAE 280
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ E
Sbjct: 226 AGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGESKTQRDVAE 280
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY AC
Sbjct: 135 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAAC 192
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P L + + Y ++ E+G Y + + L + L P+ ++ +F L
Sbjct: 193 RQAGVPRTLDEIATYSRVDRKEIGRTYRFITRELGLK-----LMPTSPADYIPRFCAAL- 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G + +V A +I+ + +T+GR P+G+ AALYV+++ G + ++ ++ E
Sbjct: 247 -GLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAE 300
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DSVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ E
Sbjct: 226 AGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAE 280
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 15/219 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N G + +R QS S ER + A ++ ++ + L
Sbjct: 68 LLHDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 127
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y A+ + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 128 LPRHVE--EEAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVD 185
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+ + +IA N+ + V P+ +++KF D L G ++KV A ++L
Sbjct: 186 KKEIARSF------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIELLE 237
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+T+G+ P+GL AALY+++L G K ++ ++ E
Sbjct: 238 EAYNRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAE 276
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + +V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIIE-------DFMARKKELHEGVAANLPNN 262
+I + R KEL + + ++P
Sbjct: 279 EIAQVAGVTEVTVRNRYKELTQELKISIPTQ 309
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 9/216 (4%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N +G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y +CR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G +++V A IL
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERVRRRAIAILEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+T+G+ P+GL AALY++ L K ++ ++ E
Sbjct: 238 EKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAE 273
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 116 DRNFRQAFSELDRLKDKLAVG--DTVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D +N NI ++ Y L + L + + V+P + + +
Sbjct: 174 RDTETPRTLKDIANASNIKRKDIARCYRLLLRELGLK-----MPVVNPVNCISRIAS--I 226
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ E
Sbjct: 227 AGLSEKTKREASKILKNAEEVKISAGKDPMGLAAAALYVACVTNGENKTQRDVAE 281
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R ++AF+++ ++K+ L++ SD +V A Y A+ + KGR + AS LY AC
Sbjct: 118 DRNFKQAFNELYRLKDKLSL--SDSVVEKAAYIYRKAINKKLVKGRTISSLMASALYAAC 175
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFT 183
R+ P L D S+ NI +L + Y L L + D + + ++ I + + T
Sbjct: 176 REVGTPRTLKDISDTTNIKKRDLASNYRLLVNELDLKIPVVDSVHNVARIASKIGISEKT 235
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
RL A ++L + +T G+ P L ALY+S G +S+ D+ E
Sbjct: 236 KRL-----------ATELLRKAEESELTAGKNPMSLAATALYISCRKTGENYSQRDLAE 283
>gi|440798130|gb|ELR19198.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 17 YDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------SRER 69
Y++ L C CG VLE+ N E TF ++A G S G FV S + SRE
Sbjct: 17 YENSLICLACGWVLEESNIVVEQTFSESAGGSSVADGQFVSATGSSFRGMRGVNRESREI 76
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+E A + M +L G + A R + +A+ NF +GR++E V +SCLY+ CR+
Sbjct: 77 TLENAKRRISSMAGSL--GLTAHHTESAFRLFLLALQHNFVRGRKSEYVISSCLYVVCRR 134
Query: 130 K 130
+
Sbjct: 135 E 135
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 9/216 (4%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N +G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y +CR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G +++V A IL
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GMSERVRRRAIAILEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+T+G+ P+GL AALY++ L K ++ ++ E
Sbjct: 238 DRGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAE 273
>gi|429963838|gb|ELA45836.1| hypothetical protein VCUG_02677, partial [Vavraia culicis
'floridensis']
Length = 247
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 139/352 (39%), Gaps = 116/352 (32%)
Query: 173 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+DPS+FLH+F +L N+K+ A +++ MKRDWI GR+P+ LCGAAL ++ +G
Sbjct: 5 IDPSLFLHRFFAKL-KLKNEKILFFAMRLISRMKRDWIVVGRRPNNLCGAALVTASRVYG 63
Query: 233 LKFSKSDIIE-------DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFAC 285
+ S ++++ R KE+ + +ANL
Sbjct: 64 EERSVLEVVKAVRVSPHTINIRLKEMCDTQSANL-------------------------- 97
Query: 286 GLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKV 345
+F + LE DPP + +MV E+ SD
Sbjct: 98 -----TVSDFFNV--WLEKEEDPPI--TKHKLKMVDDKTIESGMLTPTSD---------- 138
Query: 346 QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHN 405
E +++ + +N T+ D+ TE S SD E++ ++
Sbjct: 139 -ISEKDTLAIDENFLTKFD--------------DSGTEESIDSD--------ELECFILT 175
Query: 406 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 465
+EE K+ +W M +L+E+A +
Sbjct: 176 KEEAMQKEKVWNSMYDNFLKERAVR----------------------------------- 200
Query: 466 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 517
A +R+ + +KR K T EA R ++ +K++++KINY+ L+ LFD
Sbjct: 201 -ASTRRREPKKR----KPRETYDTVEEALRGVIKEKKMTNKINYEALKGLFD 247
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 105 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 162
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 163 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 217
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 218 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 275
Query: 239 DIIE-------DFMARKKELHEGVAANLPNN 262
+I + R KEL + + ++P
Sbjct: 276 EIAQVAGVTEVTVRNRYKELTQELKISIPTQ 306
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 18/219 (8%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLME-------KAFDDMRQMK 82
+ D F+T + A +L G ++ +R R++ +A +++ ++
Sbjct: 69 VHDMGFATAIDYSNKDAAGRKLMGKRQELVKLRKWQARTRILTSMDRNLAQAMNELERLG 128
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
+ LN+ + A R Y AV + +GR E V A+ +Y+ACR+ P L + S +
Sbjct: 129 DLLNL--PSHVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSLDEVSRH 186
Query: 143 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDI 201
I ++ Y L + L I + DP ++ + L LPG V A ++
Sbjct: 187 TRIGRKDIARCYRLLLRELDIK-----VGTTDPVDYVPRIVHALGLPG---TVVKKAVEL 238
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L + +T G+ P+GL AA+YV++L G K ++ ++
Sbjct: 239 LNVAREHGVTGGKDPAGLAAAAVYVASLELGEKRTQKEV 277
>gi|261333929|emb|CBH16923.1| transcription factor IIIb, putative [Trypanosoma brucei gambiense
DAL972]
Length = 543
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 9/171 (5%)
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+E A M + L++ SD++V A Y +AV+ N G R + + LY CR++
Sbjct: 8 IEAARRGMATIARQLDV--SDDMVEAALGLYKLAVSLNAVSGARP-AILCAVLYAMCRRE 64
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
++ DF++ + Y++ + +C+ A + V +DPS +H+F +++ L
Sbjct: 65 RTSHMVFDFADATGESPYDILSYMHLVCE----ATRTEV-PVIDPSCVVHRFAEQMNLGQ 119
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ V A +L +M DWI GR+P G+C AAL V+ + S ++
Sbjct: 120 MTRSVVVCALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSPDEV 170
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIIE-------DFMARKKELHEGVAANLPNN 262
+I + R KEL + + ++P
Sbjct: 279 EIAQVAGVTEVTVRNRYKELTQELKISIPTQ 309
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIIE-------DFMARKKELHEGVAANLPNN 262
+I + R KEL + + ++P
Sbjct: 279 EIAQVAGVTEVTVRNRYKELTQELKISIPTQ 309
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R ++AF+++ ++K+ L + SD +V A Y A+ + KGR + AS LY AC
Sbjct: 115 DRNFKQAFNELYRLKDKLTL--SDSVVEKAAYIYRKAINKKLVKGRTISALMASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFT 183
R+ P L D S+ NI +L A Y L L + + + + ++ I + + T
Sbjct: 173 REVGTPRTLKDISDTTNIKKRDLAANYRLLVNELDLKIPVVNSVHNVARIASKIGISEKT 232
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
R+ A +IL + I+ G+ P L ALY+S G +S+ D+ E
Sbjct: 233 KRI-----------ATEILRKAEESEISAGKNPMSLAATALYISCRKTGENYSQRDLAE 280
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 17/223 (7%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMR 79
K+L D ST + K+A+G++ S + +R + A SR+R +++A ++
Sbjct: 87 KLLHDEGLSTSIGWADKDASGRTLSSSQREKMSRLRVWDERFRATDSRDRNLKQALGEID 146
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E + + LY A RQ P L +F
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEF 204
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ + Y L + L + + DP+ +L +FT L + + AR
Sbjct: 205 EPISRVRRQKYARAYRYLARQLELG-----IAPADPAEYLPRFTSDLDLDDDLE--RQAR 257
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
D+L+ +K+ +G+ P+GL A+Y + L G + ++ ++ E
Sbjct: 258 DLLSELKKTGEHSGKNPTGLAAGAIYAAGLLTGDRITQGEVAE 300
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V SCLY+AC
Sbjct: 130 ERNLQFALSEIDRMASALGVPRS--VREVASVVYRRALNEDLIRGRSIEGVSTSCLYVAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+S P L + ++ + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 188 RQESIPRSLEEVADVSRVEKKEIGRTYRYIAQELSLE-----MKPVDPKEYVPRFCSAL- 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V AR+I+ + + + +G+ P+G
Sbjct: 242 -DSSEEVQAKAREIIDTTAEEGLLSGKSPTGF 272
>gi|9909704|emb|CAC04514.1| transcription factor II B-related factor [Homo sapiens]
Length = 222
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+++ G S G FV T+ + SR +
Sbjct: 5 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 64
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR
Sbjct: 65 TLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRT 122
Query: 130 KSKPFLLIDFSNYLNIN 146
+ P +L+D S+ L ++
Sbjct: 123 EGTPHMLLDLSDLLQVD 139
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ AS +R + +A ++ ++K+ L + SD +V A Y A+ + +GR +
Sbjct: 90 RSKVHASSDRNLRQALSELTRLKDKLAV--SDAVVEKAAYIYRKALDKGLVRGRSISALI 147
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
AS LY ACR P L D S+ NI ++ Y L Q L + + VDP +
Sbjct: 148 ASALYAACRDTETPRTLKDVSDAGNIKKKDIARCYRILHQELELK-----MPVVDPIQCI 202
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +L G ++K A +L + + + G+ P GL AALY+S +++ ++ D
Sbjct: 203 ARIASKL--GISEKTKRYAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRD 260
Query: 240 IIE 242
I E
Sbjct: 261 IAE 263
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DI 240
+I
Sbjct: 279 EI 280
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ AS +R + +A ++ ++K+ L + SD +V A Y A+ + +GR +
Sbjct: 90 RSKVHASSDRNLRQALSELTRLKDKLAV--SDAVVEKAAYIYRKALDKGLVRGRSISALI 147
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
AS LY ACR P L D S+ NI ++ Y L Q L + + VDP +
Sbjct: 148 ASALYAACRDTETPRTLKDVSDAGNIKKKDIARCYRILHQELELK-----MPVVDPIQCI 202
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +L G ++K A +L + + + G+ P GL AALY+S +++ ++ D
Sbjct: 203 ARIASKL--GISEKTKRYAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRD 260
Query: 240 IIE 242
I E
Sbjct: 261 IAE 263
>gi|338753414|ref|NP_001229719.1| transcription factor IIIB 90 kDa subunit isoform 8 [Homo sapiens]
gi|16876927|gb|AAH16743.1| BRF1 protein [Homo sapiens]
gi|119602314|gb|EAW81908.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_c
[Homo sapiens]
gi|410332911|gb|JAA35402.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 208
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+++ G S G FV T+ + SR +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNIN 146
+ P +L+D S+ L ++
Sbjct: 143 EGTPHMLLDLSDLLQVD 159
>gi|426378233|ref|XP_004055847.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Gorilla
gorilla gorilla]
Length = 208
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+++ G S G FV T+ + SR +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNIN 146
+ P +L+D S+ L ++
Sbjct: 143 EGTPHMLLDLSDLLQVD 159
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTE 116
+Q+ Y ER + +A +++ ++ + L I ++ DE + V Y + + +GR E
Sbjct: 139 VQTSY----ERNIIQAMNELSRISSQLGIPKACVDEAMGV----YEQVLTKGLVRGRSVE 190
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDP 175
+ A+CL++ACR+ P L + S Y + E+ + IA E V L DP
Sbjct: 191 AIVAACLHMACRKIGMPRSLDEISQYTRASRKEVARCF------RLIARELGVRLPLSDP 244
Query: 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+++ + ++L G ++ A +IL KR +T G+ P+GL AA+Y+++L G
Sbjct: 245 KLYVPRIVEQLKLSG--EILKEALNILEQAKRKGLTAGKDPAGLAAAAVYIASLLRG 299
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER + +A +++ ++ + L I ++ V A Y + + +GR E +
Sbjct: 139 VQTSY----ERNIIQAMNELSRISSQLGIPKA--CVDEAMGIYEQVLTKGLVRGRSVEAI 192
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSI 177
A+CL++ACR+ P L + S Y + E+ + IA E V L DP +
Sbjct: 193 VAACLHMACRKIGMPRSLDEISQYTRASRKEVARCF------RLIARELGVRLPLSDPKL 246
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
++ + ++L G ++ A +IL KR +T G+ P+GL AA+Y+++L G
Sbjct: 247 YVPRIVEQLKLSG--EILKEALNILEQAKRKGLTAGKDPAGLAAAAVYIASLLKG 299
>gi|291416192|ref|XP_002724331.1| PREDICTED: transcription initiation factor IIIB, partial
[Oryctolagus cuniculus]
Length = 502
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D T + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 255 DPTDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEARIAKEK 314
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 315 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 347
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 348 EQKKISSKINYSVLRGL 364
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 31/150 (20%)
Query: 175 PSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
P +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H
Sbjct: 1 PCLYIPRFAHLLEFGERNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-- 58
Query: 234 KFSKSDIIEDFMARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSC 291
DF KE+ V KV S + + L + +DT +
Sbjct: 59 ---------DFRRTVKEVISVV---------KVCESTLRKRLTEFEDTPT------SQLT 94
Query: 292 YEEFMTISEGLEGGADPPAFQVAERERMVK 321
+EFM I LE DPP++ +R+ +K
Sbjct: 95 IDEFMKID--LEEECDPPSYTAGQRKLRMK 122
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M A +G I +A Y AV +GR E V A+CLY AC
Sbjct: 115 ERNLAFALSELDRM--ASQLGLPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L + ++ E+G Y + + L++ L P ++ +F D+L
Sbjct: 173 RMAKVPRTLDEIEEVARVDKKEIGRSYRFIARELHLR-----LTPTSPIDYVSRFADQL- 226
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +++ + A IL + +T+GR P G+ AALY++++ G K ++ ++ E
Sbjct: 227 -GLSERTKNRAVKILQKAIKLGLTSGRGPMGVAAAALYIASVLEGEKKTQREVAE 280
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 93 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152
+ VA Y AV + +GR E + ++ LY ACR + P L + + + E+G
Sbjct: 135 VKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIGR 194
Query: 153 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITT 212
Y L + L + L+ P ++ +F D L +++ A++IL + IT+
Sbjct: 195 SYRFLARGLGLN-----LRPTSPIEYIDRFGDSL--DVSQRTKKRAKEILQEAIKRGITS 247
Query: 213 GRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANLP 260
G+ P+GL AALYV++L G K ++ ++ E R KEL E + N+P
Sbjct: 248 GKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEKLGINVP 302
>gi|156375639|ref|XP_001630187.1| predicted protein [Nematostella vectensis]
gi|156217203|gb|EDO38124.1| predicted protein [Nematostella vectensis]
Length = 146
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS+C P C CG VLED+ +E F +N+ G + G FV + ++
Sbjct: 5 CSNCGGSDIDLDPSRGDAVCMGCGSVLEDNIIVSEVQFQENSLGGTSAIGQFVSSEGNKA 64
Query: 64 G-------------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
G SR +E + Q+ + L + + + A FY +AV + T
Sbjct: 65 GIGLGTGFRHGLAQESRAITLENGRKRINQLGHQLQMNQ--HCIDTAYNFYKLAVNKRLT 122
Query: 111 KGRRTEQVQASCLYLACRQKSKP 133
+GRRT V A+CLYL CR + P
Sbjct: 123 RGRRTAHVVAACLYLVCRTERTP 145
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 22/202 (10%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M + L+I D++ A Y AV +N +GR E V A LY AC
Sbjct: 121 ERNLSQALQELERMASNLSI--PDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTD 184
R + P L + ++ + E+G Y + + L + N++ PS ++ +F
Sbjct: 179 RITNVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCS 230
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-- 242
+L + + + A +IL S + +T+G+ P+G+ AA+Y+++L G + ++ + E
Sbjct: 231 KLKLSMDTR--NKALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVA 288
Query: 243 -----DFMARKKELHEGVAANL 259
R KEL E + N+
Sbjct: 289 GVTEVTIRNRYKELTEKLQLNV 310
>gi|344238808|gb|EGV94911.1| Transcription factor IIIB 90 kDa subunit [Cricetulus griseus]
Length = 416
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 375 TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 434
+P D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA
Sbjct: 194 SPSGDPKDTSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEARI 253
Query: 435 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 494
A K EL KE + K++ + + A TA EA
Sbjct: 254 AKEK------------------ELGIY---------KEHKPKKSCKRREPILASTAGEAI 286
Query: 495 RRMLTKKRLSSKINYDVLEKL 515
+ML +K++SSKINY VL L
Sbjct: 287 EKMLEQKKISSKINYSVLRDL 307
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 24/247 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNF---VRTIQSEYGASR-----ERLMEKAFDDMRQ 80
++ D ST+ + +Q++G + +R ++ R ER + A ++ +
Sbjct: 65 MIHDKGLSTDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + + + VA Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 125 MAAQMRL--PRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 182
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ E+G Y L + L + L+ P ++ +F D L K A++
Sbjct: 183 AVSKVTKKEIGRSYRFLARGLNLN-----LRPTSPIEYVDRFGDALNVSARTK--KRAKE 235
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHE 253
IL + IT+G+ P+GL AALYV++L G K ++ ++ E R KEL E
Sbjct: 236 ILHEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVE 295
Query: 254 GVAANLP 260
+ N+P
Sbjct: 296 KLNINVP 302
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 24/247 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNF---VRTIQSEYGASR-----ERLMEKAFDDMRQ 80
++ D ST+ + +Q++G + +R ++ R ER + A ++ +
Sbjct: 60 MIHDKGLSTDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDR 119
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + + + VA Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 120 MAAQMRL--PRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 177
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ E+G Y L + L + L+ P ++ +F D L K A++
Sbjct: 178 AVSKVTKKEIGRSYRFLARGLNLN-----LRPTSPIEYVDRFGDALNVSARTK--KRAKE 230
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHE 253
IL + IT+G+ P+GL AALYV++L G K ++ ++ E R KEL E
Sbjct: 231 ILREAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVE 290
Query: 254 GVAANLP 260
+ N+P
Sbjct: 291 KLNINVP 297
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 109/270 (40%), Gaps = 41/270 (15%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH--NFSTEA-------------------- 39
+ C C P L C CG +L+ +FS +
Sbjct: 41 IRCPRCGSKNVVEDPNTGDLVCQNCGLILDSSALDFSKDWRAFDSDEYIERAHAGAPITP 100
Query: 40 --------TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESD 91
T + G S+ S N ++ Q S+E+ +E A +R ++L + +
Sbjct: 101 LRPGFGLDTDIVLTKGASKKSVNLLKRAQKHAADSKEKTIEPALRKIRDAADSLVLPQ-- 158
Query: 92 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151
E + A Y +A KGR + + A+ +Y ACR+ P L + S + + E+G
Sbjct: 159 ETIEDAATLYRMAARAGLVKGRSMDAMVAAVIYAACRRTDVPKTLEEISKFFALEEKEIG 218
Query: 152 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWI 210
+ L + L I + P F++ +L LP ++V A I+ KR+
Sbjct: 219 RSFRFLFRKLGIQ-----IPPPKPENFVYLIASKLSLP---EEVATQAIRIIKIAKRNGA 270
Query: 211 TTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
T GR+P G+ AA+Y++ GL ++ ++
Sbjct: 271 TMGREPVGVAAAAVYMACQELGLHRTQREL 300
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D +V A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMGKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY ACR P L D +N +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYAACRNTETPRTLDDVANGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A +IL K + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAVEILEQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKD 278
Query: 240 I 240
I
Sbjct: 279 I 279
>gi|68164349|gb|AAY87166.1| hypothetical transcription initiation factor IIB-like protein
variant #2 [Sulfolobus islandicus]
Length = 187
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 20/197 (10%)
Query: 73 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+A +++ ++ N LN+ +S DE A Y AV + +GR E V A+ +Y ACR+
Sbjct: 2 QAMNELERIGNLLNLPKSVKDE----AALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 57
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 58 KLARTLDEIAQYTKANRKEVAXCYRLLLRELDVSVPVS-----DPKDYVTRIAN--LLGL 110
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------D 243
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I +
Sbjct: 111 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 170
Query: 244 FMARKKELHEGVAANLP 260
R KEL + + ++P
Sbjct: 171 VRNRYKELTQELKISIP 187
>gi|22035558|ref|NP_663718.1| transcription factor IIIB 90 kDa subunit isoform 3 [Homo sapiens]
gi|9909702|emb|CAC04513.1| transcription factor II B-related factor [Homo sapiens]
gi|119602313|gb|EAW81907.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|119602315|gb|EAW81909.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|119602318|gb|EAW81912.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
Length = 473
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 233 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 292
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 293 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 325
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 326 EQKKISSKINYSVLRGL 342
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 30/127 (23%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV- 49
Query: 257 ANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA 314
KV S + + L + +DT P + + +EFM I LE DPP++
Sbjct: 50 --------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEECDPPSYTAG 93
Query: 315 ERERMVK 321
+R+ +K
Sbjct: 94 QRKLRMK 100
>gi|426378227|ref|XP_004055844.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Gorilla
gorilla gorilla]
Length = 473
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 233 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 292
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 293 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 325
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 326 EQKKISSKINYSVLRGL 342
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 30/127 (23%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV- 49
Query: 257 ANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA 314
KV S + + L + +DT P + + +EFM I LE DPP++
Sbjct: 50 --------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEECDPPSYTAG 93
Query: 315 ERERMVK 321
+R+ +K
Sbjct: 94 QRKLRMK 100
>gi|48735267|gb|AAH71637.1| BRF1 protein, partial [Homo sapiens]
Length = 486
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 246 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 305
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 306 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 338
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 339 EQKKISSKINYSVLRGL 355
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 30/133 (22%)
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKE 250
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF KE
Sbjct: 9 NHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKE 57
Query: 251 LHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADP 308
+ V KV S + + L + +DT P + + +EFM I LE DP
Sbjct: 58 VISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEECDP 100
Query: 309 PAFQVAERERMVK 321
P++ +R+ +K
Sbjct: 101 PSYTAGQRKLRMK 113
>gi|20094057|ref|NP_613904.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|19887040|gb|AAM01834.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 341
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 86 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145
NI S IV A R Y AV ++ +GR E A+ L++AC+++ P + + + I
Sbjct: 127 NIPRS--IVDEAIRIYRKAVEKDLVRGRSIENTAAAALFMACKKRKHPRTIKEIAKLFGI 184
Query: 146 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
++ + L + L + + DP +L +F L G ++ V AR+IL
Sbjct: 185 TPKDINRTHRVLLRHL-----NERMPAPDPKQYLSRFATEL--GVSEDVEMLAREILEKA 237
Query: 206 KRDWITTGRKPSGLCGAALYVSAL 229
++ +T R P+GL GAALY++ L
Sbjct: 238 EKKGLTVSRNPAGLAGAALYLAGL 261
>gi|355778899|gb|EHH63935.1| hypothetical protein EGM_17013, partial [Macaca fascicularis]
Length = 316
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 88 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 147
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 148 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 180
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 181 EQKKISSKINYSVLRGL 197
>gi|253743265|gb|EES99717.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia intestinalis
ATCC 50581]
Length = 477
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 29/259 (11%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
+ C C + T +++ C CG V+ D + + ++ G S + GNF+ S
Sbjct: 3 ISCPFCFSNSTITDEGQAKVFCGNCGLVIMDTLIVNDLIY-QDQNGVSTVMGNFISANTS 61
Query: 62 EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
A+R ++ ++ + LN+ E+V A +Y + T+GRR + A+
Sbjct: 62 --SAARSLAIKHFSKELETIAMVLNLPM--ELVRKASDYYANCLRDKATRGRRNNLLAAA 117
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ--LCQV---LYIADESNVLKQVDPS 176
LY+ RQ + LLID+++ LN++V+ L Y+Q L Q L D ++L + S
Sbjct: 118 LLYIVGRQHNLSHLLIDYADALNVSVFTLNK-YIQPFLRQYNIKLPYQDLESLLPRFVDS 176
Query: 177 IFLHKFTDRL------LPGGNKKVCDT----------ARDILASMKRDWITTGRKPSGLC 220
I +FT + N + T ++ IL + I TGR PSGL
Sbjct: 177 ILKEEFTTVFQDNRDCMLFANIHIASTDQLREHTLAVSKYILKASIAINIHTGRLPSGLL 236
Query: 221 GAALYVS--ALTHGLKFSK 237
GA+++V+ L +G+ +
Sbjct: 237 GASIFVALKLLNYGIPIHR 255
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 9/160 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER +++AF ++R+M +AL G D I A Y AV + GR E + + LY A
Sbjct: 106 ERNLKQAFGEIRRMASAL--GLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAA 163
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + + Y L + L + ++ VDP ++ +F L
Sbjct: 164 RQHSTPRTLAELETVSRVKRLRIQRAYRYLSRELGLR-----MEPVDPLQYVPQFASEL- 217
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
+ + ARD+L + K + +GR P+GL A+Y +
Sbjct: 218 -NVSDEATRRARDLLTTAKAQGVHSGRSPAGLAAGAIYAA 256
>gi|338753412|ref|NP_001229718.1| transcription factor IIIB 90 kDa subunit isoform 7 [Homo sapiens]
Length = 439
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 199 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 258
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 259 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 291
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 292 EQKKISSKINYSVLRGL 308
>gi|355693619|gb|EHH28222.1| hypothetical protein EGK_18610, partial [Macaca mulatta]
Length = 316
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 88 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 147
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 148 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 180
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 181 EQKKISSKINYSVLRGL 197
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E + ++ LY ACR + P L + + + E+G Y + +
Sbjct: 142 LYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSYRFMAR 201
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L + L+ P ++ +F D L G + K A++IL + IT+G+ P+GL
Sbjct: 202 GLGLN-----LRPTSPIDYVDRFGDAL--GVSSKTKQRAKEILQEAIKRGITSGKGPTGL 254
Query: 220 CGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANLP 260
AALYV++L G K ++ ++ E R KEL E + +P
Sbjct: 255 AAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEKLNIKVP 302
>gi|193788404|dbj|BAG53298.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 199 DPKDASGDGGLDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 258
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 259 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 291
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 292 EQKKISSKINYSVLRGL 308
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 9/160 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER +++AF ++R+M +AL G D I A Y AV + GR E + + LY A
Sbjct: 153 ERNLKQAFGEIRRMASAL--GLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAA 210
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + + Y L + L + ++ VDP ++ +F L
Sbjct: 211 RQHSTPRTLAELETVSRVKRLRIQRAYRYLSRELGLR-----MEPVDPLQYVPQFASEL- 264
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
+ + ARD+L + K + +GR P+GL A+Y +
Sbjct: 265 -NVSDEATRRARDLLTTAKAQGVHSGRSPAGLAAGAIYAA 303
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E + ++ LY ACR + P L + + + E+G Y + +
Sbjct: 142 LYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSYRFMAR 201
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L + L+ P ++ +F D L G + K A++IL + IT+G+ P+GL
Sbjct: 202 GLGLN-----LRPTSPIDYVDRFGDAL--GVSSKTKQRAKEILQEAIKRGITSGKGPTGL 254
Query: 220 CGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAANLP 260
AALYV++L G K ++ ++ E R KEL E + +P
Sbjct: 255 AAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEKLNIKVP 302
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 9/182 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I+S +S +R + +A +++ ++ N L++ + + A Y AV + +GR E V
Sbjct: 114 IRSRIQSSIDRNLAQAMNELDRLSNQLHLNRA--VREEAAVIYRKAVEKGLVRGRSIESV 171
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y+ACR K P L + S + N E+ Y L + L + + DP +
Sbjct: 172 IAASVYVACRLKKLPRTLDEISLHTRANRKEIARCYRLLVKELQLK-----VPIADPIDY 226
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + L G K + A I+ K+ +T G+ P+GL AA+YV+ L K ++
Sbjct: 227 IPRMGSLLDLSG--KAMNIAARIVKIAKQKALTAGKDPAGLAAAAIYVATLLENEKRTQK 284
Query: 239 DI 240
+I
Sbjct: 285 EI 286
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G E+ A Y A++ + GR E V S LY
Sbjct: 134 SKERNLKQALGEIERMSSAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P + + +N I+ E Y + + L + + DP+ ++ +F
Sbjct: 192 AARQMQTPRSIDEVANVSRIDAMEFKRTYRYIVRELGLE-----VAPADPASYVPRFASE 246
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP +V AR++L + ++D +T+G+ P GL AA+Y ++L K ++S +
Sbjct: 247 LDLP---DEVERRARELLDNAQKDGVTSGKSPVGLAAAAIYAASLLTNHKVTQSQV 299
>gi|224035151|gb|ACN36651.1| unknown [Zea mays]
gi|413946303|gb|AFW78952.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 90
Score = 65.9 bits (159), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60
Query: 60 QSEYGASRERLMEKA 74
+S Y SR+R ++K
Sbjct: 61 ESGYSMSRQRTLDKG 75
>gi|68164351|gb|AAY87167.1| hypothetical transcription initiation factor IIB-like protein
variant #3 [Sulfolobus islandicus]
gi|68164353|gb|AAY87168.1| hypothetical transcription initiation factor IIB-like protein
variant #1 [Sulfolobus islandicus]
Length = 187
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 20/197 (10%)
Query: 73 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+A +++ ++ N LN+ +S DE A Y AV + +GR E V A+ +Y ACR+
Sbjct: 2 QAMNELERIGNLLNLPKSVKDE----AALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 57
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 58 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVS-----DPKDYVTRIAN--LLGL 110
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------D 243
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I +
Sbjct: 111 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 170
Query: 244 FMARKKELHEGVAANLP 260
R KEL + + ++P
Sbjct: 171 VRNRYKELTQELKISIP 187
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A +M +M +AL + +S VA Y A+ + +GR E V CLY AC
Sbjct: 201 ERNLQFALSEMDRMASALGVPKSTR--EVASVIYRRALNEDLIRGRSIEGVATGCLYAAC 258
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + ++ + E+G Y Y+A E ++ ++ VDP ++ +F L
Sbjct: 259 RQEGIPRSLDEVADVSRVPYQEIGRTY------RYVAKELSLEMRPVDPKEYVPRFASEL 312
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G ++V A D++ + + + +G+ P+G
Sbjct: 313 --GVPEEVEQKANDVIDTAAEEGLLSGKSPTGF 343
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S ER + +A +M +MK L++ +D ++ A Y A+ R KGR +
Sbjct: 107 RSQAHSSAERNLRQALSEMDKMKAKLSL--TDPVIEKAAYIYRKAIERKLVKGRSIHGLV 164
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y +CR L D +N +NI ++ Y + + L + + DP +
Sbjct: 165 AACIYASCRNTETSRTLDDIANGINIRRKDVARCYRLIFRELDLK-----IPVPDPVKGV 219
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+ + G +K A +IL K+ I G+ P G+ AALY++ ++ G
Sbjct: 220 SRIAS--IAGLGEKTKRKAINILNKAKKLGIVAGKDPMGIAAAALYLACISSG 270
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 106/227 (46%), Gaps = 25/227 (11%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQS-----QLSGNFVRTIQSEYGA--SRERLMEKAFDDMR 79
K+L D ST + K+A+G++ + + +R + A SR+R +++A ++
Sbjct: 87 KLLHDEGLSTSIGWSDKDASGRTLSPSQREKMSRLRVWDERFRATDSRDRNLKQALGEID 146
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E + + LY A RQ P L +F
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEF 204
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD--- 196
+ + Y L + L + + DP+ +L +F L ++ D
Sbjct: 205 EPISRVRRQKYARAYRYLARQLELG-----IAPADPAEYLPRFVSEL------ELSDDLE 253
Query: 197 -TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
AR++L+++K+ +G+ P+GL A+Y + L G + ++ ++ E
Sbjct: 254 RKARELLSAVKKTGQHSGKNPTGLAAGAIYAAGLLTGDRITQQEVAE 300
>gi|159111980|ref|XP_001706220.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
gi|29293103|gb|AAO72320.1| transcription factor IIB-related protein [Giardia intestinalis]
gi|157434314|gb|EDO78546.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
Length = 476
