BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009187
(540 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6R0|TF3B_SCHPO Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=brf1 PE=1 SV=2
Length = 492
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 137/523 (26%), Positives = 240/523 (45%), Gaps = 82/523 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY---GASRERLME 72
C +CG V+E +E TF + + G + + G+ V RT Y G+ R +
Sbjct: 22 CTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQTHARTFGGPYRNQGSVESRELT 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
A R A+ + ++ + A R++ +A+ NF KGRR++ V ASCLY+ CR
Sbjct: 82 IANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKT 141
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
+LIDFS+ L INV++LG+ +L+LC+VL L +DPS+++ +F L G
Sbjct: 142 SHMLIDFSDILQINVFKLGSTFLKLCRVLRPN-----LPLLDPSLYISRFASLLEFGPET 196
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKEL 251
+V + A ++A M RDW+ GR+P+G+CGA L ++A + F +S + + ++
Sbjct: 197 HRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAARMNN--FRRSVREVVHVVKVADI 254
Query: 252 HEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAF 311
+ K D K G +F I LEG +DPP+F
Sbjct: 255 --------------------TIQKRLDEFKLTESGDL--SIADFRNI--WLEGQSDPPSF 290
Query: 312 QVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQSPE-PESIGV 355
++ + A N +E SP +S+ KV+S E P +
Sbjct: 291 TKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQETPVHLKA 350
Query: 356 PKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKII 415
+ + + +GD + + + S+ D+DD E++ L +++E K +
Sbjct: 351 DEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQV 410
Query: 416 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 475
W E+N++YL E+ AK L+ ++L + + +++++
Sbjct: 411 WMELNKDYLAEEEAK--------------------NLKLQEDL----KKGIVRQPRKRRR 446
Query: 476 KRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 518
R ++ + G A TA E+ + M+ ++ S KINY+ L+ LFD+
Sbjct: 447 YRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489
>sp|P29056|TF3B_YEAST Transcription factor IIIB 70 kDa subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BRF1 PE=1
SV=1
Length = 596
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++I+
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIV 245
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 437
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 438 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 492
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 493 ATRRMLTKKRLSSKINYDVLEKLF 516
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1
PE=1 SV=1
Length = 676
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 156/315 (49%), Gaps = 51/315 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARK 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 198 EKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFRRTV 246
Query: 249 KELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 306
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 247 KEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LEEEC 289
Query: 307 DPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 290 DPPSYTAGQRKLRMK 304
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 31/157 (19%)
Query: 363 TASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEE 418
TA++ G D + +P D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 416 TAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMR 475
Query: 419 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 478
N EYL EQ KEA A K EL KE + K++
Sbjct: 476 ENAEYLREQKEKEARIAKEK------------------ELGIY---------KEHKPKKS 508
Query: 479 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 515
+ + A TA EA +ML +K++SSKINY VL L
Sbjct: 509 CKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>sp|P46070|TF3B_KLULA Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2
Length = 556
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 133/234 (56%), Gaps = 17/234 (7%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------TIQSEYG----ASRE 68
++L C CG V E+++ +E TF + + G + + G FV T S G SRE
Sbjct: 29 NELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQAHPTFMSHSGQNALMSRE 88
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ A ++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR
Sbjct: 89 TTLNNARRKLKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACR 146
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
++ +LIDFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L
Sbjct: 147 KERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLEL 202
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDII 241
G K KV A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+I+
Sbjct: 203 GDKKIKVIRDAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIV 256
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 382 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 441
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 442 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 501
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 502 RLSSKINYDVLEKLF 516
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1
PE=1 SV=1
Length = 677
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 57/318 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFM 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H DF
