Query 009187
Match_columns 540
No_of_seqs 263 out of 1115
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 20:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 6.6E-54 2.2E-58 447.2 9.9 248 3-254 23-312 (345)
2 3k7a_M Transcription initiatio 100.0 9E-52 3.1E-56 431.5 7.5 244 2-254 22-312 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 1E-37 3.6E-42 300.7 22.8 184 64-254 2-185 (200)
4 1c9b_A General transcription f 100.0 1.7E-34 5.7E-39 279.9 21.6 178 68-254 2-179 (207)
5 1zp2_A RNA polymerase II holoe 99.9 5.1E-22 1.7E-26 196.0 18.3 174 71-254 28-210 (235)
6 2i53_A Cyclin K; cell cycle, t 99.8 1.5E-19 5.1E-24 180.3 17.6 176 72-254 42-241 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.8 4.5E-19 1.5E-23 176.9 19.8 180 66-254 25-230 (257)
8 3rgf_B Cyclin-C; protein kinas 99.8 1.5E-18 5E-23 176.2 20.8 178 66-254 37-232 (285)
9 2b9r_A Human cyclin B1; cell c 99.8 2.4E-17 8.2E-22 165.9 19.8 174 72-254 39-215 (269)
10 1jkw_A Cyclin H; cell cycle, c 99.8 2.1E-17 7.1E-22 170.7 18.7 165 65-236 50-229 (323)
11 2pk2_A Cyclin-T1, protein TAT; 99.7 2.1E-18 7.2E-23 180.5 10.7 179 67-254 33-237 (358)
12 2cch_B Cyclin A2, cyclin-A; co 99.7 1.4E-16 4.8E-21 159.4 19.1 175 72-254 40-218 (260)
13 1ngm_B Transcription factor II 99.7 1.8E-18 6E-23 138.4 2.7 53 381-433 18-70 (72)
14 2w96_A G1/S-specific cyclin-D1 99.7 4.9E-16 1.7E-20 156.4 18.6 174 72-254 58-247 (271)
15 1g3n_C V-cyclin; cyclin-depend 99.6 4.6E-15 1.6E-19 148.1 18.0 176 72-254 52-238 (257)
16 2f2c_A Cyclin homolog, V-cycli 99.6 2E-14 6.7E-19 143.3 20.1 176 72-254 53-238 (254)
17 1w98_B Cyclin E, G1/S-specific 99.6 7.4E-14 2.5E-18 141.5 18.6 169 72-254 51-232 (283)
18 3g33_B CCND3 protein; Ser/Thr 99.5 3.1E-13 1.1E-17 138.5 19.5 176 72-254 72-257 (306)
19 1ais_B TFB TFIIB, protein (tra 99.4 2.3E-12 7.9E-17 123.5 12.0 92 74-167 108-199 (200)
20 1dl6_A Transcription factor II 99.2 4.8E-12 1.6E-16 98.3 4.2 45 2-46 12-56 (58)
21 1c9b_A General transcription f 99.1 2.2E-10 7.5E-15 110.3 11.5 92 74-167 102-193 (207)
22 1pft_A TFIIB, PFTFIIBN; N-term 99.0 1.4E-10 4.9E-15 87.2 4.6 44 2-45 6-49 (50)
23 3k1f_M Transcription initiatio 98.9 2E-10 6.8E-15 106.4 2.5 43 3-45 23-67 (197)
24 1f5q_B Gamma herpesvirus cycli 98.9 3.9E-08 1.3E-12 97.9 17.7 148 73-227 51-203 (252)
25 4bbr_M Transcription initiatio 98.8 8.8E-10 3E-14 114.7 0.0 89 73-163 234-322 (345)
26 3k7a_M Transcription initiatio 98.5 8.8E-09 3E-13 107.1 0.0 86 75-162 236-321 (345)
27 3h4c_A Transcription factor TF 97.0 0.0062 2.1E-07 57.9 12.2 130 74-207 15-147 (260)
28 1zp2_A RNA polymerase II holoe 96.8 0.0043 1.5E-07 60.3 9.6 67 176-244 32-99 (235)
29 2cch_B Cyclin A2, cyclin-A; co 96.8 0.0034 1.2E-07 62.0 8.9 88 74-163 139-228 (260)
30 2b9r_A Human cyclin B1; cell c 96.7 0.0021 7E-08 64.1 6.5 87 74-162 138-224 (269)
31 3rgf_B Cyclin-C; protein kinas 96.5 0.01 3.6E-07 59.5 10.1 85 75-163 158-242 (285)
32 2ivx_A Cyclin-T2; transcriptio 96.4 0.016 5.6E-07 56.9 10.8 67 176-244 35-101 (257)
33 2w96_A G1/S-specific cyclin-D1 96.4 0.0086 2.9E-07 59.5 8.8 91 74-166 157-260 (271)
34 3m03_A ORC6, origin recognitio 96.3 0.025 8.5E-07 47.7 9.7 79 78-160 6-90 (95)
35 2i53_A Cyclin K; cell cycle, t 96.2 0.023 7.9E-07 55.7 10.8 67 176-244 45-111 (258)
36 2f2c_A Cyclin homolog, V-cycli 96.0 0.025 8.7E-07 55.5 10.0 86 75-162 153-247 (254)
37 1jkw_A Cyclin H; cell cycle, c 96.0 0.029 1E-06 57.3 10.4 68 177-244 62-129 (323)
38 1g3n_C V-cyclin; cyclin-depend 95.8 0.025 8.6E-07 55.6 8.8 89 74-162 151-247 (257)
39 2pk2_A Cyclin-T1, protein TAT; 95.7 0.032 1.1E-06 57.9 9.7 67 176-244 42-108 (358)
40 4ell_A Retinoblastoma-associat 95.5 0.03 1E-06 59.0 8.7 73 72-145 280-354 (411)
41 1qxf_A GR2, 30S ribosomal prot 95.4 0.0063 2.2E-07 47.7 2.0 47 2-59 8-54 (66)
42 2r7g_A PP110, retinoblastoma-a 95.3 0.044 1.5E-06 56.6 8.7 73 71-144 215-289 (347)
43 3j20_W 30S ribosomal protein S 95.1 0.0083 2.8E-07 46.6 1.9 45 2-57 16-60 (63)
44 4elj_A Retinoblastoma-associat 94.8 0.063 2.2E-06 59.7 8.8 73 71-144 524-598 (656)
45 2xzm_6 RPS27E; ribosome, trans 94.8 0.01 3.4E-07 48.4 1.8 32 2-33 33-64 (81)
46 3u5c_b RP61, YS20, 40S ribosom 94.6 0.012 4.2E-07 47.9 1.8 32 2-33 35-66 (82)
47 3g33_B CCND3 protein; Ser/Thr 94.2 0.15 5.1E-06 51.6 9.3 89 75-163 172-267 (306)
48 3iz6_X 40S ribosomal protein S 94.2 0.014 4.8E-07 48.0 1.3 32 2-33 37-68 (86)
49 2js4_A UPF0434 protein BB2007; 94.1 0.027 9.2E-07 44.9 2.9 28 2-30 9-36 (70)
50 2pk7_A Uncharacterized protein 94.0 0.031 1E-06 44.5 3.0 28 2-30 9-36 (69)
51 2jny_A Uncharacterized BCR; st 93.9 0.032 1.1E-06 44.1 2.8 28 2-30 11-38 (67)
52 2jr6_A UPF0434 protein NMA0874 93.8 0.031 1.1E-06 44.3 2.7 29 2-31 9-37 (68)
53 1vq8_Z 50S ribosomal protein L 93.8 0.026 8.9E-07 46.5 2.3 32 3-35 29-60 (83)
54 2hf1_A Tetraacyldisaccharide-1 93.6 0.035 1.2E-06 44.0 2.6 29 2-31 9-37 (68)
55 2qdj_A Retinoblastoma-associat 93.6 0.23 8E-06 50.3 9.3 72 77-151 5-81 (304)
56 3j20_Y 30S ribosomal protein S 92.9 0.064 2.2E-06 39.9 2.9 27 3-30 21-47 (50)
57 1w98_B Cyclin E, G1/S-specific 91.7 0.59 2E-05 46.6 9.3 82 177-260 55-147 (283)
58 2k4x_A 30S ribosomal protein S 91.2 0.11 3.7E-06 39.4 2.5 28 1-29 18-45 (55)
59 2pmi_B PHO85 cyclin PHO80, ami 88.8 6.4 0.00022 39.5 13.8 105 74-186 77-185 (293)
60 3m03_A ORC6, origin recognitio 87.1 1.5 5E-05 36.9 6.7 72 179-254 6-83 (95)
61 4elj_A Retinoblastoma-associat 86.8 2.8 9.5E-05 46.7 10.6 77 77-159 7-88 (656)
62 1qyp_A RNA polymerase II; tran 86.5 0.35 1.2E-05 36.5 2.4 31 2-32 16-55 (57)
63 3h0g_I DNA-directed RNA polyme 84.7 0.64 2.2E-05 40.2 3.5 31 1-31 4-37 (113)
64 1twf_I B12.6, DNA-directed RNA 82.0 0.57 1.9E-05 41.1 2.1 31 1-31 4-37 (122)
65 2kpi_A Uncharacterized protein 81.8 0.82 2.8E-05 34.6 2.6 25 3-30 12-38 (56)
66 1k81_A EIF-2-beta, probable tr 81.6 0.59 2E-05 32.2 1.6 29 2-30 1-31 (36)
67 2akl_A PHNA-like protein PA012 80.2 0.96 3.3E-05 40.0 2.8 27 3-31 29-55 (138)
68 2k5r_A Uncharacterized protein 79.9 0.81 2.8E-05 38.6 2.2 13 18-30 51-63 (97)
69 3j21_i 50S ribosomal protein L 78.3 1.1 3.6E-05 36.8 2.3 32 3-35 37-68 (83)
70 3qt1_I DNA-directed RNA polyme 78.0 1.1 3.8E-05 39.9 2.6 30 1-30 24-56 (133)
71 3jyw_9 60S ribosomal protein L 77.5 1.2 4.1E-05 35.5 2.4 32 3-35 28-59 (72)
72 3iz5_m 60S ribosomal protein L 77.5 1.2 4.2E-05 37.1 2.5 30 3-33 38-67 (92)
73 1nui_A DNA primase/helicase; z 77.0 1.2 4E-05 43.4 2.8 26 3-29 16-42 (255)
74 3izc_m 60S ribosomal protein R 76.4 1.3 4.5E-05 36.9 2.4 30 3-33 38-67 (92)
75 1twf_L ABC10-alpha, DNA-direct 76.0 0.76 2.6E-05 36.5 0.9 27 3-31 30-57 (70)
76 3cc2_Z 50S ribosomal protein L 75.9 1 3.5E-05 39.1 1.7 31 3-34 62-92 (116)
77 1ffk_W Ribosomal protein L37AE 75.5 1.2 4.2E-05 35.6 1.9 32 3-35 29-60 (73)
78 2apo_B Ribosome biogenesis pro 75.5 0.79 2.7E-05 35.3 0.8 35 1-45 6-40 (60)
79 4a17_Y RPL37A, 60S ribosomal p 72.9 1.5 5.2E-05 37.2 2.0 30 3-33 38-67 (103)
80 1dxg_A Desulforedoxin; non-hem 72.5 1.6 5.5E-05 29.9 1.7 24 3-28 8-31 (36)
81 1gh9_A 8.3 kDa protein (gene M 72.5 1.3 4.4E-05 35.3 1.3 27 2-31 5-31 (71)
82 2lnb_A Z-DNA-binding protein 1 70.0 5.1 0.00017 32.4 4.3 46 121-166 22-67 (80)
83 1tfi_A Transcriptional elongat 68.5 2.1 7.3E-05 31.6 1.7 28 2-29 10-46 (50)
84 1t6s_A Conserved hypothetical 67.8 15 0.00053 33.5 7.8 100 117-247 10-121 (162)
85 3lwf_A LIN1550 protein, putati 66.9 7.8 0.00027 35.2 5.6 48 113-160 24-71 (159)
86 3oou_A LIN2118 protein; protei 66.3 21 0.00071 29.3 7.8 71 78-157 24-95 (108)
87 1f5q_B Gamma herpesvirus cycli 65.6 34 0.0012 33.2 10.3 85 74-162 149-241 (252)
88 3pvv_A Chromosomal replication 65.4 16 0.00055 30.7 6.9 70 92-163 9-80 (101)
89 3j21_g 50S ribosomal protein L 64.3 2.1 7.3E-05 31.8 1.0 22 3-29 16-37 (51)
90 3o9x_A Uncharacterized HTH-typ 63.8 2.8 9.7E-05 36.2 1.9 20 133-152 84-103 (133)
91 6rxn_A Rubredoxin; electron tr 63.4 2.4 8.1E-05 30.9 1.1 24 3-29 6-39 (46)
92 2aus_D NOP10, ribosome biogene 62.0 2.2 7.6E-05 32.8 0.7 35 1-45 5-39 (60)
93 2k9s_A Arabinose operon regula 60.3 22 0.00075 29.1 6.8 40 118-157 5-44 (107)
94 3lsg_A Two-component response 59.9 27 0.00092 28.3 7.3 40 118-157 4-43 (103)
95 1gnf_A Transcription factor GA 59.0 3.4 0.00012 30.0 1.2 28 3-30 6-35 (46)
96 3t8r_A Staphylococcus aureus C 58.7 9.7 0.00033 33.7 4.5 45 116-160 11-55 (143)
97 3oou_A LIN2118 protein; protei 58.6 24 0.00081 29.0 6.8 40 117-157 6-45 (108)
98 3ga8_A HTH-type transcriptiona 58.5 4.1 0.00014 32.4 1.8 11 2-12 3-13 (78)
99 2y75_A HTH-type transcriptiona 57.8 15 0.00052 31.3 5.6 44 117-160 10-53 (129)
100 4rxn_A Rubredoxin; electron tr 57.6 4.2 0.00014 30.6 1.6 7 22-28 38-44 (54)
101 2ct7_A Ring finger protein 31; 57.0 7 0.00024 31.7 3.0 27 3-30 27-53 (86)
102 3h4c_A Transcription factor TF 56.7 22 0.00075 33.9 6.6 51 190-240 28-81 (260)
103 1wii_A Hypothetical UPF0222 pr 55.8 4.9 0.00017 33.0 1.8 30 3-32 25-59 (85)
104 3u50_C Telomerase-associated p 55.7 5.9 0.0002 36.7 2.6 25 3-29 44-68 (172)
105 1ylf_A RRF2 family protein; st 55.5 13 0.00044 33.0 4.8 45 115-160 13-57 (149)
106 1vk6_A NADH pyrophosphatase; 1 55.1 6.6 0.00022 38.7 3.0 32 1-33 107-138 (269)
107 3mkl_A HTH-type transcriptiona 54.4 34 0.0011 28.7 7.1 85 78-187 26-113 (120)
108 3mn2_A Probable ARAC family tr 54.4 29 0.00098 28.4 6.6 39 118-157 4-42 (108)
109 2z99_A Putative uncharacterize 53.3 19 0.00064 34.6 5.8 103 116-249 17-129 (219)
110 2vut_I AREA, nitrogen regulato 52.4 4.2 0.00014 29.1 0.8 27 3-29 3-31 (43)
111 3cng_A Nudix hydrolase; struct 52.3 8.3 0.00028 35.2 3.1 29 1-29 3-34 (189)
112 4esj_A Type-2 restriction enzy 51.8 6.2 0.00021 38.4 2.1 30 2-31 35-67 (257)
113 2r7g_A PP110, retinoblastoma-a 51.7 1.1E+02 0.0037 31.3 11.5 131 116-247 105-291 (347)
114 3mn2_A Probable ARAC family tr 51.7 34 0.0012 27.9 6.6 70 78-157 21-94 (108)
115 2g2k_A EIF-5, eukaryotic trans 51.4 6.3 0.00022 36.5 2.1 28 2-29 97-128 (170)
116 2k9s_A Arabinose operon regula 51.4 39 0.0013 27.6 6.9 71 78-157 23-94 (107)
117 1twf_I B12.6, DNA-directed RNA 51.2 12 0.00042 32.4 3.8 32 2-33 73-113 (122)
118 2kae_A GATA-type transcription 49.0 5.1 0.00018 31.8 0.9 27 3-30 10-40 (71)
119 4gat_A Nitrogen regulatory pro 48.7 4.2 0.00014 31.8 0.3 29 3-31 11-41 (66)
120 3oio_A Transcriptional regulat 47.8 44 0.0015 27.5 6.7 71 78-157 26-97 (113)
121 3lsg_A Two-component response 47.6 70 0.0024 25.7 7.9 72 77-157 21-93 (103)
122 1j1v_A Chromosomal replication 47.6 36 0.0012 28.0 6.0 70 92-163 5-77 (94)
123 3e6c_C CPRK, cyclic nucleotide 47.1 60 0.0021 30.1 8.4 29 132-160 176-204 (250)
124 3dfx_A Trans-acting T-cell-spe 46.8 4.8 0.00017 31.2 0.4 29 3-31 9-39 (63)
125 2kn9_A Rubredoxin; metalloprot 46.4 7 0.00024 31.8 1.3 15 19-33 26-40 (81)
126 2fiy_A Protein FDHE homolog; F 46.0 9.3 0.00032 38.6 2.5 29 2-30 183-218 (309)
127 2zjr_Z 50S ribosomal protein L 46.0 7.3 0.00025 29.8 1.3 24 2-31 31-54 (60)
128 2heo_A Z-DNA binding protein 1 45.8 28 0.00094 26.5 4.7 33 128-160 20-52 (67)
129 3la7_A Global nitrogen regulat 45.2 47 0.0016 30.9 7.3 30 131-160 191-220 (243)
130 3oio_A Transcriptional regulat 43.8 44 0.0015 27.5 6.1 40 117-157 8-47 (113)
131 2jt1_A PEFI protein; solution 43.2 10 0.00036 30.2 1.9 23 232-254 22-44 (77)
132 2fiy_A Protein FDHE homolog; F 43.1 13 0.00046 37.5 3.1 30 2-31 223-264 (309)
133 3b02_A Transcriptional regulat 43.0 47 0.0016 29.6 6.6 29 132-160 138-166 (195)
134 2jt1_A PEFI protein; solution 42.9 31 0.0011 27.4 4.7 30 131-160 22-51 (77)
135 3v2d_5 50S ribosomal protein L 42.8 7.2 0.00025 29.9 0.8 24 2-31 31-54 (60)
136 2qdj_A Retinoblastoma-associat 42.5 69 0.0024 32.1 8.3 73 180-254 7-83 (304)
137 1ug2_A 2610100B20RIK gene prod 42.2 51 0.0017 27.3 5.8 42 122-163 43-86 (95)
138 1vzi_A Desulfoferrodoxin; ferr 41.7 10 0.00034 33.3 1.7 27 3-31 9-35 (126)
139 1yk4_A Rubredoxin, RD; electro 41.5 10 0.00036 28.1 1.5 12 21-32 3-14 (52)
140 2v3b_B Rubredoxin 2, rubredoxi 41.4 10 0.00035 28.5 1.4 12 21-32 4-15 (55)
141 1xd7_A YWNA; structural genomi 41.0 33 0.0011 30.1 5.1 44 114-160 7-50 (145)
142 1u8b_A ADA polyprotein; protei 40.9 27 0.00093 29.8 4.4 38 131-181 91-128 (133)
143 1dx8_A Rubredoxin; electron tr 40.9 10 0.00035 29.9 1.4 7 22-28 42-48 (70)
144 2jpc_A SSRB; DNA binding prote 40.8 26 0.0009 25.4 3.8 31 134-164 14-44 (61)
145 4e2x_A TCAB9; kijanose, tetron 40.4 9.9 0.00034 39.0 1.7 22 21-42 54-75 (416)
146 1bl0_A Protein (multiple antib 40.2 53 0.0018 27.8 6.2 71 78-157 30-101 (129)
147 3dv8_A Transcriptional regulat 39.9 55 0.0019 29.4 6.7 46 115-160 148-196 (220)
148 2pmi_B PHO85 cyclin PHO80, ami 39.5 1.4E+02 0.0048 29.8 9.8 77 173-251 75-155 (293)
149 2fmy_A COOA, carbon monoxide o 39.3 60 0.002 29.4 6.8 29 132-160 166-194 (220)
150 1s24_A Rubredoxin 2; electron 38.9 11 0.00038 31.0 1.4 16 18-33 33-48 (87)
151 3p2a_A Thioredoxin 2, putative 38.7 10 0.00035 32.6 1.3 34 1-34 5-39 (148)
152 3k69_A Putative transcription 38.6 26 0.00087 31.7 4.0 44 116-160 12-55 (162)
153 1l1o_C Replication protein A 7 38.2 15 0.00051 33.9 2.4 27 3-31 45-73 (181)
154 3bvo_A CO-chaperone protein HS 37.8 14 0.00049 35.0 2.3 28 3-32 12-39 (207)
155 1bl0_A Protein (multiple antib 37.8 58 0.002 27.6 6.1 41 116-157 11-51 (129)
156 2kdx_A HYPA, hydrogenase/ureas 37.1 11 0.00038 32.4 1.2 8 22-29 92-99 (119)
157 2gau_A Transcriptional regulat 37.0 80 0.0027 28.7 7.4 29 132-160 179-207 (232)
158 1tc3_C Protein (TC3 transposas 36.5 20 0.00068 24.1 2.3 21 234-254 21-41 (51)
159 3ulq_B Transcriptional regulat 36.5 38 0.0013 27.4 4.4 31 134-164 45-75 (90)
160 2oz6_A Virulence factor regula 36.2 48 0.0016 29.5 5.6 29 132-160 163-191 (207)
161 2p7v_B Sigma-70, RNA polymeras 35.5 44 0.0015 24.9 4.4 33 132-164 24-56 (68)
162 1fse_A GERE; helix-turn-helix 34.2 48 0.0017 24.7 4.5 31 134-164 27-57 (74)
163 3ryp_A Catabolite gene activat 33.9 55 0.0019 29.2 5.6 29 132-160 166-194 (210)
164 1ovx_A ATP-dependent CLP prote 33.9 15 0.00052 28.8 1.4 26 1-28 18-48 (67)
165 4ffb_C Protein STU2; tubulin f 33.8 2.9E+02 0.0099 26.0 11.1 140 63-206 64-211 (278)
166 1zyb_A Transcription regulator 33.6 70 0.0024 29.3 6.4 29 132-160 185-213 (232)
167 3h0g_L DNA-directed RNA polyme 33.4 19 0.00064 27.9 1.8 24 3-28 23-46 (63)
168 3fx3_A Cyclic nucleotide-bindi 33.4 63 0.0022 29.5 6.0 32 131-163 176-207 (237)
169 2x48_A CAG38821; archeal virus 33.1 18 0.0006 25.9 1.6 22 233-254 30-51 (55)
170 2kao_A Methionine-R-sulfoxide 33.0 20 0.00069 31.4 2.2 30 1-30 1-30 (124)
171 2jmo_A Parkin; IBR, E3 ligase, 32.8 23 0.0008 28.2 2.4 29 1-30 25-60 (80)
172 3dkw_A DNR protein; CRP-FNR, H 32.8 59 0.002 29.4 5.6 30 131-160 176-205 (227)
173 2zcw_A TTHA1359, transcription 32.7 62 0.0021 28.9 5.7 29 132-160 145-173 (202)
174 3bro_A Transcriptional regulat 32.5 1.6E+02 0.0055 24.3 8.1 39 122-160 39-77 (141)
175 2zkr_2 60S ribosomal protein L 32.5 18 0.00061 30.3 1.7 22 3-28 18-39 (97)
176 2nnn_A Probable transcriptiona 31.8 2E+02 0.0068 23.6 8.6 28 133-160 52-79 (140)
177 1je8_A Nitrate/nitrite respons 31.5 52 0.0018 25.8 4.3 31 134-164 37-67 (82)
178 1x3u_A Transcriptional regulat 31.3 54 0.0018 24.9 4.3 32 133-164 31-62 (79)
179 1ku3_A Sigma factor SIGA; heli 29.5 68 0.0023 24.2 4.6 31 132-162 29-59 (73)
180 3c57_A Two component transcrip 29.4 59 0.002 26.2 4.5 31 134-164 43-73 (95)
181 1p4w_A RCSB; solution structur 29.1 60 0.002 26.8 4.5 31 134-164 50-80 (99)
182 3a43_A HYPD, hydrogenase nicke 28.9 14 0.00048 32.8 0.5 18 14-31 64-81 (139)
183 3d0s_A Transcriptional regulat 28.6 1.1E+02 0.0037 27.7 6.7 29 132-160 176-204 (227)
184 3r0a_A Putative transcriptiona 28.3 72 0.0025 26.9 5.0 38 123-160 31-69 (123)
185 3mkl_A HTH-type transcriptiona 28.2 67 0.0023 26.7 4.7 39 117-156 8-46 (120)
186 2ds5_A CLPX, ATP-dependent CLP 28.1 20 0.00068 26.5 1.1 24 1-26 11-39 (51)
187 2lk0_A RNA-binding protein 5; 27.9 23 0.0008 23.4 1.3 13 17-29 2-14 (32)
188 3kcc_A Catabolite gene activat 27.8 1E+02 0.0035 28.9 6.6 29 132-160 216-244 (260)
189 1tty_A Sigma-A, RNA polymerase 27.8 72 0.0025 25.1 4.6 32 132-163 37-68 (87)
190 3iwz_A CAP-like, catabolite ac 27.7 79 0.0027 28.6 5.5 29 132-160 186-214 (230)
191 1qbj_A Protein (double-strande 27.5 64 0.0022 25.7 4.2 29 132-160 26-54 (81)
192 4hc9_A Trans-acting T-cell-spe 26.9 18 0.0006 31.3 0.8 29 3-31 7-37 (115)
193 1ft9_A Carbon monoxide oxidati 26.4 66 0.0023 29.2 4.7 29 132-160 162-190 (222)
194 2riq_A Poly [ADP-ribose] polym 26.3 31 0.0011 31.5 2.3 22 3-29 80-101 (160)
195 2bgc_A PRFA; bacterial infecti 25.9 1.2E+02 0.0042 27.7 6.6 29 132-160 167-197 (238)
196 2o8x_A Probable RNA polymerase 25.8 79 0.0027 23.1 4.3 29 134-162 32-60 (70)
197 1qgp_A Protein (double strande 25.8 1E+02 0.0035 24.1 5.1 30 131-160 29-58 (77)
198 3hug_A RNA polymerase sigma fa 25.7 72 0.0025 25.3 4.3 29 134-162 54-82 (92)
199 1d0q_A DNA primase; zinc-bindi 25.6 38 0.0013 28.2 2.6 26 3-28 39-66 (103)
200 4gop_C Putative uncharacterize 25.2 35 0.0012 35.8 2.9 28 3-32 310-339 (444)
201 2htj_A P fimbrial regulatory p 25.1 1.3E+02 0.0045 23.1 5.7 29 132-160 13-41 (81)
202 3e97_A Transcriptional regulat 25.0 1.4E+02 0.0048 27.0 6.8 45 116-160 150-202 (231)
203 2l8n_A Transcriptional repress 24.9 37 0.0013 26.0 2.2 22 132-153 8-29 (67)
204 3kz3_A Repressor protein CI; f 24.5 1E+02 0.0036 23.3 4.9 42 133-188 25-66 (80)
205 4ev0_A Transcription regulator 24.5 89 0.0031 27.9 5.2 29 132-160 162-190 (216)
