Query 009188
Match_columns 540
No_of_seqs 984 out of 2773
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 21:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 5.9E-87 1.3E-91 587.5 37.6 513 6-521 1-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 9.5E-67 2.1E-71 446.4 26.4 482 20-517 5-507 (508)
3 KOG0271 Notchless-like WD40 re 100.0 2.2E-51 4.8E-56 359.4 28.9 318 207-532 91-453 (480)
4 KOG0271 Notchless-like WD40 re 100.0 1.6E-49 3.5E-54 347.7 25.6 307 196-517 129-479 (480)
5 KOG0273 Beta-transducin family 100.0 2E-48 4.4E-53 349.7 31.5 312 217-533 165-496 (524)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-46 2.5E-51 334.1 23.5 284 227-517 171-458 (459)
7 KOG0286 G-protein beta subunit 100.0 3.7E-43 7.9E-48 297.6 34.1 290 221-517 45-343 (343)
8 KOG0282 mRNA splicing factor [ 100.0 3E-43 6.6E-48 317.7 19.5 297 217-517 200-503 (503)
9 KOG0265 U5 snRNP-specific prot 100.0 1.2E-40 2.6E-45 283.4 28.2 290 222-516 38-335 (338)
10 KOG0279 G protein beta subunit 100.0 1.1E-39 2.3E-44 275.0 32.6 291 223-520 7-314 (315)
11 KOG0315 G-protein beta subunit 100.0 1.5E-39 3.3E-44 269.4 29.7 278 244-530 11-299 (311)
12 KOG0316 Conserved WD40 repeat- 100.0 2.9E-39 6.3E-44 265.6 26.7 291 218-517 4-297 (307)
13 KOG0645 WD40 repeat protein [G 100.0 8.5E-38 1.8E-42 262.4 33.9 287 223-519 6-311 (312)
14 KOG0272 U4/U6 small nuclear ri 100.0 5.8E-40 1.3E-44 291.6 22.1 259 274-536 173-436 (459)
15 KOG0295 WD40 repeat-containing 100.0 1.2E-38 2.6E-43 278.1 24.8 290 221-518 98-405 (406)
16 KOG0285 Pleiotropic regulator 100.0 1.8E-38 3.9E-43 276.2 25.6 295 216-520 136-440 (460)
17 KOG0318 WD40 repeat stress pro 100.0 2.9E-37 6.2E-42 281.6 34.3 311 197-519 163-602 (603)
18 KOG0315 G-protein beta subunit 100.0 2.1E-37 4.6E-42 256.7 29.3 289 196-497 12-309 (311)
19 KOG0266 WD40 repeat-containing 100.0 2.1E-37 4.6E-42 305.5 34.3 293 224-519 151-454 (456)
20 KOG0284 Polyadenylation factor 100.0 2.8E-39 6.2E-44 285.9 18.1 283 229-519 94-380 (464)
21 KOG0279 G protein beta subunit 100.0 5.6E-37 1.2E-41 258.6 28.1 272 196-476 30-313 (315)
22 cd00200 WD40 WD40 domain, foun 100.0 8E-36 1.7E-40 280.7 38.2 285 225-517 3-289 (289)
23 KOG0273 Beta-transducin family 100.0 1.3E-36 2.8E-41 273.9 30.7 277 232-519 236-523 (524)
24 KOG0296 Angio-associated migra 100.0 1.3E-36 2.9E-41 265.5 28.6 300 222-528 55-365 (399)
25 KOG0263 Transcription initiati 100.0 1.1E-37 2.4E-42 298.5 23.8 288 216-522 363-652 (707)
26 KOG0291 WD40-repeat-containing 100.0 2.3E-35 5.1E-40 280.0 33.4 317 200-521 113-510 (893)
27 KOG0319 WD40-repeat-containing 100.0 2.8E-36 6.1E-41 285.9 27.0 305 221-533 94-592 (775)
28 KOG0291 WD40-repeat-containing 100.0 7.5E-35 1.6E-39 276.6 34.6 325 195-527 270-620 (893)
29 KOG0289 mRNA splicing factor [ 100.0 3.1E-36 6.8E-41 268.6 23.6 281 231-518 219-505 (506)
30 KOG0286 G-protein beta subunit 100.0 2.1E-34 4.6E-39 244.5 32.2 267 268-540 47-328 (343)
31 KOG0640 mRNA cleavage stimulat 100.0 4E-35 8.6E-40 250.7 27.6 347 170-519 40-426 (430)
32 PLN00181 protein SPA1-RELATED; 100.0 6.1E-34 1.3E-38 302.4 40.2 285 227-518 479-792 (793)
33 KOG0296 Angio-associated migra 100.0 3.4E-34 7.5E-39 250.4 30.1 305 198-519 80-398 (399)
34 KOG0278 Serine/threonine kinas 100.0 2.1E-35 4.5E-40 245.1 18.3 289 225-524 8-302 (334)
35 KOG0318 WD40 repeat stress pro 100.0 4.2E-33 9E-38 254.6 35.0 330 196-533 22-366 (603)
36 KOG0295 WD40 repeat-containing 100.0 4.8E-35 1E-39 255.6 19.9 267 267-535 99-380 (406)
37 KOG0288 WD40 repeat protein Ti 100.0 4.4E-36 9.5E-41 266.2 13.5 299 212-517 156-459 (459)
38 KOG0263 Transcription initiati 100.0 1.8E-34 3.8E-39 276.7 24.7 208 222-432 442-651 (707)
39 KOG0643 Translation initiation 100.0 2.4E-33 5.1E-38 235.2 28.3 284 226-519 5-317 (327)
40 KOG1407 WD40 repeat protein [F 100.0 3.2E-33 6.9E-38 233.7 27.4 286 225-519 14-311 (313)
41 KOG0281 Beta-TrCP (transducin 100.0 1.9E-35 4.2E-40 256.4 14.4 272 230-523 196-481 (499)
42 KOG0276 Vesicle coat complex C 100.0 5.1E-33 1.1E-37 258.8 28.9 304 225-537 7-316 (794)
43 KOG0285 Pleiotropic regulator 100.0 1E-33 2.2E-38 246.7 22.5 253 266-525 141-395 (460)
44 KOG0276 Vesicle coat complex C 100.0 1.4E-33 3E-38 262.5 24.3 266 269-537 6-275 (794)
45 KOG0313 Microtubule binding pr 100.0 5.9E-33 1.3E-37 243.9 26.5 288 220-519 95-418 (423)
46 KOG0306 WD40-repeat-containing 100.0 2.5E-32 5.4E-37 259.5 32.5 306 221-536 97-639 (888)
47 KOG0283 WD40 repeat-containing 100.0 2.7E-33 5.8E-38 270.9 25.7 249 224-477 259-577 (712)
48 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-31 3.8E-36 230.1 33.4 291 223-523 6-307 (311)
49 KOG0284 Polyadenylation factor 100.0 2E-34 4.3E-39 255.3 15.4 242 275-520 95-338 (464)
50 KOG0319 WD40-repeat-containing 100.0 7E-33 1.5E-37 263.0 25.2 291 221-520 313-620 (775)
51 KOG0292 Vesicle coat complex C 100.0 9.2E-33 2E-37 266.6 26.1 286 226-519 4-321 (1202)
52 KOG0316 Conserved WD40 repeat- 100.0 3.7E-32 7.9E-37 223.9 23.4 257 268-533 9-271 (307)
53 KOG0306 WD40-repeat-containing 100.0 5.9E-32 1.3E-36 256.9 28.0 285 225-520 367-665 (888)
54 KOG0772 Uncharacterized conser 100.0 1.1E-31 2.4E-36 244.6 24.7 299 216-517 152-485 (641)
55 KOG0265 U5 snRNP-specific prot 100.0 2.7E-31 5.8E-36 226.6 25.0 264 267-535 38-312 (338)
56 KOG0645 WD40 repeat protein [G 100.0 8.5E-31 1.8E-35 220.4 26.3 269 196-476 29-311 (312)
57 KOG0266 WD40 repeat-containing 100.0 2.1E-30 4.5E-35 256.0 32.0 256 271-528 153-418 (456)
58 KOG0274 Cdc4 and related F-box 100.0 3.2E-30 6.9E-35 253.2 31.5 286 225-527 201-490 (537)
59 KOG0281 Beta-TrCP (transducin 100.0 2.2E-32 4.7E-37 237.5 13.6 234 275-525 196-434 (499)
60 KOG0277 Peroxisomal targeting 100.0 1.3E-30 2.8E-35 217.3 22.5 280 235-518 12-308 (311)
61 KOG0292 Vesicle coat complex C 100.0 2.7E-30 5.9E-35 249.6 27.8 292 221-519 41-397 (1202)
62 KOG0647 mRNA export protein (c 100.0 1.3E-29 2.8E-34 216.5 27.5 281 225-510 21-315 (347)
63 KOG0973 Histone transcription 100.0 3.1E-30 6.8E-35 256.0 27.3 292 230-523 12-359 (942)
64 cd00200 WD40 WD40 domain, foun 100.0 3E-29 6.5E-34 235.8 32.8 252 270-526 3-256 (289)
65 KOG0282 mRNA splicing factor [ 100.0 2.3E-31 5E-36 241.0 16.4 260 267-531 205-474 (503)
66 KOG0268 Sof1-like rRNA process 100.0 3.2E-31 6.8E-36 231.6 15.3 286 223-521 58-347 (433)
67 KOG0299 U3 snoRNP-associated p 100.0 1.5E-29 3.1E-34 228.1 26.0 293 224-519 135-456 (479)
68 KOG0310 Conserved WD40 repeat- 100.0 2.3E-29 4.9E-34 228.6 25.1 283 230-522 25-312 (487)
69 KOG0300 WD40 repeat-containing 100.0 1.7E-29 3.8E-34 217.0 22.9 309 201-522 123-479 (481)
70 PTZ00421 coronin; Provisional 100.0 2E-28 4.3E-33 240.6 33.4 287 230-521 19-333 (493)
71 PLN00181 protein SPA1-RELATED; 100.0 2.2E-28 4.7E-33 260.0 35.6 265 252-522 457-741 (793)
72 KOG0313 Microtubule binding pr 100.0 3.5E-29 7.6E-34 220.2 23.8 267 195-475 116-417 (423)
73 KOG0305 Anaphase promoting com 100.0 1.6E-28 3.5E-33 232.0 28.0 273 236-521 182-463 (484)
74 KOG0294 WD40 repeat-containing 100.0 3E-28 6.4E-33 209.5 26.9 266 246-521 4-283 (362)
75 KOG0294 WD40 repeat-containing 100.0 3.7E-28 8.1E-33 208.8 26.9 264 222-496 34-305 (362)
76 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-27 3.3E-32 205.9 30.6 262 268-530 6-273 (311)
77 KOG0641 WD40 repeat protein [G 100.0 1.6E-26 3.5E-31 189.5 34.7 292 221-519 23-349 (350)
78 PTZ00420 coronin; Provisional 100.0 3.4E-27 7.3E-32 232.7 35.4 246 249-500 50-318 (568)
79 KOG0283 WD40 repeat-containing 100.0 1.6E-28 3.4E-33 238.0 25.3 247 270-522 260-579 (712)
80 KOG0293 WD40 repeat-containing 100.0 9.2E-29 2E-33 219.7 21.5 261 268-533 216-484 (519)
81 KOG0277 Peroxisomal targeting 100.0 7.1E-29 1.5E-33 206.9 17.6 242 230-475 59-308 (311)
82 KOG1408 WD40 repeat protein [F 100.0 1E-28 2.3E-33 233.5 20.4 323 195-520 329-714 (1080)
83 KOG0301 Phospholipase A2-activ 100.0 9.3E-28 2E-32 226.8 26.7 283 222-520 5-289 (745)
84 KOG1407 WD40 repeat protein [F 100.0 6.5E-28 1.4E-32 202.0 21.5 251 270-526 14-268 (313)
85 PTZ00421 coronin; Provisional 100.0 1.2E-26 2.7E-31 227.9 34.1 213 225-438 69-297 (493)
86 KOG1273 WD40 repeat protein [G 100.0 1.7E-27 3.6E-32 204.7 23.7 294 218-520 12-323 (405)
87 KOG0278 Serine/threonine kinas 100.0 1.5E-28 3.2E-33 204.5 15.3 254 219-481 47-302 (334)
88 KOG0274 Cdc4 and related F-box 100.0 6.7E-27 1.5E-31 229.9 29.7 264 217-496 234-503 (537)
89 KOG1036 Mitotic spindle checkp 100.0 2E-26 4.3E-31 198.0 28.4 270 230-509 12-294 (323)
90 KOG0308 Conserved WD40 repeat- 100.0 2.7E-28 5.8E-33 228.7 18.5 275 241-520 35-328 (735)
91 KOG0275 Conserved WD40 repeat- 100.0 1.8E-28 4E-33 211.3 15.3 271 197-474 228-507 (508)
92 KOG0289 mRNA splicing factor [ 100.0 6.7E-27 1.4E-31 209.3 24.9 437 27-475 26-505 (506)
93 KOG0264 Nucleosome remodeling 100.0 2.1E-27 4.6E-32 214.3 22.0 251 228-520 121-405 (422)
94 KOG0305 Anaphase promoting com 100.0 7.8E-27 1.7E-31 220.6 24.8 265 198-478 191-463 (484)
95 KOG0288 WD40 repeat protein Ti 100.0 8.1E-28 1.8E-32 213.9 16.3 262 198-473 191-458 (459)
96 PTZ00420 coronin; Provisional 100.0 2.4E-25 5.1E-30 219.7 34.2 228 294-523 50-297 (568)
97 KOG0973 Histone transcription 100.0 1.7E-26 3.7E-31 229.7 25.8 253 221-477 59-356 (942)
98 KOG1332 Vesicle coat complex C 100.0 6.9E-27 1.5E-31 194.0 18.4 249 225-476 5-286 (299)
99 KOG1539 WD repeat protein [Gen 100.0 6.3E-25 1.4E-29 211.8 34.6 299 220-526 191-613 (910)
100 KOG2096 WD40 repeat protein [G 100.0 5.6E-26 1.2E-30 195.6 24.4 289 223-517 78-400 (420)
101 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.4E-24 3E-29 206.2 35.8 275 243-527 1-287 (300)
102 KOG2055 WD40 repeat protein [G 99.9 8.2E-26 1.8E-30 204.0 25.1 283 231-519 213-512 (514)
103 KOG0641 WD40 repeat protein [G 99.9 5.8E-25 1.3E-29 180.4 27.4 255 218-476 76-349 (350)
104 KOG0640 mRNA cleavage stimulat 99.9 1.5E-26 3.2E-31 198.4 18.6 254 270-525 106-389 (430)
105 KOG0639 Transducin-like enhanc 99.9 1.8E-26 4E-31 210.0 20.0 282 229-518 417-703 (705)
106 KOG0321 WD40 repeat-containing 99.9 3.3E-26 7.1E-31 214.4 21.9 286 237-523 55-395 (720)
107 KOG0643 Translation initiation 99.9 2.7E-25 5.9E-30 186.9 25.0 235 271-510 5-253 (327)
108 KOG0308 Conserved WD40 repeat- 99.9 1.6E-26 3.6E-31 216.8 19.5 323 195-524 38-398 (735)
109 KOG1274 WD40 repeat protein [G 99.9 8.9E-25 1.9E-29 213.2 29.3 278 228-516 10-297 (933)
110 KOG0299 U3 snoRNP-associated p 99.9 2E-25 4.4E-30 201.5 23.0 245 270-521 136-412 (479)
111 KOG0310 Conserved WD40 repeat- 99.9 7E-26 1.5E-30 206.0 20.2 253 276-534 26-283 (487)
112 KOG0772 Uncharacterized conser 99.9 9E-26 2E-30 206.3 20.5 273 196-474 181-485 (641)
113 KOG0650 WD40 repeat nucleolar 99.9 7E-25 1.5E-29 204.0 26.5 291 217-517 386-733 (733)
114 KOG4283 Transcription-coupled 99.9 5.4E-25 1.2E-29 187.6 23.2 285 228-518 40-364 (397)
115 KOG1036 Mitotic spindle checkp 99.9 1.3E-24 2.9E-29 186.8 25.7 258 274-539 11-286 (323)
116 KOG2106 Uncharacterized conser 99.9 5.5E-24 1.2E-28 194.2 30.2 283 224-518 238-625 (626)
117 KOG0647 mRNA export protein (c 99.9 6.4E-25 1.4E-29 187.9 22.4 258 273-536 24-299 (347)
118 KOG0300 WD40 repeat-containing 99.9 6E-25 1.3E-29 189.2 20.7 258 218-478 177-478 (481)
119 KOG0269 WD40 repeat-containing 99.9 2.4E-25 5.1E-30 213.1 19.8 290 232-526 40-347 (839)
120 KOG0646 WD40 repeat protein [G 99.9 9.1E-25 2E-29 197.7 22.2 270 249-528 13-316 (476)
121 KOG2445 Nuclear pore complex c 99.9 7.3E-24 1.6E-28 182.0 26.2 263 227-519 9-318 (361)
122 KOG0646 WD40 repeat protein [G 99.9 1E-24 2.3E-29 197.4 22.1 273 244-520 51-351 (476)
123 KOG1408 WD40 repeat protein [F 99.9 4.7E-24 1E-28 202.2 26.0 302 234-537 327-693 (1080)
124 KOG2048 WD40 repeat protein [G 99.9 5.3E-23 1.1E-27 194.5 32.1 283 227-520 21-320 (691)
125 KOG1539 WD repeat protein [Gen 99.9 1.5E-23 3.2E-28 202.5 28.6 306 202-520 265-649 (910)
126 KOG0269 WD40 repeat-containing 99.9 1.8E-25 3.9E-30 214.0 15.3 244 233-478 89-342 (839)
127 KOG1063 RNA polymerase II elon 99.9 1.1E-23 2.4E-28 199.4 25.7 299 220-522 180-605 (764)
128 KOG2106 Uncharacterized conser 99.9 3.3E-22 7.2E-27 182.6 34.0 292 219-520 188-522 (626)
129 KOG1063 RNA polymerase II elon 99.9 2.4E-23 5.2E-28 197.1 26.0 330 190-519 274-699 (764)
130 KOG4328 WD40 protein [Function 99.9 1.4E-23 3E-28 189.5 22.8 298 222-520 177-496 (498)
131 KOG0268 Sof1-like rRNA process 99.9 9.5E-25 2.1E-29 191.3 14.4 245 268-524 58-307 (433)
132 KOG0301 Phospholipase A2-activ 99.9 1.5E-23 3.2E-28 198.6 22.1 252 266-531 4-259 (745)
133 KOG2919 Guanine nucleotide-bin 99.9 4.9E-23 1.1E-27 178.0 23.4 273 235-510 53-361 (406)
134 KOG0270 WD40 repeat-containing 99.9 1.1E-23 2.5E-28 189.5 19.4 243 242-526 191-456 (463)
135 KOG1332 Vesicle coat complex C 99.9 9.1E-24 2E-28 175.6 16.9 233 195-432 24-288 (299)
136 KOG1009 Chromatin assembly com 99.9 1.5E-22 3.3E-27 180.3 25.8 292 231-524 13-377 (434)
137 KOG1274 WD40 repeat protein [G 99.9 9E-23 2E-27 199.3 26.5 244 273-520 10-263 (933)
138 KOG1445 Tumor-specific antigen 99.9 2.3E-23 5.1E-28 195.0 19.6 142 380-524 601-755 (1012)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-21 7.4E-26 182.8 34.6 280 199-498 6-300 (300)
140 KOG2048 WD40 repeat protein [G 99.9 1.2E-21 2.6E-26 185.4 29.9 247 275-523 24-279 (691)
141 KOG0639 Transducin-like enhanc 99.9 1.9E-23 4E-28 190.6 17.1 239 230-475 464-703 (705)
142 KOG0264 Nucleosome remodeling 99.9 3E-23 6.5E-28 187.6 18.2 242 190-431 132-405 (422)
143 KOG0307 Vesicle coat complex C 99.9 5E-24 1.1E-28 213.2 14.4 284 236-522 11-330 (1049)
144 KOG0321 WD40 repeat-containing 99.9 9.9E-23 2.1E-27 191.2 19.8 278 197-478 67-393 (720)
145 KOG1034 Transcriptional repres 99.9 8.8E-22 1.9E-26 170.7 23.6 290 225-519 32-383 (385)
146 KOG0267 Microtubule severing p 99.9 3.8E-24 8.3E-29 203.3 9.7 254 243-510 4-259 (825)
147 KOG0267 Microtubule severing p 99.9 9.7E-24 2.1E-28 200.6 10.6 237 225-468 22-260 (825)
148 KOG1538 Uncharacterized conser 99.9 9E-22 2E-26 185.5 22.2 274 233-522 14-296 (1081)
149 KOG4227 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 171.7 23.1 293 224-519 49-387 (609)
150 KOG2055 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 177.6 19.4 272 197-476 228-512 (514)
151 KOG1273 WD40 repeat protein [G 99.9 3.4E-21 7.4E-26 166.1 19.6 247 279-529 26-290 (405)
152 KOG4378 Nuclear protein COP1 [ 99.9 1.4E-21 3.1E-26 178.1 18.1 260 233-499 36-304 (673)
153 KOG0322 G-protein beta subunit 99.9 6.2E-22 1.4E-26 166.5 14.3 288 219-518 2-322 (323)
154 KOG2096 WD40 repeat protein [G 99.9 4.1E-20 8.9E-25 159.7 24.1 250 271-526 81-367 (420)
155 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-21 2.8E-26 181.6 15.9 261 225-526 288-568 (577)
156 KOG4328 WD40 protein [Function 99.9 7.9E-21 1.7E-25 171.9 20.3 252 268-524 178-455 (498)
157 KOG4283 Transcription-coupled 99.9 2.5E-20 5.5E-25 159.3 21.7 273 194-475 56-364 (397)
158 KOG4378 Nuclear protein COP1 [ 99.9 9.1E-21 2E-25 173.0 20.0 272 253-533 12-296 (673)
159 KOG1334 WD40 repeat protein [G 99.9 1.8E-21 3.9E-26 177.3 15.3 297 223-522 134-469 (559)
160 KOG0302 Ribosome Assembly prot 99.9 1.2E-20 2.6E-25 166.6 19.2 211 270-520 145-379 (440)
161 KOG0302 Ribosome Assembly prot 99.9 3.1E-20 6.8E-25 164.0 20.5 206 226-431 146-379 (440)
162 KOG1310 WD40 repeat protein [G 99.9 2.1E-20 4.5E-25 172.7 20.1 206 224-431 43-304 (758)
163 KOG1538 Uncharacterized conser 99.9 1.1E-19 2.4E-24 171.6 25.1 246 218-476 40-293 (1081)
164 KOG0650 WD40 repeat nucleolar 99.9 4.3E-20 9.4E-25 172.4 21.2 242 268-517 392-678 (733)
165 KOG1963 WD40 repeat protein [G 99.9 5.3E-19 1.1E-23 172.9 29.5 290 228-521 202-540 (792)
166 KOG0303 Actin-binding protein 99.9 6.4E-20 1.4E-24 163.0 20.3 212 225-437 75-301 (472)
167 KOG1188 WD40 repeat protein [G 99.9 5E-20 1.1E-24 160.9 19.3 270 244-519 41-346 (376)
168 KOG1007 WD repeat protein TSSC 99.9 1.1E-19 2.4E-24 155.0 20.4 266 251-520 38-362 (370)
169 COG2319 FOG: WD40 repeat [Gene 99.9 1.1E-17 2.5E-22 166.9 38.6 292 225-522 59-362 (466)
170 KOG1034 Transcriptional repres 99.8 1.6E-20 3.5E-25 163.0 13.8 243 229-476 87-383 (385)
171 COG2319 FOG: WD40 repeat [Gene 99.8 3.6E-17 7.8E-22 163.3 39.5 289 221-520 145-443 (466)
172 KOG1009 Chromatin assembly com 99.8 4.3E-19 9.3E-24 158.5 21.7 282 196-481 28-377 (434)
173 KOG0644 Uncharacterized conser 99.8 3.9E-21 8.3E-26 185.7 9.4 287 223-524 182-473 (1113)
174 PRK11028 6-phosphogluconolacto 99.8 2.1E-17 4.6E-22 158.3 34.6 273 247-523 6-310 (330)
175 KOG0270 WD40 repeat-containing 99.8 3.9E-19 8.4E-24 160.5 20.6 242 236-523 130-408 (463)
176 KOG0307 Vesicle coat complex C 99.8 2.1E-20 4.6E-25 187.5 12.8 246 231-479 64-330 (1049)
177 KOG1240 Protein kinase contain 99.8 3.2E-18 7E-23 172.5 27.1 300 217-517 1034-1431(1431)
178 KOG1517 Guanine nucleotide bin 99.8 2.3E-18 5E-23 170.9 24.7 289 229-523 1062-1385(1387)
179 KOG2445 Nuclear pore complex c 99.8 3.8E-18 8.2E-23 147.1 22.6 216 273-520 10-257 (361)
180 KOG0290 Conserved WD40 repeat- 99.8 3.1E-18 6.7E-23 146.4 20.2 250 233-521 46-320 (364)
181 KOG1523 Actin-related protein 99.8 1.2E-17 2.7E-22 144.8 24.1 207 227-433 6-239 (361)
182 KOG0644 Uncharacterized conser 99.8 5.2E-20 1.1E-24 178.0 8.7 246 269-527 183-434 (1113)
183 KOG0649 WD40 repeat protein [G 99.8 2.9E-17 6.2E-22 137.0 23.2 271 232-516 11-313 (325)
184 KOG0303 Actin-binding protein 99.8 1E-17 2.2E-22 149.2 21.3 227 271-500 76-321 (472)
185 KOG2919 Guanine nucleotide-bin 99.8 3E-17 6.5E-22 142.5 22.6 267 194-467 61-361 (406)
186 KOG1007 WD repeat protein TSSC 99.8 1.2E-17 2.5E-22 142.8 18.5 248 225-476 57-361 (370)
187 KOG1587 Cytoplasmic dynein int 99.8 1.2E-16 2.7E-21 156.3 27.1 262 253-520 222-517 (555)
188 KOG1963 WD40 repeat protein [G 99.8 6.1E-16 1.3E-20 151.7 29.4 200 227-430 12-322 (792)
189 PRK11028 6-phosphogluconolacto 99.8 9.6E-16 2.1E-20 146.9 29.9 265 201-476 9-304 (330)
190 KOG1445 Tumor-specific antigen 99.8 1.8E-17 4E-22 155.9 16.2 260 239-500 587-871 (1012)
191 PRK01742 tolB translocation pr 99.8 1.6E-16 3.5E-21 156.9 23.3 233 252-499 183-426 (429)
192 KOG0290 Conserved WD40 repeat- 99.8 1.2E-16 2.5E-21 136.9 18.5 240 228-509 93-356 (364)
193 KOG4497 Uncharacterized conser 99.8 2.7E-16 5.9E-21 136.9 21.0 282 236-525 13-397 (447)
194 KOG4227 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 142.4 18.9 249 269-520 49-323 (609)
195 KOG1587 Cytoplasmic dynein int 99.8 1.9E-16 4.1E-21 155.0 22.6 245 230-477 241-517 (555)
196 KOG0771 Prolactin regulatory e 99.7 3.1E-17 6.7E-22 147.8 14.3 193 235-431 148-355 (398)
197 KOG1524 WD40 repeat-containing 99.7 9.4E-17 2E-21 148.4 17.7 261 229-515 12-282 (737)
198 PF02239 Cytochrom_D1: Cytochr 99.7 5.9E-15 1.3E-19 140.8 30.7 299 220-527 25-355 (369)
199 KOG2139 WD40 repeat protein [G 99.7 3.5E-15 7.6E-20 131.8 26.0 273 192-475 108-430 (445)
200 KOG1188 WD40 repeat protein [G 99.7 1.3E-16 2.8E-21 139.7 16.2 266 200-475 46-345 (376)
201 KOG0649 WD40 repeat protein [G 99.7 6E-15 1.3E-19 123.3 24.9 229 196-432 24-276 (325)
202 KOG0642 Cell-cycle nuclear pro 99.7 5.4E-17 1.2E-21 151.2 13.3 239 193-432 305-563 (577)
203 KOG0771 Prolactin regulatory e 99.7 1.7E-15 3.8E-20 136.7 22.5 194 322-520 148-355 (398)
204 KOG1240 Protein kinase contain 99.7 3.5E-15 7.5E-20 151.0 26.4 256 267-524 1039-1339(1431)
205 KOG1310 WD40 repeat protein [G 99.7 1E-16 2.2E-21 148.7 14.0 239 269-525 43-309 (758)
206 PRK03629 tolB translocation pr 99.7 1.6E-14 3.4E-19 142.4 28.8 232 254-498 180-427 (429)
207 KOG1517 Guanine nucleotide bin 99.7 4.1E-15 8.9E-20 148.2 22.4 247 275-524 1063-1338(1387)
208 KOG1272 WD40-repeat-containing 99.7 2.4E-16 5.3E-21 143.3 12.7 270 232-516 130-406 (545)
209 KOG3881 Uncharacterized conser 99.7 7.2E-15 1.6E-19 131.2 21.3 253 275-535 54-339 (412)
210 KOG2110 Uncharacterized conser 99.7 4.1E-13 8.8E-18 119.4 32.1 235 230-476 4-248 (391)
211 KOG1524 WD40 repeat-containing 99.7 1.5E-15 3.3E-20 140.5 17.5 249 274-533 12-269 (737)
212 KOG2321 WD40 repeat protein [G 99.7 1.8E-14 3.9E-19 134.7 24.4 284 230-525 50-349 (703)
213 PRK01742 tolB translocation pr 99.7 4.3E-15 9.4E-20 146.8 21.6 213 223-445 195-417 (429)
214 KOG2110 Uncharacterized conser 99.7 7.3E-14 1.6E-18 124.0 26.3 235 276-522 5-251 (391)
215 KOG2139 WD40 repeat protein [G 99.7 2E-14 4.4E-19 127.0 20.8 191 233-429 100-308 (445)
216 KOG2394 WD40 protein DMR-N9 [G 99.7 9.7E-15 2.1E-19 135.4 19.6 276 233-525 125-458 (636)
217 PRK02889 tolB translocation pr 99.6 2.2E-13 4.7E-18 134.5 27.9 233 254-499 177-425 (427)
218 KOG1272 WD40-repeat-containing 99.6 1E-15 2.3E-20 139.3 10.4 230 277-518 130-361 (545)
219 PRK04922 tolB translocation pr 99.6 9.1E-14 2E-18 137.7 25.3 233 253-498 184-432 (433)
220 PF02239 Cytochrom_D1: Cytochr 99.6 4.1E-13 8.8E-18 128.3 28.5 273 247-526 10-309 (369)
221 PRK05137 tolB translocation pr 99.6 4.7E-13 1E-17 132.8 29.5 233 253-499 182-433 (435)
222 KOG1523 Actin-related protein 99.6 1.9E-13 4E-18 119.2 22.7 232 275-511 9-270 (361)
223 KOG1334 WD40 repeat protein [G 99.6 3.7E-15 8E-20 136.6 12.8 269 267-536 133-441 (559)
224 PRK05137 tolB translocation pr 99.6 1.8E-13 3.9E-18 135.8 25.8 206 221-432 191-414 (435)
225 PRK03629 tolB translocation pr 99.6 2.1E-13 4.6E-18 134.4 25.9 213 224-444 191-418 (429)
226 KOG2111 Uncharacterized conser 99.6 5.8E-13 1.2E-17 116.1 24.2 233 279-522 8-259 (346)
227 KOG1354 Serine/threonine prote 99.6 2.8E-13 6E-18 119.2 22.1 248 230-479 24-362 (433)
228 KOG1409 Uncharacterized conser 99.6 1.2E-13 2.5E-18 121.6 18.8 250 219-476 12-270 (404)
229 KOG2321 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 127.1 21.9 262 274-540 49-327 (703)
230 PF10282 Lactonase: Lactonase, 99.6 2.3E-11 5E-16 116.6 35.5 279 246-526 2-331 (345)
231 KOG3881 Uncharacterized conser 99.6 4.4E-13 9.6E-18 120.0 20.9 261 231-499 55-342 (412)
232 PF08662 eIF2A: Eukaryotic tra 99.6 6E-13 1.3E-17 115.4 21.0 153 235-393 9-182 (194)
233 PRK04922 tolB translocation pr 99.6 7.3E-13 1.6E-17 131.3 24.4 204 222-431 194-412 (433)
234 KOG2315 Predicted translation 99.6 2.1E-12 4.5E-17 121.1 25.5 276 231-524 34-395 (566)
235 KOG2394 WD40 protein DMR-N9 [G 99.6 6E-14 1.3E-18 130.3 14.2 140 231-370 219-384 (636)
236 PRK02889 tolB translocation pr 99.6 1E-12 2.2E-17 129.7 23.9 203 222-430 186-403 (427)
237 PF10282 Lactonase: Lactonase, 99.6 7.1E-11 1.5E-15 113.3 35.8 264 230-496 35-345 (345)
238 KOG2111 Uncharacterized conser 99.6 2.9E-11 6.3E-16 105.7 29.4 235 233-477 7-257 (346)
239 KOG2314 Translation initiation 99.6 1.3E-12 2.9E-17 121.9 22.5 275 234-522 213-576 (698)
240 KOG0322 G-protein beta subunit 99.6 1.3E-13 2.9E-18 116.8 14.4 266 192-475 23-322 (323)
241 PF08662 eIF2A: Eukaryotic tra 99.6 8.8E-13 1.9E-17 114.4 20.0 150 280-432 9-181 (194)
242 KOG4497 Uncharacterized conser 99.5 3.4E-12 7.5E-17 111.7 22.2 270 231-512 48-425 (447)
243 TIGR02800 propeller_TolB tol-p 99.5 2E-11 4.3E-16 121.4 28.2 232 253-497 170-417 (417)
244 KOG2041 WD40 repeat protein [G 99.5 4E-12 8.6E-17 122.2 21.3 263 231-500 14-320 (1189)
245 PRK04792 tolB translocation pr 99.5 2E-11 4.3E-16 121.0 27.2 232 254-498 199-446 (448)
246 PRK00178 tolB translocation pr 99.5 2.9E-11 6.3E-16 120.3 28.3 233 254-499 180-428 (430)
247 KOG1832 HIV-1 Vpr-binding prot 99.5 6.1E-14 1.3E-18 137.4 7.7 296 179-539 1013-1313(1516)
248 TIGR02800 propeller_TolB tol-p 99.5 1.7E-11 3.6E-16 122.0 24.9 201 224-430 182-397 (417)
249 COG5354 Uncharacterized protei 99.5 7.9E-11 1.7E-15 109.3 26.8 281 227-523 28-399 (561)
250 TIGR02658 TTQ_MADH_Hv methylam 99.5 1E-09 2.2E-14 102.5 33.7 265 253-527 27-338 (352)
251 KOG0974 WD-repeat protein WDR6 99.5 3.2E-11 7E-16 121.2 25.1 150 237-391 139-289 (967)
252 PRK00178 tolB translocation pr 99.4 4.8E-11 1E-15 118.8 25.5 202 224-431 191-407 (430)
253 COG2706 3-carboxymuconate cycl 99.4 1.3E-09 2.8E-14 97.7 31.0 274 252-525 15-329 (346)
254 PF04762 IKI3: IKI3 family; I 99.4 1.3E-09 2.7E-14 115.9 34.3 287 230-521 74-458 (928)
255 PRK04792 tolB translocation pr 99.4 9.8E-11 2.1E-15 116.1 24.4 201 225-431 211-426 (448)
256 COG2706 3-carboxymuconate cycl 99.4 4.4E-09 9.5E-14 94.4 31.8 271 227-497 35-345 (346)
257 KOG4547 WD40 repeat-containing 99.4 3E-10 6.5E-15 107.7 24.3 187 240-431 2-221 (541)
258 COG4946 Uncharacterized protei 99.4 2.3E-09 5.1E-14 98.8 29.1 171 242-419 331-507 (668)
259 KOG1409 Uncharacterized conser 99.4 2.8E-11 6.1E-16 106.8 15.8 253 266-524 14-275 (404)
260 PRK01029 tolB translocation pr 99.4 7.9E-10 1.7E-14 108.7 27.5 236 254-500 166-426 (428)
261 KOG1354 Serine/threonine prote 99.4 7.8E-11 1.7E-15 104.0 17.9 245 276-523 25-363 (433)
262 KOG0280 Uncharacterized conser 99.4 9.4E-10 2E-14 95.3 23.8 268 252-523 45-337 (339)
263 KOG1064 RAVE (regulator of V-A 99.3 1.4E-11 3.1E-16 129.7 14.8 221 273-512 2205-2439(2439)
264 KOG0974 WD-repeat protein WDR6 99.3 7.9E-11 1.7E-15 118.4 19.2 277 231-524 7-293 (967)
265 PRK01029 tolB translocation pr 99.3 5.7E-10 1.2E-14 109.7 25.1 203 225-432 178-405 (428)
266 KOG4547 WD40 repeat-containing 99.3 2.2E-10 4.7E-15 108.6 20.7 207 286-520 3-221 (541)
267 KOG1912 WD40 repeat protein [G 99.3 1.4E-10 3.1E-15 112.8 18.6 286 233-525 17-370 (1062)
268 COG5354 Uncharacterized protei 99.3 1.8E-09 3.9E-14 100.5 24.8 279 213-510 110-420 (561)
269 KOG4190 Uncharacterized conser 99.3 2.8E-11 6E-16 113.2 12.3 284 222-515 726-1032(1034)
270 KOG1912 WD40 repeat protein [G 99.3 7.4E-10 1.6E-14 108.0 21.3 311 216-531 40-467 (1062)
271 KOG2041 WD40 repeat protein [G 99.3 6.1E-11 1.3E-15 114.3 13.5 233 275-510 13-279 (1189)
272 PF08450 SGL: SMP-30/Gluconola 99.3 5.3E-08 1.1E-12 89.0 32.3 222 281-508 4-245 (246)
273 TIGR03300 assembly_YfgL outer 99.3 1E-08 2.3E-13 100.3 29.3 267 242-528 64-347 (377)
274 TIGR03300 assembly_YfgL outer 99.3 1.1E-08 2.3E-13 100.2 29.0 258 242-516 104-376 (377)
275 KOG0309 Conserved WD40 repeat- 99.3 7.4E-11 1.6E-15 114.1 13.2 283 231-520 24-340 (1081)
276 PLN02919 haloacid dehalogenase 99.2 1.3E-08 2.8E-13 110.4 31.5 241 280-523 571-892 (1057)
277 PLN02919 haloacid dehalogenase 99.2 5.3E-08 1.2E-12 105.7 35.0 239 235-480 571-892 (1057)
278 KOG0280 Uncharacterized conser 99.2 3.3E-09 7.2E-14 92.0 18.6 224 298-524 46-289 (339)
279 COG4946 Uncharacterized protei 99.2 2.4E-08 5.2E-13 92.3 25.2 148 227-379 355-507 (668)
280 TIGR02658 TTQ_MADH_Hv methylam 99.2 2E-07 4.3E-12 87.4 31.7 251 221-485 37-339 (352)
281 KOG1064 RAVE (regulator of V-A 99.2 1.7E-10 3.6E-15 121.9 12.4 220 289-526 2181-2405(2439)
282 PRK04043 tolB translocation pr 99.2 4.9E-08 1.1E-12 95.5 27.9 192 233-432 189-402 (419)
283 KOG2659 LisH motif-containing 99.2 1.2E-10 2.6E-15 98.7 8.0 178 7-187 11-199 (228)
284 PF04762 IKI3: IKI3 family; I 99.1 1.6E-07 3.5E-12 100.0 33.0 284 232-518 22-378 (928)
285 PRK04043 tolB translocation pr 99.1 1.5E-07 3.3E-12 92.0 30.1 207 278-494 189-417 (419)
286 COG5170 CDC55 Serine/threonine 99.1 3.8E-09 8.2E-14 92.3 15.8 244 230-475 25-366 (460)
287 KOG2315 Predicted translation 99.1 2.4E-08 5.2E-13 94.3 22.2 199 230-432 164-392 (566)
288 PF15492 Nbas_N: Neuroblastoma 99.1 1.4E-07 3E-12 82.4 25.1 233 282-528 3-268 (282)
289 KOG0882 Cyclophilin-related pe 99.1 2.4E-09 5.2E-14 98.1 13.9 251 230-484 8-313 (558)
290 KOG4190 Uncharacterized conser 99.1 5.4E-10 1.2E-14 104.8 9.1 239 269-517 728-986 (1034)
291 KOG4532 WD40-like repeat conta 99.0 1E-07 2.2E-12 81.8 21.0 190 243-434 84-286 (344)
292 KOG4532 WD40-like repeat conta 99.0 4.2E-08 9E-13 84.2 18.3 220 296-525 50-288 (344)
293 PF15492 Nbas_N: Neuroblastoma 99.0 7E-07 1.5E-11 78.1 24.7 238 236-488 2-271 (282)
294 KOG2314 Translation initiation 99.0 1.4E-07 3E-12 89.1 20.9 258 233-501 251-595 (698)
295 PF13360 PQQ_2: PQQ-like domai 99.0 3.9E-07 8.5E-12 83.0 23.3 220 297-525 2-236 (238)
296 PRK11138 outer membrane biogen 98.9 6E-07 1.3E-11 88.2 25.9 261 242-518 119-393 (394)
297 KOG2695 WD40 repeat protein [G 98.9 3.8E-09 8.2E-14 93.7 8.8 170 324-497 217-401 (425)
298 PF08450 SGL: SMP-30/Gluconola 98.9 7.1E-06 1.5E-10 75.0 30.8 214 236-463 4-242 (246)
299 KOG3914 WD repeat protein WDR4 98.9 2.1E-08 4.5E-13 91.0 13.3 158 233-393 64-226 (390)
300 KOG1645 RING-finger-containing 98.9 2.1E-07 4.5E-12 84.6 18.1 246 270-520 187-462 (463)
301 PRK11138 outer membrane biogen 98.9 1.8E-06 3.8E-11 84.9 25.6 265 243-527 69-361 (394)
302 KOG3914 WD repeat protein WDR4 98.9 6.3E-08 1.4E-12 88.0 13.7 158 363-525 65-229 (390)
303 KOG0309 Conserved WD40 repeat- 98.8 5.1E-08 1.1E-12 95.0 13.5 244 234-477 70-340 (1081)
304 KOG4714 Nucleoporin [Nuclear s 98.8 4E-08 8.7E-13 83.9 11.2 165 225-391 83-255 (319)
305 COG5170 CDC55 Serine/threonine 98.8 5.2E-08 1.1E-12 85.3 12.1 240 276-518 26-366 (460)
306 PF00400 WD40: WD domain, G-be 98.8 1.2E-08 2.7E-13 62.9 6.2 38 222-259 2-39 (39)
307 PF13360 PQQ_2: PQQ-like domai 98.8 2.6E-06 5.6E-11 77.6 24.0 217 252-482 2-236 (238)
308 KOG4714 Nucleoporin [Nuclear s 98.8 7.2E-08 1.6E-12 82.4 12.2 232 279-517 39-316 (319)
309 KOG4649 PQQ (pyrrolo-quinoline 98.8 8.2E-06 1.8E-10 70.2 24.3 263 242-521 62-353 (354)
310 KOG1920 IkappaB kinase complex 98.8 3.6E-06 7.8E-11 87.3 26.3 197 231-432 68-324 (1265)
311 KOG2695 WD40 repeat protein [G 98.8 2.4E-08 5.2E-13 88.7 9.2 153 376-532 228-389 (425)
312 PF07433 DUF1513: Protein of u 98.8 3.9E-06 8.4E-11 75.9 22.8 192 223-425 48-280 (305)
313 KOG1920 IkappaB kinase complex 98.8 6E-06 1.3E-10 85.7 26.5 238 275-518 67-364 (1265)
314 KOG3617 WD40 and TPR repeat-co 98.8 2.4E-07 5.2E-12 91.8 15.1 109 235-348 19-131 (1416)
315 PF00400 WD40: WD domain, G-be 98.7 2.6E-08 5.6E-13 61.4 5.3 39 478-517 1-39 (39)
316 KOG2114 Vacuolar assembly/sort 98.7 4.6E-06 1E-10 83.4 23.2 205 283-492 30-260 (933)
317 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.5E-05 3.3E-10 76.9 26.4 264 240-510 1-349 (353)
318 KOG2114 Vacuolar assembly/sort 98.7 2.4E-06 5.3E-11 85.3 20.8 204 233-444 27-257 (933)
319 PF07433 DUF1513: Protein of u 98.7 2.2E-05 4.7E-10 71.2 24.8 225 279-530 7-258 (305)
320 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.8E-13 100.9 4.3 220 221-501 1091-1314(1516)
321 KOG0882 Cyclophilin-related pe 98.6 3.5E-07 7.6E-12 84.3 11.3 251 274-527 7-313 (558)
322 PF08513 LisH: LisH; InterPro 98.6 8.4E-08 1.8E-12 52.4 3.7 27 23-49 1-27 (27)
323 KOG3621 WD40 repeat-containing 98.6 1.4E-05 3.1E-10 78.3 20.8 118 230-349 32-155 (726)
324 KOG1275 PAB-dependent poly(A) 98.6 2.6E-06 5.6E-11 85.5 15.9 180 242-429 146-341 (1118)
325 PF11768 DUF3312: Protein of u 98.5 0.00085 1.9E-08 65.3 30.9 113 320-432 207-331 (545)
326 KOG1645 RING-finger-containing 98.5 5.3E-06 1.2E-10 75.7 15.1 245 222-476 184-461 (463)
327 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.0007 1.5E-08 58.7 26.5 178 243-428 23-205 (354)
328 PF14583 Pectate_lyase22: Olig 98.5 0.00088 1.9E-08 62.9 29.2 273 238-519 42-381 (386)
329 PF06433 Me-amine-dh_H: Methyl 98.5 0.00099 2.1E-08 61.4 28.7 266 253-528 17-329 (342)
330 cd00216 PQQ_DH Dehydrogenases 98.5 0.00039 8.4E-09 70.2 29.2 275 243-533 61-438 (488)
331 KOG2066 Vacuolar assembly/sort 98.4 1.1E-05 2.4E-10 80.2 16.9 182 319-521 40-235 (846)
332 KOG2066 Vacuolar assembly/sort 98.4 1.1E-05 2.3E-10 80.3 16.7 180 231-430 39-233 (846)
333 KOG0396 Uncharacterized conser 98.4 1.7E-06 3.6E-11 78.1 9.2 122 21-142 114-241 (389)
334 PF00930 DPPIV_N: Dipeptidyl p 98.4 8.7E-05 1.9E-09 71.7 21.4 238 285-525 1-322 (353)
335 KOG1275 PAB-dependent poly(A) 98.3 1.7E-05 3.6E-10 80.0 14.8 183 287-474 146-340 (1118)
336 PF04053 Coatomer_WDAD: Coatom 98.3 0.00019 4.1E-09 70.3 22.1 225 224-476 25-262 (443)
337 smart00667 LisH Lissencephaly 98.3 1E-06 2.2E-11 52.2 4.0 32 21-52 2-33 (34)
338 PRK02888 nitrous-oxide reducta 98.3 0.00064 1.4E-08 67.8 25.1 183 284-477 200-405 (635)
339 PF06433 Me-amine-dh_H: Methyl 98.3 0.0016 3.5E-08 60.1 25.8 242 236-486 40-330 (342)
340 KOG1008 Uncharacterized conser 98.3 6.5E-07 1.4E-11 86.3 4.0 241 277-519 57-335 (783)
341 COG3391 Uncharacterized conser 98.3 0.0039 8.5E-08 60.7 30.3 259 233-499 32-309 (381)
342 KOG1008 Uncharacterized conser 98.2 3.6E-07 7.8E-12 88.0 1.2 196 232-430 57-275 (783)
343 PF00780 CNH: CNH domain; Int 98.2 0.0017 3.6E-08 60.5 25.6 236 286-538 5-274 (275)
344 KOG3617 WD40 and TPR repeat-co 98.2 6.1E-05 1.3E-09 75.4 16.1 228 233-466 61-375 (1416)
345 COG0823 TolB Periplasmic compo 98.2 0.00024 5.3E-09 69.3 20.2 193 223-421 184-390 (425)
346 PF11768 DUF3312: Protein of u 98.2 2.3E-05 4.9E-10 75.9 12.4 116 234-351 208-332 (545)
347 cd00216 PQQ_DH Dehydrogenases 98.2 0.0026 5.7E-08 64.2 27.9 235 244-486 111-434 (488)
348 PRK02888 nitrous-oxide reducta 98.2 0.00062 1.3E-08 67.9 22.1 216 239-465 200-450 (635)
349 PF02897 Peptidase_S9_N: Proly 98.2 0.01 2.2E-07 59.0 32.5 244 279-525 126-410 (414)
350 PF14583 Pectate_lyase22: Olig 98.1 0.0025 5.4E-08 60.0 24.4 237 283-523 42-332 (386)
351 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0091 2E-07 58.6 29.5 241 254-526 62-321 (410)
352 PF03178 CPSF_A: CPSF A subuni 98.1 0.0027 5.7E-08 60.6 25.0 214 298-516 2-262 (321)
353 PF08596 Lgl_C: Lethal giant l 98.1 0.00055 1.2E-08 66.2 20.0 253 233-509 3-326 (395)
354 smart00668 CTLH C-terminal to 98.1 1.8E-06 4E-11 58.5 2.1 53 57-109 4-56 (58)
355 PF06977 SdiA-regulated: SdiA- 98.1 0.0048 1E-07 55.4 24.1 201 313-516 16-247 (248)
356 COG0823 TolB Periplasmic compo 98.1 0.001 2.2E-08 65.0 21.5 159 272-432 188-360 (425)
357 PF10607 CLTH: CTLH/CRA C-term 98.1 4.2E-06 9.2E-11 69.2 4.3 133 57-189 4-138 (145)
358 PF06977 SdiA-regulated: SdiA- 98.0 0.0088 1.9E-07 53.7 24.8 199 225-427 15-247 (248)
359 COG3391 Uncharacterized conser 98.0 0.018 3.9E-07 56.1 29.5 243 278-526 32-290 (381)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.025 5.4E-07 57.5 30.6 185 243-432 69-335 (527)
361 KOG3621 WD40 repeat-containing 98.0 0.00088 1.9E-08 66.2 18.3 144 275-420 32-188 (726)
362 PF00780 CNH: CNH domain; Int 98.0 0.015 3.3E-07 54.0 26.6 226 241-487 5-266 (275)
363 PF04841 Vps16_N: Vps16, N-ter 97.9 0.021 4.5E-07 56.2 28.0 204 299-519 62-287 (410)
364 COG3386 Gluconolactonase [Carb 97.9 0.01 2.2E-07 55.3 24.0 220 283-510 31-277 (307)
365 PF04053 Coatomer_WDAD: Coatom 97.9 0.0067 1.5E-07 59.6 23.3 144 273-430 29-173 (443)
366 KOG2444 WD40 repeat protein [G 97.9 1.9E-05 4E-10 67.1 4.7 142 375-520 33-178 (238)
367 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0019 4.1E-08 48.9 14.3 100 279-385 2-109 (111)
368 KOG1897 Damage-specific DNA bi 97.8 0.057 1.2E-06 56.2 29.5 289 231-526 530-863 (1096)
369 PF03178 CPSF_A: CPSF A subuni 97.8 0.011 2.4E-07 56.3 23.4 179 243-427 42-262 (321)
370 KOG4441 Proteins containing BT 97.8 0.038 8.3E-07 56.7 28.0 228 242-478 284-548 (571)
371 PF08596 Lgl_C: Lethal giant l 97.8 0.0058 1.3E-07 59.2 20.6 239 278-526 3-297 (395)
372 PF02897 Peptidase_S9_N: Proly 97.8 0.053 1.1E-06 53.9 30.7 240 233-481 125-409 (414)
373 KOG4640 Anaphase-promoting com 97.7 0.00019 4.1E-09 69.9 9.8 94 230-327 19-114 (665)
374 PHA02713 hypothetical protein; 97.7 0.0044 9.6E-08 63.5 20.3 198 329-533 303-548 (557)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.03 6.5E-07 54.2 24.5 84 401-485 308-407 (415)
376 COG3386 Gluconolactonase [Carb 97.7 0.026 5.7E-07 52.6 23.5 218 237-466 30-275 (307)
377 KOG4441 Proteins containing BT 97.7 0.005 1.1E-07 63.0 20.1 218 299-525 302-552 (571)
378 PF08553 VID27: VID27 cytoplas 97.7 0.0066 1.4E-07 63.1 20.7 194 230-429 429-646 (794)
379 smart00320 WD40 WD40 repeats. 97.7 9E-05 2E-09 44.7 4.8 38 222-259 3-40 (40)
380 PRK13616 lipoprotein LpqB; Pro 97.7 0.0066 1.4E-07 62.1 20.5 182 232-424 350-562 (591)
381 KOG4640 Anaphase-promoting com 97.6 0.00029 6.2E-09 68.7 9.6 92 277-369 21-114 (665)
382 PHA02713 hypothetical protein; 97.6 0.0076 1.6E-07 61.9 20.6 197 287-488 303-545 (557)
383 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.097 2.1E-06 53.3 29.2 147 243-393 120-336 (527)
384 KOG2079 Vacuolar assembly/sort 97.6 0.0017 3.7E-08 67.4 15.1 102 242-347 98-202 (1206)
385 smart00320 WD40 WD40 repeats. 97.6 0.00018 3.9E-09 43.3 5.4 39 478-517 2-40 (40)
386 COG3490 Uncharacterized protei 97.5 0.013 2.8E-07 52.0 16.8 186 238-428 120-346 (366)
387 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.12 2.6E-06 50.3 30.9 273 243-520 37-361 (418)
388 COG3204 Uncharacterized protei 97.5 0.065 1.4E-06 48.1 20.6 161 272-432 81-265 (316)
389 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.022 4.8E-07 43.2 15.2 100 321-425 2-109 (111)
390 KOG4499 Ca2+-binding protein R 97.4 0.077 1.7E-06 45.8 19.2 214 290-509 29-275 (310)
391 PRK13616 lipoprotein LpqB; Pro 97.3 0.027 5.9E-07 57.7 18.8 148 275-430 348-525 (591)
392 KOG2817 Predicted E3 ubiquitin 97.2 0.0015 3.3E-08 60.4 8.5 107 21-127 114-230 (394)
393 PF08553 VID27: VID27 cytoplas 97.2 0.0046 9.9E-08 64.3 12.3 135 380-518 502-646 (794)
394 KOG2395 Protein involved in va 97.0 0.017 3.7E-07 55.6 13.5 141 287-430 344-500 (644)
395 PF14870 PSII_BNR: Photosynthe 97.0 0.28 6E-06 45.6 30.0 273 231-516 16-301 (302)
396 COG3204 Uncharacterized protei 97.0 0.17 3.7E-06 45.5 18.8 165 227-393 81-266 (316)
397 COG3490 Uncharacterized protei 97.0 0.24 5.3E-06 44.2 21.8 222 281-526 72-317 (366)
398 KOG2395 Protein involved in va 97.0 0.0075 1.6E-07 58.0 10.6 140 377-518 351-499 (644)
399 COG5276 Uncharacterized conser 96.9 0.28 6E-06 44.1 25.5 192 232-432 87-287 (370)
400 KOG1897 Damage-specific DNA bi 96.9 0.78 1.7E-05 48.3 30.7 241 232-480 354-619 (1096)
401 PF05096 Glu_cyclase_2: Glutam 96.9 0.32 7E-06 43.7 24.9 193 310-507 35-249 (264)
402 PF10168 Nup88: Nuclear pore c 96.8 0.53 1.2E-05 49.5 23.2 29 318-347 84-112 (717)
403 TIGR03074 PQQ_membr_DH membran 96.7 0.54 1.2E-05 49.9 22.7 67 288-355 260-351 (764)
404 PRK10115 protease 2; Provision 96.6 1.2 2.7E-05 47.1 30.3 238 278-522 128-397 (686)
405 PF07995 GSDH: Glucose / Sorbo 96.6 0.69 1.5E-05 44.2 27.8 57 457-514 270-330 (331)
406 KOG2079 Vacuolar assembly/sort 96.5 0.0091 2E-07 62.3 8.2 98 371-469 98-198 (1206)
407 PHA03098 kelch-like protein; P 96.5 0.19 4.1E-06 51.9 18.2 189 287-479 294-514 (534)
408 PRK10115 protease 2; Provision 96.5 1.5 3.2E-05 46.5 32.5 239 232-479 127-397 (686)
409 PF12894 Apc4_WD40: Anaphase-p 96.5 0.011 2.4E-07 37.3 5.4 34 276-310 11-44 (47)
410 PHA03098 kelch-like protein; P 96.4 0.15 3.2E-06 52.6 16.7 188 241-432 293-513 (534)
411 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.3E-07 37.4 5.0 31 231-261 11-41 (47)
412 KOG2444 WD40 repeat protein [G 96.4 0.003 6.5E-08 54.1 3.4 93 288-388 70-164 (238)
413 PF05694 SBP56: 56kDa selenium 96.4 0.99 2.2E-05 43.5 23.7 194 242-435 86-347 (461)
414 PF14870 PSII_BNR: Photosynthe 96.3 0.93 2E-05 42.2 29.0 229 233-473 63-301 (302)
415 PF10647 Gmad1: Lipoprotein Lp 96.3 0.86 1.9E-05 41.6 21.7 147 233-383 25-188 (253)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 0.35 7.5E-06 47.0 16.9 106 281-388 6-144 (415)
417 PF15390 DUF4613: Domain of un 96.2 0.4 8.6E-06 47.5 16.9 167 233-411 21-213 (671)
418 PHA02790 Kelch-like protein; P 96.2 0.41 8.9E-06 48.4 18.1 143 287-432 271-425 (480)
419 TIGR02604 Piru_Ver_Nterm putat 96.2 0.2 4.3E-06 48.7 15.3 145 232-379 14-202 (367)
420 TIGR03118 PEPCTERM_chp_1 conse 96.2 0.99 2.1E-05 41.1 25.5 230 279-510 25-324 (336)
421 PRK13684 Ycf48-like protein; P 96.2 1.3 2.8E-05 42.4 28.4 273 231-518 45-330 (334)
422 PF15390 DUF4613: Domain of un 96.0 0.41 8.9E-06 47.4 15.9 146 277-430 20-186 (671)
423 PF05694 SBP56: 56kDa selenium 95.9 1.5 3.2E-05 42.4 18.7 180 237-419 135-392 (461)
424 PHA02790 Kelch-like protein; P 95.9 0.58 1.3E-05 47.3 17.4 173 242-421 271-456 (480)
425 COG4257 Vgb Streptogramin lyas 95.9 1.2 2.7E-05 39.7 21.0 241 278-523 63-309 (353)
426 PF10168 Nup88: Nuclear pore c 95.8 3 6.5E-05 44.1 22.3 72 277-349 85-180 (717)
427 TIGR02604 Piru_Ver_Nterm putat 95.6 0.8 1.7E-05 44.5 16.8 141 277-419 14-202 (367)
428 TIGR03074 PQQ_membr_DH membran 95.6 3.8 8.3E-05 43.7 22.7 229 288-526 194-484 (764)
429 KOG2247 WD40 repeat-containing 95.5 0.0017 3.7E-08 61.7 -2.2 146 363-514 37-183 (615)
430 KOG4499 Ca2+-binding protein R 95.4 1.6 3.5E-05 38.0 17.4 200 332-539 29-263 (310)
431 KOG3630 Nuclear pore complex, 95.4 0.17 3.7E-06 53.7 11.5 140 278-417 102-260 (1405)
432 KOG1916 Nuclear protein, conta 95.2 0.0054 1.2E-07 62.6 0.2 101 225-328 126-234 (1283)
433 COG5276 Uncharacterized conser 95.2 2.3 4.9E-05 38.5 22.9 149 276-432 86-243 (370)
434 KOG2247 WD40 repeat-containing 95.1 0.0047 1E-07 58.8 -0.6 244 278-526 36-287 (615)
435 KOG2280 Vacuolar assembly/sort 95.1 2.7 5.8E-05 43.2 18.0 196 297-500 63-271 (829)
436 KOG2280 Vacuolar assembly/sort 94.9 0.77 1.7E-05 46.9 13.8 192 231-432 43-248 (829)
437 PF10647 Gmad1: Lipoprotein Lp 94.9 3 6.4E-05 38.1 21.1 143 278-423 25-188 (253)
438 PF08606 Prp19: Prp19/Pso4-lik 94.8 0.0093 2E-07 40.3 0.4 46 66-122 13-58 (70)
439 PF12234 Rav1p_C: RAVE protein 94.7 2.2 4.8E-05 43.8 16.8 112 277-390 30-156 (631)
440 KOG2377 Uncharacterized conser 94.5 0.68 1.5E-05 44.3 11.6 121 398-521 64-187 (657)
441 PLN02193 nitrile-specifier pro 94.4 6.5 0.00014 39.7 20.0 189 287-480 175-414 (470)
442 PF12234 Rav1p_C: RAVE protein 94.1 1.8 3.8E-05 44.5 14.6 112 232-347 30-155 (631)
443 COG4257 Vgb Streptogramin lyas 94.1 4.3 9.3E-05 36.5 22.6 238 232-477 62-306 (353)
444 KOG3630 Nuclear pore complex, 94.0 0.41 9E-06 51.0 10.2 146 232-378 101-261 (1405)
445 KOG2377 Uncharacterized conser 93.9 6.6 0.00014 38.0 20.4 127 251-379 41-172 (657)
446 COG5167 VID27 Protein involved 93.5 0.73 1.6E-05 44.8 10.1 137 378-519 486-632 (776)
447 PLN02153 epithiospecifier prot 93.5 7.4 0.00016 37.4 22.5 65 329-393 85-170 (341)
448 TIGR03548 mutarot_permut cycli 93.3 7.6 0.00016 37.0 19.4 104 329-432 72-196 (323)
449 PF10313 DUF2415: Uncharacteri 93.3 0.36 7.7E-06 29.6 5.0 31 277-307 1-34 (43)
450 PF14727 PHTB1_N: PTHB1 N-term 93.3 9 0.0002 37.6 27.6 143 287-430 36-204 (418)
451 PF05096 Glu_cyclase_2: Glutam 93.0 6.7 0.00015 35.5 24.6 180 233-419 46-249 (264)
452 KOG1916 Nuclear protein, conta 93.0 0.13 2.9E-06 53.0 4.6 111 237-351 189-326 (1283)
453 KOG4460 Nuclear pore complex, 92.8 4.2 9.2E-05 39.9 13.9 26 320-345 105-130 (741)
454 COG5290 IkappaB kinase complex 92.6 5.9 0.00013 41.1 15.2 69 362-431 248-325 (1243)
455 COG3823 Glutamine cyclotransfe 92.5 6.4 0.00014 33.8 14.9 173 329-507 55-247 (262)
456 TIGR03548 mutarot_permut cycli 92.4 10 0.00022 36.1 21.3 134 287-421 72-233 (323)
457 PF10313 DUF2415: Uncharacteri 92.2 0.56 1.2E-05 28.7 4.8 32 489-520 1-34 (43)
458 PF08728 CRT10: CRT10; InterP 92.1 8.2 0.00018 40.3 15.9 145 243-389 49-245 (717)
459 COG5167 VID27 Protein involved 92.0 3.2 6.9E-05 40.6 12.1 135 249-391 486-633 (776)
460 KOG1898 Splicing factor 3b, su 91.9 21 0.00046 38.6 27.9 103 243-345 549-668 (1205)
461 COG5290 IkappaB kinase complex 91.9 12 0.00026 38.9 16.3 32 316-347 110-141 (1243)
462 PF07569 Hira: TUP1-like enhan 91.6 1.1 2.4E-05 39.7 8.3 68 455-524 19-100 (219)
463 TIGR03547 muta_rot_YjhT mutatr 91.6 13 0.00029 35.7 20.7 53 329-381 63-128 (346)
464 PRK14131 N-acetylneuraminic ac 91.6 14 0.00031 36.0 20.7 53 329-381 84-149 (376)
465 PF09398 FOP_dimer: FOP N term 91.5 0.4 8.7E-06 34.2 4.3 31 24-54 20-50 (81)
466 PLN02153 epithiospecifier prot 91.5 14 0.00029 35.6 24.3 145 287-432 85-286 (341)
467 PF07250 Glyoxal_oxid_N: Glyox 91.3 3.4 7.4E-05 37.0 11.0 146 342-489 48-210 (243)
468 KOG1983 Tomosyn and related SN 91.1 18 0.00039 40.1 18.4 30 232-261 36-65 (993)
469 KOG2063 Vacuolar assembly/sort 90.9 26 0.00057 37.8 18.5 72 238-310 21-100 (877)
470 KOG4460 Nuclear pore complex, 90.8 6.5 0.00014 38.7 12.8 26 278-303 105-130 (741)
471 PF11715 Nup160: Nucleoporin N 90.7 1.6 3.5E-05 45.1 9.9 75 241-315 156-257 (547)
472 PF07569 Hira: TUP1-like enhan 90.6 2.9 6.4E-05 37.0 10.0 69 284-353 18-100 (219)
473 PF13449 Phytase-like: Esteras 90.4 17 0.00036 34.7 18.2 108 230-338 18-166 (326)
474 TIGR03118 PEPCTERM_chp_1 conse 90.3 15 0.00032 33.9 22.1 209 233-442 24-290 (336)
475 PF09862 DUF2089: Protein of u 89.9 0.48 1E-05 36.2 3.8 75 23-116 36-112 (113)
476 KOG1900 Nuclear pore complex, 89.8 10 0.00022 41.8 14.6 137 295-432 96-274 (1311)
477 COG1520 FOG: WD40-like repeat 89.7 21 0.00045 34.8 23.2 192 290-486 70-278 (370)
478 PLN00033 photosystem II stabil 89.7 22 0.00047 34.9 32.9 147 364-516 242-396 (398)
479 PF07995 GSDH: Glucose / Sorbo 89.6 20 0.00043 34.3 15.4 49 362-411 3-59 (331)
480 PRK13684 Ycf48-like protein; P 89.2 21 0.00046 34.1 23.6 105 318-425 172-283 (334)
481 COG4590 ABC-type uncharacteriz 89.1 2.2 4.8E-05 41.0 8.2 165 224-392 213-388 (733)
482 KOG1898 Splicing factor 3b, su 89.1 37 0.00081 36.9 19.3 172 299-475 854-1047(1205)
483 PF14781 BBS2_N: Ciliary BBSom 89.1 10 0.00022 30.2 13.0 111 367-481 5-130 (136)
484 PF10395 Utp8: Utp8 family; I 88.9 32 0.00069 35.8 23.7 235 283-525 34-311 (670)
485 PRK14131 N-acetylneuraminic ac 88.8 25 0.00053 34.4 21.9 53 287-339 84-149 (376)