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 31/260 (11%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
+ C C + T +++ C CG V+ D + + ++ G S + GNF I +
Sbjct: 3 ISCPFCLSNSTITDEGQAKVFCGNCGLVIMDTLIVNDLIY-QDQNGVSTVMGNF---ISA 58
Query: 62 EYGASRERLMEKAFD-DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
++ L K F ++ + LN+ E+V A +Y + T+GRR + A
Sbjct: 59 NTSSTARSLAIKHFSKELETIAMILNLPM--ELVRKASDYYANCLRDKATRGRRNNLLAA 116
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ--LCQV---LYIADESNVLKQVDP 175
+ LY+ RQ + LLID+++ LN++V+ L Y+Q L Q L D ++L +
Sbjct: 117 ALLYIVGRQHNLSHLLIDYADALNVSVFTLNK-YIQPFLRQYNIKLPYQDLESLLPRFVD 175
Query: 176 SIFLHKFTD--------RLLPGGNKKVCDTARD--------ILASMKRDWITTGRKPSGL 219
SI +FT L + D R+ IL + I TGR PSGL
Sbjct: 176 SILKEEFTTAFQDNRDCMLFANIHITSVDQLREHTLVVSKYILKASTAINIHTGRLPSGL 235
Query: 220 CGAALYVS--ALTHGLKFSK 237
GA+++V+ L +G+ +
Sbjct: 236 LGASIFVALKLLNYGIPIHR 255
>gi|307192896|gb|EFN75924.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 483
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 29/132 (21%)
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELH 252
+V TA+ ++ MKRD I +GR+PSGLCGAAL ++A H S +DII + ++H
Sbjct: 15 EVSMTAQRVVKRMKRDSIHSGRRPSGLCGAALLIAARLHEFNRSPADII-----KIVKVH 69
Query: 253 EGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ 312
E S + + L + DT P + +EFMT+ LE DPPAF+
Sbjct: 70 E-------------STLRKRLMEFGDT--PSSA----LTLDEFMTVD--LEEEQDPPAFK 108
Query: 313 VA---ERERMVK 321
A +RER+ K
Sbjct: 109 TARKKDRERLQK 120
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 391 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 450
+DIDD E+D Y+ +E+E +YK +W+++N EYL
Sbjct: 239 INDIDDEELDSYILSEKESNYKSALWKKVNAEYL-------------------------- 272
Query: 451 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 510
+E + ++KR KN PA TA EA +ML +K++ S INY+
Sbjct: 273 ----VKEKEKEEKRLKETEEGKPEKKRRRTKKNKTPANTAGEAIEKMLQEKKICSLINYE 328
Query: 511 VLEKL 515
L L
Sbjct: 329 ALNIL 333
>gi|270010201|gb|EFA06649.1| hypothetical protein TcasGA2_TC009572 [Tribolium castaneum]
Length = 150
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTI 59
C SC P C CG VLE + E F + A G + G FV +
Sbjct: 7 CKSCGSSDIEVDPARGDAVCTNCGSVLEVNIIVAEVQFEEGAHGTNSAIGQFVSADSKGG 66
Query: 60 QSEYGAS---------RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
+++GAS RE + KA + + Q+ N L + + + A F+ +A+ RN T
Sbjct: 67 ATKFGASFHVGAGVESREMTLRKARNGITQLCNQLQLNQ--HCIDTACNFFKMALNRNLT 124
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLL 136
KGR+ V A+C+YL CR + +L
Sbjct: 125 KGRKNTHVHAACVYLTCRTEGTARIL 150
>gi|308162410|gb|EFO64809.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia P15]
Length = 476
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 31/260 (11%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
+ C C T +++ C CG V+ D + + ++ G S + GNF I +
Sbjct: 3 ISCPFCLSSSTITDEGQAKVFCGNCGLVIMDTLIVNDLIY-QDQNGVSTVMGNF---ISA 58
Query: 62 EYGASRERLMEKAFD-DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
++ L K F ++ + LN+ E+V A +Y + T+GRR + A
Sbjct: 59 NTSSTARSLAIKHFSKELETIAMILNLPM--ELVRKASDYYANCLRDKVTRGRRNNLLAA 116
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ--LCQV---LYIADESNVLKQVDP 175
+ LY+ RQ + LLID+++ LN++V+ L Y+Q L Q L D ++L +
Sbjct: 117 ALLYIVGRQHNLSHLLIDYADALNVSVFTLNK-YIQPFLRQYNIKLPYQDLESLLPRFVD 175
Query: 176 SIFLHKFTD--------RLLPGGNKKVCDTARD--------ILASMKRDWITTGRKPSGL 219
SI +FT L + D R+ IL + I TGR PSGL
Sbjct: 176 SILKEEFTATFQDNRDCMLFANIHITSVDQLREHTLVVSKYILKASTAINIHTGRLPSGL 235
Query: 220 CGAALYVS--ALTHGLKFSK 237
GA+++V+ L +G+ +
Sbjct: 236 LGASIFVALKLLNYGIPIHR 255
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATACLYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + I+ E+G Y + Q L + ++ DP +L +F L
Sbjct: 186 RQEGIPRTLEEVTEVARIDQKEIGRTYRYVAQELSLE-----IQPTDPKEYLPRFASDL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V AR+I+ + + +G+ PSG
Sbjct: 240 -ELSEEVIAKAREIIDTSAEQGLLSGKSPSGF 270
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 17/219 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A LS + TI+ S+ +R +AF ++ ++
Sbjct: 70 MHDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELDRL 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K L + SD ++ Y A+ + +GR + A+ LY ACR P L D SN
Sbjct: 130 KTKLAL--SDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLTDVSN 187
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+NI ++ Y L + L + + V+P + + + + G ++K A +I
Sbjct: 188 GINIKRKDIARCYRLLLRELDLK-----MPVVNPIKCVSRISS--IAGLSEKTKRKAVEI 240
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L + ++ G+ P GL AALY+S + +G ++ DI
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVINGENKTQKDI 279
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+++ +S +R + +A ++M +MK+ L + +D ++ A Y A+ + +GR +
Sbjct: 134 RTQAHSSADRNLRQALNEMDKMKDKLAL--ADAVIEKAAYIYRKAMEKKLVRGRSIHGLV 191
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY ACR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 192 AACLYAACRNTETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 246
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + N++ A IL K+ + G+ P G+ AALY++ + G S+ D
Sbjct: 247 SRIAS--IAELNERTKRRAITILDQAKKLGMVAGKDPMGIAAAALYLACIGSGEAKSQKD 304
Query: 240 I 240
I
Sbjct: 305 I 305
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I S + VA Y A++ + +GR E V CLY AC
Sbjct: 135 ERNLQSALSEIDRMSSALGIPRS--VREVASVVYRRALSEDLIRGRSIEGVATGCLYAAC 192
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP ++ +F L
Sbjct: 193 RQEGIPRSLEEVAEVSRVERKEIGRTYRYVAQELSLE-----LKPVDPQEYVPRFCSEL- 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V R+I+ + +G+ P+G
Sbjct: 247 -DLSEEVTAKTREIIQVTAEKGLLSGKSPTG 276
>gi|348546031|ref|XP_003460482.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like, partial
[Oreochromis niloticus]
Length = 605
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 26/145 (17%)
Query: 174 DPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
DP +++ +F L G +V TA ++ MKRDW+ TGR+PSGLCGAAL ++A H
Sbjct: 8 DPCLYIPRFAHMLEFGAKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLIAARMHM 67
Query: 233 LKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 292
+ S D+I K +++ + + + L + +D +
Sbjct: 68 FQRSVKDVI----GVVKIIYQAI-------------LRKRLTEFED------MPTSQLTI 104
Query: 293 EEFMTISEGLEGGADPPAFQVAERE 317
+EFM + LE DPP+F A++E
Sbjct: 105 DEFMKVD--LEQECDPPSFTAAQQE 127
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 77/188 (40%), Gaps = 45/188 (23%)
Query: 343 DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD------------- 389
D+ PE ES+G P S G+ + + T + SD S+
Sbjct: 229 DQEAVPEKESMG-PHRQAAYLTSIPGKLPSAASLSLQQTFQTSDTSESGGRVLGDYPQSE 287
Query: 390 --NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 447
+ DIDD ++D Y+ NE+E K +W + N EYL+EQ K+ K E +YK
Sbjct: 288 ELDLKDIDDQKIDKYILNEKEVQVKMELWIKQNPEYLKEQEEKQEQINKEKE--EGTYKE 345
Query: 448 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKI 507
+ + ++ TA EA +RML KK +SSKI
Sbjct: 346 KKKKSKKRDQIETL---------------------------TAGEAIKRMLEKKIISSKI 378
Query: 508 NYDVLEKL 515
NYDVL L
Sbjct: 379 NYDVLRDL 386
>gi|448386369|ref|ZP_21564495.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445655320|gb|ELZ08166.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 324
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER +++A ++ +M +AL + E A Y AV GR E + +CLY
Sbjct: 131 SRERNLKQALGEIERMASALGLPEP--CRETAGVIYRRAVEEELLPGRSIEAMATACLYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ+ P L+ F++ + + Y L L + ++ DP +L ++
Sbjct: 189 AARQQGTPRTLVAFASVSRVEKLPVQRAYRYLSSELGLK-----IEPADPIHYLPQYASE 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
L G + AR IL + K + +GR P+GL AA+Y
Sbjct: 244 L--GVGDETERLARKILEAAKDRDLHSGRSPAGLAAAAIY 281
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
+ D +T + A LS + TI+ S+ +R +AF ++ +
Sbjct: 70 TMHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELNR 129
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ L I SD ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 130 LKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVE 187
Query: 141 NYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
NI ++ Y L + L + D + ++ I + + T R
Sbjct: 188 QAANIKRKDIARCYRLLIKELDLKMPVTDSIQCVARIASRIGIAEKTKRY---------- 237
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
A ++L + + ++ G+ P GL AALY+S + +G ++ DI E
Sbjct: 238 -AVNVLKQAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAE 282
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 12/204 (5%)
Query: 42 VKNAAGQSQLSGNFVRTIQS--EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
++++ G+ +RT + + SRER +AF ++ + + L + ES + +A
Sbjct: 87 LRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPES--VRELAAS 144
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQLC 158
Y A +GR E V + ++ AC++ P + + L + + E+ Y L
Sbjct: 145 IYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEILRAYRVLQ 204
Query: 159 QVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+ L + K +PS L +F +L G ++ V A++I+ K IT G+ P+G
Sbjct: 205 RRLNLKQ-----KPTEPSDHLPRFASKL--GVSENVQAKAQEIIEKAKEKGITVGKGPAG 257
Query: 219 LCGAALYVSALTHGLKFSKSDIIE 242
+ AALY++++ G + ++ +I E
Sbjct: 258 VAAAALYIASILEGERRTQKEIAE 281
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 30 LEDHNFSTEATFV-KNAAG------QSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
+ D F+T + K+A+G ++QL ++ +S +R + +A +++ ++
Sbjct: 78 VHDMGFATSIDYADKDASGRRIIEKKAQLQKLRKWQARTRIQSSVDRNLAQALNELERIA 137
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
LN+ + A R Y +AV + +GR E V A+ +Y+ACR+ P L + + Y
Sbjct: 138 ELLNL--PTHVREEAARIYRMAVEKGLVRGRSIESVIAAAVYVACREARVPRSLDEITKY 195
Query: 143 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDIL 202
I E+ Y L + L I + VDP F+ + L G + ++ A +IL
Sbjct: 196 TRIPRKEIARCYRLLLRELGIK-----VTAVDPIDFIPRIAHAL--GLSGEIIKNATEIL 248
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
++ +T G+ P+GL AA+Y++A+T G K ++ ++
Sbjct: 249 NKVRNKGVTAGKDPAGLAAAAVYIAAITAGEKRTQKEV 286
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 22/202 (10%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M A N+ +++ A Y AV +N +GR E V A LY AC
Sbjct: 121 ERNLSQALQELERM--AFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTD 184
R + P L + ++ + E+G Y + + L + N++ PS ++ +F
Sbjct: 179 RITNVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCS 230
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-- 242
+L + + + A +IL + +T+G+ P+G+ AA+Y+++L G + ++ + E
Sbjct: 231 KLKLSMDTR--NKALEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVA 288
Query: 243 -----DFMARKKELHEGVAANL 259
R KEL E + N+
Sbjct: 289 GVTEVTIRNRYKELTEKLKLNV 310
>gi|296475327|tpg|DAA17442.1| TPA: BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Bos taurus]
Length = 493
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A +
Sbjct: 241 DGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQKEKEARIAKER------- 293
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 505
EL KE + K++ + + A TA EA +ML +K++SS
Sbjct: 294 -----------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISS 333
Query: 506 KINYDVLEKL 515
KINY VL L
Sbjct: 334 KINYSVLRGL 343
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 61/127 (48%), Gaps = 30/127 (23%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF KE+ V
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTVKEVISVV- 49
Query: 257 ANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA 314
KV S + + L + +DT + +EFM I LE DPP++
Sbjct: 50 --------KVCESTLRKRLTEFEDTPT------SQLTVDEFMKID--LEEECDPPSYTAG 93
Query: 315 ERERMVK 321
+R+ +K
Sbjct: 94 QRKLRLK 100
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 9/183 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ AS ++ + +A ++ +K+ L++ SD ++ A Y A+ + KGR +
Sbjct: 113 RSKVNASSDKNLRQALSELSTLKDKLSL--SDAVIEKASYIYRKALEKGLVKGRSISALI 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ LY ACR P L D S+ NI ++ Y L Q L + + VDP +
Sbjct: 171 AASLYAACRDTETPRTLKDVSDAGNIKKKDISRCYRILHQELELK-----MPVVDPVQCV 225
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + G +K A +L + + G+ P GL AALY+S + +G ++ D
Sbjct: 226 ARIASSI--GITEKTKRYAVKVLKDAQAHEESAGKDPMGLAAAALYLSCVKNGEDKTQRD 283
Query: 240 IIE 242
I E
Sbjct: 284 IAE 286
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 11/179 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++AC
Sbjct: 126 ERNLLAAFRDIGSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD-----ESNVLKQVDPSIFLHKF 182
RQ P + N +++ LG Y L Q +A +S P L ++
Sbjct: 184 RQAHVPRTFREICNLTHVSKKTLGQCYKALEQAFNLAPGASAHQSATAPSSGPENLLVRY 243
Query: 183 TDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ L LP + +C DI+ ++ I GR P + G A+Y + L G S DI
Sbjct: 244 CNHLDLPPNVQSICG---DIIVEARKHGIADGRSPVSIAGGAIYFTCLLLGKPKSARDI 299
>gi|224053717|ref|XP_002297944.1| predicted protein [Populus trichocarpa]
gi|118481931|gb|ABK92899.1| unknown [Populus trichocarpa]
gi|222845202|gb|EEE82749.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 47/139 (33%)
Query: 381 TTEASDGSDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKA 439
+T A++ S++ SDIDD E+ GYL HNE+E +K+ +WE MN++YL
Sbjct: 59 STAAANDSEDLSDIDDAEIAGYLLHNEKEMEFKRTLWEMMNKKYL--------------- 103
Query: 440 ALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLT 499
K Q K A + K P++ A++ +
Sbjct: 104 -------------------------------KGNQLKGARKVKKRTPSKKAIKIAGQTEN 132
Query: 500 KKRLSSKINYDVLEKLFDD 518
K R SSKINYDVL+KL DD
Sbjct: 133 KTRSSSKINYDVLKKLLDD 151
>gi|357508869|ref|XP_003624723.1| hypothetical protein MTR_7g086760 [Medicago truncatula]
gi|355499738|gb|AES80941.1| hypothetical protein MTR_7g086760 [Medicago truncatula]
Length = 315
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 380 ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 426
+T EA D S++FSDIDD EVDGYL NEEE+HY++ WE +EY EE
Sbjct: 145 STAEAQDESESFSDIDDEEVDGYLLNEEERHYRQKTWENQYQEYYEE 191
>gi|433591402|ref|YP_007280898.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332920|ref|ZP_21522140.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433306182|gb|AGB31994.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445624764|gb|ELY78139.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 324
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
+RER +++A ++ +M +AL + E A Y AV GR E + +CLY
Sbjct: 131 ARERNLKQALGEIERMASALGLPEP--CRETAGVIYRRAVEEELLPGRSIEAMATACLYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ+ P L+ F++ + + Y L L + ++ DP +L ++
Sbjct: 189 AARQQGTPRTLVAFASVSRVEKLPIQRAYRYLSSELGLK-----IEPADPIHYLPQYASE 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
L G + AR IL + K + +GR P+GL AA+Y
Sbjct: 244 L--GVGDETERLARKILEAAKDRDLHSGRSPAGLAAAAIY 281
>gi|332028619|gb|EGI68654.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 301
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 75/149 (50%), Gaps = 36/149 (24%)
Query: 178 FLHKFTDRLLPGGNKK--VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
F HK L G+K V TA ++ MKRD I +GR+PSGLCGAAL ++A H
Sbjct: 3 FAHK-----LEFGDKTHTVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLIAARLHEFSR 57
Query: 236 SKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 295
S +DII+ ++HE S + + L + DT A L +EF
Sbjct: 58 STADIIKIV-----KVHE-------------STLRKRLLEFGDTPSS-ALTL-----DEF 93
Query: 296 MTISEGLEGGADPPAFQVA---ERERMVK 321
MT++ LE DPPAF+ A +RER+ K
Sbjct: 94 MTVN--LEEEQDPPAFKAARKKDRERLQK 120
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+A + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALAEDLIRGRSIEGVATSTLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + ++ E+G Y + Q L + +K VDP ++ +F L
Sbjct: 189 RQEGIPRSLEEVAEVSRVDQKEIGRTYRYISQELGLE-----MKPVDPKQYVPRFCSDL- 242
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
G +++V A +I+ + + +G+ P+G
Sbjct: 243 -GVSEEVQSKANEIIDTTAEQGLLSGKSPTG 272
>gi|386874734|ref|ZP_10116960.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807357|gb|EIJ66750.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 29 VLEDHNFSTEATFVKNAAG-----QSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKN 83
+ D ST K+++G +++ N +RT + + + KAF + MK
Sbjct: 73 TMYDKGLSTVIGTNKDSSGNALSNKTKYEFNRLRTWDQRSKSRKTAALSKAFTLLHGMKT 132
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L G D +V A Y V+ T+GR + ++ LY ACR+ + P L D +N
Sbjct: 133 KL--GVPDNVVESAAYIYRKVVSAKLTRGRTMTSLISASLYAACRENNIPRTLDDIANAG 190
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
N+ L + + L + L Q D S F+ K ++ + +K A +IL
Sbjct: 191 NVERRILSRDLRTIIKKLGLN-----LNQYDTSSFISKISNNM--DLKEKTKRDAFEILK 243
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+++ IT G+ P A+LY+S + +G K S+
Sbjct: 244 RCEKEQITAGKHPVAQAAASLYISCIMNGEKISQ 277
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTE 116
+Q+ Y ER + +A ++ ++ + L + +S DE + V Y + KGR E
Sbjct: 139 VQTSY----ERNLVQATHELNRIAHQLGVPKSCMDEALAV----YKQVLKSGLVKGRSVE 190
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
+ A+CL++ACR + P L + S Y E+ + + + L I L DP
Sbjct: 191 AIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIARELRIR-----LPLSDPR 245
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
++ K ++L LPG + A +L K +T G+ P+GL AA+Y+++L G
Sbjct: 246 QYVPKIVEQLKLPGD---IAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIASLLKGEVR 302
Query: 236 SKSDI 240
++ +I
Sbjct: 303 TQKEI 307
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M + L+I +++ A Y AV +N +GR E V A +Y AC
Sbjct: 119 ERNLSQALQELERMTSNLSI--PNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAAC 176
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + ++ + E+G Y + + L + N++ P ++++F +L
Sbjct: 177 RITNVPRTLDEIASVTRVKKKEIGRTYRIMARYLKL----NIMPS-KPEDYVNRFCSKLR 231
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ A +IL + +T+G+ P+G+ AA+Y+++L G + ++ I E
Sbjct: 232 LSMEAR--KRAEEILKMAVDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAE 284
>gi|449500687|ref|XP_004161168.1| PREDICTED: uncharacterized protein LOC101224631 [Cucumis sativus]
Length = 111
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 26/107 (24%)
Query: 389 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 448
++ D+ D EV+ YL+N +E HYKKIIWE++N++YL++QAAK+
Sbjct: 27 EDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKK----------------- 69
Query: 449 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 495
Q L A+AV K K++Q R EA + PAQ TR
Sbjct: 70 -------QGLNVVGASAVVKKSKKRQ--RKTEAPINMPAQADTGTTR 107
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 136 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEGVATSALYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S +N E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 194 RKEGIPRSLEEISEVSRVNRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELT 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A DI+ + + +G+ P+G
Sbjct: 249 L--SEEVQSKANDIIETTAEKGLLSGKSPTG 277
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y ++A + +GR E V S LY AC
Sbjct: 132 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRSLAEDLIRGRSIEGVATSALYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S +N E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RKEGIPRSLEEISEVSRVNRKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELT 244
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A DI+ + + +G+ P+G
Sbjct: 245 L--SEEVQSKANDIIETTAEKGLLSGKSPTG 273
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 136 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEGVATSALYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S +N E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 194 RKEGIPRSLEEISEVSRVNRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELT 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A DI+ + + +G+ P+G
Sbjct: 249 L--SEEVQSKANDIIETTAEKGLLSGKSPTG 277
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 19/221 (8%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS--------EYGASRERLMEKAFDDMRQ 80
++ D ST + A + LSG R +Q S+ER +++A ++ +
Sbjct: 91 MMHDKGLSTNIGWQNKDAYGNSLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGEIER 150
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL G D + A Y A+ + GR E V S LY A RQ + P L + +
Sbjct: 151 MSSAL--GLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQANTPRSLDEVA 208
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTAR 199
N + E+ Y + + L + + DP+ ++ +F L LP +V AR
Sbjct: 209 NVSRVERDEIARTYRYVVRELGLE-----VAPTDPASYVPRFCSELDLP---DEVERRAR 260
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
++L + + IT+G+ P GL AA+Y ++L + ++S++
Sbjct: 261 ELLTAAEDAGITSGKSPVGLAAAAVYAASLLTNERITQSEV 301
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 25/225 (11%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A L+ + TI+ S+ +R +AF ++ ++
Sbjct: 68 MHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRL 127
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K+ L I SD ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 128 KDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQ 185
Query: 142 YLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
NI ++ Y L + L + D + ++ I + + T R
Sbjct: 186 AANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY----------- 234
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
A +L + + ++ G+ P GL AALY+S + +G ++ DI E
Sbjct: 235 AVKVLKKAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAE 279
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 25/225 (11%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A L+ + TI+ S+ +R +AF ++ ++
Sbjct: 68 MHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRL 127
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K+ L I SD ++ A Y A+ + +GR + AS LY ACR + P L D
Sbjct: 128 KDKLAI--SDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLKDVEE 185
Query: 142 YLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
NI ++ Y L + L + D + ++ I + + T R
Sbjct: 186 AANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY----------- 234
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
A +L + + ++ G+ P GL AALY+S + +G ++ DI E
Sbjct: 235 AVKVLKLAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAE 279
>gi|291236300|ref|XP_002738078.1| PREDICTED: BRF (transcription factor) homolog family member
(brf-1)-like [Saccoglossus kowalevskii]
Length = 534
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 66/148 (44%), Gaps = 37/148 (25%)
Query: 175 PSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
P +++ +F +L G V TA +++ MKRDW+ TGR+PSGLCGAAL VSA H
Sbjct: 11 PCLYIPRFAHKLEFGDKTHDVSMTALRLVSRMKRDWMHTGRRPSGLCGAALLVSARLHDF 70
Query: 234 KFSKSDIIE-----DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLC 288
++ +II D RK+ L + ++T
Sbjct: 71 NRTQKEIIRVVKVCDATLRKR-----------------------LTEFEETPS------S 101
Query: 289 RSCYEEFMTISEGLEGGADPPAFQVAER 316
R +EF I LE DPPAF A R
Sbjct: 102 RLTIDEFQKID--LEEEQDPPAFTNARR 127
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
DG + + IDD E++ ++ ++ E K IW + N EYL++Q KE +
Sbjct: 295 DGELDLTGIDDSELEKFILSDNEVELKTEIWMKENAEYLKQQKEKEEKEQRDRE------ 348
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 505
+ S+ E ++KR + + A TA EA +ML +K++SS
Sbjct: 349 --------------------LGISKPESKKKRKYKKRVPFQANTAGEAIEKMLQEKKISS 388
Query: 506 KINYDVLEKLFDDSVC 521
KINYDVL L +S C
Sbjct: 389 KINYDVLRDLNRESDC 404
>gi|124360449|gb|ABN08459.1| hypothetical protein MtrDRAFT_AC157472g6v2 [Medicago truncatula]
Length = 149
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 380 ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 426
+T EA D S++FSDIDD EVDGYL NEEE+HY++ WE +EY EE
Sbjct: 95 STAEAQDESESFSDIDDEEVDGYLLNEEERHYRQKTWENQYQEYYEE 141
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M + L+I +++ + Y AV +N +GR E V A +Y AC
Sbjct: 120 ERNLSQALQELERMASNLSI--PNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAAC 177
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + ++ + E+G Y + + L + N+L P ++++F +L
Sbjct: 178 RITNVPRTLDEIASVTRVKKKEIGRTYRIMARYLKL----NILPS-KPDDYVNRFCSKLR 232
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ A +IL + +T+G+ P+G+ AA+Y+++L G + ++ I E
Sbjct: 233 LSMEAR--KRAEEILKMAIDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAE 285
>gi|408403674|ref|YP_006861657.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364270|gb|AFU58000.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 269
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R + +AF ++ ++K+ L G SD ++ Y A R +GR + + LY+AC
Sbjct: 81 DRNLRQAFSELDRLKDKL--GVSDAVIEKTAYIYRKAQERGLVRGRTISAMVGAALYIAC 138
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R+ L D + NI +L +Y + L + + +DP + + +R
Sbjct: 139 RETGASRTLKDIAEIGNIKRKDLARIYRLVVMELDLK-----IPMIDPMKCIVRVANRAN 193
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L K+V A +I+ + + I+ G+ P GL + LY++ L G +++DI E
Sbjct: 194 LSERTKRV---AMNIMKGVTKSGISAGKDPMGLAASVLYLACLNTGESRTQTDIAE 246
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D +V A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K+ + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAVAILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKD 278
Query: 240 I 240
I
Sbjct: 279 I 279
>gi|294883444|ref|XP_002770943.1| hypothetical protein Pmar_PMAR003232 [Perkinsus marinus ATCC 50983]
gi|239874069|gb|EER02759.1| hypothetical protein Pmar_PMAR003232 [Perkinsus marinus ATCC 50983]
Length = 179
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 386 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 445
D ++ SD+ D E++GYL EE K IW + N+ YL E A ++ A K A + +
Sbjct: 67 DDEESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKKRAEDEAK 126
Query: 446 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RL 503
+N K +KR + GPA +ALEAT+ L+KK L
Sbjct: 127 RNG----------------------TYKPRKRPVHSTAMGPADSALEATQMALSKKARSL 164
Query: 504 SSKINYDVLEKLF 516
S+++N LE+LF
Sbjct: 165 SNRVNMSALEELF 177
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 11/200 (5%)
Query: 43 KNAAGQSQLSGNFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRF 100
K +G + S +RT S A S +R + +A ++M ++K+ L + +D +V A
Sbjct: 91 KPLSGSMKSSIERLRTWDSRTQAHSSADRNLRQALNEMDKLKDKLAL--ADVVVEKAAYI 148
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
Y A+ + +GR + A+CLY ACR P L D +N +NI ++ Y + +
Sbjct: 149 YRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDMANGINIRRKDVARCYRLIFRE 208
Query: 161 LYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 220
L + + VDP + + + ++K A IL K + G+ P G+
Sbjct: 209 LELK-----MPVVDPVKGVSRIAS--IADLSEKSKRKAIIILNKAKDVGMVAGKDPMGIA 261
Query: 221 GAALYVSALTHGLKFSKSDI 240
AALY+S ++ G S+ +I
Sbjct: 262 AAALYLSCISSGESKSQKEI 281
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
L DH ST A +LS + +Q + +R + A +++ +M
Sbjct: 70 LHDHGLSTVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRM 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
N LN+ +I A Y AV + +GR E V A+ +Y ACR +P L + +
Sbjct: 130 ANLLNL--PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAK 187
Query: 142 YLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
L +N E+ Y + + L IAD + + ++ ++ L G+ + +
Sbjct: 188 KLEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLR---------GD--IIEY 236
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
A I+ +K IT G+ P+G+ A +Y++ + G + ++ +I
Sbjct: 237 AMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEI 279
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A +M +M +AL G D + VA Y A+ + +GR E V S LY AC
Sbjct: 151 ERNLQFALSEMDRMASAL--GVPDSVREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 208
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 209 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASEL- 262
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + +G+ P+G
Sbjct: 263 -ELSKEVQSKANEIIDVSAEKGLLSGKSPTGF 293
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D ++ A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K+ + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKD 278
Query: 240 I 240
I
Sbjct: 279 I 279
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D ++ A Y A+ + +GR + +
Sbjct: 120 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLV 177
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 178 AACLYASCRNTETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 232
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K+ + G+ P G+ AALY++ ++ G S+ D
Sbjct: 233 SRIAS--IAELSEKSKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKD 290
Query: 240 I 240
I
Sbjct: 291 I 291
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D +V A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K+ + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAVVILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKD 278
Query: 240 I 240
I
Sbjct: 279 I 279
>gi|307188627|gb|EFN73337.1| Transcription factor IIIB 90 kDa subunit [Camponotus floridanus]
Length = 205
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 31/151 (20%)
Query: 173 VDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
+DP +++ KF +L G K V TA IL M +D I GR+PSGLCGAAL ++A H
Sbjct: 33 LDPCLYIEKFARKLEFGKETKAVARTATRILQRMNKDSIHIGRRPSGLCGAALLIAARLH 92
Query: 232 GLKFSKSDIIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSC 291
S +DII+ ++HE S + + L + DT A L
Sbjct: 93 EFNRSPADIIKIV-----KVHE-------------STLRKRLMEFGDTPSS-ALTL---- 129
Query: 292 YEEFMTISEGLEGGADPPAFQVA---ERERM 319
+EF T+ E DPPAF+ A +RER+
Sbjct: 130 -DEFETVDLEEE---DPPAFKAARKKDRERL 156
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 9/183 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ S +R + +A ++ ++K+ L++ SD ++ A Y A+ + +GR +
Sbjct: 113 RSKVHESADRNLRQALSELSRLKDKLSL--SDAVIEKAAYIYRKALEKGLVRGRSISALI 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
AS LY ACR P L D S+ NI ++ Y L + L + + VDP +
Sbjct: 171 ASALYAACRDTETPRTLKDVSDAGNIKKKDIARCYRLLHRELDLK-----MPVVDPIQCV 225
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +L G ++K A +L + + + G+ P GL AALY+S + + ++ D
Sbjct: 226 ARIASKL--GISEKTKRFAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVNNCENMTQRD 283
Query: 240 IIE 242
I E
Sbjct: 284 IAE 286
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATACLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + S+ + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RQEGIPRSLEEVSDVSRVEQKEIGRTYRYVAQELELK-----MEPVDPKQYVPRFASELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQSKANEIIDTTAEQGLLSGKSPTG 272
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATACLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + S+ + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RQEGIPRSLEEVSDVSRVEQKEIGRTYRYVAQELELK-----MEPVDPKQYVPRFASELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQSKANEIIDTTAEQGLLSGKSPTG 272
>gi|407465789|ref|YP_006776671.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048977|gb|AFS83729.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSG-----NFVRTIQSEYGASRERLMEKAFDDMRQMKN 83
+ D ST K++ G++ S N +RT + + + KAF + MK
Sbjct: 73 TMNDRGLSTVIGTNKDSTGKALSSKTKYEFNRLRTWDQRSKSRKTASLSKAFTLLHGMKT 132
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L I SD +V A Y V+ T+GR + ++ LY ACR+ + P L D ++
Sbjct: 133 KLGI--SDNVVENAAYIYRKVVSAKLTRGRTMASLISASLYAACRENNIPRTLDDIADAG 190
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
N+ L + + L + L Q D + F+ K ++ + +K A +IL
Sbjct: 191 NVERRILSRDLRTIIKKLGMN-----LNQYDTTSFISKISNNM--NLKEKTKRDAFEILR 243
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+++ IT G+ P A+LY+S + +G K S+
Sbjct: 244 RCEKEQITAGKHPVAQAAASLYISCIMNGEKISQ 277
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 11/155 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + +A +++ ++ + LN+ + A R Y AV R +GR E V A+ +YL
Sbjct: 123 SVERNLAQAMNELDRLADVLNL--PSYVKEEAARIYREAVDRGLVRGRSIESVIAAAIYL 180
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR+ P L + + + I E+ Y L + L I + DP+ ++ +
Sbjct: 181 ACREMKVPRSLDEITRHTRIGRKEIARCYRLLLRELRIK-----VSTTDPADYVPRIVHG 235
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L LPG K+ A +I+ + K +T G+ P+GL
Sbjct: 236 LGLPGQAVKL---AIEIINTAKEHGVTGGKDPAGL 267
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A +M +M +AL + S VA Y A+ + +GR E V CLY AC
Sbjct: 131 ERNLQFALSEMDRMASALGVPRSTR--EVASVIYRRALNEDLIRGRSIEGVATGCLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + ++ + E+G Y Y+A E ++ ++ VDP F+ +F L
Sbjct: 189 RQEGIPRSLDEVADVSRVPYQEIGRTY------RYVAKELSLEMRPVDPKEFVPRFASEL 242
Query: 187 -LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+P ++V A +I+ + + +G+ P+G
Sbjct: 243 DVP---EEVEQKANEIIDTSAEAGLLSGKSPTGF 273
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 17/219 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T + A LS + TI+ S+ +R +AF ++ ++
Sbjct: 70 IHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDRL 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K L + SD ++ Y A+ + +GR + A+ LY ACR P L D +N
Sbjct: 130 KTKLAL--SDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVAN 187
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+NI ++ Y L + L + + V+P + + + G ++K A +I
Sbjct: 188 SINIKRKDIARCYRLLLRELDLK-----MPVVNPVKCISRISSN--AGLSEKTKRKAIEI 240
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L + ++ G+ P GL AALY+S + +G ++ DI
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDI 279
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 17/219 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T + A LS + TI+ S+ +R +AF ++ ++
Sbjct: 70 IHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDRL 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K L + SD ++ Y A+ + +GR + A+ LY ACR P L D +N
Sbjct: 130 KTKLAL--SDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVAN 187
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+NI ++ Y L + L + + V+P + + + G ++K A +I
Sbjct: 188 SINIKRKDIARCYRLLLRELDLK-----MPVVNPVKCISRISSN--AGLSEKTKRKAIEI 240
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L + ++ G+ P GL AALY+S + +G ++ DI
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDI 279
>gi|18312777|ref|NP_559444.1| transcription initiation factor IIB [Pyrobaculum aerophilum str.