206 2rnj_A Response regulator prot 24.2 55 0.0019 26.0 3.3 31 134-164 45-75 (91)
207 2k1p_A Zinc finger RAN-binding 24.2 29 0.00098 23.1 1.2 13 17-29 3-15 (33)
208 4fe7_A Xylose operon regulator 24.1 1.8E+02 0.006 29.3 7.9 83 78-182 324-407 (412)
209 1u5k_A Hypothetical protein; O 23.9 37 0.0013 32.4 2.5 26 3-28 152-178 (244)
210 2jrp_A Putative cytoplasmic pr 23.5 47 0.0016 26.9 2.6 27 3-32 4-30 (81)
211 4hc9_A Trans-acting T-cell-spe 23.4 22 0.00075 30.7 0.7 9 20-28 59-67 (115)
212 3nrv_A Putative transcriptiona 23.3 2.4E+02 0.008 23.5 7.5 31 129-160 51-81 (148)
213 1xn7_A Hypothetical protein YH 23.2 39 0.0013 26.8 2.1 20 234-253 16-35 (78)
214 3eco_A MEPR; mutlidrug efflux 23.0 2.5E+02 0.0085 23.1 7.5 39 122-160 36-74 (139)
215 2lr8_A CAsp8-associated protei 28.4 18 0.00061 28.4 0.0 41 122-162 24-65 (70)
216 2xzm_9 RPS31E; ribosome, trans 22.5 43 0.0015 31.3 2.6 27 3-30 115-141 (189)
217 1uxc_A FRUR (1-57), fructose r 22.4 69 0.0024 24.3 3.3 20 135-154 2-21 (65)
218 2kv1_A Methionine-R-sulfoxide 22.3 52 0.0018 28.8 2.8 37 1-38 1-40 (124)
219 1y07_A Desulfoferrodoxin (RBO) 21.9 31 0.0011 30.2 1.4 28 3-32 9-37 (128)
220 3q87_A Putative uncharacterize 21.9 20 0.00067 31.5 0.1 16 16-31 95-110 (125)
221 3c5k_A HD6, histone deacetylas 21.6 44 0.0015 28.4 2.2 24 3-33 26-49 (109)
222 1xwr_A Regulatory protein CII; 21.6 71 0.0024 26.6 3.5 19 134-152 24-42 (97)
223 3ech_A MEXR, multidrug resista 20.7 2.3E+02 0.008 23.5 6.9 28 133-160 51-78 (142)
224 1jhg_A Trp operon repressor; c 20.5 47 0.0016 28.0 2.1 22 233-254 57-78 (101)
225 2pg4_A Uncharacterized protein 20.3 1.2E+02 0.004 24.0 4.6 33 128-160 25-58 (95)
226 2olm_A Nucleoporin-like protei 20.2 25 0.00087 31.3 0.5 29 3-31 27-56 (140)
227 1jhg_A Trp operon repressor; c 20.1 97 0.0033 26.0 4.0 28 131-159 56-83 (101)
228 1d5y_A ROB transcription facto 20.0 93 0.0032 29.7 4.6 39 118-157 5-43 (292)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=6.6e-54 Score=447.21 Aligned_cols=248 Identities=16% Similarity=0.283 Sum_probs=139.7
Q ss_pred CCCCCCC--CCeeeecCCCceecCcccceeccccccccccccccCC----C--CccccCc------------cce-----
Q 009187 3 WCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA----G--QSQLSGN------------FVR----- 57 (540)
Q Consensus 3 ~Cp~Cgs--~~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s~----G--~s~v~G~------------~v~----- 57 (540)
.||+||+ +.+++|+.+|++||++||+||+|++||.+|||+.+++ | .+|+++. .++
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~~~ 102 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETT 102 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCSSC
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCCCc
Confidence 6999997 5899999999999999999999999999999997642 2 3555432 111
Q ss_pred ---------eeccc-ccchHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHH
Q 009187 58 ---------TIQSE-YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127 (540)
Q Consensus 58 ---------~~~~~-~~~srer~L~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiAC 127 (540)
.||.+ ..+++|++|.+|++.|.++|++|+|| ++|+++|..||++++++++++||+.+.++|||||+||
T Consensus 103 ~~~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiAC 180 (345)
T 4bbr_M 103 DMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180 (345)
T ss_dssp CHHHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 12222 24788999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHHhhcccccc-------ccccCChhhHHHHHHHhhCCCCCHHHHHHHHH
Q 009187 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-------VLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200 (540)
Q Consensus 128 R~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~~~p~-------~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~ 200 (540)
|++++||||+||+++++|++++|+++|+.|.+.|++...++ ..+.+||+.||+|||+.|++ +++|.+.|++
T Consensus 181 R~~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l--~~~v~~~A~~ 258 (345)
T 4bbr_M 181 RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL--PMQVTTSAEY 258 (345)
T ss_dssp HHTCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC----------------------------------------------
T ss_pred HhcCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 99999999999999999999999999999999999752110 01248999999999999985 7899999999
Q ss_pred HHHhhcccccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 201 Iv~~m~~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
|+++|.++|+++||+|.||||||||+|++++|+++|+++|+++++|++.|||++
T Consensus 259 i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~r 312 (345)
T 4bbr_M 259 TAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSG 312 (345)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-52 Score=431.48 Aligned_cols=244 Identities=15% Similarity=0.271 Sum_probs=136.8
Q ss_pred CCCCCCCCC--CeeeecCCCceecCcccceeccccccccccccccCC------CCccccCc------------cce----
Q 009187 2 VWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA------GQSQLSGN------------FVR---- 57 (540)
Q Consensus 2 ~~Cp~Cgs~--~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s~------G~s~v~G~------------~v~---- 57 (540)
+.||+||+. .+++|+.+|++||++||+||+|++||+++||+.+++ +.+++++. .++
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~~ 101 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGET 101 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTTS
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCCC
Confidence 479999996 689999999999999999999999999999876542 13444321 111
Q ss_pred ----------eeccc-ccchHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHH
Q 009187 58 ----------TIQSE-YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126 (540)
Q Consensus 58 ----------~~~~~-~~~srer~L~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiA 126 (540)
.||.+ ..+++|++|++|+..|+++|.+|+|| +.++++|..||+++++.++++||+.+.|+|||||+|
T Consensus 102 ~~~~~~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiA 179 (345)
T 3k7a_M 102 TDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCC--HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTT
T ss_pred CCchhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence 12221 24788999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHHhh------------ccccccccccCChhhHHHHHHHhhCCCCCHHH
Q 009187 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY------------IADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 194 (540)
Q Consensus 127 CR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~------------i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V 194 (540)
||++++|+||+||++++++++++|+++|+.|.+.|+ +..++ ++|+.||+|||+.|++ +++|
T Consensus 180 cR~e~~prtl~ei~~~~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~-----~~p~~~i~Rf~~~L~l--~~~v 252 (345)
T 3k7a_M 180 CRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSG-----AQNLTYIPRFCSHLGL--PMQV 252 (345)
T ss_dssp SBTTBSSCCHHHHHHSSSCCSHHHHHHHHHHHHHHTCC------------------------------------------
T ss_pred HHHcCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccccccccccccCC-----CCHHHHHHHHHHHcCC--CHHH
Confidence 999999999999999999999999999999999999 55554 8999999999999985 6899
Q ss_pred HHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 195 ~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
.+.|++|++.|.++|++.||+|.+|||||||||++++|+++|+++|++++++++.||+++
T Consensus 253 ~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ 312 (345)
T 3k7a_M 253 TTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSG 312 (345)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=1e-37 Score=300.70 Aligned_cols=184 Identities=27% Similarity=0.445 Sum_probs=172.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q 009187 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143 (540)
Q Consensus 64 ~~srer~L~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl 143 (540)
++++|++|++|++.|.++|..|+|| +.++++|..||++++++++++||++..++|||||+|||++++|++++||++++
T Consensus 2 ~~~~er~l~~a~~~I~~~~~~L~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~ 79 (200)
T 1ais_B 2 SDAAERNLAFALSELDRITAQLKLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIA 79 (200)
T ss_dssp ------CHHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4688999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHH
Q 009187 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223 (540)
Q Consensus 144 ~V~~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAA 223 (540)
++++++|+++|+.|.+.|++..+++ .++|+.||+||++.|++ +.++.+.|++|++.+.++|++.||+|.+|||||
T Consensus 80 ~v~~~~i~~~~~~l~~~L~~~~~~~---~~~p~~~i~r~~~~L~l--~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 80 RVDKKEIGRSYRFIARNLNLTPKKL---FVKPTDYVNKFADELGL--SEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCTTTT---CCCGGGGHHHHHHHHTC--CHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCCcC---CCCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 9999999999999999999976542 27999999999999985 789999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 224 LYVSALTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 224 LylAa~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
||+||+++|+++|+++|+.++++++.||+++
T Consensus 155 ly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~ 185 (200)
T 1ais_B 155 LYIASLLEGEKRTQREVAEVARVTEVTVRNR 185 (200)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999999988
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=1.7e-34 Score=279.92 Aligned_cols=178 Identities=21% Similarity=0.364 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCH
Q 009187 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINV 147 (540)
Q Consensus 68 er~L~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~ 147 (540)
||+|++|++.|.++|..|+|| +.++++|..||++++.+++++|+++..++|||||+|||.+++|++++||+.+++++.
T Consensus 2 er~l~~a~~~I~~~~~~L~L~--~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~ 79 (207)
T 1c9b_A 2 DRAMMNAFKEITTMADRINLP--RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISK 79 (207)
T ss_dssp GGGHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCH
T ss_pred chHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCH
Confidence 689999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHH
Q 009187 148 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (540)
Q Consensus 148 ~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylA 227 (540)
++|+++|+.|++.|+++.++ .+|..||.||++.|++ +.++.+.|+.|++.+.++|++.||+|.+|||||||+|
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~-----~~p~~~l~r~~~~l~l--~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA 152 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDL-----ITTGDFMSRFCSNLCL--PKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMA 152 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-----CCTHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCc-----CCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHH
Confidence 99999999999999998766 8999999999999985 7899999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 228 ALTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 228 a~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
++++|+++++++|++++++++.||+++
T Consensus 153 ~~~~~~~~~~~~i~~~~~v~~~tI~~~ 179 (207)
T 1c9b_A 153 SQASAEKRTQKEIGDIAGVADVTIRQS 179 (207)
T ss_dssp HHTSSSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999998
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.88 E-value=5.1e-22 Score=195.97 Aligned_cols=174 Identities=14% Similarity=0.113 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCC-CchhHHHHHHHHHHHHhcCCCCCHHHHHHHh------
Q 009187 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG-RRTEQVQASCLYLACRQKSKPFLLIDFSNYL------ 143 (540)
Q Consensus 71 L~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rG-R~~~~vaAACLYiACR~e~~prtL~DIs~vl------ 143 (540)
...+.+.|.+++..|+|| +.++.+|..||++++..+.+++ ++...|++||||+|||.++.|++++||+.++
T Consensus 28 R~~~~~~i~~v~~~l~L~--~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~ 105 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLR--QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL 105 (235)
T ss_dssp HHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccc
Confidence 567889999999999999 9999999999999999998888 9999999999999999999999999999876
Q ss_pred --CcCHHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHH
Q 009187 144 --NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCG 221 (540)
Q Consensus 144 --~V~~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAa 221 (540)
.++..+|.+.++.|++.|+++..+ .+|..||.||++.++. +.++.+.|+.+++.+..+++..|++|++||+
T Consensus 106 ~~~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~~l~~~~~~~~~--~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAa 178 (235)
T 1zp2_A 106 KVKLSRSNISEIEFEIISVLDAFLIV-----HHPYTSLEQAFHDGII--NQKQLEFAWSIVNDSYASSLCLMAHPHQLAY 178 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTCCCC-----CCTHHHHHHHHHTTSS--CHHHHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHCCCcEEe-----cChHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCchhccCHHHHHH
Confidence 578999999999999999998766 8999999999998864 7899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 222 AALYVSALTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 222 AALylAa~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
||||+|++++|.+.+ .+.....++++.+|++.
T Consensus 179 Aai~lA~~~~~~~~~-~~~~~~~~~~~~~i~~~ 210 (235)
T 1zp2_A 179 AALLISCCNDENTIP-KLLDLIKSTDAFKVILC 210 (235)
T ss_dssp HHHHHHHTSCTTHHH-HHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC-CCcchhhcCCHHHHHHH
Confidence 999999999987653 22222226777777665
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.82 E-value=1.5e-19 Score=180.29 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc------
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------ 145 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V------ 145 (540)
..+.+.|.+++..|+|| +.+..+|..||++++..+.+++++...+++||||+|||.++.|++++||+.+...
T Consensus 42 ~~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~ 119 (258)
T 2i53_A 42 REGARFIFDVGTRLGLH--YDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQ 119 (258)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhh
Confidence 46789999999999999 9999999999999999999999999999999999999999999999999976431
Q ss_pred -------CHHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcccccccCCCh
Q 009187 146 -------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKP 216 (540)
Q Consensus 146 -------~~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~--~~V~~~A~~Iv~~m~~~~i~tGR~P 216 (540)
...+|.+..+.|++.|+++..+ ..|..||.+|+..|+++.+ .++...|+.+++.+..+++..|++|
T Consensus 120 ~~~~~~~~~~~i~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~P 194 (258)
T 2i53_A 120 FGQFGDDPKEEVMVLERILLQTIKFDLQV-----EHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEP 194 (258)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCceec-----cChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccCh
Confidence 2568999999999999998776 8899999999999975211 2789999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHH-------HHHHH--cccHHHHhhh
Q 009187 217 SGLCGAALYVSALTHGLKFSKSD-------IIEDF--MARKKELHEG 254 (540)
Q Consensus 217 ~~IAaAALylAa~~~g~~~t~~e-------I~~~~--~~~~~ti~~~ 254 (540)
+.||+||||+|++++|.++++.+ ++..| ++++.+|++.
T Consensus 195 s~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~ 241 (258)
T 2i53_A 195 EIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDI 241 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHH
Confidence 99999999999999999876532 44666 7888888776
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.82 E-value=4.5e-19 Score=176.92 Aligned_cols=180 Identities=14% Similarity=0.074 Sum_probs=154.6
Q ss_pred hHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Q 009187 66 SRERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (540)
Q Consensus 66 srer~L-~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~ 144 (540)
..|..+ ..+.+.|.+++..|+|| +.+..+|..||++++..+.+++++...+++||||+|||.+++|+++.||+.+..
T Consensus 25 ~~e~~~R~~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 25 DKELSCRQQAANLIQEMGQRLNVS--QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 344444 35779999999999999 999999999999999999999999999999999999999999999999987753
Q ss_pred c-----------C-------HHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhc
Q 009187 145 I-----------N-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206 (540)
Q Consensus 145 V-----------~-------~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~ 206 (540)
. . ..+|.+..+.|++.|+++..+ .+|..|+.+|+..++. +.++...|+.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~~--~~~~~~~A~~~~~~sl 175 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI-----EHPHTDVVKCTQLVRA--SKDLAQTSYFMATNSL 175 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEe-----eCcHHHHHHHHHHhCC--CcHHHHHHHHHHHhhh
Confidence 1 1 678999999999999998876 8999999999999974 6889999999998765
Q ss_pred -ccccccCCChhhHHHHHHHHHHHhcCCCCCHH----HHHHHH--cccHHHHhhh
Q 009187 207 -RDWITTGRKPSGLCGAALYVSALTHGLKFSKS----DIIEDF--MARKKELHEG 254 (540)
Q Consensus 207 -~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~----eI~~~~--~~~~~ti~~~ 254 (540)
...+..++.|+.||+||||+|++++|+++++. .+++.| ++++.+|++.
