BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009188
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 91
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 152 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 268
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 327
Query: 512 TIRIW 516
TI++W
Sbjct: 328 TIKLW 332
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 48 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHK---LGISDVAWSSDSNL 103
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 161
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 42 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 78
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 72
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 133 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 249
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 250 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 308
Query: 512 TIRIW 516
TI++W
Sbjct: 309 TIKLW 313
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 29 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 84
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 142
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 23 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 59
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 73
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 134 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 250
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 309
Query: 512 TIRIW 516
TI++W
Sbjct: 310 TIKLW 314
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 85
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 143
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 24 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 60
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 89
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 150 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 266
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 325
Query: 512 TIRIW 516
TI++W
Sbjct: 326 TIKLW 330
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 46 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHK---LGISDVAWSSDSNL 101
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 159
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 40 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 76
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 68
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 129 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 245
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 246 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 304
Query: 512 TIRIW 516
TI++W
Sbjct: 305 TIKLW 309
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 80
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 138
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 19 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 55
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 67
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 128 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 244
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 303
Query: 512 TIRIW 516
TI++W
Sbjct: 304 TIKLW 308
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 79
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 137
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 18 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 54
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 66
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 127 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 185 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 243
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 302
Query: 512 TIRIW 516
TI++W
Sbjct: 303 TIKLW 307
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 23 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 78
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 136
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 17 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 53
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 73
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 134 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 250
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 309
Query: 512 TIRIW 516
TI++W
Sbjct: 310 TIKLW 314
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 85
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 143
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 24 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 60
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 163/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 70
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K C K + +S + DG I++ + + D + ++
Sbjct: 131 DESVRIWDV--KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ ++ LW+ + K + Y GHK ++ I + F
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 247
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 306
Query: 512 TIRIW 516
TI++W
Sbjct: 307 TIKLW 311
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKT 141
Query: 521 -LNVKRKDCHSN---GVHYCNGGT 540
+ +K HS+ VH+ G+
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGS 165
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L+ L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 18 LMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 57
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 73
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 134 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 250
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 309
Query: 512 TIRIW 516
TI++W
Sbjct: 310 TIKLW 314
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 85
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 143
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 24 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 60
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 84
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 145 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 261
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 320
Query: 512 TIRIW 516
TI++W
Sbjct: 321 TIKLW 325
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 96
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 154
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 35 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 71
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 67
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 128 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 244
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 303
Query: 512 TIRIW 516
TI++W
Sbjct: 304 TIKLW 308
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 79
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 137
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 18 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 54
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 63
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 124 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 240
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 299
Query: 512 TIRIW 516
TI++W
Sbjct: 300 TIKLW 304
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 75
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 133
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 14 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 50
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LA+SS D+ IW +G + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGA-YDG--KFEKTISGHKLG 70
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 131 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 247
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 306
Query: 512 TIRIW 516
TI++W
Sbjct: 307 TIKLW 311
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 27 KAVSSVKFSPNGEWLAASSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 140
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 162/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 70
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K C K + +S + DG I++ + + D + ++
Sbjct: 131 DESVRIWDV--KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 247
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 306
Query: 512 TIRIW 516
TI++W
Sbjct: 307 TIKLW 311
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKT 141
Query: 521 -LNVKRKDCHSN---GVHYCNGGT 540
+ +K HS+ VH+ G+
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGS 165
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L+ L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 18 LMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 57
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 70
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 131 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 247
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 306
Query: 512 TIRIW 516
TI+++
Sbjct: 307 TIKLY 311
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 140
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 21 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 57
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 220 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
P+ L+ L GHT V ++FS NG++LASSS D+ IW +G + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLG 70
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
+S V+WSSD L++ ++ ++ WDVSSG CL + + C ++P I SG+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 339 DKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VE 394
D+S+ +W++ K +C K + +S + DG I++ + + D + ++
Sbjct: 131 DESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 395 RYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
I++D SF S + K++L L+ + LW+ + K + Y GHK ++ I + F
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANF 247
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDR 511
+I SGSED+ VYIW+ + +++ L GH+ V + +P +++ASA+ +D+
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDK 306
Query: 512 TIRIW 516
TI+++
Sbjct: 307 TIKLF 311
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
+ ++S S + ++L + ++ I +W + K GHK I +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ S S+D + IW +S + L GHS V C ++NP + +++ S S D ++RIW +K
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVK 140
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
L GH+ AV+ V ++P N LAS+S D+ I+IWG D
Sbjct: 21 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD 57
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 150/294 (51%), Gaps = 14/294 (4%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
LQ L GH+ VW + FS +G+ +AS+S+D++ +W + NG L L+GH V V+
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNG--QLLQTLTGHSSSVRGVA 228
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
+S D Q + + ++ V+ W+ +G L + + PD + I S ++DK++
Sbjct: 229 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK-VERYIEEDQT 402
+W G+ L+ G + + + + DG+ I + + + L +R + ++ +
Sbjct: 288 LWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSS 346
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462
+ + S D + + ++ + LWN G+ L+ GH S +R + IA
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSS---VRGVAFSPDGQTIA 401
Query: 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
S S+D V +W+R + L+ L GHS +V V+++P + +ASASDD+T+++W
Sbjct: 402 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLW 453
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 170/355 (47%), Gaps = 24/355 (6%)
Query: 190 VLQREACMFHNSSDRDMSLYTDHQCGRDQIPSRT----------LQILQGHTDEVWFLQF 239
V +R H+SS R ++ D Q +T LQ L GH+ VW + F
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 65
Query: 240 SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299
S +G+ +AS+S+D++ +W + NG L L+GH V V++S D Q + + ++
Sbjct: 66 SPDGQTIASASDDKTVKLW--NRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359
V+ W+ +G L + + PD + I S ++DK++ +W G+ L+ G
Sbjct: 122 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 180
Query: 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAK-VERYIEEDQTITSFSLSRDNKFLLVN 418
+ + + + DG+ I + + + L +R + ++ ++ + S D + +
Sbjct: 181 S-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 419 LLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC 478
++ + LWN G+ L+ GH S + + IAS S+D V +W+R +
Sbjct: 240 SDDKTVKLWNRNGQ--LLQTLTGHSSS---VNGVAFRPDGQTIASASDDKTVKLWNR-NG 293
Query: 479 DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGV 533
L+ L GHS +V V+++P + +ASASDD+T+++W +++ HS+ V
Sbjct: 294 QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSV 347
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 149/294 (50%), Gaps = 14/294 (4%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
LQ L GH+ VW + FS +G+ +AS+S+D++ +W + NG L L+GH V V+
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNG--QLLQTLTGHSSSVWGVA 187
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
+S D Q + + ++ V+ W+ +G L + + PD + I S ++DK++
Sbjct: 188 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQT 402
+W G+ L+ G + ++ + DG+ I + + + L +R ++ + +
Sbjct: 247 LWNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 305
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462
+ + S D + + ++ + LWN G+ + GH S + + G IA
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQT---IA 360
Query: 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
S S+D V +W+R + L+ L GHS +V V+++P + +ASASDD+T+++W
Sbjct: 361 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 412
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 151/294 (51%), Gaps = 14/294 (4%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
LQ L GH+ V + FS +G+ +AS+S+D++ +W + NG L L+GH V+ V+
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNG--QLLQTLTGHSSSVNGVA 269
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
+ D Q + + ++ V+ W+ +G L + + PD + I S ++DK++
Sbjct: 270 FRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQT 402
+W G+ L+ G + + + + DG+ I + + + L +R ++ + +
Sbjct: 329 LWNRNGQHLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 387
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462
+ + S D + + ++ + LWN G+ L+ GH S + + F +Q IA
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGV--AFSPDDQT-IA 442
Query: 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
S S+D V +W+R + L+ L GHS +V V+++P + +ASASDD+T+++W
Sbjct: 443 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 494
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 149/294 (50%), Gaps = 14/294 (4%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
LQ L GH+ V + F +G+ +AS+S+D++ +W + NG L L+GH V V+
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW--NRNG--QLLQTLTGHSSSVWGVA 310
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
+S D Q + + ++ V+ W+ +G L + + PD + I S ++DK++
Sbjct: 311 FSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 369
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQT 402
+W G+ L+ G + + + + DG+ I + + + L +R ++ + +
Sbjct: 370 LWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 428
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462
+ + S D++ + ++ + LWN G+ L+ GH S +R + IA
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSS---VRGVAFSPDGQTIA 483
Query: 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
S S+D V +W+R + L+ L GHS +V V+++P + +ASASDD+T+++W
Sbjct: 484 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 535
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 149/296 (50%), Gaps = 18/296 (6%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKH--KLSGHQKPVSC 281
LQ L GH+ VW + FS +G+ +AS+S+D++ +W + NG +H L+GH V
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNG----QHLQTLTGHSSSVWG 349
Query: 282 VSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKS 341
V++S D Q + + ++ V+ W+ +G L + + PD + I S ++DK+
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 342 ICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEED 400
+ +W G+ L+ G + + + + D + I + + + L +R ++ +
Sbjct: 409 VKLWNRNGQLLQTLTGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS 467
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
++ + S D + + ++ + LWN G+ L+ GH S +R +
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSS---VRGVAFSPDGQT 522
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
IAS S+D V +W+R + L+ L GHS +V V+++P + +ASAS D+T+++W
Sbjct: 523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLW 576
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 146/294 (49%), Gaps = 14/294 (4%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
LQ L GH+ V + FS +G+ +AS+S+D++ +W + NG L L+GH V V+
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNG--QLLQTLTGHSSSVWGVA 146
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
+S D Q + + ++ V+ W+ +G L + + PD + I S ++DK++
Sbjct: 147 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQT 402
+W G+ L+ G + + + + DG+ I + + + L +R ++ + +
Sbjct: 206 LWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 264
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462
+ + D + + ++ + LWN G+ L+ GH S + + G IA
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT---IA 319
Query: 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
S S+D V +W+R L L GHS +V V+++P + +ASASDD+T+++W
Sbjct: 320 SASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW 371
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 132/275 (48%), Gaps = 13/275 (4%)
Query: 265 GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSC 324
GV +++L H V V++S D Q + + ++ V+ W+ +G L +
Sbjct: 5 GVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 63
Query: 325 GWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384
+ PD + I S ++DK++ +W G+ L+ G + + + + DG+ I + + +
Sbjct: 64 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTV 122
Query: 385 LLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK 443
L +R ++ + ++ + S D + + ++ + LWN G+ L+ GH
Sbjct: 123 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS 180
Query: 444 RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHM 503
S + + G IAS S+D V +W+R + L+ L GHS +V V+++P +
Sbjct: 181 SSVWGVAFSPDGQT---IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQT 235
Query: 504 LASASDDRTIRIWGLKDLNVKRKDCHS---NGVHY 535
+ASASDD+T+++W ++ HS NGV +
Sbjct: 236 IASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAF 270
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 120/252 (47%), Gaps = 12/252 (4%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
LQ L GH+ VW + FS +G+ +AS+S+D++ +W + NG L L+GH V V+
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNG--QLLQTLTGHSSSVRGVA 392
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
+S D Q + + ++ V+ W+ +G L + + PD + I S ++DK++
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK-VERYIEEDQT 402
+W G+ L+ G + + + + DG+ I + + + L +R + ++ +
Sbjct: 452 LWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 510
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462
+ + S D + + ++ + LWN G+ L+ GH S + + G IA
Sbjct: 511 VRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT---IA 565
Query: 463 SGSEDSQVYIWH 474
S S D V +W+
Sbjct: 566 SASSDKTVKLWN 577
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 143/312 (45%), Gaps = 27/312 (8%)
Query: 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS 285
+++ HTD V+ FS +G+ +AS D++ +++ + + + H+ V C ++S
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFS 673
Query: 286 SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGW--HPDRKWIFSGANDKSIC 343
SDD + TC ++ V+ WD ++G +H Y++ + C + + + +G+ND +
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD-------REAKVERY 396