486 COG3877 Uncharacterized protei 88.7 1.2 2.7E-05 32.8 4.9 80 18-117 40-121 (122)
487 KOG1983 Tomosyn and related SN 88.5 23 0.0005 39.3 16.7 109 277-391 36-145 (993)
488 PF08728 CRT10: CRT10; InterP 88.4 6.3 0.00014 41.1 11.6 105 242-347 113-245 (717)
489 PLN02193 nitrile-specifier pro 88.1 32 0.0007 34.8 22.4 146 287-432 228-412 (470)
490 PF07676 PD40: WD40-like Beta 87.7 2.6 5.6E-05 25.2 5.4 32 485-516 5-38 (39)
491 PF07676 PD40: WD40-like Beta 87.4 2.3 5E-05 25.4 5.0 32 227-258 4-38 (39)
492 PF10433 MMS1_N: Mono-function 87.3 37 0.0008 34.7 30.2 236 278-517 45-340 (504)
493 TIGR03606 non_repeat_PQQ dehyd 87.2 34 0.00073 34.1 19.9 107 275-381 28-166 (454)
494 PF05935 Arylsulfotrans: Aryls 86.6 39 0.00085 34.2 16.4 173 296-488 126-313 (477)
495 PF08801 Nucleoporin_N: Nup133 86.6 24 0.00051 35.1 14.6 32 401-432 190-221 (422)
496 PF03022 MRJP: Major royal jel 86.5 28 0.0006 32.5 16.3 163 254-418 35-253 (287)
497 smart00036 CNH Domain found in 86.3 30 0.00065 32.6 24.5 249 280-535 5-288 (302)
498 PF14781 BBS2_N: Ciliary BBSom 86.1 16 0.00034 29.2 12.6 108 324-432 4-127 (136)
499 PF12768 Rax2: Cortical protei 86.0 29 0.00062 32.1 14.6 90 340-429 16-122 (281)
500 KOG3616 Selective LIM binding 86.0 9.2 0.0002 39.4 10.8 295 234-538 17-386 (1636)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-87 Score=587.51 Aligned_cols=513 Identities=49% Similarity=0.857 Sum_probs=480.0
Q ss_pred CCCCCCcccCCCCCCchHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHHHHHHHHHhcCChHHHHHHhcccCCCCh
Q 009188 6 PSEGDEDVIGPAGVIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDE 85 (540)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~ 85 (540)
+..|.|-.++.++.|...|++|+++|+|...||.+|+.+||.|+|+.+.+...+.|.+.+++|+|+.++..+..+..+++
T Consensus 1 ~~ng~~~~l~~k~likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de 80 (519)
T KOG0293|consen 1 YQNGSNEILGSKGLIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDE 80 (519)
T ss_pred CCCcchhhhhhhceeccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcch
Confidence 35688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhHHHHHhhhhhhhcccccchhHHHHHHHhhccCCCCCchhHHHhhcccccCCccccccCCCCcccccccHHHHHHH
Q 009188 86 SVVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELSSCIVSPPKCVVVCSPKQDIVRAKSRPKLLEE 165 (540)
Q Consensus 86 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 165 (540)
...++++|++.+|+|||++..+....|+.+||+.+.++....+++++|+..+..++.....+. .........|..|+++
T Consensus 81 ~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~-~~~~~~~n~R~~ll~e 159 (519)
T KOG0293|consen 81 RNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEE-NTTAQLNNERDKLLDE 159 (519)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhcccccccccc-chhhhhchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987776544322111 1122235689999999
Q ss_pred HhhcCCCCCCcChhHHHHHHHHHHHHHHhhcccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCe
Q 009188 166 LQKLLPPMIMIPERRLEHLVEQALVLQREACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKY 245 (540)
Q Consensus 166 ~~~~~~~~~~~p~~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~ 245 (540)
+++++||.+++|++||+.|++||+.+|+..|+||++.+. ++++.||.|++.++|.+..+++..|+++|+.+.||++|+|
T Consensus 160 lskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnslds-vsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGky 238 (519)
T KOG0293|consen 160 LSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-VSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKY 238 (519)
T ss_pred HHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccch-hhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCee
Confidence 999999999999999999999999999999999998885 9999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecC-CCcEEEE
Q 009188 246 LASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA-GLGLVSC 324 (540)
Q Consensus 246 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~ 324 (540)
||+++.|.+..||.+......+..+++.+|..+|..+.||||.++|++|+.+..+++||+.+|.+...+... ...+.++
T Consensus 239 LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc 318 (519)
T KOG0293|consen 239 LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSC 318 (519)
T ss_pred EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCccee
Confidence 999999999999999888888899999999999999999999999999999999999999999998887644 6789999
Q ss_pred EEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCce
Q 009188 325 GWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTI 403 (540)
Q Consensus 325 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i 403 (540)
+|.|||..+++|+.|+++..||+++.....+.......|.++++++||+++++.+.|..+++++..+.. ........+|
T Consensus 319 ~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 319 AWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred EEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce
Confidence 999999999999999999999999999988888888899999999999999999999999999999887 4477889999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEe
Q 009188 404 TSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGA 483 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 483 (540)
+++++|.+++++++.-.+..+++||++.. ..+.++.||....+.|+.||...+..++++||+|+.|+||+..+|+++..
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 99999999999999999999999999955 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 484 LPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 484 ~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
+.||...|++|+|+|.++.++||+|+||+||||.....
T Consensus 478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999999999999999998753
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.5e-67 Score=446.44 Aligned_cols=482 Identities=21% Similarity=0.342 Sum_probs=407.5
Q ss_pred CchHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccCh-HHHHHHHHHhcCChHHHHHHhcccCCCChhhHhhHHHHHhhh
Q 009188 20 IKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSS-MVNLFTQQILDGHWDESLATLSKIGLVDESVVKSASFLILEQ 98 (540)
Q Consensus 20 ~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~-~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 98 (540)
+.+.+|+|||.|||+|+.++.++++||+|+++++|+. .++.|.+.|.+|+||.++..+.+|++|+..+.. ||+|
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~d-----LYEq 79 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKLID-----LYEQ 79 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHHHH-----HHHH
Confidence 4577999999999999999999999999999999986 499999999999999999999999999977766 9999
Q ss_pred hhhhcccccchhHHHHHHHhhccCCC----CCchhHHHhhcccccCCccccccCCCCcccccccHHHHHHHHhhcCCCCC
Q 009188 99 KFFELLDAEKVMDALKTLRAEIAPLC----IKNSRVRELSSCIVSPPKCVVVCSPKQDIVRAKSRPKLLEELQKLLPPMI 174 (540)
Q Consensus 99 ~~lell~~~~~~~a~~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~ 174 (540)
..+||+|.++...|..+||+. .|.. .+++++..|.+++..+..+- ..+..+.+++++|..+.+.+..++ -
T Consensus 80 ivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE~ll~R~YFDp--~EaY~dssKEkrRa~IAQ~ls~EV---~ 153 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLENLLNRSYFDP--REAYGDSSKEKRRAVIAQALSGEV---H 153 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHHHHhcccccCh--hhhcCcchHHHHHHHHHHHhcCce---E
Confidence 999999999999999999984 4433 36788888888886643221 112233457788888998888765 5
Q ss_pred CcChhHHHHHHHHHHHHHHhhcccccCCCCCCccccCCCcC----cCCCCcceEEec-ccCcCcEEEEEEecCCCeEEEE
Q 009188 175 MIPERRLEHLVEQALVLQREACMFHNSSDRDMSLYTDHQCG----RDQIPSRTLQIL-QGHTDEVWFLQFSHNGKYLASS 249 (540)
Q Consensus 175 ~~p~~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l-~~h~~~V~~~~~sp~g~~l~tg 249 (540)
.+||.||..++.|+++||..+.+++++. .+.+|...... .+..|....+.+ .|.++.+-|..|||||+||++|
T Consensus 154 VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsg 231 (508)
T KOG0275|consen 154 VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSG 231 (508)
T ss_pred EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeec
Confidence 7899999999999999999999887654 45566543322 234455544433 3667889999999999999999
Q ss_pred eCCCcEEEEEeecCCc-----eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee-cCCCcEEE
Q 009188 250 SNDRSAIIWEVDLNGG-----VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGLVS 323 (540)
Q Consensus 250 ~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~ 323 (540)
+.||.|.+|+..++.- +.....+..+..+|.|++|+.|...+++|+.||.|++|.+.+|.|++.|. .|...|+|
T Consensus 232 SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~ 311 (508)
T KOG0275|consen 232 SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTC 311 (508)
T ss_pred cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeE
Confidence 9999999999876521 12223455688999999999999999999999999999999999999998 88999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce----EEEeec
Q 009188 324 CGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV----ERYIEE 399 (540)
Q Consensus 324 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~ 399 (540)
+.|+.|+..+++++.|.++++.-+.++++.....+|.+.|+...|++||..+++++.||+|++|+..+.. ......
T Consensus 312 l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~ 391 (508)
T KOG0275|consen 312 LSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT 391 (508)
T ss_pred EEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC
Confidence 9999999999999999999999999988888888898999999999999999999999999999998865 233345
Q ss_pred CCceeEEEEcCC-CCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC
Q 009188 400 DQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 400 ~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 478 (540)
+.+|+++-.-|. ...++++...+++++.++.+ +.++.+..........-.+..+|.|.++++.++|+.++.|.+.+|
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 678888888774 47899999999999999986 577777654433333334455999999999999999999999999
Q ss_pred ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 479 DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 479 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
++..++.-|...|..++-+|..+ ++++.+.||.+++|.
T Consensus 470 ~LE~tl~VhEkdvIGl~HHPHqN-llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTHHPHQN-LLASYSEDGLLKLWK 507 (508)
T ss_pred ceeeeeecccccccccccCcccc-hhhhhcccchhhhcC
Confidence 99999999999999999999885 999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-51 Score=359.35 Aligned_cols=318 Identities=21% Similarity=0.357 Sum_probs=281.5
Q ss_pred ccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc
Q 009188 207 SLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286 (540)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 286 (540)
.+|.+....+.+.-.++...+.||.++|.|++|+|+|..|++|+.|.++++||+.+. .+..+.++|...|.|++|+|
T Consensus 91 lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsP 167 (480)
T KOG0271|consen 91 LVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSP 167 (480)
T ss_pred EEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECC
Confidence 345555555556667888899999999999999999999999999999999999877 56788999999999999999
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeE-EEEeecCCCcEEEEEEec-----CCCEEEEEeCCCcEEEEecCCceEEEeecccc
Q 009188 287 DDQQLLTCGVEEAVRRWDVSSGNC-LHVYEKAGLGLVSCGWHP-----DRKWIFSGANDKSICMWELGGKELECWKGQRT 360 (540)
Q Consensus 287 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (540)
||+.||+|+.||+|++||..+|++ ...+.+|...|++++|.| ..++|++++.||.|+|||+..+........|.
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence 999999999999999999999876 467899999999999987 56799999999999999999999999999999
Q ss_pred ceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEc-----------CCCC--------------
Q 009188 361 LKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLS-----------RDNK-------------- 413 (540)
Q Consensus 361 ~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s-----------~~~~-------------- 413 (540)
.+|+|+.|--+ .++++++.|++|++|+...+. ..+.+|...|+.++.+ |.++
T Consensus 248 ~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 248 ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 99999999755 478999999999999998865 6677888888888776 3333
Q ss_pred -----------EEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeE
Q 009188 414 -----------FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIG 482 (540)
Q Consensus 414 -----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 482 (540)
.+++|+.|.++.+|+-....+++.+..+|...+.. ..++||++++|++|.|..|++||..+|+.+.
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~---V~fSPd~r~IASaSFDkSVkLW~g~tGk~la 403 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH---VSFSPDGRYIASASFDKSVKLWDGRTGKFLA 403 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee---EEECCCccEEEEeecccceeeeeCCCcchhh
Confidence 49999999999999988777888999999886444 3449999999999999999999999999999
Q ss_pred eecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc-CCCc
Q 009188 483 ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC-HSNG 532 (540)
Q Consensus 483 ~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~-~~~~ 532 (540)
+|+||-++|+.++|+.|. ++|+|||.|.++++|++++.++..... |...
T Consensus 404 sfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 404 SFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred hhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeeeecccCCCCCce
Confidence 999999999999999988 499999999999999999999887654 4443
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-49 Score=347.68 Aligned_cols=307 Identities=23% Similarity=0.476 Sum_probs=278.6
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH 275 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h 275 (540)
.+.+++.|.++++|+.. ...+..+.++|...|.|++|+|||+.||+|+.||+|++||..+++ .....+.+|
T Consensus 129 ~l~tGsGD~TvR~WD~~-------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~--~~g~~l~gH 199 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLD-------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ--QIGRALRGH 199 (480)
T ss_pred eEEecCCCceEEeeccC-------CCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC--cccccccCc
Confidence 45677888888888644 356788999999999999999999999999999999999987664 456789999
Q ss_pred CCCeEEEEECc-----CCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc
Q 009188 276 QKPVSCVSWSS-----DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK 350 (540)
Q Consensus 276 ~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 350 (540)
...|++++|.| ..++|++++.||+|+|||+..+.++..+.+|..+|+|+.|--+| ++++|+.|++|++|+...+
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccch
Confidence 99999999976 66899999999999999999999999999999999999998665 8999999999999999888
Q ss_pred eEEEeeccccceEEEEEEcc-----------C-------------------------CCEEEEEecCCeEEEEECCCce-
Q 009188 351 ELECWKGQRTLKISDLEVTS-----------D-------------------------GKQIITMCKESALLLLDREAKV- 393 (540)
Q Consensus 351 ~~~~~~~~~~~~v~~i~~~~-----------~-------------------------~~~l~~~~~d~~i~~~d~~~~~- 393 (540)
.+......|...|+.++++. . +..+++|+.|.++.+|+.....
T Consensus 279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 88888888888999988872 2 3459999999999999976543
Q ss_pred --EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEE
Q 009188 394 --ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVY 471 (540)
Q Consensus 394 --~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~ 471 (540)
.+..+|..-|+.+.||||++++++++-|..|++||.+++ +.+..|.+|-..++.+.+ +.|.++|++||.|.+++
T Consensus 359 pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvaw---saDsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAW---SADSRLLVSGSKDSTLK 434 (480)
T ss_pred chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEe---ccCccEEEEcCCCceEE
Confidence 677789999999999999999999999999999999998 899999999999888766 77899999999999999
Q ss_pred EEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 472 IWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 472 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
+||+++.++...++||.+.|.++.|+|||. .+++|+.|..+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 999999999999999999999999999996 999999999999995
No 5
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-48 Score=349.74 Aligned_cols=312 Identities=22% Similarity=0.367 Sum_probs=268.5
Q ss_pred CCCCcceEEecccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCce-----EEEEEe------cCCCCCeEEEEE
Q 009188 217 DQIPSRTLQILQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGV-----TLKHKL------SGHQKPVSCVSW 284 (540)
Q Consensus 217 ~~~~~~~~~~l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~-----~~~~~~------~~h~~~v~~l~~ 284 (540)
..+|....+.+. |..+|.+++|+|-.. .+++|+.|-+.++|++...... .+.+.+ ...+..|++++|
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 346777777887 999999999999666 8999999999999998741110 011111 123467999999
Q ss_pred CcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEE
Q 009188 285 SSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKIS 364 (540)
Q Consensus 285 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 364 (540)
+.+|..||+|+.||.+++|+. +|..+.++..|.++|.++.|+.+|++|++++.||++.+||..+++..+....+..+-.
T Consensus 244 n~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred cCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence 999999999999999999995 7888999999999999999999999999999999999999999888888877776657
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCC
Q 009188 365 DLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 365 ~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
++.|-.+ ..+++.+.|+.|+++.+.... ..+.+|.++|.++.|+|.+.+|++++.|++++||..... .....+..|
T Consensus 323 DVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~H 400 (524)
T KOG0273|consen 323 DVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAH 400 (524)
T ss_pred ceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhh
Confidence 7777654 568888999999999876644 788889999999999999999999999999999998766 677888889
Q ss_pred cCCeeEEEeeeccC------CCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 443 KRSRFVIRSCFGGL------EQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 443 ~~~~~~i~~~~~~~------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
...++.+.+....| .+..+++++.|++|++||+..+.+++.|..|..+|++++|+|++. ++++|+.||.|.+|
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIW 479 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEec
Confidence 88877776643322 456799999999999999999999999999999999999999996 99999999999999
Q ss_pred cCCCCCccccccCCCce
Q 009188 517 GLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 517 ~~~~~~~~~~~~~~~~v 533 (540)
+.+++++.+.....++|
T Consensus 480 s~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 480 STKTGKLVKSYQGTGGI 496 (524)
T ss_pred cccchheeEeecCCCeE
Confidence 99999999998888886
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-46 Score=334.09 Aligned_cols=284 Identities=21% Similarity=0.303 Sum_probs=264.1
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC--CCeEEEeeCCCcEEEEE
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD--DQQLLTCGVEEAVRRWD 304 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd 304 (540)
-.|-+.+|..+.||+|++.|||||-+|.+++|+.... ....++.+|...|.++.|+|. +..++||+.||++++|+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 3456789999999999999999999999999998754 677889999999999999997 67999999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeE
Q 009188 305 VSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
+.+...+..+.+|...|..++|+|+|++|++++.|.+-++||++++.......+|...|.+++|.+||..+++|+-|..-
T Consensus 248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred cCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 99999999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred EEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEE
Q 009188 385 LLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462 (540)
Q Consensus 385 ~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 462 (540)
++||++++. ..+.+|..+|.+++|+|+|..+++|+.|++++|||++.. ..+.++..|.+-+..+++. ...|.+|+
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~--p~~g~fL~ 404 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYS--PQEGYFLV 404 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEec--ccCCeEEE
Confidence 999999977 555679999999999999999999999999999999988 6688899999887666542 24899999
Q ss_pred EeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 463 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
|++.|++++||...++.+++++.||.+.|.+++++|++. .++|++.|.++++|.
T Consensus 405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred EcccCcceeeecCCCcccchhhcCCccceEEEEeccCCc-eEEEeccCceeeecc
Confidence 999999999999999999999999999999999999995 999999999999996
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=297.61 Aligned_cols=290 Identities=19% Similarity=0.328 Sum_probs=262.7
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
-+..++|+||.+.|.++.|++|+++++++|.||.+.|||.-+.. ..+.++-....|..++|+|.|+++|+|+-|+..
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc---ceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 44558999999999999999999999999999999999987663 345566677889999999999999999999999
Q ss_pred EEEECCCC------eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc-CCC
Q 009188 301 RRWDVSSG------NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS-DGK 373 (540)
Q Consensus 301 ~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~ 373 (540)
.||++.+. +..+.+.+|.+.+.|+.|.+| .+|++++.|.+..+||+++++....+..|...|.+++++| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99999865 456678899999999999875 5899999999999999999999999999999999999999 999
Q ss_pred EEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEe
Q 009188 374 QIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRS 451 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 451 (540)
.+++|+-|+..++||++... ..+..|+..|++++|.|+|.-+++|+.|++.++||++.. +.+..|. +......+..
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys-~~~~~~gitS 278 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYS-HDSIICGITS 278 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeec-cCcccCCcee
Confidence 99999999999999999876 778899999999999999999999999999999999987 5566665 4444555666
Q ss_pred eeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 452 CFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
+.++..|++|++|..|.++.+||.-.++.+..+.+|.+.|.++..+|||. .++|||.|.++|||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCc-EEEecchhHheeecC
Confidence 66799999999999999999999999999999999999999999999996 999999999999995
No 8
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3e-43 Score=317.73 Aligned_cols=297 Identities=21% Similarity=0.399 Sum_probs=270.9
Q ss_pred CCCCcceEEecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee
Q 009188 217 DQIPSRTLQILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG 295 (540)
Q Consensus 217 ~~~~~~~~~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 295 (540)
-.+|.+.+..+.||+..|+++.|.| .+.+|++|+.|+.|+||++-.. ..+++++.+|..+|.+++|+++|..++++|
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCCeeeeee
Confidence 3568889999999999999999999 8999999999999999999753 378899999999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 296 VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
.|+.+++||+++|+++..+.. +..++|+.|+|++ +.|++|+.|+.|+.||++++++......|...|..+.|-++|++
T Consensus 278 fD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred cceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence 999999999999999999854 4578999999988 89999999999999999999998888889999999999999999
Q ss_pred EEEEecCCeEEEEECCCce-E--EEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc--eeeeEeeCCcCCeeEE
Q 009188 375 IITMCKESALLLLDREAKV-E--RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV--KLVAKYKGHKRSRFVI 449 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~-~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~i 449 (540)
+++.+.|+++++|+.+... . ..........++..+|+++++++-+.|+.|.+|.+.... ...+.|.+|....+.+
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 9999999999999999877 2 222345567889999999999999999999999976442 3345788999998988
Q ss_pred EeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 450 RSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.+-| +|||.+|++|+.||.+++||.++.+++..+++|.+++..+.|+|..+..+||||.||.|++|+
T Consensus 437 ~v~f-SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDF-SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEE-cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 8877 999999999999999999999999999999999999999999999888999999999999997
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=283.43 Aligned_cols=290 Identities=26% Similarity=0.459 Sum_probs=253.5
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
.++-.+.||++.|+.+.|+|+|.+||||+.|..|.+|++.. ..+-...+++|.++|..+.|.+|++.++++|.|.+++
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g--dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG--DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc--cccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 34556789999999999999999999999999999999763 2345567889999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEecCCC-EEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec
Q 009188 302 RWDVSSGNCLHVYEKAGLGLVSCGWHPDRK-WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
.||.++|++++.++.|..-|..+.-..-|. .+.+|+.||++++||++.+......... .+++++.|..++..+++|+-
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-yqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-YQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc-eeEEEEEecccccceeeccc
Confidence 999999999999999999999888544444 5668899999999999987766555433 38999999999999999999
Q ss_pred CCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC---ceeeeEeeCCcC--CeeEEEeee
Q 009188 381 ESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE---VKLVAKYKGHKR--SRFVIRSCF 453 (540)
Q Consensus 381 d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~--~~~~i~~~~ 453 (540)
|+.|++||++... ....+|..+|+.+..+|+|.++++.+.|.++++||++.. .+.+..+.++.. ....+ .|.
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL-~cs 273 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL-KCS 273 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc-eee
Confidence 9999999998766 666789999999999999999999999999999999743 355777777654 33334 445
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
|+|++.++.+|+.|..+++||..+...+..++||.+.|++++|+|..+ +|.+++.|.+|++=
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~lg 335 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYLG 335 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEee
Confidence 599999999999999999999999999999999999999999999997 99999999999863
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-39 Score=274.97 Aligned_cols=291 Identities=20% Similarity=0.323 Sum_probs=249.0
Q ss_pred eEEecccCcCcEEEEEEecC-CCeEEEEeCCCcEEEEEeecCCc--eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 223 TLQILQGHTDEVWFLQFSHN-GKYLASSSNDRSAIIWEVDLNGG--VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~-g~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
...++++|++.|+.++..+. ...+++++.|.++.+|++..... -...+.+.+|...|..+..++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 45689999999999999997 45888999999999999875422 1357789999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc-cceEEEEEEccC--CCEEE
Q 009188 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR-TLKISDLEVTSD--GKQII 376 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~--~~~l~ 376 (540)
+++||+.+|+..+.|.+|...|.+++|++|++++++|+.|.+|++|++-+.......... ...|.++.|+|+ ...++
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 999999999999999999999999999999999999999999999999887776666554 778999999998 78999
Q ss_pred EEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeec
Q 009188 377 TMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG 454 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 454 (540)
+++.|+++++||+++.+ ..+.+|.+.++.+++||||...++|+.||.+.+||++.. +....+... . .+..+.+
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a~-~---~v~sl~f 241 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEAF-D---IVNSLCF 241 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEeccCC-C---eEeeEEe
Confidence 99999999999999977 677889999999999999999999999999999999987 444444332 2 3555555
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCceeEeecC----C-----CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 455 GLEQAFIASGSEDSQVYIWHRASCDLIGALPG----H-----SGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 455 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
+|+...|+.+. +..|+|||+.++..+..++. . .....+++|+++|. .|++|-.|+.|++|.+..
T Consensus 242 spnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 242 SPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence 88876665554 45599999999988876652 1 22356789999995 999999999999998753
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=269.42 Aligned_cols=278 Identities=20% Similarity=0.363 Sum_probs=243.0
Q ss_pred CeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe--EEEEeecCCCcE
Q 009188 244 KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN--CLHVYEKAGLGL 321 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v 321 (540)
-+|+++|.|.+|++|...++ .+..+++...+.|+.+...|+++.||+++. ..|++||+++++ ++.++.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 37999999999999999877 788888888889999999999999998875 469999999875 589999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEee
Q 009188 322 VSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYIE 398 (540)
Q Consensus 322 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~ 398 (540)
+.+.|..+|+.+++|+.||+++|||++...+.+..... .+|+++..+|+...|+++..+|.|++||+.... .....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 99999999999999999999999999986666655555 699999999999999999999999999999875 33345
Q ss_pred cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC-----ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEE
Q 009188 399 EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE-----VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW 473 (540)
Q Consensus 399 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iw 473 (540)
....|.++.+.|||++++.+...|..++|++-+. ..++.+++.|...+ ++ |.++|++++||++|.|.+++||
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i--l~-C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI--LR-CLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE--EE-EEECCCCcEEEeecCCceEEEE
Confidence 5678999999999999999999999999998643 35666777777653 33 3449999999999999999999
Q ss_pred ECCCC-ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCC
Q 009188 474 HRASC-DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHS 530 (540)
Q Consensus 474 d~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~ 530 (540)
+..+. +....+.+|...+++.+||.++. +|+|++.|+.+++|++..++..+....+
T Consensus 243 n~~~~~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred ecCCceeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccCceeeecCCc
Confidence 99987 66678899999999999999996 9999999999999999999877664433
No 12
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-39 Score=265.59 Aligned_cols=291 Identities=24% Similarity=0.393 Sum_probs=260.5
Q ss_pred CCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC
Q 009188 218 QIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE 297 (540)
Q Consensus 218 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 297 (540)
..|.+....+.+|.++|..+.|+-+|+|.++++.|.+|++|+...+ .+++++.+|...|..++.+.|+..+++|+.|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCC
Confidence 4567788899999999999999999999999999999999998766 7889999999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC--ceEEEeeccccceEEEEEEccCCCEE
Q 009188 298 EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG--KELECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
..+.+||+.+|+..+.+.+|...|..+.|+.+...+++|+.|.++++||.++ .++.+........|.++.+. +..+
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heI 158 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEI 158 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEE
Confidence 9999999999999999999999999999999999999999999999999975 44455555555677777765 6689
Q ss_pred EEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeecc
Q 009188 376 ITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 455 (540)
++|+.||+++.||++.+....-....+|++++|+++++..++++.|+++++.|-.++ +++..+++|....+.+.+++ .
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l-~ 236 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCL-N 236 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeee-c
Confidence 999999999999999999888788899999999999999999999999999998888 89999999999999999888 6
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCC-eEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 456 LEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGA-VNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 456 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.....+++|++||.|++||+.....+..+..|... |.+++++|.-.. ++++.. +.+.+|-
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~-f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD-FITATG-HGDLFWY 297 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc-eeEecC-Cceecee
Confidence 66789999999999999999999999999988877 899999998864 444433 3455554
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.5e-38 Score=262.39 Aligned_cols=287 Identities=23% Similarity=0.418 Sum_probs=242.5
Q ss_pred eEEecccCcCcEEEEEEecC-CCeEEEEeCCCcEEEEEeecCCceEEEEEe-cCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 223 TLQILQGHTDEVWFLQFSHN-GKYLASSSNDRSAIIWEVDLNGGVTLKHKL-SGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~-g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
.++.+++|++.|+.++|+|- |..||+||.|+.|+||+...+....+...+ .+|+..|++++|+|.|++|++||.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46789999999999999998 889999999999999998754455555444 4799999999999999999999999999
Q ss_pred EEEECCCC--eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC---ceEEEeeccccceEEEEEEccCCCEE
Q 009188 301 RRWDVSSG--NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG---KELECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 301 ~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
.||.-..+ +++..+.+|...|.|++|+++|++||+++.|+.|-||.+.. .++......|...|..+.|+|....|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99986654 78999999999999999999999999999999999999953 45667788888899999999999999
Q ss_pred EEEecCCeEEEEECC-Cc----eEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEE
Q 009188 376 ITMCKESALLLLDRE-AK----VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~-~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 450 (540)
++++.|++|++|+.. .. ...+.++...+-+++|+|.|..+++++.|++++||-.... .-..|....+.+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVP 240 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeee
Confidence 999999999999877 33 2566678889999999999999999999999999986532 1123445555555
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECCCC------cee-EeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRASC------DLI-GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
++ ...|++++.|+.|++|..... +++ ..-..|...|+++.|+|..+.+|++||+||.|++|.+.
T Consensus 241 W~-----~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 241 WD-----NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ec-----ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 43 457999999999999975542 122 23346899999999999756799999999999999875
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.8e-40 Score=291.58 Aligned_cols=259 Identities=20% Similarity=0.291 Sum_probs=238.2
Q ss_pred CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC--CCEEEEEeCCCcEEEEecCCce
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD--RKWIFSGANDKSICMWELGGKE 351 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 351 (540)
+.+.+|..+.|+++++.|+|||.+|.++||+..+...+.++.+|...+.++.|+|. +..+++|+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56778999999999999999999999999999999999999999999999999995 6699999999999999999877
Q ss_pred EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 352 LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 352 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
......+|...|..++|+|+|++|.+++.|.+-++||+.++. ....+|...|.+++|.|||..+++|+.|..-++||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 777777788899999999999999999999999999999987 556689999999999999999999999999999999
Q ss_pred cCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 430 EGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
+++ ..+..+.+|...++.+.+ +|+|..+||||.|++++|||++..+.+.++++|.+-|+.|.|+|...++|+|+|.
T Consensus 333 Rtg-r~im~L~gH~k~I~~V~f---sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 333 RTG-RCIMFLAGHIKEILSVAF---SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ccC-cEEEEecccccceeeEeE---CCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 999 888899999998776654 9999999999999999999999999999999999999999999966679999999
Q ss_pred CCcEEEecCCCCCccccccC-CCceEec
Q 009188 510 DRTIRIWGLKDLNVKRKDCH-SNGVHYC 536 (540)
Q Consensus 510 Dg~i~iw~~~~~~~~~~~~~-~~~v~~c 536 (540)
|++++||...+.++.+.... .+.|.-|
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISL 436 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEE
Confidence 99999999999999987544 4445433
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-38 Score=278.09 Aligned_cols=290 Identities=19% Similarity=0.313 Sum_probs=267.2
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
+...+.+.||..+|+.+-|+|+-..+++++.|++|++||..++ ++...+++|.+.|.+++|+..|+++++++.|-.+
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 3566788899999999999999999999999999999999876 5578899999999999999999999999999999
Q ss_pred EEEECCC-CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 301 RRWDVSS-GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 301 ~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
++||..+ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++........|...|..+..+.||..+++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999987 678888889999999999999999999999999999999999998888888888999999999999999999
Q ss_pred cCCeEEEEECCCce--EEEeecCCceeEEEEcCC---------------CCEEEEEecCCeEEEEEecCCceeeeEeeCC
Q 009188 380 KESALLLLDREAKV--ERYIEEDQTITSFSLSRD---------------NKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 380 ~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
.|.++++|-..++. .....|+.++.+++|-|. +.++.+++.|++|++||+.++ .++.++.+|
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~gh 333 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGH 333 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecc
Confidence 99999999999984 667788899999998663 258999999999999999998 899999999
Q ss_pred cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 443 KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 443 ~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
...+..+ .++|.|+||+++.+|+++++||++++++.+.+..|..-|++++|+.+.+ +++||+-|.++++|..
T Consensus 334 dnwVr~~---af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNWVRGV---AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeee---EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 9875444 3489999999999999999999999999999999999999999999887 9999999999999974
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=276.18 Aligned_cols=295 Identities=18% Similarity=0.341 Sum_probs=263.7
Q ss_pred cCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee
Q 009188 216 RDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG 295 (540)
Q Consensus 216 ~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 295 (540)
.+-.|-+..+++.||.+.|.|+++.|...+|+||+.|++|+|||+.++ .+..++.+|...|..+++|+...|+++++
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEec
Confidence 356678889999999999999999999999999999999999999987 78889999999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEE
Q 009188 296 VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
.|+.|+.||++..+.++.+.+|-+.|.|++.+|.-+.|++|+.|.++++||++++........|..+|..+.+.|-...+
T Consensus 213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeee
Q 009188 376 ITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (540)
++++.|++|++||+..+. .....|...+.+++.+|....+++++.| .|+-|++..+ .....+.+|...+..+..
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g-~f~~nlsgh~~iintl~~-- 368 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG-EFLQNLSGHNAIINTLSV-- 368 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc-chhhccccccceeeeeee--
Confidence 999999999999999877 6677889999999999999999988866 5899999877 556668888876554432
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCCCceeEeecC--------CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPG--------HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
. ...++++|+++|.+.+||.++|-..+.... ....|++.+|...+. .|+||..|.+|++|.-..
T Consensus 369 -n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~-rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 369 -N-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS-RLITGEADKTIKMYKEDE 440 (460)
T ss_pred -c-cCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCc-eEEeccCCcceEEEeccc
Confidence 3 446788999999999999999876655421 345789999999886 899999999999998654
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-37 Score=281.65 Aligned_cols=311 Identities=20% Similarity=0.362 Sum_probs=255.4
Q ss_pred ccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC
Q 009188 197 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~ 276 (540)
+.+++.|+.+.+|+ .+|.+....+..|..-|.|+.|+|||.++||++.||+|.|||=.++.....+..-.+|.
T Consensus 163 i~T~sdDn~v~ffe-------GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 163 IATGSDDNTVAFFE-------GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK 235 (603)
T ss_pred EEeccCCCeEEEee-------CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc
Confidence 45667777777774 45667778889999999999999999999999999999999987774333333334899
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEe------------------------------------------
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY------------------------------------------ 314 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------------ 314 (540)
+.|.+++|+||+..+++++.|.+++|||+.++++++++
T Consensus 236 GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 236 GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 99999999999999999999999999999887665543
Q ss_pred -ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee------------c------------------------
Q 009188 315 -EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK------------G------------------------ 357 (540)
Q Consensus 315 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~------------------------ 357 (540)
.+|...|+++..++++++|++|+.||.|.-|+..++....+. .
T Consensus 316 i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 316 ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 268889999999999999999999999999998543211100 0
Q ss_pred ---------------------------------------------cccceEEEEEEccCCCEEEEEecCCeEEEEECCCc
Q 009188 358 ---------------------------------------------QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK 392 (540)
Q Consensus 358 ---------------------------------------------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~ 392 (540)
.......+++++|++..+++|+.|+.+++|.+...
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 01112456888999999999999999999999874
Q ss_pred e----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC
Q 009188 393 V----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS 468 (540)
Q Consensus 393 ~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg 468 (540)
. .....|.++|+++++|||+.+|+++...+.+.+||..+.......+.-|... +.+..|+|+..++|+|+-|.
T Consensus 476 ~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak---I~~~aWsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 476 ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK---INCVAWSPNNKLVATGSLDT 552 (603)
T ss_pred cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee---EEEEEeCCCceEEEeccccc
Confidence 4 4667899999999999999999999999999999999875545555557766 44555699999999999999
Q ss_pred cEEEEECCCCce-eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 469 QVYIWHRASCDL-IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 469 ~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.|.||++..... +....+|...|+.+.|-.+. .++|.|.|..|++|++.