T Consensus 176 ~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~ 230 (257)
T 2ivx_A 176 HLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDEL 230 (257)
T ss_dssp HHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHH
T ss_pred hcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHH
Confidence 46677899999999999999999999988753 356655 4666666665
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.80 E-value=1.5e-18 Score=176.24 Aligned_cols=178 Identities=11% Similarity=0.074 Sum_probs=158.7
Q ss_pred hHHHHHH-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCC-CHHHHHHHh
Q 009187 66 SRERLME-KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF-LLIDFSNYL 143 (540)
Q Consensus 66 srer~L~-~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~pr-tL~DIs~vl 143 (540)
..++.+. .+.+.|.+++..|+|| +.+..+|..||++++..+.+++++...|++||||+|||.+++|+ ++.||..+.
T Consensus 37 ~~e~~~R~~~~~~I~~v~~~l~L~--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 37 EEYWKLQIFFTNVIQALGEHLKLR--QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 3444443 5679999999999999 99999999999999999999999999999999999999999988 788987754
Q ss_pred C----------------cCHHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcc
Q 009187 144 N----------------INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKR 207 (540)
Q Consensus 144 ~----------------V~~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~ 207 (540)
. ....+|.+..+.|++.|+++..+ ..|..||.+|+..|+. +.++.+.|+.+++.+..
T Consensus 115 ~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~fL~~~~~~l~~--~~~~~~~A~~~l~~sl~ 187 (285)
T 3rgf_B 115 TSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIV-----YHPYRPLLQYVQDMGQ--EDMLLPLAWRIVNDTYR 187 (285)
T ss_dssp HHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTT
T ss_pred HHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEe-----CChHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHc
Confidence 2 36689999999999999998766 7899999999999984 68899999999999999
Q ss_pred cccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 208 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 208 ~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
+.+.-++.|+.||+||||+|++++|.+. ..+..+|+++..+|++.
T Consensus 188 t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~ 232 (285)
T 3rgf_B 188 TDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEI 232 (285)
T ss_dssp SSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHH
T ss_pred cChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHH
Confidence 9999999999999999999999998765 57889999998777665
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.76 E-value=2.4e-17 Score=165.88 Aligned_cols=174 Identities=11% Similarity=0.064 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cCHH
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-prtL~DIs~vl~--V~~~ 148 (540)
....+.|.+++..++++ ..+...|..++.+++....+.+++...+++||||+|||.++. |.++.||+.+.+ .+..
T Consensus 39 ~~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLL--QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHH
Confidence 34678899999999999 999999999999999998899999999999999999999887 899999999875 7999
Q ss_pred HHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHH
Q 009187 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228 (540)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylAa 228 (540)
+|.+..+.|++.|+++..+ ..|..|+.||+..++. +.++...|+.+++....+....|++|+.||+||||+|.
T Consensus 117 eI~~mE~~IL~~L~f~l~~-----~tp~~fl~~~~~~~~~--~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~ 189 (269)
T 2b9r_A 117 QIRQMEMKILRALNFGLGR-----PLPLHFLRRASKIGEV--DVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLAL 189 (269)
T ss_dssp HHHHHHHHHHHHTTSCCCC-----CCHHHHHHHHHHSSCC--CHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH
Confidence 9999999999999998776 8899999999998874 68889999999999888888899999999999999999
Q ss_pred HhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 229 LTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 229 ~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
.++|.+....++...+++++.+|++.
T Consensus 190 ~~l~~~~w~~~l~~~tg~~~~~l~~~ 215 (269)
T 2b9r_A 190 KILDNGEWTPTLQHYLSYTEESLLPV 215 (269)
T ss_dssp HHHTCCCSCTTHHHHSCCCSSTTTTH
T ss_pred HHhCCCCCCHHHHHHHCCCHHHHHHH
Confidence 99999888888999999998777665
No 10
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.75 E-value=2.1e-17 Score=170.70 Aligned_cols=165 Identities=16% Similarity=0.125 Sum_probs=146.5
Q ss_pred chHHHHHH-HHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHH
Q 009187 65 ASRERLME-KAFDDMRQMKNALN--IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141 (540)
Q Consensus 65 ~srer~L~-~a~~~I~~ia~~L~--Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~ 141 (540)
...|+.+. .+...|.++|..|+ || +.++.+|..||++++..+.+++.++..|++||||+||+.+++|+++.||+.
T Consensus 50 ~eeE~~lr~~~~~~I~ev~~~l~~~Lp--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~ 127 (323)
T 1jkw_A 50 PHEEMTLCKYYEKRLLEFCSVFKPAMP--RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVG 127 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHH
Confidence 34456554 45699999999999 99 999999999999999999999999999999999999999999999999988
Q ss_pred HhCcC-------HHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhh-----CCCCCHHHHHHHHHHHHhhcccc
Q 009187 142 YLNIN-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-----LPGGNKKVCDTARDILASMKRDW 209 (540)
Q Consensus 142 vl~V~-------~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L-----~~~~~~~V~~~A~~Iv~~m~~~~ 209 (540)
++..+ ...|.+..+.|++.|+++..+ ..|..||.+|+..| ++..+..+...|+.+++.+..+.
T Consensus 128 ~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~ 202 (323)
T 1jkw_A 128 NLRESPLGQEKALEQILEYELLLIQQLNFHLIV-----HNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTD 202 (323)
T ss_dssp GSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTST
T ss_pred HhccChhhhHHHHHHHHHHHHHHHHHCCCcEEc-----CChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 77655 477999999999999998776 89999999999877 23334678899999999998888
Q ss_pred cccCCChhhHHHHHHHHHHHhcCCCCC
Q 009187 210 ITTGRKPSGLCGAALYVSALTHGLKFS 236 (540)
Q Consensus 210 i~tGR~P~~IAaAALylAa~~~g~~~t 236 (540)
+.-+..|+.||+||||+|++++|.+++
T Consensus 203 ~~l~~~Ps~IAaAai~lA~~~~~~~~~ 229 (323)
T 1jkw_A 203 AYLLYTPSQIALTAILSSASRAGITME 229 (323)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSCCCT
T ss_pred HHHcCCHHHHHHHHHHHHHHHcCCChH
Confidence 888999999999999999999998875
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.75 E-value=2.1e-18 Score=180.50 Aligned_cols=179 Identities=15% Similarity=0.081 Sum_probs=152.3
Q ss_pred HHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc
Q 009187 67 RERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (540)
Q Consensus 67 rer~L-~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V 145 (540)
.|..+ ..+.+.|.+++..|+|| +.++.+|..||++++..+.+++++...|++||||+|||.+++|+++.||+.++..
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~--~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVS--QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 34443 35789999999999999 9999999999999999999999999999999999999999999999999865421
Q ss_pred ------------------CHHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhc-
Q 009187 146 ------------------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK- 206 (540)
Q Consensus 146 ------------------~~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~- 206 (540)
...+|.+..+.|++.|+++..+ .+|..||.+|+..|+. +.++...|+.|++.+.
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v-----~~P~~fL~~~~~~l~~--~~~l~~~A~~ll~~sl~ 183 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTI-----DHPHTHVVKCTQLVRA--SKDLAQTSYFMATNSLH 183 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCC-----CCTTHHHHHHHHHTTC--CHHHHHHHHHHHHHHTT
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeC-----CCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHh
Confidence 1456888999999999998776 8999999999999974 6889999999998765
Q ss_pred ccccccCCChhhHHHHHHHHHHHhcCCCCCHH----HHHHHH--cccHHHHhhh
Q 009187 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKS----DIIEDF--MARKKELHEG 254 (540)
Q Consensus 207 ~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~----eI~~~~--~~~~~ti~~~ 254 (540)
...+..++.|+.||+||||+|++++|+++++. .+++.| ++++.+|++.
T Consensus 184 ~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i 237 (358)
T 2pk2_A 184 LTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDEL 237 (358)
T ss_dssp TSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHH
T ss_pred cCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHH
Confidence 45667899999999999999999999987753 355555 4566666665
No 12
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.72 E-value=1.4e-16 Score=159.40 Aligned_cols=175 Identities=15% Similarity=0.073 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cCHH
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-prtL~DIs~vl~--V~~~ 148 (540)
..+.+.|.+++..++++ ..+.-.|..++.+++....+..++...+++||||+|||.+++ |+++.||..+.+ .+..
T Consensus 40 ~~lvdwl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~ 117 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQ--NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 117 (260)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHH
Confidence 45678999999999999 999999999999999887777788899999999999999998 999999998874 8899
Q ss_pred HHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhccccc-ccCCChhhHHHHHHHHH
Q 009187 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI-TTGRKPSGLCGAALYVS 227 (540)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i-~tGR~P~~IAaAALylA 227 (540)
+|.+..+.|++.|+++..+ ..|..|+.+|+..++.+ +.++...|+.+++....+.. ..|++|+.||+||||+|
T Consensus 118 ~i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~l~~~-~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA 191 (260)
T 2cch_B 118 QVLRMEHLVLKVLTFDLAA-----PTVNQFLTQYFLHQQPA-NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 191 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHTTCSSC-CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999998776 88999999999999752 45888999999998654544 78999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 228 ALTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 228 a~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
+.++|.+..+.++...+++++.+|++.
T Consensus 192 ~~~~~~~~w~~~l~~~~g~~~~~i~~~ 218 (260)
T 2cch_B 192 LYTVTGQSWPESLIRKTGYTLESLKPC 218 (260)
T ss_dssp HHHHHSCCSCHHHHHHHCCCHHHHHHH
T ss_pred HHHhCCCcchHHHHHHhCcCHHHHHHH
Confidence 999998888999999999999998887
No 13
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=99.71 E-value=1.8e-18 Score=138.41 Aligned_cols=53 Identities=38% Similarity=0.590 Sum_probs=49.2
Q ss_pred CCcCCCCCCCCCCCChHHHhhcCCCHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 009187 381 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 433 (540)
Q Consensus 381 ~~~~~~~~~~lsdiDD~Eid~yil~eeE~~~K~~lW~~~N~eyl~eq~~Ke~~ 433 (540)
..+.++++++||||||+|||+|||||+|+++|++||+++|+|||++|++|+++
T Consensus 18 l~~~~dd~~~lsDiDD~Eid~yiLteeEv~~K~~iW~~~N~dyL~eq~~K~~k 70 (72)
T 1ngm_B 18 LSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLK 70 (72)
T ss_dssp HTTSCCCSSCCTTSCCSSGGGSSCCHHHHHHHHHHHHHHTTTHHHHHHHTTTT
T ss_pred HHhccCCccccccCCHHHHHHhhCCHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 44566888999999999999999999999999999999999999999999875
No 14
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.69 E-value=4.9e-16 Score=156.36 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cCHH
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-prtL~DIs~vl~--V~~~ 148 (540)
....+.|.+++..++++ ..+.-.|..++.+++....+..++...+++||||+|||.+++ |+++.||+.+.+ .+..
T Consensus 58 ~~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~ 135 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCE--EEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPE 135 (271)
T ss_dssp HHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHHCCc--hhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHH
Confidence 35678899999999999 899999999999999988888889999999999999999998 999999998864 7999
Q ss_pred HHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHH----HHHHHHHHHhhcccccccCCChhhHHHHHH
Q 009187 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV----CDTARDILASMKRDWITTGRKPSGLCGAAL 224 (540)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V----~~~A~~Iv~~m~~~~i~tGR~P~~IAaAAL 224 (540)
+|.+..+.|++.|++...+ ..|..|+.+|+..|+. +.++ .+.|..+++.+..+....|.+|+.||+|||
T Consensus 136 eI~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~l~~--~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai 208 (271)
T 2w96_A 136 ELLQMELLLVNKLKWNLAA-----MTPHDFIEHFLSKMPE--AEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSV 208 (271)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHH
Confidence 9999999999999998876 8999999999999974 3333 356888888766666677999999999999
Q ss_pred HHHHHhcCC---------CCCHHHHHHHHcccHHHHhhh
Q 009187 225 YVSALTHGL---------KFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 225 ylAa~~~g~---------~~t~~eI~~~~~~~~~ti~~~ 254 (540)
|+|+..+|. ..++.+++..+++++.+|++.
T Consensus 209 ~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c 247 (271)
T 2w96_A 209 VAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRAC 247 (271)
T ss_dssp HHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHH
Confidence 999988764 224678899999999999887
No 15
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.64 E-value=4.6e-15 Score=148.09 Aligned_cols=176 Identities=13% Similarity=0.040 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cCHH
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-prtL~DIs~vl~--V~~~ 148 (540)
....+.|.+++..++++ ..+.-.|..|+.+++..+.+++++...+++||||||||.+.. |.++.||+.+.+ .+..
T Consensus 52 ~~lvdwl~ev~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 129 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLE--PNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQ 129 (257)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHH
T ss_pred HHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHH
Confidence 35678999999999999 999999999999999998888889999999999999998765 999999998865 7899
Q ss_pred HHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcccccccCCChhhHHHHHHHH
Q 009187 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226 (540)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~--~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALyl 226 (540)
+|.+..+.|++.|++...+ ..|..|+.+|+..++.+.. ..+...|..+++....+....+.+|+.||+||||+
T Consensus 130 ~i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~l 204 (257)
T 1g3n_C 130 ELIDQEKELLEKLAWRTEA-----VLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCAL 204 (257)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHH
Confidence 9999999999999998876 8899999999999974221 23456788888877777778899999999999999
Q ss_pred HHHhcCCC------CCHHHHHHHHcccHHHHhhh
Q 009187 227 SALTHGLK------FSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 227 Aa~~~g~~------~t~~eI~~~~~~~~~ti~~~ 254 (540)
|...+|.+ .....+...+++++.+|++.
T Consensus 205 A~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c 238 (257)
T 1g3n_C 205 LVPANVIPQDTHSGGVVPQLASILGCDVSVLQAA 238 (257)
T ss_dssp HCCGGGSCC-----CHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHH
Confidence 99998863 44677888889999888876
No 16
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.62 E-value=2e-14 Score=143.29 Aligned_cols=176 Identities=11% Similarity=0.125 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcC-CCCCHHHHHHHhC--cCHH
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVY 148 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~-~prtL~DIs~vl~--V~~~ 148 (540)
....+.|.+++..++++ ..+.-.|..|+.+++..+.+++++...+++||||||||.+. .|.++.||+.+.+ .+..
T Consensus 53 ~~lvdwl~~v~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 130 (254)
T 2f2c_A 53 TILLTWMHLLCESFELD--KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNL 130 (254)
T ss_dssp HHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHH
T ss_pred HHHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHH
Confidence 35678899999999999 99999999999999999888999999999999999999966 5999999987754 7899
Q ss_pred HHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcccccccCCChhhHHHHHHHH
Q 009187 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226 (540)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~--~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALyl 226 (540)
+|.+..+.|++.|+++..+ ..|..|+.+|+..++.+.. ..+...|..+++....+....+.+|+.||+||||+
T Consensus 131 ~i~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~l 205 (254)
T 2f2c_A 131 ELINQEKDILEALKWDTEA-----VLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLT 205 (254)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHH
Confidence 9999999999999998876 8899999999999974211 22455788888877777778899999999999999
Q ss_pred HHHhcC-CCCC----HHHHHHHHcccHHHHhhh
Q 009187 227 SALTHG-LKFS----KSDIIEDFMARKKELHEG 254 (540)
Q Consensus 227 Aa~~~g-~~~t----~~eI~~~~~~~~~ti~~~ 254 (540)
|.+..+ .+.+ +..+...+++++.+|++.
T Consensus 206 a~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c 238 (254)
T 2f2c_A 206 TIETDNTNCRPWTCYLEDLSSILNFSTNTVRTV 238 (254)
T ss_dssp HHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHH
Confidence 999873 3455 788889999999988876
No 17
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.56 E-value=7.4e-14 Score=141.49 Aligned_cols=169 Identities=13% Similarity=0.067 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhC-cccCCCchhHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cCH
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR-NFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INV 147 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~-~~~rGR~~~~vaAACLYiACR~e~~-prtL~DIs~vl~--V~~ 147 (540)
....+.|.+++..++++ ..+.-.|..++.+++.. +.++++....+++||||+|||.++. |.++.||+.+.+ .+.
T Consensus 51 ~~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~ 128 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLH--RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 128 (283)
T ss_dssp HHHHHHHHHHHHHTTCB--HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCH
T ss_pred HHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCH
Confidence 35678899999999999 99999999999999987 5778899999999999999999877 999999998874 789
Q ss_pred HHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCC---------HHHHHHHHHHHHhhcccccccCCChhh
Q 009187 148 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN---------KKVCDTARDILASMKRDWITTGRKPSG 218 (540)
Q Consensus 148 ~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~---------~~V~~~A~~Iv~~m~~~~i~tGR~P~~ 218 (540)
.+|.+..+.|++.|++...+ +.|..|+.+|+..++.... ......+..+++....+.-..|.+|+.
T Consensus 129 ~ei~~mE~~IL~~L~~~l~~-----~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~ 203 (283)
T 1w98_B 129 DEILTMELMIMKALKWRLSP-----LTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGI 203 (283)
T ss_dssp HHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHH
T ss_pred HHHHHHHHHHHHHcCCcCCC-----CCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHH
Confidence 99999999999999998876 8999999999998863211 223334556776665555578999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHcccHHHHhhh
Q 009187 219 LCGAALYVSALTHGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 219 IAaAALylAa~~~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
||+||||+|+ .++.+...+|+++.+|++.
T Consensus 204 iAaAai~la~-------~~~~l~~~tg~~~~~i~~c 232 (283)
T 1w98_B 204 LAASALYHFS-------SSELMQKVSGYQWCDIENC 232 (283)
T ss_dssp HHHHHHHHTS-------CHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHH-------ChHHHHHHhCCCHHHHHHH
Confidence 9999999985 3778888999999988876
No 18
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.53 E-value=3.1e-13 Score=138.49 Aligned_cols=176 Identities=15% Similarity=0.082 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcC-CCCCHHHHHHHhC--cCHH
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVY 148 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~-~prtL~DIs~vl~--V~~~ 148 (540)
..+.+.|.+++..++|+ ..+.-.|..||.+++....++......++++||||||+.+. .|.++.+|..+.+ .+..
T Consensus 72 ~~lvdwl~ev~~~~~l~--~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCE--EEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHhCCc--HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHH
Confidence 45778999999999999 99999999999999998888888999999999999999854 5889999998875 7899
Q ss_pred HHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcccccccCCChhhHHHHHHHH
Q 009187 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226 (540)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~--~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALyl 226 (540)
+|.+..+.|++.|++...+ ..|..||.+|+..|+.... ..+...|+.+++....+....+.+|+.||+||||+
T Consensus 150 ~i~~mE~~IL~~L~f~l~~-----~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~l 224 (306)
T 3g33_B 150 QLRDWEVLVLGKLKWDLAA-----VIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGA 224 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 9999999999999998876 8899999999999964212 23556788888877777778899999999999999
Q ss_pred HHHhcCCCCCH-----HHHHHHHcccHHHHhhh
Q 009187 227 SALTHGLKFSK-----SDIIEDFMARKKELHEG 254 (540)
Q Consensus 227 Aa~~~g~~~t~-----~eI~~~~~~~~~ti~~~ 254 (540)
|...++..... ..+...+++++.+|+..
T Consensus 225 A~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c 257 (306)
T 3g33_B 225 AVQGLGACSMSGDELTELLAGITGTEVDCLRAC 257 (306)
T ss_dssp HHHTCC---CCHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHH
Confidence 99999865443 44567778888877766
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.37 E-value=2.3e-12 Score=123.47 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHH
Q 009187 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~ 153 (540)
...+|.++++.|+++ +.+.+.|..+++.+...+++.||++..++|||||+|||.+|.|++++||+.+.+|+..+|++.
T Consensus 108 p~~~i~r~~~~L~l~--~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~ 185 (200)
T 1ais_B 108 PTDYVNKFADELGLS--EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNR 185 (200)
T ss_dssp GGGGHHHHHHHHTCC--HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHH
Confidence 457899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccc
Q 009187 154 YLQLCQVLYIADES 167 (540)
Q Consensus 154 ~~~L~~~L~i~~~p 167 (540)
|+.|.+.|++..+|
T Consensus 186 ~~~l~~~l~~~~~~ 199 (200)
T 1ais_B 186 YKELVEKLKIKVPI 199 (200)
T ss_dssp HHHHHHHHTCCCCC
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999987654
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.23 E-value=4.8e-12 Score=98.30 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=41.9
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceeccccccccccccccCC
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA 46 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s~ 46 (540)
+.||+||+..+++|+.+|++||+.||+|+++++||.+|+|+.+++
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSN 56 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCCcccccCC
Confidence 379999998899999999999999999999999999999998763
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.13 E-value=2.2e-10 Score=110.31 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHH
Q 009187 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~ 153 (540)
....|.++++.|+++ +.+...|..+++.+...++..||++..+||||||+|||..|.|+++.+|+.+++|+..+|++.
T Consensus 102 p~~~l~r~~~~l~l~--~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~ 179 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLP--KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQS 179 (207)
T ss_dssp THHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHH
Confidence 467899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccc
Q 009187 154 YLQLCQVLYIADES 167 (540)
Q Consensus 154 ~~~L~~~L~i~~~p 167 (540)
|+.|.+.++...|.