+W+L KE T ++ + D + + + + L L D + V+R+
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
Query: 397 I--EEDQ------TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV 448
ED + S S D ++V N+ + L++I L + GH +
Sbjct: 794 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHST--- 849
Query: 449 IRSC-FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507
I+ C F + + + S+ V +W+ S + GH V+ V ++P L +A
Sbjct: 850 IQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TA 907
Query: 508 SDDRTIRIWGLK 519
SDD+TIR+W K
Sbjct: 908 SDDQTIRVWETK 919
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 127/302 (42%), Gaps = 31/302 (10%)
Query: 228 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWE---VDLNGGVTLKHKLSGHQKPVSCVSW 284
+GH V + FS +G ++S+D++ +WE V N + LK ++ V +
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID--------VVF 937
Query: 285 SSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICM 344
++ +L + +R + +G + + C P +++ G D +I +
Sbjct: 938 QENETMVLAV---DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 994
Query: 345 WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ-TI 403
EL + + ++ T+DGK +I+ ++S + + + + +++ Q T+
Sbjct: 995 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV 1054
Query: 404 TSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV-----IRSCFGGLEQ 458
F L +D++ L W+ +G VK+ G F + SC +
Sbjct: 1055 KDFRLLQDSRLLS----------WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1104
Query: 459 AFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
+S S D IW + L GH+G V C +++ + +LA+ D+ IRIW +
Sbjct: 1105 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNV 1163
Query: 519 KD 520
D
Sbjct: 1164 SD 1165
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
I R + H V S + +S+S D++A IW DL ++ H+L GH
Sbjct: 1080 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL---LSPLHELKGHNGC 1136
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH 312
V C ++S D L T +R W+VS G LH
Sbjct: 1137 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 23/171 (13%)
Query: 369 TSDGKQIITMCKESALLLLDREAKVERYIE----EDQTITSFSLSRDNKFLLVNLLNQEI 424
+ DG++I + + L + E E+ ++ ED+ + + S D+ ++ ++++
Sbjct: 631 SQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCC-AFSSDDSYIATCSADKKV 688
Query: 425 HLWNIEGEVKLVAKYKGHKRS----RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL 480
+W+ KLV Y H F +S +A+GS D + +W +
Sbjct: 689 KIWD-SATGKLVHTYDEHSEQVNCCHFTNKS-----NHLLLATGSNDFFLKLWDLNQKEC 742
Query: 481 IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL------KDLNVKR 525
+ GH+ +VN ++P + +LAS S D T+R+W + K +NVKR
Sbjct: 743 RNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKR 792
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN------GGVTLKHKLSGHQK 277
L L+GH V FS +G LA+ ++ IW V ++++ + H
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1186
Query: 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329
V+ V +S D + L++ G ++ W+V++G+ + G L PD
Sbjct: 1187 WVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1236
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 142/322 (44%), Gaps = 25/322 (7%)
Query: 215 GRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG 274
+ I + + +++ HTD V+ FS +G+ +AS D++ +++ + + ++
Sbjct: 605 NKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLL---EIKA 661
Query: 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIF 334
H+ V C ++S+DD+ + TC V++ V+ W+ +G +H Y++ + C + +
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL 721
Query: 335 --SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK 392
+G++D + +W+L KE T ++ + D K + + + L L D +
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 393 VERY----------IEEDQ-----TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVA 437
ER +E+ Q + S S D ++V N+ I L++I L
Sbjct: 782 NERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGE 840
Query: 438 KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN 497
+ GH + I+ C + V +W+ S + GH V+ V ++
Sbjct: 841 IHTGHHST---IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFS 897
Query: 498 PANPHMLASASDDRTIRIWGLK 519
P L S SDD+TIR+W K
Sbjct: 898 PDGSSFLTS-SDDQTIRLWETK 918
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 130/302 (43%), Gaps = 31/302 (10%)
Query: 228 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWE---VDLNGGVTLKHKLSGHQKPVSCVSW 284
+GH V + FS +G +SS+D++ +WE V N V LK ++ V +
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVD--------VVF 936
Query: 285 SSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICM 344
++ +L + +RR + +G + + C P ++I G + +I +
Sbjct: 937 QENEVMVLAV---DHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEI 993
Query: 345 WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ-TI 403
EL + + Q + ++ T+D K +I+ ++ + + + + ++ Q T+
Sbjct: 994 LELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETV 1053
Query: 404 TSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV-----IRSCFGGLEQ 458
F L ++++ L W+ +G VK+ G+K FV + SC +
Sbjct: 1054 KDFRLLKNSRLLS----------WSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDA 1103
Query: 459 AFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
+S S D IW + L GH+G V C +++ + +LA+ D+ IRIW +
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIWNV 1162
Query: 519 KD 520
+
Sbjct: 1163 SN 1164
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ 289
H V SH+ +S+S D++A IW DL + H+L GH V C ++S D
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDL---LLPLHELRGHNGCVRCSAFSVDST 1146
Query: 290 QLLTCGVEEAVRRWDVSSGNCLHV 313
L T +R W+VS+G LH+
Sbjct: 1147 LLATGDDNGEIRIWNVSNGELLHL 1170
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 369 TSDGKQIITMCKESALLLLDREAKVERYIE----EDQTITSFSLSRDNKFLLVNLLNQEI 424
+ DG++I + + L + E E+ +E ED+ + + S D++F+ +++++
Sbjct: 630 SEDGQRIASCGADKTLQVFKAETG-EKLLEIKAHEDEVLCC-AFSTDDRFIATCSVDKKV 687
Query: 425 HLWN-IEGEVKLVAKYKGHKRSRFVIRSCF--GGLEQAFIASGSEDSQVYIWHRASCDLI 481
+WN + GE LV Y H + C +A+GS D + +W +
Sbjct: 688 KIWNSMTGE--LVHTYDEHSEQ---VNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 482 GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525
+ GH+ +VN ++P + +LAS S D T+++W N ++
Sbjct: 743 NTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWDATSANERK 785
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
+ +R Q H VW +QF+ + K L SSS+D +W L+ + L+ GHQ+
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR----GHQET 1052
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338
V + +LL+ + V+ W++ +GN + ++SC D S +
Sbjct: 1053 VKDFRLLK-NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSA 1111
Query: 339 DKSICMWEL 347
DK+ +W
Sbjct: 1112 DKTAKIWSF 1120
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 143/312 (45%), Gaps = 27/312 (8%)
Query: 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS 285
+++ HTD V+ FS +G+ +AS D++ +++ + + + H+ V C ++S
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFS 666
Query: 286 SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGW--HPDRKWIFSGANDKSIC 343
SDD + TC ++ V+ WD ++G +H Y++ + C + + + +G+ND +
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD-------REAKVERY 396
+W+L KE T ++ + D + + + + L L D + V+R+
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
Query: 397 I--EEDQ------TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV 448
ED + S S D ++V N+ + L++I L + GH +
Sbjct: 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHST--- 842
Query: 449 IRSC-FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507
I+ C F + + + S+ V +W+ S + GH V+ V ++P L +A
Sbjct: 843 IQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TA 900
Query: 508 SDDRTIRIWGLK 519
SDD+TIR+W K
Sbjct: 901 SDDQTIRVWETK 912
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 127/302 (42%), Gaps = 31/302 (10%)
Query: 228 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWE---VDLNGGVTLKHKLSGHQKPVSCVSW 284
+GH V + FS +G ++S+D++ +WE V N + LK ++ V +
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID--------VVF 930
Query: 285 SSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICM 344
++ +L + +R + +G + + C P +++ G D +I +
Sbjct: 931 QENETMVLAV---DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 987
Query: 345 WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ-TI 403
EL + + ++ T+DGK +I+ ++S + + + + +++ Q T+
Sbjct: 988 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV 1047
Query: 404 TSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV-----IRSCFGGLEQ 458
F L +D++ L W+ +G VK+ G F + SC +
Sbjct: 1048 KDFRLLQDSRLLS----------WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1097
Query: 459 AFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
+S S D IW + L GH+G V C +++ + +LA+ D+ IRIW +
Sbjct: 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNV 1156
Query: 519 KD 520
D
Sbjct: 1157 SD 1158
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
I R + H V S + +S+S D++A IW DL ++ H+L GH
Sbjct: 1073 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL---LSPLHELKGHNGC 1129
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH 312
V C ++S D L T +R W+VS G LH
Sbjct: 1130 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 23/171 (13%)
Query: 369 TSDGKQIITMCKESALLLLDREAKVERYIE----EDQTITSFSLSRDNKFLLVNLLNQEI 424
+ DG++I + + L + E E+ ++ ED+ + + S D+ ++ ++++
Sbjct: 624 SQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCC-AFSSDDSYIATCSADKKV 681
Query: 425 HLWNIEGEVKLVAKYKGHKRS----RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL 480
+W+ KLV Y H F +S +A+GS D + +W +
Sbjct: 682 KIWD-SATGKLVHTYDEHSEQVNCCHFTNKS-----NHLLLATGSNDFFLKLWDLNQKEC 735
Query: 481 IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL------KDLNVKR 525
+ GH+ +VN ++P + +LAS S D T+R+W + K +NVKR
Sbjct: 736 RNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKR 785
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN------GGVTLKHKLSGHQK 277
L L+GH V FS +G LA+ ++ IW V ++++ + H
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179
Query: 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329
V+ V +S D + L++ G ++ W+V++G+ + G L PD
Sbjct: 1180 WVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1229
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 141/310 (45%), Gaps = 40/310 (12%)
Query: 222 RTLQILQGHTDEVWF-LQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLK--HKLSGHQKP 278
++ ++L+GH D V LQF G + S S+D + +W VT K L GH
Sbjct: 109 KSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWS-----AVTGKCLRTLVGHTGG 161
Query: 279 VSCVSWSSD--DQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSG 336
V WSS D +++ + ++ W+ +G C+H V C H K + SG
Sbjct: 162 V----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRC-MHLHEKRVVSG 215
Query: 337 ANDKSICMWEL-GGKELECWKGQRTLKISDLE-VTSDGKQIITMCKESALLLLDREAKVE 394
+ D ++ +W++ G+ L G ++ + V DG+++++ + + + D E +
Sbjct: 216 SRDATLRVWDIETGQCLHVLMGH----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 271
Query: 395 RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG 454
+ + T +SL D ++ L+ I +W++E + GH+ S
Sbjct: 272 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQ-------SLTS 323
Query: 455 GLE--QAFIASGSEDSQVYIWHRASCDLIGALPG---HSGAVNCVSWNPANPHMLASASD 509
G+E + SG+ DS V IW + + L G H AV C+ +N + + ++SD
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSD 380
Query: 510 DRTIRIWGLK 519
D T+++W LK
Sbjct: 381 DGTVKLWDLK 390
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 141/337 (41%), Gaps = 54/337 (16%)
Query: 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP----------- 278
HT V ++FS++G+YLA+ N + + D + L + ++ P
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 279 ---VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFS 335
+ V +S D + L T + +R WD+ + + + + + S + P + S
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 336 GANDKSICMWELGGKELECWKGQRTLKISDLEVT-----SDGKQIITMCKESALLLLDRE 390
G+ D+++ +W+L + +C TL I D T DGK I + A+ + D E
Sbjct: 183 GSGDRTVRIWDL--RTGQC---SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 391 AK--VERYIEEDQ-------TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLV----- 436
VER E++ ++ S +RD + ++ L++ + LWN++
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 437 ------AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGA 490
Y GHK FV+ S +I SGS+D V W + S + + L GH +
Sbjct: 298 NSGTCEVTYIGHK--DFVL-SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354
Query: 491 V------NCVSWNPANPHMLASASDDRTIRIWGLKDL 521
V N S P ++ A+ S D RIW K +
Sbjct: 355 VISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKKI 390
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 114/263 (43%), Gaps = 44/263 (16%)
Query: 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC 281
+ + ILQGH +++ L + +G L S S DR+ IW++ G +L + + V+
Sbjct: 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL-RTGQCSLTLSI---EDGVTT 211
Query: 282 VSWSSDDQQLLTCG-VEEAVRRWDVSSG---NCLHVYEKAGLG----LVSCGWHPDRKWI 333
V+ S D + + G ++ AVR WD +G L ++G G + S + D + +
Sbjct: 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 271
Query: 334 FSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV 393
SG+ D+S+ +W L Q SD + + G +T
Sbjct: 272 VSGSLDRSVKLWNL----------QNANNKSDSKTPNSGTCEVT---------------- 305
Query: 394 ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
YI + S + +++++++L ++ + W+ + L+ +GH+ S +
Sbjct: 306 --YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM-LQGHRNSVISVAVAN 362
Query: 454 G---GLEQAFIASGSEDSQVYIW 473
G G E A+GS D + IW
Sbjct: 363 GSSLGPEYNVFATGSGDCKARIW 385
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 74/209 (35%), Gaps = 48/209 (22%)
Query: 362 KISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN 421
K + + SDG + + +SA D I S S D KFL +
Sbjct: 85 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144
Query: 422 QEIHLWNIEGEVKLVAKYKGHKRSRF---------------------------------- 447
+ I +W+IE K+V +GH++ +
Sbjct: 145 RLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 448 -----VIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL-------PGHSGAVNCVS 495
V + +IA+GS D V +W + L+ L GH +V V
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263
Query: 496 WNPANPHMLASASDDRTIRIWGLKDLNVK 524
+ + + S S DR++++W L++ N K
Sbjct: 264 FT-RDGQSVVSGSLDRSVKLWNLQNANNK 291
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 11/197 (5%)
Query: 333 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLL 387
I S + DKSI +W+L + QR L + D+ ++SDG+ ++ + L L
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 388 DREAKVE--RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY--KGHK 443
D A V R++ + + S + S DN+ ++ ++ I LWN GE K +GH+
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 444 RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHM 503
+R L Q I S S D V +W+ ++C L L GH+G V+ V+ +P + +
Sbjct: 518 DWVSCVRFSPNTL-QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSL 575
Query: 504 LASASDDRTIRIWGLKD 520
AS D + +W L +
Sbjct: 576 CASGGKDGVVLLWDLAE 592
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 12/237 (5%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 260
S+ RD S+ D+ + L GH+ V + S +G++ S S D +W
Sbjct: 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW-- 457
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320
DL GV+ + + GH K V V++S D++Q+++ + ++ W+ + G C + + G G
Sbjct: 458 DLAAGVSTR-RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEG 515
Query: 321 ---LVSC-GWHPD--RKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374
VSC + P+ + I S + DK++ +W L +L T +S + V+ DG
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575
Query: 375 IITMCKESALLLLD-REAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430
+ K+ +LL D E K +E + I + S N++ L I +W++E
Sbjct: 576 CASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS-PNRYWLCAATEHGIKIWDLE 631
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 176 IPERRL---EHLVEQALVLQREACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTD 232
+ +RRL H VE ++ S D ++ L+ D + + GHT
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW-------DLAAGVSTRRFVGHTK 473
Query: 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQ-- 290
+V + FS + + + S+S DR+ +W T+ GH+ VSCV +S + Q
Sbjct: 474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533
Query: 291 LLTCGVEEAVRRWDVSSGNCLHVYEKAG-LGLVSC-GWHPDRKWIFSGANDKSICMWELG 348
+++ ++ V+ W++S NC AG G VS PD SG D + +W+L
Sbjct: 534 IVSASWDKTVKVWNLS--NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Query: 349 -GKEL 352
GK+L
Sbjct: 592 EGKKL 596
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 24/141 (17%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286
L GHT V + S +G AS D ++W DL G L + C S
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW--DLAEGKKLYSLEANSVIHALCFS--- 611
Query: 287 DDQQLLTCGVEEAVRRWDVSSGNCLH-------------------VYEKAGLGLVSCGWH 327
++ L E ++ WD+ S + + ++ + S W
Sbjct: 612 PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671
Query: 328 PDRKWIFSGANDKSICMWELG 348
D +FSG D I +W +G
Sbjct: 672 ADGSTLFSGYTDGVIRVWGIG 692
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 328 PDRKWIFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKES 382
PD I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ +
Sbjct: 51 PDM--ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 383 ALLLLD--REAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK 440
L L D R++ + + S + S DN+ ++ ++ I LWN G K + +
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168
Query: 441 GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPAN 500
H +R I S D V +W+ A+C L GH+G +N V+ +P +
Sbjct: 169 SHSEWVSCVRFSPNS-SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-D 226
Query: 501 PHMLASASDDRTIRIWGLKD 520
+ AS D +W L +
Sbjct: 227 GSLCASGGKDGQAMLWDLNE 246
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 35/231 (15%)
Query: 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
IP R L+ GH+ V + S +G++ S S D + +W DL G T + + GH K
Sbjct: 77 IPQRALR---GHSHFVSDVVISSDGQFALSGSWDGTLRLW--DLTTGTTTR-RFVGHTKD 130
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE----------------KAGLGLV 322
V V++SSD++Q+++ ++ ++ W+ + G C + + + +V
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 323 SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES 382
SCGW DK + +W L +L+ T ++ + V+ DG + K+
Sbjct: 190 SCGW------------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 383 ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV 433
+L D Y + I + N++ L I +W++EG++
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKI 288
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 121/299 (40%), Gaps = 53/299 (17%)
Query: 227 LQGHTDEVWFLQFSHNGKY---LASSSNDRSAIIWEV---DLNGGVTLKHKLSGHQKPVS 280
L+GH W Q + ++ + S+S D++ I+W++ + N G+ + L GH VS
Sbjct: 34 LKGHNG--WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-QRALRGHSHFVS 90
Query: 281 CVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340
V SSD Q L+ + +R WD+++G + ++S + D + I SG+ DK
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 341 SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEED 400
+I +W TL + V + C
Sbjct: 151 TIKLWN-------------TLGVCKYTVQDESHSEWVSC--------------------- 176
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
FS + N ++ ++ + +WN+ KL + GH + G +
Sbjct: 177 ---VRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDG---SL 229
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
ASG +D Q +W + L G +N + ++P N + L +A+ +I+IW L+
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP-NRYWLCAATGP-SIKIWDLE 285
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 55/284 (19%)
Query: 176 IPERRL---EHLVEQALVLQREACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTD 232
IP+R L H V ++ S D + L+ D T + GHT
Sbjct: 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW-------DLTTGTTTRRFVGHTK 129