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH-----------DFR 243
Query: 246 ARKKELHEGVAANLPNNGPKV--SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLE 303
KE+ V KV S + + L + +DT P + + +EFM I LE
Sbjct: 244 RTVKEVISVV---------KVCESTLRKRLTEFEDT--PTS----QLTIDEFMKID--LE 286
Query: 304 GGADPPAFQVAERERMVK 321
DPP++ +R+ +K
Sbjct: 287 EECDPPSYTAGQRKLRMK 304
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 379 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 438
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 439 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 498
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 499 TKKRLSSKINYDVLEKL 515
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>sp|P43072|TF3B_CANAL Transcription factor IIIB 70 kDa subunit OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=TDS4 PE=3 SV=1
Length = 553
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 132/255 (51%), Gaps = 28/255 (10%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 10 CKTC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 64
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + ++++ AL I D I A ++ +A+
Sbjct: 65 GADQARATFAGGRQNAMESREQTLSNGKRKIKRIAAALKI--PDYIAEAAGEWFRLALTL 122
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 123 NFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 180
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 181 --LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLL 238
Query: 227 SALTHGLKFSKSDII 241
+A + + S ++I+
Sbjct: 239 AARMNNFRRSHAEIV 253
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 30/137 (21%)
Query: 390 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 449
N D D+ ++ L EEE K+ IW +N +YL EQ K
Sbjct: 431 NSDDDDEIVLESKL-TEEEVAIKERIWTGLNHDYLVEQEKKRLK---------------- 473
Query: 450 EGLQAAQELAAAAAAAVAKSRKEKQQKR-AAEAKN---------SGPAQTALEATRRMLT 499
Q A EL + + + +R+++ + AE + G ++A ++ + ++
Sbjct: 474 ---QEADELTGNTSKSSSGNRRKRNKSSLPAELRKELGDIDLDEDGTPRSAADSAKMYIS 530
Query: 500 KKRLSSKINYDVLEKLF 516
K +S KINYD L+ L
Sbjct: 531 KTSVSKKINYDSLKGLL 547
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 131/302 (43%), Gaps = 55/302 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 185 EIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAAN 258
R +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 237 YRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIK 296
Query: 259 LP 260
+P
Sbjct: 297 VP 298
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D STE ++ +G + +R QS S ER + A ++ ++ L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILD 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 235 EAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 294
Query: 257 ANLP 260
+P
Sbjct: 295 IKVP 298
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D STE ++ +G + +R QS S ER + A ++ ++ L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILD 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 235 EAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 294
Query: 257 ANLP 260
+P
Sbjct: 295 IKVP 298
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 55/302 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 185 EIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVAAN 258
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIK 296
Query: 259 LP 260
+P
Sbjct: 297 VP 298
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 22/244 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L+
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLS 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHEGVA 256
+ +T+G+ P+GL AALY+++L G K ++ ++ E R KEL E +
Sbjct: 235 EAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKELVEKLN 294
Query: 257 ANLP 260
+P
Sbjct: 295 LKVP 298
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G E+ A Y A++ + GR E V + LY
Sbjct: 134 SKERNLKQALGEIERMASAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ S P + + +N I+ E Y + + L + + DP+ ++ +F
Sbjct: 192 SARQLSTPRSIDEVANVSRIDEMEFKRTYRYIVRELSLE-----VAPADPAQYVPRFASD 246
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
L LP +V +R+++++ + D +T+G+ P GL AA+Y S+L K ++S++ E
Sbjct: 247 LDLP---DEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSE 301
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY AC
Sbjct: 135 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAAC 192
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P L + + Y ++ E+G Y + + L + L P+ ++ +F L
Sbjct: 193 RQAGVPRTLDEIATYSRVDRKEIGRTYRFITRELGLK-----LMPTSPADYIPRFCAAL- 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G + +V A +I+ + +T+GR P+G+ AALYV+++ G + ++ ++ E
Sbjct: 247 -GLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAE 300
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + +V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIIE-------DFMARKKELHEGVAANLPNN 262
+I + R KEL + + ++P
Sbjct: 279 EIAQVAGVTEVTVRNRYKELTQELKISIPTQ 309
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIIE-------DFMARKKELHEGVAANLPNN 262
+I + R KEL + + ++P
Sbjct: 279 EIAQVAGVTEVTVRNRYKELTQELKISIPTQ 309
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 22/202 (10%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M + L+I D++ A Y AV +N +GR E V A LY AC