T Consensus 553 ~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 553 NVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDES--TVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEEEccChhhheEeccccccCceeEEEecCc--eEEeccCcceeEEeccc
Confidence 999999987543 45556799999999998654 79999999999999874
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-37 Score=256.75 Aligned_cols=289 Identities=20% Similarity=0.359 Sum_probs=250.5
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH 275 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h 275 (540)
.+.+.+.|.++++|.-. .+.+.++++...+.|+.+...|++++||+++. -.|++||++++.. .++.++.+|
T Consensus 12 iLvsA~YDhTIRfWqa~-------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h 82 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQAL-------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGH 82 (311)
T ss_pred EEEeccCcceeeeeehh-------cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEecc
Confidence 45667788888888543 47889999988899999999999999999986 5799999997654 478899999
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEE-E
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELE-C 354 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~ 354 (540)
.+.|+++.|..+|+.+++||.||+++|||++...+.+.+ .+.++|+++..+|+...|++|..+|.|++||+...... .
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 999999999999999999999999999999998777777 55589999999999999999999999999999776433 3
Q ss_pred eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009188 355 WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHL 426 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 426 (540)
........+.++.+.|||..++.+...|..++|++-+.. .++..|.+.+..+.+||++++|++++.|.+++|
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence 344455689999999999999999999999999987643 445678899999999999999999999999999
Q ss_pred EEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeC
Q 009188 427 WNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN 497 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 497 (540)
|+.++..+....+.+|...... +.| +.+|.||++|+.|+.+++||+..++.+....+|-....+++.+
T Consensus 242 wn~~~~~kle~~l~gh~rWvWd--c~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWD--CAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCceeeEEEeecCCceEEe--eee-ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9998876677778888765433 444 8899999999999999999999999999999998887777754
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-37 Score=305.53 Aligned_cols=293 Identities=29% Similarity=0.481 Sum_probs=261.4
Q ss_pred EEecccC-cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 224 LQILQGH-TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 224 ~~~l~~h-~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
...+.+| ...|.|+.|+|+|+++++++.|+.+++|+...... .....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 5555555 88999999999999999999999999999854421 255667899999999999999999999999999999
Q ss_pred EEC-CCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 303 WDV-SSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 303 wd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
||+ ..+.+++++.+|...|++++|+|+++.+++|+.|++|++||++++++......|...|++++|++++..+++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCceE----EEeecCC--ceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeecc
Q 009188 382 SALLLLDREAKVE----RYIEEDQ--TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455 (540)
Q Consensus 382 ~~i~~~d~~~~~~----~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 455 (540)
+.|++||..+... ....+.. +++++.|+|++.++++++.|+.+++||+... .....+.+|.....++......
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEeccccc
Confidence 9999999998772 2233333 5899999999999999999999999999987 7778888887765555555558
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCceeEeecCC-CCCeEEEEeCCCCCCEEEEEe--CCCcEEEecCC
Q 009188 456 LEQAFIASGSEDSQVYIWHRASCDLIGALPGH-SGAVNCVSWNPANPHMLASAS--DDRTIRIWGLK 519 (540)
Q Consensus 456 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~--~Dg~i~iw~~~ 519 (540)
+.+.++++|+.|+.|++||..++..+..+.+| ...+..++|+|..+ ++++++ .|+.|++|...
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 89999999999999999999999999999999 89999999999885 899988 79999999865
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-39 Score=285.87 Aligned_cols=283 Identities=18% Similarity=0.375 Sum_probs=247.2
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG 308 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 308 (540)
.-+-+|..+.|.|+|+.|++|+..|.+.+|+... +.....+..|..+|+++.|++++.++++|+.+|.|++|+.. .
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-m 169 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-M 169 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-h
Confidence 3456899999999999999999999999998632 23444567999999999999999999999999999999974 4
Q ss_pred eEEEEeecCC-CcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEE
Q 009188 309 NCLHVYEKAG-LGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLL 387 (540)
Q Consensus 309 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~ 387 (540)
..++.+..|. ..|++++|+|+...|++++.||+|+|||....+.......|.-.|.++.|+|....+++++.|..|++|
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW 249 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence 4455555554 899999999999999999999999999998777666678888899999999999999999999999999
Q ss_pred ECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee
Q 009188 388 DREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS 465 (540)
Q Consensus 388 d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s 465 (540)
|.+++. .....|+..|..+.|+|++++|++++.|..+++||+++. +.+..+.+|...+..+.+. .-...++.+|+
T Consensus 250 DprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~Wh--P~~~~lftsgg 326 (464)
T KOG0284|consen 250 DPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWH--PLNESLFTSGG 326 (464)
T ss_pred cCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccc--cccccceeecc
Confidence 999977 666789999999999999999999999999999999965 7788899999886665543 34567899999
Q ss_pred CCCcEEEEECCCCceeEee-cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 466 EDSQVYIWHRASCDLIGAL-PGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 466 ~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.||.|..|.+...+++..+ .+|.+.|++++|+|-| ++|++|+.|.++++|.-.
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccccc-eeEeecCCCcceeeeccC
Confidence 9999999999866666555 4799999999999999 599999999999999754
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-37 Score=258.61 Aligned_cols=272 Identities=19% Similarity=0.316 Sum_probs=231.5
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH 275 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h 275 (540)
-+++.+.|..+.+|..+.- +..-..+++.+.||...|..++.++||++.++++.|+++++||+..+ +..+.+.+|
T Consensus 30 ~l~sasrDk~ii~W~L~~d--d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---~~t~~f~GH 104 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSD--DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---ESTRRFVGH 104 (315)
T ss_pred eEEEcccceEEEEEEeccC--ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC---cEEEEEEec
Confidence 3466777888888876654 55567789999999999999999999999999999999999999876 567789999
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecC--CCcEEEEEEecC--CCEEEEEeCCCcEEEEecCCce
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA--GLGLVSCGWHPD--RKWIFSGANDKSICMWELGGKE 351 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 351 (540)
...|.+++|++|++.+++|+.|.+|++|++. |.+..++..+ ..-|.|+.|+|+ ..+|++++.|++|++||+++.+
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 9999999999999999999999999999975 4555555444 678999999997 7899999999999999999999
Q ss_pred EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 352 LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 352 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
+......|...++.++++|||...++|+.||.+.+||++.++ .....+...|.+++|+|+.-.|+.+. +..|+|||+.
T Consensus 184 l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~ 262 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLE 262 (315)
T ss_pred hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEecc
Confidence 999888999999999999999999999999999999999877 77788999999999999887776666 5559999998
Q ss_pred CCceeeeEeeC----C---cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 431 GEVKLVAKYKG----H---KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 431 ~~~~~~~~~~~----~---~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
+. ..+..++. . .....++. +.++++|..|++|-.|+.|++|.+.
T Consensus 263 ~~-~~v~~l~~d~~g~s~~~~~~~cls-laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 263 SK-AVVEELKLDGIGPSSKAGDPICLS-LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ch-hhhhhccccccccccccCCcEEEE-EEEcCCCcEEEeeecCCcEEEEEee
Confidence 76 44444331 1 12334444 4458999999999999999999864
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8e-36 Score=280.68 Aligned_cols=285 Identities=27% Similarity=0.478 Sum_probs=250.2
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD 304 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 304 (540)
+.+.+|.++|++++|+|++++|++++.||.+++|++... .....+..|...+..+.|+|+++++++++.+|.|++||
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC---CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 567799999999999999999999999999999999865 34566778999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeE
Q 009188 305 VSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
+.+++....+..|...+.++.|+++++++++++.+|.|.+||+++.........+...+.+++++|++..+++++.++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 99988888898898899999999998888888889999999998766666555666789999999999988888889999
Q ss_pred EEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEE
Q 009188 385 LLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462 (540)
Q Consensus 385 ~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 462 (540)
.+||..... .....+...+.+++|+|+++.+++++.++.+++||++.. .....+..+...... ..+++++.+++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~---~~~~~~~~~~~ 235 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNS---VAFSPDGYLLA 235 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEE---EEEcCCCcEEE
Confidence 999998654 444566778999999999999999999999999999876 666666666655433 33477788999
Q ss_pred EeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 463 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
+++.||.|++||+.+++....+.+|...|.+++|+|++. .+++++.||.|++|+
T Consensus 236 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 888899999999999999999999999999999999985 999999999999996
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-36 Score=273.86 Aligned_cols=277 Identities=19% Similarity=0.371 Sum_probs=250.2
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
..|++++|+.+|..||+|+.||.++||+.+. .+..++..|.++|.++.|+.+|.+|++++.|+++.+||..+|...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 5899999999999999999999999999763 366788899999999999999999999999999999999999999
Q ss_pred EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 312 HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 312 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
+.+.-|..+...+.|-.+ ..|++++.||.|+++.+....+.....+|.+.|.++.|+|.|..|++++.|+++++|....
T Consensus 312 q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 999999888788899755 4799999999999999987666666666888999999999999999999999999999766
Q ss_pred ce--EEEeecCCceeEEEEcCCC---------CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcE
Q 009188 392 KV--ERYIEEDQTITSFSLSRDN---------KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 392 ~~--~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 460 (540)
.. ..+..|...|..+.|+|.| ..+++++.|++|++||+..+ .++..|..|..+++.+.+ +|+|++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvaf---S~~g~y 466 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAF---SPNGRY 466 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEe---cCCCcE
Confidence 54 6667889999999999965 46899999999999999988 889999999999877665 899999
Q ss_pred EEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
+|+|+.||.|.+|+.++++.++.+.+ .+.|..++|+.+|. .|..+-.||.+++-|++
T Consensus 467 lAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~-kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGD-KLGACASDGSVCVLDLR 523 (524)
T ss_pred EEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCC-EEEEEecCCCceEEEec
Confidence 99999999999999999999999985 56799999999996 88888899999998875
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=265.53 Aligned_cols=300 Identities=21% Similarity=0.301 Sum_probs=260.9
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
..+..|..|+++|.+++.+|+.++++||+.|....+|++.++ .....+.+|.+.|+++.|+.+|.+||||+.+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 356788999999999999999999999999999999999876 46778899999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 302 RWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
||+..++.....+......+.-+.|+|.+..|++|+.||.+.+|.+.++........|..++++-.|.|+|+.++++..|
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 99999999888887777788999999999999999999999999998877777777788899999999999999999999
Q ss_pred CeEEEEECCCceEEEe---ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee--------CCcCCeeEEE
Q 009188 382 SALLLLDREAKVERYI---EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK--------GHKRSRFVIR 450 (540)
Q Consensus 382 ~~i~~~d~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~i~ 450 (540)
|+|++|+..+...... ......+++.++..+..++.|..++.+++-+..++ +.+.... .+.....++.
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc-eEEEecCCCCccccccchhhhhhhh
Confidence 9999999999763222 23556788899999999999999999988887666 5554444 3334444566
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
+..++..-.+.|+|+-||+|.|||+...++.+.+. |..+|+.+.|-+ .. +|++++.||.|+.||.++|+++..+.
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TD-YLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cc-hheeeccCceEEeeeccccceEEEEe
Confidence 66667777889999999999999999888877776 999999999998 43 89999999999999999999987643
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-37 Score=298.51 Aligned_cols=288 Identities=20% Similarity=0.351 Sum_probs=249.9
Q ss_pred cCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee
Q 009188 216 RDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG 295 (540)
Q Consensus 216 ~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 295 (540)
+...|.-++.++..-...++|+.|++|+++||.|-.|..|++|.+... .++.+++ ..+ ...+=+.+
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~----kl~~lk~-------~~~---l~~~d~~s 428 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK----KLKKLKD-------ASD---LSNIDTES 428 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh----hhccccc-------hhh---hccccccc
Confidence 356677777777777789999999999999999999999999998642 1112221 111 11222344
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEE
Q 009188 296 VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
.|-.+.+.|-.++...+++.+|.++|..+.|+|+.++|++++.|++|++|.+.+........+|..+|.++.|+|.|-++
T Consensus 429 ad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 429 ADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYF 508 (707)
T ss_pred cchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEE
Confidence 55557777777777778899999999999999999999999999999999999999888888999999999999999999
Q ss_pred EEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeee
Q 009188 376 ITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (540)
++++.|++.++|...... ..+.+|...+.|+.|+|++.|+++|+.|.++++||+.++ ..++.|.||..++..+..
T Consensus 509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~-- 585 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAF-- 585 (707)
T ss_pred EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEE--
Confidence 999999999999987754 667789999999999999999999999999999999988 789999999998666544
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
+|+|++|++|+.||.|.+||+.+++++..+.+|++.|+++.|+.+|. +||+||.|.+|++||+....
T Consensus 586 -Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 586 -SPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred -cCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhc
Confidence 89999999999999999999999999999999999999999999996 99999999999999987643
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=280.05 Aligned_cols=317 Identities=19% Similarity=0.380 Sum_probs=260.7
Q ss_pred cCCCCCCccccCCCcCc-CCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC
Q 009188 200 NSSDRDMSLYTDHQCGR-DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278 (540)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 278 (540)
....+.+.+|.-..... ...|....+++.||.+.|+++.|+.|.++|++||.|-+++||.++.... .....+.+|.++
T Consensus 113 v~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-~~~~~l~gHkd~ 191 (893)
T KOG0291|consen 113 VGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-LFTYALNGHKDY 191 (893)
T ss_pred EEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc-cceEeccCCCcc
Confidence 33444556665444333 4556677889999999999999999999999999999999999986654 345678899999
Q ss_pred eEEEEECcCCCeEEEeeCCCcEEEEECCC-----------------------CeE-------------------------
Q 009188 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSS-----------------------GNC------------------------- 310 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----------------------~~~------------------------- 310 (540)
|.+.-|..+...+++.+.||.+.+|.... ++.
T Consensus 192 VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa 271 (893)
T KOG0291|consen 192 VVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAA 271 (893)
T ss_pred eEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeee
Confidence 99999999999999999999999997650 110
Q ss_pred ----------------------------EEEeecCCCcEEEEEEecCCCEEEEEeCC-CcEEEEecCCceEEEeeccccc
Q 009188 311 ----------------------------LHVYEKAGLGLVSCGWHPDRKWIFSGAND-KSICMWELGGKELECWKGQRTL 361 (540)
Q Consensus 311 ----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~ 361 (540)
++.+.....+|..++|+..|++|+.|+.. |.+.+|+..+.........|..
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~ 351 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD 351 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc
Confidence 00001122456666777777777776654 6788888877777667778888
Q ss_pred eEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe
Q 009188 362 KISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 362 ~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 439 (540)
.+++++++|||.++++|+.||.|++||...+- ..+..|...++.+.|+..|+.+++.+.||+|+.||+... ...++|
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTf 430 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTF 430 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeee
Confidence 99999999999999999999999999999855 788899999999999999999999999999999999876 677777
Q ss_pred eCCcCCeeEEEeeeccCCCcEEEEeeCCC-cEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDS-QVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 440 ~~~~~~~~~i~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
....... ..+....|.|.++.+|+.|. .|++|++++|+++..+.||.++|.+++|+|.+. .|+|+|+|.+||+||+
T Consensus 431 t~P~p~Q--fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 431 TSPEPIQ--FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDI 507 (893)
T ss_pred cCCCcee--eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEe
Confidence 7766543 33444578899999999887 799999999999999999999999999999996 9999999999999998
Q ss_pred CCC
Q 009188 519 KDL 521 (540)
Q Consensus 519 ~~~ 521 (540)
-..
T Consensus 508 f~s 510 (893)
T KOG0291|consen 508 FSS 510 (893)
T ss_pred ecc
Confidence 554
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=285.90 Aligned_cols=305 Identities=22% Similarity=0.377 Sum_probs=251.4
Q ss_pred cceEEeccc-CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCC--eEEEeeCC
Q 009188 221 SRTLQILQG-HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ--QLLTCGVE 297 (540)
Q Consensus 221 ~~~~~~l~~-h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~d 297 (540)
.+.++.+++ |++||..++|+|.|..+++|+.||.+++||+..+ ...+.+++|.+.|.++.|+|+-. .|++|..|
T Consensus 94 gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~---~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 94 GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG---YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC---EEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 467778888 9999999999999999999999999999999866 68889999999999999999754 58999999
Q ss_pred CcEEEEECCCCe-EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE----------------------
Q 009188 298 EAVRRWDVSSGN-CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC---------------------- 354 (540)
Q Consensus 298 g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------- 354 (540)
+.+++||+.+.. ++..+..|.+.|++++|++|+..+++++.|..+.+||+...+...
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 999999998654 478888999999999999999999999999999999984211000
Q ss_pred -ee---c-------------------------------------------------------------------------
Q 009188 355 -WK---G------------------------------------------------------------------------- 357 (540)
Q Consensus 355 -~~---~------------------------------------------------------------------------- 357 (540)
+. .
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence 00 0
Q ss_pred --------------------------------cccceEEEEEEccCCCEEEEEecCCeEEEEEC----------------
Q 009188 358 --------------------------------QRTLKISDLEVTSDGKQIITMCKESALLLLDR---------------- 389 (540)
Q Consensus 358 --------------------------------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~---------------- 389 (540)
+|...|.++....+|-++++++.|.++++|.+
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH 410 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH 410 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc
Confidence 23333444443445556666666666666643
Q ss_pred -------------------------------CCce-------E----EEeecCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009188 390 -------------------------------EAKV-------E----RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLW 427 (540)
Q Consensus 390 -------------------------------~~~~-------~----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 427 (540)
.... . ....|+..|++++++|+.+.+++|+.|.+.++|
T Consensus 411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 2200 0 112367889999999999999999999999999
Q ss_pred EecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 428 NIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
+++.. .....+.+|...+.++.+ ++..+.++|+|.|++|+||.+.++.+++++.||...|..+.|-.++. .|+|+
T Consensus 491 ~le~~-~l~~vLsGH~RGvw~V~F---s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~-qliS~ 565 (775)
T KOG0319|consen 491 DLEQL-RLLGVLSGHTRGVWCVSF---SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK-QLISA 565 (775)
T ss_pred cccCc-eEEEEeeCCccceEEEEe---ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc-EEEec
Confidence 99955 899999999999877665 78889999999999999999999999999999999999999999896 89999
Q ss_pred eCCCcEEEecCCCCCccccc-cCCCce
Q 009188 508 SDDRTIRIWGLKDLNVKRKD-CHSNGV 533 (540)
Q Consensus 508 ~~Dg~i~iw~~~~~~~~~~~-~~~~~v 533 (540)
+.||-|++|+++++.+.... .|.+.|
T Consensus 566 ~adGliKlWnikt~eC~~tlD~H~Drv 592 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNECEMTLDAHNDRV 592 (775)
T ss_pred cCCCcEEEEeccchhhhhhhhhcccee
Confidence 99999999999999998874 444433
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.5e-35 Score=276.64 Aligned_cols=325 Identities=15% Similarity=0.339 Sum_probs=268.1
Q ss_pred hcccccCCCCCCccccCCCcCcCCCC-cceEEecccCcCcEEEEEEecCCCeEEEEeCC-CcEEEEEeecCCceEEEEEe
Q 009188 195 ACMFHNSSDRDMSLYTDHQCGRDQIP-SRTLQILQGHTDEVWFLQFSHNGKYLASSSND-RSAIIWEVDLNGGVTLKHKL 272 (540)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~d-g~i~iwd~~~~~~~~~~~~~ 272 (540)
.+.||....-.+.-|..........| ..+++.+.--..+|..++|+..|.+||.|+.. |.+-||++.+. ..+...
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sYVlKQ 346 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SYVLKQ 346 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ceeeec
Confidence 34444444433333444444333333 45667777777899999999999999998765 89999999866 556677
Q ss_pred cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ce
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KE 351 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~ 351 (540)
++|...+++++++|||+++|+|+.||.|+|||..+|-|..+|..|.+.|+.+.|+..|+.+++.+-||+|+.||+.. ..
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999965 44
Q ss_pred EEEeeccccceEEEEEEccCCCEEEEEecCC-eEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 352 LECWKGQRTLKISDLEVTSDGKQIITMCKES-ALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 352 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
...+..+...+..+++..|.|..+++|+.|. .|.+|+..+++ ....+|+++|.+++|+|++..|++++.|.+|++||
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 5556666666789999999999999999876 59999999988 55678999999999999999999999999999999
Q ss_pred ecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC--------------------CC
Q 009188 429 IEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG--------------------HS 488 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------------h~ 488 (540)
+-.....+.++..... .+...+ .|+|+-+++++-||.|.+||...+..+..+.+ ..
T Consensus 507 if~s~~~vEtl~i~sd---vl~vsf-rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~ 582 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRSD---VLAVSF-RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKG 582 (893)
T ss_pred eeccCceeeeEeeccc---eeEEEE-cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccC
Confidence 9766455566554433 233333 89999999999999999999887666544432 23
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc
Q 009188 489 GAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 489 ~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
...+.+++++||. .+++||....|++|++.++-++++.
T Consensus 583 K~Ftti~ySaDG~-~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 583 KTFTTICYSADGK-CILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred CceEEEEEcCCCC-EEEecCCcccEEEEECchhheeeeE
Confidence 5789999999996 9999999999999999999888764
No 29
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=268.64 Aligned_cols=281 Identities=18% Similarity=0.297 Sum_probs=243.3
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
...|+++...|..+.++||+.|..+.++|...+ +.+..+.||...|+.+.|+|+...+++++.|..|+||......+
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 357888888888789999999999999998866 67788999999999999999999999999999999999988888
Q ss_pred EEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc--ccceEEEEEEccCCCEEEEEecCCeEEEEE
Q 009188 311 LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ--RTLKISDLEVTSDGKQIITMCKESALLLLD 388 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d 388 (540)
......|..+|+.+..+|.|.||++++.||+..+.|++++........ ....+++.+|+|||..+.+|..||.+++||
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 888889999999999999999999999999999999987766554433 334689999999999999999999999999
Q ss_pred CCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC
Q 009188 389 REAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE 466 (540)
Q Consensus 389 ~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~ 466 (540)
+..+. ..+..|.++|..++|+.+|-++++++.|+.|++||++.. +..+++...... .+....+.+.|.+++.++.
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~--~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKK--EVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeeccccc--cceeEEEcCCCCeEEeecc
Confidence 98866 677789999999999999999999999999999999976 455555544332 2333344889999999988
Q ss_pred CCcEEEEEC--CCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 467 DSQVYIWHR--ASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 467 dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
|=+|++++- .++..+..+..|.+..+.+.|.... ++++++|.|..++++.+
T Consensus 453 ~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYAL 505 (506)
T ss_pred eeEEEEEecccccceeeehhhhcccccceeeecccc-eEEeeccchhheEEeec
Confidence 877777773 3577888888899999999999877 59999999999998864
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=244.49 Aligned_cols=267 Identities=18% Similarity=0.301 Sum_probs=236.1
Q ss_pred EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEec
Q 009188 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
..+++++|.+.|.++.|++|+++|++++.||.+.|||.-+....+.++.....|..++|+|.|+++++|+-|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc------eEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcC-CCCEEEEE
Q 009188 348 GGK------ELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSR-DNKFLLVN 418 (540)
Q Consensus 348 ~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~ 418 (540)
.+. ........|...+.+..|.+ ...+++++.|.+..+||+++.+ ..+.+|.+.|.+++++| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 754 34556778888999999988 5678999999999999999977 66778999999999999 99999999
Q ss_pred ecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC--CCCCeEEEEe
Q 009188 419 LLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG--HSGAVNCVSW 496 (540)
Q Consensus 419 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~ 496 (540)
+.|+..++||++.+ ..++.|.+|...+..+++ -|+|.-+++|++|++.++||++..+.+..+.. -..+|++++|
T Consensus 206 ~cD~~aklWD~R~~-~c~qtF~ghesDINsv~f---fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSG-QCVQTFEGHESDINSVRF---FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred ccccceeeeeccCc-ceeEeecccccccceEEE---ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 99999999999998 899999999998666554 68999999999999999999999998888773 2368999999
Q ss_pred CCCCCCEEEEEeCCCcEEEecCCCCCcccc-ccCCCce---EeccCCC
Q 009188 497 NPANPHMLASASDDRTIRIWGLKDLNVKRK-DCHSNGV---HYCNGGT 540 (540)
Q Consensus 497 ~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~-~~~~~~v---~~c~~g~ 540 (540)
+..|. +|++|..|.++.+||.-.++.... ..|.|.| ..+++|+
T Consensus 282 S~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 282 SKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred ccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCc
Confidence 99995 999999999999999988877665 4555554 4555554
No 31
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4e-35 Score=250.74 Aligned_cols=347 Identities=20% Similarity=0.375 Sum_probs=266.2
Q ss_pred CCCCCCcChhHHHHHHHHHHHHHHhhcccccCCC---------CCCcc-ccCCCcC-cCCCCcceEEecccCcCcEEEEE
Q 009188 170 LPPMIMIPERRLEHLVEQALVLQREACMFHNSSD---------RDMSL-YTDHQCG-RDQIPSRTLQILQGHTDEVWFLQ 238 (540)
Q Consensus 170 ~~~~~~~p~~rl~~ll~~~~~~q~~~~~~~~~~~---------~~~~~-~~~~~~~-~~~~~~~~~~~l~~h~~~V~~~~ 238 (540)
.|.....|++||..++....+..........+.. ..+.+ |+.+... ...++.-....+..|++++.+.+
T Consensus 40 ~~~~~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aa 119 (430)
T KOG0640|consen 40 TPANICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAA 119 (430)
T ss_pred CcCCCCCCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeeee
Confidence 4555667899999998877765544333222211 11222 2212222 22233344567889999999999
Q ss_pred EecCCCeEEEEeCCCcEEEEEeec---------------CCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 239 FSHNGKYLASSSNDRSAIIWEVDL---------------NGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 239 ~sp~g~~l~tg~~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
|+|||.++|||+.|..|+|.|++. ...-..++++-.|.++|+++.|+|....|++|+.|++|+++
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF 199 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF 199 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE
Confidence 999999999999999999999861 11224678889999999999999999999999999999999
Q ss_pred ECCCCeEEEEee--cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe---eccccceEEEEEEccCCCEEEEE
Q 009188 304 DVSSGNCLHVYE--KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW---KGQRTLKISDLEVTSDGKQIITM 378 (540)
Q Consensus 304 d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~ 378 (540)
|+......+.++ ....+|.++.|+|.|.++++|..-.++++||+++.++... ...|...|+++.+++.|+..+++
T Consensus 200 DfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa 279 (430)
T KOG0640|consen 200 DFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTA 279 (430)
T ss_pred ecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEe
Confidence 997654333332 3456899999999999999999999999999998776543 34566789999999999999999
Q ss_pred ecCCeEEEEECCCce-EEEe---ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC---CeeEEEe
Q 009188 379 CKESALLLLDREAKV-ERYI---EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR---SRFVIRS 451 (540)
Q Consensus 379 ~~d~~i~~~d~~~~~-~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~ 451 (540)
+.||.|++||--... ...+ .....|++..|..+++|+++.+.|..+++|.+.++ +++..+.+... .......
T Consensus 280 SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCcccchhhhhhh
Confidence 999999999965544 2222 34568999999999999999999999999999988 78888876532 2222334
Q ss_pred eeccCCCcEEEEee-CCCcEEEEECCCCceeEeec-CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 452 CFGGLEQAFIASGS-EDSQVYIWHRASCDLIGALP-GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 452 ~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.| +....|++.-. ..+.+.-||.+++..+..+. +|++.+..+.-+|.++ .++|||+|..+|+|--+
T Consensus 359 vF-NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 359 VF-NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred hh-cCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 44 44555665544 35689999999987765543 7999999999999998 89999999999999643
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.1e-34 Score=302.35 Aligned_cols=285 Identities=18% Similarity=0.324 Sum_probs=234.2
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecC----Cce-EEEEEecCCCCCeEEEEECc-CCCeEEEeeCCCcE
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN----GGV-TLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAV 300 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~----~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i 300 (540)
+.+|.+.|++++|+|+|++||+|+.|+.|+||+.... ... .....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997531 000 1122233 456799999987 47899999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEc-cCCCEEEEE
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVT-SDGKQIITM 378 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~ 378 (540)
++||+.+++.+..+..|...|++++|+| ++.+|++|+.||.|++||++++........+ ..+.++.|+ +++..+++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7889999999999999999876655444433 478899995 579999999
Q ss_pred ecCCeEEEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC-----ceeeeEeeCCcCCeeEEE
Q 009188 379 CKESALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE-----VKLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 379 ~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~i~ 450 (540)
+.|+.|++||.+... .....|...|.++.|. ++.++++++.|+.|++||++.. ..++..+.+|...+..+
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v- 714 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV- 714 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE-
Confidence 999999999998643 4556788899999997 7889999999999999999742 24567788887764443
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECCCCceeEee-------------cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL-------------PGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.+++++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+|++. .|++|+.||.|+||+
T Consensus 715 --~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~ 791 (793)
T PLN00181 715 --GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILE 791 (793)
T ss_pred --EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEe
Confidence 34788999999999999999998766544222 23456799999999996 899999999999998
Q ss_pred C
Q 009188 518 L 518 (540)
Q Consensus 518 ~ 518 (540)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 6
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=250.44 Aligned_cols=305 Identities=16% Similarity=0.235 Sum_probs=249.5
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
.+++.|....+|+.+. ......+.||++.|+|+.||.+|.+||||+.+|.|+||+..++ .....+...-+
T Consensus 80 aTGGgDD~AflW~~~~-------ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg---~~~~~~~~e~~ 149 (399)
T KOG0296|consen 80 ATGGGDDLAFLWDIST-------GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG---GEQWKLDQEVE 149 (399)
T ss_pred EecCCCceEEEEEccC-------CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC---ceEEEeecccC
Confidence 4556666667776543 4567889999999999999999999999999999999999876 33444545567
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG 357 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 357 (540)
.+.=+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|++||+.++.......
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence 78889999999999999999999999999988899999999999999999999999999999999999998876655443
Q ss_pred -cccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe----------ecCCceeEEE---EcCCCCEEEEEecCCe
Q 009188 358 -QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI----------EEDQTITSFS---LSRDNKFLLVNLLNQE 423 (540)
Q Consensus 358 -~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------~~~~~i~~~~---~s~~~~~l~~~~~dg~ 423 (540)
.......++.++..+..++.|+.++.+.+.+..+++.... .+...+.++. ++..=.+.++|+.||+
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~ 309 (399)
T KOG0296|consen 230 QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT 309 (399)
T ss_pred ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccce
Confidence 2334577888899999999999999888887766552221 2333444444 4445578899999999
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCE
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHM 503 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 503 (540)
|.|||+... .++..-.|...+ +...| -+ ..+|++++.||.|+.||.++|+++.++.||...|.+++++|+.+ +
T Consensus 310 i~iyD~a~~--~~R~~c~he~~V--~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~-~ 382 (399)
T KOG0296|consen 310 IAIYDLAAS--TLRHICEHEDGV--TKLKW-LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR-L 382 (399)
T ss_pred EEEEecccc--hhheeccCCCce--EEEEE-cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCc-E
Confidence 999999864 334444555554 33444 33 67899999999999999999999999999999999999999985 9
Q ss_pred EEEEeCCCcEEEecCC
Q 009188 504 LASASDDRTIRIWGLK 519 (540)
Q Consensus 504 l~s~~~Dg~i~iw~~~ 519 (540)
++|+|.|++.+||++.
T Consensus 383 vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCCCeEEEEecC
Confidence 9999999999999875
No 34
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=245.05 Aligned_cols=289 Identities=22% Similarity=0.393 Sum_probs=252.3
Q ss_pred EecccCcCcEEEEEEec---CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 225 QILQGHTDEVWFLQFSH---NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp---~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
.+..||+.+|-.++||| +|-+|++++.||.-.+-+-+++ ..+-++.+|.+.|.+.+.+.+...-++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg---dwigtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG---DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC---CcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 45679999999999996 8889999999999888766655 56788999999999999999988999999999999
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce-EEEeeccccceEEEEEEccCCCEEEEEec
Q 009188 302 RWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE-LECWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
+||.-+|..+..+ .|..-|..++|+.|.++|++|+.+..+++||++..+ .......+...|+.+.|....+.+++...
T Consensus 85 vw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 85 VWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 9999999999998 688899999999999999999999999999997533 33345567779999999999999999999
Q ss_pred CCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc
Q 009188 381 ESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 381 d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 459 (540)
|++|++||.++.. ...+..+.+++++.++++|+++.++. .+.|.+||..+- .+++.+..... +.....+|+..
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~P~n----V~SASL~P~k~ 237 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKMPCN----VESASLHPKKE 237 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccCccc----cccccccCCCc
Confidence 9999999999977 77778899999999999999877665 678999999876 55665554433 44555588899
Q ss_pred EEEEeeCCCcEEEEECCCCceeEee-cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 460 FIASGSEDSQVYIWHRASCDLIGAL-PGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
++++|++|+.++.||..++..+..+ ++|.++|.++.|+|+|. +.++||.||+|++|.+.-++..
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999886 89999999999999997 9999999999999998766544
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-33 Score=254.57 Aligned_cols=330 Identities=18% Similarity=0.310 Sum_probs=270.7
Q ss_pred cccccCCCCCCccccCCCcC--cCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec
Q 009188 196 CMFHNSSDRDMSLYTDHQCG--RDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS 273 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 273 (540)
+++...+...-.+|....+. +.--.......+.+|...++-..|||.|.|+|+|...|+|+|||... ....+...++
T Consensus 22 ~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~-~~hiLKnef~ 100 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ-KEHILKNEFQ 100 (603)
T ss_pred eEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccC-cceeeeeeee
Confidence 34444455555555544432 22223445678889999999999999999999999999999999863 3445667788
Q ss_pred CCCCCeEEEEECcCCCeEEEeeCC----CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC-EEEEEeCCCcEEEEecC
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCGVE----EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK-WIFSGANDKSICMWELG 348 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 348 (540)
.-.++|..++|+++++.|++.+.. |.+..|| +|..+..+.+|...|.++.|-|... .+++|+.|++|.+|+-.
T Consensus 101 v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP 178 (603)
T KOG0318|consen 101 VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP 178 (603)
T ss_pred ecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC
Confidence 889999999999999999988743 2355555 7888999999999999999999655 68999999999999977
Q ss_pred CceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEE---eecCCceeEEEEcCCCCEEEEEecCCe
Q 009188 349 GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERY---IEEDQTITSFSLSRDNKFLLVNLLNQE 423 (540)
Q Consensus 349 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~ 423 (540)
-.+.......|...|.++.|+|||.++++++.||++.+||-.++. ..+ ..|.+.|.+++|+||++.+++++.|.+
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence 777777777888899999999999999999999999999988866 222 368999999999999999999999999
Q ss_pred EEEEEecCCceeeeEeeCCcC-CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCC
Q 009188 424 IHLWNIEGEVKLVAKYKGHKR-SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH 502 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 502 (540)
++|||+.+. .+++++..... ....+.+.+ . ...|++.+.+|+|.+++...+.++..+.||...|+++..+|++.
T Consensus 259 ~KIWdVs~~-slv~t~~~~~~v~dqqvG~lW-q--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~- 333 (603)
T KOG0318|consen 259 IKIWDVSTN-SLVSTWPMGSTVEDQQVGCLW-Q--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK- 333 (603)
T ss_pred EEEEEeecc-ceEEEeecCCchhceEEEEEE-e--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-
Confidence 999999988 77777765443 233444544 3 56788999999999999999999999999999999999999995
Q ss_pred EEEEEeCCCcEEEecCCCCCcccc--ccCCCce
Q 009188 503 MLASASDDRTIRIWGLKDLNVKRK--DCHSNGV 533 (540)
Q Consensus 503 ~l~s~~~Dg~i~iw~~~~~~~~~~--~~~~~~v 533 (540)
.|+||+.||.|.-|+..++..-+. ..|.+.|
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEEeeccCceEEEEecCCccccccccccccceE
Confidence 999999999999999999877654 3444433
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-35 Score=255.63 Aligned_cols=267 Identities=16% Similarity=0.288 Sum_probs=237.1
Q ss_pred EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 009188 267 TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 346 (540)
.....+.+|..+|+.+-|+|+-..+++++.|++|++||..+|++...+++|...+.++.|+..|+++++++.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCe
Q 009188 347 LGG-KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQE 423 (540)
Q Consensus 347 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 423 (540)
..+ .........|...|.+++|-|.|.++++++.|.+|+.|+..++. ..+.+|...+..+..+.||.++++++.|.+
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 976 44444556677789999999999999999999999999999977 666788889999999999999999999999
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeecc------------CCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCe
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG------------LEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAV 491 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 491 (540)
+++|-+.+. .....+..|..++.++.+.... ..+.++.+++.|++|++||+.+|.++.++.+|...|
T Consensus 259 l~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 259 LRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred EEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee
Confidence 999999877 6667778888777776654321 134699999999999999999999999999999999
Q ss_pred EEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCceEe
Q 009188 492 NCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVHY 535 (540)
Q Consensus 492 ~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v~~ 535 (540)
.+++|+|.|. +|+|+.+|+++++||++++++++....+..+..
T Consensus 338 r~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt 380 (406)
T KOG0295|consen 338 RGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVT 380 (406)
T ss_pred eeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeE
Confidence 9999999885 999999999999999999999987665555533
No 37
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=4.4e-36 Score=266.17 Aligned_cols=299 Identities=22% Similarity=0.369 Sum_probs=255.4
Q ss_pred CCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeE
Q 009188 212 HQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL 291 (540)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 291 (540)
..|..+..|......+..|.+.|..+.|-++...|++|+.|..|++|+...+ +.....++.+..++|+++.|.+++.++
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceE
Confidence 4566788999999999999999999999999899999999999999998754 355777888999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC
Q 009188 292 LTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 292 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
++++.|+.+++|++.+.+...++.+|...|+++.|......+++|+.|.+|+.||+....+....... ..+.+|..+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-- 311 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-- 311 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--
Confidence 99999999999999999999999999999999999987777999999999999999775554333222 356666665
Q ss_pred CCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc--CCeeE
Q 009188 372 GKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK--RSRFV 448 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~ 448 (540)
...+++|..|++|++||.++.. .......+.|+++..++++..+++++.|.++.+.|+++. .+...+.... ...-.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeecccccccccc
Confidence 5678888999999999988766 566677789999999999999999999999999999987 5555554322 12222
Q ss_pred EEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCC--CeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 449 IRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSG--AVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.+.+| +|++.|+++||.||.|+||++.++++...+..... .|++++|+|.|. .+++++.++.+.+|.
T Consensus 391 trvvf-Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~-~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVF-SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS-GLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEE-CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc-hhhcccCCcceEecC
Confidence 33444 99999999999999999999999999988876544 599999999996 899999999999994
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-34 Score=276.66 Aligned_cols=208 Identities=20% Similarity=0.355 Sum_probs=196.7
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
.....+-||.++|..+.|+|+.++|+++|.|+++++|.+.+. ...-.+.+|..||.++.|+|.|-++||+|.|++.+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 446679999999999999999999999999999999999866 56677889999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 302 RWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
+|......+.+.+.+|-+.|.|+.|+|+..++++|+.|.+|++||+.++...+.+.+|..+|.+++|+|+|++|++|+.|
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred CeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 382 SALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 382 ~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
|.|.+||+.++. ....+|.+.|.++.|+.+|..|++|+.|+.|++||+...
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999866 677788999999999999999999999999999998754
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-33 Score=235.17 Aligned_cols=284 Identities=17% Similarity=0.315 Sum_probs=235.1
Q ss_pred ecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 226 ~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
.++||..+++.+.|+.+|.+|++++.|.++.+|-...+ +.+-++.+|.+.|+|+..+.+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 57899999999999999999999999999999987655 678899999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-----CcEEEEecC-------CceEEEeeccccceEEEEEEccCCC
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND-----KSICMWELG-------GKELECWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~-------~~~~~~~~~~~~~~v~~i~~~~~~~ 373 (540)
++|+++..++. +.+|..+.|+++|++++.+..+ +.|.++|++ +.++......+...++.+-|.|-++
T Consensus 82 ~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 82 ETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 99999999854 5589999999999988876543 579999997 3443444445557899999999999
Q ss_pred EEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEE
Q 009188 374 QIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 450 (540)
.+++|..+|.|..||.+++. .....|...|+.++++++..++++++.|.+-++||..+. ..++++..... +.
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~P----vN 235 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERP----VN 235 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeeccc----cc
Confidence 99999999999999999865 333468889999999999999999999999999999987 77777765543 33
Q ss_pred eeeccCCCcEEEEeeCCCc--------------EEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 451 SCFGGLEQAFIASGSEDSQ--------------VYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~--------------i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
+...+|....++.|+.... -++|++-..+.+..+++|-++|++++|+|+|. ..+|||.||.||+.
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SYSSGGEDGYVRLH 314 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-ccccCCCCceEEEE
Confidence 3344666666666553221 12223333345667889999999999999997 89999999999997
Q ss_pred cCC
Q 009188 517 GLK 519 (540)
Q Consensus 517 ~~~ 519 (540)
.+.
T Consensus 315 ~Fd 317 (327)
T KOG0643|consen 315 HFD 317 (327)
T ss_pred Eec
Confidence 654
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=233.66 Aligned_cols=286 Identities=21% Similarity=0.389 Sum_probs=243.3
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iw 303 (540)
+.+++|...|.+++|+.+|..|++|+.|+++.+|+++.. .........+|.+.|-.++|+| ....+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567789999999999999999999999999999999855 3334455679999999999998 45789999999999999
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCe
Q 009188 304 DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
|++++++..........+ -+.|+|+|+++++++.|..|.+.|.++.+........ ..+..++|+.++..++.....|+
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc-ceeeeeeecCCCCEEEEecCCce
Confidence 999999999987776665 4789999999999999999999999877665544433 37888999988888888888899
Q ss_pred EEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEE
Q 009188 384 LLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI 461 (540)
Q Consensus 384 i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 461 (540)
|.|.....-+ .....|.....++.|+|+|+++++|+.|..+.+||+... .+.+.+..+.-+ ++...++.+|++|
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwp---VRTlSFS~dg~~l 246 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWP---VRTLSFSHDGRML 246 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCc---eEEEEeccCccee
Confidence 9998877643 666778889999999999999999999999999999866 666777766665 4445558899999
Q ss_pred EEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCC---------CcEEEecCC
Q 009188 462 ASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDD---------RTIRIWGLK 519 (540)
Q Consensus 462 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D---------g~i~iw~~~ 519 (540)
|+||+|..|-|=++.+|..+..++ +.++-..|+|+|... +||-+++| |+|++|-+.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence 999999999999999999999998 889999999999886 88777654 567776654
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-35 Score=256.35 Aligned_cols=272 Identities=19% Similarity=0.383 Sum_probs=233.1
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
....|+|+.+ |...+++|..|++|+|||.+.- .+...+.||++.|.|+.|. .+.+++|+.|.+|+|||+++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 4578999998 5567999999999999998644 6777899999999999995 5699999999999999999999
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce---EEEeeccccceEEEEEEccCCCEEEEEecCCeEEE
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE---LECWKGQRTLKISDLEVTSDGKQIITMCKESALLL 386 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~ 386 (540)
++.++-.|...|..+.|+ +.++++++.|.++.+||+.... +.....+|...|+.+.|+ .+++++++.|.+|++
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 999999999999999997 4599999999999999996533 333455677788888886 459999999999999
Q ss_pred EECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe
Q 009188 387 LDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG 464 (540)
Q Consensus 387 ~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 464 (540)
|+..+.. ....+|...|.|+.+ .++++++|+.|.+|++||+..+ .+++.+.+|..-+-++++ +.+.+++|
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRF-----d~krIVSG 416 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF-----DNKRIVSG 416 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheee-----cCceeeec
Confidence 9999977 455578888888777 7899999999999999999988 889999999987666654 66889999
Q ss_pred eCCCcEEEEECCCCc---------eeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCc
Q 009188 465 SEDSQVYIWHRASCD---------LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 465 s~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
+.||+|++||+..+. ++.++..|++.|..+.|.. ..+++++.|.+|.|||+-++-.
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEEcCCCCc
Confidence 999999999987653 3455667999999999954 5799999999999999987643
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-33 Score=258.84 Aligned_cols=304 Identities=15% Similarity=0.241 Sum_probs=263.8
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD 304 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 304 (540)
+.+..|++.|.++.|+|...+++++-.+|.|.||+.++. ...+.+.-..-||++..|-+..+.+++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 445569999999999999999999999999999999876 56677888889999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEEEeeccccceEEEEEEcc-CCCEEEEEecCC
Q 009188 305 VSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELECWKGQRTLKISDLEVTS-DGKQIITMCKES 382 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~ 382 (540)
..+++.++.|..|...|.+++.+|...++++++.|-+|++||.+. -.+.+...+|...|.+++|+| |.+.+++++-|+
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 999999999999999999999999999999999999999999964 566778888999999999998 558899999999
Q ss_pred eEEEEECCCce--EEEeecCCceeEEEEcCCC--CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCC
Q 009188 383 ALLLLDREAKV--ERYIEEDQTITSFSLSRDN--KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 383 ~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
+|++|.+.... ..+.+|...|+++++-+.| .++++|+.|..+++||.++. .+++++.+|...+ .+.++.|.-
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nv---s~v~fhp~l 239 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNV---SFVFFHPEL 239 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccc---eEEEecCCC
Confidence 99999998866 6777999999999998855 79999999999999999988 8999999999874 445558889
Q ss_pred cEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCceEecc
Q 009188 459 AFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVHYCN 537 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v~~c~ 537 (540)
.++++|++||+++||+..+-++..++.-.-..|++++-.+.+. .++.|.+.|.|. .++...+..-.....+.+.|..
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~-~i~vG~Deg~i~-v~lgreeP~vsMd~~gKIiwa~ 316 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDG-KIAVGFDEGSVT-VKLGREEPAVSMDSNGKIIWAV 316 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCC-eEEEeccCCcEE-EEccCCCCceeecCCccEEEEc
Confidence 9999999999999999999998888887788999999988775 677777776654 4555544444444444454443
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=246.66 Aligned_cols=253 Identities=18% Similarity=0.298 Sum_probs=231.5
Q ss_pred eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 009188 266 VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 345 (540)
Q Consensus 266 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 345 (540)
+++.+.+.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+|+...++.+|-..|..+++++-..++++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCe
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQE 423 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 423 (540)
|+...++.+....|-+.|.+++..|.-..+++++.|.++++||++++. ....+|..+|.++.+.|....+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999988888888888899999999999999999999999999999976 566679999999999999999999999999
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCE
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHM 503 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 503 (540)
|++||++.+ +....+..|... +++....|....+|+++.| .|+-|++..|..+..+.+|..-|++++.+.|+ +
T Consensus 301 vrlWDl~ag-kt~~tlt~hkks---vral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~--v 373 (460)
T KOG0285|consen 301 VRLWDLRAG-KTMITLTHHKKS---VRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG--V 373 (460)
T ss_pred EEEeeeccC-ceeEeeecccce---eeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc--e
Confidence 999999988 666777777765 4555558888899999887 59999999999999999999999999999887 8
Q ss_pred EEEEeCCCcEEEecCCCCCccc
Q 009188 504 LASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 504 l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
+++|++.|.+.+||.++|...+
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred EEEcCCceEEEEEecCcCcccc
Confidence 9999999999999999986544
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=262.54 Aligned_cols=266 Identities=17% Similarity=0.356 Sum_probs=244.5
Q ss_pred EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC
Q 009188 269 KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG 348 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 348 (540)
.+++..++..|.++.|+|....++++-.+|.|.|||.++...++.+.....+|.+..|-+..+++++|+.|..|++|+.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcC-CCCEEEEEecCCeE
Q 009188 349 GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSR-DNKFLLVNLLNQEI 424 (540)
Q Consensus 349 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i 424 (540)
+.+.......|...|++++.+|...++++++.|-+|++||....- ..+.+|...|.+++|+| |.+.+++++-|++|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 999988888899999999999999999999999999999998864 77788999999999999 56899999999999
Q ss_pred EEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEE
Q 009188 425 HLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHML 504 (540)
Q Consensus 425 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 504 (540)
++|.+... .+..++.+|...+.++.... ..+..++++|+.|.+|+|||..+..++.++.||...|..+.|+|.-+ ++
T Consensus 166 KVWslgs~-~~nfTl~gHekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-ii 242 (794)
T KOG0276|consen 166 KVWSLGSP-HPNFTLEGHEKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-II 242 (794)
T ss_pred EEEEcCCC-CCceeeeccccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-EE
Confidence 99999887 78899999999988876654 56778999999999999999999999999999999999999999998 99
Q ss_pred EEEeCCCcEEEecCCCCCccccccCCCceEecc
Q 009188 505 ASASDDRTIRIWGLKDLNVKRKDCHSNGVHYCN 537 (540)
Q Consensus 505 ~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v~~c~ 537 (540)
+|||.||+||||+-.+-++........+-.||-
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI 275 (794)
T ss_pred EEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence 999999999999999988877666555556663
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.9e-33 Score=243.87 Aligned_cols=288 Identities=20% Similarity=0.337 Sum_probs=241.1
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCC---eEEEeeC
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ---QLLTCGV 296 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~---~l~s~~~ 296 (540)
|++++..+. |.+.|.++... ++.+++|+.||.+++||.. + +....+.+|.++|.+++|.-.+. .|++++.
T Consensus 95 aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 95 APKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-G---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecC-C---ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 444554444 99999999987 7799999999999999976 3 46778899999999999865443 5999999
Q ss_pred CCcEEEEECCCCeE----EEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-----------------------
Q 009188 297 EEAVRRWDVSSGNC----LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG----------------------- 349 (540)
Q Consensus 297 dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------- 349 (540)
|.++++|.++.++. ++.-.+|...|-++...++|..+++|+.|..|++|+..+
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 99999999887643 344459999999999999999999999999999999321
Q ss_pred --ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009188 350 --KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHL 426 (540)
Q Consensus 350 --~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 426 (540)
+.......+|..+|.++.|++ ...+++++.|.+|+.||+.+.. .........++++..+|..++|++|+.|..+++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceee
Confidence 112334557788999999998 7789999999999999999876 666677889999999999999999999999999
Q ss_pred EEecCC--ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc-eeEeecCCCCCeEEEEeCCCCCCE
Q 009188 427 WNIEGE--VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD-LIGALPGHSGAVNCVSWNPANPHM 503 (540)
Q Consensus 427 ~d~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~ 503 (540)
||.+++ ......+.+|.+.+..+.++ ..+...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+..+ .
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVssvkws--p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~--~ 402 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSSVKWS--PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG--L 402 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhheecC--CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc--e
Confidence 999865 34567788999865554443 3455678999999999999999887 999999999999999998643 8
Q ss_pred EEEEeCCCcEEEecCC
Q 009188 504 LASASDDRTIRIWGLK 519 (540)
Q Consensus 504 l~s~~~Dg~i~iw~~~ 519 (540)
++|||.|.+|+|+.-.