T Consensus 180 ~~~l~~~l~~~~p~ 193 (207)
T 1c9b_A 180 YRLIYPRAPDLFPT 193 (207)
T ss_dssp HHHHGGGHHHHSCS
T ss_pred HHHHHHHHHHhChH
Confidence 99999999876543
No 22
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.04 E-value=1.4e-10 Score=87.20 Aligned_cols=44 Identities=18% Similarity=0.436 Sum_probs=41.1
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceeccccccccccccccC
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s 45 (540)
..||.||+..+++|+.+|++||..||.|++++.|+.+++|+.++
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 36999999789999999999999999999999999999999875
No 23
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=98.94 E-value=2e-10 Score=106.39 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=40.1
Q ss_pred CCCCCCC--CCeeeecCCCceecCcccceeccccccccccccccC
Q 009187 3 WCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (540)
Q Consensus 3 ~Cp~Cgs--~~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s 45 (540)
.||.||+ ..+++|+.+|++||++||.||+|++||.+|||+.++
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFs 67 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFS 67 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHH
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcC
Confidence 6999998 479999999999999999999999999999999765
No 24
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.90 E-value=3.9e-08 Score=97.94 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cCHHH
Q 009187 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 149 (540)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-prtL~DIs~vl~--V~~~~ 149 (540)
...+.|-+++..++++ ..+.-.|..++.+.+............++++|+|||++.+.+ |.++.+++...+ .+..+
T Consensus 51 ~lvdWl~ev~~~~~l~--~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQD--NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence 4568899999999999 899999999999999887777677888999999999997665 889999988764 78899
Q ss_pred HHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHH
Q 009187 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (540)
Q Consensus 150 Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~--~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylA 227 (540)
|.+.-+.|++.|+.+..+ ..|..|+.+|...++.... ..+...|..++....-+.-..+.+|+-||+||++++
T Consensus 129 i~~mE~~IL~~L~w~l~~-----pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~ 203 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWVADR-----CLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLT 203 (252)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHH
Confidence 999999999999998776 8899999999999864211 124456777766665555567899999999996554
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.76 E-value=8.8e-10 Score=114.65 Aligned_cols=89 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHH
Q 009187 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152 (540)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr 152 (540)
....+|.++|+.|+|+ ..+...|..|.+.+.+.+++.||++..|||||||+||+.++.++|++||+++++|+..+|..
T Consensus 234 ~p~~~i~Rf~s~L~l~--~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ 311 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKS 311 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHH
Confidence 3456899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 009187 153 VYLQLCQVLYI 163 (540)
Q Consensus 153 ~~~~L~~~L~i 163 (540)
.|+.|...++.
T Consensus 312 rykel~~~~~~ 322 (345)
T 4bbr_M 312 GYKILYEHRDK 322 (345)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.54 E-value=8.8e-09 Score=107.08 Aligned_cols=86 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHH
Q 009187 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 154 (540)
Q Consensus 75 ~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~ 154 (540)
..+|.++|+.|+|+ ..+...|..|.+.+...+++.||++..|||||||+||+.++.+++.++|+.+++|+..+|...|
T Consensus 236 ~~~i~Rf~~~L~l~--~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~y 313 (345)
T 3k7a_M 236 LTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 46688999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 009187 155 LQLCQVLY 162 (540)
Q Consensus 155 ~~L~~~L~ 162 (540)
+.|...+.
T Consensus 314 kel~~~~~ 321 (345)
T 3k7a_M 314 KILYEHRD 321 (345)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99988764
No 27
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.03 E-value=0.0062 Score=57.89 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCch---hHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHH
Q 009187 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT---EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~---~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~L 150 (540)
..+.|.++..+-++| +.|.+.|..+.+.++...--+|.++ ..|+|||+.||..+.+.|+++.|+--. .-+..+|
T Consensus 15 M~nclr~L~kKs~~~--eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~l-D~sL~Dv 91 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLP--EPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCL-DSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH-CTTCCCH
T ss_pred HHHHHHHHHhhccCc--HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHH-hhhhhHH
Confidence 456778888899999 9999999999999987766667654 569999999999999999999998644 2222233
Q ss_pred HHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcc
Q 009187 151 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKR 207 (540)
Q Consensus 151 gr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~ 207 (540)
.-.-..|++.|++.....-....=...+|..|+..|++-. ---...+.++...+..
T Consensus 92 elrr~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~-s~Y~p~C~rL~~ai~~ 147 (260)
T 3h4c_A 92 ELRRADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQV-SLYLPHCKRLLTALGR 147 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccch-hhhhhHHHHHHHHHHH
Confidence 3233466777766432100000002345666777776411 1123345555555443
No 28
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=96.80 E-value=0.0043 Score=60.35 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=58.6
Q ss_pred hhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccC-CChhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 009187 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG-RKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244 (540)
Q Consensus 176 ~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tG-R~P~~IAaAALylAa~~~g~~~t~~eI~~~~ 244 (540)
..+|.+++..|++ +..+..+|..+.+++-......| ++|..|++||||+||++.+.+++.++|+.++
T Consensus 32 ~~~i~~v~~~l~L--~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~ 99 (235)
T 1zp2_A 32 WKVVQTFGDRLRL--RQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEA 99 (235)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHH
Confidence 3578888999985 89999999999999766655666 9999999999999999999999999998765
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.78 E-value=0.0034 Score=62.04 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHhCcc-cCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHH
Q 009187 74 AFDDMRQMKNALNIGESD-EIVHVAKRFYGIAVARNF-TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~-~i~e~A~~iyk~a~~~~~-~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lg 151 (540)
....|.+++..++++ . .+...|..+...+..... +-+.++..+||||||+|++..+.|....+++.++|++..+|.
T Consensus 139 p~~fl~~~~~~l~~~--~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~ 216 (260)
T 2cch_B 139 VNQFLTQYFLHQQPA--NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLK 216 (260)
T ss_dssp HHHHHHHHHTTCSSC--CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHH
Confidence 467889999999988 5 788888888888664433 678999999999999999988878888899999999999999
Q ss_pred HHHHHHHHHhhc
Q 009187 152 AVYLQLCQVLYI 163 (540)
Q Consensus 152 r~~~~L~~~L~i 163 (540)
..++.|...+..
T Consensus 217 ~~~~~l~~~~~~ 228 (260)
T 2cch_B 217 PCLMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.69 E-value=0.0021 Score=64.07 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHH
Q 009187 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~ 153 (540)
....|.+++..++++ ..+...|..+...+.....+-+.++..+||||||+|++..+.+....++..++|++..+|...
T Consensus 138 p~~fl~~~~~~~~~~--~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~ 215 (269)
T 2b9r_A 138 PLHFLRRASKIGEVD--VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPV 215 (269)
T ss_dssp HHHHHHHHHHSSCCC--HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTH
T ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHH
Confidence 457788999999998 888889999998888777778999999999999999999888777788889999999999999
Q ss_pred HHHHHHHhh
Q 009187 154 YLQLCQVLY 162 (540)
Q Consensus 154 ~~~L~~~L~ 162 (540)
++.|.+.+.
T Consensus 216 ~~~l~~~~~ 224 (269)
T 2b9r_A 216 MQHLAKNVV 224 (269)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.47 E-value=0.01 Score=59.52 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHH
Q 009187 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 154 (540)
Q Consensus 75 ~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~ 154 (540)
++.|.+++..|+++ ..+...|..|...++....+-+..+..|||||||+|++..+.+. ......++++..+|..++
T Consensus 158 ~~fL~~~~~~l~~~--~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~ 233 (285)
T 3rgf_B 158 YRPLLQYVQDMGQE--DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHH
Confidence 56788999999998 89999999999998877777789999999999999999988754 466777899999999998
Q ss_pred HHHHHHhhc
Q 009187 155 LQLCQVLYI 163 (540)
Q Consensus 155 ~~L~~~L~i 163 (540)
..|......
T Consensus 234 ~~il~ly~~ 242 (285)
T 3rgf_B 234 RVILKLYEQ 242 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888876553
No 32
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.39 E-value=0.016 Score=56.86 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=60.0
Q ss_pred hhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 009187 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244 (540)
Q Consensus 176 ~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~ 244 (540)
..+|.+++..|++ +..+..+|..++++.-......+++|..|++||||+||++.+.+++.++|+.++
T Consensus 35 ~~~i~~v~~~l~l--~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~ 101 (257)
T 2ivx_A 35 ANLIQEMGQRLNV--SQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHH
Confidence 4578888999985 899999999999998877778899999999999999999999999999997665
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.39 E-value=0.0086 Score=59.51 Aligned_cols=91 Identities=14% Similarity=0.020 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCCCchHHH----HHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC---------CCCHHHHH
Q 009187 74 AFDDMRQMKNALNIGESDEIV----HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK---------PFLLIDFS 140 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~----e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~---------prtL~DIs 140 (540)
.+..|..+...++++ .... ..|..+...+.....+-+.++..+||||||+|++..+. +.+..+++
T Consensus 157 p~~fl~~~~~~l~~~--~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~ 234 (271)
T 2w96_A 157 PHDFIEHFLSKMPEA--EENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLS 234 (271)
T ss_dssp HHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHH
Confidence 467788999999998 5543 45667776665444456789999999999999986542 23567899
Q ss_pred HHhCcCHHHHHHHHHHHHHHhhcccc
Q 009187 141 NYLNINVYELGAVYLQLCQVLYIADE 166 (540)
Q Consensus 141 ~vl~V~~~~Lgr~~~~L~~~L~i~~~ 166 (540)
.++|++..+|...++.|...+.....
T Consensus 235 ~~~~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 235 RVIKCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886543
No 34
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.30 E-value=0.025 Score=47.74 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=62.2
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccC------CCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHH
Q 009187 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK------GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (540)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~r------GR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lg 151 (540)
|+++|-+||++ .+++.|.+++.+.... +.. --+....+||++|.+||.++....-.-+....++....+.
T Consensus 6 v~dLcVqfgc~---e~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFSCI---EAVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHTCG---GGHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 78999999998 5888888887776532 221 1223578999999999999999999899999999998887
Q ss_pred HHHHHHHHH
Q 009187 152 AVYLQLCQV 160 (540)
Q Consensus 152 r~~~~L~~~ 160 (540)
+...++-+.
T Consensus 82 ~l~~~~e~~ 90 (95)
T 3m03_A 82 RLCKQLEKI 90 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 35
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.22 E-value=0.023 Score=55.68 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=59.3
Q ss_pred hhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 009187 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244 (540)
Q Consensus 176 ~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~ 244 (540)
..+|.+++..|++ +..+.-+|..++++.-......++++.-|++||||+||++.+.+++.++|+.+.
T Consensus 45 ~~~i~~v~~~l~l--~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~ 111 (258)
T 2i53_A 45 ARFIFDVGTRLGL--HYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHH
Confidence 3578888999985 899999999999998777778899999999999999999999999999998653
No 36
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.03 E-value=0.025 Score=55.54 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCCCchH----HHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhc-CCCCC----HHHHHHHhCc
Q 009187 75 FDDMRQMKNALNIGESDE----IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFL----LIDFSNYLNI 145 (540)
Q Consensus 75 ~~~I~~ia~~L~Lp~~~~----i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e-~~prt----L~DIs~vl~V 145 (540)
+..|..+...++++ .. +...|..+...+.....+-+.++..+||||||+|.+.. +.|.+ ..+++.++|+
T Consensus 153 ~~fl~~~~~~~~~~--~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~ 230 (254)
T 2f2c_A 153 TDFLIPLCNALKIP--EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNF 230 (254)
T ss_dssp GGSHHHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCC--hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCc
Confidence 45688899999998 43 34567777776665555678899999999999999986 44565 7889999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 009187 146 NVYELGAVYLQLCQVLY 162 (540)
Q Consensus 146 ~~~~Lgr~~~~L~~~L~ 162 (540)
+..+|...++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 231 STNTVRTVKDQVSEAFS 247 (254)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 37
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=95.96 E-value=0.029 Score=57.32 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=58.5
Q ss_pred hHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 009187 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244 (540)
Q Consensus 177 ~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~ 244 (540)
.+|.+++..|+...++.|..+|..+++++-......+++|..|++|||||||++.++.++.++++..+
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~ 129 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHh
Confidence 45777788887113899999999999998887888899999999999999999999999999987544
No 38
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=95.80 E-value=0.025 Score=55.65 Aligned_cols=89 Identities=17% Similarity=0.045 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC------CCCHHHHHHHhCc
Q 009187 74 AFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK------PFLLIDFSNYLNI 145 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~--~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~------prtL~DIs~vl~V 145 (540)
.+..|..++..++++.. ..+...|..+...+.....+-+.++..+||||||+|++..+. +.....++.++++
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~ 230 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGC 230 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCc
Confidence 46788899999998731 123456777777766555567889999999999999998875 3567888999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 009187 146 NVYELGAVYLQLCQVLY 162 (540)
Q Consensus 146 ~~~~Lgr~~~~L~~~L~ 162 (540)
+..+|...++.|...+.
T Consensus 231 ~~~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 231 DVSVLQAAVEQILTSVS 247 (257)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 39
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=95.74 E-value=0.032 Score=57.92 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=59.5
Q ss_pred hhHHHHHHHhhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 009187 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDF 244 (540)
Q Consensus 176 ~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~ 244 (540)
..+|.+++..|.+ +..+..+|..|++++-......+++|.-|++|||||||++.+..++.++|+.++
T Consensus 42 v~wI~ev~~~l~L--~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~ 108 (358)
T 2pk2_A 42 ANLLQDMGQRLNV--SQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHTTTTC--CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 4578888888875 899999999999998877778899999999999999999999999999997554
No 40
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=95.55 E-value=0.03 Score=58.98 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhC--cccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc
Q 009187 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (540)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V 145 (540)
.-|..+|+.+|..|+++. ..+.+....+|+-.+.+ .++++|...+++-+|+|+.||..+..++++||-..+..
T Consensus 280 ~LAa~Rl~~LC~~L~~~~-~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~ 354 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 354 (411)
T ss_dssp HHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHh
Confidence 447789999999999872 36777777777776654 68899999999999999999999999999999887643
No 41
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=95.37 E-value=0.0063 Score=47.67 Aligned_cols=47 Identities=15% Similarity=0.449 Sum_probs=38.0
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceeccccccccccccccCCCCccccCccceee
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s~G~s~v~G~~v~~~ 59 (540)
++||.|+...++++.++-.+.|..||+||-+. .+|.+++.|..+..+
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P-----------TGGKA~l~~~i~e~l 54 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP-----------TGGKGNIKAEIIEYV 54 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEEC-----------CSSSCEECSEEEECC
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEeec-----------CCcceeeehhHHhhh
Confidence 47999999999999999999999999999743 346666667666544
No 42
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=95.28 E-value=0.044 Score=56.58 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh--CcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Q 009187 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA--RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (540)
Q Consensus 71 L~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~--~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~ 144 (540)
+.-|..+|..+|..|+++. ..+.+....+|.-++. ..++++|...+++-+|+|+.||..+...++++|-....
T Consensus 215 y~La~~Rl~~LC~~L~~~~-~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 215 YRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3457788999999999872 3577778888887775 45789999999999999999999999999999988764
No 43
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.09 E-value=0.0083 Score=46.65 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=35.7
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceeccccccccccccccCCCCccccCccce
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR 57 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s~G~s~v~G~~v~ 57 (540)
++||.|+...+++++++-.+.|..||+||-+. .+|..++.|..+.
T Consensus 16 VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~P-----------TGGKa~l~~~i~~ 60 (63)
T 3j20_W 16 VKCIDCGNEQIVFSHPATKVRCLICGATLVEP-----------TGGKGIVKAKILE 60 (63)
T ss_dssp EECSSSCCEEEEESSCSSCEECSSSCCEEEEC-----------CSSSCEECSSCEE
T ss_pred EECCCCCCeeEEEecCCeEEEccCcCCEEecC-----------CCCcEEEEEEEEE
Confidence 47999999999999999999999999999753 3355555555543
No 44
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=94.83 E-value=0.063 Score=59.68 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhC--cccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Q 009187 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (540)
Q Consensus 71 L~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~ 144 (540)
+.-|..+|..+|..|+++. ..+.+....+|+..+.. .++++|...+++-+|+|..||..+...++++|.....
T Consensus 524 y~LAa~Rl~~LC~~L~~~~-~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr 598 (656)
T 4elj_A 524 YRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 3457789999999998772 46778888888887754 6789999999999999999999999999999988764
No 45
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=94.83 E-value=0.01 Score=48.38 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=29.2
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceeccc
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~ 33 (540)
+.||.|+...+++++++-.+.|..||+||-+.
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~P 64 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAILCKP 64 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCEEEEE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCEEeec
Confidence 47999999999999999999999999999753
No 46
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=94.58 E-value=0.012 Score=47.91 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=29.3
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceeccc
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~ 33 (540)
++||.|+...+++++++-.+.|..||+||-+.
T Consensus 35 VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 35 VKCPGCLNITTVFSHAQTAVTCESCSTILCTP 66 (82)
T ss_dssp EECTTSCSCEEEESBCSSCCCCSSSCCCCEEC
T ss_pred EECCCCCCeeEEEecCCeEEEccccCCEEecc
Confidence 47999999999999999999999999999753
No 47
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.19 E-value=0.15 Score=51.62 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCCCc--hHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCC----HHHHHHHhCcCH
Q 009187 75 FDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFL----LIDFSNYLNINV 147 (540)
Q Consensus 75 ~~~I~~ia~~L~Lp~~--~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-prt----L~DIs~vl~V~~ 147 (540)
+..|..+...++++.. ..+...|..+.........+-+.++..+||||||+|++..+. |.. ...+..+++++.
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~ 251 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 251 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCH
Confidence 4568888888888732 124566777777766665666788999999999999997764 322 366788899999
Q ss_pred HHHHHHHHHHHHHhhc
Q 009187 148 YELGAVYLQLCQVLYI 163 (540)
Q Consensus 148 ~~Lgr~~~~L~~~L~i 163 (540)
..|...+..|...+.-
T Consensus 252 ~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 252 DCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888764
No 48
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.17 E-value=0.014 Score=48.04 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=29.3
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceeccc
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~ 33 (540)
++||.|+...+++.+++-.+.|..||+||-+.
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 47999999999999999999999999999753
No 49
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=94.14 E-value=0.027 Score=44.94 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCCCCCCCCCeeeecCCCceecCccccee
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vl 30 (540)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGR-LEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCB-EEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCc-CEEeCCCCEEEcCCCCcee
Confidence 479999995 6777788999999999985
No 50
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=94.03 E-value=0.031 Score=44.47 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCCCCCCCCCeeeecCCCceecCccccee
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vl 30 (540)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGP-LKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCC-CEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCc-CeEeCCCCEEEcCCCCcEe
Confidence 479999986 5677778999999999985
No 51
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=93.88 E-value=0.032 Score=44.15 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=24.3
Q ss_pred CCCCCCCCCCeeeecCCCceecCccccee
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vl 30 (540)
..||.|++. +.++...|.++|..||.+.
T Consensus 11 L~CP~ck~~-L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGP-LRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEE
T ss_pred hCCCCCCCc-CeEeCCCCEEEcCCCCccc
Confidence 369999995 6788889999999999875
No 52
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=93.84 E-value=0.031 Score=44.31 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=24.4
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceec
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vle 31 (540)
..||.|++. +.++...|.++|..||.+..
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 9 LVCPVTKGR-LEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CBCSSSCCB-CEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 479999986 66777789999999999853
No 53
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=93.84 E-value=0.026 Score=46.50 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceeccccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~I 35 (540)
.||.||.. .++++..|.+.|..||.+..-..+
T Consensus 29 ~Cp~CG~~-~v~r~atGiW~C~~Cg~~~aggay 60 (83)
T 1vq8_Z 29 ACPNCGED-RVDRQGTGIWQCSYCDYKFTGGSY 60 (83)
T ss_dssp ECSSSCCE-EEEEEETTEEEETTTCCEEECCSS
T ss_pred cCCCCCCc-ceeccCCCeEECCCCCCEecCCEe
Confidence 59999985 789999999999999998775533
No 54
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=93.60 E-value=0.035 Score=43.99 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=24.3
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceec
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vle 31 (540)
..||.|++. +.++...|.++|..||.+..
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 9 LVCPLCKGP-LVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 469999986 66777789999999999853
No 55
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=93.55 E-value=0.23 Score=50.34 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhC-c---ccCCCchhHHHHHHHHHHHH-hcCCCCCHHHHHHHhCcCHHHHH
Q 009187 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVAR-N---FTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELG 151 (540)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~-~---~~rGR~~~~vaAACLYiACR-~e~~prtL~DIs~vl~V~~~~Lg 151 (540)
+...+|..|+|+ +.+.+.|..+|+.+... + .+-|. ....-.||||+||. .++...+|-.|-...++++.++-
T Consensus 5 rF~~lC~~Lnld--~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff 81 (304)
T 2qdj_A 5 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFF 81 (304)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHH
Confidence 467889999999 99999999999998774 2 33444 44555566999997 47778999999999999987773
No 56
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.86 E-value=0.064 Score=39.90 Aligned_cols=27 Identities=22% Similarity=0.617 Sum_probs=21.7
Q ss_pred CCCCCCCCCeeeecCCCceecCccccee
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vl 30 (540)
.||.||+..+..++ .+..+|..||.+.
T Consensus 21 ~CP~CG~~~fm~~~-~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPGVFMADH-GDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSSCEEEEC-SSEEECSSSCCEE
T ss_pred cCCCCCCceEEecC-CCeEECCCCCCEE
Confidence 59999998665544 5899999999874
No 57
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=91.75 E-value=0.59 Score=46.58 Aligned_cols=82 Identities=7% Similarity=-0.013 Sum_probs=62.9
Q ss_pred hHHHHHHHhhCCCCCHHHHHHHHHHHHhhccc-ccccCCChhhHHHHHHHHHHHhcCC-CCCHHHHHHHH---------c
Q 009187 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRD-WITTGRKPSGLCGAALYVSALTHGL-KFSKSDIIEDF---------M 245 (540)
Q Consensus 177 ~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~-~i~tGR~P~~IAaAALylAa~~~g~-~~t~~eI~~~~---------~ 245 (540)
++|...+..+++ ..++.-.|..+++++... ....++++..|++||||+||++.+. ..+.++++..+ .