Sbjct: 121 ERNLSQALQELERMASNLSI--PDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTD 184
R + P L + ++ + E+G Y + + L + N++ PS ++ +F
Sbjct: 179 RITNVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCS 230
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-- 242
+L + + + A +IL S + +T+G+ P+G+ AA+Y+++L G + ++ + E
Sbjct: 231 KLKLSMDTR--NKALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVA 288
Query: 243 -----DFMARKKELHEGVAANL 259
R KEL E + N+
Sbjct: 289 GVTEVTIRNRYKELTEKLQLNV 310
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATACLYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + I+ E+G Y + Q L + ++ DP +L +F L
Sbjct: 186 RQEGIPRTLEEVTEVARIDQKEIGRTYRYVAQELSLE-----IQPTDPKEYLPRFASDL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+++V AR+I+ + + +G+ PSG
Sbjct: 240 -ELSEEVIAKAREIIDTSAEQGLLSGKSPSGF 270
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 12/204 (5%)
Query: 42 VKNAAGQSQLSGNFVRTIQS--EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
++++ G+ +RT + + SRER +AF ++ + + L + ES + +A
Sbjct: 87 LRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPES--VRELAAS 144
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQLC 158
Y A +GR E V + ++ AC++ P + + L + + E+ Y L
Sbjct: 145 IYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEILRAYRVLQ 204
Query: 159 QVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+ L + K +PS L +F +L G ++ V A++I+ K IT G+ P+G
Sbjct: 205 RRLNLKQ-----KPTEPSDHLPRFASKL--GVSENVQAKAQEIIEKAKEKGITVGKGPAG 257
Query: 219 LCGAALYVSALTHGLKFSKSDIIE 242
+ AALY++++ G + ++ +I E
Sbjct: 258 VAAAALYIASILEGERRTQKEIAE 281
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 22/202 (10%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M A N+ +++ A Y AV +N +GR E V A LY AC
Sbjct: 121 ERNLSQALQELERM--AFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTD 184
R + P L + ++ + E+G Y + + L + N++ PS ++ +F
Sbjct: 179 RITNVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCS 230
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-- 242
+L + + + A +IL + +T+G+ P+G+ AA+Y+++L G + ++ + E
Sbjct: 231 KLKLSMDTR--NKALEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVA 288
Query: 243 -----DFMARKKELHEGVAANL 259
R KEL E + N+
Sbjct: 289 GVTEVTIRNRYKELTEKLKLNV 310
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTE 116
+Q+ Y ER + +A ++ ++ + L + +S DE + V Y + KGR E
Sbjct: 139 VQTSY----ERNLVQATHELNRIAHQLGVPKSCMDEALAV----YKQVLKSGLVKGRSVE 190
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
+ A+CL++ACR + P L + S Y E+ + + + L I L DP
Sbjct: 191 AIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIARELRIR-----LPLSDPR 245
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
++ K ++L LPG + A +L K +T G+ P+GL AA+Y+++L G
Sbjct: 246 QYVPKIVEQLKLPGD---IAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIASLLKGEVR 302
Query: 236 SKSDI 240
++ +I
Sbjct: 303 TQKEI 307
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
L DH ST A +LS + +Q + +R + A +++ +M
Sbjct: 70 LHDHGLSTVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRM 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
N LN+ +I A Y AV + +GR E V A+ +Y ACR +P L + +
Sbjct: 130 ANLLNL--PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAK 187
Query: 142 YLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
L +N E+ Y + + L IAD + + ++ ++ L G+ + +
Sbjct: 188 KLEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLR---------GD--IIEY 236
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
A I+ +K IT G+ P+G+ A +Y++ + G + ++ +I
Sbjct: 237 AMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEI 279
>sp|Q8ZWS3|TF2B_PYRAE Transcription initiation factor IIB OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=tfb PE=3 SV=1
Length = 333
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++A+ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSAMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPIL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>sp|B1YCX0|TF2B_PYRNV Transcription initiation factor IIB OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=tfb PE=3 SV=1
Length = 333
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP++
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPTL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>sp|Q9Y942|TF2B_AERPE Transcription initiation factor IIB OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=tfb PE=3 SV=2
Length = 322
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
A +G + +V A + Y A+ + T+GR E + A+ LY A R P L D +
Sbjct: 131 ASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAM 190
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
NV + L + D + + P F++ L G + V A I+
Sbjct: 191 KGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYTIISAL--GLPEHVAIEAIKIID 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
++ +T G+ P GL GAA+Y++AL HG++ ++ +I
Sbjct: 249 LSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEI 285
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
+ + +T+GR P+G+ AALY++++ G ++ D+ E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAE 284
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 134 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 192 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELE 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSG 218