T Consensus 403 IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 403 IVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccCcceEEEeccc
Confidence 9999999999998754
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-32 Score=259.46 Aligned_cols=306 Identities=22% Similarity=0.375 Sum_probs=261.0
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
....-++.||+..|+++.|+..|..|++||.|+.|.+||+-.. .-...+.+|.+.|+..-|..+.+++++++.|+.|
T Consensus 97 ~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E---~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~i 173 (888)
T KOG0306|consen 97 EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE---EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMI 173 (888)
T ss_pred CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc---eeeEEeecchHHHhHHhccCCCeEEEEeccCceE
Confidence 3677889999999999999999999999999999999999754 4556789999999999999889999999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC----------------c---------eEEEe
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG----------------K---------ELECW 355 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~---------~~~~~ 355 (540)
++||+++..|..+.-.|...++.+++++ +.+++++.|+.+++|++.. + .....
T Consensus 174 K~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 174 KFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred EEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 9999999999999999999999999987 6889999999999999810 0 00000
Q ss_pred ----------ec--------------------------------------------------------------------
Q 009188 356 ----------KG-------------------------------------------------------------------- 357 (540)
Q Consensus 356 ----------~~-------------------------------------------------------------------- 357 (540)
..
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 009188 358 -------------------------------------------------------------------------------- 357 (540)
Q Consensus 358 -------------------------------------------------------------------------------- 357 (540)
T Consensus 332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec
Confidence
Q ss_pred ----------------------------------------cccceEEEEEEccCCCEEEEEecCCeEEEEECCCce----
Q 009188 358 ----------------------------------------QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---- 393 (540)
Q Consensus 358 ----------------------------------------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---- 393 (540)
.|.+.+.+++.+||++.+++|+.|.+|++||..-..
T Consensus 412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 456678888889999999999999999999854211
Q ss_pred ----------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE
Q 009188 394 ----------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 394 ----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
.+.......|.++.+||||++++++--|+++++|-+.+- +..-.+.||.-++.++.. +|+++.++|
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDI---S~DSklivT 567 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDI---SPDSKLIVT 567 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEec---cCCcCeEEe
Confidence 134456778999999999999999999999999999887 777788899988665554 889999999
Q ss_pred eeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCceEec
Q 009188 464 GSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVHYC 536 (540)
Q Consensus 464 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v~~c 536 (540)
||.|.+|+||-+.-|.+-+.+-+|.+.|.++.|.|.. +++.|+|.|+.|+-||-...+.+++...+..-.+|
T Consensus 568 gSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred ccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence 9999999999999999999999999999999999976 69999999999999999998888875554444444
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=270.87 Aligned_cols=249 Identities=27% Similarity=0.479 Sum_probs=214.9
Q ss_pred EEecc-cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecC-----------------------------C-c-------
Q 009188 224 LQILQ-GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN-----------------------------G-G------- 265 (540)
Q Consensus 224 ~~~l~-~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~-----------------------------~-~------- 265 (540)
.+.+. +|.+.|+++.||+||+|||+||.||.|+||.+... . .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 45566 99999999999999999999999999999987640 0 0
Q ss_pred --------------------eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEE
Q 009188 266 --------------------VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCG 325 (540)
Q Consensus 266 --------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 325 (540)
.++...+.||.+.|.++.||. .++|++++.|.+|++|++...+|++.| .|..-|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEE
Confidence 123345679999999999995 569999999999999999999999999 7888999999
Q ss_pred Eec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe-------
Q 009188 326 WHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI------- 397 (540)
Q Consensus 326 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~------- 397 (540)
|+| |.++|++|+-||.|+||++...++..+...+ .-|++++|.|||+..++|+-+|.+++|+.........
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999 8899999999999999999999998888877 4899999999999999999999999999988652111
Q ss_pred ---ecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEE
Q 009188 398 ---EEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW 473 (540)
Q Consensus 398 ---~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iw 473 (540)
.....|+.+.|.|.. ..+++.+.|..|+|||.+.. .++.+|++.......+.+.+ +.+|++|+++++|..|++|
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEEE
Confidence 113379999999844 56888999999999999776 88899999888777787777 5699999999999999999
Q ss_pred ECCC
Q 009188 474 HRAS 477 (540)
Q Consensus 474 d~~~ 477 (540)
+...
T Consensus 574 ~~~~ 577 (712)
T KOG0283|consen 574 KNDS 577 (712)
T ss_pred eCCC
Confidence 9743
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-31 Score=230.11 Aligned_cols=291 Identities=17% Similarity=0.305 Sum_probs=244.4
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC--CCcE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV--EEAV 300 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i 300 (540)
+.+.+..-.+.|+++.|+++|.++++++.|.+++|||...+ ...+++..+.-.|..++|......++.++. |.+|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 33455556789999999999999999999999999999876 566777778888999999887777777776 8899
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
+..++.+.+.++.|.+|...|.+++.+|-++.+++++.|++|++||++...+....... .-...+|+|.|-.++++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecC
Confidence 99999999999999999999999999998899999999999999999976665555443 3346789999999999999
Q ss_pred CCeEEEEECCCce----EEEe---ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCe-eEEEee
Q 009188 381 ESALLLLDREAKV----ERYI---EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSR-FVIRSC 452 (540)
Q Consensus 381 d~~i~~~d~~~~~----~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~ 452 (540)
...|++||++.-. ..+. ......+.+.|+|+|++++.++..+.+++.|.-.+ .....+.++.... ..+.++
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeEE
Confidence 8899999988742 2222 34678899999999999999999999999998877 5777777766544 334444
Q ss_pred eccCCCcEEEEeeCCCcEEEEECCCCceeEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCc
Q 009188 453 FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 453 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
+ .|+++++++|+.||+|.+|++++|..+..+.+ +.+++.++.|+|.-. +++|+ +..+-+|=....+.
T Consensus 240 f-tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~-mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 240 F-TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA-MFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred E-CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee-eeeec--CceEEEEecccccc
Confidence 4 99999999999999999999999999999998 789999999999664 55555 55788997765443
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=255.29 Aligned_cols=242 Identities=17% Similarity=0.353 Sum_probs=221.1
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC 354 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 354 (540)
-..+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|+++|.++.|++++.++++|+.+|.|++|+.+...+..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 34579999999999999999999999999986555555667899999999999999999999999999999998888877
Q ss_pred eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 355 WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
...++...|++++|+|+...+++++.||+|++||..... ....+|.-.|.+++|+|....+++++.|+.|++||.+++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 888887899999999999999999999999999988765 566789999999999999999999999999999999998
Q ss_pred ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCc
Q 009188 433 VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRT 512 (540)
Q Consensus 433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~ 512 (540)
.++.++.+|+..+..+.+ ++++++|+++|.|..++++|+++.+.+..+++|...|+++.|+|-.+.+|.+||.||.
T Consensus 255 -~cl~tlh~HKntVl~~~f---~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 255 -SCLATLHGHKNTVLAVKF---NPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred -chhhhhhhccceEEEEEE---cCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 888888899887555443 8899999999999999999999999999999999999999999998889999999999
Q ss_pred EEEecCCC
Q 009188 513 IRIWGLKD 520 (540)
Q Consensus 513 i~iw~~~~ 520 (540)
|..|.+..
T Consensus 331 vvh~~v~~ 338 (464)
T KOG0284|consen 331 VVHWVVGL 338 (464)
T ss_pred eEEEeccc
Confidence 99999883
No 50
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-33 Score=262.98 Aligned_cols=291 Identities=16% Similarity=0.246 Sum_probs=251.4
Q ss_pred cceEEecccCcCcEEEEEEe-cCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 221 SRTLQILQGHTDEVWFLQFS-HNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~s-p~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
.+..+.+-|..+.|..++|- |+.++||.++..+.+++|+..+. . ...+.+|...|.++....+|.+|+||+.|.+
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~-c~ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS---Y-CQIIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC---c-eEEEeCchhheeeeeecccCcEEEEecCCce
Confidence 45677788999999999985 57789999999999999987643 2 2378899999999996667889999999999
Q ss_pred EEEEECCCC----eEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCce----EE-----EeeccccceEEE
Q 009188 300 VRRWDVSSG----NCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKE----LE-----CWKGQRTLKISD 365 (540)
Q Consensus 300 i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----~~-----~~~~~~~~~v~~ 365 (540)
+++|.++++ .++....+|...|.+++++..+ .+|++++.|+++++|++...+ .. .....|...|++
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 999988544 3455667899999999997744 588999999999999996511 11 123456678999
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc
Q 009188 366 LEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 366 i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
++++|+.+.+++|+.|.+.++|++.... ..+.+|...+.++.|+|..+.+++++.|++|+||.+.+. .+.+++.||.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~ 547 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHT 547 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCcc
Confidence 9999999999999999999999999655 667789999999999999999999999999999999988 8999999999
Q ss_pred CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 444 RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 444 ~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
..+ +++.| -.+|..|++++.||-|++|+++++.++.++.+|.+.|++++.+|... +++|||.||.|.+|.=.+
T Consensus 548 ~aV--lra~F-~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 548 SAV--LRASF-IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cee--Eeeee-eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc-eeEecCCCeEEEEeecCc
Confidence 874 44444 56889999999999999999999999999999999999999999986 999999999999997544
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-33 Score=266.58 Aligned_cols=286 Identities=14% Similarity=0.271 Sum_probs=253.0
Q ss_pred ecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 226 ~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
.++..+..|..++|+|...+++++-..|.|++||+..+ .++..+..|.++|..++|+|.+.++++||.|..|+||+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 45566788999999999999999999999999999876 677889999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEE
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALL 385 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~ 385 (540)
.+.+|+.++.+|-..|..+.|++.-.+|++++.|.+|+||+..++.+.....+|...|.|..|+|....+++++-|.+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCce-------------------------------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC-c
Q 009188 386 LLDREAKV-------------------------------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE-V 433 (540)
Q Consensus 386 ~~d~~~~~-------------------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~ 433 (540)
+||+..-. ....+|...|+-++|+|.-..+++|+.|..|++|.+... .
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99975421 112357788999999999999999999999999998653 2
Q ss_pred eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcE
Q 009188 434 KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i 513 (540)
-.+.+..+|.+.+.+ +.+.|...++++.|+|++|+|||+...+.+.+++...+..+.++-+|..+ ++ .++.|+-+
T Consensus 241 WEvDtcrgH~nnVss---vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lN-Lf-AAgHDsGm 315 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSS---VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN-LF-AAGHDSGM 315 (1202)
T ss_pred eeehhhhcccCCcce---EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcc-ee-eeecCCce
Confidence 345566788887544 44488999999999999999999999999999987778999999999885 44 55566667
Q ss_pred EEecCC
Q 009188 514 RIWGLK 519 (540)
Q Consensus 514 ~iw~~~ 519 (540)
.+|.+.
T Consensus 316 ~VFkle 321 (1202)
T KOG0292|consen 316 IVFKLE 321 (1202)
T ss_pred EEEEEc
Confidence 777765
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-32 Score=223.87 Aligned_cols=257 Identities=18% Similarity=0.292 Sum_probs=225.3
Q ss_pred EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEec
Q 009188 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
....+..|.++|..+.|+-+|+|.++++.|.+|++|+...|.+++++.+|+..|..++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEecCCe
Q 009188 348 GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNLLNQE 423 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 423 (540)
++++..+....|...|+.+.|+.+...+++|+-|.++++||.+... +.+......|.++.+ .+..+++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCc
Confidence 9999999999999999999999999999999999999999998865 333345677888777 4678999999999
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEE--EeCCCCC
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCV--SWNPANP 501 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~~~~~~ 501 (540)
++.||++.+ .....+.++. +.+..++++++....++.|+++++.|-.+|+++..++||.+.=..+ +++....
T Consensus 167 vRtydiR~G-~l~sDy~g~p-----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 167 VRTYDIRKG-TLSSDYFGHP-----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred EEEEEeecc-eeehhhcCCc-----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 999999987 5554454543 3344459999999999999999999999999999999998765444 4555554
Q ss_pred CEEEEEeCCCcEEEecCCCCCccccccCCCce
Q 009188 502 HMLASASDDRTIRIWGLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 502 ~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v 533 (540)
.+++|+.||.|++||+-+..++.+..++..+
T Consensus 241 -hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 241 -HVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred -eEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 8999999999999999999888877777665
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-32 Score=256.92 Aligned_cols=285 Identities=18% Similarity=0.303 Sum_probs=250.8
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD 304 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 304 (540)
-.+.||...|.++++|.+...+++|+. +.++||+.++. ++++++.. +.+.+..|.|.++++++|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~---kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL---KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc---ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEE
Confidence 467899999999999998887777765 68999998765 56666654 3789999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-----ceE-E--Ee----eccccceEEEEEEccCC
Q 009188 305 VSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-----KEL-E--CW----KGQRTLKISDLEVTSDG 372 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~-~--~~----~~~~~~~v~~i~~~~~~ 372 (540)
+.+...+.+.+.|.+.|++++.+||+..+++|+.|.+|++||..- +.. . .. .-.-...|.|+.++|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999831 111 1 11 11123479999999999
Q ss_pred CEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEE
Q 009188 373 KQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 373 ~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 450 (540)
++++++--|.++++|-+.+-. ....+|.-||.|+.++||++.+++|+.|..|++|-+.-+ .+-+.+-+|...+..+.
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCceeEEE
Confidence 999999999999999998876 778899999999999999999999999999999999876 77788888988866655
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
+ -|...++.+++.|+.|+-||-...+.+..+.+|...|++++.+|+|. +++|+|.|.+|++|.-..
T Consensus 600 F---~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 600 F---LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred E---cccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccC
Confidence 5 46788899999999999999999999999999999999999999996 999999999999998765
No 54
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=244.59 Aligned_cols=299 Identities=18% Similarity=0.295 Sum_probs=238.9
Q ss_pred cCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCc-eEEEEEe-cCCCCCeEEEEECcCCCeEEE
Q 009188 216 RDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG-VTLKHKL-SGHQKPVSCVSWSSDDQQLLT 293 (540)
Q Consensus 216 ~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~-~~h~~~v~~l~~s~~~~~l~s 293 (540)
...+|...-..+++|+..|.++++.|.|-.|++||.|.+|++||+..-.. ....+.+ ......|.++.|++.|..|++
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence 34578888889999999999999999999999999999999999863211 1111122 233456999999999999999
Q ss_pred eeCCCcEEEEECCCCeEEEE-------------eecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCce-EEE-e--
Q 009188 294 CGVEEAVRRWDVSSGNCLHV-------------YEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKE-LEC-W-- 355 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~~~-------------~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-~~~-~-- 355 (540)
.+.....+|+|- .|..+.. -++|...++|.+|+|+ ...|++++.||++++||++... ... +
T Consensus 232 vsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 232 VSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 998999999995 4433322 2478889999999995 4588999999999999996422 111 1
Q ss_pred --eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-----EEEeecCC--ceeEEEEcCCCCEEEEEecCCeEEE
Q 009188 356 --KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-----ERYIEEDQ--TITSFSLSRDNKFLLVNLLNQEIHL 426 (540)
Q Consensus 356 --~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i 426 (540)
......+++..+|++||+.+++|+.||.|.+|+..... .....|.. .|+|+.||++|++|++-+.|+++++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 12233468999999999999999999999999976533 22334555 8999999999999999999999999
Q ss_pred EEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC------CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCC
Q 009188 427 WNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE------DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPAN 500 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 500 (540)
||++...+++....+-........+|| +|+.++|++|+. .|.+++||..+...+..+.-....|..+.|+|.-
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL 469 (641)
T ss_pred eeccccccchhhhcCCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence 999988788887776665544455666 999999999864 5789999999999999988788899999999988
Q ss_pred CCEEEEEeCCCcEEEec
Q 009188 501 PHMLASASDDRTIRIWG 517 (540)
Q Consensus 501 ~~~l~s~~~Dg~i~iw~ 517 (540)
+ .|+.|+.||+++||=
T Consensus 470 N-Qi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 470 N-QIFAGSGDGTAHVYY 485 (641)
T ss_pred h-heeeecCCCceEEEE
Confidence 6 677788889998863
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-31 Score=226.62 Aligned_cols=264 Identities=17% Similarity=0.269 Sum_probs=226.4
Q ss_pred EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 009188 267 TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 345 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 345 (540)
.+...+.+|.+.|+.+.|+|+|..|++|+.|..|.+|++.. -+....+++|.+.|..+.|.+|++.+++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 34456789999999999999999999999999999999643 45567888999999999999999999999999999999
Q ss_pred ecCCceEEEeeccccceEEEEEEccCCCE-EEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCe
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSDGKQ-IITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQE 423 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 423 (540)
|.++++.......|...++.+..+.-|.. +.+++.|+++++||.+.+. ........+++++.|..++..+.+|+-|+.
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 99999998888888888998886666654 5578899999999999877 666677889999999999999999999999
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC----CceeEeecCCCC----CeEEEE
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS----CDLIGALPGHSG----AVNCVS 495 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~----~v~~l~ 495 (540)
|++||++.+ .....+.+|...++.+ +.+++|.++.+-+.|.++++||++. .+++..+.+|.. .....+
T Consensus 198 ikvWd~r~~-d~~~~lsGh~DtIt~l---sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 198 IKVWDLRKN-DGLYTLSGHADTITGL---SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred eeeeccccC-cceEEeecccCceeeE---EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999887 7888999999985554 4489999999999999999999875 344777777542 345678
Q ss_pred eCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCceEe
Q 009188 496 WNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVHY 535 (540)
Q Consensus 496 ~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v~~ 535 (540)
|+|++. .+.+|+.|..+++||..+..+..+...+.|...
T Consensus 274 wsp~~~-~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 274 WSPNGT-KITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred ccCCCC-ccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 999996 899999999999999999888777665555533
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.5e-31 Score=220.41 Aligned_cols=269 Identities=20% Similarity=0.368 Sum_probs=218.9
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEec-ccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQIL-QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG 274 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (540)
.+++++.|+.+++|..... + .-.+...+ .+|+..|.+++|+|.|++||+||.|.++.||.-. ++.++...++.+
T Consensus 29 ilAscg~Dk~vriw~~~~~--~--s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~~lEG 103 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSG--D--SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVATLEG 103 (312)
T ss_pred EEEeecCCceEEEEecCCC--C--cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEeeeec
Confidence 4678888999999876531 1 12333333 4899999999999999999999999999999754 567889999999
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC---eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC---
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG---NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG--- 348 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--- 348 (540)
|...|.|++|+++|++||+++.|++|.||.+..+ ++...++.|...|..+.|+|....|++++.|.+|++|+-.
T Consensus 104 HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd 183 (312)
T KOG0645|consen 104 HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD 183 (312)
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC
Confidence 9999999999999999999999999999998754 6788999999999999999999999999999999999875
Q ss_pred CceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 349 GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 349 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
.-.+......+...|.+++|++.|..+++++.|+++++|-..+.. ...|...+..+.|. ...|++++.|+.|++|.
T Consensus 184 dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 184 DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--chhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 345666777777799999999999999999999999999865322 22356778889998 66899999999999998
Q ss_pred ecCCc-ee-----eeEeeCCcCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECC
Q 009188 429 IEGEV-KL-----VAKYKGHKRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 429 ~~~~~-~~-----~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~ 476 (540)
-.... .+ ...-..|... +.+..+.| ..+.|++|+.||.|++|.+.
T Consensus 260 ~s~~~d~p~~~l~~~~~~aHe~d---VNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ESDSPDEPSWNLLAKKEGAHEVD---VNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCCCchHHHHHhhhcccccc---cceEEEcCCCCCceeecCCCceEEEEEec
Confidence 65421 11 1122345544 44444466 47899999999999999864
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-30 Score=255.96 Aligned_cols=256 Identities=19% Similarity=0.377 Sum_probs=225.1
Q ss_pred EecCC-CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEec
Q 009188 271 KLSGH-QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN--CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 271 ~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
.+..| ...|.++.|+++|+.+++++.++.+++|+..+++ ..+.+.+|...|.+++|+|++.++++++.|++|++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34344 7889999999999999999999999999998877 77777899999999999999999999999999999999
Q ss_pred -CCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeE
Q 009188 348 -GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEI 424 (540)
Q Consensus 348 -~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 424 (540)
..+........|...|++++|+|+|+.+++|+.|++|++||+++.. ..+..|...|++++|+++++++++++.|+.|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence 5557777777888899999999999999999999999999999855 6677899999999999999999999999999
Q ss_pred EEEEecCCce-eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCC---eEEEEeCCCC
Q 009188 425 HLWNIEGEVK-LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGA---VNCVSWNPAN 500 (540)
Q Consensus 425 ~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~---v~~l~~~~~~ 500 (540)
++||+.++.. +...+.++.... .+..+.++|++.++++++.|+.+++||+..+.....+.+|... +.+...++.+
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9999998833 466777777765 6677777999999999999999999999999999999999875 3444556677
Q ss_pred CCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 501 PHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 501 ~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
. ++++|+.|+.|++|++.++.......
T Consensus 392 ~-~i~sg~~d~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 392 K-LIYSGSEDGSVYVWDSSSGGILQRLE 418 (456)
T ss_pred C-eEEEEeCCceEEEEeCCccchhhhhc
Confidence 5 99999999999999999877666533
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.2e-30 Score=253.25 Aligned_cols=286 Identities=19% Similarity=0.371 Sum_probs=249.9
Q ss_pred Eecc-cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 225 QILQ-GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 225 ~~l~-~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
..+. .|...+.+..|. +.++++++.|++|++|+...+ ......+.+|.+.|.++++...+.++++|+.|.++++|
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 3444 367788999998 568999999999999998754 33444499999999999998878999999999999999
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCe
Q 009188 304 DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
|..+|+|...+.+|...+.++... ...+++|+.|.+|++|++.++........|..+|.++.++ +..+++|+.|++
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence 999999999999999999988765 4578889999999999999988888888788999999998 889999999999
Q ss_pred EEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEE
Q 009188 384 LLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI 461 (540)
Q Consensus 384 i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 461 (540)
|.+||..+.. ....+|...|.++.+.+. ..+++|+.|+.|++||+++..+++..+.+|...+..+ ...+++|
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-----~~~~~~L 426 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-----LLRDNFL 426 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-----cccccee
Confidence 9999999876 666789999999988766 8999999999999999998656888888888765333 3467899
Q ss_pred EEeeCCCcEEEEECCCCceeEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc
Q 009188 462 ASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 462 ~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
++++.||+|++||..+++++..+.+ |.+.|..+++. . ..+++++.||++++||+++++..+..
T Consensus 427 vs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~-~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 427 VSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--K-EEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EeccccccEEEeecccCceeeeeccCCcccEEEeecC--c-ceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999999999999999998 77999999987 2 37999999999999999999888753
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=237.47 Aligned_cols=234 Identities=19% Similarity=0.417 Sum_probs=208.5
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC 354 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 354 (540)
....|+|+.+ |...+++|..|++|+|||..+-.+.+.+.+|.+.|.|+.|. .+.+++|+.|.+|++||.++++...
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 4567999998 46689999999999999999999999999999999999885 5699999999999999999999988
Q ss_pred eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 355 WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
...+|...|..+.|+ ..++++++.|.++.+||+.... ....+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 888898899999887 4689999999999999998765 3445788999999995 569999999999999999
Q ss_pred cCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 430 EGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
.+. ..++++.+|...+.+. ...++++++|+.|.+|++||+..|.++..+.||+.-|.++.|.. + .++||+.
T Consensus 348 st~-efvRtl~gHkRGIACl-----QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--k-rIVSGaY 418 (499)
T KOG0281|consen 348 STC-EFVRTLNGHKRGIACL-----QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--K-RIVSGAY 418 (499)
T ss_pred cce-eeehhhhcccccceeh-----hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--c-eeeeccc
Confidence 988 8999999999874433 45789999999999999999999999999999999999999964 3 7999999
Q ss_pred CCcEEEecCCCCCccc
Q 009188 510 DRTIRIWGLKDLNVKR 525 (540)
Q Consensus 510 Dg~i~iw~~~~~~~~~ 525 (540)
||+|+|||+..+.-.+
T Consensus 419 DGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPR 434 (499)
T ss_pred cceEEEEecccccCCc
Confidence 9999999999876553
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-30 Score=217.26 Aligned_cols=280 Identities=17% Similarity=0.283 Sum_probs=228.5
Q ss_pred EEEEEec--CCCeE-EEE-----eCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEEC
Q 009188 235 WFLQFSH--NGKYL-ASS-----SNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 235 ~~~~~sp--~g~~l-~tg-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~ 305 (540)
.++.||| .+++. |++ ...|++.|.+++..+.......+ .-.+.+..++|+++. +.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 4788998 33322 222 23688999998755555554444 346789999999864 67888899999999996
Q ss_pred CC-CeEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC-CCEEEEEecCC
Q 009188 306 SS-GNCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD-GKQIITMCKES 382 (540)
Q Consensus 306 ~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~ 382 (540)
.. ..++..++.|...|.++.|++ ++..+++++.|++|++|+...+........+...|....|+|. ++.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 467889999999999999999 6667888999999999999877777777778889999999985 57889999999
Q ss_pred eEEEEECCCce--EEEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccC-CC
Q 009188 383 ALLLLDREAKV--ERYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL-EQ 458 (540)
Q Consensus 383 ~i~~~d~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 458 (540)
++++||++..- ..+..|...|.++.|+. +.+.+++|+.|+.|+.||++.-..++..+.+|.-.+..+.+ +| ..
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~---Sph~~ 247 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF---SPHHA 247 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec---Ccchh
Confidence 99999987643 55667888999999998 56888999999999999999887888888888765444443 44 45
Q ss_pred cEEEEeeCCCcEEEEECCCC-ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 459 AFIASGSEDSQVYIWHRASC-DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.+|++++.|-+++|||...+ ..+.+...|+.-|..+.|++..+.++|++|.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 68999999999999998754 4556677799999999999988889999999999999985
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.7e-30 Score=249.64 Aligned_cols=292 Identities=14% Similarity=0.274 Sum_probs=237.2
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
..++..+..|.++|..++|+|++.++++||.|-.|++|++... +++.++.+|-+.|..+.|++.-.+++++|.|.+|
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rclftL~GHlDYVRt~~FHheyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTI 117 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---eehhhhccccceeEEeeccCCCceEEEccCCCeE
Confidence 4677889999999999999999999999999999999999765 7889999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce-----------------------------
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE----------------------------- 351 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------------------- 351 (540)
+||+..+++++..+.+|...|.|..|+|....+++++-|.+|++||+.+-.
T Consensus 118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred EEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 999999999999999999999999999999999999999999999996311
Q ss_pred EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009188 352 LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLW 427 (540)
Q Consensus 352 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 427 (540)
+.....+|...|+-++|+|.-..+++|+.|..|++|...... ....+|...|.++-|+|..+.+++.+.|+.|++|
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 122344677789999999999999999999999999988755 4556899999999999999999999999999999
Q ss_pred EecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc--------------------------EEEEECCCCc--
Q 009188 428 NIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ--------------------------VYIWHRASCD-- 479 (540)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~--------------------------i~iwd~~~~~-- 479 (540)
|+... ..+++|......-+.+.. .|..+++++|...|. |+.+|+.+.+
T Consensus 278 Dm~kR-t~v~tfrrendRFW~laa---hP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~ 353 (1202)
T KOG0292|consen 278 DMTKR-TSVQTFRRENDRFWILAA---HPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDT 353 (1202)
T ss_pred ecccc-cceeeeeccCCeEEEEEe---cCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccc
Confidence 99877 777788766666555544 677777777665442 2223332211
Q ss_pred eeEeecCC---CCCeEEEEeCCCCCCEEEEEeCC-CcEEEecCC
Q 009188 480 LIGALPGH---SGAVNCVSWNPANPHMLASASDD-RTIRIWGLK 519 (540)
Q Consensus 480 ~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~D-g~i~iw~~~ 519 (540)
.+..++.. ..++.+++++|...-.+++...| |.--++.+.
T Consensus 354 ~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 354 AVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred eeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 12223322 25788999999876455554444 444444443
No 62
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.3e-29 Score=216.51 Aligned_cols=281 Identities=17% Similarity=0.295 Sum_probs=224.7
Q ss_pred EecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 225 QILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
.+-....+.|.+++||| ...++++||.||+|++|++...+.... +....|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 33344678999999999 555677899999999999986533333 5567899999999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEecCCC--EEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 304 DVSSGNCLHVYEKAGLGLVSCGWHPDRK--WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
|+.+++ +..+..|..+|.++.|-+... .|++|+.|++|++||.+............ ++.++. --...++++..+
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~D--v~~pm~vVata~ 175 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAAD--VLYPMAVVATAE 175 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehh--ccCceeEEEecC
Confidence 999995 566779999999999998665 89999999999999998765544443322 444443 345678899999
Q ss_pred CeEEEEECCCceEEEee----cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC-ceeeeEeeCCcC------CeeEEE
Q 009188 382 SALLLLDREAKVERYIE----EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE-VKLVAKYKGHKR------SRFVIR 450 (540)
Q Consensus 382 ~~i~~~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~------~~~~i~ 450 (540)
..|.+|++++....+.. .+-.+++++..++....+.|+.+|.+.+..+... ...-..|+.|.. .++.+.
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 99999999886633332 3456889999999988899999999999988763 233345555552 377777
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCC
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 510 (540)
...+.|....|++.+.||++.+||-.....+.+.+.|..+|++.+|+.+|..+..+.|.|
T Consensus 256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 777788889999999999999999998888889889999999999999997434444544
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=3.1e-30 Score=256.04 Aligned_cols=292 Identities=18% Similarity=0.249 Sum_probs=240.1
Q ss_pred CcCcEEEEEEecCCCeEEEEe--CCCcEEEEEeecCC---------ceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 230 HTDEVWFLQFSHNGKYLASSS--NDRSAIIWEVDLNG---------GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~--~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
+...|.++..+|+|..+|||+ .||.++||+.+.-. -.+.+.+...|.+.|+|+.|+|||++||+||.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 89999999875211 1244566788999999999999999999999999
Q ss_pred cEEEEECCC------------------CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecccc
Q 009188 299 AVRRWDVSS------------------GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRT 360 (540)
Q Consensus 299 ~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (540)
.|.||.... .+++..+.+|...|..++|+|++.+|++++.|++|.+||..+.........|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 13677888999999999999999999999999999999999998888889999
Q ss_pred ceEEEEEEccCCCEEEEEecCCeEEEEECCCc-eEEEe-------ecCCceeEEEEcCCCCEEEEEec----CCeEEEEE
Q 009188 361 LKISDLEVTSDGKQIITMCKESALLLLDREAK-VERYI-------EEDQTITSFSLSRDNKFLLVNLL----NQEIHLWN 428 (540)
Q Consensus 361 ~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d 428 (540)
+.|..+.|+|-|+++++-+.|++|++|+...- ....+ ........+.|||||.+|++... ..++.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 99999999999999999999999999996652 22221 12345788999999999998643 33677887
Q ss_pred ecCCceeeeEeeCCcCCeeEEEeeec---cCC-------C----cEEEEeeCCCcEEEEECCCCceeEeecC-CCCCeEE
Q 009188 429 IEGEVKLVAKYKGHKRSRFVIRSCFG---GLE-------Q----AFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNC 493 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-------~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~ 493 (540)
-.+. +.-..+-+|..+..++++..- .+. . ..+|+|+.|++|.||.....+++..... ....|.+
T Consensus 252 R~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 252 RGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred cCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 6544 667788899988777665320 011 1 1689999999999999988888765442 3578999
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEecCCCCCc
Q 009188 494 VSWNPANPHMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 494 l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
++|+||| ..|+.+|.||+|.+..+...++
T Consensus 331 msWspdG-~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 331 MSWSPDG-FSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred eeEcCCC-CeEEEEecCCeEEEEEcchHHh
Confidence 9999999 4899999999999999987554
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3e-29 Score=235.83 Aligned_cols=252 Identities=25% Similarity=0.428 Sum_probs=217.8
Q ss_pred EEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC
Q 009188 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 270 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 349 (540)
.++.+|.++|.+++|+|+++++++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.+|.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 34668999999999999999999999999999999999988888889999999999999999999999999999999987
Q ss_pred ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009188 350 KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLW 427 (540)
Q Consensus 350 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 427 (540)
.........+...+.++.|++++..+++++.++.+.+||..+.. .....+...+.+++|+|++.++++++.++.+++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 65555555666689999999998888888889999999998654 3334577889999999999999988889999999
Q ss_pred EecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 428 NIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
|++.. .....+..+...... +.++++++.+++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+++++
T Consensus 163 d~~~~-~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 237 (289)
T cd00200 163 DLRTG-KCVATLTGHTGEVNS---VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLLASG 237 (289)
T ss_pred Ecccc-ccceeEecCccccce---EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC-cEEEEE
Confidence 99866 566677766655433 3347888899999999999999999999999998899999999999986 488888
Q ss_pred eCCCcEEEecCCCCCcccc
Q 009188 508 SDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 508 ~~Dg~i~iw~~~~~~~~~~ 526 (540)
+.||.|++|++.+++....
T Consensus 238 ~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred cCCCcEEEEEcCCceeEEE
Confidence 8899999999998776554
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.3e-31 Score=241.04 Aligned_cols=260 Identities=17% Similarity=0.260 Sum_probs=219.8
Q ss_pred EEEEEecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCC-CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 009188 267 TLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSS-GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICM 344 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 344 (540)
+...++.+|...|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+++|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45678899999999999999 889999999999999999987 8999999999999999999999999999999999999
Q ss_pred EecCCceEEEeeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecC
Q 009188 345 WELGGKELECWKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 345 wd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
||++++++....... ..+.++.|.|++ +.+++|+.|+.|+.||++++. ..+-.|-+.|..+.|-++|+.+++.+.|
T Consensus 285 wDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 999998877655444 378999999999 889999999999999999987 5556788999999999999999999999
Q ss_pred CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc---eeEeecCCC--CCeEEEEe
Q 009188 422 QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD---LIGALPGHS--GAVNCVSW 496 (540)
Q Consensus 422 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h~--~~v~~l~~ 496 (540)
+.+++|+.+.............. .+.++...|++.++++-+.|+.|.++.+...- ....+.||. +.-..+.|
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~h---smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMH---TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhc---cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 99999999876322222222222 23455558999999999999999999865432 335677775 45677899
Q ss_pred CCCCCCEEEEEeCCCcEEEecCCCCCccccccCCC
Q 009188 497 NPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSN 531 (540)
Q Consensus 497 ~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~ 531 (540)
||||. +|++|+.||.+.+||.++-++..+...++
T Consensus 441 SpDG~-~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 441 SPDGR-TLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred cCCCC-eEEeecCCccEEEeechhhhhhhccccCC
Confidence 99996 99999999999999999988877644443
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.2e-31 Score=231.62 Aligned_cols=286 Identities=16% Similarity=0.209 Sum_probs=233.0
Q ss_pred eEEecccCcCcEEEEEEecCC-CeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 223 TLQILQGHTDEVWFLQFSHNG-KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
.+..|.||.++|.|++=+|.. ..+|+|+.||.|+|||+... .+..++..|.+.|..|++.. ..+++++.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 456678999999999999977 78999999999999999754 67788999999999999986 6889999999999
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEE-EEec
Q 009188 302 RWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQII-TMCK 380 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~ 380 (540)
.|.++- ...+++.+ .+.+..+.-+..+..+++++. .|.|||................+.++.|+|....++ ++..
T Consensus 133 ~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 999754 46666643 346677777777778888876 599999976555555555556899999999876554 5559
Q ss_pred CCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc
Q 009188 381 ESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 381 d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 459 (540)
|+.|.+||.+... .........-+.++|+|.+-.++++..|..++.||++....++..+.+|...+..+ .++|.|+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV---dfsptG~ 285 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV---DFSPTGQ 285 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEe---ccCCCcc
Confidence 9999999999876 45555566778899999888899999999999999998777888888887764443 4499999
Q ss_pred EEEEeeCCCcEEEEECCCCceeEeec-CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 460 FIASGSEDSQVYIWHRASCDLIGALP-GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
-+++||.|.+|+||..+.+..-..+. .-...|.++.|+.|.. +++|||+|+.|++|.-+-.
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc-EEEecCCCcceeeeecchh
Confidence 99999999999999988765443331 1235799999999985 9999999999999987643
No 67
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=228.10 Aligned_cols=293 Identities=18% Similarity=0.256 Sum_probs=241.6
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEE--------------EEe-cCCCCCeEEEEECcCC
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLK--------------HKL-SGHQKPVSCVSWSSDD 288 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~~s~~~ 288 (540)
...+..|.-+|.|++++|++++.++++.+|+|.-|++.++...... ..- .+|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5677889999999999999999999999999999998765422100 011 3788999999999999
Q ss_pred CeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEE
Q 009188 289 QQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEV 368 (540)
Q Consensus 289 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 368 (540)
++|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|++|++|+++..........|...|..+..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999998889999999999999999887777777777789999999
Q ss_pred ccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee-CCcC-C
Q 009188 369 TSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK-GHKR-S 445 (540)
Q Consensus 369 ~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~-~ 445 (540)
..-++.+.+|+.|.++++|++.... ..+..+.+.+-|++|-. ...+++|+.+|.|.+|++... +++.+.. .|.- +
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKK-KPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeeccc-CceeEeeccccccC
Confidence 9889999999999999999996655 56667788999999975 457899999999999999876 4444433 2211 1
Q ss_pred e-------eEEEeeeccCCCcEEEEeeCCCcEEEEECCCC----ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEE
Q 009188 446 R-------FVIRSCFGGLEQAFIASGSEDSQVYIWHRASC----DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIR 514 (540)
Q Consensus 446 ~-------~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~ 514 (540)
. +-+.....-+...++++|+.+|.|++|-+..+ +++..++ -.+.|++++|+++|..+++..|....+-
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 1 12344444678899999999999999998877 4556666 6789999999999986777778777665
Q ss_pred EecCC
Q 009188 515 IWGLK 519 (540)
Q Consensus 515 iw~~~ 519 (540)
=|-..
T Consensus 452 RW~~~ 456 (479)
T KOG0299|consen 452 RWWCL 456 (479)
T ss_pred eeeEe
Confidence 55543
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=228.59 Aligned_cols=283 Identities=15% Similarity=0.218 Sum_probs=239.8
Q ss_pred CcCcEEEEEEecCCCe-EEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC
Q 009188 230 HTDEVWFLQFSHNGKY-LASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG 308 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~-l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 308 (540)
..+.|.+++|+|...+ +|+.+. -.+.||+..+. ...+++......|.+++|..||+++++|+..|.|+|+|..+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 3468999999996553 444443 46999987654 344556677889999999999999999999999999997776
Q ss_pred eEEEEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCC-EEEEEecCCeEEE
Q 009188 309 NCLHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGK-QIITMCKESALLL 386 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~i~~ 386 (540)
..++.+..|..++..+.|+|+ +..|++|+.|+.+++||+.+.........|...|++.+++|-.. .+++|+.||.|++
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 778889999999999999994 55677888889999999999887667788889999999999765 7889999999999
Q ss_pred EECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe
Q 009188 387 LDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG 464 (540)
Q Consensus 387 ~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 464 (540)
||.+... .....|..+|.++.+-|.|..+++++ .+.+++||+.++.+.+..+..|...+++++. ..++..|++|
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l---~s~~~rLlS~ 256 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRL---ASDSTRLLSG 256 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEe---ecCCceEeec
Confidence 9998863 67778999999999999999999988 5679999999776777777778887766655 4577999999
Q ss_pred eCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 465 SEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 465 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
+-|+.|++||+.+.+.++.+. ..++|.+++.+|++. .++.|..||.+-+=+...++
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~-t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQ-TVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred ccccceEEEEccceEEEEeee-cccceeeEEecCCCc-eEEEecccceeeeehhhccc
Confidence 999999999999999998887 679999999999885 89999999998887554433
No 69
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=216.97 Aligned_cols=309 Identities=17% Similarity=0.349 Sum_probs=255.6
Q ss_pred CCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeE
Q 009188 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS 280 (540)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 280 (540)
+....++.|.+.. .....++.+.||.++|+.++.......+.+++.|.+.+||.++++ .++.++.+|.+.|+
T Consensus 123 ~tsrivssFk~~t-----~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVN 194 (481)
T KOG0300|consen 123 PTSRIVSSFKDGT-----VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVN 194 (481)
T ss_pred CcchheeeecCCc-----eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeeccccccee
Confidence 3334555555442 235677889999999999999888889999999999999999987 78889999999999
Q ss_pred EEEECcCCCeEEEeeCCCcEEEEEC------CC------------------------------C----eEEEEeecCCCc
Q 009188 281 CVSWSSDDQQLLTCGVEEAVRRWDV------SS------------------------------G----NCLHVYEKAGLG 320 (540)
Q Consensus 281 ~l~~s~~~~~l~s~~~dg~i~iwd~------~~------------------------------~----~~~~~~~~~~~~ 320 (540)
++.|++.+.++++++.|++..||.. .. + .++..+.+|...
T Consensus 195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v 274 (481)
T KOG0300|consen 195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV 274 (481)
T ss_pred eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence 9999999999999999999999961 11 0 134567789999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEe
Q 009188 321 LVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYI 397 (540)
Q Consensus 321 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~ 397 (540)
|.++.|...|+.+++++.|.+-.+||++++++.....+|....+.++-+|..+.+++.+.|.+.++||++... ..+.
T Consensus 275 V~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 275 VSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred eEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999654 5667
Q ss_pred ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 398 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 398 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
+|...|+++.|..+. .+++|+.|.+|++||+++...++.++...... ..+.. +..+.+|+.-..+..|++||++.
T Consensus 355 GHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~-NRvav---s~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPA-NRVAV---SKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred ccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCcc-ceeEe---ecCCceEEeccCCceEEEEecCC
Confidence 899999999998765 57899999999999999876777776654432 22333 45667888888999999999875
Q ss_pred CceeE----eecCCCCCeEEEEeCCCCC-CEEEEEeCCCcEEEecCCCCC
Q 009188 478 CDLIG----ALPGHSGAVNCVSWNPANP-HMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 478 ~~~~~----~~~~h~~~v~~l~~~~~~~-~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
.++-. .-.+|..-|.+++|..+.+ .-|++||.|..+.-|++....
T Consensus 430 ~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 430 NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 44322 3347999999999975432 247899999999999988654
No 70
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2e-28 Score=240.55 Aligned_cols=287 Identities=14% Similarity=0.151 Sum_probs=214.8
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCce----------EEEEEecCCCCCeEEEEECc-CCCeEEEeeCCC
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGV----------TLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEE 298 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg 298 (540)
|-..|.....++++..+++++.+..+..|+...+... .....+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666677777777777777777777765422110 00123678999999999999 889999999999
Q ss_pred cEEEEECCCC-------eEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc
Q 009188 299 AVRRWDVSSG-------NCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 299 ~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 370 (540)
+|++||+.++ +.+..+.+|...|.+++|+|++ +.|++|+.|+.|++||++++........|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567788999999999999975 6899999999999999988877766677777899999999
Q ss_pred CCCEEEEEecCCeEEEEECCCce--EEEeecCCc-eeEEEEcCCCCEEEEEe----cCCeEEEEEecCCceeeeEeeCCc
Q 009188 371 DGKQIITMCKESALLLLDREAKV--ERYIEEDQT-ITSFSLSRDNKFLLVNL----LNQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~-i~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
+|..+++++.|+.|++||.++.. .....|... ...+.|.+++..+++++ .|+.|++||++....+......+.
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 99999999999999999998866 333345443 45678899888777654 478999999987645554444333
Q ss_pred CCeeEEEeeeccCCCcEEEEee-CCCcEEEEECCCCceeEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 444 RSRFVIRSCFGGLEQAFIASGS-EDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 444 ~~~~~i~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
.. .+...+++++++++++|+ .||.|++||+.+++++..... +..++.+++|.|.-. +-...--..|+|.+...
T Consensus 259 ~~--~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~---~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 259 SS--ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS---LDTRKCEIARFYALTYH 333 (493)
T ss_pred CC--ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc---ccccceeeeEEEEecCC
Confidence 22 233445588999998887 599999999999988766543 456788999988532 11112223466666543
No 71
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.2e-28 Score=260.01 Aligned_cols=265 Identities=12% Similarity=0.188 Sum_probs=214.4
Q ss_pred CCcEEEEEeecCCceEE--EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC----e----EEEEeecCCCcE
Q 009188 252 DRSAIIWEVDLNGGVTL--KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG----N----CLHVYEKAGLGL 321 (540)
Q Consensus 252 dg~i~iwd~~~~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v 321 (540)
+|.+++|+...-..... ...+..|.+.|.+++|+|+|+++++|+.|+.|+||++.+. . ....+ .+...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 57788887653211111 0123458999999999999999999999999999997542 1 12233 234678
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc-CCCEEEEEecCCeEEEEECCCce-EEEee
Q 009188 322 VSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS-DGKQIITMCKESALLLLDREAKV-ERYIE 398 (540)
Q Consensus 322 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~~d~~~~~-~~~~~ 398 (540)
.+++|++ ++.+|++++.||.|++||+.++........|...|.+++|+| ++..|++++.|+.|++||+.+.. .....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999987 578999999999999999988877777777888999999996 78999999999999999998765 33344
Q ss_pred cCCceeEEEEc-CCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 399 EDQTITSFSLS-RDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 399 ~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
....+.++.|+ +++.++++|+.||.|++||++........+.+|...+..+.+ . ++.++++++.|++|++||+..
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f---~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF---V-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE---e-CCCEEEEEECCCEEEEEeCCC
Confidence 55688999995 578999999999999999998764456777888877665544 3 578899999999999999874
Q ss_pred ------CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 478 ------CDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 478 ------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
+.++..+.+|...++.++|+|++. +|++|+.||.|++|+.....
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCC
Confidence 357888999999999999999986 99999999999999986553
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.5e-29 Score=220.22 Aligned_cols=267 Identities=18% Similarity=0.293 Sum_probs=224.2
Q ss_pred hcccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCC---eEEEEeCCCcEEEEEeecCCc-eEEEE
Q 009188 195 ACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGK---YLASSSNDRSAIIWEVDLNGG-VTLKH 270 (540)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~---~l~tg~~dg~i~iwd~~~~~~-~~~~~ 270 (540)
.-+++++.|+...+|+.. ++....+.||.++|.+++|.-... .|++++.|.++++|.++.+.. .....
T Consensus 116 ~~IltgsYDg~~riWd~~--------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~ 187 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDLK--------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK 187 (423)
T ss_pred ceEEEeecCCeeEEEecC--------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence 456788888888888765 788999999999999988865433 599999999999999885532 12233
Q ss_pred EecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-------------------------CeEEEEeecCCCcEEEEE
Q 009188 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-------------------------GNCLHVYEKAGLGLVSCG 325 (540)
Q Consensus 271 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~ 325 (540)
...||...|-+++..++|..+++|+.|.+|+||+..+ +.++-.+.+|..+|.++.
T Consensus 188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 3459999999999999999999999999999999321 234556789999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-----EEEeecC
Q 009188 326 WHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-----ERYIEED 400 (540)
Q Consensus 326 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~ 400 (540)
|++ ...+++++.|.+|+.||+.++.......... .+.++.++|..+.+++|+.|..+++||.+++. ..+.+|.
T Consensus 268 w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 268 WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred EcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 998 6689999999999999998776665544443 79999999999999999999999999999864 6778899
Q ss_pred CceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC
Q 009188 401 QTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 401 ~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
..|.++.|+|.. ..|++++.|+++++||+++...++..+.+|...+..+.+ .++.++++|+.|.+|+|+..
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW----~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW----NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec----cCCceEEeccCcceEEEecc
Confidence 999999999966 567789999999999999986799999999888666554 35678999999999999864
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-28 Score=231.97 Aligned_cols=273 Identities=19% Similarity=0.316 Sum_probs=224.6
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee
Q 009188 236 FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE 315 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 315 (540)
-+.|+ ..+.||.|.. ..|++|+...+. .......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~---v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGS---VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCc---eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 46677 4556777764 479999987653 222233348899999999999999999999999999999999999998
Q ss_pred c-CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE-eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce
Q 009188 316 K-AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC-WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV 393 (540)
Q Consensus 316 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~ 393 (540)
. |...|.+++|. +..+.+|+.|+.|..+|++...... ....|...|..+.|++|+.++++|+.|+.+.+||.....
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 8 99999999998 6689999999999999997644333 367788899999999999999999999999999996644
Q ss_pred --EEEeecCCceeEEEEcC-CCCEEEEEe--cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE--eeC
Q 009188 394 --ERYIEEDQTITSFSLSR-DNKFLLVNL--LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS--GSE 466 (540)
Q Consensus 394 --~~~~~~~~~i~~~~~s~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~s~ 466 (540)
..+..|...|..++|+| ....||+|+ .|+.|++||..++ ..+....... .|....|++..+-+++ |..
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdtgs----QVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDTGS----QVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccccCC----ceeeEEEcCCCCEEEEecCCC
Confidence 77889999999999999 557777754 5999999999877 4444333222 2444445776654444 456
Q ss_pred CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 467 DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 467 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
++.|.||+..+.+++..+.+|...|..++++|+|. .+++|+.|.++++|++-+.
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccCC
Confidence 77999999999999999999999999999999996 9999999999999999764
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-28 Score=209.46 Aligned_cols=266 Identities=15% Similarity=0.248 Sum_probs=217.4
Q ss_pred EEEEeCCCcEEEEEeecCC---------ceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeec
Q 009188 246 LASSSNDRSAIIWEVDLNG---------GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEK 316 (540)
Q Consensus 246 l~tg~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 316 (540)
+++|+....|.-++++... .......+..|.+++++++.+ +.++|+||.|.+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 6677777766666665332 123356678999999999985 88999999999999999999999999999
Q ss_pred CCCcEEEEEEecCCC--EEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-
Q 009188 317 AGLGLVSCGWHPDRK--WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV- 393 (540)
Q Consensus 317 ~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~- 393 (540)
|.+.|+++.|.++-. .|++|+.||.|.+|+.....+......|...|+.++++|.|+.-++.+.|+.++.||+-.+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999999765 89999999999999999999888888998999999999999999999999999999987766
Q ss_pred EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEE
Q 009188 394 ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW 473 (540)
Q Consensus 394 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iw 473 (540)
.....-....+.+.|+|.|.+++++..+ .|-+|.+... ......... ... +... -.++..+++|++|+.|.+|
T Consensus 162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~~~-~r~--l~~~--~l~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 162 AFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIENP-KRI--LCAT--FLDGSELLVGGDNEWISLK 234 (362)
T ss_pred ceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhhcc-ccc--eeee--ecCCceEEEecCCceEEEe
Confidence 3333334445569999999999888854 5888988764 333322222 111 2222 2467889999999999999
Q ss_pred ECCCCceeEeecCCCCCeEEEEe--CCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 474 HRASCDLIGALPGHSGAVNCVSW--NPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 474 d~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
|..+..+...+.+|...|.++.+ .|++ .+|+|+|.||.|+|||+...
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 99999999999999999999984 4555 59999999999999999876
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-28 Score=208.83 Aligned_cols=264 Identities=18% Similarity=0.263 Sum_probs=212.8
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCC--eEEEeeCCCc
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ--QLLTCGVEEA 299 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg~ 299 (540)
.++..+..|.++|++++. +|.++|+||.|-+|+|||+... .....+..|.+.|+++.|.+.-. .|++|+.||.