T Consensus 55 ~wl~~v~~~~~l--~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~ 132 (283)
T 1w98_B 55 DWLMEVCEVYKL--HRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEIL 132 (283)
T ss_dssp HHHHHHHHHTTC--BHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHHHHhCC--CccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHH
Confidence 456667777764 789999999999998765 4568899999999999999999987 67889986543 3
Q ss_pred ccHHHHhhhhcCCCC
Q 009187 246 ARKKELHEGVAANLP 260 (540)
Q Consensus 246 ~~~~ti~~~~~~~~~ 260 (540)
..|..|.+.+.++..
T Consensus 133 ~mE~~IL~~L~~~l~ 147 (283)
T 1w98_B 133 TMELMIMKALKWRLS 147 (283)
T ss_dssp HHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHcCCcCC
Confidence 345566666666664
No 58
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=91.18 E-value=0.11 Score=39.44 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCeeeecCCCceecCcccce
Q 009187 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKV 29 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VCt~CG~V 29 (540)
|..||.||+..+.. ...+.+.|..||..
T Consensus 18 ~~fCPkCG~~~~ma-~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA-EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCE-ECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEe-ccCCEEECCCCCCE
Confidence 45799999975433 34579999999997
No 59
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=88.75 E-value=6.4 Score=39.53 Aligned_cols=105 Identities=6% Similarity=-0.004 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhC--ccc-CCCchhHHHHHHHHHHHH-hcCCCCCHHHHHHHhCcCHHH
Q 009187 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFT-KGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYE 149 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~-rGR~~~~vaAACLYiACR-~e~~prtL~DIs~vl~V~~~~ 149 (540)
..++|.++...-+++ ..+.-.|..|+.++... ++. .......+..+||-+|.+ ..+...+-+.+|.+.|+++.+
T Consensus 77 I~~Yl~RI~k~t~ls--~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLE--HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 346788888888898 88888888777777663 332 334567788899999998 577888999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCChhhHHHHHHHhh
Q 009187 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186 (540)
Q Consensus 150 Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L 186 (540)
|...-+.++..|+++.. ++++.|...+...+
T Consensus 155 LN~LE~eFL~lLdf~L~------V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 155 LNILENDFLKRVNYRII------PRDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHTTTTCCS------CCTTHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCcee------eCHHHHHHHHHHHh
Confidence 99999999999998764 67888876665554
No 60
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=87.14 E-value=1.5 Score=36.89 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=50.5
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhhcccc------cccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHHcccHHHHh
Q 009187 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDW------ITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKKELH 252 (540)
Q Consensus 179 I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~~------i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~~~~~~ti~ 252 (540)
|.-+|-.|+ -.+++..|.+|++..+..- -....+|. .++||+|.||+.+.+++++..+.+..++++....
T Consensus 6 v~dLcVqfg---c~e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFS---CIEAVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHT---CGGGHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhC---CHHHHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 344566666 3457777777777765321 01234554 5679999999999999999999999999877544
Q ss_pred hh
Q 009187 253 EG 254 (540)
Q Consensus 253 ~~ 254 (540)
+-
T Consensus 82 ~l 83 (95)
T 3m03_A 82 RL 83 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 61
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=86.76 E-value=2.8 Score=46.66 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhCc----c-cCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHH
Q 009187 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARN----F-TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (540)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~----~-~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lg 151 (540)
+...+|..|+++ +.+.+.|...|+...... . ..| ...++.|+.+|.||+.+|...+|-.|-...+++..++
T Consensus 7 ~f~~lC~~Ln~d--~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F- 82 (656)
T 4elj_A 7 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF- 82 (656)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH-
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH-
Confidence 467899999999 999999999999988422 1 233 4567777778888888999999999999999998777
Q ss_pred HHHHHHHH
Q 009187 152 AVYLQLCQ 159 (540)
Q Consensus 152 r~~~~L~~ 159 (540)
|.+|.+
T Consensus 83 --F~kikk 88 (656)
T 4elj_A 83 --FNLLKE 88 (656)
T ss_dssp --HHHHHH
T ss_pred --HHHhHh
Confidence 445544
No 62
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=86.47 E-value=0.35 Score=36.55 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=21.9
Q ss_pred CCCCCCCCCCeeeec------C---CCceecCcccceecc
Q 009187 2 VWCSSCARHVTGHRP------Y---DSQLCCDRCGKVLED 32 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~------~---~G~~VCt~CG~Vlee 32 (540)
..||.||.....+.. + +-.++|..||..-.+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 479999997654431 2 236899999987554
No 63
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.67 E-value=0.64 Score=40.21 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCeeeec---CCCceecCcccceec
Q 009187 1 MVWCSSCARHVTGHRP---YDSQLCCDRCGKVLE 31 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D~---~~G~~VCt~CG~Vle 31 (540)
|..||.||+-...... ....++|..||.+..
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 6689999987433321 123799999999764
No 64
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=82.04 E-value=0.57 Score=41.08 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCe-eee--cCCCceecCcccceec
Q 009187 1 MVWCSSCARHVT-GHR--PYDSQLCCDRCGKVLE 31 (540)
Q Consensus 1 m~~Cp~Cgs~~i-v~D--~~~G~~VCt~CG~Vle 31 (540)
|..||.||.-.. ..| ...+.++|..||....
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 458999998532 333 3356899999999765
No 65
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=81.77 E-value=0.82 Score=34.65 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=20.6
Q ss_pred CCCCCCCCCeeeecCCCceecC--ccccee
Q 009187 3 WCSSCARHVTGHRPYDSQLCCD--RCGKVL 30 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt--~CG~Vl 30 (540)
.||.|++. +.++. |.++|. .||...
T Consensus 12 ~CP~c~~~-L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 12 ACPACHAP-LEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCSSSCSC-EEEET--TEEEECSSSCCCEE
T ss_pred eCCCCCCc-ceecC--CEEEcCCcCCCcEE
Confidence 69999996 45553 999999 999875
No 66
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=81.60 E-value=0.59 Score=32.22 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=20.7
Q ss_pred CCCCCCCCCC--eeeecCCCceecCccccee
Q 009187 2 VWCSSCARHV--TGHRPYDSQLCCDRCGKVL 30 (540)
Q Consensus 2 ~~Cp~Cgs~~--iv~D~~~G~~VCt~CG~Vl 30 (540)
+.||.||+.+ ++.+...-.+-|..||..-
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 5799999984 3444344567799999863
No 67
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=80.20 E-value=0.96 Score=40.01 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=21.2
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceec
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vle 31 (540)
.||.|++.-.-.| ...+||..||.--.
T Consensus 29 ~CP~C~seytYeD--g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 29 PCPQCNSEYTYED--GALLVCPECAHEWS 55 (138)
T ss_dssp CCTTTCCCCCEEC--SSSEEETTTTEEEC
T ss_pred CCCCCCCcceEec--CCeEECCccccccC
Confidence 6999999854333 56899999999763
No 68
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=79.87 E-value=0.81 Score=38.64 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=11.6
Q ss_pred CCceecCccccee
Q 009187 18 DSQLCCDRCGKVL 30 (540)
Q Consensus 18 ~G~~VCt~CG~Vl 30 (540)
.|.+||..||...
T Consensus 51 ~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEALITRDRKQVF 63 (97)
T ss_dssp SEEEECTTSCEEE
T ss_pred CCeEEcCCCCCCc
Confidence 7899999999975
No 69
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.33 E-value=1.1 Score=36.83 Aligned_cols=32 Identities=22% Similarity=0.618 Sum_probs=26.0
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceeccccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~I 35 (540)
.||.||...+ .....|-.-|..||.++.-...
T Consensus 37 ~CpfCGk~~v-kR~a~GIW~C~kCg~~~AGGAy 68 (83)
T 3j21_i 37 TCPVCGRKAV-KRISTGIWQCQKCGATFAGGAY 68 (83)
T ss_dssp CCSSSCSSCE-EEEETTEEEETTTCCEEECCSS
T ss_pred CCCCCCCcee-EecCcCeEEcCCCCCEEeCCcc
Confidence 5999999854 4567899999999999876544
No 70
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=77.99 E-value=1.1 Score=39.92 Aligned_cols=30 Identities=17% Similarity=0.425 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCeee-ec--CCCceecCccccee
Q 009187 1 MVWCSSCARHVTGH-RP--YDSQLCCDRCGKVL 30 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~-D~--~~G~~VCt~CG~Vl 30 (540)
|.+||.||+-.... |. ....++|..||.+.
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 56899999864332 22 12369999999975
No 71
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=77.53 E-value=1.2 Score=35.54 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.6
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceeccccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~I 35 (540)
.||.||...+ .....|-.-|..||.++.-...
T Consensus 28 ~C~fCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 59 (72)
T 3jyw_9 28 DCSFCGKKTV-KRGAAGIWTCSCCKKTVAGGAY 59 (72)
T ss_dssp CCSSCCSSCB-SBCSSSCBCCSSSCCCCCCSSS
T ss_pred cCCCCCCcee-EecCCCeEECCCCCCEEeCCcc
Confidence 5999998754 5567899999999999875543
No 72
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=77.48 E-value=1.2 Score=37.14 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=24.7
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceeccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~ 33 (540)
.||.||...+ .....|-.-|..||.++.-.
T Consensus 38 ~CpfCgk~~v-kR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 38 FCEFCGKFAV-KRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp CCTTTCSSCB-EEEETTEEECSSSCCEEECC
T ss_pred cCcccCCCee-EecCcceEEcCCCCCEEeCC
Confidence 5999999854 45668999999999998744
No 73
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=76.96 E-value=1.2 Score=43.43 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.1
Q ss_pred CCCCCCCC-CeeeecCCCceecCcccce
Q 009187 3 WCSSCARH-VTGHRPYDSQLCCDRCGKV 29 (540)
Q Consensus 3 ~Cp~Cgs~-~iv~D~~~G~~VCt~CG~V 29 (540)
.||.||++ .+.++ ..|...|-.||.-
T Consensus 16 ~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 16 PCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp CCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred cCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 69999985 44444 3588999999975
No 74
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=76.42 E-value=1.3 Score=36.93 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=24.6
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceeccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~ 33 (540)
.||.||...+ .....|-.-|..||.++.-.
T Consensus 38 ~CpfCgk~~v-kR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 38 DCSFCGKKTV-KRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp CCSSSCSSCC-EEEETTEEECTTTCCEEECC
T ss_pred cCCCCCCcee-eecccceEEcCCCCCEEeCC
Confidence 5999998854 45568999999999998754
No 75
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=76.01 E-value=0.76 Score=36.48 Aligned_cols=27 Identities=22% Similarity=0.685 Sum_probs=18.0
Q ss_pred CCCCCCCCCeeeecCCCceecCcccc-eec
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGK-VLE 31 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~-Vle 31 (540)
.|+.||...-+. ....+.|..||. ||-
T Consensus 30 ~C~~CG~~~e~~--~~d~irCp~CG~RILy 57 (70)
T 1twf_L 30 ICAECSSKLSLS--RTDAVRCKDCGHRILL 57 (70)
T ss_dssp ECSSSCCEECCC--TTSTTCCSSSCCCCCB
T ss_pred ECCCCCCcceeC--CCCCccCCCCCceEeE
Confidence 599999862222 345567999998 653
No 76
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=75.88 E-value=1 Score=39.07 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceecccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHN 34 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~ 34 (540)
.||.||... +.....|-..|..||.++.-..
T Consensus 62 tCPfCGk~~-vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 62 ACPNCGEDR-VDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp ECSSSCCEE-EEEEETTEEEETTTCCEEECCS
T ss_pred cCCCCCCce-eEecCceeEECCCCCCEEECCC
Confidence 599999854 4555689999999999987553
No 77
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=75.50 E-value=1.2 Score=35.58 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.2
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceeccccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~I 35 (540)
.||.||...+ .....|-..|..||.++.-...
T Consensus 29 ~C~fCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 60 (73)
T 1ffk_W 29 KCPVCGFPKL-KRASTSIWVCGHCGYKIAGGAY 60 (73)
T ss_pred cCCCCCCcee-EEEEeEEEECCCCCcEEECCCc
Confidence 5999998744 4456899999999999875543
No 78
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=75.47 E-value=0.79 Score=35.30 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCeeeecCCCceecCcccceeccccccccccccccC
Q 009187 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s 45 (540)
|..|+.||...+ .-+|..||.+.. +.+-+-|+-++
T Consensus 6 mr~C~~CgvYTL-------k~~CP~CG~~T~---~~hParfSp~D 40 (60)
T 2apo_B 6 MKKCPKCGLYTL-------KEICPKCGEKTV---IPKPPKFSLED 40 (60)
T ss_dssp CEECTTTCCEES-------SSBCSSSCSBCB---CCCCCCCCTTC
T ss_pred ceeCCCCCCEec-------cccCcCCCCcCC---CCCCCCCCCCc
Confidence 447999997643 567999998754 33455676543
No 79
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=72.92 E-value=1.5 Score=37.23 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=24.5
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceeccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~ 33 (540)
.||.||... +.....|-.-|..||.++.-.
T Consensus 38 ~CpfCgk~~-vKR~a~GIW~C~kCg~~~AGG 67 (103)
T 4a17_Y 38 GCPFCGKVA-VKRAAVGIWKCKPCKKIIAGG 67 (103)
T ss_dssp ECTTTCCEE-EEEEETTEEEETTTTEEEECC
T ss_pred CCCCCCCce-eeecCcceEEcCCCCCEEeCC
Confidence 599999874 455678999999999998744
No 80
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=72.50 E-value=1.6 Score=29.90 Aligned_cols=24 Identities=29% Similarity=0.655 Sum_probs=12.9
Q ss_pred CCCCCCCCCeeeecCCCceecCcccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~ 28 (540)
.|+.||.-..+.....|.++| ||.
T Consensus 8 ~C~~CGnivev~~~g~~~l~C--CG~ 31 (36)
T 1dxg_A 8 KCELCGQVVKVLEEGGGTLVC--CGE 31 (36)
T ss_dssp ECTTTCCEEEEEECCSSCEEE--TTE
T ss_pred EcCCCCcEEEEEeCCCcCEEe--CCc
Confidence 477776543333344566666 554
No 81
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=72.46 E-value=1.3 Score=35.29 Aligned_cols=27 Identities=26% Similarity=0.657 Sum_probs=21.2
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceec
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vle 31 (540)
+.|| ||...+ .+...-..-|. ||.++.
T Consensus 5 v~C~-C~~~~~-~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRALY-SREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCCEE-EETTCSEEEET-TTEEEE
T ss_pred EECC-CCCEEE-EcCCCcEEECC-CCCeee
Confidence 4699 998744 55566788999 999986
No 82
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=70.04 E-value=5.1 Score=32.36 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHHhhcccc
Q 009187 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166 (540)
Q Consensus 121 ACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~~~ 166 (540)
--|+-+.+..|.|....||+..+||+.++|.+++..|.+.-.|..|
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 3466788899999999999999999999999999999998776543
No 83
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=68.47 E-value=2.1 Score=31.56 Aligned_cols=28 Identities=21% Similarity=0.666 Sum_probs=19.4
Q ss_pred CCCCCCCCCCeeee---------cCCCceecCcccce
Q 009187 2 VWCSSCARHVTGHR---------PYDSQLCCDRCGKV 29 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D---------~~~G~~VCt~CG~V 29 (540)
..||.||....++- +.+=.++|.+||..
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 47999999855432 12336899999964
No 84
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=67.80 E-value=15 Score=33.55 Aligned_cols=100 Identities=10% Similarity=0.096 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhC--cCHHHHHHHHHHHHHHhh-----ccccc---cc--cccCChhhHHHHHHH
Q 009187 117 QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYELGAVYLQLCQVLY-----IADES---NV--LKQVDPSIFLHKFTD 184 (540)
Q Consensus 117 ~vaAACLYiACR~e~~prtL~DIs~vl~--V~~~~Lgr~~~~L~~~L~-----i~~~p---~~--~~~~dP~~~I~Rf~~ 184 (540)
.++=|.||++ +-|.++.+++.+++ ++...+......|...+. +.... .| ....+-..||.+|..
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~~ 85 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLLA 85 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHHS
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 4566888876 77999999999999 999999888888887664 21111 11 111223445555532
Q ss_pred hhCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHHccc
Q 009187 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMAR 247 (540)
Q Consensus 185 ~L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~~~~ 247 (540)
.= .+....+.|++ -||...++-++|..+|.+..|+.
T Consensus 86 ~~---~~~~LS~aaLE------------------------tLaiIay~qPiTR~eI~~irGv~ 121 (162)
T 1t6s_A 86 PV---IQRRLSRSMLE------------------------VLAVVAWHQPVTKGEIQQIRGAS 121 (162)
T ss_dssp CH---HHHHHHHHHHH------------------------HHHHHHHHCSEEHHHHHHHHTCC
T ss_pred cc---ccCccCHHHHH------------------------HHHHHHHcCCcCHHHHHHHHCCC
Confidence 10 01223333333 34444567899999999999987
No 85
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=66.90 E-value=7.8 Score=35.22 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=39.8
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 113 R~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
++...-+-+.+|+|.+..+.|.+..+||..++++...|.+.+.+|.+.
T Consensus 24 ~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 24 TKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344556678889998766779999999999999999999888888764
No 86
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=66.32 E-value=21 Score=29.33 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-CHHHHHHHHHH
Q 009187 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQ 156 (540)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V-~~~~Lgr~~~~ 156 (540)
|..+|..+|++ . .+-.++|+......+..-.....+-.|+-++. ....++.+||..+|. +...+.+.|++
T Consensus 24 ~~~lA~~~~~S--~---~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~ 94 (108)
T 3oou_A 24 LKTLGNDFHIN--A---VYLGQLFQKEMGEHFTDYLNRYRVNYAKEELL----QTKDNLTIIAGKSGYTDMAYFYRQFKK 94 (108)
T ss_dssp HHHHHHHHTSC--H---HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHCcC--H---HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHcCCCChHHHHHHHHH
Confidence 67788999998 3 23344566554443322222222333443432 345789999999996 78888888876
Q ss_pred H
Q 009187 157 L 157 (540)
Q Consensus 157 L 157 (540)
.
T Consensus 95 ~ 95 (108)
T 3oou_A 95 H 95 (108)
T ss_dssp H
T ss_pred H
Confidence 5
No 87
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=65.56 E-value=34 Score=33.20 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhCCCCchH----HHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCC----HHHHHHHhCc
Q 009187 74 AFDDMRQMKNALNIGESDE----IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL----LIDFSNYLNI 145 (540)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~----i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prt----L~DIs~vl~V 145 (540)
.+..+..+...++++ .. +...|..+...+.-.-.+-..++..+||||+..+. .+.+.. ...++..+++
T Consensus 149 p~~FL~~~l~~~~~~--~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l--~~~~~~~~~~~~~L~~~t~~ 224 (252)
T 1f5q_B 149 STDLICYILHIMHAP--REDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM--NQKYDYYENRIDGVCKSLYI 224 (252)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCC--cchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh--ccCCCchhhHHHHHHHHHCc
Confidence 466788888888887 43 44456665555543333345678889999965444 444333 3456778899
Q ss_pred CHHHHHHHHHHHHHHhh
Q 009187 146 NVYELGAVYLQLCQVLY 162 (540)
Q Consensus 146 ~~~~Lgr~~~~L~~~L~ 162 (540)
+...|...+..|.+.|.
T Consensus 225 ~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 225 TKEELHQCCDLVDIAIV 241 (252)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988774
No 88
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=65.39 E-value=16 Score=30.69 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhCcccCCCchhHHHH--HHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHHhhc
Q 009187 92 EIVHVAKRFYGIAVARNFTKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (540)
Q Consensus 92 ~i~e~A~~iyk~a~~~~~~rGR~~~~vaA--ACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i 163 (540)
.|++....+|..-.+.=..++|....+.| .+.|++-.. +..+|.+|+..+|-+..++..+++++.+.+.-
T Consensus 9 ~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 9 TIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHHTTCCHHHHHSSCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHhCCCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 44444444443333332335555544444 577776554 57889999999999999999999999988764
No 89
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.30 E-value=2.1 Score=31.82 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=18.7
Q ss_pred CCCCCCCCCeeeecCCCceecCcccce
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~V 29 (540)
.||.||+. ...|-..|..||.+
T Consensus 16 iCpkC~a~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 16 VCLRCGAT-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp ECTTTCCE-----ECTTCSSCSSSSSC
T ss_pred cCCCCCCc-----CCCCceecCCCCCc
Confidence 69999986 34799999999987
No 90
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=63.76 E-value=2.8 Score=36.21 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=12.6
Q ss_pred CCCHHHHHHHhCcCHHHHHH
Q 009187 133 PFLLIDFSNYLNINVYELGA 152 (540)
Q Consensus 133 prtL~DIs~vl~V~~~~Lgr 152 (540)
..|..++|..++++...|.+
T Consensus 84 glsq~~la~~~g~s~~~i~~ 103 (133)
T 3o9x_A 84 SLTQKEASEIFGGGVNAFSR 103 (133)
T ss_dssp TCCHHHHHHHHCSCTTHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
Confidence 35666677777776666544
No 91
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=63.38 E-value=2.4 Score=30.87 Aligned_cols=24 Identities=29% Similarity=0.826 Sum_probs=15.4
Q ss_pred CCCCCCCCCeeeecCCCc----------eecCcccce
Q 009187 3 WCSSCARHVTGHRPYDSQ----------LCCDRCGKV 29 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~----------~VCt~CG~V 29 (540)
.|+.||- ++|++.|+ .+|..||.=
T Consensus 6 ~C~vCGy---vyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCGY---EYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EETTTCC---EECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCe---EEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 4778873 56665553 378888753
No 92
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=61.98 E-value=2.2 Score=32.79 Aligned_cols=35 Identities=20% Similarity=0.508 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCeeeecCCCceecCcccceeccccccccccccccC
Q 009187 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~~Ids~~ef~~~s 45 (540)
|..|+.||...+ .-+|..||.... ..+-+-|+-++
T Consensus 5 mr~C~~Cg~YTL-------k~~CP~CG~~t~---~ahParfSP~D 39 (60)
T 2aus_D 5 IRKCPKCGRYTL-------KETCPVCGEKTK---VAHPPRFSPED 39 (60)
T ss_dssp CEECTTTCCEES-------SSBCTTTCSBCE---ESSCCCCCSCC
T ss_pred ceECCCCCCEEc-------cccCcCCCCccC---CCCCCCCCCCC
Confidence 568999997533 457999998743 23444566443
No 93
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=60.34 E-value=22 Score=29.12 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHH
Q 009187 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (540)
Q Consensus 118 vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L 157 (540)
+..++-||--...+.+.++.++|+.++++...|.+.|+..