++V A +I+ + + + +G+ P+G
Sbjct: 247 L--TEEVQSKANEIIETTAEEGLLSGKSPTG 275
>sp|A4WMA6|TF2B_PYRAR Transcription initiation factor IIB OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=tfb PE=3 SV=1
Length = 333
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMRMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V A DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>sp|A1RV37|TF2B_PYRIL Transcription initiation factor IIB OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=tfb PE=3 SV=1
Length = 333
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ G V A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA +IL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIEILQKAKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQ 301
Query: 238 SD 239
D
Sbjct: 302 KD 303
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ P L + ++
Sbjct: 132 RDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIAD 191
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L+I L P ++ +F L G V A +I
Sbjct: 192 VSRVSKKEVGRTYRFLTRELHIR-----LPPTSPIDYVPRFASELNLSG--VVQSKAIEI 244
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ + +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 283
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y L + L I L P ++ +F L G + + A +I
Sbjct: 191 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEAQSRAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +T+GR P+G+ AALY++++ G + ++ D+
Sbjct: 244 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 282
>sp|Q58192|TF2B_METJA Transcription initiation factor IIB OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=tfb PE=3 SV=1
Length = 673
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 512 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTY----- 566
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 567 -RFLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 622
Query: 218 GLCGAALYVSALTHGLKFSKSDIIE 242
G+ AA+Y++++ G + ++ ++ E
Sbjct: 623 GVAAAAIYIASVLLGCRRTQREVAE 647
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 143 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 200
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 201 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 254
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 255 TLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 308
>sp|Q9P9I7|TF2B_METTL Transcription initiation factor IIB OS=Methanococcus
thermolithotrophicus GN=tfb PE=3 SV=1
Length = 339
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLTPTNPIDYVPRFASELKLPG---EVESKAISILQKANEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ HG + ++ ++
Sbjct: 289 GVAAAAIYIASVLHGTRRTQREV 311
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 143 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 200
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 201 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLT 255
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 256 LKG--EVQSRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 308
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 146 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 204 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE 242
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ E
Sbjct: 258 NLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAE 311
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 24/247 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSG---NFVRTIQSEYGASR-----ERLMEKAFDDMRQ 80
++ D ST+ + +Q++G N +R ++ R ER + A ++ +
Sbjct: 68 MIHDKGLSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDR 127
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M L + + VA Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 128 MAAQLRL--PRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 185
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ ++ E+G Y + + L + L+ P ++ +F D L G + + A++
Sbjct: 186 SVSKVSKKEIGRSYRFMARGLGLN-----LRPTSPIEYVDRFGDAL--GVSARTKKRAKE 238
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIE-------DFMARKKELHE 253
IL + IT+G+ P+GL AALY++AL G K ++ ++ E R KEL E
Sbjct: 239 ILNEAIKRGITSGKGPTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKELVE 298
Query: 254 GVAANLP 260
+ N+P
Sbjct: 299 KLGINVP 305
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++ER +++A ++ +M +AL G D + A Y A+ + GR E V SC+Y
Sbjct: 127 AKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYA 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ + E+ Y + + L + + DP ++ +F
Sbjct: 185 AARQAGVPRSLDEIADVSRVEKAEIARTYRYVVRELGLE-----VAPADPESYVPRFASD 239
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G + + AR++L + K + +G+ P G
Sbjct: 240 L--GLSDEASHRARELLKTAKDKGVHSGKSPVG 270
>sp|A9A8Q0|TF2B_METM6 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=tfb PE=3 SV=1
Length = 339
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>sp|A6VI28|TF2B_METM7 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=tfb PE=3 SV=1
Length = 339
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>sp|Q6M176|TF2B_METMP Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain S2 / LL) GN=tfb PE=3 SV=1
Length = 339