Query: 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS--SDDQQ 290
+V + FS + + + S S D++ +W T++ + H + VSCV +S S +
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE--SHSEWVSCVRFSPNSSNPI 187
Query: 291 LLTCGVEEAVRRWDVSSGNCL----HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346
+++CG ++ V+ W+++ NC H+ L V+ PD SG D +W+
Sbjct: 188 IVSCGWDKLVKVWNLA--NCKLKTNHIGHTGYLNTVTV--SPDGSLCASGGKDGQAMLWD 243
Query: 347 LG-GKELE-----------CWKGQR---------TLKISDLEVTSDGKQIITMCKESALL 385
L GK L C+ R ++KI DLE GK I+ K+ +
Sbjct: 244 LNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE----GKIIVDELKQEVIS 299
Query: 386 LLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429
+ E TS + S D + L + + +W +
Sbjct: 300 TSSK--------AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
L G L GH+G V ++ P P M+ SAS D+TI +W L
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL 68
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 237 LQFSHNGKYLASSSNDRSAIIWEVDLNGGVT---LKHKL---SGHQKPVSCVS--WSSDD 288
L FS N +Y ++ S IW DL G + LK ++ S +P C S WS+D
Sbjct: 262 LCFSPN-RYWLCAATGPSIKIW--DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318
Query: 289 QQLLTCGVEEAVRRWDVSSGN 309
Q L + VR W V+ G
Sbjct: 319 QTLFAGYTDNLVRVWQVTIGT 339
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 328 PDRKWIFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKES 382
PD I S + DK+I MW+L E QR L+ +SD+ ++SDG+ ++ +
Sbjct: 28 PDM--ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 383 ALLLLD--REAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK 440
L L D R++ + + S + S DN+ ++ ++ I LWN G K + +
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 145
Query: 441 GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPAN 500
H +R I S D V +W+ A+C L GH+G +N V+ +P +
Sbjct: 146 SHSEWVSCVRFSPNS-SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-D 203
Query: 501 PHMLASASDDRTIRIWGLKD 520
+ AS D +W L +
Sbjct: 204 GSLCASGGKDGQAMLWDLNE 223
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 35/231 (15%)
Query: 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
IP R L+ GH+ V + S +G++ S S D + +W DL G T + + GH K
Sbjct: 54 IPQRALR---GHSHFVSDVVISSDGQFALSGSWDGTLRLW--DLTTGTTTR-RFVGHTKD 107
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE----------------KAGLGLV 322
V V++SSD++Q+++ ++ ++ W+ + G C + + + +V
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Query: 323 SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES 382
SCGW DK + +W L +L+ T ++ + V+ DG + K+
Sbjct: 167 SCGW------------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 383 ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV 433
+L D Y + I + N++ L I +W++EG++
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKI 265
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 121/299 (40%), Gaps = 53/299 (17%)
Query: 227 LQGHTDEVWFLQFSHNGKY---LASSSNDRSAIIWEV---DLNGGVTLKHKLSGHQKPVS 280
L+GH W Q + ++ + S+S D++ I+W++ + N G+ + L GH VS
Sbjct: 11 LKGHNG--WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-QRALRGHSHFVS 67
Query: 281 CVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340
V SSD Q L+ + +R WD+++G + ++S + D + I SG+ DK
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 341 SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEED 400
+I +W TL + V + C
Sbjct: 128 TIKLWN-------------TLGVCKYTVQDESHSEWVSC--------------------- 153
Query: 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460
FS + N ++ ++ + +WN+ KL + GH + G +
Sbjct: 154 ---VRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDG---SL 206
Query: 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
ASG +D Q +W + L G +N + ++P N + L +A+ +I+IW L+
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP-NRYWLCAATGP-SIKIWDLE 262
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 55/284 (19%)
Query: 176 IPERRL---EHLVEQALVLQREACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTD 232
IP+R L H V ++ S D + L+ D T + GHT
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW-------DLTTGTTTRRFVGHTK 106
Query: 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS--SDDQQ 290
+V + FS + + + S S D++ +W T++ + H + VSCV +S S +
Sbjct: 107 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE--SHSEWVSCVRFSPNSSNPI 164
Query: 291 LLTCGVEEAVRRWDVSSGNCL----HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346
+++CG ++ V+ W+++ NC H+ L V+ PD SG D +W+
Sbjct: 165 IVSCGWDKLVKVWNLA--NCKLKTNHIGHTGYLNTVTVS--PDGSLCASGGKDGQAMLWD 220
Query: 347 LG-GKELE-----------CWKGQR---------TLKISDLEVTSDGKQIITMCKESALL 385
L GK L C+ R ++KI DLE GK I+ K+ +
Sbjct: 221 LNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE----GKIIVDELKQEVIS 276
Query: 386 LLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429
+ E TS + S D + L + + +W +
Sbjct: 277 TSSK--------AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
L G L GH+G V ++ P P M+ SAS D+TI +W L
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL 45
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 237 LQFSHNGKYLASSSNDRSAIIWEVDLNGGVT---LKHKL---SGHQKPVSCVS--WSSDD 288
L FS N +Y ++ S IW DL G + LK ++ S +P C S WS+D
Sbjct: 239 LCFSPN-RYWLCAATGPSIKIW--DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 295
Query: 289 QQLLTCGVEEAVRRWDVSSGN 309
Q L + VR W V+ G
Sbjct: 296 QTLFAGYTDNLVRVWQVTIGT 316
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 125/340 (36%), Gaps = 69/340 (20%)
Query: 227 LQGHTDE-VWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS 285
+ H D WFL ++ G LAS DR IW + + + GHQ+ V V+WS
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 286 SDDQQLLTCGVEEAVRRWDVSSGN--CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
L + + W + + C+ E + S W P + + + DKS+
Sbjct: 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130
Query: 344 MWELGGK-ELECWKGQRTLKISDLEV-TSDGKQIITMCKESALLLLDREAKVERYIEEDQ 401
+WE+ + E EC +S L T D K ++ + L + V+ Y EE+
Sbjct: 131 VWEVDEEDEYEC--------VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE- 181
Query: 402 TITSFSLSRDNKFLLVNLLNQEIHLWNI--EGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459
D+ L E +W++ + + +A + R + R G EQ
Sbjct: 182 ---------DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR-IWRQYLPGNEQG 231
Query: 460 FIASGSEDS-----------QVYIWHRASCDLIGALP----------------------- 485
SGS+ S I+ A C L GAL
Sbjct: 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT 291
Query: 486 ---------GHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
HS VNCV+WNP P +LAS SDD + W
Sbjct: 292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC 281
L+GH VW L F +G+ LAS S+DR+ IW + L G+++ V+C
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW----------RQYLPGNEQGVAC 234
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 480 LIGALPGHSGAVNC--VSWNPANPHMLASASDDRTIRIWGLK 519
L+G +P H + C ++WNPA +LAS DR IRIWG +
Sbjct: 7 LLGRVPAHPDS-RCWFLAWNPAGT-LLASCGGDRRIRIWGTE 46
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 36/298 (12%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286
L GH V + F + S+S D + +W+ + + L GH V +S+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDH 160
Query: 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346
+ L +C + ++ WD C+ + S P+ I S + DK+I MWE
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 347 L-GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL---LLLDREAKVERYIEEDQT 402
+ G ++ + G R + + DG I + + + ++ +E K E
Sbjct: 221 VQTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL------- 272
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462
R+++ ++ E W E +++ G + + G F+
Sbjct: 273 -------REHRHVV------ECISWAPESSYSSISEATGSETKK-------SGKPGPFLL 312
Query: 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
SGS D + +W ++ + L GH V V ++ +L S +DD+T+R+W K+
Sbjct: 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKN 369
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 37/232 (15%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
++ + GH V + NG ++ S+S D++ +WEV G +K +GH++ V V
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--QTGYCVK-TFTGHREWVRMVR 241
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGL----GLVSC-GWHPDRKW------ 332
+ D + +C ++ VR W V++ C KA L +V C W P+ +
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKEC-----KAELREHRHVVECISWAPESSYSSISEA 296
Query: 333 --------------IFSGANDKSICMWELG-GKELECWKGQRTLKISDLEVTSDGKQIIT 377
+ SG+ DK+I MW++ G L G + + S GK I++
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGGKFILS 355
Query: 378 MCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLW 427
+ L + D + K ++ + +TS + +++ ++Q + +W
Sbjct: 356 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302
G +L S S D++ +W D++ G+ L L GH V V + S + +L+C ++ +R
Sbjct: 308 GPFLLSGSRDKTIKMW--DVSTGMCLM-TLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 303 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346
WD + C+ + S +H ++ +G+ D+++ +WE
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 133/337 (39%), Gaps = 55/337 (16%)
Query: 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEV----------------------------- 260
H+ V+ L +S +G +AS+S D++ IW V
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 261 ---DLNGGV--------TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309
NG + ++ GH K ++ +S S+D + L + E + WD+S+G
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISD---- 365
V+ +++ + +F+ + D + + GG ++ K K+S
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN-KLSSQPLG 416
Query: 366 LEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIH 425
L V++DG + C + + + E I + + +LS D +F+ V + ++H
Sbjct: 417 LAVSADGDIAVAACYKH-IAIYSHGKLTEVPISYNSSCV--ALSNDKQFVAVGGQDSKVH 473
Query: 426 LWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS---CDLIG 482
++ + G K H I S AF+ + + +V + A+
Sbjct: 474 VYKLSGASVSEVKTIVHPAE---ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+ H+ V CVSW+P N LA+ S D ++ +W +
Sbjct: 531 SWTFHTAKVACVSWSPDNVR-LATGSLDNSVIVWNMN 566
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ 289
H E+ + FS+NG +L ++ R I + V N + + + H V+CVSWS D+
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 290 QLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCG---WHPDRKWIFSGANDKSICMWE 346
+L T ++ +V W+++ + + K + S W + I S D +I W
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWN 608
Query: 347 L 347
+
Sbjct: 609 V 609
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 89/223 (39%), Gaps = 25/223 (11%)
Query: 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSW 284
+I H+ + + S +G Y AS + IW+ + LK + PV +SW
Sbjct: 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISW 111
Query: 285 SSDDQQLLTCGVEEAVRRW--------DVSSGNCLHVYEKAGLGLVSCGWHPDRKW-IFS 335
S+ +++ G E R+ S+GN + S + P R + I S
Sbjct: 112 DSESKRIAAVG--EGRERFGHVFLFDTGTSNGNL----TGQARAMNSVDFKPSRPFRIIS 165
Query: 336 GANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVER 395
G++D ++ ++E + + G+ T + + DG + + ++L + +
Sbjct: 166 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225
Query: 396 YIEEDQTITS-------FSL--SRDNKFLLVNLLNQEIHLWNI 429
+ ED ++ + F L S D + ++ I +WN+
Sbjct: 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 487 HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525
HSG+V ++W+P + +ASAS D+TI+IW + L V++
Sbjct: 238 HSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEK 275
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 21/199 (10%)
Query: 246 LASSSNDRSAIIWEVDLNGGVTLKHK--LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303
+ S S+D + I+E G K K H K V V ++ D + G + + +
Sbjct: 163 IISGSDDNTVAIFE-----GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 304 DVSSGNCLHVYEKAGLGLVS-------CGWHPDRKWIFSGANDKSICMWELGGKELE--C 354
+ G V+E L V+ W PD I S + DK+I +W + ++E
Sbjct: 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 355 WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDRE-AKVE--RYIEEDQTITSFSLSRD 411
G R ++ L + + ++++ + ++ E ++ RY ++ IT+ S S D
Sbjct: 278 PVGTR-IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY-GHNKAITALSSSAD 335
Query: 412 NKFLLVNLLNQEIHLWNIE 430
K L I+ W+I
Sbjct: 336 GKTLFSADAEGHINSWDIS 354
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 482 GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
G L G + A+N V + P+ P + S SDD T+ I+
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 321 LVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380
L+S G +PDR S C + L + LE + +SD+ ++++G ++
Sbjct: 40 LLSWGPNPDRH--------SSECSYGLPDRRLE----GHSAFVSDVALSNNGNFAVSASW 87
Query: 381 ESALLLLDREAKVERY--IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAK 438
+ +L L + + +Y + + + S + S DN+ ++ + + +WN++GE
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLS 147
Query: 439 YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNP 498
H +R L+ I SG D+ V +W A+ L+ L GH+ V V+ +P
Sbjct: 148 RGAHTDWVSCVRFS-PSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
Query: 499 ANPHMLASASDDRTIRIWGL 518
+ + AS+ D R+W L
Sbjct: 207 -DGSLCASSDKDGVARLWDL 225
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 112/262 (42%), Gaps = 19/262 (7%)
Query: 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR 330
+L GH VS V+ S++ ++ + ++R W++ +G C + + ++S + PD
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 331 KWIFSGANDKSICMWELGGKELECW-KGQRTLKISDLEVTS--DGKQIITMCKESALLLL 387
+ I SG D ++ +W + G+ + +G T +S + + D I++ ++ + +
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 388 DREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS 445
D V +TS ++S D + + LW++ L G +
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
Query: 446 RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL-PGHSGA----VNCVS--WNP 498
+ CF + + + + I+ + D+I L P H G+ CVS W+
Sbjct: 242 QI----CFS--PNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWS- 294
Query: 499 ANPHMLASASDDRTIRIWGLKD 520
A+ L S D IR+WG+ +
Sbjct: 295 ADGSTLYSGYTDNVIRVWGVSE 316
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 217 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276
D R + L+GHT+ V + S +G ASS D A +W DL G L +G
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW--DLTKGEALSEMAAG-- 237
Query: 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG-------LVSCGWHPD 329
P++ + +S ++ + E+ +R +D+ + + + G VS W D
Sbjct: 238 APINQICFSP-NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSAD 296
Query: 330 RKWIFSGANDKSICMW 345
++SG D I +W
Sbjct: 297 GSTLYSGYTDNVIRVW 312
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 132/318 (41%), Gaps = 41/318 (12%)
Query: 219 IPSRTLQILQGH-TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277
+P RT L+GH T + LQF N Y+ + ++D+ +++ +N L+ LSGH
Sbjct: 111 VPQRT--TLRGHMTSVITCLQFEDN--YVITGADDKMIRVYD-SINKKFLLQ--LSGHDG 163
Query: 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE--KAGLGLVSCGWHPDRKWIFS 335
V + ++ L++ + VR WD+ G C HV+E + + + + + K+I +
Sbjct: 164 GVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 336 GANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALL--LLDREAKV 393
G+ D + L WK + + D D + +E+ +L
Sbjct: 223 GSRDNT----------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 394 ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
R + I S S DN + +W++ ++K + GH I S
Sbjct: 273 VRTVSGHGNIV-VSGSYDNTLI----------VWDV-AQMKCLYILSGHTDR---IYSTI 317
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTI 513
E+ S S D+ + IW + +L+ L GH+ V + + L SA+ D +I
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR---LSDKFLVSAAADGSI 374
Query: 514 RIWGLKDLNVKRKDCHSN 531
R W D + K H+N
Sbjct: 375 RGWDANDYSRKFSYHHTN 392
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC 281
+ L IL GHTD ++ + H K S+S D + IW+++ NG L + L GH V
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-NG--ELMYTLQGHTALVGL 357
Query: 282 VSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKS 341
+ S D+ L++ + ++R WD + + Y L ++ + D + N +
Sbjct: 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFN 415
Query: 342 I 342
I
Sbjct: 416 I 416
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 385 LLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444
L L K + ++D+ SF +N F+L N N + V +GH
Sbjct: 74 LNLKLSQKYPKLSQQDRLRLSF---LENIFILKNWYNPKF--------VPQRTTLRGHMT 122
Query: 445 SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHML 504
S + +C E ++ +G++D + ++ + + L GH G V + + A+ +L
Sbjct: 123 S---VITCLQ-FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGIL 176
Query: 505 ASASDDRTIRIWGLK 519
S S DRT+R+W +K
Sbjct: 177 VSGSTDRTVRVWDIK 191
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 217 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276
D I + L L GH VW L+++H G L S S DR+ +W++ G T H GH
Sbjct: 148 DSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK-KGCCT--HVFEGHN 203
Query: 277 KPVSCV 282
V C+
Sbjct: 204 STVRCL 209
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIW-EVDLNGGVTLKHKLSGHQKPVSCV 282
+ L GH+ EV L+++ +G++LAS ND +W GG + HQ V V
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 283 SWSSDDQQLLTCG---VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND 339
+W +L G + +R W+V SG CL + A + S W P K + SG
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG- 340
Query: 340 KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALL 385
+L WK K+++L+ + +TM + A +
Sbjct: 341 -------FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 379
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 55/248 (22%)
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV--YEKAGLGLVSCGWHPDRKWIFSG 336
++ V WSS + +L ++ +V W SSG+ L + E+ G + S W + ++ G
Sbjct: 108 LNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG 165
Query: 337 ANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY 396
+ + +W++ K++ M SA +
Sbjct: 166 TSSAEVQLWDV----------------------QQQKRLRNMTSHSARV----------- 192
Query: 397 IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL 456
SLS ++ L + IH ++ VA GH + +R G
Sbjct: 193 ---------GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 457 EQAFIASGSEDSQVYIWHRASCD----LIGALPGHSGAVNCVSWNPANPHMLAS--ASDD 510
+ASG D+ V +W A + + H GAV V+W P ++LA+ + D
Sbjct: 244 H---LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300
Query: 511 RTIRIWGL 518
R IRIW +
Sbjct: 301 RHIRIWNV 308
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 107/287 (37%), Gaps = 47/287 (16%)
Query: 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA-VR 301
G YLA ++ +W+V + ++ H V +SW+S +L+ G +
Sbjct: 159 GNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSWNS---YILSSGSRSGHIH 212
Query: 302 RWDVSSGNCLHVYEKAGLGLVSCG--WHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359
DV HV +G CG W PD + + SG ND + +W E W +
Sbjct: 213 HHDVRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQ 270
Query: 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNL 419
T V + + C + +L +R+I
Sbjct: 271 TFTQHQGAV-----KAVAWCPWQSNVLATGGGTSDRHIR--------------------- 304
Query: 420 LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
+WN+ L A H + ++ S ++ G +Q+ IW +
Sbjct: 305 ------IWNVCSGACLSA-VDAHSQVCSILWSPH--YKELISGHGFAQNQLVIWKYPTMA 355
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526
+ L GH+ V ++ +P + +ASA+ D T+R+W +L+ R+
Sbjct: 356 KVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELDPARR 401
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIW-EVDLNGGVTLKHKLSGHQKPVSCV 282
+ L GH+ EV L+++ +G++LAS ND +W GG + HQ V V
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 283 SWSSDDQQLLTCG---VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND 339
+W +L G + +R W+V SG CL + A + S W P K + SG
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG- 351
Query: 340 KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALL 385
+L WK K+++L+ + +TM + A +
Sbjct: 352 -------FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 390
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 55/248 (22%)