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455666665555578999999999999999998776643
No 94
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=59.90 E-value=27 Score=28.30 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHH
Q 009187 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (540)
Q Consensus 118 vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L 157 (540)
+..+.-||--...+-+.++.++|+.++++...|.+.|+..
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344556665555558999999999999999998776644
No 95
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=58.97 E-value=3.4 Score=30.02 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=19.6
Q ss_pred CCCCCCCC-Ceeeec-CCCceecCccccee
Q 009187 3 WCSSCARH-VTGHRP-YDSQLCCDRCGKVL 30 (540)
Q Consensus 3 ~Cp~Cgs~-~iv~D~-~~G~~VCt~CG~Vl 30 (540)
.|.+|+.. ...|.. ..|..+|..||.-.
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 58999986 334542 36788999999753
No 96
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=58.71 E-value=9.7 Score=33.71 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 116 ~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
..-+-+.+|+|-...+.|.+..+||..++++...|.+.+..|.+.
T Consensus 11 ~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 11 RYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344557788887655679999999999999999999988888774
No 97
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=58.61 E-value=24 Score=28.98 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHH
Q 009187 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (540)
Q Consensus 117 ~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L 157 (540)
.+..+.-||--.... +.++.++|..++++...|.+.|+..
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345566677666554 8999999999999999998777644
No 98
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=58.53 E-value=4.1 Score=32.43 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=8.0
Q ss_pred CCCCCCCCCCe
Q 009187 2 VWCSSCARHVT 12 (540)
Q Consensus 2 ~~Cp~Cgs~~i 12 (540)
|.||.||+..+
T Consensus 3 m~Cp~Cg~~~l 13 (78)
T 3ga8_A 3 MKCPVCHQGEM 13 (78)
T ss_dssp CBCTTTSSSBE
T ss_pred eECCCCCCCee
Confidence 57999987533
No 99
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=57.79 E-value=15 Score=31.33 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 117 ~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
..+.+.+|++-+..+.|.+..+||..++++...+.+.+..|.+.
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34445566665555778999999999999999999988888763
No 100
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=57.55 E-value=4.2 Score=30.56 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=4.0
Q ss_pred ecCcccc
Q 009187 22 CCDRCGK 28 (540)
Q Consensus 22 VCt~CG~ 28 (540)
+|..||.
T Consensus 38 ~CP~Cg~ 44 (54)
T 4rxn_A 38 VCPLCGV 44 (54)
T ss_dssp BCTTTCC
T ss_pred cCcCCCC
Confidence 5555554
No 101
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=57.00 E-value=7 Score=31.72 Aligned_cols=27 Identities=19% Similarity=0.616 Sum_probs=19.0
Q ss_pred CCCCCCCCCeeeecCCCceecCccccee
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vl 30 (540)
+||.|+... +.++....+.|..||...
T Consensus 27 wCP~C~~~~-~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSFGF-IYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCCCE-ECCCSCSCEECTTTCCEE
T ss_pred ECcCCCchh-eecCCCCceEeCCCCCcc
Confidence 699888763 344445668898898764
No 102
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=56.68 E-value=22 Score=33.92 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhhcccccccC---CChhhHHHHHHHHHHHhcCCCCCHHHH
Q 009187 190 GNKKVCDTARDILASMKRDWITTG---RKPSGLCGAALYVSALTHGLKFSKSDI 240 (540)
Q Consensus 190 ~~~~V~~~A~~Iv~~m~~~~i~tG---R~P~~IAaAALylAa~~~g~~~t~~eI 240 (540)
.+..|..+|..|++.+---.---| -+|.-+|||++.+|+.-.+.+++..|+
T Consensus 28 ~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~ 81 (260)
T 3h4c_A 28 LPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEV 81 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHH
Confidence 478999999999987532111112 579999999999999999999999887
No 103
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=55.78 E-value=4.9 Score=33.03 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCCCCCCC---Ceeeec--CCCceecCcccceecc
Q 009187 3 WCSSCARH---VTGHRP--YDSQLCCDRCGKVLED 32 (540)
Q Consensus 3 ~Cp~Cgs~---~iv~D~--~~G~~VCt~CG~Vlee 32 (540)
.||.|+.. .+..|- ..|.+.|..||.-.+-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 59999987 234443 3689999999987654
No 104
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=55.71 E-value=5.9 Score=36.71 Aligned_cols=25 Identities=16% Similarity=0.522 Sum_probs=21.1
Q ss_pred CCCCCCCCCeeeecCCCceecCcccce
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~V 29 (540)
.||.|++.. .+...|...|..||..
T Consensus 44 ACp~CnKKV--~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKSV--LKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCCE--EEETTTEEEETTTTEE
T ss_pred hchhhCCEe--eeCCCCeEECCCCCCC
Confidence 499999873 3556899999999998
No 105
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=55.47 E-value=13 Score=32.98 Aligned_cols=45 Identities=13% Similarity=-0.081 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 115 ~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
...-+-+.+|+|-+ .+.|.+..+||..++++...|.+.+..|.+.
T Consensus 13 ~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 13 FSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34456677788864 4568999999999999999999998888773
No 106
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=55.08 E-value=6.6 Score=38.74 Aligned_cols=32 Identities=13% Similarity=0.419 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCeeeecCCCceecCcccceeccc
Q 009187 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~ 33 (540)
+..||.||+..... ...-..+|..||.+.=.+
T Consensus 107 ~~fC~~CG~~~~~~-~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 107 HKYCGYCGHEMYPS-KTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp TSBCTTTCCBEEEC-SSSSCEEESSSSCEECCC
T ss_pred CCccccCCCcCccC-CCceeeeCCCCCCEecCC
Confidence 35799999875433 334578999999986544
No 107
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=54.37 E-value=34 Score=28.65 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhH-HHHHHHHHHHHh-cCCCCCHHHHHHHhCc-CHHHHHHHH
Q 009187 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ-VQASCLYLACRQ-KSKPFLLIDFSNYLNI-NVYELGAVY 154 (540)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~-vaAACLYiACR~-e~~prtL~DIs~vl~V-~~~~Lgr~~ 154 (540)
|..+|..++++ ... -.++|+. . |.++.. +--.-+-.|+++ .....++.+||..+|. +...+.+.|
T Consensus 26 ~~~lA~~~~~S--~~~---l~r~fk~------~-G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~F 93 (120)
T 3mkl_A 26 LARIASELLMS--PSL---LKKKLRE------E-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVF 93 (120)
T ss_dssp HHHHHHHTTCC--HHH---HHHHHHH------T-TCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHCcC--HHH---HHHHHHH------c-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHH
Confidence 78899999999 432 2233433 2 544433 233334444443 3457899999999995 688888888
Q ss_pred HHHHHHhhccccccccccCChhhHHHHHHHhhC
Q 009187 155 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187 (540)
Q Consensus 155 ~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~ 187 (540)
++. .| +.|..|-.++...+.
T Consensus 94 k~~---~G----------~tP~~yr~~~~~~~~ 113 (120)
T 3mkl_A 94 RNY---YG----------MTPTEYQERSAQRLS 113 (120)
T ss_dssp HHH---HS----------SCHHHHHHHC-----
T ss_pred HHH---HC----------cCHHHHHHHHHhccC
Confidence 765 33 458888887776663
No 108
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=54.36 E-value=29 Score=28.39 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHH
Q 009187 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (540)
Q Consensus 118 vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L 157 (540)
+..++-||.-.. ..+.++.++|..++++...|.+.|++.
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 444555665554 447999999999999999998777643
No 109
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=53.33 E-value=19 Score=34.63 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHHhh-----ccccc---cc--cccCChhhHHHHHHHh
Q 009187 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY-----IADES---NV--LKQVDPSIFLHKFTDR 185 (540)
Q Consensus 116 ~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~-----i~~~p---~~--~~~~dP~~~I~Rf~~~ 185 (540)
..++=|.||++ +-|.++.+++.+++++...+......|...+. +.... .| +...+-..||.+|...
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~~ 92 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLLD 92 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcc
Confidence 35667888876 78999999999999999999998888888763 22111 11 1222335566666532
Q ss_pred hCCCCCHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHHcccHH
Q 009187 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIIEDFMARKK 249 (540)
Q Consensus 186 L~~~~~~~V~~~A~~Iv~~m~~~~i~tGR~P~~IAaAALylAa~~~g~~~t~~eI~~~~~~~~~ 249 (540)
=. .....+.|++ -||...++-++|..+|.+..|+...
T Consensus 93 ~~---~~~Ls~aaLE------------------------tLaiIAy~QPITR~eI~~irGv~~~ 129 (219)
T 2z99_A 93 GA---RTKLTRAALE------------------------TLAVVAYRQPVTRARVSAVRGVNVD 129 (219)
T ss_dssp HH---SCCCCHHHHH------------------------HHHHHHHHCSEEHHHHHHHHTSCCH
T ss_pred cc---cCccCHHHHH------------------------HHHHHHHcCCcCHHHHHHHHCCCHH
Confidence 10 0001111211 2333445679999999999998754
No 110
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=52.42 E-value=4.2 Score=29.07 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=19.6
Q ss_pred CCCCCCCC-Ceeeec-CCCceecCcccce
Q 009187 3 WCSSCARH-VTGHRP-YDSQLCCDRCGKV 29 (540)
Q Consensus 3 ~Cp~Cgs~-~iv~D~-~~G~~VCt~CG~V 29 (540)
.|.+|+.+ ...+.. ..|..+|..||.-
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 58999986 334542 3688999999975
No 111
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=52.29 E-value=8.3 Score=35.21 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCeeeecC---CCceecCcccce
Q 009187 1 MVWCSSCARHVTGHRPY---DSQLCCDRCGKV 29 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~---~G~~VCt~CG~V 29 (540)
+..||.||....+..+. .-..+|..||.+
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCc
Confidence 35799999985444331 225699999943
No 112
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=51.82 E-value=6.2 Score=38.39 Aligned_cols=30 Identities=17% Similarity=0.607 Sum_probs=20.3
Q ss_pred CCCCCCCCCCee-e--ecCCCceecCcccceec
Q 009187 2 VWCSSCARHVTG-H--RPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 2 ~~Cp~Cgs~~iv-~--D~~~G~~VCt~CG~Vle 31 (540)
+.||+||+..+. + ..--.+..|..|+--.|
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyE 67 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEFE 67 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCEEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchhhe
Confidence 479999996442 2 22357899999986443
No 113
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=51.69 E-value=1.1e+02 Score=31.31 Aligned_cols=131 Identities=12% Similarity=0.125 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHhc----------CCCCCHHHHHHHhCcCHHHHHHHHHHHHHH-----------hh-----------c
Q 009187 116 EQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQV-----------LY-----------I 163 (540)
Q Consensus 116 ~~vaAACLYiACR~e----------~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~-----------L~-----------i 163 (540)
..+.|+|+=++..-+ ...+++--|.++++++.+++.++.-.+++. |+ .
T Consensus 105 ~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~~LprelvkHL~~iEe~iLeslaW 184 (347)
T 2r7g_A 105 MSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAW 184 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 567888887765533 235667778899999999998887665554 11 0
Q ss_pred ccc-cccccc--CCh--------hhH-----------HHHHHHhhCCCCCHHHHHHHHHHHHhhc--ccccccCCChhhH
Q 009187 164 ADE-SNVLKQ--VDP--------SIF-----------LHKFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSGL 219 (540)
Q Consensus 164 ~~~-p~~~~~--~dP--------~~~-----------I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~--~~~i~tGR~P~~I 219 (540)
... |.+..+ ..+ ..| |..+|+.|.+ ..+++...+|.+.+.+- ...+.-+|+---|
T Consensus 185 ~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~-~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQi 263 (347)
T 2r7g_A 185 LSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 263 (347)
T ss_dssp STTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHH
T ss_pred ccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhChHhhcCCcHHHH
Confidence 000 000000 001 112 4455777753 23456666776666543 4678999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHccc
Q 009187 220 CGAALYVSALTHGLKFSKSDIIEDFMAR 247 (540)
Q Consensus 220 AaAALylAa~~~g~~~t~~eI~~~~~~~ 247 (540)
.-.|||..|+.++..+|-++|.......
T Consensus 264 ilCaiY~i~Kv~~~~~tF~~Ii~~Yr~q 291 (347)
T 2r7g_A 264 MMCSMYGICKVKNIDLKFKIIVTAYKDL 291 (347)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhc
Confidence 9999999999999999999998876443
No 114
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=51.67 E-value=34 Score=27.90 Aligned_cols=70 Identities=7% Similarity=-0.019 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHh-cCCC--CCHHHHHHHhCc-CHHHHHHH
Q 009187 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ-KSKP--FLLIDFSNYLNI-NVYELGAV 153 (540)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~-e~~p--rtL~DIs~vl~V-~~~~Lgr~ 153 (540)
|..+|..+|++ .. +-.++|+......+.. .+.-.=+-.|+++ ...+ .++.+||..+|. +...+.+.
T Consensus 21 ~~~lA~~~~~s--~~---~l~r~fk~~~G~s~~~-----~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~ 90 (108)
T 3mn2_A 21 IEKLTALTGIS--SR---GIFKAFQRSRGYSPMA-----FAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARD 90 (108)
T ss_dssp HHHHHHHHTCC--HH---HHHHHHHHHTSSCHHH-----HHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHCCC--HH---HHHHHHHHHhCcCHHH-----HHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHH
Confidence 67788888888 32 3334455543332221 1222223334433 2233 699999999995 67788888
Q ss_pred HHHH
Q 009187 154 YLQL 157 (540)
Q Consensus 154 ~~~L 157 (540)
|++.
T Consensus 91 Fk~~ 94 (108)
T 3mn2_A 91 YRDM 94 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7755
No 115
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=51.40 E-value=6.3 Score=36.46 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=20.2
Q ss_pred CCCCCCCCCC--eeeecCC--CceecCcccce
Q 009187 2 VWCSSCARHV--TGHRPYD--SQLCCDRCGKV 29 (540)
Q Consensus 2 ~~Cp~Cgs~~--iv~D~~~--G~~VCt~CG~V 29 (540)
|.|+.|++.+ ++.|... =.+.|..||..
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 4799999974 4443233 37889999987
No 116
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=51.36 E-value=39 Score=27.57 Aligned_cols=71 Identities=6% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-CHHHHHHHHHH
Q 009187 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQ 156 (540)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V-~~~~Lgr~~~~ 156 (540)
|..+|..+|++ .. +-.++|+......+..-.....+..|+-++. ....++.+||..+|. +...+.+.|++
T Consensus 23 ~~~lA~~~~~S--~~---~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~ 93 (107)
T 2k9s_A 23 IASVAQHVCLS--PS---RLSHLFRQQLGISVLSWREDQRISQAKLLLS----TTRMPIATVGRNVGFDDQLYFSRVFKK 93 (107)
T ss_dssp HHHHHHHTTSC--HH---HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCC--HH---HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 66788899998 33 3344566554443322222222333443333 246889999999994 67888888776
Q ss_pred H
Q 009187 157 L 157 (540)
Q Consensus 157 L 157 (540)
.
T Consensus 94 ~ 94 (107)
T 2k9s_A 94 C 94 (107)
T ss_dssp H
T ss_pred H
Confidence 5
No 117
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=51.17 E-value=12 Score=32.41 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=21.7
Q ss_pred CCCCCCCCCCeeee---------cCCCceecCcccceeccc
Q 009187 2 VWCSSCARHVTGHR---------PYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D---------~~~G~~VCt~CG~Vlee~ 33 (540)
..||.||....++= +.+-.++|+.||..-.++
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 36999999855442 123358999999875444
No 118
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=48.98 E-value=5.1 Score=31.78 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=14.0
Q ss_pred CCCCCCCC-Ceeeec---CCCceecCccccee
Q 009187 3 WCSSCARH-VTGHRP---YDSQLCCDRCGKVL 30 (540)
Q Consensus 3 ~Cp~Cgs~-~iv~D~---~~G~~VCt~CG~Vl 30 (540)
.|.+||.+ ...|.. ..| ++|..||+-.
T Consensus 10 ~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~ 40 (71)
T 2kae_A 10 QCSNCSVTETIRWRNIRSKEG-IQCNACFIYQ 40 (71)
T ss_dssp CCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCC-ccchHHHHHH
Confidence 46666654 234442 234 6666666543
No 119
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=48.71 E-value=4.2 Score=31.82 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=18.9
Q ss_pred CCCCCCCCC-eeee-cCCCceecCcccceec
Q 009187 3 WCSSCARHV-TGHR-PYDSQLCCDRCGKVLE 31 (540)
Q Consensus 3 ~Cp~Cgs~~-iv~D-~~~G~~VCt~CG~Vle 31 (540)
.|.+||... ..|. ...|..+|-.||....
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 588888763 3333 2367788888887654
No 120
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=47.79 E-value=44 Score=27.52 Aligned_cols=71 Identities=6% Similarity=0.025 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-CHHHHHHHHHH
Q 009187 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQ 156 (540)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V-~~~~Lgr~~~~ 156 (540)
|.++|..++++ .. +-.++|+......+..-.....+-.|+-++. ....++.|||..+|. +...+.+.|++
T Consensus 26 ~~~lA~~~~~S--~~---~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~----~~~~~i~eIA~~~Gf~~~s~F~r~Fk~ 96 (113)
T 3oio_A 26 TDDIAYYVGVS--RR---QLERLFKQYLGTVPSKYYLELRLNRARQLLQ----QTSKSIVQIGLACGFSSGPHFSSTYRN 96 (113)
T ss_dssp HHHHHHHHTSC--HH---HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCcC--HH---HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 67788889998 33 3334455544333322212222333443332 346799999999995 77788887776
Q ss_pred H
Q 009187 157 L 157 (540)
Q Consensus 157 L 157 (540)
.
T Consensus 97 ~ 97 (113)
T 3oio_A 97 H 97 (113)
T ss_dssp H
T ss_pred H
Confidence 5
No 121
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=47.58 E-value=70 Score=25.69 Aligned_cols=72 Identities=7% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-CHHHHHHHHH
Q 009187 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYL 155 (540)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V-~~~~Lgr~~~ 155 (540)
.|..+|..++++ . .+-.++|+......+..-.....+--|+-++. ....++.+||..+|. +...+.+.|+
T Consensus 21 ~~~~lA~~~~~S--~---~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~----~~~~si~~iA~~~Gf~~~s~F~r~Fk 91 (103)
T 3lsg_A 21 TLSVLSEKLDLS--S---GYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLL----TTELKNYEIAEQVGFEDVNYFITKFK 91 (103)
T ss_dssp CHHHHHHHTTCC--H---HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred CHHHHHHHHCcC--H---HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 377889999998 3 33444566655443322222222333443332 246789999999995 7788888877
Q ss_pred HH
Q 009187 156 QL 157 (540)
Q Consensus 156 ~L 157 (540)
+.
T Consensus 92 ~~ 93 (103)
T 3lsg_A 92 KY 93 (103)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 122
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=47.56 E-value=36 Score=27.99 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCcccCCCchhHHHH--HHHHHHHHhcCCCCCHHHHHHHh-CcCHHHHHHHHHHHHHHhhc
Q 009187 92 EIVHVAKRFYGIAVARNFTKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYL-NINVYELGAVYLQLCQVLYI 163 (540)
Q Consensus 92 ~i~e~A~~iyk~a~~~~~~rGR~~~~vaA--ACLYiACR~e~~prtL~DIs~vl-~V~~~~Lgr~~~~L~~~L~i 163 (540)
.|++....+|..-.+.=..++|+...+.| .+.|++-.. +..+|.+|+..+ |.+..++..+++++.+.+.-
T Consensus 5 ~I~~~Va~~f~i~~~dl~s~~R~~~i~~aRqiamyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 5 NIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhCCCCCchhHHHHHHHHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 34444444443322222234555444444 567776554 568899999999 79999999999999987753
No 123
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=47.07 E-value=60 Score=30.14 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 58899999999999999999999999886
No 124
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=46.84 E-value=4.8 Score=31.19 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=19.0
Q ss_pred CCCCCCCC-Ceeeec-CCCceecCcccceec
Q 009187 3 WCSSCARH-VTGHRP-YDSQLCCDRCGKVLE 31 (540)
Q Consensus 3 ~Cp~Cgs~-~iv~D~-~~G~~VCt~CG~Vle 31 (540)
.|.+||.+ ...|.. ..|..+|..||.-..
T Consensus 9 ~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 9 SCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred cCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 58888876 334442 357788888887654
No 125
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=46.42 E-value=7 Score=31.81 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.0
Q ss_pred CceecCcccceeccc
Q 009187 19 SQLCCDRCGKVLEDH 33 (540)
Q Consensus 19 G~~VCt~CG~Vlee~ 33 (540)
..++|+.||.|.++.