IM2]
gi|21363011|sp|Q8ZWS3.1|TF2B_PYRAE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|18160260|gb|AAL63626.1| transcription initiation factor IIB (TFIIB) [Pyrobaculum aerophilum
str. IM2]
Length = 333
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++A+ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSAMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPIL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>gi|171185160|ref|YP_001794079.1| transcription initiation factor IIB [Pyrobaculum neutrophilum
V24Sta]
gi|226703639|sp|B1YCX0.1|TF2B_THENV RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|170934372|gb|ACB39633.1| Transcription factor TFIIB cyclin-related [Pyrobaculum neutrophilum
V24Sta]
Length = 333
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP++
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPTL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I S + VA Y A+ + +GR E V +CLY AC
Sbjct: 132 ERNLQFALSEIDRMASALGIPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + ++ + E+G Y + Q L +A ++ VDP ++ +F L
Sbjct: 190 RREGIPRSLEEIADVSRVERKEIGRTYRYIAQELSLA-----MEPVDPKEYVPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
++ V A +I+ + + +G+ P+G
Sbjct: 244 -DSSETVQAKATEIIDTTAEQGLLSGKSPTGF 274
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V SCLY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATSCLYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + S+ + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 187 RQEGIPRSLEEVSDVSRVEQKEIGRTYRYVAQELKLK-----MEPVDPKQYVPRFASELE 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + +G+ P+G
Sbjct: 242 L--SEEVQSKANEIIDVTAEQGLLSGKSPTG 270
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 11/155 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + +A +++ ++ + LN+ + A R Y AV + +GR E + A+ +YL
Sbjct: 127 SVERNLAQAMNELDRLSDILNL--PSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYL 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR+ P L + + + +N E+ Y L + L+I + DP ++ +
Sbjct: 185 ACREMKVPRSLDEITRHTRVNRKEIARCYRLLLRELHIK-----VTTTDPVDYVPRIVHG 239
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L LPG K+ A +I+ K +T G+ P+GL
Sbjct: 240 LGLPGQAVKI---AIEIINKAKEQGVTGGKDPAGL 271
>gi|292654896|ref|YP_003534793.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291372806|gb|ADE05033.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 326
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 137 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAAC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 195 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + + +G+ P+G
Sbjct: 249 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGF 279
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S ER + +A +M ++K+ L + +D ++ A Y A+ R KGR +
Sbjct: 114 RSQAHSSAERNLRQALSEMDKLKDKLTL--TDNVIEKAAYIYRKAIERKLVKGRSIHGLV 171
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR P L D + +NI ++ Y + + L + + DP +
Sbjct: 172 AACIYAACRITETPRTLDDIAEGINIKRKDVARSYRIIFRELDLK-----IPVADPVKGV 226
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ L G + A +L K+ + G+ P G+ AALY++ ++ G ++ +
Sbjct: 227 SRIAS--LAGLGEATKRKALILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGNKTQKE 284
Query: 240 I 240
I
Sbjct: 285 I 285
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 13/202 (6%)
Query: 47 GQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
G S L+ R + ER + +AF D+ + ++ ++ I +AK+ Y +
Sbjct: 107 GGSGLARELQRAASRGSASRSERNLLQAFRDISSWCDQFSLPKT--ISDIAKQLYKRSDE 164
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
+G+ E V A+C+++ACR+ P + N +++ LG Y QL Q +
Sbjct: 165 EKLLRGKPLEAVIAACIFIACRKAHVPRTFREICNLTHVSKKVLGQCYKQLEQAFNLTPG 224
Query: 167 SNVLKQVD-------PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
++ +Q P L ++ + L LP + +C DI+ + I GR P
Sbjct: 225 ASADRQTSSATSSTGPEDLLVRYCNHLDLPPNVQPICS---DIIVKARDLGIALGRSPIS 281
Query: 219 LCGAALYVSALTHGLKFSKSDI 240
+ G A+Y + G S DI
Sbjct: 282 VAGGAIYFTCHLLGKPKSMKDI 303
>gi|47216765|emb|CAG03769.1| unnamed protein product [Tetraodon nigroviridis]
Length = 161
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------------S 66
C CG VLED+ +E FV+ G S G FV SE G S
Sbjct: 25 CTGCGSVLEDNVIVSEVEFVETGGGASHAVGRFV---SSEAGGAVMSFGDSHLGNIGAES 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + + +A + + + L + + + A FY +A+ ++ T+GR+ V A+C+Y+
Sbjct: 82 RAQTLARARNSINTLGVQLQM--NKHCLDTAFNFYKMALTKHLTRGRKASHVIAACIYMV 139
Query: 127 CRQKSKPFLL 136
CR + P +L
Sbjct: 140 CRTEGTPRIL 149
>gi|407463400|ref|YP_006774717.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407047022|gb|AFS81775.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 306
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Query: 54 NFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
N +RT + + + KAF + MK L I D +V A Y V+ T+GR
Sbjct: 103 NRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLGI--PDNVVENAAYIYRKIVSAKLTRGR 160
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
+ ++ LY +CR+ + P L D +N N+ L + + L + L Q
Sbjct: 161 TMASLISASLYASCRENNIPRTLDDIANAGNVERRILSRDLRTIIKKLGLN-----LNQY 215
Query: 174 DPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
D S F+ K ++ + +K A +IL +++ IT G+ P A+LY+S + +G
Sbjct: 216 DTSSFISKISNNM--NLKEKTKRGAFEILKLCEKEQITAGKHPVAQAAASLYISCIMNGE 273
Query: 234 KFSK 237
K S+
Sbjct: 274 KISQ 277
>gi|47213354|emb|CAF92977.1| unnamed protein product [Tetraodon nigroviridis]
Length = 165
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT------------IQSEYGA- 65
S +C D CG VLED+ +E FV+ + G S G FV + G
Sbjct: 22 SAVCTD-CGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPVKAPLLGSGFHTSVGKE 80
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SR + ++ ++ + + L + + + A F+ + V+++ T+GR+TE V A+CLYL
Sbjct: 81 SRAQTLQGGKRQIQHLGSQLQLNQ--HCLDTAFNFFKMVVSKHLTRGRKTEHVIAACLYL 138
Query: 126 ACRQKSKP 133
CR + P
Sbjct: 139 VCRTEGTP 146
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D ++ A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAIAILNQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKD 278
Query: 240 I 240
I
Sbjct: 279 I 279
>gi|448582204|ref|ZP_21645708.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448604362|ref|ZP_21657614.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448624090|ref|ZP_21670163.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445731852|gb|ELZ83435.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445744522|gb|ELZ95998.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445750057|gb|EMA01496.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 296
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 107 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAAC 164
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 165 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 218
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + + +G+ P+G
Sbjct: 219 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGF 249
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y L + L I L P ++ +F L G + +V A DI
Sbjct: 221 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIDI 273
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 274 IEQAMAKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 312
>gi|448292886|ref|ZP_21483207.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543300|ref|ZP_21624869.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550186|ref|ZP_21628709.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559542|ref|ZP_21633616.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572791|ref|ZP_21640552.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448597013|ref|ZP_21654151.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445571861|gb|ELY26404.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706844|gb|ELZ58717.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710932|gb|ELZ62727.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445711961|gb|ELZ63747.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445719563|gb|ELZ71242.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740894|gb|ELZ92399.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 296
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 107 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAAC 164
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 165 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 218
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + + +G+ P+G
Sbjct: 219 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGF 249
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 9/173 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S ER + +A +M ++K+ L + +D ++ A Y A+ R KGR +
Sbjct: 114 RSQAHSSSERNLRQALSEMDKLKDKLTL--TDTVIEKAAYIYRKAIERKLVKGRSIHGLV 171
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y +CR P L D + +NI ++ Y + + L + + DP +
Sbjct: 172 AACIYASCRMTETPRTLDDIAEGINIKRKDVARSYRIIFRELDLK-----IPVADPVKGV 226
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+ L G + A +L K+ + G+ P G+ AALY++ ++ G
Sbjct: 227 SRIAS--LAGLGEATKRKALILLNKAKKIGMVAGKDPMGIAAAALYLACISTG 277
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+++ +S +R + +A ++M ++K+ L + +D +V A Y A+ + +GR + +
Sbjct: 108 RTQAHSSADRNLRQALNEMDKLKDKLAL--TDSVVEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAIVILNQAKEIGMVAGKDPMGIAAAALYLACISTGETKSQKD 278
Query: 240 I 240
I
Sbjct: 279 I 279
>gi|448447532|ref|ZP_21591095.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
gi|445815444|gb|EMA65368.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
Length = 308
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 25/243 (10%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H RPYD + C+R G L D STE +A G ++LSG
Sbjct: 54 HGPEWRPYDDE-GCERTGAPLTAARHDRGLSTEIGRGTDAKG-NELSGQKRRRLARMRRE 111
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ER + ++R++ +AL + SD + A + + A + +GR E
Sbjct: 112 QTRGRWRSKAERNLAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEA 169
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR + L+ D S + + Y L + L + E V PS+
Sbjct: 170 IAAASIYGACRCNGRSRLVDDVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSM 224
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 225 FVPRLASDLECP---DEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGHEEGRWLT 281
Query: 237 KSD 239
+S+
Sbjct: 282 QSE 284
>gi|167044706|gb|ABZ09376.1| putative transcription factor TFIIB repeat protein [uncultured
marine microorganism HF4000_APKG7N23]
Length = 242
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 13/177 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S +R + +A +++ ++ A IG ++ A Y AV N +GR E V A+ LY
Sbjct: 49 SADRNLAQALNELNRL--ASKIGLHRQVREEAAMLYRRAVQDNLVRGRSVEGVAAAALYG 106
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
ACR+ P L + + + E+G Y YI+ E + L+ P++++ +F
Sbjct: 107 ACRRCEVPRTLSEITEASRASKKEVGRTY------RYISRELKLNLQPASPAVYIIRFCR 160
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LPG V A +IL +T+GR P+G+ AA+Y++++ + + ++ I
Sbjct: 161 ELELPG---YVESAAINILNQAIEAELTSGRGPTGVAAAAIYIASVVYDQRKTQKTI 214
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A +M +M +AL G VA Y A+ + +GR E V SCLY AC
Sbjct: 131 ERNLQFALSEMDRMASAL--GAPRSTREVASVLYRRALNEDLIRGRSIEAVSTSCLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RMEGIPRSLDEVTEVARVPYKEIGRTYRYIAQELKLE-----MQPVDPKEYVPRFASEL- 242
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G +++V A +I+ + +G+ P+G
Sbjct: 243 -GVSEEVKQKANEIIDVSAEQGLLSGKSPTGF 273
>gi|399578968|ref|ZP_10772712.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399235994|gb|EJN56934.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 29/250 (11%)
Query: 23 CDRCGKVL----EDHNFSTEA---TFVKNAAGQSQLSGNFVRTIQSEYGASR-----ERL 70
C+R G L D STE T +N A SQ R ++ E+ R ER
Sbjct: 68 CERTGAPLTAARHDRGLSTEIGCRTDARNNALSSQKRRQLAR-MRREHSRGRFQSKAERN 126
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ ++R++ +AL G +D I A + + A N GR E + A+ +Y CR
Sbjct: 127 LAHGLGEVRRITSAL--GLADSIREQACQLFRSAQRENLLLGRSIEAIAAASVYGVCRCH 184
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
+P D + ++ + Y L + L + + V P + K L
Sbjct: 185 GRPITRDDLVDVARVDHSGVTNAYKTLNRELGLPTQP-----VAPQSLIPKLASEL--DV 237
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------D 243
K+V AR + IT G +PSG+ A LY+++ HG +++ + E
Sbjct: 238 EKRVRRRARTLAERAHETSITNGYQPSGVAAACLYLASREHGESLTQTQVAEAAGTTSAT 297
Query: 244 FMARKKELHE 253
AR+ EL E
Sbjct: 298 LRARRAELTE 307
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 138 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 195
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + +K VDP ++ +F+ L
Sbjct: 196 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFSSEL- 249
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+K+V A +I+ + + +G+ P+G
Sbjct: 250 -DLSKEVQSKANEIIETTAEKGLLSGKSPTG 279
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 20/231 (8%)
Query: 23 CDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKA---- 74
C R G L D STE +A G S R + SR R KA
Sbjct: 66 CKRTGAPLTAARHDRGLSTEIGRRTDANGNELSSQKQRRLWRLRREQSRGRFQSKAERNL 125
Query: 75 ---FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
++R++ +AL + E+ + A R + A +F +GR E + A+ +Y ACR
Sbjct: 126 AHGLGEVRRISSALELSET--LRDQACRLFRSAQNEDFLRGRSIEAMAAASIYGACRCNG 183
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
+P L + ++ + + Y L L + + V PS F+ + L +
Sbjct: 184 RPRTLNEVTDSARVEDSRITNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVS 236
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
++ AR + + + TTG +PSG A LY + G + ++SD+ E
Sbjct: 237 DQLRQRARRLAEASEATGATTGVRPSGFAAACLYKAGREQGRRLTQSDVAE 287
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 130 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 188 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASEL- 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G +++V A +I+ + +G+ P+G
Sbjct: 242 -GLSEEVQSKATEIIDVSAEQGLLSGKSPTGF 272
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L I SD ++ A Y A+ + +GR + AS LY AC
Sbjct: 116 DRNYRQAFSELNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFT 183
R + P L D NI ++ Y L + L + D + ++ I + + T
Sbjct: 174 RDTATPRNLKDVEEAANIKRKDIARCYRLLVKELDLRMPVTDSIQCVARISSHIGIAEKT 233
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
R A +L ++ ++ G+ P GL AALY+S + +G ++ DI
Sbjct: 234 KRY-----------AVVVLKEAQKHEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDI 279
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G +++V A +I+ + +G+ P+G
Sbjct: 241 -GLSEEVQAKATEIIDVSAEQGLLSGKSPTGF 271
>gi|357622232|gb|EHJ73796.1| TFIIB-related factor [Danaus plexippus]
Length = 458
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 34/148 (22%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
TA ++ MKRD I +GR+PSG+CGAAL ++A H + +D++ R ++HE
Sbjct: 2 TALRLVQRMKRDSIHSGRRPSGVCGAALLIAARLHDFSRTPTDVV-----RIVKIHE--- 53
Query: 257 ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAER 316
+ + + L + +T + L +EFMT+ LE DPPAF++A R
Sbjct: 54 ----------TTLRKRLLEFGETP---SSAL---TLDEFMTVD--LEEEQDPPAFKIARR 95
Query: 317 ---ERMVKASAEEN-----SSFERESDS 336
+R+ K EE+ + +RE D+
Sbjct: 96 RDKDRLQKLMEEEDGERELTELQREIDA 123
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 399 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 458
+D + +EE +K ++W +N YL+EQ KE E K EG
Sbjct: 237 LDSLIMTDEEARHKTLLWHNINAGYLKEQKIKE----------EIRAKEREEG------- 279
Query: 459 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
K+K+ + + + K + TA EA +ML +K++SSKINYD+L+ L
Sbjct: 280 ----------KDKKKKTRGSYKKKVAITGATAGEAVGKMLAEKKMSSKINYDILKSL 326
>gi|118431874|ref|NP_148613.2| transcription initiation factor IIB [Aeropyrum pernix K1]
gi|152031706|sp|Q9Y942.2|TF2B_AERPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116063196|dbj|BAA81458.2| transcription initiation factor IIB [Aeropyrum pernix K1]
Length = 322
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
A +G + +V A + Y A+ + T+GR E + A+ LY A R P L D +
Sbjct: 131 ASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAM 190
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
NV + L + D + + P F++ L G + V A I+
Sbjct: 191 KGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYTIISAL--GLPEHVAIEAIKIID 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
++ +T G+ P GL GAA+Y++AL HG++ ++ +I
Sbjct: 249 LSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEI 285
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACRQ P L + +
Sbjct: 85 RDSSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVVAASLYAACRQCKVPRTLDEIAE 144
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L+I L P ++ +F L G + +V + +I
Sbjct: 145 VSRVSKKEVGRTYRFLTRELHIK-----LPPTSPVDYVPRFASEL--GLSGEVQSRSIEI 197
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 198 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 236
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 136 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + + + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 194 RKEGIPRSLEEIAEVSRVERKEIGRTYRYVSQELGLE-----MRPVDPKKYVPRFSSEL- 247
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+K+V A +I+ + + +G+ P+G
Sbjct: 248 -DLSKEVQSKANEIIETTAEQGLLSGKSPTG 277
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 145 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 202
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + +K VDP ++ +F+ L
Sbjct: 203 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFSSELE 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+K+V A +I+ + + +G+ P+G
Sbjct: 258 L--SKEVQSKANEIIETTAEKGLLSGKSPTG 286
>gi|349805805|gb|AEQ18375.1| putative brf1 subunit of rna polymerase iii transcription
initiation factor iiib [Hymenochirus curtipes]
Length = 101
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNF 109
L G F ++ E SR + ++ RQ+ N + + + + A F+ +AV+++
Sbjct: 7 LGGGFHTSVGKE---SRAQTLQNG---KRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHL 60
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150
T+GR+ V A+CLYL CR + P +L+D S+ L +NVY L
Sbjct: 61 TRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVL 101
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 134 ERNLQFALSEIDRMSSALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATAALYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + L+ VDP ++ +F L
Sbjct: 192 RQEGIPRSLDEVADVARVEQKEIGRTYRYIAQELSLG-----LEPVDPVQYVPRFCSEL- 245
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
G +++V R+I+ + +G+ P+G
Sbjct: 246 -GLSEEVEQKTREIIEVTAEKGMLSGKSPTG 275
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y ++A + +GR E V S LY AC
Sbjct: 116 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRSLADDLIRGRSIEGVATSALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 174 RKEGIPRSLEEISEVSRVERKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELT 228
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A DI+ + + + +G+ P+G
Sbjct: 229 L--SEEVQAKANDIIETTAEEGLLSGKSPTG 257
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G +++V A +I+ + +G+ P+G
Sbjct: 241 -GLSEEVQAKATEIIDVSAEQGLLSGKSPTGF 271
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 136 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + + + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 194 RKEGIPRSLEEIAEVSRVERKEIGRTYRYVSQELGLE-----MRPVDPKKYVPRFSSEL- 247
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+K+V A +I+ + + +G+ P+G
Sbjct: 248 -DLSKEVQSKANEIIETTAEQGLLSGKSPTG 277
>gi|389846162|ref|YP_006348401.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616218|ref|ZP_21664928.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243468|gb|AFK18414.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750873|gb|EMA02310.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 326
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 137 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 195 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + + +G+ P+G
Sbjct: 249 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGF 279
>gi|448613430|ref|ZP_21663310.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740327|gb|ELZ91833.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 326
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 137 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 195 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + + +G+ P+G
Sbjct: 249 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGF 279
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 17/219 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSG------NFVRTIQSEYGASR--ERLMEKAFDDMRQM 81
+ D +TE + A LS N +RT Q + ER ++ A ++ +M
Sbjct: 90 MHDKGLTTEIGWRDKDANGHSLSNEKRKQMNRLRTWQQRIRTNDAGERNLQFALSEIDRM 149
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+AL G D + +A Y A+ + +GR E V L+ A R ++ P L + S+
Sbjct: 150 VSAL--GAPDNVQEMASVIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIPRTLEEVSD 207
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ +G Y L Q L + + DPS ++ ++ L + V A +I
Sbjct: 208 VARVDHNRVGRAYRHLSQELGLE-----VSPTDPSQYVPRYCSAL--DVSSLVEQKATEI 260
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+A + + G+ PSG +A+Y++++ G K +++D+
Sbjct: 261 VADTTEEGLHAGKSPSGFAASAVYLASMLCGEKETQADV 299
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 19/200 (9%)
Query: 33 HNFSTEATFVKNAAGQSQLSGN------FVRTIQSEYGASRERLMEKAFDDMRQMKNALN 86
H+ K + ++SGN +R S++R + A ++ M + LN
Sbjct: 118 HDMGVSTEIGKGSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISNLN 177
Query: 87 IGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145
+ ES VH R Y AV + +GR E + ++ +Y+ R++ P L + S+ I
Sbjct: 178 LPES---VHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTLDEISDASGI 234
Query: 146 NVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILAS 204
E+G Y Y+A E + + P ++ +F +L G +V AR+IL
Sbjct: 235 EKREIGRAY------RYVARELGLRILPAKPQDYVPRFAGKLQLSG--EVQARARNILKE 286
Query: 205 MKRDWITTGRKPSGLCGAAL 224
+ + +G+ P+GL AAL
Sbjct: 287 ARERDLLSGKGPTGLAAAAL 306
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 101/258 (39%), Gaps = 52/258 (20%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLED------------------------------- 32
C C H P +L C+ CG VL D
Sbjct: 21 CPDCETETVVHDPDRRELVCEECGLVLSDEPIDYGPEWRAFDAREHEELSRVGAPLTQSM 80
Query: 33 HNFSTEATF---VKNAAGQSQLSGNF-----VRTIQSEYGASR--ERLMEKAFDDMRQMK 82
H+ T ++A G S +G +R Q ER ++ A ++ +M
Sbjct: 81 HDRGLTTTIDWRNRDANGHSMDAGKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMV 140
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
+AL + + + A Y A+ R+ +GR E V S LY++CR+ P L + +
Sbjct: 141 SALGVPKP--VKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKDDIPRSLEEVTAV 198
Query: 143 LNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y YIADE ++ L+ +P F+ +F L + +V TA DI
Sbjct: 199 SRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--DVSSEVETTAIDI 250
Query: 202 LASMKRDWITTGRKPSGL 219
+ + +G+ P+G
Sbjct: 251 IDETTELGLHSGKSPTGF 268
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 173 IYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTY----- 227
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 228 -RFLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 283
Query: 218 GLCGAALYVSALTHGLKFSKSDIIE 242
G+ AA+Y++++ G + ++ ++ E
Sbjct: 284 GVAAAAIYIASVLLGCRRTQREVAE 308
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 130 ERNLQFALSEIDRMSSALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATAALYAAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + L+ VDP ++ +F L
Sbjct: 188 RQEGIPRSLDEVAEVARVEQKEIGRTYRYIAQELSLG-----LEPVDPVQYVPRFCSEL- 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
G +++V R+I+ + +G+ P+G
Sbjct: 242 -GLSEEVEQKTREIIEVTAEKGMLSGKSPTG 271
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 116 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 174 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 227
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G +++V A +I+ + +G+ P+G
Sbjct: 228 -GLSEEVQAKATEIIDVSAEQGLLSGKSPTGF 258
>gi|169599398|ref|XP_001793122.1| hypothetical protein SNOG_02518 [Phaeosphaeria nodorum SN15]
gi|160704598|gb|EAT90730.2| hypothetical protein SNOG_02518 [Phaeosphaeria nodorum SN15]
Length = 348
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLH 180
A RQ +L+D + + +NV+ LG Y + L D + ++ ++++P +
Sbjct: 3 ARRQTEITLMLMDLAEKIQVNVWALGDTYKSFLKKLGENDPAQLVGNTAVQEIEP--LML 60
Query: 181 KFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
K+ +L G + +V A IL MKRDW+ GR+P+GLCGA + ++A + +
Sbjct: 61 KYCRKLEFGDDSFRVAADACKILKRMKRDWMVQGRQPAGLCGACIILAARMNNFR 115
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 13/181 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++AC
Sbjct: 130 ERNLLTAFRDIGGWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES-------NVLKQVDPSIFLH 180
RQ P + N N++ LG Y L Q + S + P L
Sbjct: 188 RQAHVPRTFREICNLTNVSKKTLGQCYKALEQAFNLTPGSGSGGASIHPSPSTGPENLLV 247
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
++ + L LP + +C DI+ + ++ I GR P + G A+Y + G S D
Sbjct: 248 RYCNHLDLPANVQSICG---DIIVAARKHGIADGRSPVSIAGGAIYFTCHLLGKAKSARD 304
Query: 240 I 240
I
Sbjct: 305 I 305
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + +A +++ ++ + LN+ + A R Y AV + +GR E + A+ +YL
Sbjct: 127 SVERNLAQAMNELDRLSDILNL--PSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYL 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR+ P L + + + +N E+ Y L + L I + DP ++ +
Sbjct: 185 ACREMKVPRSLDEITRHTRVNRKEIARCYRLLLRELRIK-----VATTDPVDYVPRIVHG 239
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L LPG K+ A +I+ K +T G+ P+GL
Sbjct: 240 LGLPGQAVKI---AIEIINKAKEQGVTGGKDPAGL 271
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G D + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSAL--GVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTSVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 238 DVG--KDVETKAVEIIDETTEQGLHSGKSPTGF 268
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 132 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 190 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELE 244
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 245 --LSEEVQSKANEIIETTAEKGLLSGKSPTG 273
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y ++A + +GR E V S LY AC
Sbjct: 116 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRSLADDLIRGRSIEGVATSALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 174 RKEGIPRSLEEISEVSRVERKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELT 228
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A DI+ + + + +G+ P+G
Sbjct: 229 L--SEEVQAKANDIIETTADEGLLSGKSPTG 257
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ + +T+GR P+G+ AALY++++ G ++ D+ E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAE 284
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 26/246 (10%)
Query: 30 LEDHNFSTEAT------FVKNAAGQSQLSGNFVRTIQSEYGASR--ERLMEKAFDDMRQM 81
+ D STE + + KN +S+ +R Q S ER + +A ++ +M
Sbjct: 75 IHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELERM 134
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N+G ++ A Y AV N +GR E V A+ +Y ACR P L + S
Sbjct: 135 SS--NLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIST 192
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
I E+G VY + + L + + P ++ +F +L G +V A +I
Sbjct: 193 VTRIKKREIGRVYRIMSRTLKLN-----IYPTKPEDYIDRFCSKLKLSG--EVKKKAYEI 245
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEG 254
+ + I +GR P+G+ AA+Y++A+ G + ++ ++ E R KEL E
Sbjct: 246 IKMARERDIISGRGPTGVAAAAIYIAAILMGERRTQREVAEVAGVTEVTIRNRYKELAEK 305
Query: 255 VAANLP 260
+ NLP
Sbjct: 306 L--NLP 309
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 125 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAAC 182
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 183 RQEDIPRSLEEVSEVSRVEQKEIGRTYRYVAQELSLK-----MEPVDPKQYVPRFVSELE 237
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + +G+ P+G
Sbjct: 238 L--SEEVQAKANEIIDVTAEKGLLSGKSPTG 266
>gi|408403989|ref|YP_006861972.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364585|gb|AFU58315.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 285
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 17/221 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A LS + TI+ S+ +R +AF ++ ++
Sbjct: 52 MHDMGLATIIGPVDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRL 111
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K+ L +G D ++ A Y A+ + +GR + A+ LY ACR P L D +N
Sbjct: 112 KDKLAVG--DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDIAN 169
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
NI ++ Y L + L + + VDP + + + G ++K A +I
Sbjct: 170 ASNIKKKDVARCYRLLIRELDLK-----MPVVDPVKCVARIASK--AGLSEKTKRKALEI 222
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L + I+ G+ P GL AALYV+ + +G ++ D+ E
Sbjct: 223 LKKAEEGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAE 263
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 26/249 (10%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALN-- 86
+L D ST+ + S +SG+ I R + A D R + AL+
Sbjct: 68 MLHDKGLSTDIDWRNKDIHGSDISGSIRTKIYRLRMWQRRMRISDAID--RNLAFALSEL 125
Query: 87 ------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+G I +A Y AV +GR E + ++CLY ACR + P L +
Sbjct: 126 DRMGSQLGLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIE 185
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ ++ E+G Y Y+A E N+ LK P ++ +F D+L G ++K A
Sbjct: 186 DVSKVDKKEIGRSY------RYLARELNLRLKPTSPIDYVIRFGDQL--GISEKTKRRAV 237
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELH 252
IL +T+G+ P+G+ AA+Y+++L G K ++ ++ E R KEL
Sbjct: 238 KILNQAIEKGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKELV 297
Query: 253 EGVAANLPN 261
+ + +P
Sbjct: 298 DKLNIRIPT 306
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 146 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 205
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 206 VSRVGKKEVGRTYRFLTRELNIK-----LPPTSPVDYIPRFASELNLSG--EVQSKAIEI 258
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEG 254
+ + +T+G+ P+G+ AALY++++ G + ++ D+ E R KEL E
Sbjct: 259 INNAMAKGLTSGKGPTGVAAAALYIASVLLGERKTQRDVAEVAGVTEVTIRNRYKELSEE 318
Query: 255 VAANL 259
+ L
Sbjct: 319 IEMGL 323
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ ++ + LN+ + + A Y AV + +GR E+V A+ LY AC
Sbjct: 116 ERNLAFALSELDRIASRLNLPRT--VRETASVIYRDAVKKKLIRGRSIEEVVAAALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R+ + P L + + + +G Y L + L I L P ++ +F L
Sbjct: 174 RKCNVPRTLDEIAEVSGVKKKGVGRTYRFLARKLNIR-----LPPTSPIDYVPRFASEL- 227
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G + KV A +I+ + +T+GR P+G+ AALY++++ + ++ +I E
Sbjct: 228 -GLSGKVQSKAIEIIKKAMKKGLTSGRGPTGVAAAALYIASVLLRERRTQREIAE 281
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 10/198 (5%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R ER + AF D+ + ++ ++ I +AK+
Sbjct: 99 TVISFRDGGSGIARELQRAASRSQNNRSERNLLTAFRDISNWCDQFSLPKT--ISDIAKQ 156
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y A +G+ E V A+C+++ACR+ P + N ++ LG Y L Q
Sbjct: 157 LYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFREICNLTRVSKKMLGQCYKALEQ 216
Query: 160 VLYIADESNV----LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGR 214
L ++ ++ P L ++ + L LP + +C +I+ + + I GR
Sbjct: 217 SLNLSGPESMPLANTPTTGPEKLLVRYCNHLDLPANVQAICS---EIIVNARNHGIADGR 273
Query: 215 KPSGLCGAALYVSALTHG 232
P + G A+Y + L G
Sbjct: 274 SPISIAGGAIYFTCLLLG 291
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ ++ + L G + A Y AV + +GR E V A+ +Y AC
Sbjct: 129 ERNLAFALSELDRIASKL--GLPKHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R+ P L + + ++ E+G Y L + L I L +P ++ +F L
Sbjct: 187 RKYRVPRTLDEIAEVSRVDKKEIGRTYRFLARELKIK-----LAPTNPIDYVPRFASELG 241
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
LPG +V A IL +T+GR P+G+ AA+Y++++ G + ++ ++ E
Sbjct: 242 LPG---EVESKAIQILKKAAEKGLTSGRGPTGVAAAAIYIASVLLGHRRTQREVAE 294
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + V+ Y A+ + +GR E V SCLY C
Sbjct: 133 ERNLQFALSEIDRMASALGVPRS--VREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGC 190
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + + + E+G Y Y+A E + +K VDP ++ +F L
Sbjct: 191 RQEGIPRSLEEVAEVSRVEKKEIGRTY------RYVAKELGLEMKPVDPKEYVPRFCSDL 244
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ E
Sbjct: 245 --EASEEVEMKATEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAE 298
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 140 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVSTSALYAAC 197
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 198 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL- 251
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+K+V A +I+ + + +G+ P+G
Sbjct: 252 -DLSKEVQSKADEIIETTAEQGLLSGKSPTG 281
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
GA ER ++ AF ++ M ++ ++ +S I +AK+ Y A + + + V A+C+
Sbjct: 124 GARSERSIQTAFREISNMCDSFSLPKS--ISDIAKQLYKRADEEKLLRAKSLDAVIAACI 181
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-------VLKQVDPS 176
++ACRQ P + + +G Y L Q +A +N ++ P
Sbjct: 182 FIACRQAQVPRTFREICELTRVPKKIIGQCYKTLEQAFNLAPGANGSTNDRGIVAGTGPE 241
Query: 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
L ++ + L G + A DI+ + I GR P + GAA++ + H L +
Sbjct: 242 DLLVRYCNHL--GLPPNIQSYASDIIVEARNQGIAAGRSPVSIAGAAIFFTC--HLLDQT 297
Query: 237 KS 238
KS
Sbjct: 298 KS 299
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y L +
Sbjct: 170 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLAR 229
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 230 ELGIK-----LTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPTG 281
Query: 219 LCGAALYVSALTHGLKFSKSDIIE 242
+ AA+Y++++ G + ++ ++ E
Sbjct: 282 VAAAAIYIASVLLGCRRTQREVAE 305
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 134 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 192 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELE 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
++V A +I+ + + + +G+ P+G
Sbjct: 247 L--TEEVQSKANEIIETTAEEGLLSGKSPTG 275
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVSTASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + N + E+ Y Y+ E N+ +K DP+ ++ +F
Sbjct: 188 AARQAGNPRSLDEIDNVSRVEKDEVARTYR------YVVRELNLEVKPADPTSYVPRFAS 241
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L +++ ARD+L + KR+ + +G+ P G
Sbjct: 242 DL--DLSEEAERHARDLLENAKREGVHSGKSPVG 273
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 140 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVSTSALYAAC 197
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 198 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL- 251
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+K+V A +I+ + + +G+ P+G
Sbjct: 252 -DLSKEVQSKADEIIETTAEQGLLSGKSPTG 281
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQSKANEIIETTAEKGLLSGKSPTG 272
>gi|14590724|ref|NP_142794.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|3257275|dbj|BAA29958.1| 208aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 208
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
A R Y + TKGR E V A+C+Y++CR P L + + + + VY
Sbjct: 44 AVRIYRKLIKSGVTKGRSIESVAAACIYISCRLYKVPRTLDEIAKVAKEDKKVIARVYRL 103
Query: 157 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 216
+ + L ++ + +++ P ++ KF D L +++V A +L K IT+G+ P
Sbjct: 104 VVKKLGLSSKDMLIR---PEYYIDKFADEL--EVSERVKRRALRLLNEAKDKGITSGKNP 158
Query: 217 SGLCGAALYVSALTHGLKFSKSDI 240
GL + LY+++L G + ++ +I
Sbjct: 159 LGLAASILYIASLLEGERRTQKEI 182
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + LY
Sbjct: 135 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVATASLYA 192
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + I EL Y Y+ E N+ ++ DP ++ +F
Sbjct: 193 AARQAGNPRSLDEIERVSRIGRMELTRTYR------YVVRELNLEVQPADPESYVPRFVS 246
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L N++V AR+++ S +++ + +G+ P G+ AA+Y +AL + ++ +I E
Sbjct: 247 DLEL--NEEVSRRARELVDSARKEGVLSGKSPVGIAAAAIYAAALLSNERVTQGEISE 302