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV--YEKAGLGLVSCGWHPDRKWIFSG 336
++ V WSS + +L ++ +V W SSG+ L + E+ G + S W + ++ G
Sbjct: 119 LNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG 176
Query: 337 ANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY 396
+ + +W++ K++ M SA +
Sbjct: 177 TSSAEVQLWDV----------------------QQQKRLRNMTSHSARV----------- 203
Query: 397 IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL 456
SLS ++ L + IH ++ VA GH + +R G
Sbjct: 204 ---------GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 254
Query: 457 EQAFIASGSEDSQVYIWHRASCD----LIGALPGHSGAVNCVSWNPANPHMLAS--ASDD 510
+ASG D+ V +W A + + H GAV V+W P ++LA+ + D
Sbjct: 255 H---LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 311
Query: 511 RTIRIWGL 518
R IRIW +
Sbjct: 312 RHIRIWNV 319
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 107/287 (37%), Gaps = 47/287 (16%)
Query: 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA-VR 301
G YLA ++ +W+V + ++ H V +SW+S +L+ G +
Sbjct: 170 GNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSWNS---YILSSGSRSGHIH 223
Query: 302 RWDVSSGNCLHVYEKAGLGLVSCG--WHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359
DV HV +G CG W PD + + SG ND + +W E W +
Sbjct: 224 HHDVRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQ 281
Query: 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNL 419
T V + + C + +L +R+I
Sbjct: 282 TFTQHQGAV-----KAVAWCPWQSNVLATGGGTSDRHIR--------------------- 315
Query: 420 LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
+WN+ L A H + ++ S ++ G +Q+ IW +
Sbjct: 316 ------IWNVCSGACLSA-VDAHSQVCSILWSPH--YKELISGHGFAQNQLVIWKYPTMA 366
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526
+ L GH+ V ++ +P + +ASA+ D T+R+W +L+ R+
Sbjct: 367 KVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELDPARR 412
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIW-EVDLNGGVTLKHKLSGHQKPVSCV 282
+ L GH+ EV L+++ +G++LAS ND +W GG + HQ V V
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 283 SWSSDDQQLLTCG---VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND 339
+W +L G + +R W+V SG CL + A + S W P K + SG
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG- 260
Query: 340 KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALL 385
+L WK K+++L+ + +TM + A +
Sbjct: 261 -------FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 299
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 55/245 (22%)
Query: 282 VSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV--YEKAGLGLVSCGWHPDRKWIFSGAND 339
V WSS + +L ++ +V W SSG+ L + E+ G + S W + ++ G +
Sbjct: 31 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88
Query: 340 KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEE 399
+ +W++ + K++ M SA +
Sbjct: 89 AEVQLWDVQQQ----------------------KRLRNMTSHSARV-------------- 112
Query: 400 DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459
SLS ++ L + IH ++ VA GH + +R G
Sbjct: 113 ------GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-- 164
Query: 460 FIASGSEDSQVYIWHRASCD----LIGALPGHSGAVNCVSWNPANPHMLAS--ASDDRTI 513
+ASG D+ V +W A + + H GAV V+W P ++LA+ + DR I
Sbjct: 165 -LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 514 RIWGL 518
RIW +
Sbjct: 224 RIWNV 228
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 105/283 (37%), Gaps = 47/283 (16%)
Query: 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA-VR 301
G YLA ++ +W+V + ++ H V +SW+S +L+ G +
Sbjct: 79 GNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSWNS---YILSSGSRSGHIH 132
Query: 302 RWDVSSGNCLHVYEKAGLGLVSCG--WHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359
DV HV +G CG W PD + + SG ND + +W E W +
Sbjct: 133 HHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQ 190
Query: 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNL 419
T V + + C + +L +R+I
Sbjct: 191 TFTQHQGAV-----KAVAWCPWQSNVLATGGGTSDRHIR--------------------- 224
Query: 420 LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
+WN+ L A H + ++ S ++ G +Q+ IW +
Sbjct: 225 ------IWNVCSGACLSA-VDAHSQVCSILWSPH--YKELISGHGFAQNQLVIWKYPTMA 275
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522
+ L GH+ V ++ +P + +ASA+ D T+R+W +L+
Sbjct: 276 KVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELD 317
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 132/318 (41%), Gaps = 41/318 (12%)
Query: 219 IPSRTLQILQGH-TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277
+P RT L+GH T + LQF N Y+ + ++D+ +++ +N L+ LSGH
Sbjct: 111 VPQRT--TLRGHXTSVITCLQFEDN--YVITGADDKXIRVYD-SINKKFLLQ--LSGHDG 163
Query: 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE--KAGLGLVSCGWHPDRKWIFS 335
V + ++ L++ + VR WD+ G C HV+E + + + + + K+I +
Sbjct: 164 GVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 336 GANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALL--LLDREAKV 393
G+ D ++ +W+L + + D D + +E+ +L
Sbjct: 223 GSRDNTLHVWKL----------PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 394 ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
R + I S S DN + +W++ + K + GH I S
Sbjct: 273 VRTVSGHGNIV-VSGSYDNTLI----------VWDV-AQXKCLYILSGHTDR---IYSTI 317
Query: 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTI 513
E+ S S D+ + IW + +L L GH+ V + + L SA+ D +I
Sbjct: 318 YDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLR---LSDKFLVSAAADGSI 374
Query: 514 RIWGLKDLNVKRKDCHSN 531
R W D + K H+N
Sbjct: 375 RGWDANDYSRKFSYHHTN 392
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 217 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276
D + L IL GHTD ++ + H K S+S D + IW+++ NG L + L GH
Sbjct: 296 DVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE-NG--ELXYTLQGHT 352
Query: 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSG 336
V + S D+ L++ + ++R WD + + Y L ++ + D +
Sbjct: 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 410
Query: 337 ANDKSI 342
N +I
Sbjct: 411 ENQFNI 416
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 385 LLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444
L L K + ++D+ SF +N F+L N N + V +GH
Sbjct: 74 LNLKLSQKYPKLSQQDRLRLSF---LENIFILKNWYNPKF--------VPQRTTLRGHXT 122
Query: 445 SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHML 504
S + +C E ++ +G++D + ++ + + L GH G V + + A+ +L
Sbjct: 123 S---VITCLQ-FEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGIL 176
Query: 505 ASASDDRTIRIWGLK 519
S S DRT+R+W +K
Sbjct: 177 VSGSTDRTVRVWDIK 191
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 217 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276
D I + L L GH VW L+++H G L S S DR+ +W++ G T H GH
Sbjct: 148 DSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK-KGCCT--HVFEGHN 203
Query: 277 KPVSCV 282
V C+
Sbjct: 204 STVRCL 209
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 17/202 (8%)
Query: 322 VSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381
V C + D+K I SG D +I +W+ LEC + S L + D + IIT +
Sbjct: 136 VYCLQYDDQK-IVSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQYDERVIITGSSD 192
Query: 382 SALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG--EVKLVA 437
S + + D + I + + L +N ++ ++ I +W++ ++ L
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 438 KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN 497
GH+ + V+ + +I S S D + +W+ ++C+ + L GH + C+ +
Sbjct: 251 VLVGHRAAVNVV-----DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY- 304
Query: 498 PANPHMLASASDDRTIRIWGLK 519
++ S S D TIR+W ++
Sbjct: 305 --RDRLVVSGSSDNTIRLWDIE 324
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
L L H + V L+F N + + S DRS +W++ +TL+ L GH+ V+ V
Sbjct: 206 LNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
+ DD+ +++ + ++ W+ S+ + G ++C + DR + SG++D +I
Sbjct: 264 F--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG-IACLQYRDR-LVVSGSSDNTIR 319
Query: 344 MWEL 347
+W++
Sbjct: 320 LWDI 323
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 111/252 (44%), Gaps = 18/252 (7%)
Query: 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329
H S K V C+ + DDQ++++ + ++ WD ++ C + G V C + D
Sbjct: 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY-D 182
Query: 330 RKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDR 389
+ I +G++D ++ +W++ E+ + L + + ++T K+ ++ + D
Sbjct: 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDM 240
Query: 390 EAKVE---RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSR 446
+ + R + + D+K+++ ++ I +WN + V GHKR
Sbjct: 241 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN-TSTCEFVRTLNGHKRGI 299
Query: 447 FVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLAS 506
++ + SGS D+ + +W + L GH V C+ ++ N +++
Sbjct: 300 ACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG 352
Query: 507 ASDDRTIRIWGL 518
A D + I++W L
Sbjct: 353 AYDGK-IKVWDL 363
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 125/331 (37%), Gaps = 61/331 (18%)
Query: 193 REACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSND 252
R+AC +D +S T++ +I RT + L+GH +++ + + + + L S+S D
Sbjct: 22 RKAC-----ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76
Query: 253 RSAIIWEVDLN-------------------------------------------GGVTLK 269
IIW+ G V +
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136
Query: 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329
+L+GH +SC + DD Q++T + WD+ +G + ++S PD
Sbjct: 137 RELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 330 RKWIFSGANDKSICMWEL-GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388
+ SGA D S +W++ G + + G + I+ + +G T ++ L D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFD 254
Query: 389 REAKVERYIEEDQT----ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444
A E ITS S S+ + LL + ++W+ + GH
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHDN 313
Query: 445 SRFVIRSCFGGLEQAF-IASGSEDSQVYIWH 474
SC G + +A+GS DS + IW+
Sbjct: 314 R----VSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 125/331 (37%), Gaps = 61/331 (18%)
Query: 193 REACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSND 252
R+AC +D +S T++ +I RT + L+GH +++ + + + + L S+S D
Sbjct: 33 RKAC-----ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 87
Query: 253 RSAIIWEVDLN-------------------------------------------GGVTLK 269
IIW+ G V +
Sbjct: 88 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 147
Query: 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329
+L+GH +SC + DD Q++T + WD+ +G + ++S PD
Sbjct: 148 RELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 206
Query: 330 RKWIFSGANDKSICMWELG-GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388
+ SGA D S +W++ G + + G + I+ + +G T ++ L D
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFD 265
Query: 389 REAKVERYIEEDQT----ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444
A E ITS S S+ + LL + ++W+ + GH
Sbjct: 266 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHDN 324
Query: 445 SRFVIRSCFGGLEQAF-IASGSEDSQVYIWH 474
SC G + +A+GS DS + IW+
Sbjct: 325 R----VSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 125/331 (37%), Gaps = 61/331 (18%)
Query: 193 REACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSND 252
R+AC +D +S T++ +I RT + L+GH +++ + + + + L S+S D
Sbjct: 22 RKAC-----ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76
Query: 253 RSAIIWEVDLN-------------------------------------------GGVTLK 269
IIW+ G V +
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136
Query: 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329
+L+GH +SC + DD Q++T + WD+ +G + ++S PD
Sbjct: 137 RELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 330 RKWIFSGANDKSICMWEL-GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388
+ SGA D S +W++ G + + G + I+ + +G T ++ L D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFD 254
Query: 389 REAKVERYIEEDQT----ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444
A E ITS S S+ + LL + ++W+ + GH
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHDN 313
Query: 445 SRFVIRSCFGGLEQAF-IASGSEDSQVYIWH 474
SC G + +A+GS DS + IW+
Sbjct: 314 R----VSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 125/331 (37%), Gaps = 61/331 (18%)
Query: 193 REACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSND 252
R+AC +D +S T++ +I RT + L+GH +++ + + + + L S+S D
Sbjct: 22 RKAC-----ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD 76
Query: 253 RSAIIWEVDLN-------------------------------------------GGVTLK 269
IIW+ G V +
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136
Query: 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329
+L+GH +SC + DD Q++T + WD+ +G + ++S PD
Sbjct: 137 RELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 330 RKWIFSGANDKSICMWEL-GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388
+ SGA D S +W++ G + + G + I+ + +G T ++ L D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFD 254
Query: 389 REAKVERYIEEDQT----ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444
A E ITS S S+ + LL + ++W+ + GH
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHDN 313
Query: 445 SRFVIRSCFGGLEQAF-IASGSEDSQVYIWH 474
SC G + +A+GS DS + IW+
Sbjct: 314 R----VSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 125/331 (37%), Gaps = 61/331 (18%)
Query: 193 REACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSND 252
R+AC +D +S T++ +I RT + L+GH +++ + + + + L S+S D
Sbjct: 22 RKAC-----ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD 76
Query: 253 RSAIIWEVDLN-------------------------------------------GGVTLK 269
IIW+ G V +
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136
Query: 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329
+L+GH +SC + DD Q++T + WD+ +G + ++S PD
Sbjct: 137 RELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 330 RKWIFSGANDKSICMWEL-GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388
+ SGA D S +W++ G + + G + I+ + +G T ++ L D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFD 254
Query: 389 REAKVERYIEEDQT----ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444
A E ITS S S+ + LL + ++W+ + GH
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHDN 313
Query: 445 SRFVIRSCFGGLEQAF-IASGSEDSQVYIWH 474
SC G + +A+GS DS + IW+
Sbjct: 314 R----VSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 19/216 (8%)
Query: 329 DRKWIFSGANDKSICMWELGGKELECWKG--QRTLK-----ISDLEVTSDGKQIITMCKE 381
D + SG+ DK++ +W+L +E + G + L +SDL ++ + I+ +
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 382 SALLLLDREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY 439
L L D +R++ + S + S DN+ +L +EI LWNI GE K +
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 440 KGHK-------RSRFVIRSCFGGLEQA-FIASGSEDSQVYIWHRASCDLIGALPGHSGAV 491
K + R +++S A + AS D ++ +W+ + + H V
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNV 216
Query: 492 NCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527
N +S +P N +A+ D+ + IW + +L +++
Sbjct: 217 NHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQRE 251
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 226 ILQGHTDEVWFL--QFSH----NGKYLASSSNDRSAIIW---EVDLNGGVTLKHK-LSGH 275
IL+GH+D V + FS + L S S D++ +IW E + NG + HK L+GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFS 335
VS ++ S ++ ++ ++ +R WD+ +G + + S + PD + I S
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 336 GANDKSICMWELGGK 350
++ I +W + G+
Sbjct: 136 AGAEREIKLWNILGE 150
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 65/196 (33%)
Query: 208 LYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT 267
LY + Q G IP + L GH V L S + SSS D++ +W DL G T
Sbjct: 56 LYEEEQNGYFGIPHKALT---GHNHFVSDLALSQENCFAISSSWDKTLRLW--DLRTGTT 110
Query: 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV---------------------- 305
K + GHQ V V++S D++Q+L+ G E ++ W++
Sbjct: 111 YK-RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169
Query: 306 -----SSGNCLHVYEKAGLGLVSCGW-----------------------------HPDRK 331
S N + + S GW P+ K
Sbjct: 170 YSPIMKSANKVQPFAPY---FASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGK 226
Query: 332 WIFSGANDKSICMWEL 347
+I +G DK + +W++
Sbjct: 227 YIATGGKDKKLLIWDI 242
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
Query: 358 QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE-RYIEEDQTITSFS--LSRDNKF 414
R+ ++ ++ ++T + L + E +VE R I+ +T ++R N +
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-W 69
Query: 415 LLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474
++V + I ++N K+V ++ H IRS + ++ SGS+D V +W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVV-DFEAHPD---YIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 475 -RASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL--KDLNVKRKDCHSN 531
+ L GH V CV++NP +P AS DRT+++W L N
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 532 GVHYCN 537
GV+Y +
Sbjct: 186 GVNYVD 191
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 40/226 (17%)
Query: 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359
+R ++ ++G + +E + S HP + ++ SG++D ++ +W W+
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--------WENNW 130
Query: 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNL 419
L E T +G + MC +F+ +D
Sbjct: 131 AL-----EQTFEGHEHFVMC------------------------VAFN-PKDPSTFASGC 160
Query: 420 LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
L++ + +W++ G +R + + ++ ++ + S+D + IW +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYV-DYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525
+ L GH V+ ++P P ++ S S+D T++IW V++
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEK 264
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286
+ H D + + Y+ S S+D + +W + N L+ GH+ V CV+++
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAFNP 150
Query: 287 DDQQLLTCG-VEEAVRRWDV--SSGN-CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSI 342
D G ++ V+ W + S+ N L ++ G+ V PD+ ++ + ++D +I
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 343 CMWELGGK 350
+W+ K
Sbjct: 211 KIWDYQTK 218
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 225 QILQGHTDEVWFLQFS-HNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS-GHQKPVSCV 282
Q +GH V + F+ + AS DR+ +W + G T L+ G ++ V+ V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 283 SWSS--DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340
+ D ++T + ++ WD + +C+ E + +HP I SG+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 341 SICMWELGGKELE 353
++ +W ++E
Sbjct: 251 TLKIWNSSTYKVE 263
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
Query: 358 QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE-RYIEEDQTITSFS--LSRDNKF 414
R+ ++ ++ ++T + L + E +VE R I+ +T ++R N +
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-W 69
Query: 415 LLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474
++V + I ++N K+V ++ H IRS + ++ SGS+D V +W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVV-DFEAHPD---YIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 475 -RASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL--KDLNVKRKDCHSN 531
+ L GH V CV++NP +P AS DRT+++W L N
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 532 GVHYCN 537
GV+Y +
Sbjct: 186 GVNYVD 191
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 40/226 (17%)
Query: 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359
+R ++ ++G + +E + S HP + ++ SG++D ++ +W W+
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--------WENNW 130
Query: 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNL 419
L E T +G + MC +F+ +D
Sbjct: 131 AL-----EQTFEGHEHFVMC------------------------VAFN-PKDPSTFASGC 160
Query: 420 LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
L++ + +W++ G +R + + ++ ++ + S+D + IW +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYV-DYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525
+ L GH V+ ++P P ++ S S+D T++IW V++
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEK 264