T Consensus 26 ~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEA 40 (81)
T ss_dssp CEEEETTTCCEEETT
T ss_pred ceEEeCCCCEEEcCC
Confidence 468999999998764
No 126
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.04 E-value=9.3 Score=38.64 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=19.0
Q ss_pred CCCCCCCCCC---eeee--cCCC--ceecCccccee
Q 009187 2 VWCSSCARHV---TGHR--PYDS--QLCCDRCGKVL 30 (540)
Q Consensus 2 ~~Cp~Cgs~~---iv~D--~~~G--~~VCt~CG~Vl 30 (540)
..||.||+.- ++.. ...| .+.|+-||+-=
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W 218 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE
Confidence 3799999972 2221 1356 68999998864
No 127
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=45.96 E-value=7.3 Score=29.82 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=16.9
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceec
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vle 31 (540)
+.||+||... .--.||..||.-=+
T Consensus 31 ~~c~~cG~~~------~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 31 TECPQCHGKK------LSHHICPNCGYYDG 54 (60)
T ss_dssp EECTTTCCEE------CTTBCCTTTCBSSS
T ss_pred eECCCCCCEe------CCceEcCCCCcCCC
Confidence 4689998752 35678999997543
No 128
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=45.79 E-value=28 Score=26.54 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=27.9
Q ss_pred HhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 128 R~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
+.++.|.++.|||..++++..++.+....|.+.
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346678999999999999999999887777664
No 129
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=45.20 E-value=47 Score=30.88 Aligned_cols=30 Identities=3% Similarity=-0.072 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 131 ~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
..|.|..+||+.+|++..+|.|..++|.+.
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 358899999999999999999999999875
No 130
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=43.77 E-value=44 Score=27.50 Aligned_cols=40 Identities=13% Similarity=0.293 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHH
Q 009187 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (540)
Q Consensus 117 ~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L 157 (540)
.+..+.-||--. ...+.++.++|..++++...|.+.|++.
T Consensus 8 ~i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344455555433 3456999999999999999998776643
No 131
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=43.23 E-value=10 Score=30.24 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHcccHHHHhhh
Q 009187 232 GLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 232 g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
|++.|++||++.|+++..|++.-
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHH
Confidence 78999999999999999998877
No 132
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=43.14 E-value=13 Score=37.48 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=17.8
Q ss_pred CCCCCCCCC-CeeeecCC-----------CceecCcccceec
Q 009187 2 VWCSSCARH-VTGHRPYD-----------SQLCCDRCGKVLE 31 (540)
Q Consensus 2 ~~Cp~Cgs~-~iv~D~~~-----------G~~VCt~CG~Vle 31 (540)
+.||+||.+ .+.+=... --.+|..||.-+-
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 368888875 33221111 2568888887763
No 133
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=43.03 E-value=47 Score=29.61 Aligned_cols=29 Identities=7% Similarity=-0.087 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.++.++|.+.
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999876
No 134
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=42.92 E-value=31 Score=27.43 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 131 ~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
|.|.|+.||++.++++..++.+-...|.+.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 789999999999999999988777776664
No 135
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=42.81 E-value=7.2 Score=29.86 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=16.5
Q ss_pred CCCCCCCCCCeeeecCCCceecCcccceec
Q 009187 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vle 31 (540)
+.||+||... .--.||..||+-=+
T Consensus 31 ~~c~~cGe~~------~~H~vc~~CG~Y~g 54 (60)
T 3v2d_5 31 VPCPECKAMK------PPHTVCPECGYYAG 54 (60)
T ss_dssp EECTTTCCEE------CTTSCCTTTCEETT
T ss_pred eECCCCCCee------cceEEcCCCCcCCC
Confidence 4699999742 34568999996533
No 136
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=42.52 E-value=69 Score=32.14 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=49.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhhcc-cccc--cCCChhhHHHHHHHHHHHh-cCCCCCHHHHHHHHcccHHHHhhh
Q 009187 180 HKFTDRLLPGGNKKVCDTARDILASMKR-DWIT--TGRKPSGLCGAALYVSALT-HGLKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 180 ~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~-~~i~--tGR~P~~IAaAALylAa~~-~g~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
..+|..|.+ +..+...||++.+.+.. +.+. +--...-..+||||+|+.- .|.-+|..+|.+.+++.-.+.-++
T Consensus 7 ~~lC~~Lnl--d~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~k 83 (304)
T 2qdj_A 7 TALCQKLKI--PDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFNL 83 (304)
T ss_dssp HHHHHHTTC--CHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHHH
Confidence 456888874 78999999999999887 3331 1123555566669999953 455688888888888876544333
No 137
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=42.22 E-value=51 Score=27.33 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=36.4
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHh-CcCHHHHHHHHHHHHHHhhc
Q 009187 122 CLYLACRQKSK-PFLLIDFSNYL-NINVYELGAVYLQLCQVLYI 163 (540)
Q Consensus 122 CLYiACR~e~~-prtL~DIs~vl-~V~~~~Lgr~~~~L~~~L~i 163 (540)
-|..+|++.|- |.++.-||..| +-++..+...|..|.+.+.-
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 46778998876 89999999999 49999999999999998763
No 138
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=41.70 E-value=10 Score=33.30 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=19.1
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceec
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vle 31 (540)
.|+.||.-..+.....|.++| ||.-++
T Consensus 9 kC~~CGnivev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 9 KCEVCGNIVEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp ECTTTCCEEEEEECCSSCEEE--TTEECE
T ss_pred EcCCCCeEEEEEcCCCcceec--CCcccc
Confidence 599998754444556778888 887655
No 139
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=41.47 E-value=10 Score=28.08 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=6.9
Q ss_pred eecCcccceecc
Q 009187 21 LCCDRCGKVLED 32 (540)
Q Consensus 21 ~VCt~CG~Vlee 32 (540)
.+|+.||.|.++
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 456666666554
No 140
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=41.38 E-value=10 Score=28.48 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=5.8
Q ss_pred eecCcccceecc
Q 009187 21 LCCDRCGKVLED 32 (540)
Q Consensus 21 ~VCt~CG~Vlee 32 (540)
.+|+.||.|.++
T Consensus 4 y~C~~CGyvYd~ 15 (55)
T 2v3b_B 4 WQCVVCGFIYDE 15 (55)
T ss_dssp EEETTTCCEEET
T ss_pred EEeCCCCeEECC
Confidence 345555555443
No 141
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=40.99 E-value=33 Score=30.10 Aligned_cols=44 Identities=9% Similarity=-0.044 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 114 ~~~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
+...-+-+.+|+|-+ .+ + +..+||..++++...|.+.+.+|.+.
T Consensus 7 ~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 7 RLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445566678888855 34 4 99999999999999999988888774
No 142
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=40.91 E-value=27 Score=29.84 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHHhhccccccccccCChhhHHHH
Q 009187 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181 (540)
Q Consensus 131 ~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~R 181 (540)
..+.++.+||..+|++...|.+.|++. +| ..|..|+.+
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~---~G----------~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT---TG----------MTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH---TS----------SCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHH
Confidence 568999999999999999998887754 44 446777654
No 143
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.85 E-value=10 Score=29.94 Aligned_cols=7 Identities=29% Similarity=0.947 Sum_probs=4.0
Q ss_pred ecCcccc
Q 009187 22 CCDRCGK 28 (540)
Q Consensus 22 VCt~CG~ 28 (540)
+|..||.
T Consensus 42 ~CP~Cga 48 (70)
T 1dx8_A 42 MCPACRS 48 (70)
T ss_dssp BCTTTCC
T ss_pred cCCCCCC
Confidence 5555555
No 144
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=40.81 E-value=26 Score=25.36 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=27.5
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
.+..|||..++++..++......+.+.|+..
T Consensus 14 ~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 14 YTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp CCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 4779999999999999999988888888864
No 145
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=40.38 E-value=9.9 Score=39.04 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=14.3
Q ss_pred eecCcccceecccccccccccc
Q 009187 21 LCCDRCGKVLEDHNFSTEATFV 42 (540)
Q Consensus 21 ~VCt~CG~Vlee~~Ids~~ef~ 42 (540)
..|..||.|.-....+.+..|.
T Consensus 54 ~~C~~Cg~v~~~~~~~~~~~y~ 75 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEVPRDLMFH 75 (416)
T ss_dssp EEETTTCCEEESSCCCHHHHSS
T ss_pred EECCCCCceeecCcCCHHHhcc
Confidence 4699999998765444333343
No 146
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=40.20 E-value=53 Score=27.81 Aligned_cols=71 Identities=6% Similarity=0.098 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-CHHHHHHHHHH
Q 009187 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQ 156 (540)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V-~~~~Lgr~~~~ 156 (540)
|.++|..+|++ . .+-.++|+......+..-.....+-.|+-++. ....++.|||..+|. +...+.+.|++
T Consensus 30 l~~lA~~~~~S--~---~~l~r~fk~~~G~s~~~~l~~~Rl~~A~~lL~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~ 100 (129)
T 1bl0_A 30 LEKVSERSGYS--K---WHLQRMFKKETGHSLGQYIRSRKMTEIAQKLK----ESNEPILYLAERYGFESQQTLTRTFKN 100 (129)
T ss_dssp CHHHHHHSSSC--H---HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCcC--H---HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 45688888888 3 23344566554443322222222333444442 245799999999994 67888888776
Q ss_pred H
Q 009187 157 L 157 (540)
Q Consensus 157 L 157 (540)
.
T Consensus 101 ~ 101 (129)
T 1bl0_A 101 Y 101 (129)
T ss_dssp H
T ss_pred H
Confidence 5
No 147
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=39.87 E-value=55 Score=29.45 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhcC---CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 115 TEQVQASCLYLACRQKS---KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 115 ~~~vaAACLYiACR~e~---~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
...-++..|..-+...+ .|.|..+||+.+|++..++.|..++|.+.
T Consensus 148 ~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 148 LDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp HHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 33444444444344333 58899999999999999999999999875
No 148
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=39.50 E-value=1.4e+02 Score=29.79 Aligned_cols=77 Identities=10% Similarity=-0.072 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHhhCCCCCHHHHHHHHHHHHhhccc---ccccCCChhhHHHHHHHHHHHhcC-CCCCHHHHHHHHcccH
Q 009187 173 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD---WITTGRKPSGLCGAALYVSALTHG-LKFSKSDIIEDFMARK 248 (540)
Q Consensus 173 ~dP~~~I~Rf~~~L~~~~~~~V~~~A~~Iv~~m~~~---~i~tGR~P~~IAaAALylAa~~~g-~~~t~~eI~~~~~~~~ 248 (540)
+.-..||.|+...-.. +..+.-.|+-++.++... ...+.....=+-.+||.+|+.+++ .-.+.+.++++.|++.
T Consensus 75 ISI~~Yl~RI~k~t~l--s~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl 152 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSL--EHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRC 152 (293)
T ss_dssp SCHHHHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCH
T ss_pred CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCH
Confidence 4556677777666553 788888888888887652 334567888899999999998865 4578899999998887
Q ss_pred HHH
Q 009187 249 KEL 251 (540)
Q Consensus 249 ~ti 251 (540)
.+|
T Consensus 153 ~EL 155 (293)
T 2pmi_B 153 HEL 155 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 149
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=39.29 E-value=60 Score=29.38 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.+..++|.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 58999999999999999999999999875
No 150
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=38.87 E-value=11 Score=31.02 Aligned_cols=16 Identities=19% Similarity=0.599 Sum_probs=12.3
Q ss_pred CCceecCcccceeccc
Q 009187 18 DSQLCCDRCGKVLEDH 33 (540)
Q Consensus 18 ~G~~VCt~CG~Vlee~ 33 (540)
...++|+.||.|.++.
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 3568899999988754
No 151
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=38.66 E-value=10 Score=32.62 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCeeee-cCCCceecCcccceecccc
Q 009187 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHN 34 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D-~~~G~~VCt~CG~Vlee~~ 34 (540)
|..||+||..+-+.. .......|..||.-+-+..
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~~ 39 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHSLFDGE 39 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCBTTCCC
T ss_pred EEECcccccccCCCCcccccCCcchhcCCccccCC
Confidence 346999999753333 3355678999999775543
No 152
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=38.58 E-value=26 Score=31.70 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 116 ~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
..-+-+.+|+|-.. +.|.+..+||..++++...|.+.+..|.+.
T Consensus 12 ~yAlr~l~~La~~~-~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 12 SVAVHSILYLDAHR-DSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHHTTT-TSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33445677888643 678999999999999999999998888875
No 153
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=38.16 E-value=15 Score=33.94 Aligned_cols=27 Identities=19% Similarity=0.621 Sum_probs=21.6
Q ss_pred CCCC--CCCCCeeeecCCCceecCcccceec
Q 009187 3 WCSS--CARHVTGHRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 3 ~Cp~--Cgs~~iv~D~~~G~~VCt~CG~Vle 31 (540)
.||. |+... .+...|...|..||...+
T Consensus 45 aC~~~~CnKKv--~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKKV--IDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCBC--EEETTTEEEETTTTEEES
T ss_pred CCCchhcCCcc--ccCCCCeEECCCCCCcCC
Confidence 5999 99873 355679999999998765
No 154
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=37.82 E-value=14 Score=34.97 Aligned_cols=28 Identities=14% Similarity=0.436 Sum_probs=20.4
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceecc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee 32 (540)
.|++||..... ......+|..||.|...
T Consensus 12 ~Cw~C~~~~~~--~~~~~~fC~~c~~~q~~ 39 (207)
T 3bvo_A 12 RCWNCGGPWGP--GREDRFFCPQCRALQAP 39 (207)
T ss_dssp BCSSSCCBCCS--SCSCCCBCTTTCCBCCC
T ss_pred CCCCCCCCccc--ccccccccccccccCCC
Confidence 69999975211 13578999999998753
No 155
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=37.80 E-value=58 Score=27.55 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHH
Q 009187 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (540)
Q Consensus 116 ~~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L 157 (540)
..+..++-||--. -..+.++.++|..++++...|.+.|++.
T Consensus 11 ~~i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 11 ITIHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344455555443 3446899999999999999998777644
No 156
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=37.07 E-value=11 Score=32.36 Aligned_cols=8 Identities=25% Similarity=1.057 Sum_probs=4.4
Q ss_pred ecCcccce
Q 009187 22 CCDRCGKV 29 (540)
Q Consensus 22 VCt~CG~V 29 (540)
.|..||.-
T Consensus 92 ~CP~Cgs~ 99 (119)
T 2kdx_A 92 VCEKCHSK 99 (119)
T ss_dssp CCSSSSSC
T ss_pred cCccccCC
Confidence 55555554
No 157
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=37.04 E-value=80 Score=28.72 Aligned_cols=29 Identities=7% Similarity=-0.054 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 58899999999999999999999998775
No 158
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=36.55 E-value=20 Score=24.14 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHcccHHHHhhh
Q 009187 234 KFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 234 ~~t~~eI~~~~~~~~~ti~~~ 254 (540)
..|.++||+.++++..|+.+.
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~ 41 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVY 41 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 468999999999999999887
No 159
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=36.49 E-value=38 Score=27.37 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=28.0
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
.+.++||..+++++.++......+.+.|++.
T Consensus 45 ~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 45 FTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999998864
No 160
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=36.21 E-value=48 Score=29.53 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..+|.|..++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999998875
No 161
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.49 E-value=44 Score=24.93 Aligned_cols=33 Identities=6% Similarity=0.103 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
-..++.|||..++++..++........+.|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999998888888877643
No 162
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.21 E-value=48 Score=24.68 Aligned_cols=31 Identities=13% Similarity=-0.054 Sum_probs=27.6
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
.+..+||..++++..++......+.+.|+..
T Consensus 27 ~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 27 KTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 4899999999999999999999988888753
No 163
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=33.88 E-value=55 Score=29.18 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999998875
No 164
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=33.85 E-value=15 Score=28.75 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=17.2
Q ss_pred CCCCCCCCCCC-----eeeecCCCceecCcccc
Q 009187 1 MVWCSSCARHV-----TGHRPYDSQLCCDRCGK 28 (540)
Q Consensus 1 m~~Cp~Cgs~~-----iv~D~~~G~~VCt~CG~ 28 (540)
|..|.-||... ++. ..|..||..|=.
T Consensus 18 ~~~CSFCGK~e~eV~~LIa--GpgvyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIA--GPSVYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEE--CSSCEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCC--CCCCChhHHHHH
Confidence 35799999752 222 246789998843
No 165
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=33.83 E-value=2.9e+02 Score=26.04 Aligned_cols=140 Identities=12% Similarity=0.166 Sum_probs=76.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHHHhCcccCCCchh-HHHHHHHHHHHHhcCC-CCCHHH
Q 009187 63 YGASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTE-QVQASCLYLACRQKSK-PFLLID 138 (540)
Q Consensus 63 ~~~srer~L~~a~~~I~~ia~~L~Lp~~--~~i~e~A~~iyk~a~~~~~~rGR~~~-~vaAACLYiACR~e~~-prtL~D 138 (540)
..++.-..+..++..|..++..++.... ......+..++-..+++.+..+|... .-+..|+...+..... ...+.+
T Consensus 64 l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~ 143 (278)
T 4ffb_C 64 ITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVEL 143 (278)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4466666677888889988887765411 23444556666667776665555432 2222333333333322 233445
Q ss_pred HHHHhC-cCHHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhh---CCCCCHHHHHHHHHHHHhhc
Q 009187 139 FSNYLN-INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL---LPGGNKKVCDTARDILASMK 206 (540)
Q Consensus 139 Is~vl~-V~~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L---~~~~~~~V~~~A~~Iv~~m~ 206 (540)
+...++ -+.+....+...|.+.|.--... .++|..++..++..| ..+.+..|...|..++-.+.
T Consensus 144 l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~----~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 144 VIPFFEKKLPKLIAAAANCVYELMAAFGLT----NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HGGGGGCSCHHHHHHHHHHHHHHHHHHTTT----TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHhCCC----cCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 544443 35555555555555544311111 256666666655444 24567889999988876654
No 166
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=33.55 E-value=70 Score=29.34 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.|+.++|.+.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 57899999999999999999999998775
No 167
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=33.43 E-value=19 Score=27.86 Aligned_cols=24 Identities=25% Similarity=0.721 Sum_probs=14.2
Q ss_pred CCCCCCCCCeeeecCCCceecCcccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~ 28 (540)
.|..||...- .+ ....+-|..||.
T Consensus 23 ~C~~Cg~~~~-l~-~~~~iRC~~CG~ 46 (63)
T 3h0g_L 23 LCADCGARNT-IQ-AKEVIRCRECGH 46 (63)
T ss_dssp BCSSSCCBCC-CC-SSSCCCCSSSCC
T ss_pred ECCCCCCeee-cC-CCCceECCCCCc
Confidence 4777776522 22 235577777775
No 168
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=33.39 E-value=63 Score=29.54 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHHhhc
Q 009187 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (540)
Q Consensus 131 ~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i 163 (540)
..|.|..+||+.+|++..+|.|..++|.+. |+
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~-gi 207 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAA-GV 207 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGG-TE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC-Ce
Confidence 468899999999999999999999888775 45
No 169
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=33.07 E-value=18 Score=25.90 Aligned_cols=22 Identities=5% Similarity=0.211 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHcccHHHHhhh
Q 009187 233 LKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 233 ~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
...|+++||+.++++..|+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 3469999999999999999876
No 170
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=32.96 E-value=20 Score=31.36 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCeeeecCCCceecCccccee
Q 009187 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vl 30 (540)
|+.|+-=++.........|.++|..||.-|
T Consensus 1 ~~~c~~~~ge~y~~~~~~GiY~C~~Cg~pL 30 (124)
T 2kao_A 1 MSFCSFFGGEVFQNHFEPGVYVCAKCSYEL 30 (124)
T ss_dssp CCCCCCCCSCTTTTCCCCCEEEESSSCCCC
T ss_pred CccccccccccccCCCCCEEEEeCCCCCcc
Confidence 677765444422112368999999999987
No 171
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.84 E-value=23 Score=28.20 Aligned_cols=29 Identities=24% Similarity=0.679 Sum_probs=19.9
Q ss_pred CCCCCC--CCCCCeeeecCCCceecC-----ccccee
Q 009187 1 MVWCSS--CARHVTGHRPYDSQLCCD-----RCGKVL 30 (540)
Q Consensus 1 m~~Cp~--Cgs~~iv~D~~~G~~VCt-----~CG~Vl 30 (540)
+++||. |+...+ .++....+.|. .||.+.
T Consensus 25 ~~~CP~p~C~~~v~-~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 25 GVLCPRPGCGAGLL-PEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SCCCCSSSCCCCCC-CCSCTTSBCTTSSSTTCCSCCE
T ss_pred cEECCCCCCCcccE-ECCCCCcCCCCCCCCCCCCCee
Confidence 368998 887633 34455678887 888753
No 172
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=32.75 E-value=59 Score=29.38 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 131 ~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
..|.|..+||+.+|++..++.+..++|.+.
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 468899999999999999999999999886
No 173
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=32.69 E-value=62 Score=28.87 Aligned_cols=29 Identities=7% Similarity=-0.122 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.+..++|.+.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999998875
No 174
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=32.54 E-value=1.6e+02 Score=24.28 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 122 CLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|++..+..+.|.+..+|+..++++...+.+....|.+.
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 444444444458999999999999999999998888875
No 175
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=32.50 E-value=18 Score=30.31 Aligned_cols=22 Identities=23% Similarity=0.714 Sum_probs=17.2
Q ss_pred CCCCCCCCCeeeecCCCceecCcccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~ 28 (540)
.|+.||....-. --..|..||+
T Consensus 18 lCrRCG~~sfH~----qK~~CgkCGY 39 (97)
T 2zkr_2 18 LCRRCGSKAYHL----QKSTCGKCGY 39 (97)
T ss_dssp CCTTTCSSCEET----TSCCBTTTCT
T ss_pred cCCCCCCccCcC----ccccCcccCC
Confidence 599999985532 3569999999
No 176
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=31.82 E-value=2e+02 Score=23.56 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 133 PFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 133 prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
|.+..+|+..++++...+.+....|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999998888875
No 177
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.55 E-value=52 Score=25.77 Aligned_cols=31 Identities=6% Similarity=0.002 Sum_probs=27.5
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
.+..|||..++++..++......+.+.|+..