>gi|448445090|ref|ZP_21590145.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685396|gb|ELZ37750.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 348
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 130 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 188 RKEGIPRSLEEISDVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 242 -ELSEEVQSKANEIIETTADQGLLSGKSPTG 271
>gi|379003108|ref|YP_005258780.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
gi|375158561|gb|AFA38173.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
Length = 348
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 151 VQTSY----ERNFIQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 204
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 205 AAAALYMACRMMRMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 258
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V A DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 259 YISRIAEQLKLSG--EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 316
Query: 238 SD 239
D
Sbjct: 317 KD 318
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 221 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 273
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 274 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 312
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 39/253 (15%)
Query: 2 VWCSSCARHV----TGHRP--------YDSQLCCDRCGKVLEDHNFSTEAT-FVKNAAGQ 48
++CS+C V RP D D+ D ST F K++AG
Sbjct: 35 IFCSNCGIVVEEKTNDRRPERAFANSTTDKSHTGDKTSLTRHDRGLSTVINPFDKDSAG- 93
Query: 49 SQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRF 100
S LS + ++ +S + +R +++A ++ +MK L++ SD I A
Sbjct: 94 SPLSASMKSSMTRLRKWDNRSRIKTNDDRNLQQALLELSKMKEKLSL--SDAIAEKASYI 151
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
Y A+ + KGR + A+CLY ACR+ P L + + + I E+ A Y + +
Sbjct: 152 YRKALEKKLVKGRSIASLVAACLYAACRESEAPRTLREVAASIGIKRKEISATYRLIFKE 211
Query: 161 L----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 216
L + D + + ++ + L + T R A IL ++ ++ G+ P
Sbjct: 212 LDLKMPVIDSVSCIAKIASNAELSEKTKRY-----------AIKILKKAEKQNMSAGKHP 260
Query: 217 SGLCGAALYVSAL 229
GL +ALY++++
Sbjct: 261 MGLAASALYLASI 273
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 152 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 211
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 212 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 264
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 265 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 303
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 11/174 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY+AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVAAVIYRRALDTDLIRGRSIEGVATSALYIAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + S+ ++ E+G Y YIA E + + VDP +L +F L
Sbjct: 189 RQEGIPRSLEEVSSVARVDRREIGRTY------RYIAHELGLPMSPVDPKQYLPRFCSEL 242
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
++ V A I+ + + +G+ P+G AA+Y +AL K ++ DI
Sbjct: 243 --ELSEDVQQRATTIIERTTAEGLHSGKSPTGFAAAAIYTAALLCNEKRTQRDI 294
>gi|145592173|ref|YP_001154175.1| transcription initiation factor IIB [Pyrobaculum arsenaticum DSM
13514]
gi|189029859|sp|A4WMA6.1|TF2B_PYRAR RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|145283941|gb|ABP51523.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
arsenaticum DSM 13514]
Length = 333
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMRMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V A DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTG 269
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 144 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 201
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 202 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELE 256
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 257 L--SEEVQSKANEIIETTAEKGLLSGKSPTG 285
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 11/207 (5%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R + ER + AF D+ + ++ ++ I +AK+
Sbjct: 101 TVISFRDGGSGIARELQRAASRSQNSRSERNIMTAFRDIGSWCDQFSLPKT--ISDIAKQ 158
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y + +G+ E V A+C+++ACRQ P + + +++ LG Y L Q
Sbjct: 159 LYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICDLTHVSKKILGQCYKALEQ 218
Query: 160 VLYIADESNVLKQVD-----PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTG 213
+ ++ + P L ++ + L LP + +C DI+ + ++ I G
Sbjct: 219 AFNLTPGASAAHASNNPATGPENLLVRYCNHLDLPPNVQSICS---DIIVAARKHGIADG 275
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDI 240
R P + G A+Y + G S DI
Sbjct: 276 RSPVSIAGGAIYFTCYLLGKNKSPRDI 302
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S I VA Y A+ + +GR E V + LY AC
Sbjct: 136 ERNLQFALSEIDRMSSALGVPRS--IREVASVIYRRALDDDLIRGRSIEGVATAALYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 194 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MEPVDPQKYVPRFCSELE 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A+DI+ + + +G+ P+G
Sbjct: 249 L--SEEVQSKAKDIIETTAEKGLLSGKSPTG 277
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 143 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYA 200
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ + EL Y + + L + ++ DP+ ++ +F R
Sbjct: 201 AARQVGNPRSLDEFTAVSRVEKMELTRTYRYVIRELGLR-----VQPADPTSYVPRFASR 255
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L +++ AR++L + IT+G+ P G
Sbjct: 256 L--DLSEETERRARELLDDAASEGITSGKSPVG 286
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTG 269
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 186 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 240 -NLSEEVQSKATEIIDVSAEQGLLSGKSPTGF 270
>gi|352682668|ref|YP_004893192.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
gi|269990954|emb|CAP46908.1| transcription initiation factor IIB [Thermoproteus tenax Kra 1]
gi|350275467|emb|CCC82114.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
Length = 332
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 135 VQTSY----ERNFVQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 188
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 189 AAAALYMACRMLKTPRPLDELIRYTKASRREVARCYRLLLR------ELNVRVPISDPVL 242
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G+ V TA DI+ K+ +T G+ P+GL AA+Y+++L HG ++
Sbjct: 243 YISRVAEQLKLTGD--VVKTAIDIINRAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQ 300
Query: 238 SD 239
D
Sbjct: 301 KD 302
>gi|374325545|ref|YP_005083742.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
gi|356640811|gb|AET31490.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
Length = 333
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPIL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V +A DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVIKSAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 98 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 155
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 156 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSEL- 209
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + + +G+ P+G
Sbjct: 210 -ELSEEVQSKANNIIETTAEEGLLSGKSPTG 239
>gi|42557795|emb|CAF28768.1| putative transcription initiation factor TFIIB [uncultured
crenarchaeote]
Length = 304
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 17/221 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A LS + TI+ S+ +R +AF ++ ++
Sbjct: 71 MHDMGLATIIGPVDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRL 130
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K+ L +G D ++ A Y A+ + +GR + A+ LY ACR P L D ++
Sbjct: 131 KDKLAVG--DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDIAH 188
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
NI ++ Y L + L + + VDP + + + G ++K A +I
Sbjct: 189 ASNIKKKDVARCYRLLIRELDLK-----MPVVDPVKCVARIASK--SGLSEKTKRKALEI 241
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L ++ I+ G+ P GL AALYV+ + +G ++ D+ E
Sbjct: 242 LKKAEQGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAE 282
>gi|307166998|gb|EFN60844.1| Transcription factor IIIB 90 kDa subunit [Camponotus floridanus]
Length = 158
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ---LSGNFVRTIQ 60
C +C P C CG VLED ++ TF ++++G+ N
Sbjct: 6 CRNCGSTNIETDPARGDAICMECGFVLEDSVIVSQPTFEESSSGKVMPKYFVPNDSTGGA 65
Query: 61 SEYGA-------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
+ +GA S ++ +E A + + L + E+D ++++ R Y A+ RN T+GR
Sbjct: 66 TNFGARYFNEKESSKQTLENARKGIIHLAMQLGLDEND--INMSVRIYESALKRNMTRGR 123
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ QA+C+Y+ CR P +L +SN
Sbjct: 124 KQVHNQAACVYITCRHGDNPRILYIYSN 151
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTG 269
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V S +Y
Sbjct: 134 SKERNLKQALGEIDRMASALGLPKN--VRETASVIYRRALDDDLLPGRSIEGVATSAVYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + I+ E Y + + L + ++ DP ++ +F
Sbjct: 192 AARQTGVPRSLDEVAAVSRIDEMEFKRTYRYIVRELGLE-----IQPADPLSYVSRFASD 246
Query: 186 LLPGGNKKVCD----TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L + D A+D+L + K + +G+ P GL AA+Y +L K ++S++
Sbjct: 247 L------DISDESERRAKDLLKTAKEQGVHSGKSPVGLAAAAVYAGSLLSNEKVTQSEV 299
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ + +T+GR P+G+ AALY++++ G ++ D+ E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGECKTQRDVAE 284
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTG 269
>gi|448331660|ref|ZP_21520921.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
gi|445608983|gb|ELY62798.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
Length = 235
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 9/173 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + +A Y A+ + +GR E V SCLY AC
Sbjct: 47 ERNLQFALSEIDRMASALGVPRS--VREIASVIYRRALDEDLIRGRSIEGVATSCLYAAC 104
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P L + ++ + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 105 RQDGIPRSLEEIADVSRVERKEIGRTYRYVAQELSLE-----MEPVDPKEYVPRFCSEL- 158
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+++V A +I+ + +G+ P+G AA+Y ++L K ++ D+
Sbjct: 159 -DSSEEVLAKANEIIDVTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQRDV 210
>gi|407462181|ref|YP_006773498.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045803|gb|AFS80556.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 297
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 16/203 (7%)
Query: 43 KNAAGQSQLSGN-----FVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVH 95
K+A G+S S N +R + S A S ER + K+ + +K L I E+ +
Sbjct: 78 KDAKGKSLSSSNKSRFNRLRVLDSRSKARKSSERTLVKSLTFLNGLKGKLGISENT--IE 135
Query: 96 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 155
+ A +GR ++ + A+ LY++CRQ P L D S NI +L
Sbjct: 136 GTSSLFRRAQKHQLIRGRSSDDLMAAALYVSCRQTMTPRSLEDISEIANIT-----KKHL 190
Query: 156 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 215
Q + I + VL Q + S FL K ++ L G ++K A IL+ +++ G+
Sbjct: 191 QKSVRVLINEFGLVLPQYNISSFLTKLSNDL--GFSEKTKRYALKILSDVEKCGSAAGKN 248
Query: 216 PSGLCGAALYVSALTHGLKFSKS 238
P G A+LY++++ G S+S
Sbjct: 249 PIGQAAASLYLASMLMGENISQS 271
>gi|327311923|ref|YP_004338820.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
gi|326948402|gb|AEA13508.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+A+ G V A Y A+ + +GR E +
Sbjct: 120 VQTSY----ERNFVQAAQELERLKSAM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 173
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + + + E+ Y L + E NV + DP +
Sbjct: 174 AAAALYMACRMLKTPRPLDELIRFTKASRREVARCYRLLLR------ELNVRVPISDPVL 227
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G+ V TA DI+ K+ +T G+ P+GL AA+Y+++L HG ++
Sbjct: 228 YISRVAEQLKLTGD--VVKTAIDIINKAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQ 285
Query: 238 SD 239
D
Sbjct: 286 KD 287
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGF 271
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPRP--VKETASVIYRQALDQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K+V A +I+ + + +G+ P+G
Sbjct: 238 DVG--KEVETKAVEIIDTTTEQGLHSGKSPTGF 268
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 11/199 (5%)
Query: 46 AGQSQLSGNFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGI 103
+G+ + N +RT + + +RER +++A ++ +M +AL + S+ A Y
Sbjct: 125 SGEKRAQLNRLRTWNERFTSKDARERNLKQALGELERMASALGL--SEPCRETAAVIYRR 182
Query: 104 AVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
AV GR E + + LY A RQ+ P F + ++ Y L L +
Sbjct: 183 AVEEELLPGRSIEAMTTASLYAAARQQGTPRTFSAFESVSRVDDESTKRAYRYLSSELEL 242
Query: 164 ADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ +P +L +F L + ARD+L + K + + G+ P+GL AA
Sbjct: 243 E-----IAPPEPEQYLRQFASDLAVSDETERL--ARDVLEAAKAEELHIGKSPAGLTAAA 295
Query: 224 LYVSALTHGLKFSKSDIIE 242
+Y + + ++ I E
Sbjct: 296 IYAAGRLTNDRVTQETIDE 314
>gi|393795828|ref|ZP_10379192.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 306
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 14/213 (6%)
Query: 30 LEDHNFSTEATFVKNAAG-----QSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNA 84
+ D ST K+++G +++ N +RT + + KAF + MK
Sbjct: 74 MHDKGLSTVIGINKDSSGNALSSKTKYEFNRLRTWDQRSKSRSTVALSKAFTLLNAMKTK 133
Query: 85 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144
L I D ++ A Y AV T+GR + ++ LY ACR+ + P L D ++ N
Sbjct: 134 LGI--PDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACRENNIPRTLDDIADAGN 191
Query: 145 INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILAS 204
I L + + L + L Q D S F+ K ++ + +K A DIL
Sbjct: 192 IERRILSRDLRTIIKKLGLK-----LNQYDTSSFISKISNNM--NLKEKTKRDAFDILKR 244
Query: 205 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+ IT G+ P A+LY++ + + K S+
Sbjct: 245 CELKEITAGKHPVAQAAASLYIACMINNEKISQ 277
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTG 269
>gi|443709646|gb|ELU04238.1| hypothetical protein CAPTEDRAFT_78120, partial [Capitella teleta]
Length = 144
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C+ C P C CG VLED +E F +N+AG + + G +V S
Sbjct: 2 CTQCGCTDIDTDPARGDAVCTGCGSVLEDQIIVSEVQFQENSAGGASVVGQYV----SAE 57
Query: 64 GA------------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV 105
GA SR+ + ++ + + L + + + A F+ +AV
Sbjct: 58 GACGKSMNLGGGFHHGIGKESRQITYQNGKRRIQALGSQLKLNQ--HCIDTAYNFFKMAV 115
Query: 106 ARNFTKGRRTEQVQASCLYLACRQKSKP 133
+ T GRR+ QV A+CLY+ CR + P
Sbjct: 116 NKRLTIGRRSNQVVAACLYIVCRTEGTP 143
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 9/184 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I+S G S +R + KA + ++ + N+G + A Y A+ + KGR E+V
Sbjct: 89 IRSRVGTSEQRNLVKAMTILERIID--NLGLPKAVKEEAAIIYRKALEKKLIKGRSIEEV 146
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ + P L + S + N E+G Y L + ++ + DP +
Sbjct: 147 VAASVYAACRKMNIPTTLDEISKATSANKKEIGKAYR-----LLLREDVTEVPASDPKYY 201
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ K L G + KV A +I+ K+ IT+G+ P+ + AA+Y++A +G + S+
Sbjct: 202 VMKIAS--LLGLSGKVMTAATEIVERAKKAGITSGKDPASIAAAAVYIAANINGERRSQR 259
Query: 239 DIIE 242
+I E
Sbjct: 260 EISE 263
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTG 269
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY AC
Sbjct: 137 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAAC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ P L + + Y ++ E+G Y +IA E + L P+ ++ +F L
Sbjct: 195 RQAGVPRTLDEIATYSRVDRKEIGRTY------RFIARELGLKLLPTSPADYVPRFCAAL 248
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G + +V A +I+ + +T+GR P+G+
Sbjct: 249 --GLSGEVQKKAIEIIKKAEEKELTSGRGPTGV 279
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 121 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 179 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 233
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 234 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 262
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGF 271
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + LY
Sbjct: 132 SKERNLKQALGEIERMASALGLPEN--VRETASVIYRRALDDNLLPGRSIEGVSTAALYT 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + ++ EL Y YI E N+ +K DP ++ +F
Sbjct: 190 AARQAGIPRSLDEIERVSRVDRMELTRTYR------YIIRELNLEVKPADPESYIPRFVS 243
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + +V AR+++ + + D + +G+ P GL AA+Y +AL K +++D+ E
Sbjct: 244 DL--GLSDEVERRARELIEAARGDGLLSGKSPVGLAAAAVYAAALLCNEKVTQNDVSE 299
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 6/189 (3%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R G+ ER + AF D+ + + ++ I +AK+
Sbjct: 89 TVISFRDGGSGVARELQRAATRAQGSRSERNILTAFRDISTRCDQFALPKT--ISDIAKQ 146
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y KG+ E + A+C+++ACRQ P +F + +++ LG +
Sbjct: 147 LYKRVHDEGVLKGKPQEAITAACIFIACRQAHVPRTFREFCDLTHVSKKLLGFCCRTISL 206
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+A ++ P L ++ ++L LP + +C DI+ + I GR P
Sbjct: 207 TFNLAPGASTNPSAGPENILPRYFNQLDLPTYVQSIC---HDIIVEARNHGIADGRSPVS 263
Query: 219 LCGAALYVS 227
+ G A+Y +
Sbjct: 264 IAGGAIYFT 272
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGF 271
>gi|119873155|ref|YP_931162.1| transcription initiation factor IIB [Pyrobaculum islandicum DSM
4184]
gi|189029860|sp|A1RV37.1|TF2B_PYRIL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|119674563|gb|ABL88819.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum islandicum
DSM 4184]
Length = 333
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ G V A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA +IL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIEILQKAKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 238 --DVSKAVETKAVDIIEQTTEQGLHSGKSPTGF 268
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 238 --DVSKAVETKAVDIIEQTTEQGLHSGKSPTGF 268
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ E
Sbjct: 241 -DLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAE 294
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGF 271
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ P L + ++
Sbjct: 132 RDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIAD 191
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L+I L P ++ +F L G V A +I
Sbjct: 192 VSRVSKKEVGRTYRFLTRELHIR-----LPPTSPIDYVPRFASELNLSG--VVQSKAIEI 244
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ + +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 283
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVATASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + I+ EL Y Y+ E N+ +K DP ++ +F
Sbjct: 191 AARQAGNPRSLDEIERVSRIDRMELTRTYR------YVVRELNLEVKPADPESYVPRFVS 244
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L +++V AR+++ S +++ + +G+ P G+ AA+Y +AL + ++ ++ E
Sbjct: 245 DL--DLSEEVSRQARELIESARKEGVLSGKSPVGIAAAAIYAAALLSNERITQGEVSE 300
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY AC
Sbjct: 138 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAAC 195
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ P L + + Y ++ E+G Y +IA E + L P+ ++ +F L
Sbjct: 196 RQAGVPRTLDEIATYSRVDRKEIGRTY------RFIARELGLKLMPTSPADYVPRFCAAL 249
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G+ V A +I+ + +T+GR P+G+
Sbjct: 250 GLSGD--VQKKAIEIIKKAEEKELTSGRGPTGV 280
>gi|18977059|ref|NP_578416.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|18892698|gb|AAL80811.1| transcription initiation factor IIB chain b homolog [Pyrococcus
furiosus DSM 3638]
Length = 283
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 18/235 (7%)
Query: 17 YDSQ---LCCDRCGKVLEDHNFSTE---ATFVKNAAGQSQLSGNFVR-----TIQSEYGA 65
YD Q + C +CG +L + +E T + ++ G F R + +
Sbjct: 27 YDRQHGEVFCKKCGSILATNLVDSELSRKTKTNDIPRYTKRIGEFTREKIYRLRKWQKKI 86
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + A ++R++ L + + E A Y A R T+ E A+C+Y
Sbjct: 87 SSERNLVLAMSELRRLSGMLKLPKYVE--EEAAYLYREAAKRGLTRRIPIETTVAACIYA 144
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR P L + ++Y E+ + + + L + + + + P+ ++ KF D
Sbjct: 145 TCRLFKVPRTLNEIASYSKTEKKEIMKAFRVIVRNLNLTPKMLLAR---PTDYVDKFADE 201
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L +++V DIL + IT+G+ P L AALY+++L G + S+ +I
Sbjct: 202 L--ELSERVRRRTVDILRRANEEGITSGKNPLSLVAAALYIASLLEGERRSQKEI 254
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 134 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATAALYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 192 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + + +G+ P+G
Sbjct: 247 L--SEEVQSKANEIIETTAEEGLLSGKSPTG 275
>gi|14548146|gb|AAK66803.1|U40238_26 transcription factor TFIIB [uncultured crenarchaeote 4B7]
Length = 211
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S ++ + +A +M ++K+ L++ + ++ A Y A+ + KGR + +
Sbjct: 14 RSQAHSSVDKNLRQALSEMDKLKDKLSL--TGAVIEKAAYIYRKAIEKKLVKGRSIQGLV 71
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELG----AVYLQLCQVLYIADESNVLKQVDP 175
A+C+Y ACR P L D +N +NI ++ ++ +L + +AD N + ++
Sbjct: 72 AACVYAACRDTETPRTLGDVANGINIRRKDVARCYRLIFRELDLKVPVADPINGIPRIAS 131
Query: 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
SI L + T R A +IL K+ + G+ P+GL AALY++ +T G
Sbjct: 132 SIGLGEKTKR-----------KAVEILRKAKKIGVVAGKDPTGLAAAALYLACITEGGNK 180
Query: 236 SKSDIIE 242
++ +I E
Sbjct: 181 TQKEISE 187
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 121 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 179 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 233
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 234 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 262
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + L+ VDP F+ +F+ L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LRPVDPKQFVPRFSSSL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -HLSEEVQSKATEIIDVSAEQGLLSGKSPTGF 271
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V SCLY C
Sbjct: 137 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRQALSEDLIRGRSIEGVATSCLYAGC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + + + E+G Y YIA E ++ +K DP ++ +F L
Sbjct: 195 RQEGIPRSLEEVTEVSRVGKKEIGRTY------RYIAKELSLEMKPADPKEYVPRFCSDL 248
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
K+ A +I+ + +G+ P+G AA+Y ++L K ++ ++ E
Sbjct: 249 EVSEEVKM--KAIEIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEVAE 302
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -ELSEEVQSKATEIIDVSAEQGLLSGKSPTGF 271
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 128 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 187
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 188 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 240
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 241 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 279
>gi|223994943|ref|XP_002287155.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976271|gb|EED94598.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 386
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
TA ++A MKRDWI GR+P+G+C AAL +++ HG D+ +
Sbjct: 2 TALRLVARMKRDWIVAGRRPAGICAAALLIASRAHGFDRQHHDVTKVL------------ 49
Query: 257 ANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAF 311
+V G+ V+ + K+ + GL EEF T +EG DPP F
Sbjct: 50 --------RVCGLT-VMSRVKEFEATPSAGL---TLEEFHT--NDVEGEVDPPIF 90
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 398 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 457
EVD H ++E ++ ++ NREY+E Q KE A+AA +A ++
Sbjct: 258 EVDFLFHTDDEVREREAVFNLQNREYIEIQHQKENERLLAEAASKAKQED---------- 307
Query: 458 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRMLTKKRLSSKINYDVLEKLF 516
+A+ ++ + + A+ P + T EA ++ +++S KINYD + LF
Sbjct: 308 -------EIAQEEGRRRYLKTSRARKRNPNELTTEEALLEVVRTRKISRKINYDAMSALF 360
Query: 517 DDS 519
DD+
Sbjct: 361 DDT 363
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -DLSEEVQAKATEIIDVSAEQGLLSGKSPTGF 271
>gi|261402160|ref|YP_003246384.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
gi|261369153|gb|ACX71902.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
Length = 666
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 505 IYRNAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTY----- 559
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 560 -RFLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQATEKGLTSGRGPT 615
Query: 218 GLCGAALYVSALTHGLKFSKSDIIE 242
G+ AA+Y++++ G + ++ ++ E
Sbjct: 616 GVAAAAIYIASVLLGCRRTQREVAE 640
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|161527525|ref|YP_001581351.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338826|gb|ABX11913.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 54 NFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
N +RT + + + KAF + MK L++ D +V A Y V+ T+GR
Sbjct: 103 NRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLSV--PDNVVENAAYIYRKIVSAKLTRGR 160
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
+ ++ LY ACR+ + P L D + N+ L + + L + L Q
Sbjct: 161 TMASLISASLYAACRENNIPRTLDDIAKAGNVERRILSRDLRTIIKKLGLN-----LNQY 215
Query: 174 DPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
D + F+ K ++ + L K+ A DIL + + IT G+ P A+LY+S + +G
Sbjct: 216 DTASFISKISNNMNLKETTKR---GAFDILKRCEEEGITAGKHPVAQAAASLYISCVLNG 272
Query: 233 LKFSKSDI 240
+ S+ +
Sbjct: 273 ERVSQKRV 280
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 162 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 219
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 220 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL- 273
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 274 -ELSEEVQSKATEIIDVSAEQGLLSGKSPTGF 304
>gi|47213352|emb|CAF92975.1| unnamed protein product [Tetraodon nigroviridis]
Length = 446
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + + D+I
Sbjct: 2 TALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRTVKDVI 46
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 28/114 (24%)
Query: 402 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 461
Y+ N++E K +W + N EYL+EQ KEA K + +Y
Sbjct: 319 YILNDKEVEVKTELWMKQNAEYLKEQKEKEARIQKEKE--QGTY--------------KE 362
Query: 462 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
A K R++K+ A TA EA ML +K++SSKINYDVL L
Sbjct: 363 KAKKPKKKREQKE------------ASTAGEAIEMMLERKKISSKINYDVLRHL 404
>gi|397651191|ref|YP_006491772.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
gi|393188782|gb|AFN03480.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
Length = 273
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 18/235 (7%)
Query: 17 YDSQ---LCCDRCGKVLEDHNFSTEA---TFVKNAAGQSQLSGNFVR-----TIQSEYGA 65
YD Q + C +CG +L + +E T + ++ G F R + +
Sbjct: 17 YDRQHGEVFCKKCGSILATNLVDSELSRKTKTNDIPRYTKRIGEFTREKIYRLRKWQKKI 76
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + A ++R++ L + + E A Y A R T+ E A+C+Y
Sbjct: 77 SSERNLVLAMSELRRLSGMLKLPKYVE--EEAAYLYREAAKRGLTRRIPIETTVAACIYA 134
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR P L + ++Y E+ + + + L + + + + P+ ++ KF D
Sbjct: 135 TCRLFKVPRTLNEIASYSKTEKKEIMKAFRVIVRNLNLTPKMLLAR---PTDYVDKFADE 191
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L +++V DIL + IT+G+ P L AALY+++L G + S+ +I
Sbjct: 192 L--ELSERVRRRTVDILRRANEEGITSGKNPLSLVAAALYIASLLEGERRSQKEI 244
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 121 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 179 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 233
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 234 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 262
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y A+ +N +GR E V A+ LY AC
Sbjct: 138 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAAC 195
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ P L + + Y ++ E+G Y +IA E + L P+ ++ +F L
Sbjct: 196 RQAGVPRTLDEIAQYSRVDRKEIGRTY------RFIARELGLKLMPTSPADYVPRFCAAL 249
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G + +V A +I+ + +T+GR P+G+
Sbjct: 250 --GLSGEVQRKAIEIIKKAEERELTSGRGPTGV 280
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 11/179 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + AF D+ + ++ ++ I +AK+ Y + +G+ + V A+C+++AC
Sbjct: 129 ERNILTAFRDISSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA-----DESNVLKQVDPSIFLHKF 182
RQ P + +++ LG Y L Q ++ + ++ P L ++
Sbjct: 187 RQAHVPRTFREICTLTHVSKKVLGQCYKALEQAFNLSPGATHNSNSSSTPTGPENLLVRY 246
Query: 183 TDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ L LP + +C DI+ + ++ I GR P + G A+Y + L G S DI
Sbjct: 247 CNHLDLPANVQTICS---DIIVTARKYGIADGRSPVSIAGGAIYFTCLLLGKSKSVRDI 302
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 186 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 240 -ELSEEVQAKATEIIDVSAEQGLLSGKSPTGF 270
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
++ D ST + A LS + TI+ S+ A +R + +A D+ +
Sbjct: 68 MIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNK 127
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ +++ + ++ A Y A+ + +GR + A+ LY ACR P L D S
Sbjct: 128 LKDKVSVPAN--VLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVS 185
Query: 141 NYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
+ N+ ++ Y L L + D + ++ + + + T R
Sbjct: 186 DAANVKRKDIARCYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRY---------- 235
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
A +L + + G+ P GL ALY+S + +G+ ++ D+ E
Sbjct: 236 -AVKVLKDAQERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAE 280
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + L+ VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LRPVDPKQFVPRFASSL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGF 271
>gi|302791415|ref|XP_002977474.1| hypothetical protein SELMODRAFT_417248 [Selaginella moellendorffii]
gi|300154844|gb|EFJ21478.1| hypothetical protein SELMODRAFT_417248 [Selaginella moellendorffii]
Length = 805
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 4 CSSCARHVT-GHRPYDSQLCCDRCGKVLEDHNFSTEATF-VKNAAGQSQLSGNFVRTIQS 61
CS+C R T P CC CG V++D ++ + G + ++G + +
Sbjct: 330 CSACGRAGTVTTDPLSGLFCCCECGVVVDDDALGSDHQVGLVGERGGTLVAGEGIGALAG 389
Query: 62 EY-----GASRERLMEKAFDDMRQMKNA-----LNIGESDEIVHVAKRFYGIAVARNFTK 111
+ G S + +K D +R++++ L ++DE+ + R A ++
Sbjct: 390 KRFLYRNGGSDQYFAKKKQDALRRIRDVAAALRLQPNDADEVEAMVDR----ATNGDWGS 445
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR + + +C Y+ R P L++ + + V ELG V +L + +A L
Sbjct: 446 GRWFDALVGACAYVVVRNHRLPLTLVEVAYASDCGVRELGRVLGKLVREFAMA-----LP 500
Query: 172 QVDPSIFLHKFT------DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
Q DP +FL + +L +K+ R +L M +++TGR AAL
Sbjct: 501 QEDPIVFLERLVLTHAGFSKLSRDAARKIIGQCRVLLEWMATWFVSTGRHALPAAAAALV 560
Query: 226 VSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPN----NGPKVSGMNEV-LCKHKDTG 280
+ A + ++ ++ ELH VA ++ VS M CK T
Sbjct: 561 IVADANRIEIGLEEV-------SSELHSPVATSMKRFREIQEALVSTMKTFPWCKTVVTT 613
Query: 281 KPFACGLC 288
K +C LC
Sbjct: 614 KNISCHLC 621
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 188 AARQAGTPRSLDEISQVSRVDRMELTRTYRYIVRELSLE-----VKPADPEHYVPRFISD 242
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L +++ T+R++L S + D + +G+ P G
Sbjct: 243 L--DLSEETERTSRELLESARGDGVHSGKSPVG 273
>gi|302780755|ref|XP_002972152.1| hypothetical protein SELMODRAFT_412683 [Selaginella moellendorffii]
gi|300160451|gb|EFJ27069.1| hypothetical protein SELMODRAFT_412683 [Selaginella moellendorffii]
Length = 799
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 4 CSSCARHVT-GHRPYDSQLCCDRCGKVLEDHNFSTEATF-VKNAAGQSQLSGNFVRTIQS 61
CS+C R T P CC CG V++D ++ + G + ++G + +
Sbjct: 332 CSACGRAGTVTTDPLSGLFCCCECGVVVDDDALGSDHQVGLVGERGGTLVAGEGIGALPG 391
Query: 62 EY-----GASRERLMEKAFDDMRQMKNA-----LNIGESDEIVHVAKRFYGIAVARNFTK 111
+ G S + +K D +R++++ L ++DE+ + R A ++
Sbjct: 392 KRFLYRNGGSDQYFAKKKQDALRRIRDVAAALRLQPNDADEVEAMVDR----ATNGDWGS 447
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR + + +C Y+ R P L++ + + V ELG V +L + +A L
Sbjct: 448 GRWFDALVGACAYVVVRNHRLPLTLVEVAYASDCGVRELGRVLGKLVREFAMA-----LP 502
Query: 172 QVDPSIFLHKFT------DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
Q DP +FL + +L +K+ R +L M +++TGR AAL
Sbjct: 503 QEDPIVFLERLVLTHAGFSKLSRDAARKIIGQCRVLLEWMATWFVSTGRHALPAAAAALV 562
Query: 226 VSALTHGLKFSKSDIIEDFMARKKELHEGVAANLPN----NGPKVSGMNEV-LCKHKDTG 280
+ A + ++ ++ ELH VA ++ VS M CK T
Sbjct: 563 IVADANRIEIGLEEV-------SSELHSPVATSMKRFREIQEALVSTMKTFPWCKTVVTT 615
Query: 281 KPFACGLC 288
K +C LC
Sbjct: 616 KNISCHLC 623
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 188 AARQAGTPRSLDEISQVSRVDRMELTRTYRYIVRELSLE-----VKPADPEHYVPRFISD 242
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L +++ T+R++L S + D + +G+ P G
Sbjct: 243 L--DLSEETERTSRELLESARGDGVHSGKSPVG 273
>gi|329766198|ref|ZP_08257756.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137257|gb|EGG41535.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 262
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 14/214 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSG-----NFVRTIQSEYGASRERLMEKAFDDMRQMKN 83
+ D ST K+++G + S N +RT + + KAF + MK
Sbjct: 29 TMHDKGLSTVIGINKDSSGNTLSSKTKYEFNRLRTWDQRSKSRSTVALSKAFTLLNAMKT 88
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L G D ++ A Y AV T+GR + ++ LY ACR+ + P L D ++
Sbjct: 89 KL--GIPDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACRENNIPRTLDDIADAG 146
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
NI L + + L + L Q D S F+ K ++ + +K A DIL
Sbjct: 147 NIERRILSRDLRTIIKKLGLK-----LNQYDTSSFISKISNNM--NLKEKTKRDAFDILK 199
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+ IT G+ P A+LY++ + + K S+
Sbjct: 200 RCELKEITAGKHPVAQAAASLYIACMINNEKISQ 233
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 240 --DVDKDVETKAIDIIDRTTEQGLHSGKSPTGF 270
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 240 DVG--KDVETKAIEIIDQTTDQGLHSGKSPTGF 270
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL- 242
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 243 -ELSEEVQTKANEIIEKTAEEGLLSGKSPTG 272
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 9/154 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + +A ++ +M A N+G ++ A Y AV N +GR E V A+ +Y
Sbjct: 119 SAERNLSQALQELERM--ASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYA 176
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR P L + S I E+G VY + + L + + P ++ +F +
Sbjct: 177 ACRMLGIPRTLEEISTVTRIKKREIGRVYRIMSRTLKLN-----IYPTKPEDYIDRFCSK 231
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L G K A +I+ + I +GR P+G+
Sbjct: 232 LKLSGEVKT--KAYEIIKMARERDIISGRGPTGV 263
>gi|408403957|ref|YP_006861940.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364553|gb|AFU58283.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 322
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 108/260 (41%), Gaps = 38/260 (14%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED---------HNFSTEATFVKN-------- 44
V CS+C V ++ C RCG V++ FS + + K+
Sbjct: 5 VVCSACKNEVVVTDHECGEVICSRCGIVIDRVESPAVQDWRAFSVDEFYRKSRTGAPTSL 64
Query: 45 ---------AAGQSQLSG---NFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDE 92
+ G S+ +G N +R A+ +R +++A ++ +K +L G D
Sbjct: 65 ARYNKGLLTSIGNSKANGLNFNRIRVWDFRIQAANDRSLKQALPELEHLKESL--GLPDA 122
Query: 93 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152
IV + FY A KGR V A+ +YLACR+ P L + + N+ ++
Sbjct: 123 IVEKSAYFYRKASRLGLIKGRTVSSVLAASVYLACRELENPRTLSEIATASNVARKKISR 182
Query: 153 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITT 212
Y L ++ D + VD + + + +++ G ++K A I+ + I+
Sbjct: 183 DYRMLVRMF---DPK--IPTVDHARCITRIANKV--GVSEKTKRIAVKIMREIVAMQISA 235
Query: 213 GRKPSGLCGAALYVSALTHG 232
G+ P G+ LY++ + G
Sbjct: 236 GKGPMGIAATVLYIACMHAG 255
>gi|322788519|gb|EFZ14161.1| hypothetical protein SINV_13195 [Solenopsis invicta]
Length = 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 28/121 (23%)
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
DIDD E+D Y+ +E+E K +W ++N +YL +Q KE K +
Sbjct: 9 DIDDEELDSYILSEKESQSKSALWNKVNADYLIQQKEKEEKRLKEKEEGKP--------- 59
Query: 453 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 512
E++++R K+ PA TA EA +ML +K++SSKINY+VL
Sbjct: 60 -------------------ERKRRRTTSKKHRTPANTAGEAIEKMLQEKKISSKINYEVL 100
Query: 513 E 513
+
Sbjct: 101 K 101