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286
+ H D + + Y+ S S+D + +W + N L+ GH+ V CV+++
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAFNP 150
Query: 287 DDQQLLTCG-VEEAVRRWDV--SSGN-CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSI 342
D G ++ V+ W + S+ N L ++ G+ V PD+ ++ + ++D +I
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 343 CMWELGGK 350
+W+ K
Sbjct: 211 KIWDYQTK 218
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 225 QILQGHTDEVWFLQFS-HNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS-GHQKPVSCV 282
Q +GH V + F+ + AS DR+ +W + G T L+ G ++ V+ V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 283 SWSS--DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340
+ D ++T + ++ WD + +C+ E + +HP I SG+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 341 SICMWELGGKELE 353
++ +W ++E
Sbjct: 251 TLKIWNSSTYKVE 263
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 222 RTLQILQGHTDEVWFLQF-SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHK-----LSGH 275
+ + ++ GHT V + + HN +AS S D + ++WE+ +GG+ L + L GH
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGH 130
Query: 276 QKPVSCVSWSSDDQQ-LLTCGVEEAVRRWDVSSGNCL 311
K V V+W Q LL+ G + + WDV +G +
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAV 167
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 461 IASGSEDSQVYIWHRASCDLIGAL-------PGHSGAVNCVSWNPANPHMLASASDDRTI 513
IASGSED V +W L+ L GH+ V V+W+P ++L SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 514 RIW 516
+W
Sbjct: 157 LVW 159
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 486 GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
GH+ V ++W P N +++AS S+D T+ +W + D
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPD 113
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
Query: 358 QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE-RYIEEDQTITSFS--LSRDNKF 414
R+ ++ ++ ++T + L + E +VE R I+ +T ++R N +
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-W 69
Query: 415 LLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474
++V + I ++N K+V ++ H IRS + ++ SGS+D V +W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVV-DFEAHPD---YIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 475 -RASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW--GLKDLNVKRKDCHSN 531
+ L GH V CV++NP +P AS DRT+++W G N
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 532 GVHYCN 537
GV+Y +
Sbjct: 186 GVNYVD 191
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 40/226 (17%)
Query: 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359
+R ++ ++G + +E + S HP + ++ SG++D ++ +W W+
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--------WENNW 130
Query: 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNL 419
L E T +G + MC +F+ +D
Sbjct: 131 AL-----EQTFEGHEHFVMC------------------------VAFN-PKDPSTFASGC 160
Query: 420 LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
L++ + +W++ G +R + + ++ ++ + S+D + IW +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYV-DYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525
+ L GH V+ ++P P ++ S S+D T++IW V++
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEK 264
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286
+ H D + + Y+ S S+D + +W + N L+ GH+ V CV+++
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAFNP 150
Query: 287 DDQQLLTCG-VEEAVRRWDV--SSGN-CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSI 342
D G ++ V+ W + S+ N L ++ G+ V PD+ ++ + ++D +I
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 343 CMWELGGK 350
+W+ K
Sbjct: 211 KIWDYQTK 218
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 225 QILQGHTDEVWFLQFS-HNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS-GHQKPVSCV 282
Q +GH V + F+ + AS DR+ +W + G T L+ G ++ V+ V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 283 SWSS--DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340
+ D ++T + ++ WD + +C+ E + +HP I SG+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 341 SICMWELGGKELECWKGQRTLKI 363
++ +W +K ++TL +
Sbjct: 251 TLKIW-----NSSTYKVEKTLNV 268
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 449 IRSCFGGLEQAFIASGSEDSQVYIWH-RASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507
IRS + ++ SGS+D V +W+ + L GH V CV++NP +P AS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 508 SDDRTIRIW--GLKDLNVKRKDCHSNGVHYCN 537
DRT+++W G N GV+Y +
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 40/226 (17%)
Query: 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359
+R ++ ++G + +E + S HP + ++ SG++D ++ +W W+
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--------WENNW 130
Query: 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNL 419
L E T +G + MC +F+ +D
Sbjct: 131 AL-----EQTFEGHEHFVMC------------------------VAFN-PKDPSTFASGC 160
Query: 420 LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
L++ + +W++ G +R + + ++ ++ + S+D + IW +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYV-DYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525
+ L GH V+ ++P P ++ S S+D T++IW V++
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEK 264
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 225 QILQGHTDEVWFLQFS-HNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS-GHQKPVSCV 282
Q +GH V + F+ + AS DR+ +W + G T L+ G ++ V+ V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 283 SWSS--DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340
+ D ++T + ++ WD + +C+ E + +HP I SG+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 341 SICMWELGGKELECWKGQRTLKI 363
++ +W +K ++TL +
Sbjct: 251 TLKIW-----NSSTYKVEKTLNV 268
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 412 NKFLLVNLLNQEIHLWNIEGEVK----LVAK--YKGHKRSRFVIRSCFGGLEQAFIASGS 465
N +LL + I LW+I K + AK + GH + V + L ++ S +
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVA 253
Query: 466 EDSQVYIW---HRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522
+D ++ IW + + + H+ VNC+S+NP + +LA+ S D+T+ +W L++L
Sbjct: 254 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 313
Query: 523 VK 524
+K
Sbjct: 314 LK 315
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 24/182 (13%)
Query: 225 QILQGHT----DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS 280
I GHT D W L S ++D+ +IW+ N H + H V+
Sbjct: 227 NIFTGHTAVVEDVAWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 281 CVSWSSDDQQLLTCG-VEEAVRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIF-SGA 337
C+S++ + +L G ++ V WD+ + LH +E + W P + I S
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 343
Query: 338 NDKSICMWEL--------------GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383
D+ + +W+L G EL G T KISD + II E
Sbjct: 344 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 403
Query: 384 LL 385
++
Sbjct: 404 IM 405
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 103/261 (39%), Gaps = 65/261 (24%)
Query: 307 SGNC-----LHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQRT 360
SG C L ++K G GL W+P+ ++ S ++D +IC+W++ K R
Sbjct: 170 SGECQPDLRLRGHQKEGYGL---SWNPNLNGYLLSASDDHTICLWDINATP----KEHRV 222
Query: 361 LKISDLEVTSDGKQIIT------------MCKESALLLLDREAKVERYIEEDQTITSFSL 408
+ D K I T + ES + + K+ + + + S
Sbjct: 223 I---------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 273
Query: 409 SRDNKFLLVNLL---------------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
+ D VN L ++ + LW++ + ++ HK F ++ +
Sbjct: 274 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ--W 331
Query: 454 GGLEQAFIASGSEDSQVYIW-------HRASCDLIGALP-------GHSGAVNCVSWNPA 499
+ +AS D ++++W +++ D P GH+ ++ SWNP
Sbjct: 332 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 391
Query: 500 NPHMLASASDDRTIRIWGLKD 520
P ++ S S+D +++W + +
Sbjct: 392 EPWIICSVSEDNIMQVWQMAE 412
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 38/189 (20%)
Query: 185 VEQALVLQREACMFHN---SSDRDMSLYTDHQCGRDQIPSRTLQI---LQGHTDEVWFLQ 238
V +A + + AC+ SSD + YT H + PS Q L+GH E + L
Sbjct: 133 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLS 190
Query: 239 FSHN-GKYLASSSNDRSAIIWEVDLNGG----VTLKHKLSGHQKPVSCVSWS-------- 285
++ N YL S+S+D + +W+++ + K+ +GH V V+W
Sbjct: 191 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 250
Query: 286 --SDDQQLLTCGVEEAVRRWDVSSGNC---LHVYEKAGLGLVSC-GWHPDRKWIF-SGAN 338
+DDQ+L+ WD + N H + A V+C ++P ++I +G+
Sbjct: 251 SVADDQKLMI---------WDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSA 300
Query: 339 DKSICMWEL 347
DK++ +W+L
Sbjct: 301 DKTVALWDL 309
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW--------HRASCDLIG 482
GE + + +GH++ + + + ++ S S+D + +W HR D
Sbjct: 171 GECQPDLRLRGHQKEGYGL--SWNPNLNGYLLSASDDHTICLWDINATPKEHRV-IDAKN 227
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVH 534
GH+ V V+W+ + + S +DD+ + IW ++ N K H+ H
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTVDAH 278
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 412 NKFLLVNLLNQEIHLWNIEGEVK----LVAK--YKGHKRSRFVIRSCFGGLEQAFIASGS 465
N +LL + I LW+I K + AK + GH + V + L ++ S +
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVA 251
Query: 466 EDSQVYIW---HRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522
+D ++ IW + + + H+ VNC+S+NP + +LA+ S D+T+ +W L++L
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311
Query: 523 VK 524
+K
Sbjct: 312 LK 313
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 24/182 (13%)
Query: 225 QILQGHT----DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS 280
I GHT D W L S ++D+ +IW+ N H + H V+
Sbjct: 225 NIFTGHTAVVEDVAWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 281 CVSWSSDDQQLLTCG-VEEAVRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIF-SGA 337
C+S++ + +L G ++ V WD+ + LH +E + W P + I S
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341
Query: 338 NDKSICMWEL--------------GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383
D+ + +W+L G EL G T KISD + II E
Sbjct: 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401
Query: 384 LL 385
++
Sbjct: 402 IM 403
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 103/261 (39%), Gaps = 65/261 (24%)
Query: 307 SGNC-----LHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQRT 360
SG C L ++K G GL W+P+ ++ S ++D +IC+W++ K R
Sbjct: 168 SGECQPDLRLRGHQKEGYGL---SWNPNLNGYLLSASDDHTICLWDINATP----KEHRV 220
Query: 361 LKISDLEVTSDGKQIIT------------MCKESALLLLDREAKVERYIEEDQTITSFSL 408
+ D K I T + ES + + K+ + + + S
Sbjct: 221 I---------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 271
Query: 409 SRDNKFLLVNLL---------------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
+ D VN L ++ + LW++ + ++ HK F ++ +
Sbjct: 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ--W 329
Query: 454 GGLEQAFIASGSEDSQVYIW-------HRASCDLIGALP-------GHSGAVNCVSWNPA 499
+ +AS D ++++W +++ D P GH+ ++ SWNP
Sbjct: 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 389
Query: 500 NPHMLASASDDRTIRIWGLKD 520
P ++ S S+D +++W + +
Sbjct: 390 EPWIICSVSEDNIMQVWQMAE 410
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 38/189 (20%)
Query: 185 VEQALVLQREACMFHN---SSDRDMSLYTDHQCGRDQIPSRTLQI---LQGHTDEVWFLQ 238
V +A + + AC+ SSD + YT H + PS Q L+GH E + L
Sbjct: 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLS 188
Query: 239 FSHN-GKYLASSSNDRSAIIWEVDLNGG----VTLKHKLSGHQKPVSCVSWS-------- 285
++ N YL S+S+D + +W+++ + K+ +GH V V+W
Sbjct: 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248
Query: 286 --SDDQQLLTCGVEEAVRRWDVSSGNC---LHVYEKAGLGLVSC-GWHPDRKWIF-SGAN 338
+DDQ+L+ WD + N H + A V+C ++P ++I +G+
Sbjct: 249 SVADDQKLMI---------WDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSA 298
Query: 339 DKSICMWEL 347
DK++ +W+L
Sbjct: 299 DKTVALWDL 307
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW--------HRASCDLIG 482
GE + + +GH++ + + + ++ S S+D + +W HR D
Sbjct: 169 GECQPDLRLRGHQKEGYGL--SWNPNLNGYLLSASDDHTICLWDINATPKEHRV-IDAKN 225
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVH 534
GH+ V V+W+ + + S +DD+ + IW ++ N K H+ H
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTVDAH 276
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 412 NKFLLVNLLNQEIHLWNIEGEVK----LVAK--YKGHKRSRFVIRSCFGGLEQAFIASGS 465
N +LL + I LW+I K + AK + GH + V + L ++ S +
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVA 255
Query: 466 EDSQVYIW---HRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522
+D ++ IW + + + H+ VNC+S+NP + +LA+ S D+T+ +W L++L
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 315
Query: 523 VK 524
+K
Sbjct: 316 LK 317
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 24/182 (13%)
Query: 225 QILQGHT----DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS 280
I GHT D W L S ++D+ +IW+ N H + H V+
Sbjct: 229 NIFTGHTAVVEDVAWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 281 CVSWSSDDQQLLTCG-VEEAVRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIF-SGA 337
C+S++ + +L G ++ V WD+ + LH +E + W P + I S
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 345
Query: 338 NDKSICMWEL--------------GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383
D+ + +W+L G EL G T KISD + II E
Sbjct: 346 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 405
Query: 384 LL 385
++
Sbjct: 406 IM 407
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 103/261 (39%), Gaps = 65/261 (24%)
Query: 307 SGNC-----LHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQRT 360
SG C L ++K G GL W+P+ ++ S ++D +IC+W++ K R
Sbjct: 172 SGECQPDLRLRGHQKEGYGL---SWNPNLNGYLLSASDDHTICLWDINATP----KEHRV 224
Query: 361 LKISDLEVTSDGKQIIT------------MCKESALLLLDREAKVERYIEEDQTITSFSL 408
+ D K I T + ES + + K+ + + + S
Sbjct: 225 I---------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 275
Query: 409 SRDNKFLLVNLL---------------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453
+ D VN L ++ + LW++ + ++ HK F ++ +
Sbjct: 276 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ--W 333
Query: 454 GGLEQAFIASGSEDSQVYIW-------HRASCDLIGALP-------GHSGAVNCVSWNPA 499
+ +AS D ++++W +++ D P GH+ ++ SWNP
Sbjct: 334 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 393
Query: 500 NPHMLASASDDRTIRIWGLKD 520
P ++ S S+D +++W + +
Sbjct: 394 EPWIICSVSEDNIMQVWQMAE 414
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 38/189 (20%)
Query: 185 VEQALVLQREACMFHN---SSDRDMSLYTDHQCGRDQIPSRTLQI---LQGHTDEVWFLQ 238
V +A + + AC+ SSD + YT H + PS Q L+GH E + L
Sbjct: 135 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLS 192
Query: 239 FSHN-GKYLASSSNDRSAIIWEVDLNGG----VTLKHKLSGHQKPVSCVSWS-------- 285
++ N YL S+S+D + +W+++ + K+ +GH V V+W
Sbjct: 193 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 252
Query: 286 --SDDQQLLTCGVEEAVRRWDVSSGNC---LHVYEKAGLGLVSC-GWHPDRKWIF-SGAN 338
+DDQ+L+ WD + N H + A V+C ++P ++I +G+
Sbjct: 253 SVADDQKLMI---------WDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSA 302
Query: 339 DKSICMWEL 347
DK++ +W+L
Sbjct: 303 DKTVALWDL 311
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW--------HRASCDLIG 482
GE + + +GH++ + + + ++ S S+D + +W HR D
Sbjct: 173 GECQPDLRLRGHQKEGYGL--SWNPNLNGYLLSASDDHTICLWDINATPKEHRV-IDAKN 229
Query: 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVH 534
GH+ V V+W+ + + S +DD+ + IW ++ N K H+ H
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTVDAH 280
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 260
S D +S++ + L I++GH +EV + +S++G YLA+ S D+S IWE
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Query: 261 DLNG-GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303
D +G L H + V V W + L + ++ VR W
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 53/291 (18%)
Query: 246 LASSSNDRSAIIWEVDLNGGVTLKHKL----SGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301
LA+ S D + IW + + T + L GH+ V V+WS+D L TC +++V
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW 132
Query: 302 RWDVSSGN----CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK- 356
W+ C+ V ++ + WHP + S + D ++ +W+ + EC
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Query: 357 ---GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNK 413
+ T+ SD + T + + +C S D +V +Y+ +D+ D++
Sbjct: 193 LNGHEGTVWSSDFDKT---EGVFRLCSGSD----DSTVRVWKYMGDDE---------DDQ 236
Query: 414 FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW 473
QE W E + V HKR + + F GL IAS D + ++
Sbjct: 237 --------QE---WVCEAILPDV-----HKRQVYNVAWGFNGL----IASVGADGVLAVY 276
Query: 474 HRASCDL----IGALPGHSGAVNCVSWNPAN-PHMLASASDDRTIRIWGLK 519
+ AL +N V W N +LA+ DD + W L+
Sbjct: 277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 409 SRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS 468
S D K LV++ + L ++ E HK++ IRS + +A+GS DS
Sbjct: 31 STDRKIKLVSVKYDDFTLIDVLDET-------AHKKA---IRSVAWRPHTSLLAAGSFDS 80
Query: 469 QVYIWHRASC-------DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
V IW + DL+ + GH V V+W+ + + LA+ S D+++ IW
Sbjct: 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIW 134
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 42/200 (21%)
Query: 323 SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES 382
S W P + +G+ D ++ +W KE RT +
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIW---AKEE---SADRTFE-------------------- 96
Query: 383 ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE---GEVKLVAKY 439
+D A +E + E + + S D +L ++ + +W + E + ++
Sbjct: 97 ----MDLLAIIEGHENE---VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL 149
Query: 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL--IGALPGHSGAVNCVSWN 497
+ H + ++ +A +AS S D V IW D + L GH G V ++
Sbjct: 150 QEHSQD---VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD 206
Query: 498 PANP-HMLASASDDRTIRIW 516
L S SDD T+R+W
Sbjct: 207 KTEGVFRLCSGSDDSTVRVW 226
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 222 RTLQILQGHTDEVWFLQF-SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHK-----LSGH 275
+ + ++ GHT V + + HN +AS S D + ++WE+ +GG+ L + L GH
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGH 130
Query: 276 QKPVSCVSWSSDDQQ-LLTCGVEEAVRRWDVSSG 308
K V V+W Q LL+ G + + WDV +G
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 461 IASGSEDSQVYIWHRASCDLIGAL-------PGHSGAVNCVSWNPANPHMLASASDDRTI 513
IASGSED V +W L+ L GH+ V V+W+P ++L SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 514 RIW 516
+W
Sbjct: 157 LVW 159
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 486 GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
GH+ V ++W P N +++AS S+D T+ +W + D
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
Query: 333 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLL 387
+ S + DK++ W+L G + + R+ K + D +T+DG ++ + L L
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 388 DREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-- 443
D +R++ + S + + ++ ++ I +W I+G+ +A GH
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDW 150
Query: 444 -RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH 502
V+ + + I S D V W+ + GH+ +N ++ +P +
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGT 209
Query: 503 MLASASDDRTIRIWGL 518
++ASA D I +W L
Sbjct: 210 LIASAGKDGEIMLWNL 225
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 18/286 (6%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 260
S+ RD +L + G DQ ++ +GH+ V + +G Y S+S D++ +W
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-- 92
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320
D+ G T + + GH+ V V +++ ++ ++ W + G CL
Sbjct: 93 DVATGETYQ-RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW 150
Query: 321 LVSCGWHPDRK------WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374
+ P+ K I S NDK + W L ++E I+ L + DG
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 375 IITMCKESALLLLDREAKVERYIEEDQTITSFSLS-RDNKFLLVNLLNQEIHLWNIEGEV 433
I + K+ ++L + AK Y Q FSL+ N++ L I +++++ +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 434 ---KLVAKYKGHKRSR--FVIRSCFGGLEQAFIASGSEDSQVYIWH 474