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>sp|Q9HHH8|TF2B5_HALSA Transcription initiation factor IIB 5 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbE PE=3
SV=1
Length = 307
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+ + +++ER + ++R++ +AL G +D + A + + A KGR E +
Sbjct: 113 RGRWRSTKERNLGHGLTEIRRIASAL--GLADSVRDQACQLFRTAQNERLLKGRSIEAMA 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ ++ ACR + +L+ D + + + Y L + L + P + L
Sbjct: 171 AASVFGACRCNGESWLIDDVAPMAQVGQNRVENAYTVLNEELGLPT---------PPVSL 221
Query: 180 HKFTDRLLP--GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+F RL G V A +++ ITTG PSG A LY++A H ++
Sbjct: 222 DQFVPRLASDLGCTDVVRRRAEELVVQAVDAGITTGVHPSGFAAACLYMAACVHDAPLTQ 281
>sp|A6UW60|TF2B_META3 Transcription initiation factor IIB OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=tfb PE=3 SV=1
Length = 334
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 173 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIGRTYRFISR 232
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 233 ELKIR-----LAPTSPIDYVPRFASELKLPG---EVESKAISILQKAGDKGLTSGRGPTG 284
Query: 219 LCGAALYVSALTHGLKFSKSDI 240
+ AA+Y++++ HG + ++ ++
Sbjct: 285 VAAAAIYIASVLHGTRKTQREV 306
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + I+ + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITNMSDRINLPRN--IIDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E+NV + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCS 220
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L G K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NL--GLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>sp|A4G0F2|TF2B_METM5 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=tfb PE=3 SV=1
Length = 339
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+ R P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSSRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDI 240
G+ AA+Y++++ G + ++ ++
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREV 311
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 139 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ R P L + ++ EL Y + + L + +K DP ++ +F
Sbjct: 197 SARMAGTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASE 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L G + + AR +L K I +G+ P G
Sbjct: 252 L--GLSDEAERQARQLLRDAKETGIHSGKSPVG 282
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G +I A Y AV +N +GR E + + +Y ACR+ + P L + S +N
Sbjct: 133 LGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEISKASEVN 192
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
++G Y L + L + LK P ++ +F ++L +K+ + DI+
Sbjct: 193 KKKIGKAYRHLAKELDLN-----LKPTTPFSYISQFCNKL--DLDKQAIVISEDIVRQAM 245
Query: 207 RDWITTGRKPSG 218
I++G+ P+G
Sbjct: 246 SMGISSGKGPTG 257
>sp|A8KBY2|BRF2_DANRE Transcription factor IIIB 50 kDa subunit OS=Danio rerio GN=brf2
PE=2 SV=1
Length = 423
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 33/224 (14%)
Query: 20 QLCCDRCGKV---------LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERL 70
Q C+ CG V L + + S F + A + N V G SR R
Sbjct: 23 QWVCEDCGSVVSEGLLTTTLSEESHSRAVPFFTSTAAFKKPCRNLVS------GFSRLRA 76
Query: 71 MEKAFDDMRQMKNA-LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ + F M++A N+ E + F I++++ + + C++ CRQ
Sbjct: 77 LCRIFRLSSSMEDASANLFER---AYNHPNFLHISLSKK-------QILAGCCMFHICRQ 126
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF------T 183
S P + L+ + Y++G +Y +L + L + + ++ S F + F
Sbjct: 127 NSWPVFMGTIGYLLDADNYQMGTIYQELTKSLNLQTTQVCITRMLES-FCYDFKLAPDEV 185
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
+ + +++ D +L WI TGR+P L AA+YV+
Sbjct: 186 EEVFSVAQQRLVDQTSALLELAADTWILTGRRPFPLFLAAVYVA 229
>sp|Q9HR45|TF2B4_HALSA Transcription initiation factor IIB 4 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbD PE=3
SV=1
Length = 328
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 19/199 (9%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS--------EYGASRERLMEKAFDDMRQ 80
++ D ST + A + LSG R +Q S+ER +++A ++ +
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +A G D + A Y A+ + GR E V S LY A RQ + P L + +
Sbjct: 149 MASAF--GLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEVA 206
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ ++ E+ Y Y+A E ++ + DP+ ++ +F L G+ V AR
Sbjct: 207 SVSRVDRGEIARTYR------YVARELSLEVAPTDPASYVPRFCSDLELSGD--VERRAR 258
Query: 200 DILASMKRDWITTGRKPSG 218
D+LA+ IT+G+ P G
Sbjct: 259 DLLAAAADAGITSGKSPVG 277
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 11/177 (6%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 11/177 (6%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E++V + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCS 220
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
L LP K+V A I + GR P + AA+Y+++ K ++ +I
Sbjct: 221 NLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,508,908
Number of Sequences: 539616
Number of extensions: 8175182
Number of successful extensions: 35651
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 33713
Number of HSP's gapped (non-prelim): 1538
length of query: 540
length of database: 191,569,459
effective HSP length: 122
effective length of query: 418
effective length of database: 125,736,307
effective search space: 52557776326
effective search space used: 52557776326
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)