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 238 DVG--KDVETKAVEIIDQTTEQGLHSGKSPTGF 268
>gi|448372152|ref|ZP_21557122.1| transcription initiation factor TFB [Natrialba aegyptia DSM 13077]
gi|445646613|gb|ELY99598.1| transcription initiation factor TFB [Natrialba aegyptia DSM 13077]
Length = 308
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 25/241 (10%)
Query: 15 RPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSE 62
R YDS+ C +R G L D STE +A G +++SG
Sbjct: 59 RAYDSEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NEISGQKRRRLARMRREQAHGR 116
Query: 63 YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
+ + ER + ++R++ +AL + S + A + + A + +GR E + A+
Sbjct: 117 FQSKAERNLAHGLGEVRRLASALEL--SGSVRDQACQLFRSAQNEDLLRGRSIEAIAAAS 174
Query: 123 LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF 182
+Y ACR + L+ D S + + Y L + L + E V PS+F+ +
Sbjct: 175 VYGACRCNGRSRLVDDVSEMARVAESRVTNAYKTLNEELSLPAEP-----VAPSMFVPRL 229
Query: 183 -TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+D P ++ AR + + +TTG P+G A LY + G ++ D+
Sbjct: 230 ASDLECP---DEIRQRARTLAEQAEERGVTTGVHPAGFAAACLYKAGQEQGQWVTQRDVA 286
Query: 242 E 242
E
Sbjct: 287 E 287
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
++ D ST + A LS + TI+ S+ A +R + +A D+ +
Sbjct: 70 MIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNK 129
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ ++I + ++ A Y A+ + +GR + A+ LY ACR P L D +
Sbjct: 130 LKDKVSIPAN--VLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVA 187
Query: 141 NYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
+ N+ ++ Y L L + D + ++ + + + T R
Sbjct: 188 DAANVKRKDIARCYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRY---------- 237
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
A +L + + G+ P GL ALY+S + +G+ ++ D+ E
Sbjct: 238 -AVKVLKEAQERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAE 282
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 19/207 (9%)
Query: 32 DHNFSTEATFVKNAAGQ--SQLSGNFVRTI---QSEYGASR-----ERLMEKAFDDMRQM 81
D STE + + S+++G R I + E+ +R ER F ++R++
Sbjct: 64 DRGLSTEIGYGSGTPSEYRSRITGRKRRQIARLRREHNRARISSKAERNQVYGFTEIRRI 123
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
L++ D A + A + +GR E A+ +Y CR +S P + + +
Sbjct: 124 NTGLSL--PDSAREQACTLFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTIDEITT 181
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ +EL A Y L + L + +DP+ +L ++ +L G + AR+
Sbjct: 182 VARADRHELTAAYDALNRELGLP-----TGPIDPTGYLPRYASKL--GLETAIERRAREH 234
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSA 228
L + ++ + +GR PSG+ A LY +A
Sbjct: 235 LTVLLQEGLISGRNPSGVAAACLYEAA 261
>gi|260818773|ref|XP_002604557.1| hypothetical protein BRAFLDRAFT_220499 [Branchiostoma floridae]
gi|229289884|gb|EEN60568.1| hypothetical protein BRAFLDRAFT_220499 [Branchiostoma floridae]
Length = 153
Score = 57.0 bits (136), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 23 CDRCGKVLEDHNFSTEATFVKN-----------AAGQSQLSGNFVRTIQSEYGA-SRERL 70
C CG VLED+ +E TF ++ +A + + VR +G SR
Sbjct: 26 CTGCGSVLEDNIIVSEVTFAESGDRTSVIGQFVSADDGKGNAGMVRGFHHGFGKESRAIT 85
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
++ + Q+ + L + + + A F+ +AV + T+GR+T V A+CLYL CR +
Sbjct: 86 LQNGKRKITQLGHQLKLNQ--HCLDTAFNFFKMAVNKKLTRGRKTNHVVAACLYLVCRTE 143
Query: 131 SKPFLL 136
P +L
Sbjct: 144 GTPRIL 149
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY AC
Sbjct: 132 ERNLKYALSEIDRMVSAL--GVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 190 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL 243
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 244 --DVDKDVETKAIDIIDETTEKGLHSGKSPTGF 274
>gi|260818777|ref|XP_002604559.1| hypothetical protein BRAFLDRAFT_79421 [Branchiostoma floridae]
gi|229289886|gb|EEN60570.1| hypothetical protein BRAFLDRAFT_79421 [Branchiostoma floridae]
Length = 1246
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 130/320 (40%), Gaps = 55/320 (17%)
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF-------- 244
+V TA +++ MKRDW+ GR+PSGLCGAAL VSA H ++ +II+
Sbjct: 176 EVSMTALRLVSRMKRDWMHGGRQPSGLCGAALLVSARLHDFHRTQKEIIKVLEEQLDKEI 235
Query: 245 ----------------------MARKKEL--HEGVAANLPNNGPKVSGMNEVLCKHKDTG 280
M + K L +G+ + P S M + + T
Sbjct: 236 EGELTSLEVEIEKELEREREKRMKKMKNLLAAKGITESDIRGTPAGSPMPPLEGQEDGTS 295
Query: 281 KP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFM 339
P C S ++ G +PP + +E++ + +E E E +
Sbjct: 296 SPGTPCSRVDS-----PSVVPGTSSSGNPPEQKHSEQQHSEQQLPQEQQLSEEEVMGKIL 350
Query: 340 SRVDKV-----QSPEPESIGVPKNCT--TQTASNEGEGDHTKTPGVDATTEASDGSDNFS 392
S + P PES+G+ + + AS + + + + G + +
Sbjct: 351 SPFAGIAPALGPEPTPESLGIKDSLDECLKVAS-----EKEEGTEDEDGEKEEGGELDLT 405
Query: 393 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 452
I+D E+D +L N+EE K IW N +Y+ Q KE A + +K PE
Sbjct: 406 GINDEELDWFLLNDEEVRIKTEIWTLANADYI--QKMKEKEEKEALEKEQGIHK--PE-Q 460
Query: 453 QAAQELAAAAAAAVAKSRKE 472
+ ++AAA ++ A+ R+E
Sbjct: 461 KKVNKMAAAPSSLGAQFREE 480
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
+ + S + DP +++H+F +L G +V TA +++ MKRDW+ GR+PSGLCG
Sbjct: 4 VPENSGCVSAGDPCLYIHRFAHKLEFGERTHEVSMTALRLVSRMKRDWMHGGRRPSGLCG 63
Query: 222 AAL 224
A +
Sbjct: 64 AGV 66
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
+V TA +++ MKRDW+ GR+PSGLCGA +
Sbjct: 137 EVSMTALRLVSRMKRDWMHGGRRPSGLCGAGM 168
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 472 EKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
+ Q +R + K A TA EA +ML +K++SSKINYDVL L
Sbjct: 1073 QGQLRRKPKKKQPIQASTAGEAIEKMLQEKKISSKINYDVLRDL 1116
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G + A Y A+ ++ +GR E V S LY AC
Sbjct: 130 ERNLKYALSEIDRMVSAL--GVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 188 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 241
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 242 DVG--KDVETKAVEIIEQTTEQGLHSGKSPTGF 272
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 16/201 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M A+ +G + A Y AV + +GR E + ++ LY AC
Sbjct: 112 ERNLAFALSELDRM--AVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAAC 169
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + + E+G Y + + L + N+L P ++ +F D L
Sbjct: 170 RMEGIPRTLDEIARFSKVTKKEIGRSYRFMARGLGL----NLLP-TSPIDYVDRFGDAL- 223
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE----- 242
G + + AR+IL R IT+G+ P+GL AALY+++L G K ++ ++ E
Sbjct: 224 -GVSARTKKRAREILQEAIRVGITSGKGPTGLAAAALYLASLLEGEKKTQREVAEVANVT 282
Query: 243 --DFMARKKELHEGVAANLPN 261
R KEL E + N+P
Sbjct: 283 EVTVRNRYKELVEKLGINVPT 303
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + +G+ P+G
Sbjct: 244 L--SEEVQTKANEIIEKTAEKGLLSGKSPTG 272
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 241 -ELSEEVQAKAVEIIDVSAEQGLLSGKSPTGF 271
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y L + L I L P ++ +F L G + + A +I
Sbjct: 191 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEAQSRAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 244 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 282
>gi|15668963|ref|NP_247767.1| transcription initiation factor IIB [Methanocaldococcus jannaschii
DSM 2661]
gi|2833587|sp|Q58192.1|TF2B_METJA RecName: Full=Transcription initiation factor IIB; Short=TFIIB;
Contains: RecName: Full=Endonuclease Mja Tfb; AltName:
Full=Mja TFIIB intein; AltName: Full=Mja Tfb intein
gi|1591481|gb|AAB98771.1| transcription initiation factor IIB (TFIIB) [Methanocaldococcus
jannaschii DSM 2661]
Length = 673
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 512 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTY----- 566
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 567 -RFLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 622
Query: 218 GLCGAALYVSALTHGLKFSKSDIIE 242
G+ AA+Y++++ G + ++ ++ E
Sbjct: 623 GVAAAAIYIASVLLGCRRTQREVAE 647
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S +S ER + +A +++ ++ + LN+ + + A R Y AV + +GR E V
Sbjct: 113 RSRIQSSIERNLAQAMNELDRLSDQLNLPRN--VKEEAARIYRRAVEKGLVRGRSIESVI 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ +Y ACR+ P L + S + + ++ Y L + L I +++ DP F+
Sbjct: 171 AAAIYAACRELKVPRTLDEISKHTKSSRKDIARCYRLLLKELDIKVQTS-----DPIDFI 225
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+ L GG V A +IL + +T G+ P+GL
Sbjct: 226 PRIAHALNLGGG--VMKKAAEILHKARSIGVTAGKDPAGL 263
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S E+ + A ++ +M ALN+ ++ Y A R+ KGR E++ ++ LY+
Sbjct: 94 SNEKSLSFALGEIDRMACALNLPR--DLRETTSLLYRKAAKRSLIKGRSIEELASAMLYI 151
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CRQ P L + + + + ++ Y+ L L I L DP+ ++ +F
Sbjct: 152 TCRQYGIPRTLKEIAAVSRMPLKKIRRAYIFLLHKLEIK-----LAPADPACYIPRFCSE 206
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
L G + + A +I++ K G P+G AA+Y+++L G
Sbjct: 207 L--GLRDVIRERAIEIVSEDKETIAAKGWTPTGTAAAAIYLASLLSG 251
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALSEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + S ++ E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVSAVSRVDRMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 -DLSEEVQAKANEIIDTTAEQGMLSGKSPTG 273
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A +I+ + + +G+ P+G
Sbjct: 238 --NVDKDVETKAVEIIDQTTQQGLHSGKSPTGF 268
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 9/194 (4%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S +S R + ER + AF D+ + ++ ++ I +AK+
Sbjct: 101 TVISFRDGGSGISRELQRAASRAQSSRTERNLLTAFRDISNWCDQFSLPKT--ISDIAKQ 158
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y +G+ E V A+C+++ACRQ P D + +++ LG Y L +
Sbjct: 159 LYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFKDICSLTHVSKKMLGQCYKVLER 218
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+ P FL ++ + L LP + +C RD++ + + I R P
Sbjct: 219 AF---TQVGAAPSSGPEGFLVRYCNYLDLPPNVQGIC---RDVIVAAREHGIADSRSPLS 272
Query: 219 LCGAALYVSALTHG 232
+ G A+Y + G
Sbjct: 273 IAGGAIYFCCMLLG 286
>gi|74355107|gb|AAI03862.1| BRF1 protein [Homo sapiens]
Length = 161
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 30/127 (23%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVV------------ 49
Query: 257 ANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA 314
KV S + + L + +DT + +EFM I LE DPP++
Sbjct: 50 --------KVCESTLRKRLTEFEDTPT------SQLTIDEFMKID--LEEECDPPSYTAG 93
Query: 315 ERERMVK 321
+R+ +K
Sbjct: 94 QRKLRMK 100
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 42/243 (17%)
Query: 23 CDRCGKVLEDHNFSTEA---TFVKNAAGQSQ----------LSGNFVRTIQSE----YGA 65
C CG V+ D T + TF + G +Q L+G+ + TI S +G
Sbjct: 45 CGSCGLVVGDRIVDTRSEWRTFANDEGGDNQSRVGSSANPLLNGSQLDTIISTQDGGHGL 104
Query: 66 SR----------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT 115
S+ ER + A+ ++ M +A+++ +S I +AK+ + KGR
Sbjct: 105 SKTQGRSVVQKGERNLMSAYREISAMCDAIHLPKS--ISDIAKQVFKRVDDSKALKGRSN 162
Query: 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY---------IADE 166
E + ++C+++ACRQ P + N+ E+G V+ L ++L D+
Sbjct: 163 ESIISACIFIACRQGKAPRTFKEICTLTNVPKKEIGRVFKSLQKMLTDNNILDNTGKTDD 222
Query: 167 SNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
S V P + +F +RL LP V A ++ + + GR P + + +Y
Sbjct: 223 SYVPSSTSPKDLMVRFCNRLSLP---TSVQIAASELASRASVEGTLAGRSPISIAASGIY 279
Query: 226 VSA 228
+++
Sbjct: 280 MAS 282
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY AC
Sbjct: 149 ERNLKYALSEIDRMVSAL--GVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTAC 206
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 207 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL 260
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 261 --DVDKDVETKAIDIIDETTEKGLHSGKSPTGF 291
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 19/203 (9%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI----- 240
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++
Sbjct: 246 L--GLSDEAERRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVAN 303
Query: 241 IEDFMARKK-----ELHEGVAAN 258
I + R + E +GVA N
Sbjct: 304 ISEVTIRNRYHELLEAEDGVALN 326
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER +++A ++ +M +AL G D++ A Y A+ + GR E V + LY
Sbjct: 137 SRERNLKQALGEIDRMASAL--GLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 195 AARQAGTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPESYVPRFASD 249
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L ++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ E
Sbjct: 250 LDLADETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSE 304
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER +++A ++ +M +AL G D++ A Y A+ + GR E V + LY
Sbjct: 137 SRERNLKQALGEIDRMASAL--GLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 195 AARQAGTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPESYVPRFASD 249
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L ++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ E
Sbjct: 250 LDLADETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSE 304
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATSALYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELE 244
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 245 L--SEEVQSKANEIIETTAEKGLLSGKSPTG 273
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 88 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 145
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 146 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 199
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 200 -ELSEEVQAKATEIIDVSAEQGLLSGKSPTGF 230
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 17/177 (9%)
Query: 68 ERLMEKAFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
ER + A ++ +M +AL NI E+ +V Y AV++N +GR E V A+ L
Sbjct: 146 ERNLAFALSELDRMASALGLPRNIRETSAVV------YRKAVSKNLIRGRSIEGVAAAAL 199
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y ACRQ P L + + ++ E+G Y + + L + L P ++ +F
Sbjct: 200 YAACRQNGVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFC 254
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++
Sbjct: 255 SGLSLKG--EVQSKAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREV 309
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY AC
Sbjct: 134 ERNLKYALSEIDRMVSAL--GVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 192 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 245
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K + A +I+ + +G+ P+G
Sbjct: 246 DVG--KDIETKAVEIIDRTTEQGLHSGKSPTGF 276
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVATASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + N + E+ Y + + L + +K DP+ ++ +F
Sbjct: 188 AARQAGNPRSLDEIDNVSRVEKDEVARTYRYVVRELKLE-----VKPADPTSYVPRFASD 242
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L ++ ARD+L + K++ + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 243 LEL--TEEAERHARDLLENAKQEGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSE 297
>gi|242399568|ref|YP_002994993.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
gi|242265962|gb|ACS90644.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
Length = 272
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
IG I +A Y AV +GR E + ++CLY ACR + P L + ++ ++
Sbjct: 98 IGLPRNIREIAALLYRKAVINRLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDFSKVD 157
Query: 147 VYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y Y+ E N+ L+ +P ++ +F D+L G +K A I+
Sbjct: 158 KKEIGRSY------RYLVRELNLKLRPTNPVDYVVRFGDQL--GVTEKTKRRAMRIVNQA 209
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ +T+G+ P+G+ AA+Y+++L G K ++ ++ E
Sbjct: 210 IKMGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAE 246
>gi|126631222|gb|AAI33656.1| BRF1 protein [Homo sapiens]
Length = 184
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 30/127 (23%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEGVA 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVV------------ 49
Query: 257 ANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA 314
KV S + + L + +DT + +EFM I LE DPP++
Sbjct: 50 --------KVCESTLRKRLTEFEDTPT------SQLTIDEFMKID--LEEECDPPSYTAG 93
Query: 315 ERERMVK 321
+R+ +K
Sbjct: 94 QRKLRMK 100
>gi|433441074|ref|ZP_20408566.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432187300|gb|ELK44608.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 208
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 20 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 77
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 78 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 131
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + +G+ P+G
Sbjct: 132 -DLSEEVQAKATEIIDVSAEQGLLSGKSPTGF 162
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 238 DVG--KDVETKAVEIIDRTTDQGLHSGKSPTGF 268
>gi|429190461|ref|YP_007176139.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134679|gb|AFZ71690.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 333
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 54 NFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
N +RT + + S+ER +++A ++ +M +AL + E A Y AV +
Sbjct: 127 NRLRTWNERFTSTNSQERNLKQALGELERMASALGLPEP--CRETAAIIYRQAVDADLLL 184
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR E V + LY A RQ P F + ++ + Y QL L + +
Sbjct: 185 GRSIEAVATASLYAAARQHGTPRTFSTFESVSRVDEPPIKRAYRQLSSDLGLE-----MA 239
Query: 172 QVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 216
DP +L +FT L G +++ ARD+LA+ K + + G+ P
Sbjct: 240 PPDPDHYLRQFTSSL--GVSEETERVARDVLAAAKEEQLHVGKNP 282
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L +++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 245 L--DLSEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSE 299
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A +I+ + + +G+ P+G
Sbjct: 238 --DVDKDVETKAVEIIDETTQQGLHSGKSPTGF 268
>gi|407462691|ref|YP_006774008.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046313|gb|AFS81066.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 323
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 16/195 (8%)
Query: 44 NAAGQSQLSGNFVRTIQSEYGASR------ERLMEKAFDDMRQMKNALNIGESDEIVHVA 97
+A G+ S N + + SR E+ + KAF + N LN+ E+ + A
Sbjct: 98 DAVGKKMHSNNIRHFSRMRFWDSRSKSNNKEQNLVKAFTVLDAYSNKLNMPENAK--EHA 155
Query: 98 KRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157
Y AV + +G + A+ +Y +C+Q P + + S NIN +L Y +L
Sbjct: 156 AYIYRKAVDKKIIRGNSIPSMMAASVYASCKQLGIPRSVDEISKITNINRKKLLRSYKRL 215
Query: 158 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+ L I +VD + + ++K A IL K++ I G+ P
Sbjct: 216 VKKLEI--------KVDSTGINYVSKISSSLSVSEKTSRLANKILHDAKQEKIHVGKNPI 267
Query: 218 GLCGAALYVSALTHG 232
G+ A++Y+SA+ HG
Sbjct: 268 GVTAASIYLSAINHG 282
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L +++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 245 L--DLSEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSE 299
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 189 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 244 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSE 298
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G +I A Y AV RN +GR E + + +Y ACRQ + P L + S +IN
Sbjct: 131 LGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISKAADIN 190
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
++G Y L + L + LK P ++ +F ++L +K V + +I+ +
Sbjct: 191 KKKIGKAYRHLAKELKLN-----LKPTTPYSYVSQFCNKL--NLDKDVIIKSEEIIRRVN 243
Query: 207 RDWITTGRKPSGL 219
I+ G+ P+G+
Sbjct: 244 ETGISAGKGPTGV 256
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALDQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEGIPRSLEEVTGVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A +I+ + +G+ P+G
Sbjct: 240 --DVDKNVESKAIEIIDETTTQGLHSGKSPTGF 270
>gi|448324263|ref|ZP_21513695.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619194|gb|ELY72738.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 321
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 54 NFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
N +RT + + S+ER +++A ++ +M +AL + E A Y AV +
Sbjct: 115 NRLRTWNERFTSTNSQERNLKQALGELERMASALGLPEP--CRETAAIIYRQAVDADLLL 172
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR E V + LY A RQ P F + ++ + Y QL L + +
Sbjct: 173 GRSIEAVATASLYAAARQHGTPRTFSTFESVSRVDEPPIKRAYRQLSSDLGLE-----MA 227
Query: 172 QVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 216
DP +L +FT L G +++ ARD+LA+ K + + G+ P
Sbjct: 228 PPDPDHYLRQFTSSL--GVSEETERVARDVLAAAKEEQLHVGKNP 270
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 26/245 (10%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGN------FVRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + A + LS N +RT + S+ER +++A ++ +
Sbjct: 90 MMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 149
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL + ++ + A Y A+ N GR E V + LY A RQ + P L + +
Sbjct: 150 MASALGLPKT--VRETASVIYRRALEENLLPGRSIEGVATASLYAAARQANTPRSLDEMT 207
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ EL Y Y+ E N+ +K DP +L +F L + + AR
Sbjct: 208 AVSRVEKMELTRTYR------YVVRELNLEIKPADPESYLPRFVSDLELSDDTE--RRAR 259
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELH 252
+++ S + I +G+ P GL AA+Y +AL K ++S++ + R KEL
Sbjct: 260 ELIVSARDQGILSGKSPVGLAAAAVYAAALLTNEKVTQSEVSDVANISEVTIRNRYKELL 319
Query: 253 EGVAA 257
E V A
Sbjct: 320 ESVDA 324
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 15/215 (6%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R ER M +AF D+ + ++ ++ I +AK+
Sbjct: 101 TVISYKDGGSGVARELQRAASRSQNTRSERNMLQAFRDISSWCDQFSLPKT--ISDIAKQ 158
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y A +G+ + V A+C+++ACRQ P + ++ LG Y L +
Sbjct: 159 LYKRADEEKLLRGKSLDAVIAACIFIACRQAHVPRTFREMCTLTHVPKKTLGQCYKTLEK 218
Query: 160 VLYIADE-SNVLKQ----------VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD 208
+A SN Q +P L ++ + L G V TA +I++ K
Sbjct: 219 AFNLAAAGSNNTTQNSRPDPAATTTNPQDLLARYCNHL--GLPHLVQSTASEIISIGKEH 276
Query: 209 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIIED 243
T GR P + ++Y + G+ + D+ E+
Sbjct: 277 AFTDGRSPISIASGSIYFTTQLLGVPMTMKDLCEN 311
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 16/200 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 134 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + +N E+G Y + Q L + ++ V+P ++ +F L
Sbjct: 192 RMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELD 246
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI-----I 241
LP ++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ +
Sbjct: 247 LP---EEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQV 303
Query: 242 EDFMARKKELHEGVAANLPN 261
+ R + + A LPN
Sbjct: 304 TEVTIRNRYQEQISAMGLPN 323
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 145 ERNLAFALSELDRMASAL--GLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAAC 202
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 203 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 256
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 257 TLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVAE 310
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RER AF ++R++ AL++ + +I A + A + + +GR E A+C+Y A
Sbjct: 123 RERNQVYAFTEIRRLTGALSLPK--QIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAA 180
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + + ++ E A Y L + L + + +DP+ +L +F L
Sbjct: 181 CRVAGVARTIEEITDIAKATSAEQRAAYTALNRELGLP-----IGPIDPAQYLPRFASEL 235
Query: 187 -LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
LP ++ C+ I A I GR PSG+ A LY +A G + ++
Sbjct: 236 ELPSNIERRACEYISMITA----QGIGAGRNPSGVAAACLYTAARDIGFELTQ 284
>gi|448331622|ref|ZP_21520885.1| transcription initiation factor TFB [Natrinema versiforme JCM
10478]
gi|445609188|gb|ELY62997.1| transcription initiation factor TFB [Natrinema versiforme JCM
10478]
Length = 296
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 20/220 (9%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G +LSG R + + + + ER + ++R++ +
Sbjct: 67 DRGLSTEIGHGTDAHG-DELSGQKRRQLARMRREQTRGRWRSKAERNLAHGLGEVRRLAS 125
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + ES I A + + A + +GR E + A+ +Y ACR L+ D S
Sbjct: 126 ALELSES--IRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVDDVSEMA 183
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTARDIL 202
+ + VY L + L + E V PS+F+ + +D P ++ AR +
Sbjct: 184 RVAESRVTNVYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQRARALA 235
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ +TTG P+G A LY + G +SD+ E
Sbjct: 236 EQAEERGVTTGVHPAGFAAACLYKAGQEQGKWVMQSDVAE 275
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + ++ E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELD 244
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
LP ++V A +I+ + + +G+ P+G
Sbjct: 245 LP---EEVQLKANEIITTTAEQGMLSGKSPTG 273
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + +G+ P+G
Sbjct: 238 --DVSKEVETRAVEIINQTTDKGLHSGKSPTGF 268
>gi|407462994|ref|YP_006774311.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046616|gb|AFS81369.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 309
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G SD I+ A FY A+ RN +GR + V A+CLY AC+ L + + I
Sbjct: 134 LGLSDTIIERASLFYRKAIKRNLIRGRTVKSVAAACLYAACKDLEHDRSLTEIAIQFVIK 193
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+ Y L + L + V+P + K T +L ++K A IL +
Sbjct: 194 RKEISRAYRILFKELGFT-----VNVVNPIKLISKITSKLEL--SEKTIRKATQILTVAQ 246
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
IT G+ P L + +Y + + G S++ + E
Sbjct: 247 DAGITVGKNPEILAASVIYAACVITGELKSQTQVAE 282
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + ++ E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELD 244
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
LP ++V A +I+ + + +G+ P+G
Sbjct: 245 LP---EEVQLKANEIITTTAEQGMLSGKSPTG 273
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ + E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEDIPRSLEEVTSVARVEQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G + V A +I+ + +G+ P+G
Sbjct: 240 DVGTD--VETKAIEIIDRTTEQGLHSGKSPTGF 270
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 68 ERLMEKAFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
ER + A ++ +M +AL NI E+ +V Y AV +N +GR E V A+ L
Sbjct: 146 ERNLAFALSELDRMASALGLPRNIRETSAVV------YRKAVTKNLIRGRSIEGVAAAAL 199
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y ACRQ P L + + ++ E+G Y + + L + L P ++ +F
Sbjct: 200 YAACRQNGVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFC 254
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++
Sbjct: 255 SGLNLKG--EVQSRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREV 309
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ES + A Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPES--VRETASVIYRRALDEDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 189 AARQAGTPRSLDEIAAVSRVGKDEIARTYRYVVRELSLE-----IQPADPESYVPRFVSD 243
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L LP +V AR +L + K + +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 244 LDLP---DEVERRARQLLGTAKEQGVHSGKSPVGLAAAAVYAASLLANEKVTQSEVSE 298
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 34 NFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESD 91
++ E + ++ + + + N +R Q+ + ER ++ A ++ +M +AL + +
Sbjct: 95 DWKNEDAYGRSISSEKRSQMNRLRKWQTRIRTKDAGERNLQFALSEIDRMASALGVPRA- 153
Query: 92 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151
+ V Y A+ + +GR E V + LY CRQ+ P L + + I E+
Sbjct: 154 -VREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEITEVSRIERIEIS 212
Query: 152 AVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDW 209
Y YI++E + L+ +DP ++ +FT +L LP ++V A +I+ D
Sbjct: 213 RTY------RYISNELGLELRPIDPKQYVPRFTSKLELP---QEVETKANEIIDETA-DP 262
Query: 210 ITTGRKPSGL 219
+ +GR PSG
Sbjct: 263 LLSGRGPSGF 272
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 17/199 (8%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMR 79
+ + D +T+ + K+A GQS S N +R Q + ER ++ A ++
Sbjct: 93 QTMHDKGLTTQIDWKDKDAYGQSISSDKRSQMNRLRKWQERIRTKDAGERNLQFALSEID 152
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + S + VA Y A+ + +GR E + LY ACRQ+S P L +
Sbjct: 153 RMASALGVPRS--VREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEV 210
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ + E+G Y L Q L + +K DP ++ +F L ++ V R
Sbjct: 211 AEVARVEQKEIGRTYRYLSQELGLE-----IKPADPKEYVPRFCSEL--ALSEAVEQKTR 263
Query: 200 DILASMKRDWITTGRKPSG 218
+I+ + + +G+ P+G
Sbjct: 264 EIIDVTAEEGMLSGKSPTG 282
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 245 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSE 299
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RER AF ++R++ AL++ + +I A + A + + +GR E A+C+Y A
Sbjct: 123 RERNQVYAFTEIRRLTGALSLPK--QIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAA 180
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + + ++ E A Y L + L + + +DP+ +L +F L
Sbjct: 181 CRVAGVARTIEEITDIAKATSAEQRAAYTALNRELGLP-----IGPIDPAQYLPRFASEL 235
Query: 187 -LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
LP ++ C+ ++ + I GR PSG+ A LY +A G + ++
Sbjct: 236 ELPSDIERRACE----YISMITAQGIGAGRNPSGVAAACLYTAARDIGFELTQ 284
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 245 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSE 299
>gi|448567682|ref|ZP_21637607.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445711680|gb|ELZ63470.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 342
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 17/222 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQSQLSGNF-----VRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + K+A G S SG +RT + S+ER +++A ++ +
Sbjct: 98 MMHDKGLSTNIGWQNKDAYGNSLSSGQRQKMQRLRTWNERFRTRDSKERNLKQALGEVER 157
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL G D + A Y A+ + GR E V + +Y A RQ P L +
Sbjct: 158 MGSAL--GLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQAGVPRSLDEVR 215
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
++ EL Y + + L + +K DP+ +L +F L V AR
Sbjct: 216 RVSRVDKMELTRTYRYVSRELGLD-----MKPADPAQYLPRFVSEL--DVTDDVERRARS 268
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+L + KR I +G+ P GL AA+Y L + ++S++ E
Sbjct: 269 LLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSE 310
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L +++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S + E
Sbjct: 245 L--DLSEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSE 299
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L L +++ AR++L S + + + +G+ P GL AA+Y +AL K +++D+ E
Sbjct: 245 LDLSDETERM---ARELLDSAREEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSE 299
>gi|312380563|gb|EFR26521.1| hypothetical protein AND_07353 [Anopheles darlingi]
Length = 156
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTIQSEYGA--------SRERL 70
C CG VLED+ +E F +NA G S G FV R + YG SRE
Sbjct: 25 CTNCGSVLEDNIIVSEVQFEENAHGASSAVGQFVASDSRGGATSYGKFPVSIGTESREVT 84
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
+ KA + + + L + ++ + A F+ +A+ RN T+GRR + A+C ++
Sbjct: 85 LRKARQGIAMLCSQLRL--NNHCIETACNFFKMALIRNLTRGRRNTHIYAACGHI 137
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
+ER +++A ++ +M +AL + +S + A Y A+ N GR E V + L++A
Sbjct: 129 KERSLKQALSEIERMSSALGLPKS--VRETAGVIYRRALEENLLPGRSVEGVSTAALHIA 186
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDR 185
RQ + P L + I + Y Y+A E + L DP +L +F
Sbjct: 187 SRQANIPRSLDTLTEVSRIGKLPITRTYQ------YVARELEINLPPADPLEYLPRFVSA 240
Query: 186 LLPGGNKKVCDTARDILASMKRDWIT--TGRKPSGLCGAALYVSAL 229
L + +V +R++L ++ D + +G+ P GL AA+Y +L
Sbjct: 241 L--DRSDEVERRSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSL 284
>gi|386875848|ref|ZP_10118004.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806350|gb|EIJ65813.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 307
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 11/168 (6%)
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
AFD + ++++ L++ SD + A Y A+ R T GR V A+ +Y+ACR
Sbjct: 124 AFDFLERLQDKLSV--SDSVKETAAHIYRKALERKITSGRSIYSVVAASMYIACRNTHTL 181
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 192
L D + NI + Y + + L + + V+ S F+ K ++ L + G K
Sbjct: 182 RNLSDIATATNIKRTNIAQSYRAIVKQLDLK-----IPLVNQSDFILKISNNLKISAGTK 236
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ A +IL + GR P+G+ A++Y S + FS+ I
Sbjct: 237 NL---AIEILKKATELDMIAGRDPAGMASASIYFSNVVRHDGFSQIQI 281
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 17/222 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQS---QLSGNFVRTIQ----SEYGASRERLMEKAFDDMRQ 80
+L D ST+ + K+ +G+S + F R + S + ER + A ++ +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + L++ +S I A Y AV +GR E V A+ LY ACRQ S P L +
Sbjct: 130 MASRLDLPKS--IREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEIG 187
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
E+G Y + + L + + P ++ +F L + +V A +
Sbjct: 188 EASRTGRKEIGRTYRFMVRELKMK-----IPPTKPEDYIPRFCSGL--DLDAEVQAKAYE 240
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
++A+ + +T+GR P+G+ + +Y++++ G + ++ ++ E
Sbjct: 241 LIAAAQERELTSGRGPTGIAASIIYIASVLCGKRRTQREVAE 282
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L +++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S + E
Sbjct: 245 L--DLSEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSE 299
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 68 ERLMEKAFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
ER + A ++ +M +AL NI E+ +V Y AV +N +GR E V A+ L
Sbjct: 145 ERNLAFALSELDRMASALGLPRNIRETSAVV------YRKAVTKNLIRGRSIEGVAAAAL 198
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y ACRQ P L + + ++ E+G Y + + L + L P ++ +F
Sbjct: 199 YAACRQNGVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFC 253
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++
Sbjct: 254 SGLSLKG--EVQSRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREV 308
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMAGTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASE 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSE 292
>gi|355693620|gb|EHH28223.1| hypothetical protein EGK_18611 [Macaca mulatta]
gi|355778900|gb|EHH63936.1| hypothetical protein EGM_17014 [Macaca fascicularis]
Length = 59
Score = 55.1 bits (131), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 46
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Query: 44 NAAGQSQLSGNFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFY 101
+A +SQL +RT + A ++ER ++ AF ++ +M +AL++ E A Y
Sbjct: 117 SARKRSQL--RRLRTWNERFTAKTAQERNLKHAFGELERMASALDLPEP--CRETAAVLY 172
Query: 102 GIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161
AV GR E + +CLY A RQ P F + + + + Y L + L
Sbjct: 173 RRAVDEELLPGRSIEAMATACLYAAARQHGTPRTWATFESVSRVEIGRVQRAYRYLSREL 232
Query: 162 YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 220
+ + DP +L +F L + + AR+IL + K I G+ P+GL
Sbjct: 233 GLE-----IAPADPLQYLGQFASAL--SISDEAEHVAREILETAKEKGIHVGKSPAGLA 284
>gi|448335856|ref|ZP_21524987.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615482|gb|ELY69129.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 18/217 (8%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 79 DRGLSTEIGRGTDANG-NELSGQKRRRLTRMRREQTRGRFQSKAERNLAHGLSEVRRISS 137
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + E+ I A + + A + +GR E + A+ +Y ACR +P L D +
Sbjct: 138 ALELSET--IRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTLDDITESA 195
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L L + + V PS F+ + L + ++ AR +
Sbjct: 196 RVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQRARQLAE 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ + TTG +PSG A LY + G ++SD+
Sbjct: 249 ASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDV 285
>gi|399578474|ref|ZP_10772221.1| transcription initiation factor TFB [Halogranum salarium B-1]
gi|399236360|gb|EJN57297.1| transcription initiation factor TFB [Halogranum salarium B-1]
Length = 318
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 25/237 (10%)
Query: 33 HNFSTEATFVKNAAGQ-SQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKN 83