T Consensus 37 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 37 LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999998888888888753
No 178
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.25 E-value=54 Score=24.85 Aligned_cols=32 Identities=6% Similarity=-0.059 Sum_probs=27.9
Q ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 133 prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
..+..+||..++++..++......+.+.|+..
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999999888888888753
No 179
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.50 E-value=68 Score=24.20 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHHhh
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~ 162 (540)
...++.|||..++++..++........+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999887777766665
No 180
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.45 E-value=59 Score=26.21 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=27.9
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
.+.++||..++++..++......+.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999988865
No 181
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.12 E-value=60 Score=26.75 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.6
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
.+.+|||..+++++.++......+.+.|++.
T Consensus 50 ~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 50 FLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4779999999999999999888898888864
No 182
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=28.92 E-value=14 Score=32.82 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=9.1
Q ss_pred eecCCCceecCcccceec
Q 009187 14 HRPYDSQLCCDRCGKVLE 31 (540)
Q Consensus 14 ~D~~~G~~VCt~CG~Vle 31 (540)
+....+...|.+||.+.+
T Consensus 64 i~~~p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 64 FVEEEAVFKCRNCNYEWK 81 (139)
T ss_dssp EEEECCEEEETTTCCEEE
T ss_pred EEecCCcEECCCCCCEEe
Confidence 333445555555555543
No 183
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=28.59 E-value=1.1e+02 Score=27.69 Aligned_cols=29 Identities=0% Similarity=0.032 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999998875
No 184
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=28.34 E-value=72 Score=26.94 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=30.5
Q ss_pred HHHHHHhcCCC-CCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 123 LYLACRQKSKP-FLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 123 LYiACR~e~~p-rtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
+|.+...++-| .|..||++.++++..++.+....|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44444556667 899999999999999999888888764
No 185
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=28.22 E-value=67 Score=26.72 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHH
Q 009187 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156 (540)
Q Consensus 117 ~vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~ 156 (540)
.+..++-||--... .+.++.++|..++++...|.+.|++
T Consensus 8 ~~~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIA-HEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTT-SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34445556554433 3899999999999999999877653
No 186
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=28.08 E-value=20 Score=26.49 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=15.2
Q ss_pred CCCCCCCCCCC-----eeeecCCCceecCcc
Q 009187 1 MVWCSSCARHV-----TGHRPYDSQLCCDRC 26 (540)
Q Consensus 1 m~~Cp~Cgs~~-----iv~D~~~G~~VCt~C 26 (540)
|..|.-||... ++. ..|..+|..|
T Consensus 11 ~~~CSFCGk~~~ev~~LIa--Gpgv~IC~eC 39 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIA--GPSVYICDEC 39 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEE--CSSCEEEHHH
T ss_pred CcEecCCCCCHHHhcccCC--CCCCEehHHH
Confidence 34789998752 222 2367788887
No 187
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=27.89 E-value=23 Score=23.37 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=9.8
Q ss_pred CCCceecCcccce
Q 009187 17 YDSQLCCDRCGKV 29 (540)
Q Consensus 17 ~~G~~VCt~CG~V 29 (540)
..|+.+|..||.+
T Consensus 2 k~gDW~C~~C~~~ 14 (32)
T 2lk0_A 2 KFEDWLCNKCCLN 14 (32)
T ss_dssp CCSEEECTTTCCE
T ss_pred CCCCCCcCcCcCC
Confidence 3578888888876
No 188
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.83 E-value=1e+02 Score=28.89 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..+|.|..++|.+.
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999998875
No 189
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.78 E-value=72 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHHhhc
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i 163 (540)
-..|+.|||..+++++.++........+.|..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998888777777764
No 190
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=27.70 E-value=79 Score=28.59 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.+..+||+.+|++..++.|..++|.+.
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999998875
No 191
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=27.54 E-value=64 Score=25.74 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.+.+..+||..++++...|.+...+|.+.
T Consensus 26 ~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 26 KATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 57899999999999999999988888764
No 192
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.92 E-value=18 Score=31.26 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCCCCCCCC-eeee-cCCCceecCcccceec
Q 009187 3 WCSSCARHV-TGHR-PYDSQLCCDRCGKVLE 31 (540)
Q Consensus 3 ~Cp~Cgs~~-iv~D-~~~G~~VCt~CG~Vle 31 (540)
.|.+||... ..|. ..+|.++|-.||.+.-
T Consensus 7 ~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 7 ECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 699999763 3343 3478999999998653
No 193
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=26.39 E-value=66 Score=29.19 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.++.++|.+.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999998875
No 194
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=26.26 E-value=31 Score=31.52 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=17.4
Q ss_pred CCCCCCCCCeeeecCCCceecCcccce
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~V 29 (540)
.||.|++ .++++. |.++|+ |.+
T Consensus 80 ~CP~C~G-~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 80 PCEECSG-QLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCTTTCC-CEEEET--TEEEEC--CEE
T ss_pred CCCCCCC-EEEEeC--CeEEEC--CCC
Confidence 6999994 677764 899998 555
No 195
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=25.87 E-value=1.2e+02 Score=27.74 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=26.4
Q ss_pred C-CCCHHHHHHHhCcCH-HHHHHHHHHHHHH
Q 009187 132 K-PFLLIDFSNYLNINV-YELGAVYLQLCQV 160 (540)
Q Consensus 132 ~-prtL~DIs~vl~V~~-~~Lgr~~~~L~~~ 160 (540)
. |.|..+||+.+|++. .+|.|..++|.+.
T Consensus 167 ~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 167 LDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 5 789999999999999 7999999998775
No 196
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.79 E-value=79 Score=23.11 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=24.6
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhh
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~ 162 (540)
.+..+||..++++...+.+......+.|.
T Consensus 32 ~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 32 LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 67899999999999999888777777665
No 197
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.78 E-value=1e+02 Score=24.08 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 131 ~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
+-+.|..|||..++++..+|.+...+|.+.
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999888888764
No 198
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=25.72 E-value=72 Score=25.27 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=22.0
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhh
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~ 162 (540)
.+..+||..++++..+|.....+..+.|.
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36799999999999888766655555543
No 199
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=25.55 E-value=38 Score=28.17 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCCCCCCC--CeeeecCCCceecCcccc
Q 009187 3 WCSSCARH--VTGHRPYDSQLCCDRCGK 28 (540)
Q Consensus 3 ~Cp~Cgs~--~iv~D~~~G~~VCt~CG~ 28 (540)
.||.|+.. .+.+++..|...|-.||.
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 59999864 466777788999999994
No 200
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=25.24 E-value=35 Score=35.75 Aligned_cols=28 Identities=18% Similarity=0.597 Sum_probs=21.6
Q ss_pred CCCC--CCCCCeeeecCCCceecCcccceecc
Q 009187 3 WCSS--CARHVTGHRPYDSQLCCDRCGKVLED 32 (540)
Q Consensus 3 ~Cp~--Cgs~~iv~D~~~G~~VCt~CG~Vlee 32 (540)
.||. |+.. +.+...|...|..||.+.++
T Consensus 310 aC~~~~C~kk--v~~~~~g~~~C~~C~~~~~~ 339 (444)
T 4gop_C 310 ACASEGCNKK--VNLDHENNWRCEKCDRSYAT 339 (444)
T ss_dssp ECCSTTCCCB--EEECTTSCEEETTTTEEESS
T ss_pred cCCcccCCCc--cccCCCccEECCCCCCcCcc
Confidence 4999 9986 33445789999999988653
No 201
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=25.07 E-value=1.3e+02 Score=23.08 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
-|.+..|||+.++++...+.+....|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999888888764
No 202
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=24.98 E-value=1.4e+02 Score=26.98 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHh--------cCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 116 EQVQASCLYLACRQ--------KSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 116 ~~vaAACLYiACR~--------e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
..++...+.++-+. -..|.|..+||+.+|++..++.|..++|.+.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 34554555555432 2358899999999999999999999999875
No 203
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=24.93 E-value=37 Score=26.05 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHhCcCHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAV 153 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~ 153 (540)
...|+.|||..+||+..+|.++
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 3569999999999999998764
No 204
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.51 E-value=1e+02 Score=23.31 Aligned_cols=42 Identities=5% Similarity=0.010 Sum_probs=27.9
Q ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHHHhhccccccccccCChhhHHHHHHHhhCC
Q 009187 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188 (540)
Q Consensus 133 prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~~~p~~~~~~dP~~~I~Rf~~~L~~ 188 (540)
..|..++|..+||+...|.+... | ... . +...+.+++..|+.
T Consensus 25 gltq~~lA~~~gvs~~~is~~e~------g-~~~------~-~~~~~~~ia~~l~v 66 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFN------G-INA------L-NAYNAALLAKILKV 66 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHT------T-SSC------C-CHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc------C-CCC------C-CHHHHHHHHHHhCC
Confidence 46889999999999888864321 1 111 1 23667788888863
No 205
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=24.48 E-value=89 Score=27.88 Aligned_cols=29 Identities=7% Similarity=-0.013 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 132 ~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999886
No 206
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.25 E-value=55 Score=25.97 Aligned_cols=31 Identities=6% Similarity=0.076 Sum_probs=27.3
Q ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHHhhcc
Q 009187 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr~~~~L~~~L~i~ 164 (540)
.+..|||..++++..++......+.+.|+..
T Consensus 45 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 45 YSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp CCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 5778999999999999999888888888764
No 207
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=24.17 E-value=29 Score=23.10 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=10.9
Q ss_pred CCCceecCcccce
Q 009187 17 YDSQLCCDRCGKV 29 (540)
Q Consensus 17 ~~G~~VCt~CG~V 29 (540)
..|+.+|..||.+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 3689999999987
No 208
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=24.14 E-value=1.8e+02 Score=29.34 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-CHHHHHHHHHH
Q 009187 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQ 156 (540)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~prtL~DIs~vl~V-~~~~Lgr~~~~ 156 (540)
|..+|..++++ . .+-.++|+......+..-.....+..|+-++. ....++.+||..+|. +...+.+.|++
T Consensus 324 ~~~~a~~~~~s--~---~~l~r~f~~~~g~s~~~~~~~~r~~~a~~~L~----~~~~~i~~ia~~~Gf~~~~~f~~~Fk~ 394 (412)
T 4fe7_A 324 VDQVLDAVGIS--R---SNLEKRFKEEVGETIHAMIHAEKLEKARSLLI----STTLSINEISQMCGYPSLQYFYSVFKK 394 (412)
T ss_dssp HHHHHHHTTCC--H---HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCcC--H---HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 66688899998 3 34445566665554433333333444555542 345799999999995 78888888776
Q ss_pred HHHHhhccccccccccCChhhHHHHH
Q 009187 157 LCQVLYIADESNVLKQVDPSIFLHKF 182 (540)
Q Consensus 157 L~~~L~i~~~p~~~~~~dP~~~I~Rf 182 (540)
. .| +.|..|-.++
T Consensus 395 ~---~g----------~tP~~~r~~~ 407 (412)
T 4fe7_A 395 A---YD----------TTPKEYRDVN 407 (412)
T ss_dssp H---SS----------SCHHHHHHHH
T ss_pred H---HC----------cCHHHHHHhc
Confidence 5 33 4577776654
No 209
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=23.93 E-value=37 Score=32.41 Aligned_cols=26 Identities=27% Similarity=0.718 Sum_probs=20.2
Q ss_pred CCCCCCCC-CeeeecCCCceecCcccc
Q 009187 3 WCSSCARH-VTGHRPYDSQLCCDRCGK 28 (540)
Q Consensus 3 ~Cp~Cgs~-~iv~D~~~G~~VCt~CG~ 28 (540)
.|-.||.. ...+++..|-.+|..|+.
T Consensus 152 ~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 152 RCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp BCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred ccccCCCCCCCcEecccCEEECcccCC
Confidence 58889876 345778889999999964
No 210
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.47 E-value=47 Score=26.92 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=17.2
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceecc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee 32 (540)
.||.|+.. +.++ .+...|..||.-+..
T Consensus 4 ~CP~C~~~-l~~~--~~~~~C~~C~~~~~~ 30 (81)
T 2jrp_A 4 TCPVCHHA-LERN--GDTAHCETCAKDFSL 30 (81)
T ss_dssp CCSSSCSC-CEEC--SSEEECTTTCCEEEE
T ss_pred CCCCCCCc-cccC--CCceECccccccCCC
Confidence 68999876 3343 455557777765543
No 211
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=23.42 E-value=22 Score=30.66 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=4.7
Q ss_pred ceecCcccc
Q 009187 20 QLCCDRCGK 28 (540)
Q Consensus 20 ~~VCt~CG~ 28 (540)
..+|.+||+
T Consensus 59 ~~~C~~C~t 67 (115)
T 4hc9_A 59 GTSCANCQT 67 (115)
T ss_dssp TCCCTTTCC
T ss_pred cccCCCcCC
Confidence 445555554
No 212
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=23.27 E-value=2.4e+02 Score=23.54 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=27.3
Q ss_pred hcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 129 ~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
.++ |.++.+++..++++...+.+....|.+.
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344 8999999999999999999998888875
No 213
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=23.22 E-value=39 Score=26.84 Aligned_cols=20 Identities=5% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHcccHHHHhh
Q 009187 234 KFSKSDIIEDFMARKKELHE 253 (540)
Q Consensus 234 ~~t~~eI~~~~~~~~~ti~~ 253 (540)
.++..++++.|++++.|||.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRr 35 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINA 35 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHH
No 214
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.00 E-value=2.5e+02 Score=23.09 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 122 CLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
+|++..+..+-|.++.||+..++++...+.+....|.+.
T Consensus 36 vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 36 TLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp HHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 333333333368999999999999999999998888775
No 215
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=28.42 E-value=18 Score=28.45 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=34.9
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHhCcCHHHHHHHHHHHHHHhh
Q 009187 122 CLYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (540)
Q Consensus 122 CLYiACR~e~~-prtL~DIs~vl~V~~~~Lgr~~~~L~~~L~ 162 (540)
.|..+|++.|. |-++.-||..++-++..|...|.+|.+.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 46778998886 889999999999999999999999887654
No 216
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=22.46 E-value=43 Score=31.32 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=17.0
Q ss_pred CCCCCCCCCeeeecCCCceecCccccee
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vl 30 (540)
.||.||...+--.+. .-..|..||...
T Consensus 115 ~Cp~Cg~g~fma~h~-dR~~CGkC~~t~ 141 (189)
T 2xzm_9 115 GCPKCGPGIFMAKHY-DRHYCGKCHLTL 141 (189)
T ss_dssp ECSTTCSSCEEEECS-SCEEETTTCCCB
T ss_pred cCCccCCCccccCcc-CCCccCCceeEE
Confidence 488888654433333 355888888764
No 217
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=22.44 E-value=69 Score=24.31 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=17.5
Q ss_pred CHHHHHHHhCcCHHHHHHHH
Q 009187 135 LLIDFSNYLNINVYELGAVY 154 (540)
Q Consensus 135 tL~DIs~vl~V~~~~Lgr~~ 154 (540)
|+.|||..+||+..+|.+++
T Consensus 2 T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 78999999999999997653
No 218
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=22.31 E-value=52 Score=28.77 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCeeeec-CCCceecCcccceec--ccccccc
Q 009187 1 MVWCSSCARHVTGHRP-YDSQLCCDRCGKVLE--DHNFSTE 38 (540)
Q Consensus 1 m~~Cp~Cgs~~iv~D~-~~G~~VCt~CG~Vle--e~~Ids~ 38 (540)
|+.|..=++. +-.|. ..|.++|..||.-|= +.-++++
T Consensus 1 ~sFC~~F~ge-~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg 40 (124)
T 2kv1_A 1 MSFCSFFGGE-VFQNHFEPGVYVCAKCSYELFSSHSKYAHS 40 (124)
T ss_dssp CCCCCCCCSC-SGGGTTCCEEEEETTTCCBCCCTTSCCCCC
T ss_pred CccccCccCc-cccCCCCCEEEEecCCCCcccccCCcccCC
Confidence 6666543333 22343 579999999999873 2335544
No 219
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=21.88 E-value=31 Score=30.19 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=15.3
Q ss_pred CCCC-CCCCCeeeecCCCceecCcccceecc
Q 009187 3 WCSS-CARHVTGHRPYDSQLCCDRCGKVLED 32 (540)
Q Consensus 3 ~Cp~-Cgs~~iv~D~~~G~~VCt~CG~Vlee 32 (540)
+|+. ||.-..+.....|.++| ||.-++.
T Consensus 9 kC~~~CGnivev~~~g~~~l~C--CG~~m~~ 37 (128)
T 1y07_A 9 LQKESAGFFLGMDAPAGSSVAC--GSEVLRA 37 (128)
T ss_dssp CC-----CEEEESCCTTCEEEE--TTEEEEC
T ss_pred ECCCCCCCEEEEEcCCCcceee--cCccccc
Confidence 5999 98754333445677788 8877653
No 220
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=21.88 E-value=20 Score=31.52 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=13.3
Q ss_pred cCCCceecCcccceec
Q 009187 16 PYDSQLCCDRCGKVLE 31 (540)
Q Consensus 16 ~~~G~~VCt~CG~Vle 31 (540)
-.+|.++|.+||.+..
T Consensus 95 V~EG~L~Cp~cgr~yp 110 (125)
T 3q87_A 95 VVEGSLRCDMCGLIYP 110 (125)
T ss_dssp EEEEEEEETTTCCEEE
T ss_pred EEEEEEECCCCCCEee
Confidence 3579999999999853
No 221
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.60 E-value=44 Score=28.43 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=17.1
Q ss_pred CCCCCCCCCeeeecCCCceecCcccceeccc
Q 009187 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VCt~CG~Vlee~ 33 (540)
.|..|++. .+..+|-.||.|-=.+
T Consensus 26 ~C~~C~~~-------~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 26 PCGDCGTI-------QENWVCLSCYQVYCGR 49 (109)
T ss_dssp CCTTTCCC-------SSEEEETTTCCEEECT
T ss_pred cCccccCC-------CCeeeeeecCccccCC
Confidence 47888765 3567899999987543
No 222
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=21.60 E-value=71 Score=26.58 Aligned_cols=19 Identities=0% Similarity=0.001 Sum_probs=16.5
Q ss_pred CCHHHHHHHhCcCHHHHHH
Q 009187 134 FLLIDFSNYLNINVYELGA 152 (540)
Q Consensus 134 rtL~DIs~vl~V~~~~Lgr 152 (540)
.+.+.||+.+||+..+|.|
T Consensus 24 ~gq~~vA~~iGV~~StISR 42 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISR 42 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHH
T ss_pred HhHHHHHHHhCCCHHHHHH
Confidence 4678899999999999887
No 223
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=20.70 E-value=2.3e+02 Score=23.46 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 009187 133 PFLLIDFSNYLNINVYELGAVYLQLCQV 160 (540)
Q Consensus 133 prtL~DIs~vl~V~~~~Lgr~~~~L~~~ 160 (540)
|.+..+|+..++++...+.+....|.+.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999988888775
No 224
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=20.50 E-value=47 Score=27.96 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHcccHHHHhhh
Q 009187 233 LKFSKSDIIEDFMARKKELHEG 254 (540)
Q Consensus 233 ~~~t~~eI~~~~~~~~~ti~~~ 254 (540)
-..||++|++.+|++-+||-.-
T Consensus 57 ge~TQREIA~~lGiS~stISRi 78 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHH
Confidence 3599999999999999887543
No 225
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=20.30 E-value=1.2e+02 Score=23.97 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=28.0
Q ss_pred HhcCCCCCHHHHHHHhCcCHHH-HHHHHHHHHHH
Q 009187 128 RQKSKPFLLIDFSNYLNINVYE-LGAVYLQLCQV 160 (540)
Q Consensus 128 R~e~~prtL~DIs~vl~V~~~~-Lgr~~~~L~~~ 160 (540)
..++-+.++.||+..++++... +.+....|.+.
T Consensus 25 ~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 3455579999999999999999 99988888775
No 226
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=20.21 E-value=25 Score=31.30 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=19.2
Q ss_pred CCCCCCCCCeeeec-CCCceecCcccceec
Q 009187 3 WCSSCARHVTGHRP-YDSQLCCDRCGKVLE 31 (540)
Q Consensus 3 ~Cp~Cgs~~iv~D~-~~G~~VCt~CG~Vle 31 (540)
.|-.||.....|-. .-|.++|..|.-|--
T Consensus 27 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR 56 (140)
T 2olm_A 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLR 56 (140)
T ss_dssp SCTTTCSSCCCEEETTTTEEECHHHHHHHT
T ss_pred cCCCCCCCCCCceeeccCEEEchhccchhc
Confidence 57788876555432 358888888877643
No 227
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=20.06 E-value=97 Score=25.96 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Q 009187 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQ 159 (540)
Q Consensus 131 ~~prtL~DIs~vl~V~~~~Lgr~~~~L~~ 159 (540)
+-++|.+|||..+|++..+|.|. ++..+
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~L~ 83 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNSLK 83 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHHHH
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHHHH
Confidence 34689999999999999999988 44333
No 228
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=20.05 E-value=93 Score=29.67 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHH
Q 009187 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (540)
Q Consensus 118 vaAACLYiACR~e~~prtL~DIs~vl~V~~~~Lgr~~~~L 157 (540)
+..++-||--.. ..+.++.++|..++++...|.+.|++.
T Consensus 5 ~~~~~~~i~~~~-~~~~~~~~la~~~~~s~~~l~r~f~~~ 43 (292)
T 1d5y_A 5 IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDV 43 (292)
T ss_dssp HHHHHHHHHTTS-SSSCCCHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344555665443 568999999999999999998886644
Done!