L ++ G+ ++ + + Q A G D+ + +W
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQ 314
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHL-WNIEGEVK----LVAKYKGHKRSRFVIRSCFGGLE 457
+TS + S LL++ + + W + G+ + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517
A+ S S D + +W A+ + GH V V + M+ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135
Query: 518 LK 519
+K
Sbjct: 136 IK 137
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
L G L GH+G V ++ + P++L SAS D+T+ W L
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT-LKHKLSGHQKPVS----CVSWSS 286
DEV+ L FS N +LA+++ ++ +D V L+ + +G+ K ++WS+
Sbjct: 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 287 DDQQLLTCGVEEAVRRWDVSSGN 309
D Q L + +R W V + N
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 218 QIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277
+I + + LQGH+ EV L + +G LAS ND IW+ + K + H
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---IPKFTKTNHNA 260
Query: 278 PVSCVSWSSDDQQLLTCG---VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIF 334
V V+W LL G +++ + W+ ++G ++ + AG + S W P K I
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIM 319
Query: 335 S--GANDKSICMWELGGKEL 352
S G D ++ +W L
Sbjct: 320 STHGFPDNNLSIWSYSSSGL 339
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 398 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE 457
+E + S S D FL V L N + ++++E + KL GH+ R
Sbjct: 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL-RTMAGHQ-----ARVGCLSWN 185
Query: 458 QAFIASGSEDSQVYIWH---RASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIR 514
+ ++SGS ++ H R + IG L GHS V ++W ++ LAS +D ++
Sbjct: 186 RHVLSSGSRSGAIH--HHDVRIANHQIGTLQGHSSEVCGLAWR-SDGLQLASGGNDNVVQ 242
Query: 515 IW 516
IW
Sbjct: 243 IW 244
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 231 TDEVWFL---QFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD 287
TDE ++ ++SH+G +L+ + I++V+ T ++GHQ V C+SW
Sbjct: 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQARVGCLSW--- 184
Query: 288 DQQLLTCGVEE-AVRRWDVSSGNCLHVYEKAGLGLVSCG--WHPDRKWIFSGANDKSICM 344
++ +L+ G A+ DV N + G CG W D + SG ND + +
Sbjct: 185 NRHVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243
Query: 345 WE 346
W+
Sbjct: 244 WD 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
Query: 333 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLL 387
+ S + DK++ W+L G + + R+ K + D +T+DG ++ + L L
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 388 DREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-- 443
D +R++ + S + + ++ ++ I +W I+G+ +A GH
Sbjct: 87 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDW 144
Query: 444 -RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH 502
V+ + + I S D V W+ + GH+ +N ++ +P +
Sbjct: 145 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGT 203
Query: 503 MLASASDDRTIRIWGL 518
++ASA D I +W L
Sbjct: 204 LIASAGKDGEIMLWNL 219
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 18/286 (6%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 260
S+ RD +L + G DQ ++ +GH+ V + +G Y S+S D++ +W
Sbjct: 29 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-- 86
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320
D+ G T + + GH+ V V +++ ++ ++ W + G CL
Sbjct: 87 DVATGETYQ-RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW 144
Query: 321 LVSCGWHPDRK------WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374
+ P+ K I S NDK + W L ++E I+ L + DG
Sbjct: 145 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 204
Query: 375 IITMCKESALLLLDREAKVERYIEEDQTITSFSLS-RDNKFLLVNLLNQEIHLWNIEGEV 433
I + K+ ++L + AK Y Q FSL+ N++ L I +++++ +
Sbjct: 205 IASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 263
Query: 434 ---KLVAKYKGHKRSR--FVIRSCFGGLEQAFIASGSEDSQVYIWH 474
L ++ G+ ++ + + Q A G D+ + +W
Sbjct: 264 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQ 308
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHL-WNIEGEVK----LVAKYKGHKRSRFVIRSCFGGLE 457
+TS + S LL++ + + W + G+ + V +KGH +++ C +
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 70
Query: 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517
A+ S S D + +W A+ + GH V V + M+ S S D+TI++W
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 129
Query: 518 LK 519
+K
Sbjct: 130 IK 131
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
L G L GH+G V ++ + P++L SAS D+T+ W L
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 41
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT-LKHKLSGHQKPVS----CVSWSS 286
DEV+ L FS N +LA+++ ++ +D V L+ + +G+ K ++WS+
Sbjct: 232 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 290
Query: 287 DDQQLLTCGVEEAVRRWDVSSGN 309
D Q L + +R W V + N
Sbjct: 291 DGQTLFAGYTDNVIRVWQVMTAN 313
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
Query: 333 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLL 387
+ S + DK++ W+L G + + R+ K + D +T+DG ++ + L L
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 388 DREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-- 443
D +R++ + S + + ++ ++ I +W I+G+ +A GH
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDW 150
Query: 444 -RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH 502
V+ + + I S D V W+ + GH+ +N ++ +P +
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGT 209
Query: 503 MLASASDDRTIRIWGL 518
++ASA D I +W L
Sbjct: 210 LIASAGKDGEIMLWNL 225
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 18/286 (6%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 260
S+ RD +L + G DQ ++ +GH+ V + +G Y S+S D++ +W
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-- 92
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320
D+ G T + + GH+ V V +++ ++ ++ W + G CL
Sbjct: 93 DVATGETYQ-RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW 150
Query: 321 LVSCGWHPDRK------WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374
+ P+ K I S NDK + W L ++E I+ L + DG
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 375 IITMCKESALLLLDREAKVERYIEEDQTITSFSLS-RDNKFLLVNLLNQEIHLWNIEGEV 433
I + K+ ++L + AK Y Q FSL+ N++ L I +++++ +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 434 ---KLVAKYKGHKRSR--FVIRSCFGGLEQAFIASGSEDSQVYIWH 474
L ++ G+ ++ + + Q A G D+ + +W
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQ 314
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHL-WNIEGEVK----LVAKYKGHKRSRFVIRSCFGGLE 457
+TS + S LL++ + + W + G+ + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517
A+ S S D + +W A+ + GH V V + M+ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135
Query: 518 LK 519
+K
Sbjct: 136 IK 137
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
L G L GH+G V ++ + P++L SAS D+T+ W L
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
Query: 333 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLL 387
+ S + DK++ W+L G + + R+ K + D +T+DG ++ + L L
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 388 DREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-- 443
D +R++ + S + + ++ ++ I +W I+G+ +A GH
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDW 150
Query: 444 -RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH 502
V+ + + I S D V W+ + GH+ +N ++ +P +
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGT 209
Query: 503 MLASASDDRTIRIWGL 518
++ASA D I +W L
Sbjct: 210 LIASAGKDGEIMLWNL 225
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 18/286 (6%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 260
S+ RD +L + G DQ ++ +GH+ V + +G Y S+S D++ +W
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-- 92
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320
D+ G T + + GH+ V V +++ ++ ++ W + G CL
Sbjct: 93 DVATGETYQ-RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW 150
Query: 321 LVSCGWHPDRK------WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374
+ P+ K I S NDK + W L ++E I+ L + DG
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 375 IITMCKESALLLLDREAKVERYIEEDQTITSFSLS-RDNKFLLVNLLNQEIHLWNIEGEV 433
I + K+ ++L + AK Y Q FSL+ N++ L I +++++ +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 434 ---KLVAKYKGHKRSR--FVIRSCFGGLEQAFIASGSEDSQVYIWH 474
L ++ G+ ++ + + Q A G D+ + +W
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQ 314
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHL-WNIEGEVK----LVAKYKGHKRSRFVIRSCFGGLE 457
+TS + S LL++ + + W + G+ + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517
A+ S S D + +W A+ + GH V V + M+ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135
Query: 518 LK 519
+K
Sbjct: 136 IK 137
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
L G L GH+G V ++ + P++L SAS D+T+ W L
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT-LKHKLSGHQKPVS----CVSWSS 286
DEV+ L FS N +LA+++ ++ +D V L+ + +G+ K ++WS+
Sbjct: 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 287 DDQQLLTCGVEEAVRRWDVSSGN 309
D Q L + +R W V + N
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
Query: 333 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLL 387
+ S + DK++ W+L G + + R+ K + D +T+DG ++ + L L
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 388 DREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-- 443
D +R++ + S + + ++ ++ I +W I+G+ +A GH
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDW 150
Query: 444 -RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH 502
V+ + + I S D V W+ + GH+ +N ++ +P +
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGT 209
Query: 503 MLASASDDRTIRIWGL 518
++ASA D I +W L
Sbjct: 210 LIASAGKDGEIMLWNL 225
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 12/239 (5%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 260
S+ RD +L + G DQ ++ +GH+ V + +G Y S+S D++ +W
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-- 92
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320
D+ G T + + GH+ V V +++ ++ ++ W + G CL
Sbjct: 93 DVATGETYQ-RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW 150
Query: 321 LVSCGWHPDRK------WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374
+ P+ K I S NDK + W L ++E I+ L + DG
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 375 IITMCKESALLLLDREAKVERYIEEDQTITSFSLS-RDNKFLLVNLLNQEIHLWNIEGE 432
I + K+ ++L + AK Y Q FSL+ N++ L I +++++ +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHL-WNIEGEVK----LVAKYKGHKRSRFVIRSCFGGLE 457
+TS + S LL++ + + W + G+ + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517
A+ S S D + +W A+ + GH V V + M+ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135
Query: 518 LK 519
+K
Sbjct: 136 IK 137
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
L G L GH+G V ++ + P++L SAS D+T+ W L
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT-LKHKLSGHQKPVS----CVSWSS 286
DEV+ L FS N +LA+++ ++ +D V L+ + +G+ ++WS+
Sbjct: 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSA 296
Query: 287 DDQQLLTCGVEEAVRRWDVSSGN 309
D Q L + +R W V + N
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 426 LWNIEG---EVKLV---AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
LW+I E K+V A + GH S V + L ++ S ++D ++ IW S
Sbjct: 206 LWDINAGPKEGKIVDAKAIFTGH--SAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNT 263
Query: 480 LIGA---LPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524
+ H+ VNC+S+NP + +LA+ S D+T+ +W L++L +K
Sbjct: 264 TSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 24/183 (13%)
Query: 226 ILQGHT----DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC 281
I GH+ D W L S ++D+ +IW+ N H + H V+C
Sbjct: 224 IFTGHSAVVEDVAWHLLHE---SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 282 VSWSSDDQQLLTCG-VEEAVRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIF-SGAN 338
+S++ + +L G ++ V WD+ + LH +E + W P + I S
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 339 DKSICMWEL--------------GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384
D+ + +W+L G EL G T KISD + +I E +
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 400
Query: 385 LLL 387
+ +
Sbjct: 401 MQI 403
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 112/284 (39%), Gaps = 63/284 (22%)
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVSSG-------NCLH 312
D +G +L GHQK +SW+S+ LL+ + V WD+++G +
Sbjct: 164 DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 223
Query: 313 VYEKAGLGLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD 371
++ + WH + +F S A+D+ + +W+ + T K S L
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT--------RSNTTSKPSHL----- 270
Query: 372 GKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIE 430
V+ + E + S + ++F+L ++ + LW++
Sbjct: 271 ---------------------VDAHTAE---VNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW-------HRASCDLIGA 483
+ ++ HK F + + + +AS D ++ +W +++ D
Sbjct: 307 NLKLKLHTFESHKDEIFQVH--WSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 484 LP-------GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520
P GH+ ++ SWNP P ++ S S+D ++IW + +
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 42/222 (18%)
Query: 307 SGNC-----LHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQRT 360
SG C L ++K G GL W+ + + S ++D ++C+W++ G +
Sbjct: 166 SGECNPDLRLRGHQKEGYGL---SWNSNLSGHLLSASDDHTVCLWDINA-------GPKE 215
Query: 361 LKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLL 420
KI D + G + ++ A LL + F D++ L++
Sbjct: 216 GKIVDAKAIFTGHSAV--VEDVAWHLLHE--------------SLFGSVADDQKLMI--- 256
Query: 421 NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL 480
W+ + + V F + +A+GS D V +W + L
Sbjct: 257 ------WDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 481 -IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521
+ H + V W+P N +LAS+ DR + +W L +
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
Query: 333 IFSGANDKSICMWELGGKELECWKGQRTLK-----ISDLEVTSDGKQIITMCKESALLLL 387
+ S + DK++ W+L G + + R+ K + D +T+DG ++ + L L
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 388 DREA--KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-- 443
D +R++ + S + + ++ ++ I +W I+G+ +A GH
Sbjct: 93 DVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC--LATLLGHNDW 150
Query: 444 -RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH 502
V+ + + I S D V W+ + GH+ +N ++ +P +
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGT 209
Query: 503 MLASASDDRTIRIWGL 518
++ASA D I +W L
Sbjct: 210 LIASAGKDGEIXLWNL 225
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 118/291 (40%), Gaps = 18/291 (6%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 260
S+ RD +L + G DQ ++ +GH+ V + +G Y S+S D++ +W
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-- 92
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320
D+ G T + + GH+ V V +++ ++ ++ W + G CL
Sbjct: 93 DVATGETYQ-RFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 321 LVSCGWHPDRK------WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374
+ P+ K I S NDK + W L ++E I+ L + DG
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 375 IITMCKESALLLLDREAKVERYIEEDQTITSFSLS-RDNKFLLVNLLNQEIHLWNIEGEV 433
I + K+ + L + AK Y Q FSL+ N++ L I +++++ +
Sbjct: 211 IASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 434 ---KLVAKYKGHKRSR--FVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
L ++ G+ ++ + + Q A G D+ + +W + +
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA-GYTDNVIRVWQVXTAN 319
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 403 ITSFSLSRDNKFLLVNLLNQEIHL-WNIEGEVK----LVAKYKGHKRSRFVIRSCFGGLE 457
+TS + S LL++ + + W + G+ + V +KGH +++ C +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH---IVQDCTLTAD 76
Query: 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517
A+ S S D + +W A+ + GH V V + ++ S S D+TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII-SGSRDKTIKVWT 135
Query: 518 LK 519
+K
Sbjct: 136 IK 137
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 480 LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518
L G L GH+G V ++ + P++L SAS D+T+ W L
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 426 LWNIEG---EVKLV---AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479
LW+I E K+V A + GH S V + L ++ S ++D ++ IW S
Sbjct: 206 LWDINAGPKEGKIVDAKAIFTGH--SAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNT 263
Query: 480 LIGA---LPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524
+ H+ VNC+S+NP + +LA+ S D+T+ +W L++L +K
Sbjct: 264 TSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 109/280 (38%), Gaps = 63/280 (22%)
Query: 261 DLNGGVTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVSSG-------NCLH 312
D +G +L GHQK +SW+S+ LL+ + V WD+++G +
Sbjct: 164 DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 223
Query: 313 VYEKAGLGLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD 371
++ + WH + +F S A+D+ + +W+ + T K S L
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT--------RSNTTSKPSHL----- 270
Query: 372 GKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIE 430
V+ + E + S + ++F+L ++ + LW++
Sbjct: 271 ---------------------VDAHTAE---VNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW-------HRASCDLIGA 483
+ ++ HK F + + + +AS D ++ +W +++ D
Sbjct: 307 NLKLKLHTFESHKDEIFQVH--WSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 484 LP-------GHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
P GH+ ++ SWNP P ++ S S+D +IW
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 24/180 (13%)
Query: 226 ILQGHT----DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC 281
I GH+ D W L S ++D+ IW+ N H + H V+C
Sbjct: 224 IFTGHSAVVEDVAWHLLHE---SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 282 VSWSSDDQQLLTCG-VEEAVRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIF-SGAN 338
+S++ + +L G ++ V WD+ + LH +E + W P + I S
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 339 DKSICMWEL--------------GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384
D+ + +W+L G EL G T KISD + +I E +
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 400
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 453 FGGLEQAFIASGSEDSQVYIWHRASCDL-IGALPGHSGAVNCVSWNPANPHMLASASDDR 511
F + +A+GS D V +W + L + H + V W+P N +LAS+ DR
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 512 TIRIWGLKDL 521
+ +W L +
Sbjct: 343 RLNVWDLSKI 352
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHN--GKYLASSSNDRSAIIW 258
SSDR + ++ G+ I L+GH VW + ++H G LAS S DR IIW
Sbjct: 32 SSDRSVKIFDVRNGGQILIAD-----LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 259 EVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL-LTCGVEEAV---------RRWDVSSG 308
+ NG H+ +GH V+ V W+ D L L CG + +W+V
Sbjct: 87 R-EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI 145
Query: 309 NCLHVYEKAGLGLVSCGWHP 328
N H +G + W P
Sbjct: 146 NNAHT-----IGCNAVSWAP 160
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 110/258 (42%), Gaps = 31/258 (12%)
Query: 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD-- 287
H D + Q + G LA+ S+DRS I++V NGG L L GH+ PV V+W+
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDV-RNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 288 DQQLLTCGVEEAVRRWDVSSGNCLHVYEKAG--LGLVSCGWHP-DRKWIFS-GANDKSIC 343
L +C + V W +G +E AG + S W P D I + G++D +I
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTI 403
+ G +GQ +K + T + L+D + ++ I
Sbjct: 131 LLTYTG------EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSG-----QKPNYI 179
Query: 404 TSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR-SRFVIRSCFGGLEQAFI 461
F S DN L+ L +E +G+ K K + H R V + GL + I
Sbjct: 180 KRFASGGCDN---LIKLWKEE-----EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231
Query: 462 ASGSEDSQVYIWHRASCD 479
AS S+D +V+IW +CD
Sbjct: 232 ASCSQDGRVFIW---TCD 246
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 480 LIGALPGHSGAVNCVSW-NPANPHMLASASDDRTIRIW 516
LI L GH G V V+W +P ++LAS S DR + IW