H+ T ++ G+ S LSG R + +S + + ER + ++R++ +
Sbjct: 80 HDRGLSTTIGRSTDGKGSTLSGAKRRQLARMRREHSRSRFQSKAERNLAHGLGEVRRITS 139
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL +G S + + A + + A + GR E + A+ +Y CR +P D +
Sbjct: 140 ALGLGGS--VRNQACQLFRSAQREDLLLGRSIEAIAAASVYGICRCHGRPVARDDLVDVA 197
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
++ + Y L + L + + V P L K L G K+V AR +
Sbjct: 198 RVDHSGVTNAYKTLNRELGLPTQP-----VAPQSLLPKLASEL--GVEKRVRRRARTLAE 250
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI-------IEDFMARKKELHE 253
+ I G +PSG+ A LY+++ HG +++ + AR+ EL E
Sbjct: 251 RVHETSIANGYQPSGVAAACLYLASREHGESLTQAQVAAAAGTTPATLRARRAELTE 307
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 145 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 202
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 203 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 256
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 257 TLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 310
>gi|292653590|ref|YP_003533486.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291534|ref|ZP_21482424.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291369420|gb|ADE01648.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445574177|gb|ELY28685.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 308
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 25/241 (10%)
Query: 15 RPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSE 62
R YD + C +R G L D STE +A G ++LSG +
Sbjct: 59 RAYDKEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NELSGKKRRRLARMRREQTRGR 116
Query: 63 YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
+ + ER + ++R++ +AL + S+ + A + + A + +GR E + A+
Sbjct: 117 WRSKAERNLAHGLGEVRRLASALEL--SNSVRDQACQLFRSAQNEDLLRGRSIEAIAAAS 174
Query: 123 LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF 182
+Y ACR L+ D S + + Y L + L + E V PS+F+ +
Sbjct: 175 VYGACRCNGLSRLVDDVSEVARVAESRVTNAYKTLNEALGLPAEP-----VLPSMFVPRL 229
Query: 183 -TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
+D P ++ AR + + +TTG P+G A LY + G ++ D+
Sbjct: 230 ASDLECP---DEIRQRARTLAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQRDVA 286
Query: 242 E 242
E
Sbjct: 287 E 287
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 143 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 200
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 201 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 254
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 255 TLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 308
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSE 292
>gi|14195251|sp|Q9P9I7.1|TF2B_METTL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|6735522|emb|CAB69073.1| archaeal transcription factor B [Methanothermococcus
thermolithotrophicus]
Length = 339
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLTPTNPIDYVPRFASELKLPG---EVESKAISILQKANEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ HG + ++ ++
Sbjct: 289 GVAAAAIYIASVLHGTRRTQREV 311
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 18/202 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQN--VRETASVIYRRALGDDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + + EL Y + + L + ++ DP +L +F
Sbjct: 189 AARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS------D 239
L G +++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S D
Sbjct: 244 L--GLSEETQRQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVAD 301
Query: 240 IIE-DFMARKKELHEGVAANLP 260
I E R KEL E A +LP
Sbjct: 302 ISEVTIRNRYKELLE--AEDLP 321
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 160 SKERNLKQALGEVDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 217
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 218 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 272
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 273 L--GLSDEAERRARSLLDTAKAQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSE 327
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER +++A ++ +M +AL G D + A Y A+ GR E V S LY
Sbjct: 137 SRERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 195 AARQAGTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPVSYVPRFASD 249
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L ++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ E
Sbjct: 250 LDLSDETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSE 304
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSE 292
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ S P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 188 SARQASTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEQYVPRFVSD 242
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ E
Sbjct: 243 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSE 297
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 144 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAAC 201
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ + P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 202 RQCNVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 255
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 256 TLKG--EVQSRAVEILRQAGEKELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 309
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 143 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 200
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 201 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLT 255
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 256 LKG--EVQSRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 308
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + ++ E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELD 244
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
LP ++V A +I+ + + +G+ P+G
Sbjct: 245 LP---EEVQLKANEIINTTAEQGMLSGKSPTG 273
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 146 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 204 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 258 QLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 311
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 47 GQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
G S L+ R + ER + +AF D+ + ++ ++ I +AK+ Y +
Sbjct: 107 GGSGLARELQRAASRANSSRSERNLLQAFRDISNWCDQFSLPKT--ISDIAKQLYKRSDE 164
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
+G+ E V A+C+++ACRQ P + N +++ LG Y L Q +
Sbjct: 165 EKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPG 224
Query: 167 SNVLKQ-VDPS------IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
++ + + PS L ++ + L LP + +C DI+ + I GR P
Sbjct: 225 ASQDRHAITPSGTTGAEDLLVRYCNHLALPPNFQPIC---ADIIVKARELGIADGRSPVS 281
Query: 219 LCGAALYVS 227
+ G A+Y +
Sbjct: 282 IAGGAIYFT 290
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 15/204 (7%)
Query: 47 GQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
G S ++ R + ER + +AF D+ + ++ ++ I +AK+ Y +
Sbjct: 107 GGSGIARELQRAASRSQASRSERNLLQAFRDIASWCDQFSLPKT--ISDIAKQLYKRSDE 164
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
+G+ + V A+C+++ACRQ P + N +++ LG Y L Q +
Sbjct: 165 EKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPG 224
Query: 167 SNVLKQ---------VDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKP 216
++ P L ++ + L LP + +C DI+ + I GR P
Sbjct: 225 ASATTDRHLTTPAAARGPEDLLVRYCNHLDLPPNVQPICS---DIIIQARELGIADGRSP 281
Query: 217 SGLCGAALYVSALTHGLKFSKSDI 240
+ G A+Y + G S DI
Sbjct: 282 VSIAGGAIYFTCHLLGKVKSAKDI 305
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALSEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVERMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 -DLSEEVQAKANEIIDTTAEQGMLSGKSPTG 273
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALDQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y Y+ADE ++ L+ +P F+ +F L
Sbjct: 186 RKEGIPRSLEEVTAVSRVDQREIGRTY------RYVADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A +I+ + +G+ P+G
Sbjct: 240 --DVDKDVESKAIEIIDETTNQGLHSGKSPTGF 270
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 17/222 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
++ D ST + A LS + TI+ S+ ++R + +A ++ +
Sbjct: 51 LIHDMGLSTVINPINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTR 110
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ I S ++ A Y A+ + +GR + A+ +Y ACR P L D +
Sbjct: 111 IKD--KIALSTNVLEKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVA 168
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ N+ ++ Y L L + + V+ + + + +L ++K+ A
Sbjct: 169 DAANVKRKDIARCYRLLHHELELK-----MPVVNSIQCISRISSKL--ELSEKIKRHAIK 221
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+L + + + G+ P GL ALY++ L HG ++ D+ E
Sbjct: 222 VLQEAQNNKESAGKDPMGLAATALYIACLKHGGSITQRDLAE 263
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G + + AR +L + K + +G+ P GL AA+Y ++L K ++S++
Sbjct: 246 L--GLSDEAERRARSLLNTAKEQGLHSGKSPVGLAAAAVYAASLLVNEKVTQSEV 298
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
+ D +T + A LS + TI+ S+ +R +AF ++ +
Sbjct: 67 TMHDMGLATIINPINKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNR 126
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ L I SD ++ A Y A+ + +GR + A+ LY ACR S P L D
Sbjct: 127 LKDKLAI--SDSVIEKAAYIYRKALEKGLVRGRSISALMAAALYAACRDTSTPRNLKDVE 184
Query: 141 NYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
NI ++ Y L + L + D + ++ I + + T R
Sbjct: 185 QAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY---------- 234
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
A +L + + ++ G+ P GL AALY+S + +G ++ DI E
Sbjct: 235 -ATKVLKMAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAE 279
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMAGTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASD 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSE 292
>gi|448423775|ref|ZP_21582108.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445683032|gb|ELZ35437.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 396
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 9/192 (4%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
L N T Y + ER +++A ++ +M +AL G D + A Y A+ +
Sbjct: 188 LPDNVRETASVIYRRALERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLL 245
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
GR E V + LY A RQ P L + + + E+ Y + + L + +
Sbjct: 246 PGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----I 300
Query: 171 KQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+ DP ++ +F L G + + AR +L + K I +G+ P GL AA+Y ++L
Sbjct: 301 QPADPESYVPRFASDL--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLL 358
Query: 231 HGLKFSKSDIIE 242
K ++S++ E
Sbjct: 359 VNEKVTQSEVSE 370
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + +Y
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASVYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ + E+ Y + + L + ++ DP ++ +FT
Sbjct: 188 AARQAGVPRSLDELTDVSRVEKDEIARTYRYVVRELGLE-----VRPADPESYVPRFTSD 242
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L +++ AR++LA+ K + + +G+ P GL AA+Y ++L K +++ + E
Sbjct: 243 L--ELSEEAERRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSE 297
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 188 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 242
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ E
Sbjct: 243 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSE 297
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L S +++ + +G+ P G
Sbjct: 246 LDLSDETERM---ARELLESARQEGVHSGKSPVG 276
>gi|433593095|ref|YP_007282581.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308133|gb|AGB33943.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 18/217 (8%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 96 DRGLSTEIGRGTDANG-NELSGQKRRRLTRMRREQTRGRFQSKAERNLAHGLSEVRRISS 154
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + E+ I A + + A + +GR E + A+ +Y ACR +P L D +
Sbjct: 155 ALELSET--IRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTLDDITESA 212
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L L + + V PS F+ + L + ++ AR +
Sbjct: 213 RVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQRARQLAE 265
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ + TTG +PSG A LY + G ++SD+
Sbjct: 266 ASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDV 302
>gi|448431679|ref|ZP_21585190.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445687455|gb|ELZ39738.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 238
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 45 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYA 102
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 103 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 157
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 158 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSE 212
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + +G+ P+G
Sbjct: 238 --DVSKEVETRAVEIIDQTTDLGLHSGKSPTGF 268
>gi|448581117|ref|ZP_21645107.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445733879|gb|ELZ85439.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 342
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 17/220 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQSQLSGNF-----VRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + K+A G S SG +RT + S+ER +++A ++ +
Sbjct: 98 MMHDKGLSTNIGWQNKDAYGNSLSSGQRQKMQRLRTWNERFRTRDSKERNLKQALGEVER 157
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL G D + A Y A+ + GR E V + +Y A RQ P L +
Sbjct: 158 MGSAL--GLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQAGVPRSLDEVR 215
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
++ EL Y + + L + +K DP+ +L +F L V AR
Sbjct: 216 RVSRVDKMELTRTYRYVSRELGLD-----MKPADPAQYLPRFVSEL--DVTDDVERRARS 268
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+L + KR I +G+ P GL AA+Y L + ++S++
Sbjct: 269 LLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEV 308
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L S +++ + +G+ P G
Sbjct: 246 LDLSDETERM---ARELLESARQEGVHSGKSPVG 276
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L S +++ + +G+ P G
Sbjct: 246 LDLSDETERM---ARELLESARQEGVHSGKSPVG 276
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 9/173 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 149 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 206
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ + P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 207 RQCNVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPGDYVPRFCSGL- 260
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++
Sbjct: 261 -GLKGEVQSRAMEILKQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREV 312
>gi|448343761|ref|ZP_21532680.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
gi|445622394|gb|ELY75852.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
Length = 308
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 25/243 (10%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H R YD + C +R G L D STE +A G +++SG
Sbjct: 54 HGPEWRAYDEEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NEISGKKRRRLARMRRE 111
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ER + ++R++ +AL + SD + A + + A + +GR E
Sbjct: 112 QTRGRWRSKAERNLAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEG 169
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ D S + + Y L + L + E V PS+
Sbjct: 170 IAAASVYGACRCNGLSRLVDDVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSM 224
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 225 FVPRLASDLECP---DEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLT 281
Query: 237 KSD 239
+S+
Sbjct: 282 QSE 284
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASD 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSE 292
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 126 AKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYA 183
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + ++ E+ Y Y+ E N+ ++ DP ++ +F
Sbjct: 184 AARQAGTPRSLDELETVSRVDKDEISRTYR------YVVRELNLEIEPADPEQYVPRFAS 237
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G N + AR +L + K I +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 238 EL--GLNDESERHARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSE 293
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K+V A +I+ + +G+ P+G
Sbjct: 238 --DVSKEVETRAVEIIDQTTDLGLHSGKSPTGF 268
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 135 AKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYA 192
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + ++ E+ Y Y+ E N+ ++ DP ++ +F
Sbjct: 193 AARQAGTPRSLDELETVSRVDKDEISRTYR------YVVRELNLEIEPADPEQYVPRFAS 246
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G N + AR +L + K I +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 247 EL--GLNDESERHARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSE 302
>gi|448736840|ref|ZP_21718923.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445805608|gb|EMA55811.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 210
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
+R+R ++ A ++ +M +AL + ES + A Y A+ N GR E V ++ LY
Sbjct: 16 ARDRNLKHALGEISRMASALGVPES--VRETAGVIYRRALEENLLPGRSVEGVASAALYA 73
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ S P L + N + + Y Y++ E N+ + DP+ ++ +F
Sbjct: 74 ATRQASIPRSLDEIGNVSRVETVAIMRTY------RYVSRELNLTIPPSDPTDYVPRFAS 127
Query: 185 RLLPGGNKKVCDTARDIL 202
+L G ++V ARDIL
Sbjct: 128 KL--GAPEEVERAARDIL 143
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 139 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 197 AARMAGTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASD 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 252 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSE 306
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 146 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 204 RQCSVPRTLDEVAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 258 NLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 311
>gi|448564209|ref|ZP_21635910.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445717196|gb|ELZ68917.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 309
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 18/219 (8%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKN 83
D S+E + ++A G++ LSG + + + + + ER + ++R++
Sbjct: 80 DRGLSSEIGYKRDANGRT-LSGKKRQQVARMRREQSRGRFQSKAERNLAHGLGEVRRIAG 138
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + ES A R + A + + +GR E + A+ +Y CR L + ++
Sbjct: 139 ALELSESTR--DQACRLFRSAQSEDLLRGRSIEAIAAASVYGICRCNRLMRTLEEIADLA 196
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L L + V P F+ + L G +++ AR I
Sbjct: 197 RVENQRVVNAYKTLNTELGLP-----TPPVRPRDFIPRLVSEL--GVPEEISRRARSIAM 249
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
++ +TTG P+G GA LY H L +SD+ +
Sbjct: 250 EAEQLGVTTGCNPAGFAGACLYWVGCDHALHLRQSDVAQ 288
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 146 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 204 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 258 NLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 311
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + +Y
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASVYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ + E+ Y + + L + ++ DP ++ +FT
Sbjct: 190 AARQAGVPRSLDELTDVSRVEKDEIARTYRYVVRELGLE-----VRPADPESYVPRFTSD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L +++ AR++LA+ K + + +G+ P GL AA+Y ++L K +++ + E
Sbjct: 245 L--ELSEEAERRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSE 299
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 102/258 (39%), Gaps = 54/258 (20%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLE-------------------------------- 31
C C P +++L C+ CG +LE
Sbjct: 27 CPECDSQALLRSPDETELSCEDCGLLLEEKRIDHGPDWRAFTHQEQQKKSRVGAPTTRTM 86
Query: 32 -DHNFSTEATFV-KNAAGQSQLSG------NFVRTIQSEYGASR--ERLMEKAFDDMRQM 81
D +T + K+A G+S LS N +R Q+ S ER ++ A + +M
Sbjct: 87 HDKGLTTSIDWKNKDAHGRS-LSADKRSQMNRLRKWQTRIRTSDAGERNLQFALSETDRM 145
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ L I S + VA Y A+ R+ +GR E V LY ACR + P L + +
Sbjct: 146 ASGLGIPRS--VREVASVLYRRALERDLIQGRSIEGVATGTLYAACRLEGMPRSLEEVAM 203
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
++ E+G Y YIA E + K VDP ++ +F L + V A +
Sbjct: 204 VSRVDRKEIGRTY------RYIAKELELGTKPVDPKQYVPRFCSEL--ELSPTVQAKASE 255
Query: 201 ILASMKRDWITTGRKPSG 218
I+ + + I +G+ P+G
Sbjct: 256 IIDTTAKKGILSGKSPTG 273
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 53/279 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLE-------------------------------- 31
CS C P + C+ CG V+E
Sbjct: 36 CSECGSSDVVQHPSPGERICENCGLVIEEGMIDSGPEWRAFNHQERQNKSRVGAPTTQTI 95
Query: 32 -DHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMRQMK 82
D +T+ + K+A G+S S N +R Q+ + ER ++ A ++ +M
Sbjct: 96 HDKGLTTQIDWKNKDAYGRSISSKKRSQMNRLRKWQTRIRTKDAGERNLQFALSEIERMA 155
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
+AL + ++ + V Y A+ + +GR E V + LY CRQ+ P L + +
Sbjct: 156 SALGVPKA--VREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEVTEV 213
Query: 143 LNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
I E+ Y YI++E + L +DP ++ +FT +L +++V A++I
Sbjct: 214 SRIERIEISRTY------RYISNELGLELLPIDPKQYVPRFTSKL--DLSQEVETKAKEI 265
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ D + +GR PSG AA+Y + L K ++ D+
Sbjct: 266 IDETA-DPLLSGRGPSGFAAAAIYAATLLCNEKRTQKDV 303
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 52/281 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLE-------------DHN-------FSTEATFVK 43
C C H ++L C CG VLE DH+ TF
Sbjct: 39 CPECGSRQLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 98
Query: 44 NAAGQSQL-----SGNFVRTIQSEYGA----------------SRERLMEKAFDDMRQMK 82
+ G S + ++ R I S+ A + ER + A ++ +M
Sbjct: 99 HDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMA 158
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
+AL G + A Y AV +N +GR E V A+ LY ACRQ S P L + +
Sbjct: 159 SAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEV 216
Query: 143 LNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y +I+ E + L P ++ +F L G +V A +I
Sbjct: 217 SRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG--EVQSRAVEI 268
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 269 LRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 309
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 141 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 198
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + ++ DP ++ +F R
Sbjct: 199 AARQAGNPRSLDEISAVSRVDKMELTRTYRYVIRELKLE-----IQPADPGSYVPRFVSR 253
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G +++ AR++L S KR IT+G+ P G
Sbjct: 254 L--GLSEETQRVARELLDSAKRAGITSGKSPVG 284
>gi|448360606|ref|ZP_21549237.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
gi|445653219|gb|ELZ06091.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
Length = 271
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 16/200 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 82 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 139
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + +N E+G Y + Q L + ++ V+P ++ +F L
Sbjct: 140 RMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELD 194
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI-----I 241
LP ++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ +
Sbjct: 195 LP---EEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQV 251
Query: 242 EDFMARKKELHEGVAANLPN 261
+ R + + A LPN
Sbjct: 252 TEVTIRNRYQEQISAMGLPN 271
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S++R +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 141 SKDRNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 198
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ ++ EL Y + + L + ++ DP ++ +F R
Sbjct: 199 AARQDGNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPESYVPRFVSR 253
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L KR IT+G+ P G
Sbjct: 254 LDLSEETQRL---ARELLDGAKRAGITSGKSPVG 284
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 9/180 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++ + RER AF ++R++ +AL++ + I A + A + +GR E
Sbjct: 97 RARISSKRERNQVYAFTEIRRLTSALSL--PNHIREQACALFESAQNEDLLRGRSLEGFA 154
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR + + + E A Y L + L + + DP+ ++
Sbjct: 155 AACVYAACRVAGIARSVEEVCDVAKATESEHHAAYRALNRDLGLP-----VAPTDPTEYI 209
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L ++ V AR+ +A + D I G+ P G+ A LY +A G +++D
Sbjct: 210 PRFATKL--DLDRDVERRAREYVADAREDGIVAGKNPCGVAAACLYTAARDVGADCTQAD 267
>gi|448307033|ref|ZP_21496934.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445596580|gb|ELY50665.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 298
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER F ++R++ L++ ES A + A + +GR E A+ +Y C
Sbjct: 112 ERNQVYGFTEIRRVNALLSLPESAREQACA--LFKSAQSEGLFQGRSLEGFAAAAIYATC 169
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R +S P + + + + EL Y L + L + +DP+ +L ++ +L
Sbjct: 170 RTRSNPRTIDEITAVARASTDELTTAYDALNRELGLP-----TGPIDPTQYLPRYASKL- 223
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
G + V AR+ L ++ +D + GR PSG+ A LY +A
Sbjct: 224 -GLDTAVERRAREHLTALLQDGVIGGRNPSGVAAACLYKAA 263
>gi|448314502|ref|ZP_21504190.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445594820|gb|ELY48961.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 316
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSSLYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A +I+ + +G+ P+G
Sbjct: 238 --DVSKDVETKAVEIIDRTTDQGLHSGKSPTGF 268
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQ---SQLSGNFVRT----IQSEYGASRERLMEKAFDDMRQ 80
+L D ST+ + K+ +G+ S+ F R +S + ER + A ++ +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + L + +S + A Y AV + +GR E V A+ LY ACRQ P L +
Sbjct: 130 MASRLELPKS--VREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIG 187
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
E+G Y + + L + + P ++ +F L G + +V A +
Sbjct: 188 QASRTGRKEIGRTYRFMVRELKMK-----IMPTGPEDYISRFCSGL--GLDAEVEAKAYE 240
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
++ + + +T+GR P+G+ + +Y++++ G + ++ ++ E
Sbjct: 241 LIKAAQEKELTSGRGPTGIAASIIYIASVLCGKRRTQREVAE 282
>gi|448491685|ref|ZP_21608525.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445692685|gb|ELZ44856.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 209
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 16 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 73
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 74 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 128
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ E
Sbjct: 129 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSE 183
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 24/247 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSG---NFVRTIQSEYGASR-----ERLMEKAFDDMRQ 80
++ D ST+ + +Q++G N +R ++ R ER + A ++ +
Sbjct: 68 MIHDKGLSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDR 127
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M L + + VA Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 128 MAAQLRL--PRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 185
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ ++ E+G Y + + L + L+ P ++ +F D L G + + A++
Sbjct: 186 SVSKVSKKEIGRSYRFMARGLGLN-----LRPTSPIEYVDRFGDAL--GVSARTKKRAKE 238
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHE 253
IL + IT+G+ P+GL AALY++AL G K ++ ++ E R KEL E
Sbjct: 239 ILNEAIKRGITSGKGPTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKELVE 298
Query: 254 GVAANLP 260
+ N+P
Sbjct: 299 KLGINVP 305
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 14/202 (6%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R ER + AF D+ + ++ ++ I +AK+
Sbjct: 99 TIISFRDGGSGMARELQRAASRAQNTRSERNLLSAFRDISSWCDQFSLPKT--ISDIAKQ 156
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y + +G+ E V A+C+++ACRQ P + N +++ LG Y L Q
Sbjct: 157 LYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCYKALEQ 216
Query: 160 VLYIA------DESNVLKQVD--PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWI 210
++ + +N + + P L ++ + L LP +C +DI+ + I
Sbjct: 217 AFNLSPGAQNHNSTNGTQVISTGPEDLLIRYCNHLDLPPYFHGIC---KDIVVEARNRGI 273
Query: 211 TTGRKPSGLCGAALYVSALTHG 232
GR P + G A++ + G
Sbjct: 274 ADGRSPISIAGGAIFFTCFLLG 295
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ES + A Y A+ + GR E V + LY
Sbjct: 152 SKERNLKQALGEIDRMASALGLPES--VRETASVIYRRALNDDLLPGRSIEGVATAALYA 209
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ R S P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 210 SARMASTPRSLDEITSVSRVEKEEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 264
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++
Sbjct: 265 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEV 317
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +A+ + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASAMGVPRS--VREVASVLYRRALEEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R + P L + + + E+G Y YI+ E + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEIAAVSRVERMEIGRTY------RYISKELGLEMQPVDPKKYVPRFCSEL 243
Query: 187 -LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
LP +V A +I+ + + +G+ P+G
Sbjct: 244 ELP---DEVQSKANEIIDTTAEKGMLSGKSPTG 273
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ + E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEDIPRSLEEVTSVARVEQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+ V A +I+ + +G+ P+G
Sbjct: 240 --DVDTDVETKAIEIIDRTTEQGLHSGKSPTGF 270
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 137 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TD 184
A RQ P L + S + E+ Y + + L + ++ DP ++ +F +D
Sbjct: 195 AARQAGTPRSLDEISAVSRVEKDEIARTYRYVVRELGLE-----VQPADPESYVPRFASD 249
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
LP ++ AR +L + K + I +G+ P GL AA+Y +AL K +++D+ E
Sbjct: 250 LELPDETER---RARRLLKTAKDEGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSE 304
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 188 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 242
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ E
Sbjct: 243 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSE 297
>gi|448336058|ref|ZP_21525172.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445630482|gb|ELY83744.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 176
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 11/163 (6%)
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL + S + VA Y A++ + +GR E V SCLY CRQ+ P L + +
Sbjct: 1 MASALGVPRS--VREVASVIYRQALSNDLIRGRSIEGVATSCLYAGCRQEGIPRSLDEVT 58
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ E+G Y YIA E ++ +K DP ++ +F L G K+ A
Sbjct: 59 EVSRVGKKEIGRTY------RYIAKELSLEMKPADPKEYVPRFCSDLEVGEEVKM--KAI 110
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+I+ + +G+ P+G AA+Y ++L K ++ +I E
Sbjct: 111 EIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEIAE 153
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ + E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEDIPRSLEEVTSVARVEQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+ V A +I+ + +G+ P+G
Sbjct: 240 --DVDTDVETKAIEIIDRTTEQGLHSGKSPTGF 270
>gi|448528671|ref|ZP_21620179.1| transcription initiation factor TFB [Halorubrum hochstenium ATCC
700873]
gi|445710411|gb|ELZ62225.1| transcription initiation factor TFB [Halorubrum hochstenium ATCC
700873]
Length = 308
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 25/243 (10%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGNFVRTI------ 59
H R YD + C +R G L D STE +A G ++LSG + +
Sbjct: 54 HGPEWRAYDDEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NELSGQKRQRLARMRRE 111
Query: 60 --QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ER + ++R++ +AL + S+ + A + + A + +GR E
Sbjct: 112 QTRGRWRSKAERNLAHGLGEVRRLASALEL--SNSVRDQACQLFRSAQNEDLLRGRSIEA 169
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ D S + + Y L + L + E V PS+
Sbjct: 170 IAAASVYGACRCNGLSRLVDDVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSM 224
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 225 FVPRLASDLKCP---NEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLT 281
Query: 237 KSD 239
+S+
Sbjct: 282 QSE 284
>gi|448348263|ref|ZP_21537115.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445643361|gb|ELY96413.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 271
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 82 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 139
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + +N E+G Y + Q L + ++ V+P ++ +F L
Sbjct: 140 RMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELD 194
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
LP ++V A +I+ + + +G+ P+G
Sbjct: 195 LP---EEVQAKANEIIDTTAEQGMLSGKSPTG 223
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 122 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSSLYA 179
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 180 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 234
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 235 L--GLSDEPERRARQLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSE 289
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L S +++ + +G+ P G
Sbjct: 245 LDLSDETERM---ARELLESARQEGVHSGKSPVG 275
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y + + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRTLDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R + P L + + ++ E+G Y YI+ E ++ ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEIAAVSRVDRMEIGRTY------RYISKELSLEMQPVDPKKYVPRFCSEL 243
Query: 187 -LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
LP +V A +I+ + + +G+ P+G
Sbjct: 244 ELP---DEVQSKANEIIDTTAEKGLLSGKSPTG 273
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVERMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +I+ + + +G+ P+G
Sbjct: 244 -SLSEEVQAKANEIIDTTAEKGMLSGKSPTG 273
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 175 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEISRVDRKEIGRTYRFISR 234
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 235 ELKIR-----LAPTNPIDYVPRFASELKLPG---EVESKAIAILQKANEKGLTSGRGPTG 286
Query: 219 LCGAALYVSALTHGLKFSKSDI 240
+ AA+Y++++ HG + ++ ++
Sbjct: 287 VAAAAIYIASVLHGTRRTQREV 308
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L S +++ + +G+ P G
Sbjct: 245 LDLSDETERM---ARELLESARQEGVHSGKSPVG 275
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 18/202 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + + Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQN--VRETSSVIYRRALGDDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + + EL Y + + L + ++ DP +L +F
Sbjct: 189 AARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS------D 239
L G +++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S D
Sbjct: 244 L--GLSEETQRQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVAD 301
Query: 240 IIE-DFMARKKELHEGVAANLP 260
I E R KEL E A +LP
Sbjct: 302 ISEVTIRNRYKELLE--AEDLP 321
>gi|47216763|emb|CAG03767.1| unnamed protein product [Tetraodon nigroviridis]
Length = 138
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 98 KRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157
+R G++ R FT G Q A L RQ+ + + + Y QL
Sbjct: 4 QRRMGVSANRGFTAGSPGPQAAAMLQPLHSRQRRPAPHTYHYMAWSGGR--DQPGSYFQL 61
Query: 158 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKP 216
+ ++S+ K +DP +++ +F L G N +V TA ++ MKRDW+ TGR+P
Sbjct: 62 -STRPLFNQSH-FKDLDPCLYIPRFAQMLEFGEKNHEVSMTAMRLVQRMKRDWMHTGRRP 119
Query: 217 SGLCGAALYVSALT 230
SGLCGA + L+
Sbjct: 120 SGLCGAGKSLYTLS 133
>gi|9909700|emb|CAC04512.1| transcription factor II B-related factor [Homo sapiens]
gi|74355580|gb|AAI03860.1| BRF1 protein [Homo sapiens]
Length = 134