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 446678899999999999 5899999999999999999765 45566778999999999998765 9999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
|.+|+.....++..++.|...|+.++.+|.++.-++.+.|+.++.||+-.+.......-.. ..+.+.|+|.|.+++.+.
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999995544433332222 345599999999998877
Q ss_pred cCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCC
Q 009188 380 KESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 380 ~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
.+ .|-+|.+.+.. .........+.++.|. ++..+++|..++.|.+||.... .+...+.+|...+..+.... .+.+
T Consensus 188 ~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~-~~~~ 263 (362)
T KOG0294|consen 188 RN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYT-NPEH 263 (362)
T ss_pred cc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEe-cCCc
Confidence 65 56777776644 3333334556666664 6778999999999999999875 88889999999888776544 7888
Q ss_pred cEEEEeeCCCcEEEEECCCC-----ceeEeecCCCCCeEEEEe
Q 009188 459 AFIASGSEDSQVYIWHRASC-----DLIGALPGHSGAVNCVSW 496 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~ 496 (540)
.+|+++|.||.|+|||+... +++..+.. ...++|+..
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred eEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 99999999999999998765 34444442 445555543
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-27 Score=205.86 Aligned_cols=262 Identities=13% Similarity=0.155 Sum_probs=223.3
Q ss_pred EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC--CCcEEEE
Q 009188 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN--DKSICMW 345 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw 345 (540)
..+.+....+.|.++.|+++|.++++++.|.++++||..+++.++++..+...+..++|....+.++.++. |.+|+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34455566788999999999999999999999999999999999999999889999999888877877776 7899999
Q ss_pred ecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEE
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIH 425 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 425 (540)
++.+.+..+...+|...|.+++.+|-+..+++++.|++|++||++.....-..+...-..++|+|+|-++|++...+.|+
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEE
Confidence 99999999999999999999999999999999999999999999977755555555666789999999999999888999
Q ss_pred EEEecCC-ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCe---EEEEeCCCCC
Q 009188 426 LWNIEGE-VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAV---NCVSWNPANP 501 (540)
Q Consensus 426 i~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~~~~~~ 501 (540)
+||++.- ..+..++...........-..++++|++++.++..+.+++.|.-+|....++.++...- -+.+|+|++.
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 9999864 34555555443333334445559999999999999999999999999999988775432 5778999996
Q ss_pred CEEEEEeCCCcEEEecCCCCCccccccCC
Q 009188 502 HMLASASDDRTIRIWGLKDLNVKRKDCHS 530 (540)
Q Consensus 502 ~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~ 530 (540)
++++|+.||+|.+|++++++...+...+
T Consensus 246 -Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 246 -FVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred -EEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 9999999999999999999887765553
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-26 Score=189.52 Aligned_cols=292 Identities=15% Similarity=0.230 Sum_probs=230.4
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecC------------CceEEEEEecCCCCCeEEEEECcCC
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN------------GGVTLKHKLSGHQKPVSCVSWSSDD 288 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~------------~~~~~~~~~~~h~~~v~~l~~s~~~ 288 (540)
...+.++. .+..|.+++|+|.|.+.|.|+...+.+|-....- ......+.-+.|.+.|+|.+|+|+|
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 34455554 5678999999999999999999999998754311 1122333446789999999999999
Q ss_pred CeEEEeeCCCcEEEEECCCCeE-----EEEeecCCCcEEEEEEecC----CCEEEEEe-CCCcEEEEecCCceEEEeecc
Q 009188 289 QQLLTCGVEEAVRRWDVSSGNC-----LHVYEKAGLGLVSCGWHPD----RKWIFSGA-NDKSICMWELGGKELECWKGQ 358 (540)
Q Consensus 289 ~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 358 (540)
.++++|+.|.+|++.......+ -..+..|.+.|..++|..+ +..|++++ .|..|++-|...++.......
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999999999987654332 2456788999999999763 34566554 456788888877777777777
Q ss_pred ccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEee--------cCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 359 RTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIE--------EDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 359 ~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~--------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
|.+.|.++ ++-+|-.+++|+.|.+|++||++-.. ..... ....|.++++.|.|++|++|..|....+||+
T Consensus 182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 77777665 45678999999999999999998765 22221 2367899999999999999999999999999
Q ss_pred cCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC----ceeEeecCCCCCeEEEEeCCCCCCEEE
Q 009188 430 EGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC----DLIGALPGHSGAVNCVSWNPANPHMLA 505 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~ 505 (540)
+++ .+++.|..|...+. +.-++|...|+.+++.|..|++-|+... -++.....|...+..+.|+|.. .-++
T Consensus 261 rg~-r~iq~f~phsadir---~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d-~sfi 335 (350)
T KOG0641|consen 261 RGG-RMIQRFHPHSADIR---CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD-FSFI 335 (350)
T ss_pred eCC-ceeeeeCCCcccee---EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc-ceee
Confidence 988 89999999988744 4445899999999999999999997631 2234445699999999999988 5899
Q ss_pred EEeCCCcEEEecCC
Q 009188 506 SASDDRTIRIWGLK 519 (540)
Q Consensus 506 s~~~Dg~i~iw~~~ 519 (540)
+.+.|.++.+|-++
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999875
No 78
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.4e-27 Score=232.67 Aligned_cols=246 Identities=12% Similarity=0.225 Sum_probs=191.5
Q ss_pred EeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC-CCeEEEeeCCCcEEEEECCCCe--------EEEEeecCCC
Q 009188 249 SSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVSSGN--------CLHVYEKAGL 319 (540)
Q Consensus 249 g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~ 319 (540)
|+.++.|++|+.... .....+.+|.++|.+++|+|+ +.+|++|+.|++|++||+.++. .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 567889999987543 456788999999999999996 7899999999999999998642 3456778999
Q ss_pred cEEEEEEecCCCE-EEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEE
Q 009188 320 GLVSCGWHPDRKW-IFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERY 396 (540)
Q Consensus 320 ~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~ 396 (540)
.|.+++|+|++.. +++++.|++|++||++++....... +...|.+++|+++|..+++++.|+.|++||+++.. ...
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999999998875 4689999999999998776544333 34579999999999999999999999999999876 334
Q ss_pred eecCCceeE-----EEEcCCCCEEEEEecCC----eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC
Q 009188 397 IEEDQTITS-----FSLSRDNKFLLVNLLNQ----EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED 467 (540)
Q Consensus 397 ~~~~~~i~~-----~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d 467 (540)
..|.+.+.+ ..|++++.++++++.++ .|++||++....++.....+... ..+...+.++++.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~-~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNAS-APLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCc-cceEEeeeCCCCCEEEEEECC
Confidence 456655433 23568899999988764 79999999654566555433332 233344446779999999999
Q ss_pred CcEEEEECCCCceeEeecC--CCCCeEEEEeCCCC
Q 009188 468 SQVYIWHRASCDLIGALPG--HSGAVNCVSWNPAN 500 (540)
Q Consensus 468 g~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~ 500 (540)
+.|++|++..+.. ..+.. +..++.+++|.|..
T Consensus 285 ~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9999999987643 22222 56788999999965
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=238.04 Aligned_cols=247 Identities=20% Similarity=0.325 Sum_probs=201.9
Q ss_pred EEec-CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC--------------------------------C--------
Q 009188 270 HKLS-GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS--------------------------------G-------- 308 (540)
Q Consensus 270 ~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------------------------------~-------- 308 (540)
..+. .|.+.|.++.||+||+|||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3345 8999999999999999999999999999998754 0
Q ss_pred --------------------eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEE
Q 009188 309 --------------------NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEV 368 (540)
Q Consensus 309 --------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 368 (540)
+++..+.+|.+.|.++.|+.++ +|++++.|.+|++|++....+...+.+. ..|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-dfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHN-DFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecC-CeeEEEEe
Confidence 1222355899999999999765 8999999999999999888777776655 49999999
Q ss_pred cc-CCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeC--C--
Q 009188 369 TS-DGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKG--H-- 442 (540)
Q Consensus 369 ~~-~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-- 442 (540)
+| |.+++++|+-||.+++|++.... ........-|++++|.|+|++.++|+.+|.+++|+..+. +....+.. +
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeeccC
Confidence 98 67899999999999999998877 566667789999999999999999999999999999876 44433221 1
Q ss_pred ----cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCC--CeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 443 ----KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSG--AVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 443 ----~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
...++.+.+++..++ -+++.+.|..|+|||.+...++..++|+.. .-....|+.||. .|+++++|..|++|
T Consensus 497 Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk-~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK-HIVSASEDSWVYIW 573 (712)
T ss_pred ccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCC-EEEEeecCceEEEE
Confidence 124566666554444 677788999999999999999999997643 335567899996 89999999999999
Q ss_pred cCCCCC
Q 009188 517 GLKDLN 522 (540)
Q Consensus 517 ~~~~~~ 522 (540)
++....
T Consensus 574 ~~~~~~ 579 (712)
T KOG0283|consen 574 KNDSFN 579 (712)
T ss_pred eCCCCc
Confidence 985443
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.2e-29 Score=219.70 Aligned_cols=261 Identities=15% Similarity=0.275 Sum_probs=214.1
Q ss_pred EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC---eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 009188 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG---NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICM 344 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 344 (540)
....+..|.+.|.-+.||++|++||+++.|.+..+|++... +..+++.+|..+|..+.|+||.+++++++.+..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34567899999999999999999999999999999987654 447788899999999999999999999999999999
Q ss_pred EecCCceEEEeeccc-cceEEEEEEccCCCEEEEEecCCeEEEEECCCceEE-Ee-ecCCceeEEEEcCCCCEEEEEecC
Q 009188 345 WELGGKELECWKGQR-TLKISDLEVTSDGKQIITMCKESALLLLDREAKVER-YI-EEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 345 wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~-~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
||..++......... ...+.+.+|.|||..+++|+.|+.+..||..+.... .. .....|.++++++||+++++.+.|
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 999988876655443 568999999999999999999999999999987621 11 223568999999999999999999
Q ss_pred CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCC--eEEEEeCCC
Q 009188 422 QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGA--VNCVSWNPA 499 (540)
Q Consensus 422 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~ 499 (540)
..|++|+..+. .... +.....+ +.....+.+++++.+.-.+..|++||+...+.+..+.||... |..-+|.-.
T Consensus 376 ~~i~l~~~e~~-~dr~-lise~~~---its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 376 KKIRLYNREAR-VDRG-LISEEQP---ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred cceeeechhhh-hhhc-cccccCc---eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 99999998764 2222 2222233 333334889999999999999999999999999999999754 444456554
Q ss_pred CCCEEEEEeCCCcEEEecCCCCCccccccCCCce
Q 009188 500 NPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 500 ~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v 533 (540)
+..+++|||.|+.|+||+-.+++++.....+.+.
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 4459999999999999999999998875544443
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.1e-29 Score=206.90 Aligned_cols=242 Identities=14% Similarity=0.242 Sum_probs=205.2
Q ss_pred CcCcEEEEEEecC-CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCC
Q 009188 230 HTDEVWFLQFSHN-GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSS 307 (540)
Q Consensus 230 h~~~V~~~~~sp~-g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~ 307 (540)
-.+.+..++|+++ .+.+++++.||+++|||... ...++..++.|...|.++.|++ ++..++++|.|++|++|+..-
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 4678999999995 45888999999999999653 3457888999999999999998 456788889999999999999
Q ss_pred CeEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc-CCCEEEEEecCCeEE
Q 009188 308 GNCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS-DGKQIITMCKESALL 385 (540)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~ 385 (540)
++.+.++.+|...|...+|+| ..+.+++++.||++++||++..-.......|...+.++.|+. +.+.+++|+.|+.|+
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 999999999999999999999 678999999999999999975333333556667999999986 557788999999999
Q ss_pred EEECCCce---EEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEE
Q 009188 386 LLDREAKV---ERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI 461 (540)
Q Consensus 386 ~~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 461 (540)
.||++.-. ....+|.-.|+.+.|||.. ..|++++.|-+++|||...+...+.+...|..-+..+.+..+ ++.++
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~--~~~~v 294 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF--DPGQV 294 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc--cCcee
Confidence 99988754 5667889999999999965 788999999999999998776777788877776555555543 67899
Q ss_pred EEeeCCCcEEEEEC
Q 009188 462 ASGSEDSQVYIWHR 475 (540)
Q Consensus 462 ~s~s~dg~i~iwd~ 475 (540)
|+.+.|+.++||+.
T Consensus 295 As~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 295 ASTGWDELLYVWNP 308 (311)
T ss_pred eecccccceeeecc
Confidence 99999999999984
No 82
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1e-28 Score=233.48 Aligned_cols=323 Identities=17% Similarity=0.265 Sum_probs=252.4
Q ss_pred hcccccCCCCCCccccCCCcC-c---CCCCcceEEecccCcCcEEEEEEecC-----------CCeEEEEeCCCcEEEEE
Q 009188 195 ACMFHNSSDRDMSLYTDHQCG-R---DQIPSRTLQILQGHTDEVWFLQFSHN-----------GKYLASSSNDRSAIIWE 259 (540)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~~h~~~V~~~~~sp~-----------g~~l~tg~~dg~i~iwd 259 (540)
.|.|....+....+|.+|+.- | +.........+--|...||.+.--|. ...++|++.|++|++|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 344444444444555555542 1 11112223445569999999887661 23589999999999999
Q ss_pred eecCCceEEE----------------------------------EEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 260 VDLNGGVTLK----------------------------------HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 260 ~~~~~~~~~~----------------------------------~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
++........ ...-+....+.+++.+|+|++|++|..-|.++||++
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL 488 (1080)
T ss_pred cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEe
Confidence 8752111110 001123456999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEec---CCCEEEEEeCCCcEEEEecC-CceEEEeeccccceEEEEEEccCC--CEEEEEe
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHP---DRKWIFSGANDKSICMWELG-GKELECWKGQRTLKISDLEVTSDG--KQIITMC 379 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~ 379 (540)
.+-+....+..|...|.|+.|+. ..++|++++.|.-|.+||+. ...+......|...|+++.|..+| ..+++++
T Consensus 489 q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG 568 (1080)
T KOG1408|consen 489 QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG 568 (1080)
T ss_pred hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc
Confidence 99999999999999999999986 45689999999999999994 566667778888899999998887 7788999
Q ss_pred cCCeEEEEECCCce--EE-----EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCC-eeEEEe
Q 009188 380 KESALLLLDREAKV--ER-----YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS-RFVIRS 451 (540)
Q Consensus 380 ~d~~i~~~d~~~~~--~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~ 451 (540)
.|..|.+--..... .. .......+..+++.|..+++++++.|..|+|||+.++ +..+.|++.... ...|..
T Consensus 569 ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 569 ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEE
Confidence 99887665443211 11 2223567889999999999999999999999999988 788888875544 444554
Q ss_pred eeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 452 CFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
.. .|.|.|+++...|.++.++|..+|+++.+..||...|+.+.|.+|.+ .|++.+.||.|.||.+..
T Consensus 648 ~l-DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 IL-DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EE-CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECch
Confidence 44 89999999999999999999999999999999999999999999996 899999999999999875
No 83
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=9.3e-28 Score=226.77 Aligned_cols=283 Identities=16% Similarity=0.313 Sum_probs=241.4
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEE-EEECc-CCCeEEEeeCCCc
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC-VSWSS-DDQQLLTCGVEEA 299 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~-~~~~l~s~~~dg~ 299 (540)
+..+.+.||+..|..+++.+. ..++++|.||++++|+-. ++.....+.+.+|.+.|.+ +++.+ ++..+++|+.|.+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 456789999999999988754 479999999999999865 3344455677888888877 88875 5557999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
|.+|...+..+...+.+|...|.++....++. +++|+.|.++++|-... +......|...|.++..-|++ .+++|+
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEecc
Confidence 99999999999999999999999999887776 99999999999998743 223367788899999999988 899999
Q ss_pred cCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc
Q 009188 380 KESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 380 ~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 459 (540)
.|.+|++|.-.+....+.+|...|+.+++-+++ .+++++.||.|++|++.+ ..+..+.+|..-++.+.. ..++.
T Consensus 159 aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~---~~~~~ 232 (745)
T KOG0301|consen 159 ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISM---ALSDG 232 (745)
T ss_pred CcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEe---cCCCC
Confidence 999999999988778889999999999999775 477888999999999954 678889999998888873 46778
Q ss_pred EEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 460 FIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
.++++++|++++||+.. .+.+.+.-....|+++.+-++|. +++|+.||.||||....
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEecc
Confidence 99999999999999976 77777774455899999998886 89999999999998874
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.5e-28 Score=201.98 Aligned_cols=251 Identities=18% Similarity=0.285 Sum_probs=216.3
Q ss_pred EEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEE--eecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEe
Q 009188 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV--YEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWE 346 (540)
Q Consensus 270 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 346 (540)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++.++.... ..+|.+.|-.++|+| +...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45678999999999999999999999999999999987755443 457888899999998 567899999999999999
Q ss_pred cCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEE
Q 009188 347 LGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIH 425 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 425 (540)
++.+++........ .-..+.|+|+|.++++++.|..|.+.|.++.. .........+.-++|+.++.+++.....|+|.
T Consensus 94 ~r~~k~~~~i~~~~-eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKG-ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccC-cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 98776655544433 34568899999999999999999999998866 44555667788899998888888888889999
Q ss_pred EEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEE
Q 009188 426 LWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLA 505 (540)
Q Consensus 426 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 505 (540)
|...... +++..++.|.....+|.+ +|+|+++|+|+.|..+.+||+...-++..+..+.-+|..++|+.+|. +||
T Consensus 173 ILsypsL-kpv~si~AH~snCicI~f---~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~-~lA 247 (313)
T KOG1407|consen 173 ILSYPSL-KPVQSIKAHPSNCICIEF---DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR-MLA 247 (313)
T ss_pred EEecccc-ccccccccCCcceEEEEE---CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc-eee
Confidence 9998866 889999999977555444 99999999999999999999999989999999999999999999995 999
Q ss_pred EEeCCCcEEEecCCCCCcccc
Q 009188 506 SASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 506 s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
++|.|..|-|=++++|.....
T Consensus 248 SaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred ccCccceEEeEecccCCeEEE
Confidence 999999999999988876654
No 85
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=227.88 Aligned_cols=213 Identities=19% Similarity=0.283 Sum_probs=174.4
Q ss_pred EecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCc----eEEEEEecCCCCCeEEEEECcCC-CeEEEeeCCC
Q 009188 225 QILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGG----VTLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEE 298 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg 298 (540)
..+.||.+.|++++|+| ++++|++|+.||+|++||+..++. ......+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34789999999999999 889999999999999999975421 13456788999999999999985 6999999999
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccc-eEEEEEEccCCCEEEE
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTL-KISDLEVTSDGKQIIT 377 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~ 377 (540)
+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.||.|++||++++........|.. ....+.|.+++..+++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 999999999999999999999999999999999999999999999999987766554444433 3456778888888776
Q ss_pred Ee----cCCeEEEEECCCce--EEEe--ecCCceeEEEEcCCCCEEEEEec-CCeEEEEEecCCceeeeE
Q 009188 378 MC----KESALLLLDREAKV--ERYI--EEDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEGEVKLVAK 438 (540)
Q Consensus 378 ~~----~d~~i~~~d~~~~~--~~~~--~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~ 438 (540)
++ .|+.|++||+++.. .... .....+....|+++++++++++. |+.|++||+.++ .+...
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~ 297 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFC 297 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEE
Confidence 54 47899999998643 2221 23345566778999999998874 999999999876 44433
No 86
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=204.71 Aligned_cols=294 Identities=23% Similarity=0.411 Sum_probs=219.2
Q ss_pred CCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC
Q 009188 218 QIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE 297 (540)
Q Consensus 218 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 297 (540)
..|.+.-.++.... -.|+.|++.|.+||+|+.||.|.|||+.+. ...+.+.+|..+|.+++||++|+.|+|+|.|
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCC
Confidence 34455555555333 789999999999999999999999999865 4567789999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCceEEEeecccc----ceEEEEEEccCC
Q 009188 298 EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQRT----LKISDLEVTSDG 372 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~i~~~~~~ 372 (540)
..|.+||+..|.+++.+ ...++|+.+.|+|. .+.+++.-.+..-.+.++............. ....+..|.+.|
T Consensus 87 ~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred ceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 99999999999998888 55679999999993 3444444444444555554332222221111 122334688999
Q ss_pred CEEEEEecCCeEEEEECCCce--EEEe-ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc--------eeeeEeeC
Q 009188 373 KQIITMCKESALLLLDREAKV--ERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV--------KLVAKYKG 441 (540)
Q Consensus 373 ~~l~~~~~d~~i~~~d~~~~~--~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~ 441 (540)
+++++|...|.+.++|..+.. ..+. .....|.++.++..|++++..+.|..|+.|+++.-. .+..++..
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 999999999999999998865 2222 224688999999999999999999999999986311 11111111
Q ss_pred CcCCeeEEEeeeccCCCcEEEEeeC-CCcEEEEECCCCceeEeecCCC-CCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 442 HKRSRFVIRSCFGGLEQAFIASGSE-DSQVYIWHRASCDLIGALPGHS-GAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 442 ~~~~~~~i~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
--+...--.+|| +.+|.|++.|+. -..++||....|.+++.+.|.. ....++.|+|-.+ .+++. ..|.|+||...
T Consensus 246 vVNk~~Wk~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp-~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 246 VVNKLQWKKCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP-IIASI-ASGVVYIWAVV 322 (405)
T ss_pred HHhhhhhhheee-cCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee-eeeec-cCCceEEEEee
Confidence 111111122344 779999887764 4579999999999999999877 5678899999886 77776 78899999876
Q ss_pred C
Q 009188 520 D 520 (540)
Q Consensus 520 ~ 520 (540)
.
T Consensus 323 ~ 323 (405)
T KOG1273|consen 323 Q 323 (405)
T ss_pred c
Confidence 4
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=204.47 Aligned_cols=254 Identities=21% Similarity=0.310 Sum_probs=217.6
Q ss_pred CCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 219 ~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
-...-+.++.||++.|++...+.+....|+++.|-+.++||.-++. .++.+ .|..-|.+++|+.|.++|++|+.+.
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd---elhsf-~hkhivk~~af~~ds~~lltgg~ek 122 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD---ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEK 122 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh---hhhhh-hhhheeeeEEecccchhhhccchHH
Confidence 3455688999999999999999999899999999999999987764 33333 5888899999999999999999999
Q ss_pred cEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEE
Q 009188 299 AVRRWDVSSG-NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIIT 377 (540)
Q Consensus 299 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 377 (540)
.++|+|++.. .+...+.+|.+.|..+.|....+.|++++.|++|++||.+++......... .+|+++.++++|+++.+
T Consensus 123 llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 123 LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTI 201 (334)
T ss_pred HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEE
Confidence 9999999875 356778899999999999999999999999999999999987776655443 38999999999987655
Q ss_pred EecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccC
Q 009188 378 MCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL 456 (540)
Q Consensus 378 ~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 456 (540)
...+.|.+||..+-. .........|.+.+++|+...+++|+.|..++.||..++..+....++|.+++.++++ +|
T Consensus 202 -a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF---SP 277 (334)
T KOG0278|consen 202 -AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF---SP 277 (334)
T ss_pred -ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE---CC
Confidence 567789999998854 6667778889999999999999999999999999999985444434888888666655 99
Q ss_pred CCcEEEEeeCCCcEEEEECCCCcee
Q 009188 457 EQAFIASGSEDSQVYIWHRASCDLI 481 (540)
Q Consensus 457 ~~~~l~s~s~dg~i~iwd~~~~~~~ 481 (540)
+|...++||+||+|++|....++..
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999998776644
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.7e-27 Score=229.87 Aligned_cols=264 Identities=22% Similarity=0.370 Sum_probs=221.1
Q ss_pred CCCCcceEEe-cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee
Q 009188 217 DQIPSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG 295 (540)
Q Consensus 217 ~~~~~~~~~~-l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 295 (540)
+..+...+.. +.||.+.|+++++..-+.++++|+.|.++++||+.++ .+...+.+|.+.|.++... +..+++|+
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~stv~~~~~~--~~~~~sgs 308 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTSSVRCLTID--PFLLVSGS 308 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEecCCCceEEEEEcc--CceEeecc
Confidence 3445666666 9999999999999877889999999999999998877 7888999999999999875 45788899
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEE
Q 009188 296 VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
.|.+|++|++.++.++..+.+|..+|.++..+ +.++++|+.||+|++||+.+.++......|...|.++.+.+. ..+
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~ 385 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRL 385 (537)
T ss_pred CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceE
Confidence 99999999999999999999999999999987 779999999999999999999999888889999999988766 899
Q ss_pred EEEecCCeEEEEECCCc-e--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeC-CcCCeeEEEe
Q 009188 376 ITMCKESALLLLDREAK-V--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKG-HKRSRFVIRS 451 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~-~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~ 451 (540)
++|+.|++|++||+.+. . ..+..|..-+..+ ...+++|++++.|+.|++||...+ .....+.+ +...+..+..
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred EeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccccEEEeecccC-ceeeeeccCCcccEEEeec
Confidence 99999999999999998 4 4444555555333 447889999999999999999988 77888877 4454443322
Q ss_pred eeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC-CCeEEEEe
Q 009188 452 CFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS-GAVNCVSW 496 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~ 496 (540)
....+++++.||.+++||++++++...+-.+. .....+++
T Consensus 463 -----~~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 463 -----GKEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred -----CcceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 24678999999999999999999988774333 33344444
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2e-26 Score=197.99 Aligned_cols=270 Identities=19% Similarity=0.253 Sum_probs=217.7
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
..+.|.++.|+|.+..|++++.||++++|+.... .. ...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l-~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SL-KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---hh-hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 4678999999999999999999999999999755 22 22346899999999986 5688999999999999998887
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEEC
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDR 389 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~ 389 (540)
.. .+..|..++.|+.+++....+++|+.|++|++||.+............ .|.++.. .|..|++|+.+..+.+||+
T Consensus 87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred ce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeecCceEEEEEc
Confidence 54 445889999999999988899999999999999998744443333332 6666655 5789999999999999999
Q ss_pred CCceEE----EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc---eeeeEeeCCc------CCeeEEEeeeccC
Q 009188 390 EAKVER----YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGHK------RSRFVIRSCFGGL 456 (540)
Q Consensus 390 ~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~------~~~~~i~~~~~~~ 456 (540)
++.... ....+-.+.++++.|++.-+++++.+|.|.+=.++... .....|+.|. .-.+.+....++|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 986622 23445678999999999999999999998876554431 1122344443 3456666777788
Q ss_pred CCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 457 EQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 457 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
-...++||+.||.|.+||..+.+.+..+......|.+++|+.+|. .||.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS-LLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCC-eEEEEec
Confidence 888999999999999999999999999988888899999999997 8887764
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-28 Score=228.71 Aligned_cols=275 Identities=17% Similarity=0.290 Sum_probs=232.7
Q ss_pred cCCCeEEEEeCCCcEEEEEeecCCc---eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC--eEEEEee
Q 009188 241 HNGKYLASSSNDRSAIIWEVDLNGG---VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG--NCLHVYE 315 (540)
Q Consensus 241 p~g~~l~tg~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~ 315 (540)
|.++||+|||.||.|++|+...... ......++.|.+.|+.+....+++.|+++|.|-+|++|+...+ -|..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 4677899999999999999875433 1235678899999999999999999999999999999999887 6788899
Q ss_pred cCCCcEEEEEE-ecCCCEEEEEeCCCcEEEEecCCceE--E---------EeeccccceEEEEEEccCCCEEEEEecCCe
Q 009188 316 KAGLGLVSCGW-HPDRKWIFSGANDKSICMWELGGKEL--E---------CWKGQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 316 ~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~--~---------~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
.|...|.|+++ .++...+++|+-|+.|.+||++++.. . ....++...|.+++.++.|..+++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999 77888999999999999999986522 1 112255568999999999999999999999
Q ss_pred EEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEE
Q 009188 384 LLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI 461 (540)
Q Consensus 384 i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 461 (540)
+++||.++.. ....+|...|..+..++||+.+++++.||+|++||+... +++.++..|...++.+.+ +++-..+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~---~~sf~~v 270 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQS---SPSFTHV 270 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEee---CCCcceE
Confidence 9999999866 667799999999999999999999999999999999887 888999999998776655 6888999
Q ss_pred EEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 462 ASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 462 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
++|+.||.|+.=|+++......+-....+|..+..+.... -+-+++.|+.|+-|...-
T Consensus 271 YsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~-~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 271 YSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred EecCCCCcEEecccCCchhheEeecCCCchhhhhhccccC-CceeeeccccceecCCcc
Confidence 9999999999999998543333333567788888875554 357788899999998753
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.8e-28 Score=211.28 Aligned_cols=271 Identities=18% Similarity=0.314 Sum_probs=221.9
Q ss_pred ccccCCCCCCccccCCCcC-cCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec-C
Q 009188 197 MFHNSSDRDMSLYTDHQCG-RDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS-G 274 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~ 274 (540)
+.+++-|+.+.+|+-..-. +..........+--|.++|.|+.||.|..+||+|+.||.|++|.+.++ .+++.+. .
T Consensus 228 LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG---~ClRrFdrA 304 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG---QCLRRFDRA 304 (508)
T ss_pred EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc---hHHHHhhhh
Confidence 3455566666676533211 111122223344458899999999999999999999999999999987 4555555 8
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC 354 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 354 (540)
|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.+.+|.+.|+...|.+||.++++++.||+|++|+..+.++..
T Consensus 305 HtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 305 HTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred hccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred eecc--ccceEEEEEEcc-CCCEEEEEecCCeEEEEECCCceEEEee----cCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009188 355 WKGQ--RTLKISDLEVTS-DGKQIITMCKESALLLLDREAKVERYIE----EDQTITSFSLSRDNKFLLVNLLNQEIHLW 427 (540)
Q Consensus 355 ~~~~--~~~~v~~i~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 427 (540)
.... ...+|.++-.-| +...++++...+++++.++.+...+.+. ..+...+.+.+|.|.++.+.+.|+.++.|
T Consensus 385 Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 385 TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 4433 334677766655 4578999999999999999998855543 45667888999999999999999999999
Q ss_pred EecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 428 NIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
...++ .+..++..|...+..+.. .|..+.+|+-++||.+++|.
T Consensus 465 ~~~sG-~LE~tl~VhEkdvIGl~H---HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSG-KLERTLPVHEKDVIGLTH---HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecC-ceeeeeeccccccccccc---CcccchhhhhcccchhhhcC
Confidence 99888 788888888876555443 78999999999999999994
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.7e-27 Score=209.28 Aligned_cols=437 Identities=17% Similarity=0.205 Sum_probs=284.9
Q ss_pred HHHHHHHhhcChHH-HHHHHHHhcCCcc--------cCh---HHHHHHHHHhcCChHHHHHHhcccCCCChhhHhhHHHH
Q 009188 27 RIIAKALYSLGYTK-SGAHLEEESGIPL--------HSS---MVNLFTQQILDGHWDESLATLSKIGLVDESVVKSASFL 94 (540)
Q Consensus 27 ~li~q~L~e~g~~~-s~~~L~~Es~~~~--------~~~---~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~ 94 (540)
|||.||+.|+|=.- |-+-|..|-=|.+ ..+ .+-.+.. .++.+||.+|..-+.|+......+++++..
T Consensus 26 rLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~v~pk~~satSIPalL~-~lQdEWDavML~~F~LRqqL~ttrQELSha 104 (506)
T KOG0289|consen 26 RLIEQYIAETGKDPITNEPLSIEELVEIKVPAQVRPKPPSATSIPALLK-TLQDEWDAVMLESFTLRQQLQTTRQELSHA 104 (506)
T ss_pred HHHHHHHHHcCCCCCCCCcCCHHHeeeccccccccCCCCCccchHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 89999999999432 1122222211111 111 1222222 357899999998888888888999999999
Q ss_pred Hhhhhhhhcccc---cchhHHHHHHHhhccCCCC--CchhHHHhhcccccCCccccccCC-CCcccccccHHHHHHHHhh
Q 009188 95 ILEQKFFELLDA---EKVMDALKTLRAEIAPLCI--KNSRVRELSSCIVSPPKCVVVCSP-KQDIVRAKSRPKLLEELQK 168 (540)
Q Consensus 95 l~~~~~lell~~---~~~~~a~~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~r~~l~~~~~~ 168 (540)
+||++-.-.+.. .|+.+|.+.|.+ ++|-.. .++.+..+... .......... ...+..+.-+..+.+..+.
T Consensus 105 LYqhDAAcrViaRL~kE~~eareaLa~-~~~qa~a~~peav~~~~~~---s~~~va~ge~~d~~g~s~~i~~~l~~~aq~ 180 (506)
T KOG0289|consen 105 LYQHDAACRVIARLTKERDEAREALAK-LSPQAGAIVPEAVPSLAQS---SVVGVAAGESEDQPGLSPEIIQKLEDKAQV 180 (506)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhh-cCccccccccccccccccc---chhhhhcCCccccccCCHHHHHHHHHHHHH
Confidence 999997666644 666667666665 443221 11111111110 0000000000 0011111112222221111
Q ss_pred cC---CCC-CCcChhHH-HHHHHHHHHHHHhhcccccC-CCCCCccccCCC-----c--------CcCCCCcceEEeccc
Q 009188 169 LL---PPM-IMIPERRL-EHLVEQALVLQREACMFHNS-SDRDMSLYTDHQ-----C--------GRDQIPSRTLQILQG 229 (540)
Q Consensus 169 ~~---~~~-~~~p~~rl-~~ll~~~~~~q~~~~~~~~~-~~~~~~~~~~~~-----~--------~~~~~~~~~~~~l~~ 229 (540)
+- ... ..+|+.-. ..-+.+..+...... +|.. ..+...+...+. + -.+....+.+..++|
T Consensus 181 ls~~rKkrg~k~p~~la~~d~~~~~~q~ash~g-LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G 259 (506)
T KOG0289|consen 181 LSQERKKRGKKLPEKLATTDELSCLLQVASHTG-LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG 259 (506)
T ss_pred HHHHhhhccccCCcccccHHHHHHHHhcCCCcc-eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC
Confidence 10 000 01121100 000111111111110 1111 111111111110 0 013334567889999
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
|...|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+..+|.|.||++++.|++..+.|+++|.
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~ 336 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS 336 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence 99999999999999999999999999999987653 345567899999999999999999999999999999999999
Q ss_pred EEEEeec--CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEE
Q 009188 310 CLHVYEK--AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLL 387 (540)
Q Consensus 310 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~ 387 (540)
++..... ..-.+++.+|+|||..|.+|..||.|+|||+..+.....+..|.++|..++|+.+|.++++++.|+.|++|
T Consensus 337 ~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 337 QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence 8877654 33468999999999999999999999999998887777778899999999999999999999999999999
Q ss_pred ECCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC-ceeeeEeeCCcCCeeEEEeeeccCCCcEEEE
Q 009188 388 DREAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE-VKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 388 d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
|++..+ ........++.+++|++.|.+++.++.+=.|++++-.+. ...+..+..|.+....+ .++....++++
T Consensus 417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v---~Fg~~aq~l~s 493 (506)
T KOG0289|consen 417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV---RFGEHAQYLAS 493 (506)
T ss_pred EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee---eecccceEEee
Confidence 999865 222234457999999999999999987767777664332 24455555565443333 34778899999
Q ss_pred eeCCCcEEEEEC
Q 009188 464 GSEDSQVYIWHR 475 (540)
Q Consensus 464 ~s~dg~i~iwd~ 475 (540)
+|.|..++++.+
T Consensus 494 ~smd~~l~~~a~ 505 (506)
T KOG0289|consen 494 TSMDAILRLYAL 505 (506)
T ss_pred ccchhheEEeec
Confidence 999999888754
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.1e-27 Score=214.30 Aligned_cols=251 Identities=18% Similarity=0.400 Sum_probs=203.9
Q ss_pred ccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCce-------EEEEEecCCCCCeEEEEECcC-CCeEEEeeCCC
Q 009188 228 QGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGV-------TLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEE 298 (540)
Q Consensus 228 ~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg 298 (540)
-.|.+.|+.+.+-|... .+|+++..+.|.|||....... .+...+.+|.+.-++++|++. .-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35999999999999655 6677888899999998754322 223378899998889999985 45889999999
Q ss_pred cEEEEECCCCe-------EEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCc--eEEEeeccccceEEEEEE
Q 009188 299 AVRRWDVSSGN-------CLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGK--ELECWKGQRTLKISDLEV 368 (540)
Q Consensus 299 ~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~ 368 (540)
.|.+||+.... ....+.+|...|..++|++ +...|++++.|+.+.|||+++. +.....
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~------------ 268 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV------------ 268 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc------------
Confidence 99999997532 3567789999999999999 5668889999999999999852 221122
Q ss_pred ccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCee
Q 009188 369 TSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRF 447 (540)
Q Consensus 369 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 447 (540)
..|.+.+.+++|+| ++..||+|+.|++|.+||+++...++..+.+|...++
T Consensus 269 ----------------------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~ 320 (422)
T KOG0264|consen 269 ----------------------------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF 320 (422)
T ss_pred ----------------------------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceE
Confidence 23556677777777 4567888899999999999998889999999999987
Q ss_pred EEEeeeccCCCcEEEEeeCCCcEEEEECCCC--------------ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcE
Q 009188 448 VIRSCFGGLEQAFIASGSEDSQVYIWHRASC--------------DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 448 ~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i 513 (540)
.+.+. +.....||+++.|+.+.+||+..- +++..-.||...|..+.|+|..+..++|.+.|+.+
T Consensus 321 ~V~WS--Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 321 QVEWS--PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred EEEeC--CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 77653 345678999999999999998642 34567779999999999999999999999999999
Q ss_pred EEecCCC
Q 009188 514 RIWGLKD 520 (540)
Q Consensus 514 ~iw~~~~ 520 (540)
.||++..
T Consensus 399 qIW~~s~ 405 (422)
T KOG0264|consen 399 QIWQMAE 405 (422)
T ss_pred EEeeccc
Confidence 9999974
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.8e-27 Score=220.63 Aligned_cols=265 Identities=18% Similarity=0.282 Sum_probs=221.5
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecC-CC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG-HQ 276 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-h~ 276 (540)
+..+....+.+|.... .........+.+.|+++.|+++|.+||+|..+|.|.|||.... +....+.+ |.
T Consensus 191 laValg~~vylW~~~s-------~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~~~~h~ 260 (484)
T KOG0305|consen 191 LAVALGQSVYLWSASS-------GSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTLRGSHA 260 (484)
T ss_pred EEEEecceEEEEecCC-------CceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cccccccCCcC
Confidence 3344444566665432 3344444445899999999999999999999999999998755 44556677 99
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEE-eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV-YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW 355 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 355 (540)
..|-+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+.+.|||.........
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence 999999998 67899999999999999998766555 888999999999999999999999999999999988777777
Q ss_pred eccccceEEEEEEccCC-CEEEEEe--cCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEE--ecCCeEEEEEe
Q 009188 356 KGQRTLKISDLEVTSDG-KQIITMC--KESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVN--LLNQEIHLWNI 429 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~-~~l~~~~--~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~i~d~ 429 (540)
...|...|..++|+|-. ..||+|+ .|+.|++||..++. .........|+++.|++..+-++++ ..++.|.||+.
T Consensus 339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 88888899999999965 5566554 79999999999877 6677788999999999999877774 45778999999
Q ss_pred cCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC
Q 009188 430 EGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 478 (540)
.+. +.+..+.+|...+..+ .++|+|..+++|+.|.++++|++-..
T Consensus 419 ps~-~~~~~l~gH~~RVl~l---a~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 419 PSM-KLVAELLGHTSRVLYL---ALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ccc-ceeeeecCCcceeEEE---EECCCCCEEEEecccCcEEeccccCC
Confidence 886 7888899999875444 34999999999999999999998764
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=8.1e-28 Score=213.86 Aligned_cols=262 Identities=19% Similarity=0.324 Sum_probs=216.5
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
++.+.|..+.+|..... ....+.+|.|..++|+++.|.++++++++++.|+.+++|+++.. ....++.+|.+
T Consensus 191 atgg~Dr~Ik~W~v~~~-----k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~---r~~~TLsGHtd 262 (459)
T KOG0288|consen 191 ATGGSDRIIKLWNVLGE-----KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL---RLRHTLSGHTD 262 (459)
T ss_pred hhcchhhhhhhhhcccc-----hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch---hhhhhhccccc
Confidence 44556666677753321 13467889999999999999999999999999999999999755 67789999999
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG 357 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 357 (540)
.|+++.|......+++|+.|.+|++||+....|.+++- ..+.+..++.+ ...+++|-.|+.|++||.++........
T Consensus 263 kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~ 339 (459)
T KOG0288|consen 263 KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP 339 (459)
T ss_pred ceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEee
Confidence 99999999877779999999999999999998888763 33455566655 5578899999999999998877776666
Q ss_pred cccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEE-e-----ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 358 QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY-I-----EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
.+. .|+++..+++|..+++.+.|.++.+.|.++..... . ......+.+.|||++.|+++|+.||.|+||++.+
T Consensus 340 ~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 340 LGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred cCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence 554 89999999999999999999999999999976222 1 2334588999999999999999999999999998
Q ss_pred CceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEE
Q 009188 432 EVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW 473 (540)
Q Consensus 432 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iw 473 (540)
+ ++...+....... .+.++.|++.|..+++++.++.+.+|
T Consensus 419 g-KlE~~l~~s~s~~-aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 419 G-KLEKVLSLSTSNA-AITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred c-eEEEEeccCCCCc-ceEEEEEcCCCchhhcccCCcceEec
Confidence 8 7777776555442 45566668999999999999999999
No 96
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.4e-25 Score=219.68 Aligned_cols=228 Identities=13% Similarity=0.141 Sum_probs=179.1
Q ss_pred eeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCce--------EEEeeccccceEE
Q 009188 294 CGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKE--------LECWKGQRTLKIS 364 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~ 364 (540)
|+.++.|++|+......+..+.+|...|.+++|+|+ +++|++|+.||+|++||+.+.. .......|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567888999998888888899999999999999996 7899999999999999996431 1223455677899
Q ss_pred EEEEccCCCEE-EEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCC
Q 009188 365 DLEVTSDGKQI-ITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 365 ~i~~~~~~~~l-~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
+++|+|++..+ ++++.|++|++||+++.. .....+...|.+++|+|+|++|++++.|+.|++||++++ ..+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEEecc
Confidence 99999998765 688999999999998876 333446678999999999999999999999999999987 677788888
Q ss_pred cCCeeEEE--eeeccCCCcEEEEeeCCC----cEEEEECCC-CceeEeecC--CCCCeEEEEeCCCCCCEEEEEeCCCcE
Q 009188 443 KRSRFVIR--SCFGGLEQAFIASGSEDS----QVYIWHRAS-CDLIGALPG--HSGAVNCVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 443 ~~~~~~i~--~~~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~Dg~i 513 (540)
.+...... ...+++++.++++++.|+ .|+|||+++ ++++..+.. +.+.+......+++ .++++|+.|++|
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-LIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-CEEEEEECCCeE
Confidence 87543322 222357888888888774 799999985 566655442 33333333334445 589999999999
Q ss_pred EEecCCCCCc
Q 009188 514 RIWGLKDLNV 523 (540)
Q Consensus 514 ~iw~~~~~~~ 523 (540)
++|++..+.+
T Consensus 288 r~~e~~~~~~ 297 (568)
T PTZ00420 288 RYYQHSLGSI 297 (568)
T ss_pred EEEEccCCcE
Confidence 9999987754
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.7e-26 Score=229.66 Aligned_cols=253 Identities=21% Similarity=0.322 Sum_probs=208.3
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeec------C---------CceEEEEEecCCCCCeEEEEEC
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDL------N---------GGVTLKHKLSGHQKPVSCVSWS 285 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~------~---------~~~~~~~~~~~h~~~v~~l~~s 285 (540)
++.+.....|.+.|+|+.|+|||++||+||.|+.|.||.... . ..++....+.+|.+.|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 456777888999999999999999999999999999999872 0 1245677899999999999999
Q ss_pred cCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc------c
Q 009188 286 SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ------R 359 (540)
Q Consensus 286 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~ 359 (540)
|++.+|++++.|++|.|||..+.+.+..+.+|.+.|..+.|.|-|++|++-+.|++|++|++....+...... .
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999866444433222 2
Q ss_pred cceEEEEEEccCCCEEEEEe----cCCeEEEEECCCce--EEEeecCCceeEEEEcCC-----CC------------EEE
Q 009188 360 TLKISDLEVTSDGKQIITMC----KESALLLLDREAKV--ERYIEEDQTITSFSLSRD-----NK------------FLL 416 (540)
Q Consensus 360 ~~~v~~i~~~~~~~~l~~~~----~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~-----~~------------~l~ 416 (540)
...+..+.|+|||.+|++.. ...++.+.+..+-. ..+.+|..++.++.|+|. .+ .++
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 23578899999999999775 33467888876644 778899999999999982 12 678
Q ss_pred EEecCCeEEEEEecCCceeeeEee-CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 417 VNLLNQEIHLWNIEGEVKLVAKYK-GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 417 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
+|+.|++|.||..... +++.... -.... +.-..|+|+|..|+.+|.||+|.+.....
T Consensus 299 vgSqDrSlSVW~T~~~-RPl~vi~~lf~~S---I~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 299 VGSQDRSLSVWNTALP-RPLFVIHNLFNKS---IVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EecCCccEEEEecCCC-CchhhhhhhhcCc---eeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 8999999999998654 4433322 22222 33344599999999999999999998764
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.9e-27 Score=193.97 Aligned_cols=249 Identities=16% Similarity=0.248 Sum_probs=203.7
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc--CCCeEEEeeCCCcEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCGVEEAVRR 302 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~i 302 (540)
..-..|.+.|..+...--|+.|||++.|++|+|+....++...++.++.+|.++|..++|.. .|.+||+++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 34567999999999988999999999999999999998777788899999999999999976 7999999999999999
Q ss_pred EECCCCeE--EEEeecCCCcEEEEEEecC--CCEEEEEeCCCcEEEEecCCc---eEEEeeccccceEEEEEEccC---C
Q 009188 303 WDVSSGNC--LHVYEKAGLGLVSCGWHPD--RKWIFSGANDKSICMWELGGK---ELECWKGQRTLKISDLEVTSD---G 372 (540)
Q Consensus 303 wd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~---~ 372 (540)
|.-.+|+- ......|...|++++|.|. |-.|++++.||.|.+.+.++. ........|...+++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99887743 4455688999999999994 568899999999999998643 333445667778999999886 4
Q ss_pred -----------CEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcCCC----CEEEEEecCCeEEEEEecCCc
Q 009188 373 -----------KQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSRDN----KFLLVNLLNQEIHLWNIEGEV 433 (540)
Q Consensus 373 -----------~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~i~d~~~~~ 433 (540)
+.|++|+.|..|++|+..... ..+..|..-++.++|.|.- .++++++.||++.||..+...
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 679999999999999998854 4467899999999999954 689999999999999887442
Q ss_pred eeee--EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 434 KLVA--KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 434 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
..-+ .+.......+. ..++..|++|+.++.|+.|.+|.-.
T Consensus 245 e~wk~tll~~f~~~~w~---vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWR---VSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcccccccccCCcceEE---EEEeccccEEEEecCCcEEEEEEeC
Confidence 2222 12222233333 3348899999999999999999643
No 99
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=6.3e-25 Score=211.85 Aligned_cols=299 Identities=16% Similarity=0.249 Sum_probs=237.2
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCe-EEEeeCCC
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQ-LLTCGVEE 298 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg 298 (540)
..+.+.+++++.+.|+++.=+|-=..+|.|..+|+|.|+++..+ +.+.+++...+.|++++|..||+. +++|+..|
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSFrtDG~p~las~~~~G 267 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNG 267 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEeccCCCeeEEeccCCc
Confidence 46789999999999999999998889999999999999999877 566677655699999999999975 55566679
Q ss_pred cEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC----ceEEEeeccccceEEEEEEc-cCC
Q 009188 299 AVRRWDVSSGNCLHVYE-KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG----KELECWKGQRTLKISDLEVT-SDG 372 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~-~~~ 372 (540)
.+.+||++..+...... .|.+.+....|.|....+++++.|..+++|=.++ ..+.+...+|..+..++.|. .+|
T Consensus 268 ~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 268 DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred eEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 99999999988877666 7778999999999999999999999888875542 23445566677777777776 556
Q ss_pred CEEEEEecCCeEEE-----------------------------------------------------------------E
Q 009188 373 KQIITMCKESALLL-----------------------------------------------------------------L 387 (540)
Q Consensus 373 ~~l~~~~~d~~i~~-----------------------------------------------------------------~ 387 (540)
..+.+++.|++++. |
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence 66666666654443 3
Q ss_pred ECCCce--EEEeec------CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe---eCCcCCeeEEEeeeccC
Q 009188 388 DREAKV--ERYIEE------DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY---KGHKRSRFVIRSCFGGL 456 (540)
Q Consensus 388 d~~~~~--~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~~ 456 (540)
+.+++. .....+ ...+++++.++.|++.+.|+..|.|.+|+++++ .....| ..|..++..+.+ ..
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~~~V~gla~---D~ 503 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-IHRKSFGDSPAHKGEVTGLAV---DG 503 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-eeecccccCccccCceeEEEe---cC
Confidence 333322 111112 256889999999999999999999999999987 555666 467777665544 45
Q ss_pred CCcEEEEeeCCCcEEEEECCCCc-----------------------------------------eeEeecCCCCCeEEEE
Q 009188 457 EQAFIASGSEDSQVYIWHRASCD-----------------------------------------LIGALPGHSGAVNCVS 495 (540)
Q Consensus 457 ~~~~l~s~s~dg~i~iwd~~~~~-----------------------------------------~~~~~~~h~~~v~~l~ 495 (540)
-++.+++++.+|.+.+||..+.. .++.+.||.+.|++++
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT 583 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE
Confidence 66789999999999999977543 2334568999999999
Q ss_pred eCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 496 WNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 496 ~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
|||||. .|++++.|++|++||+.++.++-.