Sbjct: 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 456 LEQAFIASGSEDSQVYIWHRASCDLIG---ALPGHSGAVNCVSWNPANPHMLASASDDRT 512
L ++ S ++D ++ IW S + ++ H+ VNC+S+NP + +LA+ S D+T
Sbjct: 238 LHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297
Query: 513 IRIWGLKDLNVK 524
+ +W L++L +K
Sbjct: 298 VALWDLRNLKLK 309
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 24/181 (13%)
Query: 226 ILQGHT----DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC 281
I GHT D W L S ++D+ +IW+ N H + H V+C
Sbjct: 222 IFTGHTAVVEDVSWHLLHE---SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 282 VSWSSDDQQLLTCG-VEEAVRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIF-SGAN 338
+S++ + +L G ++ V WD+ + LH +E + W P + I S
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 339 DKSICMWEL--------------GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384
D+ + +W+L G EL G T KISD + +I E +
Sbjct: 339 DRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
Query: 385 L 385
+
Sbjct: 399 M 399
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/258 (18%), Positives = 104/258 (40%), Gaps = 59/258 (22%)
Query: 307 SGNC-----LHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQRT 360
SG C L ++K G GL W+P+ + S ++D +IC+W++ E
Sbjct: 164 SGECNPDLRLRGHQKEGYGL---SWNPNLSGHLLSASDDHTICLWDISAVPKEG------ 214
Query: 361 LKISDLEVTSDGKQII---------------TMCKESALLLLDREAK--------VERYI 397
K+ D + G + ++ + L++ D + V+ +
Sbjct: 215 -KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 398 EEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL 456
E + S + ++F+L ++ + LW++ + ++ HK F ++ +
Sbjct: 274 AE---VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ--WSPH 328
Query: 457 EQAFIASGSEDSQVYIW-------HRASCDLIGALP-------GHSGAVNCVSWNPANPH 502
+ +AS D ++ +W ++ D P GH+ ++ SWNP P
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 503 MLASASDDRTIRIWGLKD 520
++ S S+D +++W + +
Sbjct: 389 VICSVSEDNIMQVWQMAE 406
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-------DLIGA 483
GE + +GH++ + + + + S S+D + +W ++ D
Sbjct: 165 GECNPDLRLRGHQKEGYGL--SWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI 222
Query: 484 LPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVH 534
GH+ V VSW+ + + S +DD+ + IW + N K HS H
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTS-KPSHSVDAH 272
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 220 PSRTLQILQGHTDEVWFLQFSHN---GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276
P + +++ D + L FS G +L + S WEV + G T+ H
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQMHT 86
Query: 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGLVSCGWHPDRKWIFS 335
PV V WS D ++ T ++ + WD+SS + + + A + + P+ + +
Sbjct: 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMT 146
Query: 336 GANDKSICMWE 346
G+ DK++ W+
Sbjct: 147 GSWDKTLKFWD 157
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC--VSW 284
L+GH V + SH ASSS D +W DL G +K +G PV +++
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLW--DLENGKQIKSIDAG---PVDAWTLAF 130
Query: 285 SSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICM 344
S D Q L T V + V SG + + G ++S + PD K++ SGA D I +
Sbjct: 131 SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINI 190
Query: 345 WELG-GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388
+++ GK L +G + I L + D + ++T + + + D
Sbjct: 191 FDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 237 LQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV 296
+ +S +GKYLAS + D II D+ G L H L GH P+ +++S D Q L+T
Sbjct: 170 IAYSPDGKYLASGAID--GIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 297 EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK 356
+ ++ +DV N +++ + PD S ++DKS+ +W++G +
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Query: 357 GQRTLKISDLEVTSDGKQIITMCKESALLLLD 388
++ ++ +G +I+++ + + + D
Sbjct: 287 FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 108/282 (38%), Gaps = 53/282 (18%)
Query: 228 QGHTDEVWFLQFSHNGK----YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
Q H D +W + + N K + + S D +W+ + + L+ L GHQ V V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW-RDERLDLQWSLEGHQLGVVSVD 87
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
S + ++ +R WD+ +G + + + + + PD +++ +G + +
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 147
Query: 344 MW--ELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ 401
++ E G KE LD K
Sbjct: 148 IFGVESGKKEYS---------------------------------LDTRGKF-------- 166
Query: 402 TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI 461
I S + S D K+L ++ I++++I KL+ +GH IRS + +
Sbjct: 167 -ILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMP---IRSLTFSPDSQLL 221
Query: 462 ASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHM 503
+ S+D + I+ +L G L GH+ V V++ P + H
Sbjct: 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 217 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276
D + L L+GH + L FS + + L ++S+D I++V L LSGH
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ---HANLAGTLSGHA 248
Query: 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY 314
V V++ DD ++ +++V+ WDV + C+H +
Sbjct: 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 383 ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE---GEVKLVAKY 439
+LL D E + ++ D S +NK + L N + L++ + +A++
Sbjct: 51 SLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF 109
Query: 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-----DLIGALPGHSGA---- 490
H S ++ F + +ASG + +++IW C + PG S +
Sbjct: 110 SNHSSSVKTVK--FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167
Query: 491 VNCVSWNPANPHMLASASDDRTIRIWGLK 519
V ++WN + H+ ASA IW LK
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLK 196
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 249 SSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQ-LLTCGVEEAVRRWDVSS 307
S ND S +IW++ N L+ GHQK + + W D+ LL+ G + V W+ S
Sbjct: 236 SDNDPSILIWDL-RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294
Query: 308 GNCLHVYEKAGLGLVSCGWHPDRKWIFSGA 337
L + G + P+ +F+ A
Sbjct: 295 AEQLSQFPARGNWCFKTKFAPEAPDLFACA 324
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/308 (19%), Positives = 115/308 (37%), Gaps = 57/308 (18%)
Query: 218 QIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWE------------------ 259
Q +T + L+GH ++V + + + + + SSS D I+W+
Sbjct: 51 QFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM 110
Query: 260 --------------------------VDLNGGVTLKHK-LSGHQKPVSCVSWSSDDQQLL 292
D N + K K ++ H +S S+++ D Q+L
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 293 TCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR--KWIFSGANDKSICMWEL-GG 349
T + WDV SG L + G ++ P SG DK +W++ G
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 350 KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTI----TS 405
+ ++ ++ + ++ + G + ++ L D A E I ++I +S
Sbjct: 231 QCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289
Query: 406 FSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS 465
S + L + I++W++ ++ + GH+ +R G AF SGS
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDG--TAF-CSGS 345
Query: 466 EDSQVYIW 473
D + +W
Sbjct: 346 WDHTLRVW 353
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286
L + L S + K S +D + +W++ TL + GH SC+ S+
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH---NQTLVRQFQGHTDGASCIDISN 193
Query: 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSI 342
D +L T G++ VR WD+ G L ++ + S G+ P +W+ G ++
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNV 248
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 328 PDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLL 387
PD K FS +D +I +W+L + L T S +++++DG ++ T ++ +
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 388 D-REAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSR 446
D RE + + + I S ++L V + + + + ++ KY+ H
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP----DKYQLHLHES 266
Query: 447 FVIRSCFGGLEQAFIASGSED 467
V+ F + F+++G ++
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDN 287
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSW 284
+I Q H E+ L+F +G+ L SSS D IW V L GH+ V+ ++
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTLIGHRATVTDIAI 186
Query: 285 SSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEK 316
+ +L+ ++ +R W+ +G +H + +
Sbjct: 187 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 218
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSW 284
+I Q H E+ L+F +G+ L SSS D IW V L GH+ V+ ++
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTLIGHRATVTDIAI 189
Query: 285 SSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEK 316
+ +L+ ++ +R W+ +G +H + +
Sbjct: 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 121/309 (39%), Gaps = 52/309 (16%)
Query: 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQ 290
T++V L +SH+G + + + +W N L + L+ H+ P+ V W+ D
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLW----NKTGALLNVLNFHRAPIVSVKWNKDGTH 163
Query: 291 LLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK 350
+++ VE W+V SG + +E + E GG
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFE----------------------------LKETGGS 195
Query: 351 EL--ECWKGQRTLKISDLEVTSDGKQIITMCKESALLL-LDREAKVERYIEEDQTITSFS 407
+ E G +L + D+E D K +I K + + + + + I I+
Sbjct: 196 SINAENHSGDGSLGV-DVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE 254
Query: 408 LSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED 467
+ NK LL + + +W+ G + GH +S ++ + + G ++ + S S D
Sbjct: 255 FNDTNKLLLSASDDGTLRIWH-GGNGNSQNCFYGHSQS--IVSASWVGDDK--VISCSMD 309
Query: 468 SQVYIWHRA-----SCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522
V +W + ++ +P +G ++ + A A D + ++ LK LN
Sbjct: 310 GSVRLWSLKQNTLLALSIVDGVPIFAGRIS------QDGQKYAVAFMDGQVNVYDLKKLN 363
Query: 523 VKRKDCHSN 531
K + + N
Sbjct: 364 SKSRSLYGN 372
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286
L GH + L+F+ K L S+S+D + IW G ++ GH + + SW
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNCFYGHSQSIVSASWVG 299
Query: 287 DDQQLLTCGVEEAVRRWDVSSGNCL 311
DD ++++C ++ +VR W + L
Sbjct: 300 DD-KVISCSMDGSVRLWSLKQNTLL 323
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 131/323 (40%), Gaps = 43/323 (13%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286
L GH + ++++ G L S S D SA +W LNG L GH + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVW-YSLNG--ERLGTLDGHTGTIWSIDVDC 84
Query: 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFS-----GANDKS 341
+ +T + +++ WDVS+G C+ + K+ + + + P + + N S
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATW-KSPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 342 ICMWEL----GGKELECWKGQRTLKISDLEV---------TSDGKQIITMCKESALLLLD 388
I ++E+ EL + KI E ++ GK II K+ + D
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 389 REAKVERYIE----EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH-- 442
E Y++ +++I+ S D + + + + L ++ ++++ KY+
Sbjct: 204 VSNNYE-YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS-TLQVLKKYETDCP 261
Query: 443 -------KRSRFVIRSCFGGLEQAFIASGSEDS---QVYIWHRASCDLIGALPGHSGAVN 492
F+I GG E + + S + + +H+ + IG + GH G +N
Sbjct: 262 LNTAVITPLKEFIILG--GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN 319
Query: 493 CVSWNPANPHMLASASDDRTIRI 515
V+ +P AS +D IR+
Sbjct: 320 TVAISPQGT-SYASGGEDGFIRL 341
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD- 329
KL+GH++P++ V ++ + L +C + + W +G L + G W D
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD----GHTGTIWSIDV 82
Query: 330 ---RKWIFSGANDKSICMWEL-GGKELECWKGQRTLK 362
K+ +G+ D SI +W++ G+ + WK +K
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK 119
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 438 KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN 497
K GH+R ++ E + S S+DS +W+ + + +G L GH+G + + +
Sbjct: 27 KLTGHERPLTQVKY---NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD 83
Query: 498 PANPHMLASASDDRTIRIWGLKD 520
+ + + S D +I++W + +
Sbjct: 84 CFTKYCV-TGSADYSIKLWDVSN 105
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 114/289 (39%), Gaps = 46/289 (15%)
Query: 239 FSHNGKYLASSSNDRSAIIWEVD-LNGGVTLKHK---LSGHQKPVSCVSWSSDDQQLLTC 294
+ H+ SSS D++ +W+ + L + S H PVS L+
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAV 161
Query: 295 GVE-EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DKSICMWELGGKE- 351
G V+ D+ SG+C H+ + +++ W P +I + A+ D + +W++
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 352 ----LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFS 407
L+ G+++ + +GK + +C S L L +
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGK-VNGLCFTSDGLHL------------------LT 262
Query: 408 LSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED 467
+ DN+ L N N E L N G+V +K K +F + SC E F+ G
Sbjct: 263 VGTDNRMRLWNSSNGENTLVNY-GKVCNNSK----KGLKFTV-SCGCSSEFVFVPYG--- 313
Query: 468 SQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
S + ++ S + I L GH V+C + +N L S S D I W
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQ-SNFQELYSGSRDCNILAW 361
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 225 QILQGHTDEVWFLQFSHNGKY-LASSSNDRSAIIWEVDLNGG--VTLKH----------- 270
ILQGH E+ + +S Y LA++S D +W+V G +TL
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239
Query: 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG-NCLHVY------EKAGLGL-V 322
+ H V+ + ++SD LLT G + +R W+ S+G N L Y K GL V
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV 299
Query: 323 SCG 325
SCG
Sbjct: 300 SCG 302
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 393 VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSC 452
V+ Y + TS S + K N L Q ++N E V H S + C
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFNFEETVY------SHHMSPVSTKHC 157
Query: 453 FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRT 512
+A G+ +V + S L GH + VSW+P ++LA+AS D
Sbjct: 158 L-------VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 513 IRIWGLK 519
+++W ++
Sbjct: 211 VKLWDVR 217
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 454 GGLEQAFIASGSEDS--QVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDD 510
GG + + E+S Q Y +A C + P H +V V W P + M S+S D
Sbjct: 62 GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121
Query: 511 RTIRIWGLKDLNV 523
+T+++W L
Sbjct: 122 KTLKVWDTNTLQT 134
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 245 YLASSSNDRSAIIWEV-DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR-- 301
+LA++S D++ IW++ + G + + L H+ PV+ +S D +LLT + +R
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 302 ---RWDVSSGNCLHVYEK-AGLGLVSCGWHPDRKWIFSG----ANDKSICMWEL 347
+WD G H + L + WHP I G N KS +EL
Sbjct: 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 487 HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524
H V V+ NP LA+AS D+T++IW L+ + K
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 286
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 114/284 (40%), Gaps = 33/284 (11%)
Query: 217 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIW----EVDLNGGVTLKHKL 272
+ + S+ ++ H V F+ NG+ +A D + I+ + D +G + + L
Sbjct: 94 NALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL 153
Query: 273 SGHQKPVSCVSWSSDDQ-QLLTCGVEEAVRRWDVSSGNCL----------HVYEKAGLGL 321
+GH+ S + D + +L+T ++ WDV++G + H + L +
Sbjct: 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213
Query: 322 VSCGWHPDRKWIFSGANDKSICMWEL--GGKELECWKGQRTLKISDLEVTSDGKQIITMC 379
S + SG+ D ++ +W+L + + + G I+ ++ DG++ T
Sbjct: 214 NSL----NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGS 268
Query: 380 KESALLLLDREA---------KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430
+ L D + +R E +TS + S + L N + ++W+
Sbjct: 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328
Query: 431 GEVKLVAKYKGHKRSRFVIRSCFG-GLEQAFIASGSEDSQVYIW 473
++V + S SC G + + + +GS D + IW
Sbjct: 329 -LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 43/205 (20%)
Query: 321 LVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380
+ S W P++ WI S + D + +W +T K
Sbjct: 69 VYSLDWTPEKNWIVSASQDGRLIVW----------------------------NALTSQK 100
Query: 381 ESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK 440
A+ L + Q++ L D+ + NL +Q + +G + +
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGL--DSACSIFNLSSQA----DRDGNMPVSRVLT 154
Query: 441 GHKRSRFVIRSC-FGGLEQAFIASGSEDSQVYIWHRASCDLIGAL-----PGHSGAVNCV 494
GHK SC + ++ + +GS D +W + I GH+ V +
Sbjct: 155 GHKG---YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 495 SWNPANPHMLASASDDRTIRIWGLK 519
S N N +M S S D T+R+W L+
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLR 236
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/235 (18%), Positives = 94/235 (40%), Gaps = 28/235 (11%)
Query: 225 QILQGHTDEVWFLQFSHNGKY-LASSSNDRSAIIWEVDLNGGVTL--KHKLSGHQKPVSC 281
++L GH Q+ + + L + S D++ ++W+V +++ SGH V
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 282 VSWSSDDQQLLTCG-VEEAVRRWDVS-SGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND 339
+S +S + + G + VR WD+ + + Y + S + PD + +G++D
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 340 KSICMWEL-GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI- 397
+ ++++ G +L+ + + ++L + + I S LL + + Y+
Sbjct: 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-----SGRLLFAGYSNGDCYVW 325
Query: 398 ----------------EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLV 436
+ I+ LS D L ++ + +W G K+V
Sbjct: 326 DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 245 YLASSSNDRSAIIWEV-DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR-- 301
+LA++S D++ IW++ + G + + L H+ PV+ +S D +LLT + +R
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 302 ---RWDVSSGNCLHVYEK-AGLGLVSCGWHPDRKWIFSG----ANDKSICMWEL 347
+WD G H + L + WHP I G N KS +EL
Sbjct: 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 487 HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524
H V V+ NP LA+AS D+T++IW L+ + K
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 286
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 245 YLASSSNDRSAIIWEV-DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR-- 301
+LA++S D++ IW++ + G + + L H+ PV+ +S D +LLT + +R
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Query: 302 ---RWDVSSGNCLHVYEK-AGLGLVSCGWHPDRKWIFSG----ANDKSICMWEL 347
+WD G H + L + WHP I G N KS +EL
Sbjct: 325 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 378
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 487 HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524
H V V+ NP LA+AS D+T++IW L+ + K
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 287
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 413 KFLLVNLLNQEIHLWNI-EGEVKLVAKYKGHKRSRFV-IRSCFGGLEQAFIASGSEDSQV 470
K +LV + + LW I E E LV K+ ++ V S F QA SG +D V
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA--VSGGKDFSV 163
Query: 471 YIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
+W + ++ + HS VNCV+ P + S +D I +W +
Sbjct: 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 400 DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459
D + SFS +NKFL + ++ I LW + K++ + G V+R ++
Sbjct: 147 DAKVVSFS---ENKFLTASA-DKTIKLWQND---KVIKTFSGIHND--VVRH-LAVVDDG 196
Query: 460 FIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
S S D + + + D++ GH V C+ P + S +DRT+RIW +
Sbjct: 197 HFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKE 254
Query: 520 DLNVKR-----------KDCHSNG 532
+ ++K+ DC SNG
Sbjct: 255 NGSLKQVITLPAISIWSVDCXSNG 278
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 227 LQGHTDEVW---FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283
LQ H VW + FS N K+L +S+ D++ +W+ D + SG V
Sbjct: 138 LQAHNASVWDAKVVSFSEN-KFLTASA-DKTIKLWQND-----KVIKTFSGIHNDVVRHL 190
Query: 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343
DD ++C + ++ D +G+ L YE + P+ I S D+++
Sbjct: 191 AVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVR 249