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++I
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVI 46
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 22/202 (10%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMR 79
+ + D +T+ + K+A G+S S N +R QS + ER ++ A ++
Sbjct: 83 QTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTKDAGERNLQFALSEID 142
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + S + V Y A+ + +GR E V + LY CRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEI 200
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 197
+ I E+ Y YI++E + L +DP ++ +F+ +L LP ++V
Sbjct: 201 TEVSRIERIEVSRTY------RYISNELGLELLPIDPKQYVPRFSSKLNLP---QEVEAK 251
Query: 198 ARDILASMKRDWITTGRKPSGL 219
A +I+ D + +GR PSG
Sbjct: 252 ANEIIEETA-DPLLSGRGPSGF 272
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + +A Y A+ + GR E V SC+Y
Sbjct: 127 SKERNLKQALGEIDRMASAL--GLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYA 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + ++ E+ Y + + L + +K DP ++ +F
Sbjct: 185 AARQAGVPRSLDEITEVSRVDKSEVARTYRYVVRELSLE-----VKPADPESYVPRFASG 239
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L + AR++L + K + +G+ P G
Sbjct: 240 LELSDEAE--HRARELLRNAKEQGVHSGKSPVG 270
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 122 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYA 179
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 180 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 234
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ E
Sbjct: 235 L--GLSDEPERRARQLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSE 289
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 161 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 218
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 219 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 273
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L S +++ + +G+ P G
Sbjct: 274 LDLSDETERM---ARELLESARQEGVHSGKSPVG 304
>gi|448318490|ref|ZP_21508011.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445599034|gb|ELY53079.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 444
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 110 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 167
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + ++ DP ++ +F
Sbjct: 168 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VQPADPESYVPRFVSD 222
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L L +++ ARD+L S + + + +G+ P GL AA+Y +AL K +++D+
Sbjct: 223 LDLSDETERM---ARDLLDSAREEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDV 275
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 147 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 204
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 205 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLN 259
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 260 LKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 312
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++ER +++A ++ +M +AL G D + A Y A+ + GR E V SC+Y
Sbjct: 127 AKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYA 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ + E+ Y + + L + + DP ++ +F
Sbjct: 185 AARQAGVPRSLDEIADVSRVEKAEIARTYRYVVRELGLE-----VAPADPESYVPRFASD 239
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G + + AR++L + K + +G+ P G
Sbjct: 240 L--GLSDEASHRARELLKTAKDKGVHSGKSPVG 270
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L+I SD ++ A Y A+ + +GR + AS LY AC
Sbjct: 117 DRNFRQAFSELNRLKDKLSI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAAC 174
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFT 183
R S P L D NI ++ Y L + L + D + ++ I + + T
Sbjct: 175 RDTSTPRNLKDVEQAANIKRKDIARCYRLLVKELDLHMPVTDSVQCVARIASKIGIQEKT 234
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
R A +L + + ++ G+ P GL AALY++ + +G ++ DI E
Sbjct: 235 KRF-----------ATKVLKRAQENEVSAGKDPMGLAAAALYLACVKNGEDKTQRDIAE 282
>gi|297619914|ref|YP_003708019.1| transcription factor TFIIB cyclin-like protein [Methanococcus
voltae A3]
gi|297378891|gb|ADI37046.1| Transcription factor TFIIB cyclin-related protein [Methanococcus
voltae A3]
Length = 337
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 176 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 230
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL + +T+GR P+
Sbjct: 231 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILKDAGKKGLTSGRGPT 286
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 287 GVAAAAIYIASVLQGTRRTQREV 309
>gi|335437109|ref|ZP_08559892.1| transcription initiation factor TFB [Halorhabdus tiamatea SARL4B]
gi|334896492|gb|EGM34641.1| transcription initiation factor TFB [Halorhabdus tiamatea SARL4B]
Length = 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 25/243 (10%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H R YD + C +R G L D STE +A G +++SG
Sbjct: 71 HGPEWRAYDDEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NEISGQKRRRLARMRRE 128
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ER + ++R++ +AL + SD + A + + A + +GR E
Sbjct: 129 QTRGRWRSKAERNLAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEA 186
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ D S + + Y L + L + E V PS+
Sbjct: 187 IAAASVYGACRCNGLSRLVDDVSEMARLAESRVTNAYKTLNEELGLPAEP-----VSPSM 241
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 242 FVPRLASDLECP---DEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLT 298
Query: 237 KSD 239
+S+
Sbjct: 299 QSE 301
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 22/202 (10%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMR 79
+ + D +T+ + K+A G+S S N +R QS + ER ++ A ++
Sbjct: 83 QTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTRDAGERNLQFALSEID 142
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + S + V Y A+ + +GR E V + LY CRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIPRSLEEI 200
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 197
+ I E+ Y YI++E + L +DP ++ +F+ +L LP ++V
Sbjct: 201 TEVSRIERIEVSRTY------RYISNELGLELLPIDPKQYVPRFSSKLDLP---QEVEAK 251
Query: 198 ARDILASMKRDWITTGRKPSGL 219
A +I+ D + +GR PSG
Sbjct: 252 ANEIIEETA-DPLLSGRGPSGF 272
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
+RER +++A ++ +M +AL G D I Y A+ ++ +GR E + + LY
Sbjct: 137 NRERNLKQALGEINRMASAL--GCPDPIRETTSVLYRQALEKDMLRGRSVEGMATAALYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
R ++ P L D + ++ E+ Y Y+ADE + + DP ++ +F
Sbjct: 195 GSRLENAPRTLDDVAAVSRVDKIEIERTYR------YLADELELEMTPTDPEAYVARFAS 248
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244
L G + + +R+++ + + +GR P G+ +ALY +A K + D+I+D
Sbjct: 249 EL--GCSDETERRSRELIQAAVEAGVHSGRNPVGIAASALYAAA-----KLTNQDVIQDD 301
Query: 245 MA 246
+A
Sbjct: 302 LA 303
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ GR E V + LY
Sbjct: 153 SKERNLKQALGEVDRMASALGLPEN--VRETASVIYRRALDEELLPGRSIEGVATASLYA 210
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + +N + E+ Y + + L + +K DP ++ +F
Sbjct: 211 AARQAGTPRSLDEITNVSRVGRDEIARTYRYVVRELKLQ-----IKPADPEQYVPRFASD 265
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L + + AR +L S K + +G+ P GL AA+Y ++L K ++ ++
Sbjct: 266 L--DLSDEAERRARQLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEV 318
>gi|448337251|ref|ZP_21526332.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445626359|gb|ELY79707.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 18/217 (8%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 79 DRGLSTEIGRGTDANG-NELSGQKRRRLFRMRREQTRGRFQSKAERNLAHGLSEVRRVSS 137
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L + E+ I A + + A + +GR E + A+ +Y ACR +P L D +
Sbjct: 138 VLELSET--IRDQACQLFRSAQNEDLLQGRSVEAMAAASVYGACRCNGRPRTLDDITESA 195
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L L + + V PS F+ + L + ++ AR +
Sbjct: 196 RVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQRARQLAE 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ + TTG +PSG A LY + G ++SD+
Sbjct: 249 ASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDV 285
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L S +++ + +G+ P G
Sbjct: 246 LDLSDETERM---ARELLESARQEGVHSGKSPVG 276
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ GR E V + LY
Sbjct: 153 SKERNLKQALGEVDRMASALGLPEN--VRETASVIYRRALDEELLPGRSIEGVATASLYA 210
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + +N + E+ Y + + L + +K DP ++ +F
Sbjct: 211 AARQAGTPRSLDEITNVSRVGRDEIARTYRYVVRELKLQ-----IKPADPEQYVPRFASD 265
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L + + AR +L S K + +G+ P GL AA+Y ++L K ++ ++
Sbjct: 266 L--DLSDEAERRARQLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEV 318
>gi|448323082|ref|ZP_21512547.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445600711|gb|ELY54717.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 319
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+ V A +I+ + +G+ P+G
Sbjct: 240 --DVDTHVESKAIEIIDETTTQGLHSGKSPTGF 270
>gi|448732431|ref|ZP_21714711.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445804689|gb|EMA54922.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 283
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S + ER AF ++R+ AL G SD + A + A + +GR E
Sbjct: 92 RSRIASKAERNRVYAFTEIRRQVCAL--GLSDSVRDRACVLFESAQDADLLRGRSLEGFA 149
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ +Y CR L + + EL A Y L + L + +DPS +L
Sbjct: 150 AATIYAVCRTDGVSRTLAEIVTVAKASRDELTAAYDALNRDLGLPT-----GPIDPSEYL 204
Query: 180 HKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT--HGL 233
+F +L LP G V AR+++A + + +GR PSG+ A LY +A HGL
Sbjct: 205 ARFASQLDLPHG---VEARARELVAEGRDRGLVSGRNPSGVAAACLYTAATETDHGL 258
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 13/177 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLY 124
S++R + A ++ M + LN+ ES VH R Y AV + +GR E + ++ LY
Sbjct: 160 SKDRNLGFALSELNSMISNLNLPES---VHEEVARLYEKAVDQGLVRGRSMESIISALLY 216
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFT 183
+ R++ P L + S+ I E+G Y Y+A E + + P ++ +F
Sbjct: 217 IVARKQGTPRTLDEISDASGIEKREIGRAY------RYVARELGLRILPAKPQDYVPRFA 270
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+L G +V AR+IL + + +G+ P+GL AALY++A+ G K ++ ++
Sbjct: 271 GKLQLSG--EVQARARNILEEAREKDLLSGKGPTGLAAAALYIAAVLEGEKRTQREV 325
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 18/202 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + + Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQN--VRETSSVIYRRALGDDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + + EL Y + + L + ++ DP +L +F
Sbjct: 189 AARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS------D 239
L G +++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S D
Sbjct: 244 L--GLSEETQRQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVAD 301
Query: 240 IIE-DFMARKKELHEGVAANLP 260
I E R KEL E A +LP
Sbjct: 302 ISEVTIRNRYKELLE--AEDLP 321
>gi|159905293|ref|YP_001548955.1| transcription initiation factor IIB [Methanococcus maripaludis C6]
gi|226703638|sp|A9A8Q0.1|TF2B_METM6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|159886786|gb|ABX01723.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C6]
Length = 339
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFISD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+
Sbjct: 245 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDV 297
>gi|150402961|ref|YP_001330255.1| transcription initiation factor IIB [Methanococcus maripaludis C7]
gi|189029856|sp|A6VI28.1|TF2B_METM7 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150033991|gb|ABR66104.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C7]
Length = 339
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L L +++ AR++L S +++ + +G+ P G
Sbjct: 245 LDLSDETERM---ARELLESARQEGVHSGKSPVG 275
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 48/278 (17%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEA--------------------T 40
++ CS C +L C CG V+++ A T
Sbjct: 60 VLTCSECGGQQFEEDSSKGELICISCGTVIDEDRIDKSAEYRAFNAEEKEKKARAGQPLT 119
Query: 41 FVKNAAGQS-----------QLSGN------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
+ K+ G S ++SGN +R S++R + A ++ M +
Sbjct: 120 YTKHDMGVSTEIGKGSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMIS 179
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
LN+ ES + R Y +V + +GR E + ++ +Y+ R++ P L + S+
Sbjct: 180 NLNLPES--VHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLDEISDAS 237
Query: 144 NINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDIL 202
I E+G Y Y+A E + + P ++ +F +L G +V AR IL
Sbjct: 238 GIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAGKLQLSG--EVQARARQIL 289
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ + +G+ P+GL AALY++A+ G K ++ ++
Sbjct: 290 KEARERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREV 327
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSGNF-----VRTIQSEYGA--SRERLMEKAFDDMR 79
K++ D ST + K+A G++ S +RT + S+ER +++A ++
Sbjct: 84 KMMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 201
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 198
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 202 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 253
Query: 199 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
R++L S +++ + +G+ P GL AA+Y +AL K +++D+
Sbjct: 254 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDV 295
>gi|448455329|ref|ZP_21594509.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445813931|gb|EMA63904.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 209
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 19/203 (9%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 16 SKERNLKQALGEVDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 73
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 74 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 128
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI----- 240
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++
Sbjct: 129 L--GLSDEAERRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVAN 186
Query: 241 IEDFMARKK-----ELHEGVAAN 258
I + R + E +GVA N
Sbjct: 187 ISEVTIRNRYHELLEAEDGVALN 209
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 19/221 (8%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGN------FVRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + A + LS N +RT + S+ER +++A ++ +
Sbjct: 96 MMHDRGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 155
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL + ES + A Y A+ + GR E + + L+ A R P L + +
Sbjct: 156 MASALGLPES--VRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVA 213
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTAR 199
+ ++ E Y + + L + +K DP+ +L +F +D +P K+ TAR
Sbjct: 214 HVSRVDEEEFERAYRYIVRELSLE-----IKPADPTEYLPRFASDIDVP---KETERTAR 265
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
++L + K I +G+ P GL AALY +A K ++SD+
Sbjct: 266 ELLENAKTVGIHSGKSPVGLAAAALYAAAQLTNEKVTQSDV 306
>gi|45357604|ref|NP_987161.1| transcription initiation factor IIB [Methanococcus maripaludis S2]
gi|74556259|sp|Q6M176.1|TF2B_METMP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|45047164|emb|CAF29597.1| transcription initiation factor B [Methanococcus maripaludis S2]
Length = 339
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 21/201 (10%)
Query: 44 NAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGI 103
NA+ Q + +F +S+ + +R + AF ++ ++K+ L G SD I+ Y
Sbjct: 84 NASIQRLRTWDF----RSQAHSPTKRNLMHAFSELGRLKDKL--GLSDAIMEKTAYLYRK 137
Query: 104 AVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY----LQLCQ 159
A ++ +GR T + A+ +Y +CR+ L D + +I + Y L+L
Sbjct: 138 AHEKHLVRGRSTSSILAAAIYASCRELGASRTLKDVAKATDIKRKAISRSYRILVLELDI 197
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+ +AD + ++ S L + T R+ DT D++ I+ G+ P GL
Sbjct: 198 KVPLADPMKCIAKIANSAKLTEKTKRM-------AMDTMNDLIGK----EISAGKLPMGL 246
Query: 220 CGAALYVSALTHGLKFSKSDI 240
LY+S L +G ++ DI
Sbjct: 247 AATVLYMSCLANGESKTQKDI 267
>gi|16120279|ref|NP_395867.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237645|ref|YP_001690848.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195240|sp|Q9HHH8.1|TF2B5_HALSA RecName: Full=Transcription initiation factor IIB 5; Short=TFIIB 5
gi|10584419|gb|AAG21002.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728422|emb|CAP15236.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 307
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+ + +++ER + ++R++ +AL G +D + A + + A KGR E +
Sbjct: 113 RGRWRSTKERNLGHGLTEIRRIASAL--GLADSVRDQACQLFRTAQNERLLKGRSIEAMA 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ ++ ACR + +L+ D + + + Y L + L + P + L
Sbjct: 171 AASVFGACRCNGESWLIDDVAPMAQVGQNRVENAYTVLNEELGLPT---------PPVSL 221
Query: 180 HKFTDRLLP--GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+F RL G V A +++ ITTG PSG A LY++A H ++
Sbjct: 222 DQFVPRLASDLGCTDVVRRRAEELVVQAVDAGITTGVHPSGFAAACLYMAACVHDAPLTQ 281
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M + L G D + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASGL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 194 AARQAGTPRSLDEIASVSRVDKDEIARTYRYVVRELKLE-----IQPADPEQYVPRFASD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L L +++ AR +L + K + + +G+ P GL AA+Y ++L K ++S++
Sbjct: 249 LDLSDESER---RARKLLQNAKEEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEV 301
>gi|448633189|ref|ZP_21674096.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
gi|445752153|gb|EMA03581.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
Length = 306
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 79 DRGLSTEIGHRTDAHG-NELSGQKRRRLARMRREQTRGRWRSKAERNLAHGLGEVRRLAS 137
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L + ES + A +F+ A + + +GR E + A+ +Y CR +P LL D +
Sbjct: 138 TLELSES--VRDQACQFFRSAQSEDLLRGRSIEAIAAASVYGTCRCNQRPLLLEDIVDAA 195
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L + L + + P+ F+ + L + + A ++ A
Sbjct: 196 RVESSRVTNAYRTLNRELKLP-----TPPMRPTSFIPRLISELEL--DHDIQRRANELAA 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T G +P+G+ A +Y++A G ++S +
Sbjct: 249 CAEETALTNGCQPTGVAAACVYLAAQEQGALITQSTV 285
>gi|346322890|gb|EGX92488.1| transcription initiation protein [Cordyceps militaris CM01]
Length = 347
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGE 89
+E +T F +S+ N +R + ++R + +A+ ++ + A+N+G+
Sbjct: 87 VEGQQLATSVAF-----SESRQHKNLLRVQNNTNQDKQQRGLMQAYKEIVSLCEAINMGQ 141
Query: 90 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 149
+ + + AK + + F KG+ E V A C+++ACRQ + P + N +++ E
Sbjct: 142 N--VSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVSKKE 199
Query: 150 LGAVYLQL 157
+G V+ QL
Sbjct: 200 VGRVFKQL 207
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 137 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ EL Y + + L + ++ DP ++ +F
Sbjct: 195 AARQAGTPRSLDELETVSRVDKMELTRTYRYVVRELKLE-----IEPADPEQYVPRFASE 249
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L + + ARD+L + K+ I +G+ P GL AA+Y +AL K ++S++ E
Sbjct: 250 L--DLSDEAERQARDLLRNAKKAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSE 304
>gi|340623224|ref|YP_004741677.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
gi|339903492|gb|AEK18934.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
Length = 339
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>gi|348532867|ref|XP_003453927.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like
[Oreochromis niloticus]
Length = 452
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 121/276 (43%), Gaps = 47/276 (17%)
Query: 19 SQLCCDRCGKVLEDHNFS------TEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLME 72
+QL C CG V+ + + ++ +F + A + N ++ Q R ++
Sbjct: 25 AQLVCVDCGSVVSEGVLANDPVGGSDVSFSRTTAVAKRPCANLIKGQQRVKAICRILMVN 84
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ +D+ ++ + K F +++ ++ + + C+ ++CRQ +
Sbjct: 85 REIEDLSHTYY--------KMAYEHKAFLKVSL-------QKKDILTGCCVLVSCRQLNW 129
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYI-ADESNVLKQVDPSIFLHKFTDRLLPGGN 191
P + S L+ + +GA+Y ++ + L I A NV ++ +K + +P
Sbjct: 130 PITVGTISCLLDADSMVVGAIYQEMVKNLSIEAPIINVTDVIEAHCHEYKISSLDVP--- 186
Query: 192 KKVCDTARDI------LASMKRD-WITTGRKPSGLCGAALYVSALT-----HGLKFSKSD 239
+++ + +R++ L + D WI TGRKP + AA Y++ + H LKFS
Sbjct: 187 EELAENSRELTKRAVALVELAADSWIVTGRKPIPIMMAATYLAWQSLKPNKHRLKFSLDK 246
Query: 240 IIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCK 275
+ +A+ K+L + +V+ + EVLCK
Sbjct: 247 FCQ--VAKVKKLKSAMT--------RVAEIKEVLCK 272
>gi|448730615|ref|ZP_21712921.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
gi|445793284|gb|EMA43867.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
Length = 283
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 66 SRERLMEKA-------FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
SR R+ KA F ++R+ AL G SD + A + A + +GR E
Sbjct: 91 SRSRIASKAERNKVYAFTEIRRQVCAL--GLSDSVRDRACVLFESAQDADLLRGRSLEGF 148
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y CR L + + EL A Y L + L + +DP+ +
Sbjct: 149 AAATIYAVCRTDGVSRTLAEIVTVAKASRDELTAAYDALNRDLGLPT-----GPIDPTEY 203
Query: 179 LHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA--LTHGL 233
L +F +L LP G V AR+++A + + +GR PSG+ A LY +A HGL
Sbjct: 204 LARFASQLGLPHG---VEARARELVAEGRDRGLVSGRNPSGVAAACLYTAATETGHGL 258
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+A + GR E V + LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQA--VRETASVIYRRALAEDLLPGRSIEGVATAALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ P L + ++ ++ EL Y + + L + ++ DP ++ +F
Sbjct: 189 SARQAGTPRSLDEIASVSRVDKMELTRTYRYVVRELKLE-----IQPADPEQYVPRFASD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G + + AR++L + K I +G+ P G
Sbjct: 244 L--GLSDEAERRARELLRTAKEAGIHSGKSPVG 274
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + EL Y + + L + ++ DP+ ++ +F
Sbjct: 191 AARQAGTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L +++ AR +L + K + I +G+ P G
Sbjct: 246 LEL--SEEAERRARQLLETAKDEGIISGKSPVG 276
>gi|448339456|ref|ZP_21528480.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445620008|gb|ELY73518.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 20/220 (9%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G + LSG R + + + + ER + ++R++ +
Sbjct: 79 DRGLSTEIGHGTDANGNT-LSGRKRRQVARMRREQTRGRFQSKAERNLAHGLGEVRRIVS 137
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + E+ I A + + A N GR E + + +Y ACR L D ++
Sbjct: 138 ALELSET--IRDQACQLFRSAQNENLLLGRSIEAMATASVYGACRCDGLSRTLDDVTDPA 195
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 202
+ + Y L L + K V PS F+ + L +P ++ AR +
Sbjct: 196 RVEQSRVTNAYKTLNTELGLP-----AKPVTPSAFVPRLASELDVP---DQIRQRARRLA 247
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ +TTG PSG A LY + G S+SD+ E
Sbjct: 248 EDSESTGVTTGVCPSGFAAACLYKAGCEQGQLLSQSDVAE 287
>gi|150399786|ref|YP_001323553.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399791|ref|YP_001323558.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399796|ref|YP_001323563.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399801|ref|YP_001323568.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150012489|gb|ABR54941.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012494|gb|ABR54946.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012499|gb|ABR54951.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012504|gb|ABR54956.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
Length = 339
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLAPTNPIDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ + + + G ++ A Y AV +N +GR E + A+ +Y AC
Sbjct: 122 ERNLSVALQELNNVSSKM--GLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAAC 179
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R+ P L + + +N ++G Y L + L + LK + ++ +F +L
Sbjct: 180 RKVGMPRTLDEVAKASELNKKKIGRAYRHLTKELNLN-----LKPTTATSYITQFCSKL- 233
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V + A +I+ IT+G+ P+G+
Sbjct: 234 -HLDKNVVNKAEEIVQQATERGITSGKGPTGV 264
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S R + AF ++ M + +N+ ++ IV A + + +GR + + A+CLY
Sbjct: 113 SSTNRTLINAFREIGAMADRINLPKT--IVDRAHTLFKQVNDQRTLRGRSNDAIAAACLY 170
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + +N E+G + + + L E+NV+ + F+ +F
Sbjct: 171 IACRQEGVPRTFKEICAVSRVNKREIGRCFKLILKAL----ETNVV-LITTGDFMSRFCS 225
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L LP KV A I + GR P + AA+Y+++ K S+ +I E
Sbjct: 226 NLSLP---PKVQRAATHIARKADELDLVAGRSPISVTAAAIYMASQASEEKRSQKEIGE 281
>gi|433590594|ref|YP_007280090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332002|ref|ZP_21521251.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384822|ref|ZP_21563557.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305374|gb|AGB31186.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445628140|gb|ELY81450.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445657826|gb|ELZ10650.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 319
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V + LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATASLYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + + E+G Y YIADE + L+ +P F+ +F L
Sbjct: 186 RKEDIPRSLEEVTAVSRVEQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G + V A +I+ + +G+ P+G
Sbjct: 240 DVGTD--VETKAVEIIDRTTEQGLHSGKSPTGF 270
>gi|126459199|ref|YP_001055477.1| transcription initiation factor IIB [Pyrobaculum calidifontis JCM
11548]
gi|126248920|gb|ABO08011.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
calidifontis JCM 11548]
Length = 331
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 15/175 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 134 VQTSY----ERNFIQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 187
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 188 AAAALYMACRMLKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 241
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
++ + ++L G + A DIL K+ IT G+ P+GL AA+Y+++L G
Sbjct: 242 YISRIAEQLKLSG--EAIKLAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMLG 294
>gi|161528849|ref|YP_001582675.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340150|gb|ABX13237.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 309
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + KAF + + L I E+ + A Y A+ +N +G + A +Y+ C
Sbjct: 112 ERNLVKAFSILDAYASNLGIPENAK--EHAAYIYRKALEKNLIRGSSIHTMVAGSVYVTC 169
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI---ADESNVLKQVDPSIFLHKFTD 184
+Q P D + NI+ L Y +L + L + E++ + QV S+ + + T
Sbjct: 170 KQLGIPRSADDTTRVSNISRRRLSKAYKRLVKNLDLKIDPSETDFVTQVANSLSVSEKTK 229
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
RL A I+ +K++ I G++P G+ AA+Y+SA+ +
Sbjct: 230 RL-----------AIKIINDVKKEKIHVGKRPLGITAAAVYLSAINY 265
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
L L +++ AR++L S +++ + +G+ P
Sbjct: 249 LDLSDETERM---ARELLESARQEGVHSGKSPV 278
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
L L +++ AR++L S +++ + +G+ P
Sbjct: 249 LDLSDETERM---ARELLESARQEGVHSGKSPV 278
>gi|399578576|ref|ZP_10772323.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399236462|gb|EJN57399.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 25/237 (10%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G++ LSG+ R + + + + ER + ++R++ +
Sbjct: 81 DRGLSTEIGRRTDAKGRT-LSGSKRRQLARLRREQTRGRFQSKAERNLAHGLGEVRRIAS 139
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L + S I A + + A + GR E V A+ +Y CR +P D +
Sbjct: 140 TLEL--SGSIRDQACQLFQSAQREDLLLGRSIEAVAAASVYGVCRCHGRPISRDDLVDVA 197
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
++ + Y L + L + + V P L K L G K+V A+ +
Sbjct: 198 RVDHSGVTNTYKTLNRELGLPTQP-----VAPQSLLPKLASEL--GVEKRVRRRAQRLAE 250
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHE 253
IT G +PSG+ A LY+++ +G +++ + E AR+ EL E
Sbjct: 251 RAHETSITNGYQPSGVAAACLYLASQENGESLTQTQVAEVAGTTPATLRARRAELIE 307
>gi|400595996|gb|EJP63780.1| transcription factor TFIIB [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 91/211 (43%), Gaps = 20/211 (9%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGE 89
+E +T F +S+ N +R + +++ + +A+ ++ + A+N+G+
Sbjct: 87 VEGQQLATSVAF-----SESRQHKNLLRVQNNTNQDKQQKGLMQAYKEIVSLCEAINMGQ 141
Query: 90 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 149
+ + + AK + + F KG+ E V A C+++ACRQ + P + N +++ E
Sbjct: 142 N--VSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVSKKE 199
Query: 150 LGAVYLQLCQVLYIADES---------NVLKQVDPSI----FLHKFTDRLLPGGNKKVCD 196
+G V+ QL L ++ V + S+ ++ +L +K+
Sbjct: 200 VGRVFKQLQNFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKSQQKISK 259
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVS 227
+RD+ GR P + A +Y++
Sbjct: 260 ISRDLAEQANDISALAGRSPLSVAAACIYMA 290
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + EL Y + + L + ++ DP+ ++ +F
Sbjct: 191 AARQAGTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L +++ AR +L + K + I +G+ P G
Sbjct: 246 LEL--SEEAERRARQLLETAKDEGIISGKSPVG 276
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V + LY
Sbjct: 153 SKERNLKQALGEIDRMASALGLPKN--VRETASVIYRRALNEDLLPGRSIEGVATASLYA 210
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P + + + I+ E Y + + L + +K DP +L +F
Sbjct: 211 AARQSGVPRTMDEVTTVSRIDGMEFKRTYRYIVRELGLG-----VKPADPEQYLSRFESE 265
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 220
L L K+ A D+L + K IT+G+ P GL
Sbjct: 266 LDLTHETKR---RAHDLLKTAKGTGITSGKSPVGLA 298
>gi|340344614|ref|ZP_08667746.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519755|gb|EGP93478.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 297
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 116/281 (41%), Gaps = 48/281 (17%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH---------NF---------STEATFV 42
M+ C C + H ++ C CG V+++ NF T+ +
Sbjct: 1 MLRCGRCGKESLIHDKILGEIFCKSCGFVIDEKINDLNHDSINFDDGKNNRRTGTKMSMS 60
Query: 43 KNAAGQSQLSGNFVRT-----IQSEYGAS--RERLMEK--------------AFDDMRQM 81
+ G S + G+ + I + A+ R R++++ AFD ++++
Sbjct: 61 VHDFGLSTMIGDINKDAKGNPISASTNATLKRIRILDQRSQLHKHIDINYRLAFDVLQRI 120
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
++ IG SD + +A Y AV + T+GR V A+ +Y ACR L D S
Sbjct: 121 QD--KIGVSDHVKELAAYIYRKAVEQKITQGRSINAVVAASMYAACRNTYTLRTLRDISE 178
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+I ++ Y + + L + + V+ QV L K ++ L G ++K A +I
Sbjct: 179 VTDIKPKKIAQSYRAIVKQLDL--KIPVVNQVSC---LSKISNNL--GVSEKTKYLAMEI 231
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L I GR P G+ A LY + L F+++ + E
Sbjct: 232 LKKAADLQILAGRDPVGISAAILYYACLIKKEPFTQTQVAE 272
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y
Sbjct: 128 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCVYA 185
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + S + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 186 AARMAGVPRSLDEISEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFGS 239
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L K+ AR +L + K + +G+ P G
Sbjct: 240 ELGLSDESKM--RARQLLKNAKEKGVHSGKSPVG 271
>gi|448732993|ref|ZP_21715239.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445803326|gb|EMA53623.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 351
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 19/223 (8%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
+ D STE + A + LS R +Q S+ ++ER + ++ +
Sbjct: 111 TMHDKGLSTEIDWRDQDARGNPLSTRQRRKMQRLRTWHSRSQTDGTQERNLRHGLGEIDR 170
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL + S I A Y + N GR E V A+ LY A RQ + L
Sbjct: 171 MASALGLPAS--IRETASVIYRRVIDENLLIGRSVESVSAAALYAATRQSTSARSLDGIV 228
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
++ +G Y YI+ E + ++ DP+ L + L + ++ +R
Sbjct: 229 TVARMDKQSIGRTYR------YISRELGLEIEPPDPTDHLPRLCSVL--DLSTEIEQQSR 280
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
++L +G+ P GL AA+Y +L K ++S I E
Sbjct: 281 ELLEIAIAAEAISGKNPVGLAAAAVYAGSLLCKEKVTQSSISE 323
>gi|345007074|ref|YP_004809926.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322700|gb|AEN07553.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 304
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + ++R++ +AL + E+ I A + + A + +GR E + A+ +Y AC
Sbjct: 122 ERNLAHGLGEVRRIVSALELSEA--IRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGAC 179
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRL 186
R LL + S + + Y L + L + E V PS+F+ + +D
Sbjct: 180 RCNGLSRLLDEVSEMARVEESRVANAYKTLNEELGLPAEP-----VSPSMFVPRLASDLE 234
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
P ++ AR + + +TTG P+G A LY + G ++SD+
Sbjct: 235 CPDETRQ---RARTLAEQAEERGVTTGVHPAGFAAACLYKAGQEQGKWVTQSDV 285
>gi|383625830|ref|ZP_09950236.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448701382|ref|ZP_21699683.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445778412|gb|EMA29359.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 308
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 25/243 (10%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H R YD + C +R G L D STE +A G ++LS
Sbjct: 54 HGPEWRAYDGEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NELSAKKRRRLARMRRE 111
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+S + + ER + ++R++ +AL + S + + A + A + +GR E
Sbjct: 112 QTRSRWRSKAERNLAHGLSEVRRLASALELSVS--VRNQACHLFRSAQNEDLLRGRSIEA 169
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ D S + + Y L + L + E + PS+
Sbjct: 170 IAAASVYGACRCNGLSRLVDDISEMARVAESRVTNAYKTLNEELGLPAEP-----ISPSM 224
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 225 FVPRLASDLECP---DEIRQRARTLAEQAEESGVTTGVHPAGFAAACLYKAGREEGRWLT 281
Query: 237 KSD 239
+S+
Sbjct: 282 QSE 284
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
L L +++ AR++L S +++ + +G+ P
Sbjct: 249 LDLSDETERM---ARELLESARQEGVHSGKSPV 278
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
L L +++ AR++L S +++ + +G+ P
Sbjct: 249 LDLSDETERM---ARELLDSARKEGVHSGKSPV 278
>gi|150401578|ref|YP_001325344.1| transcription initiation factor IIB [Methanococcus aeolicus
Nankai-3]
gi|189029853|sp|A6UW60.1|TF2B_META3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150014281|gb|ABR56732.1| Transcription factor TFIIB cyclin-related [Methanococcus aeolicus
Nankai-3]
Length = 334
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 173 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIGRTYRFISR 232
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 233 ELKIR-----LAPTSPIDYVPRFASELKLPG---EVESKAISILQKAGDKGLTSGRGPTG 284
Query: 219 LCGAALYVSALTHGLKFSKSDI 240
+ AA+Y++++ HG + ++ ++
Sbjct: 285 VAAAAIYIASVLHGTRKTQREV 306
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y
Sbjct: 159 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCVYA 216
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + S + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 217 AARMAGVPRSLDEISEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFGS 270
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G + + AR +L + K + +G+ P G
Sbjct: 271 EL--GLSDEAKMRARQLLKNAKEKGVHSGKSPVG 302
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 150 ERNLAFALSELDRMASALGLPRT--VRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAAC 207
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + ++ E+G Y + + L + L P ++ +F L
Sbjct: 208 RQCSVPRTLDEIGEVSRVSRIEIGRTYRFISRELSLK-----LMPTSPIDYVPRFCSGL- 261
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+V +IL IT+GR P+G+ AA+Y++++ G + ++ ++
Sbjct: 262 -KLKSEVQSKGVEILRQASEKEITSGRGPTGVAAAAIYIASMLCGERRTQREV 313
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
L L +++ AR++L S +++ + +G+ P
Sbjct: 249 LDLSDETERM---ARELLESARQEGVHSGKSPV 278
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ES + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPES--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ P L + S + E+ Y + + L + +K DP ++ +F
Sbjct: 191 SARQAGTPRSLDEISAVSRVEKDEVARTYRYVVRELGLE-----VKPADPEQYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L + + AR +L++ K I +G+ P GL AA+Y +AL K +++D+ E