T Consensus 584 FS~Dgr-WlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 584 FSPDGR-WLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eCCCCc-EEEEeecCCcEEEEeccCcceeee
Confidence 999996 999999999999999999998754
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.6e-26 Score=195.65 Aligned_cols=289 Identities=19% Similarity=0.259 Sum_probs=210.6
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCce--EEEEEecCCCCCeEEEEECcCCCeEEEee-CCCc
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGV--TLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VEEA 299 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~ 299 (540)
.+..|+||.+.|++++|+.||++|||++.|++|+||++..-... +.++ ..-.-+..+.+.|.||-+-++... ...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh-ccccCCCceEEEECCCcceEEEEEccCCE
Confidence 35678999999999999999999999999999999998742110 0110 011123568899999987666554 4556
Q ss_pred EEEEECCC---CeEEE---------EeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEE
Q 009188 300 VRRWDVSS---GNCLH---------VYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLE 367 (540)
Q Consensus 300 i~iwd~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 367 (540)
+++|.+.. |.... .-..|...+..+-...++.+|++++.|..|.+|++++..+... ......-...+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i-dtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSI-DTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeee-cccccccccee
Confidence 99997643 22111 1123455677777777889999999999999999995554443 33334667789
Q ss_pred EccCCCEEEEEecCCeEEEEECCCc----------eEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC-----
Q 009188 368 VTSDGKQIITMCKESALLLLDREAK----------VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE----- 432 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~~i~~~d~~~~----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----- 432 (540)
++|+|+++++++-.-.|++|.+--. .....+|...|..++|+++...+++.+.||.+++||+.-.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 9999999999999999999985321 1556789999999999999999999999999999998632
Q ss_pred -ceeeeEee--CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec-CCCCCeEEEEeCCCCCCEEEEEe
Q 009188 433 -VKLVAKYK--GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP-GHSGAVNCVSWNPANPHMLASAS 508 (540)
Q Consensus 433 -~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~ 508 (540)
.+.++... .+......++.. .+|+|..||.+. ...+.+|..++|+...++. .|...|.+++|+++|. +++|+|
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~-lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~-~~atcG 392 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLE-LSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK-YIATCG 392 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEE-eCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCc-EEeeec
Confidence 12222221 122222223333 388998887654 4579999999998876665 5999999999999996 888887
Q ss_pred CCCcEEEec
Q 009188 509 DDRTIRIWG 517 (540)
Q Consensus 509 ~Dg~i~iw~ 517 (540)
+ ..+++..
T Consensus 393 d-r~vrv~~ 400 (420)
T KOG2096|consen 393 D-RYVRVIR 400 (420)
T ss_pred c-eeeeeec
Confidence 4 5777765
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.4e-24 Score=206.16 Aligned_cols=275 Identities=12% Similarity=0.149 Sum_probs=202.3
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeE-EEeeCCCcEEEEECCCCeEEEEeecCCCcE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL-LTCGVEEAVRRWDVSSGNCLHVYEKAGLGL 321 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 321 (540)
+..+++++.|+.+++||..++ .....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+. .+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~---~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL---EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC---ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-Cc
Confidence 357889999999999998765 3445555554 46789999999876 566788999999999998887776544 35
Q ss_pred EEEEEecCCCEEEEE-eCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCC-eEEEEECCCceE-EEee
Q 009188 322 VSCGWHPDRKWIFSG-ANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES-ALLLLDREAKVE-RYIE 398 (540)
Q Consensus 322 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-~i~~~d~~~~~~-~~~~ 398 (540)
..++|+|+++.++++ +.++.|++||+.+.......... ..+.+++++|+|..++++..++ .+.+||..+... ....
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 678999999877655 56889999999876554433322 2467899999999999888765 467789877652 2233
Q ss_pred cCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeCCc-----CCeeEEEeeeccCCCcEEEE-eeCCCcEE
Q 009188 399 EDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKGHK-----RSRFVIRSCFGGLEQAFIAS-GSEDSQVY 471 (540)
Q Consensus 399 ~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~s-~s~dg~i~ 471 (540)
....+.+++|+|+++++++++ .++.|++||+.+. +....+..+. ......... +++++++++. .+.++.+.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIK-LTKDGKTAFVALGPANRVA 232 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceE-ECCCCCEEEEEcCCCCeEE
Confidence 445667899999999886554 5899999999876 4444443221 111112222 3788887544 45567899
Q ss_pred EEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEE-EeCCCcEEEecCCCCCccccc
Q 009188 472 IWHRASCDLIGALPGHSGAVNCVSWNPANPHMLAS-ASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 472 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
+||..+++.+..+. +...+.+++|+|++. .|++ ++.+|.|++||+.++++....
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~-~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTPDEK-YLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECCCCC-EEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 99999988876654 456799999999997 5555 467999999999999976553
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.2e-26 Score=203.96 Aligned_cols=283 Identities=16% Similarity=0.238 Sum_probs=228.6
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCC-eEEEeeCCCcEEEEECCCCe
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ-QLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 309 (540)
.++|+++.|+|....|++|+.||+++||.++.... ..+..+.--..+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 47899999999999999999999999999984333 34555556678999999999998 88999999999999999887
Q ss_pred EEEEee--cC-CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEE
Q 009188 310 CLHVYE--KA-GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLL 386 (540)
Q Consensus 310 ~~~~~~--~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~ 386 (540)
..+.-. ++ ...+.....++++++|+..+..|.|.+....++++....... +.+.+++|+.|++.+++.+.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcEEEEEcCCceEEE
Confidence 544322 22 235667788999999999999999999999888776655544 48999999999999999999999999
Q ss_pred EECCCce-EEEeecCCce--eEEEEcCCCCEEEEEecCCeEEEEEecC-----CceeeeEeeCCcCCeeEEEeeeccCCC
Q 009188 387 LDREAKV-ERYIEEDQTI--TSFSLSRDNKFLLVNLLNQEIHLWNIEG-----EVKLVAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 387 ~d~~~~~-~~~~~~~~~i--~~~~~s~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
||++... .......+.+ +++|.++++.++++|+..|.|.|||.++ ..+++..+..-. +.|....++++.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDA 447 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcch
Confidence 9999876 3333334444 6788889999999999999999999653 234454444433 345666669999
Q ss_pred cEEEEeeC--CCcEEEEECCCCceeEeecCC---CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 459 AFIASGSE--DSQVYIWHRASCDLIGALPGH---SGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 459 ~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.+||.+|. +..+++-.+.+......++.. -+.|+|++|+|.+. ++|.|..+|.|.+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG-~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG-YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence 99988875 568999999888877766643 35789999999886 99999999999999875
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.8e-25 Score=180.40 Aligned_cols=255 Identities=17% Similarity=0.250 Sum_probs=203.8
Q ss_pred CCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC--ceEEEEEecCCCCCeEEEEECc----CCCeE
Q 009188 218 QIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG--GVTLKHKLSGHQKPVSCVSWSS----DDQQL 291 (540)
Q Consensus 218 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~----~~~~l 291 (540)
.+|.-..+.-+.|.+.|+|.+|||+|+++|+|+.|.+|++.-.+... ..-....+..|.+.|..++|.. .+.+|
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence 33445566778899999999999999999999999999998765331 1122345678999999999965 35677
Q ss_pred EEee-CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec-------cccceE
Q 009188 292 LTCG-VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG-------QRTLKI 363 (540)
Q Consensus 292 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v 363 (540)
++++ .|..|.+-|..+|+..+.+.+|.+-|.++ ++-++-.|++|+.|.+|++||++-........ ...+.|
T Consensus 156 ~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred EecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 7766 46778888999999999999999998876 33468899999999999999997655444322 123579
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc---eeeeE
Q 009188 364 SDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV---KLVAK 438 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~ 438 (540)
.++++.|.|+.+++|-.|....+||++.+. ..+..|...|.++.|+|...|+++++.|..|++-|+.+.. -++..
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v 314 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV 314 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEE
Confidence 999999999999999999999999999877 7778899999999999999999999999999999998642 23344
Q ss_pred eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 439 YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 439 ~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
...|......++ |.|..--+++.+.|.++.+|-+.
T Consensus 315 v~ehkdk~i~~r---wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 315 VAEHKDKAIQCR---WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEeccCceEEEE---ecCccceeeeccCcceEEEeccC
Confidence 455666543333 36777778899999999999754
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=198.41 Aligned_cols=254 Identities=15% Similarity=0.241 Sum_probs=202.9
Q ss_pred EEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC------------C------eEEEEeecCCCcEEEEEEecCCC
Q 009188 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS------------G------NCLHVYEKAGLGLVSCGWHPDRK 331 (540)
Q Consensus 270 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 331 (540)
..+..|..++.+.+|++||.++++|+.|.+|+|.|++. | -.++++-.|..+|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34678999999999999999999999999999999871 1 24677778999999999999999
Q ss_pred EEEEEeCCCcEEEEecCCceEEEe--eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEE-----EeecCCcee
Q 009188 332 WIFSGANDKSICMWELGGKELECW--KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVER-----YIEEDQTIT 404 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~i~ 404 (540)
.|++|+.|++|+++|+.......- ......+|.++.|+|.|.++++|....++++||+.+.+.. ...|.+.|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 999999999999999964322211 1122348999999999999999999999999999997632 235788999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee
Q 009188 405 SFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 405 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 484 (540)
++.+++.++..++++.||.|++||--++ +++.++....+... +....+..+|+|+.+.+.|..+++|.+.+++++..+
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gse-vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSE-VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCce-eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999999997766 66766654333333 334445899999999999999999999999999988
Q ss_pred cCCC--C---CeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 485 PGHS--G---AVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 485 ~~h~--~---~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
.|-. + .-+...|+....++|.---..+.+.-||-+++....
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 7631 1 123455777776445444456778999998876544
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.8e-26 Score=210.00 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=233.8
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec--CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS--GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
.|..-|.++.+|...++++||+. |.|+|||+...+.......+. ...+.|+++..+|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888999999999999999986 789999997544333333332 245679999999999999999999999999997
Q ss_pred CCeE--EEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeE
Q 009188 307 SGNC--LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 307 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
.... ...+.........++.+||.+..++++.||.|.|||+.+..+...+..|...+.||.+++||..|.+|+-|++|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 6543 33343444566778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE
Q 009188 385 LLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 385 ~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
+.||+++.. .........|.++..+|.+.++++|..++.+.+...... ....+..|...+. ...+.+.|+++++
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyqlhlheScVL---SlKFa~cGkwfvS 650 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQLHLHESCVL---SLKFAYCGKWFVS 650 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc--cceeecccccEEE---EEEecccCceeee
Confidence 999999876 444456788999999999999999999999988887654 2223334444333 3334889999999
Q ss_pred eeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 464 GSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 464 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.+.|+.+..|...-|..+...+ ..+.|.+..++.++. +++||+.|....||.+
T Consensus 651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeecc-ccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence 9999999999999999888877 568899999999885 9999999998888765
No 106
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=214.36 Aligned_cols=286 Identities=20% Similarity=0.334 Sum_probs=221.7
Q ss_pred EEEec---CCCeEEEEeCCCcEEEEEeecCCc---eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 237 LQFSH---NGKYLASSSNDRSAIIWEVDLNGG---VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 237 ~~~sp---~g~~l~tg~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
..|++ ....||.+..||.|.++|.....- .........|.+.|..+.|.|....|++++.|.++++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 44544 345789999999999999763211 112345678999999999999778999999999999999999988
Q ss_pred EEE--eecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEE-------ee--------------------cccc
Q 009188 311 LHV--YEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELEC-------WK--------------------GQRT 360 (540)
Q Consensus 311 ~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~--------------------~~~~ 360 (540)
+.. +.+|...|.+++|.| +...|++|+.||.|.|||++-..... .. ..+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 776 889999999999999 45578899999999999996322100 00 0111
Q ss_pred ceEEE---EEEccCCCEEEEEec-CCeEEEEECCCceEEE----------eec---CCceeEEEEcCCCCEEEEEecCCe
Q 009188 361 LKISD---LEVTSDGKQIITMCK-ESALLLLDREAKVERY----------IEE---DQTITSFSLSRDNKFLLVNLLNQE 423 (540)
Q Consensus 361 ~~v~~---i~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~----------~~~---~~~i~~~~~s~~~~~l~~~~~dg~ 423 (540)
..|.+ +.+..|...|++++. |+.|++||++...... ..+ ...+.++..+..|.++++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 22333 445567788888876 9999999998755211 112 345778888888999999999999
Q ss_pred EEEEEecCC-ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc-eeEeecCCCCCeEEEEeCCCCC
Q 009188 424 IHLWNIEGE-VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD-LIGALPGHSGAVNCVSWNPANP 501 (540)
Q Consensus 424 i~i~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~ 501 (540)
|++|++.+. ..++..+.++....+.+..+. ++++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|...
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 999999764 245666777777666676665 8999999999999999999998865 4567889999999999988654
Q ss_pred CEEEEEeCCCcEEEecCCCCCc
Q 009188 502 HMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 502 ~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
.-++|+++|-.++||++.++-.
T Consensus 374 t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred CCceeeccCcceEEEeccCchh
Confidence 4688899999999999976543
No 107
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.7e-25 Score=186.94 Aligned_cols=235 Identities=14% Similarity=0.274 Sum_probs=204.3
Q ss_pred EecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc
Q 009188 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK 350 (540)
Q Consensus 271 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 350 (540)
.+++|..+++.+.++.+|.+|++|+.|.+..||-..+|+.+.++.+|.+.|+|+..+.+.+.+++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999899999999999999999999999999999999999999999887
Q ss_pred eEEEeeccccceEEEEEEccCCCEEEEEec-----CCeEEEEECCCc---------eEEEeecCCceeEEEEcCCCCEEE
Q 009188 351 ELECWKGQRTLKISDLEVTSDGKQIITMCK-----ESALLLLDREAK---------VERYIEEDQTITSFSLSRDNKFLL 416 (540)
Q Consensus 351 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----d~~i~~~d~~~~---------~~~~~~~~~~i~~~~~s~~~~~l~ 416 (540)
+........ .+|..+.|+++|++++.... .+.|.++|++.. ......+...++++-|.|-+++|+
T Consensus 85 k~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 766554443 38999999999999887764 467999998732 245556778999999999999999
Q ss_pred EEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEe
Q 009188 417 VNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSW 496 (540)
Q Consensus 417 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 496 (540)
+|..+|.|.+||.+++...+.....|...+..+ ..+++..++++++.|.+-++||..+.+.++++. -..+|++.++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~---q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDL---QFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccc---cccCCcceEEecccCccceeeeccceeeEEEee-ecccccceec
Confidence 999999999999999878888878887754443 448999999999999999999999999999998 5689999999
Q ss_pred CCCCCCEEEEEeCC
Q 009188 497 NPANPHMLASASDD 510 (540)
Q Consensus 497 ~~~~~~~l~s~~~D 510 (540)
+|....+++-||.+
T Consensus 240 sP~~d~VilgGGqe 253 (327)
T KOG0643|consen 240 SPLLDHVILGGGQE 253 (327)
T ss_pred ccccceEEecCCce
Confidence 99876555555543
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=216.80 Aligned_cols=323 Identities=15% Similarity=0.221 Sum_probs=247.0
Q ss_pred hcccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecC
Q 009188 195 ACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG 274 (540)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (540)
+.+|+++.|+.+.+|....- ...+.......++.|.+.|+.++...+|+.|+++|.|-+|++|+...+. .-+..++..
T Consensus 38 ryLfTgGRDg~i~~W~~~~d-~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~ 115 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQD-SNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRT 115 (735)
T ss_pred ceEEecCCCceEEEeccccc-cCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhc
Confidence 36799999999999975432 1112223588999999999999999999999999999999999988654 346678889
Q ss_pred CCCCeEEEEE-CcCCCeEEEeeCCCcEEEEECCCCe--EEEE--------ee-cCCCcEEEEEEecCCCEEEEEeCCCcE
Q 009188 275 HQKPVSCVSW-SSDDQQLLTCGVEEAVRRWDVSSGN--CLHV--------YE-KAGLGLVSCGWHPDRKWIFSGANDKSI 342 (540)
Q Consensus 275 h~~~v~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 342 (540)
|.+.|.|++. .++...+|+||-|+.|.+||++++. .+.. +. ++..+|.+++.++.|..|++|+..+.+
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 9999999999 7888999999999999999999872 2222 22 677899999999999999999999999
Q ss_pred EEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEec
Q 009188 343 CMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
++||.+++.......+|...|+++..++||+.+++++.||+|++||+.... ..+..|...+.++..+|+-..+.+|+.
T Consensus 196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred EEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC
Confidence 999999877766666888899999999999999999999999999999876 667788888999999999999999999
Q ss_pred CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-------CceeEeecC-------
Q 009188 421 NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-------CDLIGALPG------- 486 (540)
Q Consensus 421 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~------- 486 (540)
||.|..=|+++..+....++.. .++..+.. ....+-+.+++.|+.|+-|-..- +.+......
T Consensus 276 d~~i~~Tdl~n~~~~tlick~d-aPv~~l~~---~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~ 351 (735)
T KOG0308|consen 276 DGNIYRTDLRNPAKSTLICKED-APVLKLHL---HEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCD 351 (735)
T ss_pred CCcEEecccCCchhheEeecCC-Cchhhhhh---ccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcccc
Confidence 9999999998753433333321 11111111 22223346778888888886432 111110000
Q ss_pred ----C------CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 487 ----H------SGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 487 ----h------~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
| ..+|..-+.-.+. +.++|-...|.+.+||+-.....
T Consensus 352 ~~~tp~~vi~Gg~ai~k~~mL~dk-RhVlTkDa~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 352 LTNTPDSVIPGGAAIKKHAMLNDK-RHVLTKDAKGNVALWDILACVKV 398 (735)
T ss_pred ccCCCceeccCchhhhhhhhhcCc-ceEeeecCCCCEEEEEeeeeeeh
Confidence 0 0122222333333 58999999999999998765544
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.9e-25 Score=213.19 Aligned_cols=278 Identities=15% Similarity=0.230 Sum_probs=223.2
Q ss_pred ccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC
Q 009188 228 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS 307 (540)
Q Consensus 228 ~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 307 (540)
.+|+.+-+.++|.|+|.+|++++.||.|++|+..... ....++..+...|.+++.. +.+|++|+.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 4699999999999999999999999999999876441 1112233377778777764 55999999999999999999
Q ss_pred CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEE
Q 009188 308 GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLL 387 (540)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~ 387 (540)
++.-..+....-++.+++++.+|++++.|+.|-.|++.++...........|..+|.++.++|.+++|++.+.||.|++|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 88777777778899999999999999999999999999998877777888888999999999999999999999999999
Q ss_pred ECCCceEEEe----------ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCC
Q 009188 388 DREAKVERYI----------EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE 457 (540)
Q Consensus 388 d~~~~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 457 (540)
|+.++..... .....+..++|+|+|..+++...|+.|.+|+..+. .....+........ +..+.|+|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~-~~~~~wsPn 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSK-FSDLQWSPN 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccc-eEEEEEcCC
Confidence 9988662111 12445678999999989999999999999998877 55555554333322 556667999
Q ss_pred CcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 458 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
|.|||+++.||.|.|||..+... ......|.+++|.|+.+ .+-....-|...+|
T Consensus 244 G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n-~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN-AITLITALGTLGVS 297 (933)
T ss_pred CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC-eeEEEeeccccccC
Confidence 99999999999999999988332 22346899999999986 44443444443333
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2e-25 Score=201.47 Aligned_cols=245 Identities=16% Similarity=0.294 Sum_probs=209.7
Q ss_pred EEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE-Ee-----------------ecCCCcEEEEEEecCCC
Q 009188 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH-VY-----------------EKAGLGLVSCGWHPDRK 331 (540)
Q Consensus 270 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~-----------------~~~~~~v~~~~~~~~~~ 331 (540)
..+..|.-+|.+++++|++.+.++++.+++|.-|++.+|+... .+ +.|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3456799999999999999999999999999999999886431 11 25667899999999999
Q ss_pred EEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEc
Q 009188 332 WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLS 409 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s 409 (540)
+|++|+.|..|.||+.++.+.......|...|.+++|-.....+++++.|..+++|++.... ..+++|...|.++...
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999988888888888999999999999999999999999999998765 7788999999999999
Q ss_pred CCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec-CC-
Q 009188 410 RDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP-GH- 487 (540)
Q Consensus 410 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h- 487 (540)
..++.+.+|+.|+++++|++... ....|.++....-++.+ -+...+++|+.||.|.+|++.+.+++.+.. +|
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~----In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAF----INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred cccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEE----ecccceeeccCCceEEEeeecccCceeEeecccc
Confidence 99999999999999999999553 44556677665444332 245679999999999999999999887654 12
Q ss_pred ----------CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 488 ----------SGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 488 ----------~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
...|++++..|... +++||+.+|.|++|.+.++
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence 22799999999775 9999999999999999987
No 111
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7e-26 Score=206.05 Aligned_cols=253 Identities=12% Similarity=0.191 Sum_probs=207.0
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW 355 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 355 (540)
.+.|.+++|+|...+=++....-.+.+|+..+....+.+......+.++.|-.||+.+++|+..|.|++||+++..+...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 46799999999665433333455699999988888888888888999999999999999999999999999888777777
Q ss_pred eccccceEEEEEEccCCC-EEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecC
Q 009188 356 KGQRTLKISDLEVTSDGK-QIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~-~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~ 431 (540)
...|..++..+.|+|++. .+++|+.|+.+++||+.+.. .....|...|.+.+|+|.. ..+++|+.||.|++||++.
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 788888999999998765 56677788889999999987 3556799999999999964 5889999999999999998
Q ss_pred CceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC-ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCC
Q 009188 432 EVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-DLIGALPGHSGAVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 432 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 510 (540)
....+..+. |..++..+ ++ -|.|..+++++. ..|++||+.+| +.+.....|...|+|+++..++. .|+|+|-|
T Consensus 186 ~~~~v~eln-hg~pVe~v--l~-lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD 259 (487)
T KOG0310|consen 186 LTSRVVELN-HGCPVESV--LA-LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLD 259 (487)
T ss_pred CCceeEEec-CCCceeeE--EE-cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCc-eEeecccc
Confidence 754444443 44443332 23 567788888775 47999999855 55566666999999999999885 89999999
Q ss_pred CcEEEecCCCCCccccccCCCceE
Q 009188 511 RTIRIWGLKDLNVKRKDCHSNGVH 534 (540)
Q Consensus 511 g~i~iw~~~~~~~~~~~~~~~~v~ 534 (540)
+.|++||+.+.++......+++|.
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~~pvL 283 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYPGPVL 283 (487)
T ss_pred cceEEEEccceEEEEeeeccccee
Confidence 999999999999998888888773
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=9e-26 Score=206.25 Aligned_cols=273 Identities=22% Similarity=0.324 Sum_probs=204.6
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEE-------
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTL------- 268 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~------- 268 (540)
.+++++.|..+.+|+...........+.++..++ ..|.++.|++.|..|++.+....++|+|-+.....++
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred eeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 4567888999999987655433333333444444 4789999999999998888888999999763211111
Q ss_pred --EEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCCCe-EEEEee-----cCCCcEEEEEEecCCCEEEEEeCC
Q 009188 269 --KHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGN-CLHVYE-----KAGLGLVSCGWHPDRKWIFSGAND 339 (540)
Q Consensus 269 --~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d 339 (540)
....++|...++|.+|+|+. ..+++++.||++++||+...+ ....++ +..-+++.++|++|++.||+|+.|
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D 338 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD 338 (641)
T ss_pred hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence 12235899999999999965 688999999999999998653 333333 224578999999999999999999
Q ss_pred CcEEEEecCCce---EEEeeccccc--eEEEEEEccCCCEEEEEecCCeEEEEECCCceEEE-----eecCCceeEEEEc
Q 009188 340 KSICMWELGGKE---LECWKGQRTL--KISDLEVTSDGKQIITMCKESALLLLDREAKVERY-----IEEDQTITSFSLS 409 (540)
Q Consensus 340 g~i~iwd~~~~~---~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-----~~~~~~i~~~~~s 409 (540)
|.|.+|+..+.. .......|.. .|+++.|++||++|++-+.|+++++||++...... +....+-+.++||
T Consensus 339 GSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 339 GSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred CceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 999999985432 2334445544 89999999999999999999999999999865222 2234566889999
Q ss_pred CCCCEEEEEec------CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 410 RDNKFLLVNLL------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 410 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
|+.++|++|+. .|.+.+||..+. ..+.++.-... .+++ |.|+|.-+.|..|+.||.+++|=
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~ki~i~~a--Svv~-~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYKIDISTA--SVVR-CLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEeccce-eeEEEecCCCc--eEEE-EeecchhhheeeecCCCceEEEE
Confidence 99999999864 567999998776 45555544432 3344 44588888899999999999884
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=7e-25 Score=203.97 Aligned_cols=291 Identities=19% Similarity=0.306 Sum_probs=228.8
Q ss_pred CCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCC--eEEEe
Q 009188 217 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ--QLLTC 294 (540)
Q Consensus 217 ~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~ 294 (540)
..+|..+-..+.||++.|.|+...|.|.+||+|+.||+|+||.+.++ .++++.. ..+.|.||+|+|.+. .||++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 56778888899999999999999999999999999999999999877 4555543 456899999999764 34433
Q ss_pred eCCCcEEEEECCCC-------------------------------------eEEEEeecCCCcEEEEEEecCCCEEEEEe
Q 009188 295 GVEEAVRRWDVSSG-------------------------------------NCLHVYEKAGLGLVSCGWHPDRKWIFSGA 337 (540)
Q Consensus 295 ~~dg~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 337 (540)
- ...+.|-+..-| .-++..-.|...|..+.|+..|.+|++..
T Consensus 462 ~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 V-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred e-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 2 222333332111 01223346777899999999999999887
Q ss_pred CCC---cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCC
Q 009188 338 NDK---SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDN 412 (540)
Q Consensus 338 ~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~ 412 (540)
.++ .|.|+++.......-+....+.+.++.|+|...++++++ ...|++||+.... .........|.+++++|.|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 654 799999976655555555556899999999998888865 4579999998765 4455667789999999999
Q ss_pred CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC-------C--CceeEe
Q 009188 413 KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA-------S--CDLIGA 483 (540)
Q Consensus 413 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~-------~--~~~~~~ 483 (540)
..|++++.|+.+..||+.-..++.+++..|...+.. +.+++.-.++++|+.||++.|+.-. + --+++.
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~---Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS---VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh---hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 999999999999999998877899999988886443 4447778899999999999998522 1 124578
Q ss_pred ecCCCCC----eEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 484 LPGHSGA----VNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 484 ~~~h~~~----v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
+++|... |.++.|+|..+ .|+|+|.||+|++|-
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLFT 733 (733)
T ss_pred ccCceeecccceEeecccCCCc-eEEecCCCceEEeeC
Confidence 8888765 89999999998 999999999999983
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=5.4e-25 Score=187.63 Aligned_cols=285 Identities=15% Similarity=0.269 Sum_probs=226.3
Q ss_pred ccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCceE-----EEE-------EecCCCCCeEEEEECc-CCCeEEE
Q 009188 228 QGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVT-----LKH-------KLSGHQKPVSCVSWSS-DDQQLLT 293 (540)
Q Consensus 228 ~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~-----~~~-------~~~~h~~~v~~l~~s~-~~~~l~s 293 (540)
.-|.+.|+++...+ .|+|+++|+.||.|.+||+......+ ... --.+|.-.|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34889999999998 68999999999999999997543111 111 1236778899999999 5668888
Q ss_pred eeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEec---CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc
Q 009188 294 CGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHP---DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 370 (540)
++.|.+++|||..+-+....|+. .+.|.+-+|+| ....+++|..+-.|++.|+.++........|...|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 99999999999999988887754 45788888888 344677888888999999999999999999999999999999
Q ss_pred CCCE-EEEEecCCeEEEEECCCce-----------------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 371 DGKQ-IITMCKESALLLLDREAKV-----------------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 371 ~~~~-l~~~~~d~~i~~~d~~~~~-----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
...+ |++|+.||.+++||++... .....|.+.+++++|+.++.++++++.|..+++|+...+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 8876 5688899999999987631 113356788999999999999999999999999999876
Q ss_pred ceeeeEeeCC--c---CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 433 VKLVAKYKGH--K---RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 433 ~~~~~~~~~~--~---~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
......+... . .....+. +.+...++---.++.+.++++-.+..+..+.+|-..|.+.++.|+-. ...++
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq-~~~tg 353 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE-QCFTG 353 (397)
T ss_pred cccccccccccccccccceEEEe----ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh-hhhcc
Confidence 4444433211 1 1111122 22333344444568999999999999999999999999999999875 78999
Q ss_pred eCCCcEEEecC
Q 009188 508 SDDRTIRIWGL 518 (540)
Q Consensus 508 ~~Dg~i~iw~~ 518 (540)
..|+.|..|-+
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999988
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.3e-24 Score=186.81 Aligned_cols=258 Identities=15% Similarity=0.236 Sum_probs=200.7
Q ss_pred CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEE
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELE 353 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 353 (540)
...+.|.++.|+|.+..|++++.||++++||+........+ .|+.++.+++|.+ ...+++|+.||.|+.+|++++...
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 34678999999999999999999999999999888666665 6788999999987 458999999999999999887655
Q ss_pred EeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 354 CWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 354 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
.. ..|...++++.+++....+++|+.|++|++||.+... .........|.++.. .++.|++|+.+..+.+||+++.
T Consensus 89 ~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred ee-ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 44 4455699999999999999999999999999999754 333344456666655 6788999999999999999976
Q ss_pred ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC----ceeEeecCCC---------CCeEEEEeCCC
Q 009188 433 VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC----DLIGALPGHS---------GAVNCVSWNPA 499 (540)
Q Consensus 433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~l~~~~~ 499 (540)
....+. ....-.+.+++...-|++.=.++++-||.|.+=.+... +.-..|+.|. -+|++++|+|-
T Consensus 166 ~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 166 DEPFQR--RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cchhhh--ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 444322 12233445555555667777889999999988666554 3345566664 27999999998
Q ss_pred CCCEEEEEeCCCcEEEecCCCCCcccc-ccCCCce---EeccCC
Q 009188 500 NPHMLASASDDRTIRIWGLKDLNVKRK-DCHSNGV---HYCNGG 539 (540)
Q Consensus 500 ~~~~l~s~~~Dg~i~iw~~~~~~~~~~-~~~~~~v---~~c~~g 539 (540)
.. .|+|||.||.|.+||+.+.+.+.. ...+..| .||..|
T Consensus 244 ~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 244 HG-TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG 286 (323)
T ss_pred cc-eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC
Confidence 64 899999999999999998876654 2233433 677666
No 116
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=5.5e-24 Score=194.18 Aligned_cols=283 Identities=18% Similarity=0.292 Sum_probs=215.1
Q ss_pred EEecccC-cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 224 LQILQGH-TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 224 ~~~l~~h-~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
...++++ +.-|.|++|.++|. ++||.++|.|.||+.... ...+....|.+.|.+++...+|.+|- |+.|..|..
T Consensus 238 ~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~ 312 (626)
T KOG2106|consen 238 QGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN---RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIIL 312 (626)
T ss_pred eeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---eEEeEeeecCCceEEEEEecCccEee-cCccceEEe
Confidence 3444444 36799999999996 899999999999997533 34444449999999999999886555 999999999
Q ss_pred EECCCCe----------------------------------------EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcE
Q 009188 303 WDVSSGN----------------------------------------CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSI 342 (540)
Q Consensus 303 wd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 342 (540)
||-.-.+ ......+|....+.++.+|+.+++++++.|+.+
T Consensus 313 Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 313 WDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHV 392 (626)
T ss_pred ccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceE
Confidence 9832000 001223677788999999999999999999999
Q ss_pred EEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecC
Q 009188 343 CMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
++|+ .. ...+......+..++.|+|.| .++.|+..|...+.|.++.. ........+++.+.|+|+|.+|++|+.|
T Consensus 393 ~lW~--~~-k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 393 RLWN--DH-KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred EEcc--CC-ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC
Confidence 9999 22 223333344588999999999 99999999999999999966 4444458899999999999999999999
Q ss_pred CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC-----------------------
Q 009188 422 QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC----------------------- 478 (540)
Q Consensus 422 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------------------- 478 (540)
+.|++|.+..+...+.....+.. ..+....|++|++++.+-+-|-.|-.|.....
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVF 546 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEe
Confidence 99999999877666666555444 34566666888888888888888888842211
Q ss_pred ----------------------------------------ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 479 ----------------------------------------DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 479 ----------------------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.+.+++.+|++.|++++|.-+.. .+++.+.|.+|..|++
T Consensus 547 g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~-~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 547 GGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS-HLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc-eEEecCCCceEEEEEe
Confidence 12233446777788888877664 6666668888888875
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.4e-25 Score=187.94 Aligned_cols=258 Identities=17% Similarity=0.264 Sum_probs=195.2
Q ss_pred cCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCC-CeEE-EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC
Q 009188 273 SGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSS-GNCL-HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 273 ~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 349 (540)
....+.|.+|+||| ...+++++|.||+||+|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567899999999 555666889999999999987 3332 44557889999999999999999999999999999998
Q ss_pred ceEEEeeccccceEEEEEEccCCC--EEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009188 350 KELECWKGQRTLKISDLEVTSDGK--QIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHL 426 (540)
Q Consensus 350 ~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 426 (540)
++....- .|..+|..+.|-+... .|++|+.|.+|+.||.+... .........+.++.. ....++++..++.|.+
T Consensus 104 ~Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 104 GQVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAV 180 (347)
T ss_pred CCeeeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEE
Confidence 8665544 4556999999987665 89999999999999999765 444455555655544 4567889999999999
Q ss_pred EEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc--eeEeecCCCC---------CeEEEE
Q 009188 427 WNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD--LIGALPGHSG---------AVNCVS 495 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~---------~v~~l~ 495 (540)
|++++.....+..... -.+.+++...-.+....+.|+-+|.+.|..+..+. .-.+++.|.. .|++|+
T Consensus 181 ynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9998764444433332 22334433333455556999999999999988863 3355666652 578899
Q ss_pred eCCCCCCEEEEEeCCCcEEEecCCCCCcccc-ccCCCceEec
Q 009188 496 WNPANPHMLASASDDRTIRIWGLKDLNVKRK-DCHSNGVHYC 536 (540)
Q Consensus 496 ~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~-~~~~~~v~~c 536 (540)
|+|... .|+|+|.||++.+||-.....++. ..++..|.-|
T Consensus 259 FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc 299 (347)
T KOG0647|consen 259 FHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC 299 (347)
T ss_pred eecccc-eEEEecCCceEEEecchhhhhhhccCcCCCcccee
Confidence 999875 999999999999999887665554 4455555333
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6e-25 Score=189.16 Aligned_cols=258 Identities=19% Similarity=0.336 Sum_probs=213.0
Q ss_pred CCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEee------cC----------------------------
Q 009188 218 QIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD------LN---------------------------- 263 (540)
Q Consensus 218 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~------~~---------------------------- 263 (540)
.....++..+.||.+.|+|++|++.+.++++++.|++..||... .+
T Consensus 177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 34578899999999999999999999999999999999999731 00
Q ss_pred ---CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC
Q 009188 264 ---GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340 (540)
Q Consensus 264 ---~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 340 (540)
.-..++..+.+|.+.|.+..|...|+.+++++.|.+..+||+++|+.+..+.+|....+.++-+|..+++++.+.|.
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc
Confidence 00124556889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCC-ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEE
Q 009188 341 SICMWELGG-KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 341 ~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~ 417 (540)
+.++||++. -.....+.+|...|++..|..+. .+++|+.|.+|++||+++.. ...+....+++.++++..+..++.
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEe
Confidence 999999974 33445667788899999998764 58899999999999999876 566678899999999999999999
Q ss_pred EecCCeEEEEEecCCceeee----EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC
Q 009188 418 NLLNQEIHLWNIEGEVKLVA----KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 418 ~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 478 (540)
-..+..|++||+.+. .+.+ .-.+|..-+.+..+..-.|- .-|++++.|..+.-|.+...
T Consensus 416 PhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eehp~-cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEHPA-CNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCceEEEEecCCC-ccccCCcccccccceeeeeeeccccCcc-cccccccccceeeeeEeccc
Confidence 999999999999875 2222 23355554444333332333 34778999999999987654
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=213.12 Aligned_cols=290 Identities=14% Similarity=0.261 Sum_probs=221.3
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceE-EEEEecCCC---CCeEEEEECc-CCCeEEEeeCCCcEEEEECC
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT-LKHKLSGHQ---KPVSCVSWSS-DDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~h~---~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~ 306 (540)
.....|...++-..++.++. ..++||.++...... +...+.... -.+..+.|+. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34556677788888888876 468888876543221 111111111 2355677875 56899999999999999998
Q ss_pred C---CeEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC-CCEEEEEecC
Q 009188 307 S---GNCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD-GKQIITMCKE 381 (540)
Q Consensus 307 ~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d 381 (540)
. .+.+..|..|...+.++.|++ ...+|++|+.||+|++||++...-..........|+++.|+|. +..++++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 7 566778899999999999999 5668899999999999999877766666666778999999984 6789999999
Q ss_pred CeEEEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc-eeeeEeeCCcCCeeEEEeeeccCC
Q 009188 382 SALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV-KLVAKYKGHKRSRFVIRSCFGGLE 457 (540)
Q Consensus 382 ~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ 457 (540)
|.+.+||++... ..+..|.+++.++.|+|++.+|++|+.|+.|+|||+.+.. ....++. ...+ +..+.|-|.
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiap---v~rVkWRP~ 274 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAP---VGRVKWRPA 274 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecce---eeeeeeccC
Confidence 999999999866 6777899999999999999999999999999999998542 2222222 1222 333333444
Q ss_pred C-cEEEEeeC--CCcEEEEECCCCc-eeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 458 Q-AFIASGSE--DSQVYIWHRASCD-LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 458 ~-~~l~s~s~--dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
. ..|++++. |-.|+|||++..- +..++..|...++.++|...+...+.+++.||+|..-.++++.....
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pid 347 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPID 347 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccChhh
Confidence 3 55677664 7789999987654 56788899999999999876666899999999998887777655443
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.1e-25 Score=197.71 Aligned_cols=270 Identities=17% Similarity=0.274 Sum_probs=211.5
Q ss_pred EeCC-CcEEEEEeecCCceEEEEEecCC-CCCeEEEEECcCCCeEEEeeC-CCcEEEEECCCCeEEEEeecCCCcEEEEE
Q 009188 249 SSND-RSAIIWEVDLNGGVTLKHKLSGH-QKPVSCVSWSSDDQQLLTCGV-EEAVRRWDVSSGNCLHVYEKAGLGLVSCG 325 (540)
Q Consensus 249 g~~d-g~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 325 (540)
++.| .++.+||+.++. ...++++. ...-.++..- .+.+++++.. ...+.+|.+...........-+++|.+++
T Consensus 13 sS~d~~~~~~~dl~TGt---~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGT---SLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred cCCCCcceeEEecCCCc---eeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 3444 458999998773 33344443 1111112211 3457777654 44699999876655544445567899999
Q ss_pred EecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCc-----------eE
Q 009188 326 WHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK-----------VE 394 (540)
Q Consensus 326 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~-----------~~ 394 (540)
-+|+|.+++.|+..|.|++|.+.++.+......|-..|+++.|+.||.++++|+.||.|.+|.+..- ..
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 9999999999989999999999999998888888889999999999999999999999999986431 15
Q ss_pred EEeecCCceeEEEEcCCC--CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEE
Q 009188 395 RYIEEDQTITSFSLSRDN--KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYI 472 (540)
Q Consensus 395 ~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~i 472 (540)
.+..|.-+|+.+...+.| .++++++.|.++++||+..+ .++.++..... +.++..+|.+..+++|+++|.|.+
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp~s----i~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFPSS----IKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecCCc----ceeEEEcccccEEEecCCcceEEe
Confidence 566788899999888764 78999999999999999988 55555543332 445556899999999999999999
Q ss_pred EECCCC----------------ceeEeecCCCC--CeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 473 WHRASC----------------DLIGALPGHSG--AVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 473 wd~~~~----------------~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
.++... ..+..+.||.+ .|++++.+-||. +|++|+.||.|+|||+.+.++++...
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence 886542 23456778988 999999999996 99999999999999999999988765
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.3e-24 Score=181.97 Aligned_cols=263 Identities=20% Similarity=0.326 Sum_probs=196.3
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEee-cCCceEEEEEecCCCCCeEEEEECc--CCCeEEEeeCCCcEEEE
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD-LNGGVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iw 303 (540)
-.+|.+-|.|+.|.+.|+.+|||+.|++|+|||.+ ..+...+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35799999999999999999999999999999954 4456777788899999999999975 58999999999999999
Q ss_pred ECCC---------CeEEEEeecCCCcEEEEEEec--CCCEEEEEeCCCcEEEEecCC-ceEEEeeccccceEEEEEEccC
Q 009188 304 DVSS---------GNCLHVYEKAGLGLVSCGWHP--DRKWIFSGANDKSICMWELGG-KELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 304 d~~~---------~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
.=.. -....++......|+++.|.| -|-.+++++.||.++||+.-. ..+..+.-.+. +..+. +|-
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E--i~~~~-~pp 165 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE--IQNVI-DPP 165 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh--hhhcc-CCc
Confidence 6411 123455667788999999999 577899999999999999732 33333333221 11000 011
Q ss_pred CCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCC---CCEEEEEecC-----CeEEEEEecCCc---eeeeEee
Q 009188 372 GKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRD---NKFLLVNLLN-----QEIHLWNIEGEV---KLVAKYK 440 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~ 440 (540)
+ .+..+..|+.|+|. ..+|++|+.+ +.++||...... ..+..+.
T Consensus 166 ~-------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 166 G-------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred c-------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence 1 12345566777763 3667777755 478888876543 3345667
Q ss_pred CCcCCeeEEEeeec-cCCCcEEEEeeCCCcEEEEECCCC--------------------ceeEeecCCCCCeEEEEeCCC
Q 009188 441 GHKRSRFVIRSCFG-GLEQAFIASGSEDSQVYIWHRASC--------------------DLIGALPGHSGAVNCVSWNPA 499 (540)
Q Consensus 441 ~~~~~~~~i~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~--------------------~~~~~~~~h~~~v~~l~~~~~ 499 (540)
+|..+++.+.+... ...-.+||+++.|| |+||.+... +.+..+.+|.+.|..+.|+-.
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 88888777766542 12335789999999 999998731 234567789999999999999
Q ss_pred CCCEEEEEeCCCcEEEecCC
Q 009188 500 NPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 500 ~~~~l~s~~~Dg~i~iw~~~ 519 (540)
|. +|+|.|+||.||+|...
T Consensus 300 Gt-iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 300 GT-ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ee-EEeecCCCceeeehhhh
Confidence 96 99999999999999865
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=197.35 Aligned_cols=273 Identities=20% Similarity=0.255 Sum_probs=218.2
Q ss_pred CeEEEEeC-CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 009188 244 KYLASSSN-DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLV 322 (540)
Q Consensus 244 ~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 322 (540)
.|++++.. -..+.+|.+....... ...--.++|.+++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee
Confidence 56666644 3568899886432221 2223457899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEecC---------CceEEEeeccccceEEEEEEccC--CCEEEEEecCCeEEEEECCC
Q 009188 323 SCGWHPDRKWIFSGANDKSICMWELG---------GKELECWKGQRTLKISDLEVTSD--GKQIITMCKESALLLLDREA 391 (540)
Q Consensus 323 ~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~~d~~~ 391 (540)
|+.|+.||.+|++|+.||.|.+|++. +.........|.-+|+++...+. ..++++++.|.++++||+..
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 99999999999999999999999873 23344556678889999988775 47899999999999999999
Q ss_pred ce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc---------------eeeeEeeCCcCCeeEEEeeecc
Q 009188 392 KV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV---------------KLVAKYKGHKRSRFVIRSCFGG 455 (540)
Q Consensus 392 ~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~ 455 (540)
+. ......+..+.+++++|.++.+++|+.+|.|.+.++.... ..+..+.+|.+. ..+.+...+
T Consensus 208 g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-~~ITcLais 286 (476)
T KOG0646|consen 208 GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-SAITCLAIS 286 (476)
T ss_pred ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC-cceeEEEEe
Confidence 87 6666788999999999999999999999999998875431 234456677662 134444457
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 456 LEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 456 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
.||.+|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.+..+..-+....+-.|+++.
T Consensus 287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR 351 (476)
T ss_pred cCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence 89999999999999999999999999998877899999999775543344444455566666654
No 123
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4.7e-24 Score=202.24 Aligned_cols=302 Identities=17% Similarity=0.237 Sum_probs=237.6
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC-----------CCeEEEeeCCCcEEE
Q 009188 234 VWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD-----------DQQLLTCGVEEAVRR 302 (540)
Q Consensus 234 V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-----------~~~l~s~~~dg~i~i 302 (540)
..++.|+|....|...-.|..++|||+..-........+..|...|+.+.--|- ..-+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 457889999999999999999999999876666666777789999988876551 235899999999999
Q ss_pred EECCCCeEEEEee-------------------------------------cCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 009188 303 WDVSSGNCLHVYE-------------------------------------KAGLGLVSCGWHPDRKWIFSGANDKSICMW 345 (540)
Q Consensus 303 wd~~~~~~~~~~~-------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 345 (540)
||+..+..-..+. .....+.+++.+|+|++|++|...|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9997632111100 123478999999999999999999999999
Q ss_pred ecCCceEEEeeccccceEEEEEEccC---CCEEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCCC--CEEEE
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSD---GKQIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRDN--KFLLV 417 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~--~~l~~ 417 (540)
++..-....+...|...|.|+.++.. .+.|++++.|.-|++||..... ...-.|...|+++.|...| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 99988888888899999999999853 4789999999999999998765 5666789999999998877 77888
Q ss_pred EecCCeEEEEEecCCceeeeEeeCCc--CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC---CCCCeE
Q 009188 418 NLLNQEIHLWNIEGEVKLVAKYKGHK--RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG---HSGAVN 492 (540)
Q Consensus 418 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~ 492 (540)
++.|..|.+--.+.. .....+..|. -....+.-+...|..+++++++.|..|+|||+.+|+..+.|++ |.+...
T Consensus 567 cGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred ccCchhhheehhccc-cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 998887765433321 1122222222 2222333344478899999999999999999999999999985 678889
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCC----CceEecc
Q 009188 493 CVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHS----NGVHYCN 537 (540)
Q Consensus 493 ~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~----~~v~~c~ 537 (540)
.+...|.|- ++++...|.++.++|+-++++......+ .|+.|.|
T Consensus 646 Kv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 646 KVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred EEEECCCcc-EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 999999995 9999999999999999999998764333 2445544
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.3e-23 Score=194.50 Aligned_cols=283 Identities=14% Similarity=0.225 Sum_probs=231.7
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC-CCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH-QKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
+.--..+|.++||+.+.+.||.+-.||.|.||++.. .+-....+.++ +..|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~--~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN--NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCC--CceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 334467999999999999999999999999999874 34455555555 4679999999 5667888899999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE--eeccccceEEEEEEccCCCEEEEEecCCe
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC--WKGQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
.+++....+...++.|++++.+|.+..++.|+.||.+..++...+.+.. ......+++.+++|+|++..++.|+.||.
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 9999999999999999999999999999999999988888887666543 34455679999999999999999999999
Q ss_pred EEEEECCCceEEE------ee----cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeee
Q 009188 384 LLLLDREAKVERY------IE----EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 384 i~~~d~~~~~~~~------~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (540)
|++||...+.... .. ...-|.++.+- ....+++|...|.|.+||...+ .+++.+..|...+.++..
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav-- 253 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAV-- 253 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEE--
Confidence 9999998876322 11 22335566666 4457899999999999999877 788888888888766655
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCCCce----eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRASCDL----IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
.+++..+++++.|+.|.-|...+... ......|...|.+++..++ .+++||.|+++.+=....
T Consensus 254 -~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 254 -ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence 67889999999999999998766533 2334568899999999874 799999999998876655
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=202.53 Aligned_cols=306 Identities=20% Similarity=0.297 Sum_probs=250.7
Q ss_pred CCCCCccccCCCcCcCCCCcceE-EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCc-eEEEEEecCCCCCe
Q 009188 202 SDRDMSLYTDHQCGRDQIPSRTL-QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG-VTLKHKLSGHQKPV 279 (540)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v 279 (540)
..+.+.+|+-.. .+.+ .....|.+.|....|-|....+++++.|+.+++|-.+++.+ .+.++.-.||..+.
T Consensus 265 ~~G~m~~wDLe~-------kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 265 SNGDMAFWDLEK-------KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred CCceEEEEEcCC-------CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 334566665432 2333 34458999999999999999999999999999997775433 45566667999999
Q ss_pred EEEEEC-cCCCeEEEeeCCCcEEEEECCCC-------e--------E-------------EE------------------
Q 009188 280 SCVSWS-SDDQQLLTCGVEEAVRRWDVSSG-------N--------C-------------LH------------------ 312 (540)
Q Consensus 280 ~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~-------~--------~-------------~~------------------ 312 (540)
.|+.|. .+|..+.+++.|++.+.+++... + . +.
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 999998 68889999999988777765310 0 0 00
Q ss_pred --------------------Ee-----ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee---ccccceEE
Q 009188 313 --------------------VY-----EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK---GQRTLKIS 364 (540)
Q Consensus 313 --------------------~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~ 364 (540)
.+ +.....+++++.++.|++.+.|+..|.|-+|++.++...... ..|..+|+
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 00 012256889999999999999999999999999888776655 46778999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc
Q 009188 365 DLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 365 ~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
.++.+.-++.+++++.+|.+.+||..++. ........+++.+..+.....++++..|-.|+++|..+. +.++.|.+|.
T Consensus 498 gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~ 576 (910)
T KOG1539|consen 498 GLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHG 576 (910)
T ss_pred EEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccc
Confidence 99999999999999999999999999987 555567788999999999999999999999999999987 8999999999
Q ss_pred CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCC-CcEEEecCCC
Q 009188 444 RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDD-RTIRIWGLKD 520 (540)
Q Consensus 444 ~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-g~i~iw~~~~ 520 (540)
+.++.. .++|+|++|++++.|++|++||+.++.++..+. -..+++++.|+|+|. +|||...| .-|++|.-++
T Consensus 577 nritd~---~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD-~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 577 NRITDM---TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGD-FLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cceeee---EeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCC-EEEEEEecCceEEEEEchh
Confidence 985554 349999999999999999999999999998776 578899999999996 99999988 5699997543
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-25 Score=213.95 Aligned_cols=244 Identities=13% Similarity=0.180 Sum_probs=203.6
Q ss_pred cEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCCCeE
Q 009188 233 EVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 233 ~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
.+..++|+. +.++|||++..|.|.+||+......+.+..+..|...+++++|++ ...+|++||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 344566764 567999999999999999986333355667889999999999998 457899999999999999999999
Q ss_pred EEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCC-ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEE
Q 009188 311 LHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGG-KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d 388 (540)
..++.+....|.++.|+| .+..|+++...|.+.+||++. .........|.++|.++.|+|++.+|++|+.|+.|++||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 999988999999999999 678999999999999999975 444555677888999999999999999999999999999
Q ss_pred CCCce---EEEeecCCceeEEEEcCCCCE-EEEEe--cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEE
Q 009188 389 REAKV---ERYIEEDQTITSFSLSRDNKF-LLVNL--LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462 (540)
Q Consensus 389 ~~~~~---~~~~~~~~~i~~~~~s~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 462 (540)
..+.. ...+....++..+.|-|...+ |++++ .|-.|++||++...-+..++..|......+.+. +.+...+.