Query: 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ 401
+W L+ + I ++ S+G II ++ + + +E R+ ED+
Sbjct: 250 IWSKENGSLKQVITLPAISIWSVDCXSNG-DIIVGSSDNLVRIFSQEK--SRWASEDE 304
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 134/305 (43%), Gaps = 55/305 (18%)
Query: 237 LQFSHN-GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS----CVSWSSDDQQL 291
++FS + G+++ + +DR I D G LK+ + Q+PV +SW D Q+
Sbjct: 212 VEFSPDSGEFVITVGSDRK--ISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWL-DSQKF 267
Query: 292 LTCGVEEAVRRWDVSSGNCLHVY----EKAG---LGLVSCGWHPDRKWIFSGANDKSICM 344
T G + +R WDV++ C+ + ++ G +G+V+ G I S + D ++
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----NGRIISLSLDGTLNF 323
Query: 345 WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTIT 404
+ELG E+ L+ S + IT + L+ + ++ + +
Sbjct: 324 YELGHDEV-------------LKTISGHNKGITALTVNPLISGSYDGRIMEW-------S 363
Query: 405 SFSLSRDNKFLLVNLLNQEIH-----LWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459
S S+ +D+ L+V+L N + W+ +V + K++ + + + G
Sbjct: 364 SSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG----- 418
Query: 460 FIASGSEDSQVYIWHRASCDLIGALPGHS-GAVNCVSWNPANPHMLASASDDRTIRIWGL 518
F A + D + I + D+I ++ +S G+ +S N ++ + TI+++ L
Sbjct: 419 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQN----YVAVGLEEGNTIQVFKL 474
Query: 519 KDLNV 523
DL V
Sbjct: 475 SDLEV 479
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 415 LLVNLLNQEIHLWNI-EGEVKLVAKYKGHKRSRFV-IRSCFGGLEQAFIASGSEDSQVYI 472
+LV + + LW + E E +V+K+ ++ V S QA SGS+D + +
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV--SGSKDICIKV 153
Query: 473 WHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
W A ++ + H+ V CV+ +P + S S+D I +W +
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 48/269 (17%)
Query: 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW----DVSSGNCLHVYEKAGLGLVSCGW-H 327
SGH V V + + + TC ++ ++ + D S+ + +V+ W
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 328 PDRKWIFSGAN-DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLL 386
P+ I + A+ DK++ +WE + EC G+R K+ L +D K + K + L
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEEC-SGRRWNKLCTL---NDSKGSLYSVKFAPAHL 123
Query: 387 LDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN-QEIHLWNIEGEVKLVA-KYKGHKR 444
+ A L D L + L ++ W + E+K+++ H +
Sbjct: 124 GLKLA---------------CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168
Query: 445 SRFVIRSC----------FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCV 494
S F + C LEQA I +D ++++ LPGH + +
Sbjct: 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSI 220
Query: 495 SWNPANP---HMLASASDDRTIRIWGLKD 520
SW P+ ++A+ D IRI+ + +
Sbjct: 221 SWAPSIGRWYQLIATGCKDGRIRIFKITE 249
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 48/269 (17%)
Query: 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW----DVSSGNCLHVYEKAGLGLVSCGW-H 327
SGH V V + + + TC ++ ++ + D S+ + +V+ W
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 328 PDRKWIFSGAN-DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLL 386
P+ I + A+ DK++ +WE + EC G+R K+ L +D K + K + L
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEEC-SGRRWNKLCTL---NDSKGSLYSVKFAPAHL 121
Query: 387 LDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN-QEIHLWNIEGEVKLVA-KYKGHKR 444
+ A L D L + L ++ W + E+K+++ H +
Sbjct: 122 GLKLA---------------CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 166
Query: 445 SRFVIRSC----------FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCV 494
S F + C LEQA I +D ++++ LPGH + +
Sbjct: 167 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSI 218
Query: 495 SWNPANP---HMLASASDDRTIRIWGLKD 520
SW P+ ++A+ D IRI+ + +
Sbjct: 219 SWAPSIGRWYQLIATGCKDGRIRIFKITE 247
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGLVS-CGWHPDRKWIF 334
+P+SC +W+ D Q+ C V ++ S + V+E K G V+ W PD I
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 68
Query: 335 SGANDKSICMWELGGK 350
+ D++ +W L G+
Sbjct: 69 TCGTDRNAYVWTLKGR 84
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 246 LASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305
+A N+ I+E N V + H+L H V+ V W+ D +++TCG + W +
Sbjct: 23 IAICPNNHEVHIYEKSGNKWVQV-HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81
>pdb|1XUB|A Chain A, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
Length = 298
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 396 YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455
Y+E +F L R N ++ ++Q I W G + K G S F I G
Sbjct: 113 YLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNG 172
Query: 456 LEQAFIASGSED--SQVYIWHRASCDLIGALPGHSGAVNCVS 495
F+ S D S ++ HRA + H A+NC +
Sbjct: 173 PRHVFVGLPSIDALSALHPDHRALSNF------HDMAINCFA 208
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGLVS-CGWHPDRKWIF 334
+P+SC +W+ D Q+ C V ++ S + V+E K G V+ W PD I
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIV 68
Query: 335 SGANDKSICMWELGGK 350
+ D++ +W L G+
Sbjct: 69 TCGTDRNAYVWTLKGR 84
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 246 LASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305
+A N+ I+E N V + H+L H V+ + W+ D +++TCG + W +
Sbjct: 23 IAICPNNHEVHIYEKSGNKWVQV-HELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTL 81
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 19/138 (13%)
Query: 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS--GHQKPVSCVSW 284
L+ H +V + ++ + + + DR+A +W + G T K L + CV W
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLK---GRTWKPTLVILRINRAARCVRW 104
Query: 285 SSDDQQLLT---------CGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFS 335
+ ++++ C E+ W C H+ + ++S WHP+ + +
Sbjct: 105 APNEKKFAVGSGSRVISICYFEQENDWW-----VCKHIKKPIRSTVLSLDWHPNSVLLAA 159
Query: 336 GANDKSICMWELGGKELE 353
G+ D ++ KE+E
Sbjct: 160 GSCDFKCRIFSAYIKEVE 177
>pdb|1U1W|A Chain A, Structure And Function Of Phenazine-biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1W|B Chain B, Structure And Function Of Phenazine-biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1X|A Chain A, Structure And Function Of Phenazine-Biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1X|B Chain B, Structure And Function Of Phenazine-Biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1XUA|A Chain A, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
pdb|1XUA|B Chain B, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
Length = 298
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 396 YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455
Y+E +F L R N ++ ++Q I W G + K G S F I G
Sbjct: 113 YLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNG 172
Query: 456 LEQAFIASGSED--SQVYIWHRASCDLIGALPGHSGAVNCVS 495
F+ S D S ++ HRA + H A+NC +
Sbjct: 173 PRHVFVGLPSIDALSALHPDHRALSNF------HDMAINCFA 208
>pdb|1T6K|A Chain A, Crystal Structure Of Phzf From Pseudomonas Fluorescens
2-79
Length = 278
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 396 YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455
Y+E +F L R N ++ ++Q I W G + K G S F I G
Sbjct: 93 YLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNG 152
Query: 456 LEQAFIASGSED--SQVYIWHRASCDLIGALPGHSGAVNCVS 495
F+ S D S ++ HRA + H A+NC +
Sbjct: 153 PRHVFVGLPSIDALSALHPDHRALSNF------HDMAINCFA 188
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 486 GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
GH A+N + ++P +P++L S S D +R+W ++
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 223 TLQILQ---GHTDEVWFLQF-SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
T+Q ++ GH + + L+F + L S S D + +W + + V + + GH+
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA 317
V + +++++CG++ +++ W ++S ++ +++
Sbjct: 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 202
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 486 GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
GH A+N + ++P +P++L S S D +R+W ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 223 TLQILQ---GHTDEVWFLQF-SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
T+Q ++ GH + + L+F + L S S D + +W + + V + + GH+
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSS 307
V + +++++CG++ +++ W ++S
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRINS 191
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 486 GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
GH A+N + ++P +P++L S S D +R+W ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 223 TLQILQ---GHTDEVWFLQF-SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
T+Q ++ GH + + L+F + L S S D + +W + + V + + GH+
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSS 307
V + +++++CG++ +++ W ++S
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRINS 191
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 486 GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
GH A+N + ++P +P++L S S D +R+W ++
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 223 TLQILQ---GHTDEVWFLQF-SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
T+Q ++ GH + + L+F + L S S D + +W + + V + + GH+
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 158
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA 317
V + +++++CG++ +++ W ++S ++ +++
Sbjct: 159 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 197
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 106/269 (39%), Gaps = 48/269 (17%)
Query: 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW----DVSSGNCLHVYEKAGLGLVSCGW-H 327
SGH V V + + + TC ++ ++ + D S+ + +V+ W
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 328 PDRKWIFSGAN-DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLL 386
P+ I + A+ DK++ +WE + EC G+R K+ L +D K + K + L
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEEC-SGRRWNKLCTL---NDSKGSLYSVKFAPAHL 123
Query: 387 LDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN-QEIHLWNIEGEVKLVA-KYKGHKR 444
+ A L D L + L ++ W + E K+++ H +
Sbjct: 124 GLKLA---------------CLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQ 168
Query: 445 SRFVIRSC----------FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCV 494
S F + C LEQA I +D ++++ LPGH + +
Sbjct: 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSI 220
Query: 495 SWNPANP---HMLASASDDRTIRIWGLKD 520
SW P+ ++A+ D IRI+ + +
Sbjct: 221 SWAPSIGRWYQLIATGCKDGRIRIFKITE 249
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 486 GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519
GH A+N + ++P +P++L S S D +R+W ++
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 223 TLQILQ---GHTDEVWFLQF-SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278
T+Q ++ GH + + L+F + L S S D + +W + + V + + GH+
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 199
Query: 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA 317
V + +++++CG++ +++ W ++S ++ +++
Sbjct: 200 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 238
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 421 NQEIHLWNIEGEV-KLVAKYKGHKRSRFVI---RSCFGGLEQAFIASGSEDSQVYIWHRA 476
++ I ++ +EGE KL+ GH+ + + FG + +AS S D +V IW
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI----LASCSYDGKVLIWKEE 85
Query: 477 SC--DLIGALPGHSGAVNCVSWNP--ANPHMLASASDDR 511
+ I HS +VN V W P P +L ++SD +
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 454 GGLEQAFIASGSEDSQVYIWHRAS----CDLIGALPGHSGAVNCVSWNPAN--PHMLASA 507
G E +G D+ V IW S L L GHS V V+W+P LAS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225
Query: 508 SDDRTIRIW 516
S DRT IW
Sbjct: 226 SQDRTCIIW 234
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 227 LQGHTDEVWFLQFSHN---GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP--VSC 281
L+GH+D V + +S YLAS S DR+ IIW D G K L + P +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 282 VSWSSDDQQLLTCGVEEAVRRW 303
SWS L G + V W
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW 281
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLK--HKLSGHQKPVSCVS 283
I H + + + GK LA+ S+D++ I+EV+ G T K L+GH+ PV V
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE---GETHKLIDTLTGHEGPVWRVD 60
Query: 284 WSSDD--QQLLTCGVEEAVRRWDVSSGN----CLHVYEKAGLGLVSCGWHP 328
W+ L +C + V W +G +H A + S W P
Sbjct: 61 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN--SVQWAP 109
>pdb|1U1V|A Chain A, Structure And Function Of Phenazine-Biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
Length = 298
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 396 YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455
Y+E +F L R N ++ +Q I W G + K G S F I G
Sbjct: 113 YLETQXGTIAFELERQNGSVIAASXDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNG 172
Query: 456 LEQAFIASGSED--SQVYIWHRASCDLIGALPGHSGAVNCVS 495
F+ S D S ++ HRA + H A+NC +
Sbjct: 173 PRHVFVGLPSIDALSALHPDHRALSNF------HDXAINCFA 208
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 20/128 (15%)
Query: 237 LQFSHN-GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS----CVSWSSDDQQL 291
++FS + G+++ + +DR I D G LK+ + Q+PV +SW D Q+
Sbjct: 212 VEFSPDSGEFVITVGSDRK--ISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWL-DSQKF 267
Query: 292 LTCGVEEAVRRWDVSSGNCLHVY----EKAG---LGLVSCGWHPDRKWIFSGANDKSICM 344
T G + +R WDV++ C+ + ++ G +G+V+ G I S + D ++
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----NGRIISLSLDGTLNF 323
Query: 345 WELGGKEL 352
+ELG E+
Sbjct: 324 YELGHDEV 331
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 421 NQEIHLWNIEGEV-KLVAKYKGHKRSRFVI---RSCFGGLEQAFIASGSEDSQVYIW--H 474
++ I ++ +EGE KL+ GH+ + + FG + +AS S D +V IW
Sbjct: 32 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI----LASCSYDGKVLIWKEE 87
Query: 475 RASCDLIGALPGHSGAVNCVSWNP--ANPHMLASASDDR 511
I HS +VN V W P P +L ++SD +
Sbjct: 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 454 GGLEQAFIASGSEDSQVYIWHRAS----CDLIGALPGHSGAVNCVSWNPAN--PHMLASA 507
G E +G D+ V IW S L L GHS V V+W+P LAS
Sbjct: 168 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227
Query: 508 SDDRTIRIW 516
S DRT IW
Sbjct: 228 SQDRTCIIW 236
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 227 LQGHTDEVWFLQFSHN---GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP--VSC 281
L+GH+D V + +S YLAS S DR+ IIW D G K L + P +
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261
Query: 282 VSWSSDDQQLLTCGVEEAVRRW 303
SWS L G + V W
Sbjct: 262 ASWSLSGNVLALSGGDNKVTLW 283
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLK--HKLSGHQKPVSCVS 283
I H + + + GK LA+ S+D++ I+EV+ G T K L+GH+ PV V
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE---GETHKLIDTLTGHEGPVWRVD 62
Query: 284 WSSDD--QQLLTCGVEEAVRRWDVSSGN----CLHVYEKAGLGLVSCGWHP 328
W+ L +C + V W +G +H A + S W P
Sbjct: 63 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN--SVQWAP 111
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 421 NQEIHLWNIEGEV-KLVAKYKGHKRSRFVI---RSCFGGLEQAFIASGSEDSQVYIW--H 474
++ I ++ +EGE KL+ GH+ + + FG + +AS S D +V IW
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI----LASCSYDGKVMIWKEE 85
Query: 475 RASCDLIGALPGHSGAVNCVSWNP--ANPHMLASASDDR 511
I HS +VN V W P P +L ++SD +
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSW 496
++ G K SR + L + I + D+Q Y+ L L GHS V V+W
Sbjct: 162 GEHNGTKESRKFVTGGADNLVK--IWKYNSDAQTYV-------LESTLEGHSDWVRDVAW 212
Query: 497 NPAN--PHMLASASDDRTIRIW 516
+P +AS S DRT IW
Sbjct: 213 SPTVLLRSYMASVSQDRTCIIW 234
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 227 LQGHTDEVWFLQFSHN---GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP--VSC 281
L+GH+D V + +S Y+AS S DR+ IIW D G K L + P +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 282 VSWSSDDQQLLTCGVEEAVRRW 303
SWS L G + V W
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 421 NQEIHLWNIEGEV-KLVAKYKGHKRSRFVI---RSCFGGLEQAFIASGSEDSQVYIW--H 474
++ I ++ +EGE KL+ GH+ + + FG + +AS S D +V IW
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI----LASCSYDGKVXIWKEE 85
Query: 475 RASCDLIGALPGHSGAVNCVSWNP--ANPHMLASASDDR 511
I HS +VN V W P P +L ++SD +
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSW 496
++ G K SR + L + I + D+Q Y+ L L GHS V V+W
Sbjct: 162 GEHNGTKESRKFVTGGADNLVK--IWKYNSDAQTYV-------LESTLEGHSDWVRDVAW 212
Query: 497 NPAN--PHMLASASDDRTIRIW 516
+P AS S DRT IW
Sbjct: 213 SPTVLLRSYXASVSQDRTCIIW 234
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 421 NQEIHLWNIEGEV-KLVAKYKGHKRSRFVI---RSCFGGLEQAFIASGSEDSQVYIW--H 474
++ I ++ +EGE KL+ GH+ + + FG +AS S D +V IW
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG----TILASCSYDGKVLIWKEE 85
Query: 475 RASCDLIGALPGHSGAVNCVSWNP--ANPHMLASASDDR 511
I HS +VN V W P P +L ++SD +
Sbjct: 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSW 496
++ G K SR + L + I + D+Q Y+ L L GHS V V+W
Sbjct: 162 GEHNGTKESRKFVTGGADNLVK--IWKYNSDAQTYV-------LESTLEGHSDWVRDVAW 212
Query: 497 NPAN--PHMLASASDDRTIRIW 516
+P LAS S DRT IW
Sbjct: 213 SPTVLLRSYLASVSQDRTCIIW 234
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 227 LQGHTDEVWFLQFSHN---GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP--VSC 281
L+GH+D V + +S YLAS S DR+ IIW D G K L + P +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 282 VSWSSDDQQLLTCGVEEAVRRW 303
SWS L G + V W
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW 281
>pdb|2GI7|A Chain A, Crystal Structure Of Human Platelet Glycoprotein Vi (Gpvi)
pdb|2GI7|B Chain B, Crystal Structure Of Human Platelet Glycoprotein Vi (Gpvi)
Length = 184
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 473 WHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDD 510
W+RAS +I HSG C S++ +P++ ++ SD
Sbjct: 141 WYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDP 178
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 368 VTSDGKQIITMCKESALLLLDREAK-VERYIE--EDQTITSFSLSRDNKFLLVNLLNQEI 424
V + +I+T+ ++ + L + K R I+ + T+ + + R + L VN + Q +
Sbjct: 156 VVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQ-L 214
Query: 425 HLWNIE---GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH-RASCDL 480
+W+ E + G + + +Q +A+G +D + IW R
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPN--QQHVVATGGQDGMLSIWDVRQGTMP 272
Query: 481 IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516
+ L H + V ++P+NP L + S+D ++ W
Sbjct: 273 VSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 392 KVERYIEEDQTI---TSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK---RS 445
K+ R IE+ + I T + S ++L +H+WN+E V KGHK +
Sbjct: 57 KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINA 116
Query: 446 RFVIRSCFGGLEQAFIASGSEDSQVYIWH-RASCDLIGALPGHSGAVNCVSWNPA----- 499
I G I +GS D V +W R D + + G W A
Sbjct: 117 IDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176
Query: 500 --NPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGV 533
++ + D+ I+++ L+++ ++ + NGV
Sbjct: 177 NQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGV 212
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 335 SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380
S ND+S E+ ++L C KG+ L + D + GK ++ C+
Sbjct: 134 SYCNDQSTGTLEIVSEDLSCLKGKHVLIVED--IIDTGKTLVKFCE 177
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 335 SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380
S ND+S E+ ++L C KG+ L + D + GK ++ C+
Sbjct: 115 SYCNDQSTGTLEIVSEDLSCLKGKHVLIVED--IIDTGKTLVKFCE 158
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 257 IWEVDLNGGVTLKH--KLSGHQKPVSCVSWSSDDQQLLTCGVEEAV----RRWDVSSGNC 310
++E D NG KH S H K V+CV W+ +++TC + +R D +
Sbjct: 37 LYEQDGNG---WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93
Query: 311 LHVYEKAGLGLVSCGWHP--DRKWIFSGANDKSICMWE 346
L V + W P D+ + SGA S+C +E
Sbjct: 94 L-VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,327,147
Number of Sequences: 62578
Number of extensions: 621003
Number of successful extensions: 2556
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 539
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)