Sbjct: 246 L--DLSDETERRARSLLSTAKEKGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSE 300
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
++ + +A+ ++ + A+N+G++ + + AK + + F KG+ E V A C+++AC
Sbjct: 119 QKGLMQAYKEIVSLCEAINMGQN--VSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIAC 176
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES---------NVLKQVDPSI- 177
RQ + P + N +++ E+G V+ QL + L ++ V + S+
Sbjct: 177 RQNNVPRTFREIFNLTSVSKKEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVG 236
Query: 178 ---FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
++ +L +K+ +RD+ GR P + A +Y++
Sbjct: 237 AEDLCSRYVSQLGFKSQQKISKISRDLAEKANDISALAGRSPLSVAAACIYMA 289
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 20/152 (13%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALVI-------------YRRALNEDLIRGRSIEGVSTAALYAAC 175
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 176 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 229
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V A +I+ + + +G+ P+G
Sbjct: 230 -DLSEEVQSKANEIIETTAEQGLLSGKSPTGF 260
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 134 SKERNLKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + EL Y + + L + ++ DP+ ++ +F
Sbjct: 192 AARQAGTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASD 246
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L +++ AR +L + K + I +G+ P G
Sbjct: 247 L--DLSEESERRARQLLETAKDEGIISGKSPVG 277
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 13/168 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +AF D+ + ++ ++ I +AK+ Y + +G+ + V A+C+++AC
Sbjct: 128 ERNLLQAFRDISNWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD-------ESNVLKQVDPSIFLH 180
RQ P + N +++ LG Y L Q + S P L
Sbjct: 186 RQAHVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPGASQDRHSSTPSGTTGPEDLLI 245
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
++ + L LP + +C D++ + I GR P + G A+Y +
Sbjct: 246 RYCNHLDLPPNVQPIC---ADVIKKARELGIADGRSPVSIAGGAIYFT 290
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++ + RER AF ++R++ +AL++ + I A + A + +GR E
Sbjct: 97 RARISSKRERNQVYAFTEIRRLTSALSL--PNHIREQACALFESAQNEDLLRGRSLEGFA 154
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR + + + E A Y L + L + + DP+ ++
Sbjct: 155 AACVYAACRVAGIARSVEEVCDVAKATEAEHHAAYRALNRDLGLP-----VAPTDPTEYI 209
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L ++ V AR+ +A D + G+ P G+ A LY +A G +++D
Sbjct: 210 PRFATKL--DLDRDVERRAREYVADAHEDGLVAGKNPCGVAAACLYTAARDVGADCTQAD 267
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y L +
Sbjct: 182 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLAR 241
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 242 ELGIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIAILQKAAEKGLTSGRGPTG 293
Query: 219 LCGAALYVSALTHGLKFSKSDIIE 242
+ AA+Y++++ G + ++ D+ E
Sbjct: 294 VAAAAIYIASVLLGNRRTQRDVAE 317
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSALYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVGKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASE 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L + + AR +L + K + + +G+ P GL AA+Y +AL K +++D+ E
Sbjct: 246 LEL--SDETERRARSLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSE 300
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
++ + +A+ ++ + A+N+G++ + + AK + + F KG+ E V A C+++AC
Sbjct: 119 QKGLMQAYKEIVSLCEAINMGQN--VSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIAC 176
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES---------NVLKQVDPSI- 177
RQ + P + N +++ E+G V+ QL + L ++ V + S+
Sbjct: 177 RQNNVPRTFREIFNLTSVSKKEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVG 236
Query: 178 ---FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
++ +L +K+ +RD+ GR P + A +Y++
Sbjct: 237 AEDLCSRYVSQLGFKNQQKISKISRDLAEKANDISALAGRSPLSVAAACIYMA 289
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
++ + +A+ ++ + A+N+G++ + + AK + + F KG+ E V A C+++AC
Sbjct: 120 QKGLMQAYKEIVSLCEAINMGQN--VSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIAC 177
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQL---CQVLYIAD-ESNVLKQV----DPSI-- 177
RQ + P + N +++ E+G V+ QL Q L D E+ L V + S+
Sbjct: 178 RQNNVPRTFREIFNLTSVSKKEVGRVFKQLQSFLQKLQGQDGEATGLNAVTNYENTSVGA 237
Query: 178 --FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
++ +L +K+ +RD+ GR P + A +Y++
Sbjct: 238 EDLCGRYVSQLGFKNQQKISKISRDLAEQANEISALAGRSPLSVAAACIYMA 289
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 17/222 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
+ D ST + A L+ + TI+ S+ S +R + +A ++ +
Sbjct: 69 TMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNR 128
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ L++ SD ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 129 LKDKLSL--SDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVG 186
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
N+ ++ Y L + L + + VDP L + R+ G +K A
Sbjct: 187 EAANLKKKDIARCYRLLHRELELK-----MPVVDPIQCLARIASRI--GITEKTKRYAAK 239
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+L + + G+ P GL AALY++ + +G ++ DI E
Sbjct: 240 VLKISQEHEESAGKDPMGLAAAALYLACVKNGEDITQRDIAE 281
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S +S ER + +A +++ ++ + LN+ + + A R Y AV + +GR E V
Sbjct: 109 RSRIQSSIERNLAQAMNELDRLSDQLNLPRN--VKEEAARIYRRAVEKGLVRGRSIESVI 166
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ +Y ACR+ P L + + + + ++ Y L + L I +++ DP F+
Sbjct: 167 AAAIYAACRELKIPRTLDEIAKHTKSSRKDIARCYRLLLKELDIKVQTS-----DPIDFI 221
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ L G+ V A +IL + +T G P+GL AA+Y++A G + ++ +
Sbjct: 222 PRIAHALNLSGS--VMKKAAEILHRARSLGVTAGNDPAGLAAAAVYIAAQLSGERRTQKE 279
Query: 240 I-----IEDFMARK--KELHEGVAANLPNN 262
I + + R KEL + + +LP
Sbjct: 280 IAHVAGVTEVTVRNRYKELAKELGIDLPTT 309
>gi|407465321|ref|YP_006776203.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048509|gb|AFS83261.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 309
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G SD +V A FY A+ RN +GR + + A+CLY +CR L + + I
Sbjct: 134 LGLSDTVVERASLFYRKAIERNLIRGRTVKSIAAACLYASCRDLEHHRTLTEIAIQFVIK 193
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+ Y L + L + VDP ++K ++ G ++KV A IL + +
Sbjct: 194 RKEIARAYRILFRELGFT-----VSVVDPIKSINKIASKI--GSSEKVIRKATQILTAAQ 246
Query: 207 RDWITTGRKP 216
I G+ P
Sbjct: 247 DAEIIAGKNP 256
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y
Sbjct: 173 SKERNLKQALGEVDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTSCVYA 230
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 231 AARMAGVPRSLDEIAEVSRVPKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 284
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G + + AR +L + K + +G+ P G
Sbjct: 285 EL--GLSDESTLRARQLLQNAKEKGVHSGKSPVG 316
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A++ + +GR E V LY AC
Sbjct: 146 ERNLQFALSETDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEAVATGALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ + E+G Y YIA E + ++ DP ++ +F L
Sbjct: 204 RKEGIPRSLEEVTHVARVEQKEIGRTY------RYIARELELGMRPTDPQKYVPRFCSAL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+++V A +++ + + + +G+ P+G
Sbjct: 258 --DLSEEVQSKANEVIEASVAEGLLSGKSPTG 287
>gi|429217323|ref|YP_007175313.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
gi|429133852|gb|AFZ70864.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
Length = 317
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 90 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 149
S+++ A + Y A + T+GR E V A+ LY ACR+ P + + + +L+I +
Sbjct: 143 SNKVREEASKMYRDATQKGLTRGRSIESVVAATLYAACRKLRIPCTIDEIAKHLSIKDND 202
Query: 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDW 209
+ + C L + D + ++P +F+++ L G V A IL +
Sbjct: 203 VKR-EIARCYRLLVRDLEVDIPVIEPELFVNRIVSAL--GLPDYVAVEAIKILREARGKG 259
Query: 210 ITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
T G+ PSGL AA+Y++AL HGL+ ++ ++
Sbjct: 260 TTAGKDPSGLAAAAVYLAALKHGLRRTQKEV 290
>gi|393215040|gb|EJD00532.1| hypothetical protein FOMMEDRAFT_34526, partial [Fomitiporia
mediterranea MF3/22]
Length = 87
Score = 52.0 bits (123), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 47 GQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
+++ G +V+ SE SRE+ ++ MR S+ I A R Y +A+
Sbjct: 1 AHTRMGGPYVKRNTSE---SREQTIDNGNTLMRL---------SEVIQTAAIRMYTLALE 48
Query: 107 RNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYL 143
T+GR+ V A CLY+ACRQK ++ ++LIDFS+ L
Sbjct: 49 HKVTEGRKNMNVFAVCLYIACRQKETRNYMLIDFSDLL 86
>gi|448569928|ref|ZP_21639011.1| Zinc finger TFIIB-type domain protein [Haloferax lucentense DSM
14919]
gi|445723732|gb|ELZ75369.1| Zinc finger TFIIB-type domain protein [Haloferax lucentense DSM
14919]
Length = 309
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 29/239 (12%)
Query: 32 DHNFSTEATFVKNAAG-------QSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNA 84
D+ S E + ++A G Q QL ++ YG+ ER + A ++ +M +A
Sbjct: 81 DYGVSAEIGYKRDANGNRVSSKKQWQLHRLRREHRRARYGSKAERNLAHALQEIARMSSA 140
Query: 85 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144
L++ S +V A + Y A R+ +GR E + A LY ACR + + +
Sbjct: 141 LDLPRS--VVEEASQVYRQAQHRDLIRGRSIEMMTAGSLYAACRCRGLQRRPGEIGSVAR 198
Query: 145 INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK-FTDRLLPGG--NKKVCDTARDI 201
+L Y L V +++P I + + RL +V A ++
Sbjct: 199 CTADQLRTGYRAL----------KVDMEIEPQIVTARTYVPRLASDCRVTSEVNARAYEL 248
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI-------IEDFMARKKELHE 253
R+ IT GR P+G+ A LY++ G ++++ + AR EL E
Sbjct: 249 ADLADRERITNGRNPAGVAAACLYLAGNERGSAKTQAEFAAAANVTVSTLRARYYELRE 307
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + D + A Y A++ N GR E V + LY
Sbjct: 162 SKERNLKQALGEIDRMASALGL--PDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 219
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ + EL Y + + L + ++ DP+ ++ +F R
Sbjct: 220 AARQVGNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSR 274
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L + + AR++LA IT+G+ P G
Sbjct: 275 LDL--SDETERRARELLADAASAGITSGKSPVG 305
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G + I A Y V N +GR E V + +Y ACR+ P L + + +
Sbjct: 206 LGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIATISGLP 265
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G Y + L + + DP ++ ++ + L G + + A ++L
Sbjct: 266 KKEIGRAYRAISHELGLK-----IPLTDPIAYVPRYVNALKLSGEAQ--EKAVELLNDAM 318
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +GR P+G+ AA+Y++ G + ++ ++
Sbjct: 319 AKGLVSGRSPTGVSAAAVYIAGALAGERRTQKEV 352
>gi|448624206|ref|ZP_21670279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445750173|gb|EMA01612.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 309
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 27/240 (11%)
Query: 32 DHNFSTEATFVKNAAGQS-------QLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNA 84
D S E + ++A G++ QL ++ + + ER + A ++ +M +A
Sbjct: 81 DRGVSAEIGYNRDANGRTVSSKKRRQLYRLRREHRRARFESKGERNLATALGEIIRMGSA 140
Query: 85 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144
L++ S ++ A + Y A + +GR E + A LY CR++ P + ++
Sbjct: 141 LDLSWS--LIEEASQLYRHAQDADLIRGRSVEMIAAGSLYATCRRRGLPRPRAEIASVAR 198
Query: 145 INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP--GGNKKVCDTARDIL 202
+ ++ Y L E + QV + + RL G + +V A ++
Sbjct: 199 CSCDQVQTGYRAL------NSELGIDAQV---VTARTYVTRLGSDSGLSTRVQSRAYELA 249
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI-------IEDFMARKKELHEGV 255
+ D IT GR P+G+ A LY++ H + +++++ + AR EL E V
Sbjct: 250 TTADEDGITNGRNPAGVAAACLYLAGTEHDVAPTQTELAALADVSVPTLRARYVELTELV 309
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 167 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 224
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 225 SARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 279
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
L L +++ AR++L S +++ + +G+ P
Sbjct: 280 LDLSDETERM---ARELLESARQEGVHSGKSPV 309
>gi|222476043|ref|YP_002564564.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|345007208|ref|YP_004810060.1| Cyclin domain-containing protein [halophilic archaeon DL31]
gi|354612343|ref|ZP_09030294.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
gi|222454414|gb|ACM58678.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|344322834|gb|AEN07687.1| Cyclin domain protein [halophilic archaeon DL31]
gi|353191188|gb|EHB56696.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
Length = 331
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + ++R++ + L + SD I A + + A + +GR E + + +Y AC
Sbjct: 139 ERNLAYGLGEVRRLASTLEL--SDSIRDQACQLFRSAQNEDLLRGRSIEAIATASVYGAC 196
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R +P +L + ++ + + + Y L L + P F+ +F L
Sbjct: 197 RCNDRPVILDEVADSARVELSRVRNAYKTLNTELGLPTPPR-----RPQSFIPRFASEL- 250
Query: 188 PGGNKKVCDTAR----DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
V DT R ++ + I+ G +P+G+ A LY +A G F+++D+ E
Sbjct: 251 -----DVADTVRQRAFELAKGAEATIISNGCQPTGVAAACLYKAAREQGQFFTQTDLAE 304
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E+NV + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCS 220
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NL--GLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITNMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E+NV + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCS 220
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NL--GLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + I+ + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITNMSDRINLPRN--IIDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E+NV + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCS 220
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NL--GLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>gi|433421465|ref|ZP_20405775.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432198878|gb|ELK55114.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 294
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 19/200 (9%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQS-----QLSGNFVRTIQSEYGA--SRERLMEKAFDDMR 79
K++ D ST + K+A G+S + +RT + S+ER +++A ++
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E V SC Y A R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEI 210
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 198
+ + E+ Y YIA E ++ +K DP ++ +F L K+ A
Sbjct: 211 AEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFASELGLSDESKM--RA 262
Query: 199 RDILASMKRDWITTGRKPSG 218
R +L + K + +G+ P G
Sbjct: 263 RQLLKNAKEKGVHSGKSPVG 282
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMAGTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASE 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G + + AR +L K I +G+ P G
Sbjct: 238 L--GLSDEAERQARQLLRDAKETGIHSGKSPVG 268
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G + A Y A+ N GR E V +C+Y
Sbjct: 126 SKERNLKQALGEIDRMASAL--GLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYA 183
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 184 AARMAGVPRSLDEITDVSRVDKSEVARTYRYVVRELKLE-----VRPADPESYVPRFASS 238
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G +++ AR +L + K + +G+ P G
Sbjct: 239 L--GLSEETERRARQLLKNAKEKGVHSGKSPVG 269
>gi|448335767|ref|ZP_21524902.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615977|gb|ELY69614.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 79 DRGLSTEIGRGTDAKG-NELSGQKRRRLARMRREQTRGRWRSKAERNLAHGLGEVRRLTS 137
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + SD + A + + A + +GR E + A+ +Y ACR L+ D S
Sbjct: 138 ALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVDDISEMA 195
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTARDIL 202
+ + Y L + L + E V PS+F+ + +D P ++ AR +
Sbjct: 196 RVAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQRARALA 247
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +TTG P+G A LY + G ++S+
Sbjct: 248 EQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSE 284
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 114/239 (47%), Gaps = 24/239 (10%)
Query: 15 RPYDSQLCCDRCGK------VLEDHNFSTEATFVKNAAG-----QSQLSGNFVRTIQSEY 63
R YDS+ R L D F+T +++ G ++++ +R QS+
Sbjct: 91 RSYDSERGMQRARAGPPVVLTLHDKGFTTTIGNDRDSHGNPLSPKTRIQFTRLRKWQSKI 150
Query: 64 --GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
+S ER + ++ ++ ++ ++L + +S I A Y V+ N T+GR + + A+
Sbjct: 151 RTNSSAERNLVRSLMELERITSSLGLPKS--ITERAALIYRRVVSNNLTRGRCIDSIVAA 208
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
+Y ACR+ P L + + + +++ +G Y L + L + + + ++ K
Sbjct: 209 AVYAACREAGLPRTLDEVAAHSSVDKRSVGRAYRFLARTLGLKP-----APITSTDYVPK 263
Query: 182 FTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G + +V + A +I+ ++ ++ R P+G+ AA+Y++++ G + ++ ++
Sbjct: 264 ICAAL--GVSGEVQERALEIVNEAEKSMVS--RSPAGVAAAAVYIASILLGERRTQREV 318
>gi|448726818|ref|ZP_21709208.1| transcription initiation factor TFB 7 [Halococcus morrhuae DSM
1307]
gi|445793379|gb|EMA43957.1| transcription initiation factor TFB 7 [Halococcus morrhuae DSM
1307]
Length = 202
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER F ++R+M AL G D I A + A + +GR E A+ +Y C
Sbjct: 19 ERNRVYGFTEVRRMVGAL--GLPDSIRDRACVLFESAQNEDLLRGRSLEGFAAAAVYAVC 76
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + L + EL A Y L + L + +DP +L +F ++L
Sbjct: 77 RTDALSRTLAEIGAVAKATRDELTAAYDALNRELGLPT-----GPIDPEEYLARFANQLE 131
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
LP G ++ AR ++ +T GR PSG+ A LY +A H
Sbjct: 132 LPNGIER---RARALVEKSHELGLTNGRNPSGVAAACLYTAATEH 173
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S ++ + A++++ M A+NI +V A + KG T+ + ++CLY
Sbjct: 112 SSSDQTLVSAYNEISNM--AVNINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLY 169
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ ELG Y + + L +V+ ++ S F+ +F
Sbjct: 170 IACRQEGVPRTFKEICALTKIDKKELGRCYKLIPKAL--ETSVDVIPRITTSDFIPRFCS 227
Query: 185 RLLPGGNKKV-CDTARDI-LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI-- 240
L K + + + I L +++ D + GR P + AA+Y+++L K +K I
Sbjct: 228 NLGMQLTKVIFLNVSLHIGLKAVELD-VVPGRSPLSVAAAAIYMASLASEKKLTKKAIGD 286
Query: 241 ---IEDFMARKKELHE 253
+ D R +LHE
Sbjct: 287 ITGVADVTIR--QLHE 300
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
+ER +++AF ++ +M +AL + +S + A Y A+ GR E V + +++A
Sbjct: 129 KERNLKQAFAEIERMASALGLPQS--VRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIA 186
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
RQ + P L + + + Y + + L I L DP +L +F L
Sbjct: 187 SRQANIPRSLDTLAEVSRVEKLSITRTYRYVTRELDIN-----LPPADPLEYLPRFVSDL 241
Query: 187 LPGGNKKVCDTARDILASMKRDWIT--TGRKPSGLCGAALYVSAL 229
+ +V +R++L ++ D + +G+ P GL AA+Y +L
Sbjct: 242 --DLSDEVEHRSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSL 284
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 40/248 (16%)
Query: 8 ARHVTGHRPYDSQLCCDRCGKVLEDH---------NFSTEATFVKNAAGQSQL------- 51
A V HR D L C CG V+ D +FS E K+ A S++
Sbjct: 21 AHLVEDHRAGD--LICPECGLVVGDRLVDVGTEWRSFSNE----KSGADPSRVGAPENPL 74
Query: 52 --SGNFVRTIQSEYGASRERLMEKAFDDM-RQMKNALN-IGESDEIVHVAK-------RF 100
S + +I +G S K ++M RQM L+ I E +H+ K +
Sbjct: 75 LGSADLSTSIAVGFGGSETNAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSIEDGAAKI 134
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
+ + +G+ E A+CLY+ACR++ P + ++ E+G C
Sbjct: 135 FKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICAASRVSKKEIGR-----CFK 189
Query: 161 LYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 220
L I L+Q+ + F+ +F L G + A I + GR P +
Sbjct: 190 LIIKSLETSLEQITSADFMSRFCGNL--GLPHSIQAAATRIAKKAVELDLVAGRSPISIA 247
Query: 221 GAALYVSA 228
AA+Y+++
Sbjct: 248 AAAIYMAS 255
>gi|118576996|ref|YP_876739.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195517|gb|ABK78435.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 304
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ KA + M + +G + V A Y AV T+GR + A+ LY ACR+
Sbjct: 120 LGKALIQLNAM--GIKLGVPEPAVEKAAYIYRKAVGEKLTRGRTVSSLIAASLYAACRES 177
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
P L D + N+ L + + L ++ L Q D S F+ K + L G
Sbjct: 178 GIPRTLDDMARVSNVERRILSRDLRTMLRKLGMS-----LTQYDTSSFITKIANNL--GL 230
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG-----LKFSKSDIIEDFM 245
+K A D+L + IT G+ P AALY++ + +G FS+ + D
Sbjct: 231 KEKTKRDAVDLLRRAEEIKITAGKNPVAQAAAALYIACMNNGEGISQKSFSREAGVSDVT 290
Query: 246 ARKK 249
R +
Sbjct: 291 VRNR 294
>gi|433593211|ref|YP_007282697.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308249|gb|AGB34059.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 96 DRGLSTEIGRGTDAKG-NELSGQKRRRLARMRREQTRGRWRSKAERNLAHGLGEVRRLTS 154
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + SD + A + + A + +GR E + A+ +Y ACR L+ D S
Sbjct: 155 ALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVDDISEMA 212
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTARDIL 202
+ + Y L + L + E V PS+F+ + +D P ++ AR +
Sbjct: 213 RVAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQRARALA 264
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +TTG P+G A LY + G ++S+
Sbjct: 265 EQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSE 301
>gi|448401815|ref|ZP_21571809.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445666063|gb|ELZ18733.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 297
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 17/205 (8%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGNFVRTI---QSEYGASR-----ERLMEKAFDDMRQMKN 83
D STE + +A S+L+G R I + E+ +R ER F ++R++
Sbjct: 67 DRGLSTEIGYGSHAGTSSRLTGRKRRQIARLRREHNRARISSKAERNQVYGFAEIRRLTA 126
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L++ ES + + + A + +GR E A+ +Y CR +S + + +
Sbjct: 127 LLSLPES--VREQSCALFESAQSEGLFQGRSLEGFAAAAIYATCRTRSIARTIDEITAVA 184
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ EL A Y + + L + +DP+ +L +F L G V AR+ +
Sbjct: 185 RADNAELSAAYDAMNRELGLR-----TGPIDPAQYLPRFASELELG--TAVERRAREHVE 237
Query: 204 SMKRDWITTGRKPSGLCGAALYVSA 228
++ + GR P G+ A LY +A
Sbjct: 238 ALLEAGLIGGRNPGGVAAACLYKAA 262
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + Y A+ + GR E V S LY
Sbjct: 152 SKERNLKQALGEIDRMASALGLPEN--VRETTSVIYRRALNDDLLPGRSIEGVATSSLYA 209
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 210 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 264
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++
Sbjct: 265 L--GISDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEV 317
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 30 LEDHNFSTEAT------FVKNAAGQSQLSGNFVRTIQSEYGASR--ERLMEKAFDDMRQM 81
L D STE + + ++ + ++Q +R Q AS+ ER M A +M+ +
Sbjct: 75 LPDKGLSTEISPTNRDYYGRSISNKNQSMLFRMRKWQRRARASKSAERNMAVAMREMQAV 134
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
A N+ I A Y A+ GR E V + LY ACRQ+ P L + S
Sbjct: 135 --ATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTLTEISR 192
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ + E+ Y QV+ A + + + + P +L + +L + KV ARD+
Sbjct: 193 HSRYSRKEISRTY----QVMVKALKMHSMPPL-PEDYLPRICSKL--ELSPKVEGAARDL 245
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L + + D T P L AA+Y++++ + + + D+
Sbjct: 246 LRAAQ-DVPLTNSVPISLAAAAVYIASIVNNERRKQKDV 283
>gi|448340472|ref|ZP_21529444.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
gi|445630206|gb|ELY83473.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
Length = 312
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 25/243 (10%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H R YD + C +R G L D STE +A G +++SG
Sbjct: 58 HGPEWRAYDDEEC-ERTGAPLTATRHDRGLSTEIGRGTDAKG-NEISGQKRRRLTRMRRE 115
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + ER + ++R++ +AL + SD + A + + A + +GR E
Sbjct: 116 QTRGRWRLKAERNLAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEA 173
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ + S + + Y L + L + E V PS+
Sbjct: 174 IAAASVYGACRCNGLSRLVGEVSEMARVAEPRVTNAYKTLNEELGLPAEP-----VSPSM 228
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 229 FVPRLASDLECP---DEIRQRARTLAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLT 285
Query: 237 KSD 239
+S+
Sbjct: 286 QSE 288
>gi|291333561|gb|ADD93256.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C82]
Length = 242
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 17/222 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQ---SQLSGNFVRT----IQSEYGASRERLMEKAFDDMRQ 80
+L D ST+ + K+ +G+ S+ F R +S + ER + A ++ +
Sbjct: 4 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 63
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + L + +S + A Y AV + +GR E V A+ LY ACRQ P L +
Sbjct: 64 MASRLELPKS--VREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIG 121
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
E+G Y + + L + + P ++ +F L G + V A +
Sbjct: 122 QASRTGRKEIGRTYRFMVRELKMK-----IMPTGPEDYISRFCSGL--GLDADVEAKAYE 174
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
++ + + +T+GR P+G+ + +Y++++ G + ++ ++ E
Sbjct: 175 LIKAAQEKELTSGRGPTGIAASIIYIASVLCGKRRTQREVAE 216
>gi|354612563|ref|ZP_09030512.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
gi|353189056|gb|EHB54569.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
Length = 201
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 11/173 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + ++R++ +AL + SD + A + + A + +GR E + A+ +Y AC
Sbjct: 15 ERNLAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQTEDLLRGRSIEAIAAASVYGAC 72
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRL 186
R LL + S + + Y L + L + ES V PS+F+ + +D
Sbjct: 73 RCNRLSRLLDEVSEMARVEESRVANAYKTLNEELGLPAES-----VSPSMFVPRLASDLE 127
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
P ++ AR + + +TTG P+G A LY +A G ++++
Sbjct: 128 CPDAIRQ---RARTLAEQAEELGVTTGVHPAGFAAACLYKAAREEGRWLTQTE 177
>gi|156372338|ref|XP_001628995.1| predicted protein [Nematostella vectensis]
gi|156215985|gb|EDO36932.1| predicted protein [Nematostella vectensis]
Length = 310
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 15/201 (7%)
Query: 43 KNAAGQSQLSGNFVRTIQSEYGAS-RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFY 101
K + G + + G F RT S G S +R + AF ++ M + +N+ +IV A + +
Sbjct: 80 KPSGGNADIEG-FARTHNSRSGMSGADRSLMNAFREISIMADRINLPR--KIVDRANQLF 136
Query: 102 GIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161
+ KGR + + ++CLY+ACRQ+ P L + I+ E+G C L
Sbjct: 137 KQVHEQKSLKGRSNDTIASACLYIACRQEGVPRTLKEICAIGKISKKEIGR-----CFKL 191
Query: 162 YIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD-TARDILASMKRDWITTGRKPSGL 219
+ + + F+ +F L LP +K AR +++ D + GR P +
Sbjct: 192 ILKHLETSVDLITSGDFMSRFCSNLTLPLSVQKAATYIARR---AVELDLV-AGRSPISI 247
Query: 220 CGAALYVSALTHGLKFSKSDI 240
AA+Y+++ K S+ +I
Sbjct: 248 AAAAIYMASQASEEKRSQKEI 268
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M ++L I S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSEIDRMASSLGIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + ++ VDP + +F L
Sbjct: 190 RMEGIPRSLEEVAAVSRVERKEIGRTYRYVAQELSLE-----MEPVDPKQYTPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ +I E
Sbjct: 244 -DLSEEVQAKATEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREIAE 297
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 18/202 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQN--VRETASVIYRRALGDDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + + EL Y + + L + ++ DP +L +F
Sbjct: 189 AARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS------D 239
L +++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S D
Sbjct: 244 L--ELSEETQRQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVAD 301
Query: 240 IIE-DFMARKKELHEGVAANLP 260
I E R KEL E A +LP
Sbjct: 302 ISEVTIRNRYKELLE--AEDLP 321
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 142 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 199
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 200 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 253
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L K+ AR +L + K + +G+ P G
Sbjct: 254 ELGLSDESKM--RARKLLKNAKEKGVHSGKSPVG 285
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 142 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 199
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 200 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 253
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L K+ AR +L + K + +G+ P G
Sbjct: 254 ELGLSDESKM--RARQLLKNAKEKGVHSGKSPVG 285
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 142 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 199
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 200 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 253
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L K+ AR +L + K + +G+ P G
Sbjct: 254 ELGLSDESKM--RARQLLKNAKEKGVHSGKSPVG 285
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ + + + G ++ A Y AV +N +GR E + A+ +Y AC
Sbjct: 122 ERNLSVALQELNNVSSKM--GLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAAC 179
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R+ P L + + +N ++G Y L + L + LK + ++ +F +L
Sbjct: 180 RKVGMPRTLDEVAKASELNKKKIGRAYRHLTKELNLN-----LKPTTANSYITQFCSKLR 234
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V + A +I+ IT+G+ P+G+
Sbjct: 235 L--DKNVVNKAEEIVQKATDVGITSGKGPTGV 264
>gi|448312251|ref|ZP_21501998.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445601851|gb|ELY55832.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 265
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 19/207 (9%)
Query: 32 DHNFSTEATFVK--NAAGQSQLSGNFVRTI---QSEYGASR-----ERLMEKAFDDMRQM 81
D STE F N +++LSG R I + E+ SR ER F ++R++
Sbjct: 33 DRGLSTEIGFGSGSNDDYRARLSGRKRRQIARLRREHNRSRISSKVERNQVYGFAEIRRV 92
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
L++ D I + + A + +GR E A+ LY CR +S P + + +
Sbjct: 93 NALLSL--PDCIREQSCSLFESAQSEGLLQGRSLEGFAAASLYATCRARSLPRTVEEITA 150
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ EL A Y L + L + +DP+ +L ++ +L G + AR
Sbjct: 151 VARADEGELTAAYDALNRELGLPT-----GPIDPTQYLPRYASKL--GLETPIEKRARAH 203
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSA 228
++ + + + GR PSG+ A LY +A
Sbjct: 204 VSELLQAGLVVGRNPSGIAAACLYKAA 230
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 142 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 199
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 200 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 253
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L K+ AR +L + K + +G+ P G
Sbjct: 254 ELGLSDESKM--RARKLLKNAKEKGVHSGKSPVG 285
>gi|385301292|gb|EIF45494.1| transcription initiation factor iib [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/258 (19%), Positives = 93/258 (36%), Gaps = 47/258 (18%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEA---TF-------------------------VKNAA 46
R D + C CG VL DH + + TF +
Sbjct: 43 RHSDGDIVCALCGLVLSDHLIDSRSEWRTFNNDDQNGDDPSRVGEASASVLDSDQLSTVI 102
Query: 47 GQSQLSGNFVRTIQSEYGAS----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYG 102
SQ G R + G S ++ ++ A+ + QM + + + + AK Y
Sbjct: 103 SNSQEGGRVARELNRTQGKSVADKKDHALQTAYAKISQMCDGYQLPKV--VQDGAKEVYK 160
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV-- 160
+ +G+ E + A+ ++L CR+ S P + N+ E+G + + Q+
Sbjct: 161 LVYDDKMLRGKSQESIMAAAIFLGCRKASVPRSFKEIWALTNVPRKEIGKTFKVINQIIR 220
Query: 161 --------LYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWIT 211
L N+ Q +P + +F L G ++ +AR I ++ +
Sbjct: 221 KKNAEHGGLITYQNDNIATTQTNPEDLVGRFCSHL--GLTPQITSSARHIARKLREVGVL 278
Query: 212 TGRKPSGLCGAALYVSAL 229
GR P+ + +Y + L
Sbjct: 279 EGRSPTTIAATVIYFATL 296
>gi|359417944|ref|ZP_09209980.1| transcription initiation factor IIB, partial [Candidatus
Haloredivivus sp. G17]
gi|358031705|gb|EHK00573.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 201
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLY 124
S++R + A ++ M + LN+ ES VH R Y AV + +GR E + ++ +Y
Sbjct: 3 SKDRNLGFALSELNSMISNLNLPES---VHEETARLYEKAVDQGLVRGRSMESIISALIY 59
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFT 183
+ R++ P L + S+ I E+G Y Y+A E + + P ++ +F
Sbjct: 60 IVARKQGTPRTLDEISDASGIEKREIGRAY------RYVARELGLRILPAKPQDYVPRFA 113
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+L G +V AR+IL + + +G+ P+G
Sbjct: 114 GKLQLSG--EVQARARNILKEARERDLLSGKGPTG 146
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + +S V Y A+ + +GR E V + LY C
Sbjct: 130 ERNLQFALSEIDRMASALGVPQSTR--EVTSVLYRRALEEDLIRGRSIEGVATAALYAGC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + + I E+ Y YI+ E + ++ +DP ++ +F L
Sbjct: 188 RQEGLPRSLEEVTEVSRIERIEVSRTY------RYISSELGLEIRPIDPKQYVPRFCSAL 241
Query: 187 -LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
LP ++V A++I+ D + +GR PSG
Sbjct: 242 DLP---QEVEAKAKEIIDETA-DPLLSGRGPSGF 271
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 141 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 198
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 199 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 252
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L K+ AR +L + K + +G+ P G
Sbjct: 253 ELGLSDESKM--RARKLLKNAKEKGVHSGKSPVG 284
>gi|134046665|ref|YP_001098150.1| transcription initiation factor IIB [Methanococcus maripaludis C5]
gi|189029855|sp|A4G0F2.1|TF2B_METM5 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|132664290|gb|ABO35936.1| Transcription initiation factor IIB (TFIIB) [Methanococcus
maripaludis C5]
Length = 339
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+ R P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSSRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>gi|448305351|ref|ZP_21495283.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589198|gb|ELY43434.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 334
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I D + A Y A+ N GR E + + L A
Sbjct: 139 ERNLKHALGEIDRMGSALGI--PDATLETASVIYRRALEENLLPGRSIEGMATAALNAAV 196
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P + + + I+ E Y L + L + + DP +L ++ L
Sbjct: 197 RQTGVPRSIDELATVSRIDYLEAARAYRYLVRELELP-----MAPPDPLEYLPRYASAL- 250
Query: 188 PGGNKKVCDTAR---DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T R D+L + +G+ P GL AA+Y + G +++D+
Sbjct: 251 ----EITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGEALTQADV 302
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S +R + AF ++ QM + LN+ I A + KGR + + ++C+Y+
Sbjct: 112 SSDRALINAFREIGQMGDRLNLPRM--IADRANTLFKQVHEGKALKGRSNDAIASACMYI 169
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACRQ+ P + I+ E+G V+ + + L E+NV + + F+ +F
Sbjct: 170 ACRQEGVPRTFKEICAVSKISKKEIGRVFKLILKNL----ETNV-ELITTGDFMSRFCSN 224
Query: 186 L-LPGGNKKVCDTARDILASMKRDW-ITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP +K A +A D +T GR P + AA+Y+++ K S+ +I
Sbjct: 225 LSLPNSVQK----AATHIARKAVDLDLTPGRSPISVAAAAIYMASQASADKKSQKEI 277
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++ + RER AF ++R++ AL G + I A + A + +GR E
Sbjct: 98 RARISSKRERNQVYAFTEIRRVTGAL--GLPNHIRDQACSLFESAQNEDLLRGRSLEGFA 155
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR + + + E A Y L + L + + DP+ +L
Sbjct: 156 AACVYAACRVAGISRSVEEVCDVSKSTESEHQAAYRALNRDLGLP-----VAPADPTEYL 210
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L ++ AR+ +A + D + G+ P G+ A LY +A G ++SD
Sbjct: 211 PRFATKL--DLDRDTERRAREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSD 268
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,184,580,020
Number of Sequences: 23463169
Number of extensions: 332800412
Number of successful extensions: 1473464
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 2721
Number of HSP's that attempted gapping in prelim test: 1433159
Number of HSP's gapped (non-prelim): 29889
length of query: 540
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 392
effective length of database: 8,886,646,355
effective search space: 3483565371160
effective search space used: 3483565371160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)