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~--~~d~~~l~ 326 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD--SGDRINLW 326 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc--CCCceeeE
Confidence 98654 556677889999999998755 44444 377899999999888899999999886665543 45667889
Q ss_pred EeeCCCcEEEEECCCC
Q 009188 463 SGSEDSQVYIWHRASC 478 (540)
Q Consensus 463 s~s~dg~i~iwd~~~~ 478 (540)
+++.||+|..-..+++
T Consensus 327 s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKNA 342 (839)
T ss_pred eecCccHHHHhhhhcc
Confidence 9999998876655543
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.1e-23 Score=199.37 Aligned_cols=299 Identities=21% Similarity=0.309 Sum_probs=234.4
Q ss_pred CcceEEecccCcCcEEEEEEecCCC---eEEEEeCCCcEEEEEeecCCce------------------EEE---------
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGK---YLASSSNDRSAIIWEVDLNGGV------------------TLK--------- 269 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~---~l~tg~~dg~i~iwd~~~~~~~------------------~~~--------- 269 (540)
....+..+.||.+.|.+++|...+. +||++|.|..|+||.+...+.. ...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3567789999999999999987554 8899999999999998654310 011
Q ss_pred -EEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE-------EEEeecCCCcEEEEEEecCCCEEEEEeCCCc
Q 009188 270 -HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC-------LHVYEKAGLGLVSCGWHPDRKWIFSGANDKS 341 (540)
Q Consensus 270 -~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 341 (540)
..+.||.+.|+++.|+|.+..|++++.|.++.+|...+..- +..+.+.........|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 12349999999999999999999999999999998765421 2222234556889999999999999999999
Q ss_pred EEEEecCC---ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce------EEEeecCCceeEEEEcCCC
Q 009188 342 ICMWELGG---KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV------ERYIEEDQTITSFSLSRDN 412 (540)
Q Consensus 342 i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~i~~~~~s~~~ 412 (540)
.++|.... -.......+|...|++++|+|.|.++++.+.|.+-+++-.-.++ .+...|...++|+++-+..
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 99998422 23344566788899999999999999999999999998876433 3334577889999999877
Q ss_pred CEEEEEecCCeEEEEEecC--------------------------------C-----------c----------------
Q 009188 413 KFLLVNLLNQEIHLWNIEG--------------------------------E-----------V---------------- 433 (540)
Q Consensus 413 ~~l~~~~~dg~i~i~d~~~--------------------------------~-----------~---------------- 433 (540)
..+++|.....+++|+... + .
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 7788888888889988642 0 0
Q ss_pred ----------------eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC-----cEEEEECCCCceeEeecCCCCCeE
Q 009188 434 ----------------KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS-----QVYIWHRASCDLIGALPGHSGAVN 492 (540)
Q Consensus 434 ----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~h~~~v~ 492 (540)
..+.++.+|... +.++..+|+++++|+++... .|++|+..+...+..+.+|+-.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyE---v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYE---VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCcee---EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence 001122233333 44455589999999988644 699999999999999999999999
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 493 CVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 493 ~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
.++||||+. +|++.|.|.++.+|...+..
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeeccc
Confidence 999999996 99999999999999986543
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=3.3e-22 Score=182.64 Aligned_cols=292 Identities=16% Similarity=0.248 Sum_probs=224.5
Q ss_pred CCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC-CCeEEEEECcCCCeEEEeeCC
Q 009188 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ-KPVSCVSWSSDDQQLLTCGVE 297 (540)
Q Consensus 219 ~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~d 297 (540)
.........+.-++.|..+.|+|.+.-++.....|.+..|+...+.-.+....+..+. ..|.|++|.++|. +++|..+
T Consensus 188 qk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~ 266 (626)
T KOG2106|consen 188 QKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSG 266 (626)
T ss_pred hhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCC
Confidence 3344444555667889999999976655554556899999988765555555555544 5699999999885 6789999
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE------------EE-----------
Q 009188 298 EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL------------EC----------- 354 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~----------- 354 (540)
|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-+-.+. ..
T Consensus 267 G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vG 345 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVG 345 (626)
T ss_pred ceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEe
Confidence 9999999988888887779999999999999995 55599999999998421111 00
Q ss_pred -----------------eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEE
Q 009188 355 -----------------WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 355 -----------------~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 417 (540)
....|......++.+|+...+++++.|+.+++|+ ..+..-......+..++.|+|.| .+++
T Consensus 346 TtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 346 TTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAV 423 (626)
T ss_pred eccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEE
Confidence 0113334566788899999999999999999999 44445555667889999999999 9999
Q ss_pred EecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC-ceeEeec-CCCCCeEEEE
Q 009188 418 NLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-DLIGALP-GHSGAVNCVS 495 (540)
Q Consensus 418 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~h~~~v~~l~ 495 (540)
|+..|...+.|.++. ..+..-.. ..+ +.+..++|+|.++|.|+.|+.|+||.+... ....... .|.++|+.+.
T Consensus 424 Gt~~G~w~V~d~e~~-~lv~~~~d-~~~---ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLD 498 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQ-DLVTIHTD-NEQ---LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLD 498 (626)
T ss_pred eeccceEEEEecccc-eeEEEEec-CCc---eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEee
Confidence 999999999999885 44444333 333 555556999999999999999999987653 3333332 2448999999
Q ss_pred eCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 496 WNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 496 ~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
|++|+. ++.+-+-|-.|..|....
T Consensus 499 wS~Ds~-~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 499 WSSDSQ-FLVSNSGDYEILYWKPSE 522 (626)
T ss_pred ecCCCc-eEEeccCceEEEEEcccc
Confidence 999995 999999999999995443
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=2.4e-23 Score=197.11 Aligned_cols=330 Identities=18% Similarity=0.280 Sum_probs=254.1
Q ss_pred HHHHhh-cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEE
Q 009188 190 VLQREA-CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTL 268 (540)
Q Consensus 190 ~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~ 268 (540)
.|+... .+++.+.|+.+.+|.+....--....-.+..+.|..++.+..-|+|+++.+++-+.-|..++|..........
T Consensus 274 ~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~ 353 (764)
T KOG1063|consen 274 WWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQ 353 (764)
T ss_pred EEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceee
Confidence 344443 6788899999999987654222222334455557778899999999999999999999999998444444555
Q ss_pred EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC----CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 009188 269 KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS----GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICM 344 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 344 (540)
.....||.+.|.+++|+|.|.+|+++|.|.+-+++-.-. -..+..-+.|+..++|+++-+....|++|.....+++
T Consensus 354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence 666789999999999999999999999999999986431 1234445578889999999987778899999999999
Q ss_pred EecCC----------c-e----------------------EE--------------E-----------------------
Q 009188 345 WELGG----------K-E----------------------LE--------------C----------------------- 354 (540)
Q Consensus 345 wd~~~----------~-~----------------------~~--------------~----------------------- 354 (540)
|+... + . .. .
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 87631 0 0 00 0
Q ss_pred ------eeccccceEEEEEEccCCCEEEEEecCC-----eEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecC
Q 009188 355 ------WKGQRTLKISDLEVTSDGKQIITMCKES-----ALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 355 ------~~~~~~~~v~~i~~~~~~~~l~~~~~d~-----~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
...+|...|.+++.+|+|+.+++++... .|++|+..+-. .....|.-.|+.++|||||++|++.+.|
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 0005667899999999999999998654 58999988744 5678899999999999999999999999
Q ss_pred CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC--ceeEe--ecCCCCCeEEEEeC
Q 009188 422 QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC--DLIGA--LPGHSGAVNCVSWN 497 (540)
Q Consensus 422 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~--~~~h~~~v~~l~~~ 497 (540)
.++.+|...........|...+...-.|-.|.|+|++.+++|+|.|.+|.+|..... +.+.. ...+..+|++++|.
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 999999986554444444333333445667778999999999999999999998877 44433 33488999999998
Q ss_pred CCCC----CEEEEEeCCCcEEEecCC
Q 009188 498 PANP----HMLASASDDRTIRIWGLK 519 (540)
Q Consensus 498 ~~~~----~~l~s~~~Dg~i~iw~~~ 519 (540)
|-.. .+++.|-..|.|.+|..+
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccccccccceEEEEecccEEEEEecc
Confidence 7432 277888899999999976
No 130
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=189.55 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=224.9
Q ss_pred ceEEecccCcCcEEEEEEecCC--CeEEEEeCCCcEEEEEeecC-CceEEEEEecCCCCCeEEEEECcC-CCeEEEeeCC
Q 009188 222 RTLQILQGHTDEVWFLQFSHNG--KYLASSSNDRSAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVE 297 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g--~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d 297 (540)
....+.+-|.+.|++++|+|.. +++|+|..-|.|-+||+... ....-...+..|..+|.++.|+|. ...+++.|.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3455667789999999999964 48899999999999999522 222345567899999999999994 4689999999
Q ss_pred CcEEEEECCCCeEE--EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE-EEeeccccceEEEEEEccCCC-
Q 009188 298 EAVRRWDVSSGNCL--HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL-ECWKGQRTLKISDLEVTSDGK- 373 (540)
Q Consensus 298 g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~- 373 (540)
|+|+.-|++++..- .........+.++.|+.+...++.+..=|...+||+++... ......|...|.+++++|-..
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 99999999876443 33333455677888888888888888888999999976443 333344555899999999764
Q ss_pred EEEEEecCCeEEEEECCCce------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEec---CCceeeeEeeC---
Q 009188 374 QIITMCKESALLLLDREAKV------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE---GEVKLVAKYKG--- 441 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~--- 441 (540)
++++++.|++.++||++.-. .....|...|.+..|||.+..|++.+.|..|+|||.. ....+...+..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR 416 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence 57899999999999987633 4556789999999999988789999999999999984 22233333221
Q ss_pred CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCC-CeEEE-EeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 442 HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSG-AVNCV-SWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 442 ~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l-~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
+......+.+.| .|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|.+..+++.++..|.|+||.-+
T Consensus 417 t~RwlT~fKA~W-~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 417 TGRWLTPFKAAW-DPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccchhhee-CCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 112233344444 88999999999999999999999998888754433 56554 6999885355555677889988655
Q ss_pred C
Q 009188 520 D 520 (540)
Q Consensus 520 ~ 520 (540)
.
T Consensus 496 ~ 496 (498)
T KOG4328|consen 496 K 496 (498)
T ss_pred C
Confidence 4
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.5e-25 Score=191.28 Aligned_cols=245 Identities=18% Similarity=0.296 Sum_probs=197.2
Q ss_pred EEEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 009188 268 LKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 346 (540)
.+..+.+|.++|.|++=+|.. ..+++|+.||.|++||+.+..+...++.|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 344568999999999999987 7899999999999999999999999999999999999986 6789999999999999
Q ss_pred cCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC--ceEEEeecCCceeEEEEcCCC-CEEEEEecCCe
Q 009188 347 LGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA--KVERYIEEDQTITSFSLSRDN-KFLLVNLLNQE 423 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~ 423 (540)
+.......+... +.+..+.-+..+..+++++. .|.+||... +...+......|.++.|+|.. ..|+++..|+.
T Consensus 136 ~~~~p~~tilg~--s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDGPPLHTILGK--SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccCCcceeeecc--ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 987544333332 25666666666777777654 588999755 336666677889999999976 56666779999
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC-ceeEeecCCCCCeEEEEeCCCCCC
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-DLIGALPGHSGAVNCVSWNPANPH 502 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~ 502 (540)
|.+||++.. .++++....-.. ...|| +|.+-.+++|++|..++.||++.. .++....+|.+.|.+++|+|.|.
T Consensus 212 IvLyD~R~~-~Pl~KVi~~mRT---N~Isw-nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~- 285 (433)
T KOG0268|consen 212 IVLYDLRQA-SPLKKVILTMRT---NTICW-NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ- 285 (433)
T ss_pred eEEEecccC-Cccceeeeeccc---cceec-CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc-
Confidence 999999987 444443322111 12333 778888899999999999998874 56788899999999999999996
Q ss_pred EEEEEeCCCcEEEecCCCCCcc
Q 009188 503 MLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 503 ~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
-++|||.|.+|+||.++.+...
T Consensus 286 EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred hhccccccceEEEeecCCCcch
Confidence 8999999999999999987654
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=198.60 Aligned_cols=252 Identities=18% Similarity=0.300 Sum_probs=214.0
Q ss_pred eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE--EeecCCCcEEE-EEEec-CCCEEEEEeCCCc
Q 009188 266 VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH--VYEKAGLGLVS-CGWHP-DRKWIFSGANDKS 341 (540)
Q Consensus 266 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~ 341 (540)
+++.+.+.+|...|..+++.+ +..++++|.||++++|+-..++.+. .+.++.+-|.. +++.+ ++-.+++|+.|++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 456778999999999988774 4589999999999999976655443 45566666666 77775 5557999999999
Q ss_pred EEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecC
Q 009188 342 ICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
|.+|...+.....+...|...|.+++...++. +++|+.|.++++|-.........+|...|.++..-|++ .+++|+.|
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCc
Confidence 99999999998888999999999999888888 99999999999999988888899999999999999988 88999999
Q ss_pred CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCC
Q 009188 422 QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANP 501 (540)
Q Consensus 422 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 501 (540)
.+|++|.-. ..+++|.+|...+..+... ++..+++++.||.|+.|++ +|+.+.++.+|++-|++++..+++.
T Consensus 161 KtIklWk~~---~~l~tf~gHtD~VRgL~vl----~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 161 KTIKLWKGG---TLLKTFSGHTDCVRGLAVL----DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred ceeeeccCC---chhhhhccchhheeeeEEe----cCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC
Confidence 999999853 7889999999876555443 3445889999999999998 8999999999999999999666664
Q ss_pred CEEEEEeCCCcEEEecCCCCCccccccCCC
Q 009188 502 HMLASASDDRTIRIWGLKDLNVKRKDCHSN 531 (540)
Q Consensus 502 ~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~ 531 (540)
.++|+|.|++++||+.. ++.+...+|.
T Consensus 233 -~Ivs~gEDrtlriW~~~--e~~q~I~lPt 259 (745)
T KOG0301|consen 233 -LIVSTGEDRTLRIWKKD--ECVQVITLPT 259 (745)
T ss_pred -eEEEecCCceEEEeecC--ceEEEEecCc
Confidence 99999999999999988 6666655555
No 133
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=4.9e-23 Score=178.01 Aligned_cols=273 Identities=17% Similarity=0.215 Sum_probs=210.6
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEEeecCCc---------eEEEEEec-CCCCCeEEEEEC-------cCCCeEEEeeCC
Q 009188 235 WFLQFSHNGKYLASSSNDRSAIIWEVDLNGG---------VTLKHKLS-GHQKPVSCVSWS-------SDDQQLLTCGVE 297 (540)
Q Consensus 235 ~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~---------~~~~~~~~-~h~~~v~~l~~s-------~~~~~l~s~~~d 297 (540)
..+.|||||..|++-+.|..+.+|++....- ......+. .....|...+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3678999999999999999999999853210 01111111 123457777775 577899999999
Q ss_pred CcEEEEECCCCeEEEEeecCC-----CcEEEEEEecCCCEEEEEeCCCcEEEEec-CCceEE---Ee----eccccceEE
Q 009188 298 EAVRRWDVSSGNCLHVYEKAG-----LGLVSCGWHPDRKWIFSGANDKSICMWEL-GGKELE---CW----KGQRTLKIS 364 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~---~~----~~~~~~~v~ 364 (540)
.-|++||.-+|+....+..-. ....+++|+|||.+|++|. ...|+++|+ +.+... .. .....+.+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 999999999999887776432 2456899999999999875 468999999 432211 11 122345789
Q ss_pred EEEEccCCC-EEEEEecCCeEEEEECCCc--eEEEeecCCceeEEEEcCCCCEEEEEec-CCeEEEEEecCCceeeeEee
Q 009188 365 DLEVTSDGK-QIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEGEVKLVAKYK 440 (540)
Q Consensus 365 ~i~~~~~~~-~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~ 440 (540)
+++++|... .+++++....+-++.-... .....+|.+.|+.++|.++|+.|++|.. +..|..||++....++..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 999999765 7888888887777665554 4666689999999999999999999886 77899999998777887777
Q ss_pred CCcC-CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCC
Q 009188 441 GHKR-SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-CDLIGALPGHSGAVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 441 ~~~~-~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 510 (540)
.|.. ....|. ....|++++|++|+.||.|++||+++ |..+..+..|...|+.++++|--+ ++++++..
T Consensus 292 rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 292 RHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred hhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccc-eeeeccCc
Confidence 7766 333333 33488999999999999999999998 787888888999999999999876 88887654
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=189.46 Aligned_cols=243 Identities=20% Similarity=0.353 Sum_probs=190.1
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEE------------------ecCCCCCeEEEEECcC-CCeEEEeeCCCcEEE
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHK------------------LSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRR 302 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~i 302 (540)
-|+|+|.|+.|..|.|||++......+..+ ..+|++.|.+++|+.. .+.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 367999999999999999875433222222 2378999999999875 468899999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 303 WDVSSGNCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 303 wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
||+.+|++..++..|+..|.++.|+| ....|++|+.|++|.+.|.+.... ....|.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-----------s~~~wk------------ 327 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-----------SGKEWK------------ 327 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-----------cCceEE------------
Confidence 99999999999999999999999999 567899999999999999874110 011111
Q ss_pred CeEEEEECCCceEEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcE
Q 009188 382 SALLLLDREAKVERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 382 ~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 460 (540)
..+.|-.++|.|.. ..+++++.||.++-+|+|...+++.++..|...+..+.... ....+
T Consensus 328 -----------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~--~~p~~ 388 (463)
T KOG0270|consen 328 -----------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI--QTPGL 388 (463)
T ss_pred -----------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC--CCCcc
Confidence 13456667777754 66778888999999999998899999999999887766543 44578
Q ss_pred EEEeeCCCcEEEEECCCCce--eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 461 IASGSEDSQVYIWHRASCDL--IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
+++++.|+.|++|++..-.+ +..-.-.-+...|.++.|+-...++.||..+.++|||+.+....++
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred eeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 99999999999999765443 2221112245678889999888999999999999999998776654
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.1e-24 Score=175.55 Aligned_cols=233 Identities=21% Similarity=0.321 Sum_probs=191.7
Q ss_pred hcccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEec--CCCeEEEEeCCCcEEEEEeecCCceEEEEEe
Q 009188 195 ACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSH--NGKYLASSSNDRSAIIWEVDLNGGVTLKHKL 272 (540)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 272 (540)
..+.+++.|..+.+|..... .+...+..|.||.++|+.++|.. -|.+||+++.||.|.||.-..+ ........
T Consensus 24 krlATcsSD~tVkIf~v~~n----~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~ 98 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNN----GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEH 98 (299)
T ss_pred ceeeeecCCccEEEEEEcCC----CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhh
Confidence 34678889999999876533 33578899999999999999976 7999999999999999987644 56666777
Q ss_pred cCCCCCeEEEEECcC--CCeEEEeeCCCcEEEEECCCC---eEEEEeecCCCcEEEEEEecC---C-----------CEE
Q 009188 273 SGHQKPVSCVSWSSD--DQQLLTCGVEEAVRRWDVSSG---NCLHVYEKAGLGLVSCGWHPD---R-----------KWI 333 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l 333 (540)
..|...|++++|.|. |-.|++++.||.|.|.+.++. ...+....|.-.|++++|.|. | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 899999999999885 678999999999999988654 234556688899999999985 4 569
Q ss_pred EEEeCCCcEEEEecCCc--eEEEeeccccceEEEEEEccCC----CEEEEEecCCeEEEEECCCce-----EEEeecCCc
Q 009188 334 FSGANDKSICMWELGGK--ELECWKGQRTLKISDLEVTSDG----KQIITMCKESALLLLDREAKV-----ERYIEEDQT 402 (540)
Q Consensus 334 ~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~ 402 (540)
++|+.|..|+||+.... ........|...|++++|.|.- .++++++.||++.+|..+... .........
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~ 258 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDV 258 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcc
Confidence 99999999999999764 3344567788899999999964 679999999999999877532 222235677
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
+.+++||+.|+.|++++.|+.+.+|.-...
T Consensus 259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred eEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 899999999999999999999999976543
No 136
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=1.5e-22 Score=180.26 Aligned_cols=292 Identities=16% Similarity=0.271 Sum_probs=223.9
Q ss_pred cCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCC------ceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 231 TDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNG------GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 231 ~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
..+|.++.|.+++. .+|||+.|..|+||.++.+. .......+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999776 99999999999999887432 355677888999999999999999999999999999999
Q ss_pred ECC--------C--------CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEE
Q 009188 304 DVS--------S--------GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLE 367 (540)
Q Consensus 304 d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 367 (540)
... + ....+.+.+|...|..++|+|++.++++++.|..+++||+..+.+......|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 123456668999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEecCCeEEEEECCCce----EE-----------------EeecC----CceeEEEEcCCCCEEEEEec--
Q 009188 368 VTSDGKQIITMCKESALLLLDREAKV----ER-----------------YIEED----QTITSFSLSRDNKFLLVNLL-- 420 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~~i~~~d~~~~~----~~-----------------~~~~~----~~i~~~~~s~~~~~l~~~~~-- 420 (540)
|.|-++++++-+.|...+.+...... .. ...|+ .-...++|+|+|.++++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999998888866666554422 00 01111 22356789999999988542
Q ss_pred --C-----CeEEEEEecCCceeeeEeeCCcCCeeEEEeeec---------------cCCCcEEEEeeCCCcEEEEECCCC
Q 009188 421 --N-----QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG---------------GLEQAFIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 421 --d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~~l~s~s~dg~i~iwd~~~~ 478 (540)
. +..++|+-....++...+.+.......++++.. -|.+..+|.++ ...|++||..+.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccc
Confidence 2 234566655444566666665555555544321 12233344444 567999999998
Q ss_pred ceeEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 479 DLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 479 ~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
.++..... |-..|++++|+++|. .++..|.||..-+-.+...++-
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~-~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGS-VLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCc-EEEEeccCCceEEEEEcchhcc
Confidence 88876653 889999999999996 8888999998777666554443
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9e-23 Score=199.34 Aligned_cols=244 Identities=18% Similarity=0.342 Sum_probs=202.8
Q ss_pred cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG-NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE 351 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 351 (540)
..|..+-+.|+|.|+|.+|++++.||.|++|+..+. +....+..++..|.+++.. +++|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 368889999999999999999999999999987665 4444444466777777654 5599999999999999998877
Q ss_pred EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 352 LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 352 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
..........++++++++.+|++++.|+.|-.|++.+..... ....+|..+|.++.++|.+++|++.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 766666666789999999999999999999999999987754 777889999999999999999999999999999999
Q ss_pred cCCceeeeEeeCCcCC-----eeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC--CCCCeEEEEeCCCCCC
Q 009188 430 EGEVKLVAKYKGHKRS-----RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG--HSGAVNCVSWNPANPH 502 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~ 502 (540)
.++ .+..++.+.... ...+.-..|+|++..++..+.|+.|.+|+..++.....+.. +...+..+.|+|.|.
T Consensus 168 ~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~- 245 (933)
T KOG1274|consen 168 QDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK- 245 (933)
T ss_pred ccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc-
Confidence 876 444444332211 11223344589988888889999999999999999888764 445599999999996
Q ss_pred EEEEEeCCCcEEEecCCC
Q 009188 503 MLASASDDRTIRIWGLKD 520 (540)
Q Consensus 503 ~l~s~~~Dg~i~iw~~~~ 520 (540)
+||+++.||.|.|||+++
T Consensus 246 YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeeeccCCcEEEEeccc
Confidence 999999999999999996
No 138
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=2.3e-23 Score=195.03 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=115.6
Q ss_pred cCCeEEEEECCCce------EEEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCC------ceeeeEeeCCcCCe
Q 009188 380 KESALLLLDREAKV------ERYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGE------VKLVAKYKGHKRSR 446 (540)
Q Consensus 380 ~d~~i~~~d~~~~~------~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~ 446 (540)
..|.|.+|+++..- .........|+.+.|+| |...|++++.||.|++|.+..+ ..+...+..|...+
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 34666667665422 22333456789999999 7789999999999999998654 23456677888888
Q ss_pred eEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 447 FVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 447 ~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
+.+++... -...|++++.|-+|++||+.+++....+.+|.+.|.+++|+|+|. .++|.+.||+|++|+.++++..
T Consensus 681 ~slRfHPL--AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 681 TSLRFHPL--AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred EEEEecch--hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCc
Confidence 87776543 346799999999999999999999999999999999999999995 9999999999999999887654
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3.4e-21 Score=182.79 Aligned_cols=280 Identities=13% Similarity=0.107 Sum_probs=200.0
Q ss_pred ccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeE-EEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 199 HNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYL-ASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
+...++.+.+|+... .+.+..+.+|. .+.+++|+|+|+.+ ++++.++.|++||...+ +....+..+..
T Consensus 6 s~~~d~~v~~~d~~t-------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~ 74 (300)
T TIGR03866 6 SNEKDNTISVIDTAT-------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGPD 74 (300)
T ss_pred EecCCCEEEEEECCC-------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCCC
Confidence 445666777775432 34566666654 46789999999976 56678899999998754 33344444433
Q ss_pred CeEEEEECcCCCeEEEe-eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC-cEEEEecCCceEEEe
Q 009188 278 PVSCVSWSSDDQQLLTC-GVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-SICMWELGGKELECW 355 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~ 355 (540)
+..++|+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|++..+++++.++ .+.+||..+......
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 5678999999977655 5689999999999888777753 33568899999999999988775 467789887665443
Q ss_pred eccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCceE-EEee-c-------CCceeEEEEcCCCCEEEEE-ecCCeE
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREAKVE-RYIE-E-------DQTITSFSLSRDNKFLLVN-LLNQEI 424 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~~-~~~~-~-------~~~i~~~~~s~~~~~l~~~-~~dg~i 424 (540)
.... ..+..++|++++..+++++ .++.+.+||..+... .... + ......++|+|++++++++ ..++.+
T Consensus 153 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 153 VLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 2222 2457899999999886554 689999999988652 2111 1 1123568899999986554 456789
Q ss_pred EEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe-eCCCcEEEEECCCCceeEeecCCCCCeEEEEeCC
Q 009188 425 HLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG-SEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNP 498 (540)
Q Consensus 425 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 498 (540)
.+||.++. +....... ..... ...++|++.+|+++ +.+|.|++||+.+++.+..++.. ...++++++|
T Consensus 232 ~v~d~~~~-~~~~~~~~-~~~~~---~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTY-EVLDYLLV-GQRVW---QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCC-cEEEEEEe-CCCcc---eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999876 44443322 22222 23348999998876 56899999999999999998754 5668888875
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=185.38 Aligned_cols=247 Identities=16% Similarity=0.214 Sum_probs=200.7
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE-EEEeecC-CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC-LHVYEKA-GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL 352 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 352 (540)
...+|.+++|+.+.+.||.+-.+|.|-+|++..+=. ...+.++ ...|.+++|.+ +..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 456799999999999999999999999999988643 3334443 56899999994 55788999999999999988887
Q ss_pred EEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEE----EeecCCceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 353 ECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVER----YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 353 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
........+.|.+++.+|.+..++.|+.||.+..++....... +....+.+.+++|+|++..++.|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 7777777789999999999999999999998888888877633 334568999999999999999999999999999
Q ss_pred ecCCceeee---EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEE
Q 009188 429 IEGEVKLVA---KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLA 505 (540)
Q Consensus 429 ~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 505 (540)
...+..... .+.+-......+.+....-....|++|..-|+|.+||...+.++..+..|.+.|.+++..+++. .++
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d-~vf 261 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED-RVF 261 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC-eEE
Confidence 987743331 1112222111222222223456799999999999999999999999999999999999999885 899
Q ss_pred EEeCCCcEEEecCCCCCc
Q 009188 506 SASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 506 s~~~Dg~i~iw~~~~~~~ 523 (540)
++|.|+.|..+...+.+.
T Consensus 262 saGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EccCCCceEEEEecCCcc
Confidence 999999999998887643
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.9e-23 Score=190.58 Aligned_cols=239 Identities=13% Similarity=0.245 Sum_probs=200.5
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
-..-|.++..+|||+.|++|+.-.++.|||+.... ......+....-.+.+++.+||.+..+++..||.|.|||+.+..
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 45689999999999999999999999999997542 23334444555568889999999999999999999999999999
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEEC
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDR 389 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~ 389 (540)
.++.|++|...+.|+.+++||..|-+|+-|.+|+.||++.+....... ..+.|.++.++|++.++++|-.++.+.+...
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEec
Confidence 999999999999999999999999999999999999998655433222 2358999999999999999999999999988
Q ss_pred CCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC
Q 009188 390 EAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS 468 (540)
Q Consensus 390 ~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg 468 (540)
.... .....|+..|.++.|.+.|+++++.+.|+-+..|...-+..+. ..+.. ..+.+|..+.+.+||++|+.|.
T Consensus 622 skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF-qskE~----SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 622 SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKES----SSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee-ecccc----CcceeeeeccCceEEEecCCCc
Confidence 8766 5666789999999999999999999999999999987663322 22211 1355667789999999999998
Q ss_pred cEEEEEC
Q 009188 469 QVYIWHR 475 (540)
Q Consensus 469 ~i~iwd~ 475 (540)
...+|.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 8888864
No 142
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3e-23 Score=187.60 Aligned_cols=242 Identities=15% Similarity=0.269 Sum_probs=187.8
Q ss_pred HHHHhh-cccccCCCCCCccccCCCcCcCCC---CcceEEecccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCC
Q 009188 190 VLQREA-CMFHNSSDRDMSLYTDHQCGRDQI---PSRTLQILQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNG 264 (540)
Q Consensus 190 ~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~ 264 (540)
-.++.. ++.+.+....+.+|+...-..... +.++-..|.||.+.=+.++|++... .|++|+.|++|.+||+....
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 334443 334445556677765433211111 3455668999999888999999544 79999999999999997554
Q ss_pred c----eEEEEEecCCCCCeEEEEECcC-CCeEEEeeCCCcEEEEECC--CCeEEEEeecCCCcEEEEEEec-CCCEEEEE
Q 009188 265 G----VTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVS--SGNCLHVYEKAGLGLVSCGWHP-DRKWIFSG 336 (540)
Q Consensus 265 ~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 336 (540)
. ......+.+|...|..++|++- ...+++++.|+.+.|||++ +.++.+....|..+|.|++|+| ++..||+|
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~ 291 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG 291 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec
Confidence 3 4556778999999999999984 5688899999999999999 5677778889999999999999 66788999
Q ss_pred eCCCcEEEEecCC-ceEEEeeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCCce----------------EEEee
Q 009188 337 ANDKSICMWELGG-KELECWKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREAKV----------------ERYIE 398 (540)
Q Consensus 337 ~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~----------------~~~~~ 398 (540)
+.|++|.+||+++ .........|...|..+.|+|+. ..|++++.|+.+.+||+..-. ...-+
T Consensus 292 S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 292 SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence 9999999999986 33445566777899999999986 557788899999999986521 12235
Q ss_pred cCCceeEEEEcCCCC-EEEEEecCCeEEEEEecC
Q 009188 399 EDQTITSFSLSRDNK-FLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 399 ~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~ 431 (540)
|...|..+.|+|... .+++.+.|+.+.||.+..
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 778899999999875 566678899999999863
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5e-24 Score=213.21 Aligned_cols=284 Identities=20% Similarity=0.316 Sum_probs=220.9
Q ss_pred EEEEecCCC-eEEEE----------eCCCcEEEEEeecCCce---EEEEEecCCCCCeEEEEECcCCCe----EEEeeCC
Q 009188 236 FLQFSHNGK-YLASS----------SNDRSAIIWEVDLNGGV---TLKHKLSGHQKPVSCVSWSSDDQQ----LLTCGVE 297 (540)
Q Consensus 236 ~~~~sp~g~-~l~tg----------~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~~~----l~s~~~d 297 (540)
.++|+|.+. ++|+| +.+.++.||.++..... +....+ .-....+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 578999887 56654 33566777876643222 122111 23456789999987765 8888899
Q ss_pred CcEEEEECCC---C---eEEEEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCceEEEe--eccccceEEEEEE
Q 009188 298 EAVRRWDVSS---G---NCLHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECW--KGQRTLKISDLEV 368 (540)
Q Consensus 298 g~i~iwd~~~---~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~ 368 (540)
|.|.+||... + ..+.....|.+.|..+.|++. ++.|++|+.||.|.|||++..+.... .......|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999865 2 345667789999999999995 45999999999999999976332222 2224457999999
Q ss_pred ccCC-CEEEEEecCCeEEEEECCCce--EEEeec--CCceeEEEEcCCC-CEEEEEecCC---eEEEEEecCCceeeeEe
Q 009188 369 TSDG-KQIITMCKESALLLLDREAKV--ERYIEE--DQTITSFSLSRDN-KFLLVNLLNQ---EIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 369 ~~~~-~~l~~~~~d~~i~~~d~~~~~--~~~~~~--~~~i~~~~~s~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~ 439 (540)
+..- ..|++++.+|.+.+||++.+. ..+..+ ...+..++|+|+. ..+++++.|. .|.+||++....+++.+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 8654 557788889999999999875 232222 2447799999987 5566666544 69999999887899999
Q ss_pred eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 440 ~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.+|...+..+.+| ..|..++++++.|+.|.+|+.++++.+..+....+.+..+.|+|..+.+++.++.||.|-|+.+.
T Consensus 250 ~~H~~GilslsWc--~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 250 EGHQRGILSLSWC--PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cccccceeeeccC--CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 9999987777665 45668999999999999999999999999998889999999999999899999999999999998
Q ss_pred CCC
Q 009188 520 DLN 522 (540)
Q Consensus 520 ~~~ 522 (540)
+..
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 765
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=9.9e-23 Score=191.22 Aligned_cols=278 Identities=18% Similarity=0.265 Sum_probs=201.2
Q ss_pred ccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC
Q 009188 197 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~ 276 (540)
++....++.+.+++..... .......+.....|.+.|..+.|-|....|++++.|.++++||+..+.- .-...+.+|.
T Consensus 67 LavadE~G~i~l~dt~~~~-fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~GH~ 144 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKSIV-FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-VGGRLNLGHT 144 (720)
T ss_pred EEEecCCCceeeecchhhh-cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-ecceeecccc
Confidence 4445566667766543321 1112223566778999999999999777899999999999999986522 2223488999
Q ss_pred CCeEEEEECcCC-CeEEEeeCCCcEEEEECCCCe---------------------------EEEEeecCCCcEEE---EE
Q 009188 277 KPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGN---------------------------CLHVYEKAGLGLVS---CG 325 (540)
Q Consensus 277 ~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~---~~ 325 (540)
+.|.+++|.|.+ ..|++|+.||.|.|||++-.. .+.....+...|.+ +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 999999999954 678899999999999986322 01111233334444 55
Q ss_pred EecCCCEEEEEeC-CCcEEEEecCCceEEEe------e-----ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce
Q 009188 326 WHPDRKWIFSGAN-DKSICMWELGGKELECW------K-----GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV 393 (540)
Q Consensus 326 ~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~------~-----~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~ 393 (540)
+..|...|++++. |+.|++||++....... . ......+.++..+..|.++.+.+.|+.|+.|++.+..
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 6678888998887 99999999975322111 0 1123457888888899999999999999999988754
Q ss_pred EEEe----ec--CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC
Q 009188 394 ERYI----EE--DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED 467 (540)
Q Consensus 394 ~~~~----~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d 467 (540)
.... ++ ...-..-..+|++.++++|+.|...++|.+.........+.+|...++.+.++. ++... ++++++|
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-S~~t~-v~TcSdD 382 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-SATTP-VATCSDD 382 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-ccCCC-ceeeccC
Confidence 2211 11 111223356899999999999999999999988778888899999988888876 44544 5566999
Q ss_pred CcEEEEECCCC
Q 009188 468 SQVYIWHRASC 478 (540)
Q Consensus 468 g~i~iwd~~~~ 478 (540)
..++||++..+
T Consensus 383 ~~~kiW~l~~~ 393 (720)
T KOG0321|consen 383 FRVKIWRLSNG 393 (720)
T ss_pred cceEEEeccCc
Confidence 99999998654
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=8.8e-22 Score=170.73 Aligned_cols=290 Identities=21% Similarity=0.362 Sum_probs=223.3
Q ss_pred EecccCcCcEEEEEEec-----CCCeEEEEeCCCcEEEEEeecCCceEEEEEec--CCCCCeEEEEECcC----CCeEEE
Q 009188 225 QILQGHTDEVWFLQFSH-----NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS--GHQKPVSCVSWSSD----DQQLLT 293 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp-----~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s 293 (540)
+..++|+.+|..++|++ .-..+||+|. ..+.+|.............+. .|......++|+-+ ..++|+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45678999999999985 2335666665 579999988665444444443 36777888888753 458999
Q ss_pred eeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceEEEeec---cccceEEEEEEc
Q 009188 294 CGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKELECWKG---QRTLKISDLEVT 369 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~ 369 (540)
||.-|.|+|.|+.++++...+.+|+..|..+.++|+. +++++++.|..|++|++++..+..... .|...|.++.|+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 9999999999999999999999999999999999954 688899999999999999988877664 566789999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCce-----EEE-------------------------eecCCceeEEEEcCCCCEEEEEe
Q 009188 370 SDGKQIITMCKESALLLLDREAKV-----ERY-------------------------IEEDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 370 ~~~~~l~~~~~d~~i~~~d~~~~~-----~~~-------------------------~~~~~~i~~~~~s~~~~~l~~~~ 419 (540)
++|.++++++.|.++.+|++..+. ... ..|...|.|+.| -|+++++-+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSks 268 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKS 268 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhhheeecc
Confidence 999999999999999999998533 000 012222333333 257888888
Q ss_pred cCCeEEEEEecC-C------------ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee--Eee
Q 009188 420 LNQEIHLWNIEG-E------------VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI--GAL 484 (540)
Q Consensus 420 ~dg~i~i~d~~~-~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~ 484 (540)
.++.|..|.... . ......+.-....+..+++.+ .+.++.||.|...|.|++||++...+. .++
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-cHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 899999998721 1 122344455555666777766 788899999999999999999887663 222
Q ss_pred c--CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 485 P--GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 485 ~--~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
. .....|...+|+.++. +|+...+|++|.-||.-
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 2 1246799999999996 99999999999999864
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.8e-24 Score=203.35 Aligned_cols=254 Identities=17% Similarity=0.351 Sum_probs=220.1
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLV 322 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 322 (540)
+.+++.+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~---------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR---------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccccceeeeeeccccccch---------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence 3345555556667788764 2457888888888877889999999999999999988888888999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC-ce-EEEeecC
Q 009188 323 SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA-KV-ERYIEED 400 (540)
Q Consensus 323 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~-~~-~~~~~~~ 400 (540)
++.|+++...|++|+.+|+|++||+...........|...+.++.|+|-+.+++.|+.|+.+.+||.+. +. ..+..|.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence 999999999999999999999999988777777777888999999999999999999999999999984 33 5555688
Q ss_pred CceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce
Q 009188 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 401 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 480 (540)
..+..+.|+|+|++++.++.|..+++||...+ +....|..|...+..+. ++|..-++++|+.|++|++||+++.+.
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle---~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLE---FHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccc---cCchhhhhccCCCCceeeeeccceeEE
Confidence 88999999999999999999999999999877 88899999988766555 488888999999999999999999999
Q ss_pred eEeecCCCCCeEEEEeCCCCCCEEEEEeCC
Q 009188 481 IGALPGHSGAVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 481 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 510 (540)
+.........|.+.+|+|++. .+.+|..+
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred eeccCCccCCceeeeecCCce-eeecCchh
Confidence 988888889999999999995 66666544
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9.7e-24 Score=200.63 Aligned_cols=237 Identities=16% Similarity=0.336 Sum_probs=204.3
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD 304 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 304 (540)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+... .....+.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 455679999999998778899999999999999987533 34456899999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeE
Q 009188 305 VSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
++.++.++++.+|...+..+.|+|-+.+++.|+.|+.+++||++..-+......|...+..+.|+|+|++++.++.|.++
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 99999999999999999999999999999999999999999998655555566688889999999999999999999999
Q ss_pred EEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEE
Q 009188 385 LLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462 (540)
Q Consensus 385 ~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 462 (540)
++||...+. ..+..|...+.++.|+|..-.++.|+.|+++++||+++. ..+........ .+.+..+++++..++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~---~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETD---GVRSLAFNPDGKIVL 254 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCccC---CceeeeecCCceeee
Confidence 999998876 456669999999999999999999999999999999865 44443333333 355566689999998
Q ss_pred EeeCCC
Q 009188 463 SGSEDS 468 (540)
Q Consensus 463 s~s~dg 468 (540)
+|..+.
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 887654
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=9e-22 Score=185.54 Aligned_cols=274 Identities=16% Similarity=0.239 Sum_probs=215.1
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH 312 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 312 (540)
.|..++|-|||..|+.+..+ .+.+||.+.+ ....++++|.+.|+|++|+.||+.+++|+.|..|.+|+-.- +-+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-ccee
Confidence 78999999999988877654 6999999877 56778999999999999999999999999999999998533 2233
Q ss_pred EeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCc
Q 009188 313 VYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK 392 (540)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~ 392 (540)
.+ .|+..|.|+.|+|-...+++++-. ..-+|....+.+.... ...++.+.+|..||.+++.|-.+|+|.+-+....
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~k--ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHK--SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhh--hheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 33 688899999999998899988764 4678987655443322 2347899999999999999999999999876665
Q ss_pred eEE-E---eecCCceeEEEEcCCC-----CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE
Q 009188 393 VER-Y---IEEDQTITSFSLSRDN-----KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 393 ~~~-~---~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
... . -+.+.+|.+++|+|.. ..+++...+.++.+|.+.+. .+.+-..-.-...++. .-++|.|+..
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~FdP~Cis---Yf~NGEy~Li 239 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFDPCCIS---YFTNGEYILL 239 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCCCCchhhe---eccCCcEEEE
Confidence 422 2 2367899999999954 57788888888888888764 2221111111111222 2579999999
Q ss_pred eeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 464 GSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 464 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
|+.|+.+.+|- +.|-.+.++......|+.++..|++. .++.|+.||+|-.|++-...
T Consensus 240 GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 240 GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhHHhH
Confidence 99999999996 56777888877888999999999985 99999999999999976443
No 149
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=171.68 Aligned_cols=293 Identities=16% Similarity=0.206 Sum_probs=220.8
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecC---CceEEEEEe-cCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN---GGVTLKHKL-SGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~---~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
.+-+.+|.+-|.++.||.++++|++|+.|..+++|.++.- ...+++... ..|...|.|++|...+.++++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 4457789999999999999999999999999999998621 111222222 346689999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecC--CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce----EEEeeccccceEEEEEEccCC-
Q 009188 300 VRRWDVSSGNCLHVYEKA--GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE----LECWKGQRTLKISDLEVTSDG- 372 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~- 372 (540)
|...|+++.+.+..+... .+.|..+..+|..+.|++.+.+|.|.+||.+... +.. ..........+.|+|..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceeeeecCCCc
Confidence 999999999988877433 3589999999999999999999999999997543 222 22233467788898876
Q ss_pred CEEEEEecCCeEEEEECCCceEEE------ee---cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc
Q 009188 373 KQIITMCKESALLLLDREAKVERY------IE---EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 373 ~~l~~~~~d~~i~~~d~~~~~~~~------~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
..+++.+..+-+-+||.+...... .. ....-.++.|+|+|+.+++--....-.+||+-+...++..+....
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 456677888899999998765211 11 123346789999999999887777778899877545555554222
Q ss_pred C---CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-----C------------------ceeEeecCCCCCeEEEEeC
Q 009188 444 R---SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-----C------------------DLIGALPGHSGAVNCVSWN 497 (540)
Q Consensus 444 ~---~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~------------------~~~~~~~~h~~~v~~l~~~ 497 (540)
. ....+..|.+. +..-+++|+.+-.|++|.+.. | +.+..++||.+-++.+.|+
T Consensus 288 ~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 1 12233333333 334499999999999998642 1 2345678999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEecCC
Q 009188 498 PANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 498 ~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
|.. ++|++.|-...+++|..-
T Consensus 367 ~H~-~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 367 QHN-NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CCc-ceEeccchhhheeccccc
Confidence 988 599999999999999754
No 150
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=177.57 Aligned_cols=272 Identities=12% Similarity=0.180 Sum_probs=214.6
Q ss_pred ccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCC
Q 009188 197 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGH 275 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h 275 (540)
++..+.++.+++|.- +......++.+.--..+|.+++|+|+|. .+++++.-...+.||+.+.. ...+..+.++
T Consensus 228 llvaG~d~~lrifqv-----DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-~~k~~~~~g~ 301 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQV-----DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-VTKLKPPYGV 301 (514)
T ss_pred EEEecCCCcEEEEEe-----cCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc-cccccCCCCc
Confidence 344455556666542 2233446666666788999999999999 89999999999999997542 2333344444
Q ss_pred C-CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEE-
Q 009188 276 Q-KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELE- 353 (540)
Q Consensus 276 ~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~- 353 (540)
. ..+.....++++++|+..|..|.|.+....+++.+..++.. +.|..++|+.+++.|++++.+|.|.+||++...+.
T Consensus 302 e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 302 EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence 4 45778889999999999999999999999999999888655 48999999999999999999999999999876544
Q ss_pred EeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--------EEEeecCCceeEEEEcCCCCEEEEEec--CCe
Q 009188 354 CWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--------ERYIEEDQTITSFSLSRDNKFLLVNLL--NQE 423 (540)
Q Consensus 354 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~ 423 (540)
.+.......-++++.++++.++++|+..|.|.|||..+.. .........|+++.|+|+++.|+.++. +..
T Consensus 381 rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna 460 (514)
T KOG2055|consen 381 RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA 460 (514)
T ss_pred EEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc
Confidence 4444444456788999999999999999999999965532 233345678999999999999998875 667
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
+++-.+.+. .....+.........++++.++|++.++|.|..+|.+.+|.+.
T Consensus 461 lrLVHvPS~-TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 461 LRLVHVPSC-TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEeccce-eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 888888765 5555666666666677888889999999999999999999864
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.4e-21 Score=166.13 Aligned_cols=247 Identities=11% Similarity=0.130 Sum_probs=183.7
Q ss_pred eEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc
Q 009188 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ 358 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 358 (540)
..|+.|++.|.+||+|..||.|.|||+.|...-+.+.+|..+|++++|++||+.|++++.|..|.+||+..+.+......
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 78899999999999999999999999999998899999999999999999999999999999999999977665443333
Q ss_pred ccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCceEEEeecC------CceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 359 RTLKISDLEVTSDGKQIITMC-KESALLLLDREAKVERYIEED------QTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 359 ~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
.++|....|+|.....+.++ -+..-.+.+...+........ ....+..|.+.|+++++|+..|.+.+||..+
T Consensus 106 -~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred -cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 34899999998764443333 333344455544443333211 1223346899999999999999999999988
Q ss_pred CceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-------Cce--eEeecC--CCCCeEEEEeCCCC
Q 009188 432 EVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-------CDL--IGALPG--HSGAVNCVSWNPAN 500 (540)
Q Consensus 432 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~--~~~~~~--h~~~v~~l~~~~~~ 500 (540)
. +++..++... ...+...-++..|++++.-+.|..|+.|++.. +++ .+.+.. ..-.-.+++|+.+|
T Consensus 185 ~-e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 185 L-ECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred h-eeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 7 7777766554 23455555588999999999999999999762 111 122211 12234578899999
Q ss_pred CCEEEEEeCCCcEEEecCCCCCccccccC
Q 009188 501 PHMLASASDDRTIRIWGLKDLNVKRKDCH 529 (540)
Q Consensus 501 ~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~ 529 (540)
.+++++...-..++||.-..|.+.+....
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecC
Confidence 75555555667799999999988775433
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-21 Score=178.11 Aligned_cols=260 Identities=14% Similarity=0.187 Sum_probs=201.5
Q ss_pred cEEEEEEecCCCe-EEEEeCCCcEEEEEeecCC-ceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 233 EVWFLQFSHNGKY-LASSSNDRSAIIWEVDLNG-GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 233 ~V~~~~~sp~g~~-l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
.+.+++|+....+ +++.+.|..+++|.-+... .........+. .-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 4899999876642 2344667889999654221 12333333333 344555555568999999999999999998888
Q ss_pred EEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc-cceEEEEEEccCCCEE-EEEecCCeEEEEE
Q 009188 311 LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR-TLKISDLEVTSDGKQI-ITMCKESALLLLD 388 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l-~~~~~d~~i~~~d 388 (540)
.+.++.|...|+++.++-...+|++++..|.|.+..+.++......... ...++-+.|++..+.+ .+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 8999999999999999999999999999999999999877665555444 4467789999988765 5778999999999
Q ss_pred CCCce---EEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe
Q 009188 389 REAKV---ERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG 464 (540)
Q Consensus 389 ~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 464 (540)
..... .....|..+...++|+|.. .+|++.+.|..|.+||.+.. .....+.... + +....++++|.+|+.|
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~~-P---lstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYSH-P---LSTVAFSECGTYLCAG 268 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccceeeecC-C---cceeeecCCceEEEee
Confidence 98865 3334688899999999955 67788899999999999865 4444333222 1 3344558999999999
Q ss_pred eCCCcEEEEECCC-CceeEeecCCCCCeEEEEeCCC
Q 009188 465 SEDSQVYIWHRAS-CDLIGALPGHSGAVNCVSWNPA 499 (540)
Q Consensus 465 s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~ 499 (540)
+..|.|+.||++. ..++..+..|...|++++|-|.
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 9999999999876 5678999999999999999875
No 153
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=6.2e-22 Score=166.55 Aligned_cols=288 Identities=13% Similarity=0.175 Sum_probs=198.6
Q ss_pred CCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec-CCCCCeEEEEECcCCCeEEEeeCC
Q 009188 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS-GHQKPVSCVSWSSDDQQLLTCGVE 297 (540)
Q Consensus 219 ~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d 297 (540)
.|+.+..++.+|.+.|+++.|..+++ |.+|..-|.|.+|++.+. .....+. .|...|+.+.--|+ ..+.+-+.|
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~---r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd 76 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE---RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRD 76 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecC---ccchhhhhhccceeeceeecCC-cchhhcCCC
Confidence 35677788889999999999998875 999999999999999865 3333455 56778888888886 578888999
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEec-----CCC---E-EEEEeCCC-cEEEEecCCceEEEee----ccccceE
Q 009188 298 EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHP-----DRK---W-IFSGANDK-SICMWELGGKELECWK----GQRTLKI 363 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~-l~~~~~dg-~i~iwd~~~~~~~~~~----~~~~~~v 363 (540)
+.+.+|++.-+..+..-. -.+.++-|.+ +++ . ++.-+... .+.+-|.......... ....+.+
T Consensus 77 ~~L~lw~ia~s~~i~i~S---i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 77 PLLILWTIAYSAFISIHS---IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred ceEEEEEccCcceEEEee---eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 999999997755443221 2223333322 111 1 11111100 1222222211111111 1222345
Q ss_pred EEEEEcc-CC--CEEEEEecCCeEEEEECCCce------------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 364 SDLEVTS-DG--KQIITMCKESALLLLDREAKV------------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 364 ~~i~~~~-~~--~~l~~~~~d~~i~~~d~~~~~------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
.+..+.. ++ -.+++|..+|.+.+||+.++. .....|..++.++.+.+.-..=++|+.+..+..|+
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 5555432 22 345678899999999998852 23345788999999998777777888888899998
Q ss_pred ecCCc--eee-eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEE
Q 009188 429 IEGEV--KLV-AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLA 505 (540)
Q Consensus 429 ~~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 505 (540)
+.... -.+ .........+..++. -||++++|+++.|+.|+||+.++.+++..++-|.+.|++++|+|+.+ ++|
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrI---RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmA 309 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRI---RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMA 309 (323)
T ss_pred eccccCcccccceEEecCCCccceEE---ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhh
Confidence 86431 111 111111222222333 68999999999999999999999999999999999999999999976 999
Q ss_pred EEeCCCcEEEecC
Q 009188 506 SASDDRTIRIWGL 518 (540)
Q Consensus 506 s~~~Dg~i~iw~~ 518 (540)
++|.|+.|-+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 9999999999986
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.1e-20 Score=159.74 Aligned_cols=250 Identities=19% Similarity=0.297 Sum_probs=180.8
Q ss_pred EecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe-----EEEEeecCCCcEEEEEEecCCCEEEEEeCCC-cEEE
Q 009188 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN-----CLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-SICM 344 (540)
Q Consensus 271 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i 344 (540)
.+++|.+.|++++|+.||++|++++.|++|++|++++-. +++.- ..-+-.+.+.|.||.+-+++....| ++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 578999999999999999999999999999999997632 22211 1122567889999988776655544 7999
Q ss_pred EecCCce-----E-------EEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe-ecCCceeEEEEcCC
Q 009188 345 WELGGKE-----L-------ECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRD 411 (540)
Q Consensus 345 wd~~~~~-----~-------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~i~~~~~s~~ 411 (540)
|.+..++ . ..+...|...+.++-...++.++++++.|..|.+|+.++.....+ .....-...++||+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCC
Confidence 9873211 1 112334445677777888899999999999999999997764444 34455677899999
Q ss_pred CCEEEEEecCCeEEEEEec---CC----ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-------
Q 009188 412 NKFLLVNLLNQEIHLWNIE---GE----VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS------- 477 (540)
Q Consensus 412 ~~~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~------- 477 (540)
|+++++++-.-.+++|.+- .+ ...+..+++|...+ .+..++++...+++.|.||+++|||+.-
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---eeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999862 11 12345677888763 3344489999999999999999999752
Q ss_pred CceeEeec----CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 478 CDLIGALP----GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 478 ~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
.+.+++.. .-.+....++.+|.+. .|+ .+....++++..++|+....
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA-~s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGD-SLA-VSFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCc-EEE-eecCCceEEEEcccCccchh
Confidence 12222221 1223344899999996 444 44455799999998876543
No 155
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.3e-21 Score=181.57 Aligned_cols=261 Identities=16% Similarity=0.250 Sum_probs=188.2
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEee-----cCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD-----LNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
.++..|.+.|..++|+|....|++|+.||++.+|++. .....+++.++.+|.++|.|++..+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3788899999999999999999999999999999993 23446788999999999999999999999999999999
Q ss_pred EEEEECCCC----------eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecccc-ceEEEEEE
Q 009188 300 VRRWDVSSG----------NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRT-LKISDLEV 368 (540)
Q Consensus 300 i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~ 368 (540)
|+.|++... .....+.+|...++.+++++....|++++.||+++.|+........+..... ....++.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 999965421 2345677999999999999999999999999999999986544422211111 11222222
Q ss_pred ccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc--C--
Q 009188 369 TSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK--R-- 444 (540)
Q Consensus 369 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~-- 444 (540)
.... . ...++...-+.-.++++... .....+.... .
T Consensus 448 ~ss~--~-------------------------------------a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 448 TSSR--P-------------------------------------AHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPR 487 (577)
T ss_pred ccch--h-------------------------------------Hhhhhhcccccccchhhhhh-hheeeccccCCCccc
Confidence 1110 0 11111111111122222211 1111111000 0
Q ss_pred CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 445 SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 445 ~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
....+....+.|.+.+.+++.+|+.|+++|..++.+++....|...++++++.|+|. +|++++.||.|++|++....+.
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchhee
Confidence 001122223367788999999999999999999999999999999999999999997 9999999999999999877766
Q ss_pred cc
Q 009188 525 RK 526 (540)
Q Consensus 525 ~~ 526 (540)
..
T Consensus 567 ~e 568 (577)
T KOG0642|consen 567 LE 568 (577)
T ss_pred ec
Confidence 54
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=7.9e-21 Score=171.86 Aligned_cols=252 Identities=13% Similarity=0.248 Sum_probs=195.1
Q ss_pred EEEEecCCCCCeEEEEECcCC--CeEEEeeCCCcEEEEECCCC----eEEEEeecCCCcEEEEEEec-CCCEEEEEeCCC
Q 009188 268 LKHKLSGHQKPVSCVSWSSDD--QQLLTCGVEEAVRRWDVSSG----NCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDK 340 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 340 (540)
.......+.+.|++++|+|.. +++++|..-|.|-+||+.+. .-+..+..|..+|.++.|+| +...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 344566788999999999954 57888889999999999532 34667788999999999999 556899999999
Q ss_pred cEEEEecCCceEEEeecc--ccceEEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCCC-CE
Q 009188 341 SICMWELGGKELECWKGQ--RTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRDN-KF 414 (540)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~ 414 (540)
+|++-|+++.....+... ....+.++.++.+...++.+..-|...+||.++.. .....|...|++++++|.. .+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999987665544433 44467888899999999999988899999998866 3445577799999999965 77
Q ss_pred EEEEecCCeEEEEEecCCce---eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC----CCceeEeecCC
Q 009188 415 LLVNLLNQEIHLWNIEGEVK---LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA----SCDLIGALPGH 487 (540)
Q Consensus 415 l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h 487 (540)
+++++.|++.+|||++.-.. +.-....|.. .+.+++++|.+..|++.+.|..|+|||.. .-.+..++. |
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-H 413 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-H 413 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccc---eeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-c
Confidence 89999999999999985311 1122223333 35566668888789999999999999983 344444444 3
Q ss_pred CC------CeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 488 SG------AVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 488 ~~------~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
.. ......|.|+.. +++.|-.-..|-|+|-+.+++.
T Consensus 414 n~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred cCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEe
Confidence 32 234567999885 9999999889999999988843
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=2.5e-20 Score=159.31 Aligned_cols=273 Identities=16% Similarity=0.261 Sum_probs=201.0
Q ss_pred hhcccccCCCCCCccccCCCcCcCCC-----Ccce---EEecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCC
Q 009188 194 EACMFHNSSDRDMSLYTDHQCGRDQI-----PSRT---LQILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNG 264 (540)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~ 264 (540)
.+.+++++.|+.+.+|+-........ ...+ .+.-.+|+-.|.++.|-| |..++.+++.|.++++||.++-
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl- 134 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL- 134 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc-
Confidence 34678889999999987554321111 1111 123457899999999999 5568889999999999998754
Q ss_pred ceEEEEEecCCCCCeEEEEECcC---CCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCE-EEEEeCCC
Q 009188 265 GVTLKHKLSGHQKPVSCVSWSSD---DQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKW-IFSGANDK 340 (540)
Q Consensus 265 ~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg 340 (540)
+....+ ...+.|++-+|+|- ..++|+|..+-.|++.|+.+|.+.+++.+|...|.++.|+|...+ |++|+.||
T Consensus 135 --Q~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 135 --QEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred --eeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 333333 24567888888883 457888888889999999999999999999999999999997664 67899999
Q ss_pred cEEEEecCC--ceEEE-------------eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee-----cC
Q 009188 341 SICMWELGG--KELEC-------------WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE-----ED 400 (540)
Q Consensus 341 ~i~iwd~~~--~~~~~-------------~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~ 400 (540)
.|++||++. +.... ....|.+.+..++|+.++.++++.+.|..+++|+...+...... ++
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n 291 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN 291 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccc
Confidence 999999963 22221 12345668999999999999999999999999998876522221 11
Q ss_pred Cc---eeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC
Q 009188 401 QT---ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 401 ~~---i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
.. -..+. +-+...++.--.++.+.++++-.+ ..++.+..|.. .+.+++..++-....+|..|+.|+.|-.
T Consensus 292 ~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k---~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 292 QTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLK---RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccceEEEe-ecccceEEEEecCCeEEEEEccCc-eEEEeeecccc---eeeEEeecCchhhhhccccCCccccccc
Confidence 11 11122 223344444445688999998777 77888888844 3556666888888999999999999976
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=9.1e-21 Score=172.96 Aligned_cols=272 Identities=13% Similarity=0.237 Sum_probs=204.5
Q ss_pred CcEEEEEeecCCceEEEEEecCCC--CCeEEEEECcCCCeEEEe--eCCCcEEEEECCCCe---EEEEeecCCCcEEEEE
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQ--KPVSCVSWSSDDQQLLTC--GVEEAVRRWDVSSGN---CLHVYEKAGLGLVSCG 325 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~ 325 (540)
..++|||....... ..+..|+ ..+.+++|+.... |+++ +.|..+++|.- .|+ ....-+.....-.|++
T Consensus 12 d~~kl~D~s~~~~~---~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 12 DKTKLSDFSDLETK---SEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred CceEEeecccccCc---cccccCCCCCcceeeeccccce-EEEeecCCceeEEEecc-cCCCCccceeeccccchHHHHh
Confidence 46999998754222 2222222 3489999987654 5444 45777999974 333 2222223333556666
Q ss_pred EecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEee--cCCc
Q 009188 326 WHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIE--EDQT 402 (540)
Q Consensus 326 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~--~~~~ 402 (540)
......++++|+..+.|+|||++.+.+......|...|+++.++....++++++..|.|.+....++. ...+. ....
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence 66667899999999999999999888888888888999999999999999999999999999998876 22233 2456
Q ss_pred eeEEEEcCCCCEE-EEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee
Q 009188 403 ITSFSLSRDNKFL-LVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI 481 (540)
Q Consensus 403 i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 481 (540)
+.-+.++|..+++ .+++.+|.|.+||+.+..........|..+...| ||...+..++++.+.|..|++||..+.+..
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi--cfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI--CFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc--eecCCccceEEEecccceEEEeeccccccc
Confidence 6789999987654 5678899999999998755555556677765444 454567789999999999999999988877
Q ss_pred EeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc--ccCCCce
Q 009188 482 GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK--DCHSNGV 533 (540)
Q Consensus 482 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~--~~~~~~v 533 (540)
..+. ...+...++|+++|. +|+.|+..|.|..||++..+..-. ..|...|
T Consensus 245 ~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV 296 (673)
T KOG4378|consen 245 DRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV 296 (673)
T ss_pred ceee-ecCCcceeeecCCce-EEEeecCCceEEEEecccCCCCceEeeecccce
Confidence 7776 567899999999995 999999999999999997654432 4444443
No 159
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.8e-21 Score=177.31 Aligned_cols=297 Identities=22% Similarity=0.340 Sum_probs=237.0
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc--CCCeEEEeeCCCcE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCGVEEAV 300 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i 300 (540)
....|.+|.+-|..+.|+..|..|++||.|..|.+||+.... ....-..+|...|..-.|.| +...+++++.||.+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 446788899999999999999999999999999999998653 33344568988888888887 45789999999999
Q ss_pred EEEECCC-CeE--EEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceE----EEeecccc--ceEEEEEEcc
Q 009188 301 RRWDVSS-GNC--LHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKEL----ECWKGQRT--LKISDLEVTS 370 (540)
Q Consensus 301 ~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~--~~v~~i~~~~ 370 (540)
++=.+.. +.+ ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++.... .+...... ....+++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9877644 322 34566788999999999954 5788999999999999975332 21122222 2567888888
Q ss_pred CCC-EEEEEecCCeEEEEECCCceEE--------E------eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc--
Q 009188 371 DGK-QIITMCKESALLLLDREAKVER--------Y------IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV-- 433 (540)
Q Consensus 371 ~~~-~l~~~~~d~~i~~~d~~~~~~~--------~------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-- 433 (540)
... .+++++.|..+++||.+.-... + ......|++++++.++.-++++..|-.|+++.-..+.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 775 7899999999999997653211 1 1234578999999999999999999999999543210
Q ss_pred ---------eeeeE-eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCE
Q 009188 434 ---------KLVAK-YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHM 503 (540)
Q Consensus 434 ---------~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 503 (540)
..+.. +++|....++-.+-|++|...|+++||.-|.|.||+-.+++.+.-+.+...-|+|+.-+|.-+ +
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P-v 450 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP-V 450 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc-h
Confidence 22333 889998888777889999999999999999999999999999999988777999999999998 9
Q ss_pred EEEEeCCCcEEEecCCCCC
Q 009188 504 LASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 504 l~s~~~Dg~i~iw~~~~~~ 522 (540)
|||+|-|..|+||...+.+
T Consensus 451 LAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hhccCCccceeeecCCccc
Confidence 9999999999999985543
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=166.62 Aligned_cols=211 Identities=19% Similarity=0.339 Sum_probs=161.2
Q ss_pred EEecCCCCCeEEEEECcCC--CeEEEeeCCCcEEEEECCC----------------CeEEEEeecCCCcEEEEEEec-CC
Q 009188 270 HKLSGHQKPVSCVSWSSDD--QQLLTCGVEEAVRRWDVSS----------------GNCLHVYEKAGLGLVSCGWHP-DR 330 (540)
Q Consensus 270 ~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~-~~ 330 (540)
....+|.+.++.+.-++-+ .+.++-+..|.|.||++.. .+++.++.+|...-..++|+| ..
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3445788888888877654 4556667889999999852 346778888888889999999 22
Q ss_pred CEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcC
Q 009188 331 KWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSR 410 (540)
Q Consensus 331 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~ 410 (540)
..+++|..-+.|++|...++.... ....+..|...|-.++|||
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~v-------------------------------------d~~Pf~gH~~SVEDLqWSp 267 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKV-------------------------------------DQRPFTGHTKSVEDLQWSP 267 (440)
T ss_pred cccccCccccceEeeeeccCceee-------------------------------------cCccccccccchhhhccCC
Confidence 357788777889999875433211 0122334677788888988
Q ss_pred CC-CEEEEEecCCeEEEEEecCCc-eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC---CceeEeec
Q 009188 411 DN-KFLLVNLLNQEIHLWNIEGEV-KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS---CDLIGALP 485 (540)
Q Consensus 411 ~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~ 485 (540)
.. ..|++|+.||+|+|||++... +.....+.|...+.+|.+ +.+..+||+|+.||+++|||++. ++++..++
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW---nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW---NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc---cCCcceeeecCCCceEEEEEhhhccCCCcceeEE
Confidence 54 678889999999999999762 222333677776555544 66667999999999999999875 67889999
Q ss_pred CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 486 GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 486 ~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
-|..+|+++.|+|.....|+++|.|..|.+||+.-
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999999998877999999999999999864
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=163.99 Aligned_cols=206 Identities=15% Similarity=0.240 Sum_probs=167.1
Q ss_pred ecccCcCcEEEEEEecCCC--eEEEEeCCCcEEEEEeecC-------------CceEEEEEecCCCCCeEEEEECcC-CC
Q 009188 226 ILQGHTDEVWFLQFSHNGK--YLASSSNDRSAIIWEVDLN-------------GGVTLKHKLSGHQKPVSCVSWSSD-DQ 289 (540)
Q Consensus 226 ~l~~h~~~V~~~~~sp~g~--~l~tg~~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~s~~-~~ 289 (540)
..-+|.+.|+.+.-++-|+ +.|+=+..|.|+||++... ...+++.++.+|.+.=+.++|||- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 3446888899888887554 5566678899999997521 234567788999999999999993 33
Q ss_pred eEEEeeCCCcEEEEECCCCeEE---EEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCce--EEEeeccccceE
Q 009188 290 QLLTCGVEEAVRRWDVSSGNCL---HVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKE--LECWKGQRTLKI 363 (540)
Q Consensus 290 ~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v 363 (540)
.|++|..-+.|++|...+|.-. ..+.+|...|-.++|+|. ...|++|+.||+|+|||++.+. .......|...|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 5788888888999999887532 345579999999999994 5589999999999999998752 222336666799
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCce-----EEEeecCCceeEEEEcCC-CCEEEEEecCCeEEEEEecC
Q 009188 364 SDLEVTSDGKQIITMCKESALLLLDREAKV-----ERYIEEDQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~ 431 (540)
+.+.|+.+-.+|++|+.||++.+||++.-. ..+..|..+|+++.|+|. ...|++++.|..|.+||+..
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999999999999999999998744 577789999999999995 47888899999999999964
No 162
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.1e-20 Score=172.74 Aligned_cols=206 Identities=17% Similarity=0.258 Sum_probs=157.4
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc--CCCeEEEeeCCCcEE
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCGVEEAVR 301 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 301 (540)
.+.|.||++-|+|++|+.+|.+|++||.|-.+.|||.-..+ .+...-.+|...|.++.|-| +++.+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc--eeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 46789999999999999999999999999999999986332 33334569999999999998 567899999999999
Q ss_pred EEECCC----------CeEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceEEEe----------ecccc
Q 009188 302 RWDVSS----------GNCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKELECW----------KGQRT 360 (540)
Q Consensus 302 iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~ 360 (540)
++|+.. ......+..|...|..++-.|++ +.+.+++.||+|+-+|++....... .....
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999974 23455566788889999999988 7889999999999999975221100 01112
Q ss_pred ceEEEEEEccCC-CEEEEEecCCeEEEEECCCce-------------------EEEee--c-----------CCceeEEE
Q 009188 361 LKISDLEVTSDG-KQIITMCKESALLLLDREAKV-------------------ERYIE--E-----------DQTITSFS 407 (540)
Q Consensus 361 ~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~-------------------~~~~~--~-----------~~~i~~~~ 407 (540)
....++.++|.. .+|++|+.+-..++||.+... ...+. | ...++-++
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 356788888865 568888999999999943211 11110 0 11256788
Q ss_pred EcCCCCEEEEEecCCeEEEEEecC
Q 009188 408 LSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 408 ~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
|+|+|.-+++.-....|+++|+..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecC
Confidence 999999999888888899999853
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=171.60 Aligned_cols=246 Identities=18% Similarity=0.332 Sum_probs=190.3
Q ss_pred CCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC
Q 009188 218 QIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE 297 (540)
Q Consensus 218 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 297 (540)
...+..+++++||++.|+|++|+.||+.+|+|+.|..|.+|+-...+.. --.|.+.|.|+.|+|-...|++++-.
T Consensus 40 ~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-----kYSH~D~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 40 TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-----KYSHNDAIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-----eeccCCeeeEeecCchHHHhhhcchh
Confidence 3346788999999999999999999999999999999999986543221 23699999999999999999998754
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe--eccccceEEEEEEccCC---
Q 009188 298 EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW--KGQRTLKISDLEVTSDG--- 372 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~--- 372 (540)
. .-+|........ .. .....+.+++|..||.+++.|-.+|+|.+-+-.+.+.... ..+...+|.+++|+|..
T Consensus 115 d-FglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 115 D-FGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred h-ccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence 3 678876543322 11 2345788999999999999999999999987755443333 34566799999999864
Q ss_pred --CEEEEEecCCeEEEEECCCceEE-EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEE
Q 009188 373 --KQIITMCKESALLLLDREAKVER-YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVI 449 (540)
Q Consensus 373 --~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 449 (540)
..+++.....++.++.+.+.... ...-.-...++.+-++|.+++.|+.|+.+.+|.-++ ..+.+.......++.+
T Consensus 192 ~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G--vrLGTvg~~D~WIWtV 269 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG--VRLGTVGEQDSWIWTV 269 (1081)
T ss_pred ccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC--eEEeeccccceeEEEE
Confidence 56777788888888888776533 334456678899999999999999999999997654 3444444444444444
Q ss_pred EeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 450 RSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
.. .|++++++.|+.||+|..|++.
T Consensus 270 ~~---~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 270 QA---KPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EE---ccCCceEEEEEccCeeehhhhH
Confidence 33 7899999999999999998854
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.3e-20 Score=172.35 Aligned_cols=242 Identities=17% Similarity=0.266 Sum_probs=188.7
Q ss_pred EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC--EEEEEeCCCcEEEE
Q 009188 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK--WIFSGANDKSICMW 345 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw 345 (540)
+...+.+|.+.|.+|+..|.|.+|++|+.||+|+||.+.+|.|++++. ..+.|.|++|+|.+. .|+++.. ..+.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEe
Confidence 445678999999999999999999999999999999999999999985 455899999999654 3443333 334444
Q ss_pred ecCCc-----------------------eE--------------EEeeccccceEEEEEEccCCCEEEEEecC---CeEE
Q 009188 346 ELGGK-----------------------EL--------------ECWKGQRTLKISDLEVTSDGKQIITMCKE---SALL 385 (540)
Q Consensus 346 d~~~~-----------------------~~--------------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---~~i~ 385 (540)
+..-+ .. .+....+...|+.+.|+..|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32100 00 11222344578999999999999988764 4688
Q ss_pred EEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE
Q 009188 386 LLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 386 ~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
+.++.... ..+....+.+.++.|+|...++++++ ...|++||+... ..++++...... +.....++.|.-|+.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq-elvKkL~tg~kw---iS~msihp~GDnli~ 624 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ-ELVKKLLTGSKW---ISSMSIHPNGDNLIL 624 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH-HHHHHHhcCCee---eeeeeecCCCCeEEE
Confidence 88887765 33445678899999999999999988 567999999765 555555444333 444455889999999
Q ss_pred eeCCCcEEEEECCCC-ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 464 GSEDSQVYIWHRASC-DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 464 ~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
|+.|+.+..+|+.-. ++.+++.-|...+++|+|++.-+ +++||++||++.|+.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence 999999999998754 67788999999999999999987 999999999999984
No 165
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.3e-19 Score=172.91 Aligned_cols=290 Identities=18% Similarity=0.238 Sum_probs=214.7
Q ss_pred ccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeec-CCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC
Q 009188 228 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDL-NGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 228 ~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
..|.-.++|.++||+++++|+|..||.|.+|.--. .........+.-|...|.+++|+++|.+|++||..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999996432 23334456677899999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee-----------ccccceEEEEEEccCCCEE
Q 009188 307 SGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK-----------GQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 307 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~~~v~~i~~~~~~~~l 375 (540)
+++ .+-++.-+++|..+.++||+...+....|..|.+....+....... .....-.+.++++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 998 6666777889999999999999999999999999887543322211 1123346788999988888
Q ss_pred EEEecCCeEEEEECCCceEEE----e---------ecCCceeEEEEcCCCCEEEEEec--------CC--eEEEEEecCC
Q 009188 376 ITMCKESALLLLDREAKVERY----I---------EEDQTITSFSLSRDNKFLLVNLL--------NQ--EIHLWNIEGE 432 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~~~~----~---------~~~~~i~~~~~s~~~~~l~~~~~--------dg--~i~i~d~~~~ 432 (540)
+..+..|.|.+||+-+..... . .....++.++.+..|.++++.-. || .+++|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 999999999999987754111 0 12235677888888999888542 33 4778877543
Q ss_pred c---eeeeEeeCCcCCeeEEEeeeccCCCc-EEEEeeCCCcEEEEECCCC----------ceeEeecCCCCCeEEEEeCC
Q 009188 433 V---KLVAKYKGHKRSRFVIRSCFGGLEQA-FIASGSEDSQVYIWHRASC----------DLIGALPGHSGAVNCVSWNP 498 (540)
Q Consensus 433 ~---~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~ 498 (540)
. .+........+..... .++.++... ..++++.||.++||-.... .+...-.-|..++++++|+.
T Consensus 441 ~kt~~L~T~I~~PH~~~~va-t~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVA-TIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred cceeEEEEEEecCCCceeEE-EEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 2 2222333222222333 333344333 8999999999999987322 22222223788999999999
Q ss_pred CCCCEEEEEeCCCcEEEecCCCC
Q 009188 499 ANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 499 ~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
||. ++++|.|++|.+||..+.
T Consensus 520 dGs--lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 520 DGS--LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CCc--EEEEecCCEEEEecCCCh
Confidence 995 778889999999999984
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=6.4e-20 Score=162.99 Aligned_cols=212 Identities=20% Similarity=0.282 Sum_probs=170.1
Q ss_pred EecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCc----eEEEEEecCCCCCeEEEEECcC-CCeEEEeeCCC
Q 009188 225 QILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGG----VTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEE 298 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg 298 (540)
-.+.||+++|..++|+| +...+|+||.|.+|.||.+..+.. .+....+.+|...|-.+.|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35679999999999999 566899999999999999875422 2456778999999999999995 46889999999
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc-cceEEEEEEccCCCEEEE
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR-TLKISDLEVTSDGKQIIT 377 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~ 377 (540)
+|.+||+.+|+.+-++. |...|.++.|+.||.+|++++.|..|+|||.+++++......| .......-|-.+|..+.+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999999988886 9999999999999999999999999999999998887766433 334556667788885555
Q ss_pred Ee---cCCeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeee
Q 009188 378 MC---KESALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVA 437 (540)
Q Consensus 378 ~~---~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 437 (540)
|. .+..+.+||..+-. .........|.---++++.+.+..++ .|+.|+.|.+......+.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~h 301 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVH 301 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeE
Confidence 54 56779999977643 33344556666667888887776554 599999999987643333
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5e-20 Score=160.87 Aligned_cols=270 Identities=14% Similarity=0.247 Sum_probs=198.6
Q ss_pred CeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc--CCCeEEEeeCCCcEEEEECCCCeEEEEe--ecCC-
Q 009188 244 KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCGVEEAVRRWDVSSGNCLHVY--EKAG- 318 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~- 318 (540)
..+|++-..|.|++||..++ .....+.++...++.+.|.. ....+.+|+.||+|++||+++......+ ..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 56888989999999999875 45677888888888999977 4678999999999999999986554333 3343
Q ss_pred CcEEEEEEecCCCEEEEEeC----CCcEEEEecCCce--EEEeeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCC
Q 009188 319 LGLVSCGWHPDRKWIFSGAN----DKSICMWELGGKE--LECWKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREA 391 (540)
Q Consensus 319 ~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~ 391 (540)
.+..+++.+-.++.+++|.. +-.|.+||++..+ +..+...|...|+++.|+|.. +.|++|+.||-+.+||+..
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 46667776667778887753 5579999997533 566777888899999999865 7889999999999999987
Q ss_pred ce-----EEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCC----------cCCeeEEEeeecc
Q 009188 392 KV-----ERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGH----------KRSRFVIRSCFGG 455 (540)
Q Consensus 392 ~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~~i~~~~~~ 455 (540)
.. ...+.+...|.++.|..++ +.+.+-+..++..+|+++.+. ....+... ....+.+.... .
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~ 275 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINEHS-P 275 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeeccc-C
Confidence 54 4556678889999999877 568888889999999998763 22222211 11223444333 2
Q ss_pred CCCcEEEEeeC-CCcEEEEECC---C---CceeEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 456 LEQAFIASGSE-DSQVYIWHRA---S---CDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 456 ~~~~~l~s~s~-dg~i~iwd~~---~---~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.+....+.++. -|...++-+. + .+.+..+.+ |...|+++.|...+. ++.|||.||.+.+|...
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEEEecC
Confidence 33444444443 5555555332 3 344556665 777889999987775 99999999999999953
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=154.97 Aligned_cols=266 Identities=19% Similarity=0.284 Sum_probs=202.5
Q ss_pred CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC-CeEEEeeCC-------CcEEEEECCCC---------eEEEE
Q 009188 251 NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVE-------EAVRRWDVSSG---------NCLHV 313 (540)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d-------g~i~iwd~~~~---------~~~~~ 313 (540)
.|+.|.+.+++.++.......+..|.+.|..++-+|-. +.|+++..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 36788888888776655666788889999999999955 455555432 23789988643 23334
Q ss_pred ee-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE-EE-e----eccccceEEEEEEcc--CCCEEEEEecCCeE
Q 009188 314 YE-KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL-EC-W----KGQRTLKISDLEVTS--DGKQIITMCKESAL 384 (540)
Q Consensus 314 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~-~----~~~~~~~v~~i~~~~--~~~~l~~~~~d~~i 384 (540)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..... .. . ...+....++-+|+| +|+.+++ ..|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcE
Confidence 43 3345899999999999998776 77899999964332 11 1 112344677888988 5555554 678999
Q ss_pred EEEECCCceE---EEeecCCceeEEEEcCCCC-EEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcE
Q 009188 385 LLLDREAKVE---RYIEEDQTITSFSLSRDNK-FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 385 ~~~d~~~~~~---~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 460 (540)
..||.++... ....|...+..+.|+|+.+ +|++|+.||.|++||.+....++..+.+|...+..+++- .....+
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn--~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN--PEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec--CccceE
Confidence 9999998662 2335778899999999874 677888999999999999889999999999988887764 446689
Q ss_pred EEEeeCCCcEEEEECCCC-----------------------------ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCC
Q 009188 461 IASGSEDSQVYIWHRASC-----------------------------DLIGALPGHSGAVNCVSWNPANPHMLASASDDR 511 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg 511 (540)
+.+|+.|..|.+|...+- ..+.++..|...|++++|+.-++.++||-|.||
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 999999999999964321 123456779999999999999999999999999
Q ss_pred cEEEecCCC
Q 009188 512 TIRIWGLKD 520 (540)
Q Consensus 512 ~i~iw~~~~ 520 (540)
.+.|=++..
T Consensus 354 RviIs~V~r 362 (370)
T KOG1007|consen 354 RVIISSVPR 362 (370)
T ss_pred eEEeecCCh
Confidence 999877764
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.1e-17 Score=166.94 Aligned_cols=292 Identities=27% Similarity=0.475 Sum_probs=228.2
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC-CCeEEEEE-CcCCC-eEEEeeC-CCcE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ-KPVSCVSW-SSDDQ-QLLTCGV-EEAV 300 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~-s~~~~-~l~s~~~-dg~i 300 (540)
..+.+|...|.++.+.+.+..++.++.|+.+.+|+..... .....+..+. ..+..+.+ ++++. .++..+. |+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 3567899999999999999999999999999999987553 2444555533 37777777 78887 5555444 9999
Q ss_pred EEEECCC-CeEEEEeecCCCcEEEEEEecCCCEEEEEeC-CCcEEEEecCCceEEEeeccccceEEEEEEccCCC-EEEE
Q 009188 301 RRWDVSS-GNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DKSICMWELGGKELECWKGQRTLKISDLEVTSDGK-QIIT 377 (540)
Q Consensus 301 ~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~ 377 (540)
.+|+... ......+..|...|..++|+|++..+++++. |+.+++|++...........+...+.+++++|++. .+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 9999988 7888889999999999999999998888885 99999999987666666666778999999999998 5555
Q ss_pred EecCCeEEEEECCCce-E--EEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeec
Q 009188 378 MCKESALLLLDREAKV-E--RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG 454 (540)
Q Consensus 378 ~~~d~~i~~~d~~~~~-~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 454 (540)
++.|+.+.+||..... . ....+.... ...|+|++.++++++.++.+++|+..........+.+|......+ .+
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~ 292 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV---AF 292 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE---EE
Confidence 5899999999887544 2 233444443 338999998999999999999999987644344445554443333 44
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCceeEeec--CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 455 GLEQAFIASGSEDSQVYIWHRASCDLIGALP--GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 455 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
.|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..+..++..|+.+.+|++....
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 6778888889999999999999888777665 7888899999943323344444688999999999877
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.6e-20 Score=162.96 Aligned_cols=243 Identities=17% Similarity=0.275 Sum_probs=182.6
Q ss_pred cCcCcEEEEEEecC----CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEE
Q 009188 229 GHTDEVWFLQFSHN----GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRW 303 (540)
Q Consensus 229 ~h~~~V~~~~~sp~----g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iw 303 (540)
.|......++|+-+ ..++|.||.-|.|+|.|+..+ +....+.+|...|+.+.++|+. ++++++|.|.+|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 37788889999874 348899999999999999866 6677889999999999999965 789999999999999
Q ss_pred ECCCCeEEEEee---cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe-------------------------
Q 009188 304 DVSSGNCLHVYE---KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW------------------------- 355 (540)
Q Consensus 304 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------------- 355 (540)
++++..|+..+. +|...|.++.|+++|.+|++++.|.++++|+++.++....
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 999999998875 6889999999999999999999999999999974322110
Q ss_pred ---eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce------------EEEe----ecCCce--eEEEEcCCCCE
Q 009188 356 ---KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV------------ERYI----EEDQTI--TSFSLSRDNKF 414 (540)
Q Consensus 356 ---~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~------------~~~~----~~~~~i--~~~~~s~~~~~ 414 (540)
...|...|.|+.|- |.++++-+-++.|..|....-. .... .....| ...+|+|-++.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 01111222233332 5788888889999999873211 0111 112222 34566778899
Q ss_pred EEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 415 LLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 415 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
|+.|...|.+++||++.......+--.|......++-..++.++.+|+...+|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999987644322222233333345555559999999999999999999964
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=3.6e-17 Score=163.34 Aligned_cols=289 Identities=27% Similarity=0.490 Sum_probs=224.8
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeC-CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCC-eEEEeeCCC
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSN-DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ-QLLTCGVEE 298 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg 298 (540)
......+.+|...|.+++|+|++.++++++. |+.+++|+.... .....+.+|...|.+++|+|++. .+++++.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 4677889999999999999999999998886 999999998753 45667778999999999999998 555558999
Q ss_pred cEEEEECCCCeEEE-EeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE-EEeeccccceEEEEEEccCCCEEE
Q 009188 299 AVRRWDVSSGNCLH-VYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL-ECWKGQRTLKISDLEVTSDGKQII 376 (540)
Q Consensus 299 ~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~ 376 (540)
.|++||...+.... .+..|.... ...|++++..+++++.|+.+++|++..... ......+...+.++.+.|++..++
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 300 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEE
Confidence 99999998888887 687887665 448999998999999999999999975443 222245567899999999999999
Q ss_pred EEecCCeEEEEECCCce--EEE--eecCCceeEEEEcCCCCEEEEE-ecCCeEEEEEecCCceeeeEeeCCcCCeeEEEe
Q 009188 377 TMCKESALLLLDREAKV--ERY--IEEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRS 451 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~--~~~--~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 451 (540)
+++.++.+.+||..+.. ... ..+...+..+.+.+++..++.+ ..++.+.+|+..... .......... ... .
T Consensus 301 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~~--~ 376 (466)
T COG2319 301 SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSN-VLS--V 376 (466)
T ss_pred EeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCce-EEE--E
Confidence 89989889999888765 222 2456678899994333556655 678889999998764 2222222222 222 2
Q ss_pred eeccCCCcEEEE-eeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 452 CFGGLEQAFIAS-GSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 452 ~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
.+ .++ ..+.. +..++.+.+|+............+...+....+.+++. .+++++.++.+++|+..+
T Consensus 377 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 377 SF-SPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK-SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EE-CCC-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCc-EEEEecCCCcEEEEeccC
Confidence 22 333 33444 78999999999998888777765547899999999886 888899999999999988
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=4.3e-19 Score=158.48 Aligned_cols=282 Identities=17% Similarity=0.262 Sum_probs=201.4
Q ss_pred cccccCCCCCCccccCCCcCcCC--CCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEee--------c---
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQ--IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD--------L--- 262 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~--------~--- 262 (540)
.+++++.|..+.+|.-....... ..-+.+..|..|...|+++.|+|+|..||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 45778889999999755433222 3445678899999999999999999999999999999999865 2
Q ss_pred --CCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC
Q 009188 263 --NGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340 (540)
Q Consensus 263 --~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 340 (540)
...+.....+.+|...|..++|+|++.++++++.|.++++||+..|.....+..|...+..++|.|-++++++-+.|.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 223566778889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cEEEEecCCceEEEeec----------c-------------ccceEEEEEEccCCCEEEEEec----CC-----eEEEEE
Q 009188 341 SICMWELGGKELECWKG----------Q-------------RTLKISDLEVTSDGKQIITMCK----ES-----ALLLLD 388 (540)
Q Consensus 341 ~i~iwd~~~~~~~~~~~----------~-------------~~~~v~~i~~~~~~~~l~~~~~----d~-----~i~~~d 388 (540)
..+.+++.......... . -..-...++|+|+|..+++... .+ +.++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfs 267 (434)
T KOG1009|consen 188 HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFS 267 (434)
T ss_pred ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeec
Confidence 77777664322211100 0 0112455788999999886542 22 234444
Q ss_pred CCC---ceEEEeecCCceeEEEEcC------------------CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCee
Q 009188 389 REA---KVERYIEEDQTITSFSLSR------------------DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRF 447 (540)
Q Consensus 389 ~~~---~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 447 (540)
... +.........+...+.++| -+-.+++++ .+.+++||.+........-.-|-...+
T Consensus 268 rk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iT 346 (434)
T KOG1009|consen 268 RKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAIT 346 (434)
T ss_pred cccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeec
Confidence 322 1122223333344444433 222344444 668999999876333333344555433
Q ss_pred EEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee
Q 009188 448 VIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI 481 (540)
Q Consensus 448 ~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 481 (540)
. ..|+++|.+++..|.||...+--+..+++-
T Consensus 347 D---iaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 347 D---IAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred c---eeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 3 344899999999999998887776665543
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=3.9e-21 Score=185.73 Aligned_cols=287 Identities=16% Similarity=0.262 Sum_probs=223.4
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
.++.+.||...|+|+.|...|.++++|+.|..++||..++. .+.....||.+.|+.++.+.+..++++++.|..|++
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 35567899999999999999999999999999999998765 677889999999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe----eccccceEEEEEEccCCCEEEEE
Q 009188 303 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW----KGQRTLKISDLEVTSDGKQIITM 378 (540)
Q Consensus 303 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~~~ 378 (540)
|.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+-...... .......+.++.+..++..++++
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999999999954 778999999999872111111 11122356777888888999999
Q ss_pred ecCCeEEEEECCCceEEEeecCCceeEEEEcCC-CCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCC
Q 009188 379 CKESALLLLDREAKVERYIEEDQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE 457 (540)
Q Consensus 379 ~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 457 (540)
+.++.-..|...... .+...+.-+..+.+ ..+.+++-.+-.+.+|++.++ .......+|....+++....+ +
T Consensus 335 s~d~ea~n~e~~~l~----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpf--n 407 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPF--N 407 (1113)
T ss_pred cCCcccccchhhHhh----hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCC--C
Confidence 999888777654321 00111111111111 145556666778889999877 778888899999888887654 4
Q ss_pred CcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 458 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
.....+++.||...|||+-.|.+++......+.+..-.|+++|. -++...+-|.++|.....++..
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt-s~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT-SIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc-eEecCCCCCceEEeccCCCccc
Confidence 46778899999999999999988866543346677788999996 6777777788999887665543
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=2.1e-17 Score=158.34 Aligned_cols=273 Identities=11% Similarity=0.147 Sum_probs=182.2
Q ss_pred EEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CCCcEEEEECC-CCeE--EEEeecCCCcEE
Q 009188 247 ASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VEEAVRRWDVS-SGNC--LHVYEKAGLGLV 322 (540)
Q Consensus 247 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~ 322 (540)
++...++.|.+|++...+.......+. +.+....++++|++++|++++ .++.|.+|++. +++. .... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 334668999999997545555555554 346677899999999987764 57889999986 3432 2222 2233567
Q ss_pred EEEEecCCCEEEEEeC-CCcEEEEecCC-ceE---EEeeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCce-EE
Q 009188 323 SCGWHPDRKWIFSGAN-DKSICMWELGG-KEL---ECWKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREAKV-ER 395 (540)
Q Consensus 323 ~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~-~~ 395 (540)
.++++|+++++++++. ++.|.+|+++. +.. .... ........++++|+++++++++ .++.|.+||+.+.. ..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999998888764 78999999963 211 1111 1223567788999999986655 56999999997622 11
Q ss_pred -------EeecCCceeEEEEcCCCCEEEEEec-CCeEEEEEecCC---ceeeeEeeCCc----CCeeEEEeeeccCCCcE
Q 009188 396 -------YIEEDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEGE---VKLVAKYKGHK----RSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 396 -------~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~~~~----~~~~~i~~~~~~~~~~~ 460 (540)
..........+.|+|++++++++.. ++.|.+|++... ...+..+.... ....... +.++|++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD-IHITPDGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee-EEECCCCCE
Confidence 1123455678999999999988876 899999999732 12333332211 1112222 233899999
Q ss_pred EEEeeC-CCcEEEEECCCCceeEeecCC---CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC--CCCc
Q 009188 461 IASGSE-DSQVYIWHRASCDLIGALPGH---SGAVNCVSWNPANPHMLASASDDRTIRIWGLK--DLNV 523 (540)
Q Consensus 461 l~s~s~-dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~--~~~~ 523 (540)
++++.. ++.|.+|++........+.++ ......+.++|+|++++++...+++|.+|++. ++.+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 988854 789999998654321122222 12456899999998555555569999999874 4444
No 175
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.9e-19 Score=160.50 Aligned_cols=242 Identities=14% Similarity=0.213 Sum_probs=162.2
Q ss_pred EEEEecCCCeEEEEeCC---CcEEEEEeecCCceEEEEEecCCC----CCeEEEEECc-------CCCeEEEeeCCCcEE
Q 009188 236 FLQFSHNGKYLASSSND---RSAIIWEVDLNGGVTLKHKLSGHQ----KPVSCVSWSS-------DDQQLLTCGVEEAVR 301 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~h~----~~v~~l~~s~-------~~~~l~s~~~dg~i~ 301 (540)
.+..-|+.++++++-.+ ..+.+|=.+..... .+..|. ....|+.|.. .|+++|.|+.|..|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n----lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN----LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc----eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 34456767777766432 34445544432211 111222 3346777753 368999999999999
Q ss_pred EEECCCCeE---EE------------------EeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCceEEEeeccc
Q 009188 302 RWDVSSGNC---LH------------------VYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQR 359 (540)
Q Consensus 302 iwd~~~~~~---~~------------------~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 359 (540)
|||+.--.. .. .-.+|+..|..++|+.. .+.|++|+.|.+|++||+.++++.....++
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 999863211 00 11257777888888874 457899999999999999999888877777
Q ss_pred cceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe
Q 009188 360 TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 360 ~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 439 (540)
...|.++.|+|.. ..+|++|+.|+++.+.|.+.....-..+
T Consensus 286 ~k~Vq~l~wh~~~---------------------------------------p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 286 GKKVQTLEWHPYE---------------------------------------PSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred CCceeEEEecCCC---------------------------------------ceEEEeccccceEEeeeccCccccCceE
Confidence 7777777776642 3445555556666666655321111111
Q ss_pred eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC-ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 440 ~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
+.. +.+-.+.+-. .....++++..||+|+-+|+++. +++.++++|.++|.++++++..+.+++|+|.|+.|++|++
T Consensus 327 k~~-g~VEkv~w~~--~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 327 KFD-GEVEKVAWDP--HSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred Eec-cceEEEEecC--CCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 111 1111222322 23356788899999999998874 8999999999999999999998899999999999999998
Q ss_pred CCCCc
Q 009188 519 KDLNV 523 (540)
Q Consensus 519 ~~~~~ 523 (540)
..-..
T Consensus 404 ~~~~~ 408 (463)
T KOG0270|consen 404 DVDSP 408 (463)
T ss_pred cCCCC
Confidence 75443
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.1e-20 Score=187.51 Aligned_cols=246 Identities=16% Similarity=0.240 Sum_probs=193.0
Q ss_pred cCcEEEEEEecCCCe----EEEEeCCCcEEEEEeec---CCceEEEEEecCCCCCeEEEEECcCCC-eEEEeeCCCcEEE
Q 009188 231 TDEVWFLQFSHNGKY----LASSSNDRSAIIWEVDL---NGGVTLKHKLSGHQKPVSCVSWSSDDQ-QLLTCGVEEAVRR 302 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~----l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~i 302 (540)
...-+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++... .||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346678999997775 88899999999999875 445566777889999999999999665 9999999999999
Q ss_pred EECCCCeEEEEee--cCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCceEEEeeccc--cceEEEEEEccCC-CEEE
Q 009188 303 WDVSSGNCLHVYE--KAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQR--TLKISDLEVTSDG-KQII 376 (540)
Q Consensus 303 wd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~l~ 376 (540)
||+.+.+.-..+. ...+.|.+++|+.. ...|++++.+|.+.|||++.++.......+ ...+..++|+|++ ..++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755444432 24578999999984 457788999999999999876433322222 2458899999987 4455
Q ss_pred EEecC---CeEEEEECCCce---EEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEE
Q 009188 377 TMCKE---SALLLLDREAKV---ERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVI 449 (540)
Q Consensus 377 ~~~~d---~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 449 (540)
+++.| -.|.+||++... ..+..|...|.++.|++.+ .++++++.|+.|.+|+.+++ +.+..+.......+.+
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv 302 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDV 302 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeee
Confidence 55544 358999987644 5556899999999999966 89999999999999999987 7788877766666665
Q ss_pred EeeeccCCCcEEEEeeCCCcEEEEECCCCc
Q 009188 450 RSCFGGLEQAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
.+| ..+-..+++++-||.|-||.+.+..
T Consensus 303 ~w~--pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 QWC--PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eec--CCCcchhhhheeccceeeeeeecCC
Confidence 555 3455689999999999999987654
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=3.2e-18 Score=172.47 Aligned_cols=300 Identities=16% Similarity=0.189 Sum_probs=209.2
Q ss_pred CCCCcceEEecccCcCcEEEEEEecCC-CeEEEEeCCCcEEEEEeecC----CceEEEEEecCCCCCeEEEEECcCCCeE
Q 009188 217 DQIPSRTLQILQGHTDEVWFLQFSHNG-KYLASSSNDRSAIIWEVDLN----GGVTLKHKLSGHQKPVSCVSWSSDDQQL 291 (540)
Q Consensus 217 ~~~~~~~~~~l~~h~~~V~~~~~sp~g-~~l~tg~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l 291 (540)
+...+..+..+..|...|..++.++.. .+++|||.||+|++|+...- +......++..-...+.++...+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 355667788999999999999998755 99999999999999998631 2233444555567789999999999999
Q ss_pred EEeeCCCcEEEEECCCC-------eEEEEeecC-CCcEEEE-EEec-CCC-EEEEEeCCCcEEEEecCCceEEEe--ecc
Q 009188 292 LTCGVEEAVRRWDVSSG-------NCLHVYEKA-GLGLVSC-GWHP-DRK-WIFSGANDKSICMWELGGKELECW--KGQ 358 (540)
Q Consensus 292 ~s~~~dg~i~iwd~~~~-------~~~~~~~~~-~~~v~~~-~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~ 358 (540)
|.++.||.|++.++... .+.+....+ .+.+.++ +|.. .+. .++.+...+.|..||++....... ...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998752 112222222 2333333 3333 333 677888889999999976433221 223
Q ss_pred ccceEEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCCC---CEEEEEe--cCCeEEEEEec
Q 009188 359 RTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRDN---KFLLVNL--LNQEIHLWNIE 430 (540)
Q Consensus 359 ~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~---~~l~~~~--~dg~i~i~d~~ 430 (540)
..+.|++++.+|.+.++++|+..|.+.+||++-+. .....+..+++.+..+|-. ...++++ ..+.|.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 34589999999999999999999999999998876 2333456788888887743 3444444 47889999998
Q ss_pred CCceeeeEeeCC----------------cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee-------------
Q 009188 431 GEVKLVAKYKGH----------------KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI------------- 481 (540)
Q Consensus 431 ~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------------- 481 (540)
++........+. ......+.++. ...+.++.+|+.|..|+.||.......
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~ 1352 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYST 1352 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCcccccccccCccccccc
Confidence 763222211110 11122233333 445678999999999999996532110
Q ss_pred -----------------------------------Eee--------cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 482 -----------------------------------GAL--------PGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 482 -----------------------------------~~~--------~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
..+ ..|..+|+++++......++++++.||.|+||.
T Consensus 1353 ~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1353 NSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 136778999988766656999999999999995
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.3e-18 Score=170.91 Aligned_cols=289 Identities=18% Similarity=0.277 Sum_probs=204.4
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC---CCCeEEEEECc--CCCeEEEeeCCCcEEEE
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH---QKPVSCVSWSS--DDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h---~~~v~~l~~s~--~~~~l~s~~~dg~i~iw 303 (540)
+....-..+.|+|-...++++...-.|++||.+.+ +....+..+ ...|+.+.+-. |..++++|+.||.|+||
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~---~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG---RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccC---ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 33445677889998889999987789999999866 333333322 35688888865 55789999999999999
Q ss_pred ECC-C----CeEEEEeec-------CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE-eeccccceEEEEEEc-
Q 009188 304 DVS-S----GNCLHVYEK-------AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC-WKGQRTLKISDLEVT- 369 (540)
Q Consensus 304 d~~-~----~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~- 369 (540)
+-. + .+.+..+.+ ..+.-.-+.|.....+|++++.-..|+|||.....+.. ........++++.-+
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence 642 2 233332221 11111345787766777777778899999997654433 334444567777655
Q ss_pred cCCCEEEEEecCCeEEEEECCCce-----EEEeecCCc--eeEEEEcCCCC-EEEEEecCCeEEEEEecCC-ceeeeEee
Q 009188 370 SDGKQIITMCKESALLLLDREAKV-----ERYIEEDQT--ITSFSLSRDNK-FLLVNLLNQEIHLWNIEGE-VKLVAKYK 440 (540)
Q Consensus 370 ~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 440 (540)
..|+.+++|..||.|++||.+... .....|... |..+.+.+.|- .+++|+.+|.|++||++.. ........
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 346999999999999999987643 445556665 99999999774 5999999999999999984 12222222
Q ss_pred CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC-------CCCCeEEEEeCCCCCCEEEEEeCCCcE
Q 009188 441 GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-------HSGAVNCVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 441 ~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~Dg~i 513 (540)
.|......+++...+++...+|+|+. +.|.||++. |+.+..++. ..+.+.+++|+|..- ++|+|+.|.+|
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~-llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL-LLAAGSADSTV 1375 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH-hhhhccCCceE
Confidence 22211112555566788899999998 999999975 444444432 235789999999875 89999999999
Q ss_pred EEecCCCCCc
Q 009188 514 RIWGLKDLNV 523 (540)
Q Consensus 514 ~iw~~~~~~~ 523 (540)
.||.......
T Consensus 1376 ~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1376 SIYSCEKPRL 1385 (1387)
T ss_pred EEeecCCcCC
Confidence 9999877654
No 179
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.8e-18 Score=147.08 Aligned_cols=216 Identities=19% Similarity=0.367 Sum_probs=150.3
Q ss_pred cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC----eEEEEeecCCCcEEEEEEec--CCCEEEEEeCCCcEEEEe
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG----NCLHVYEKAGLGLVSCGWHP--DRKWIFSGANDKSICMWE 346 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 346 (540)
.+|.+-|.++.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 578899999999999999999999999999996543 56778889999999999977 688999999999999998
Q ss_pred cCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcC--CCCEEEEEecCCeE
Q 009188 347 LGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSR--DNKFLLVNLLNQEI 424 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i 424 (540)
-..... ..+....+.. .........|+.+.|.| -|-.+++++.||.+
T Consensus 90 E~~~~~---~~~~~~Wv~~----------------------------ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~l 138 (361)
T KOG2445|consen 90 EQEKSE---EAHGRRWVRR----------------------------TTLVDSRSSVTDVKFAPKHLGLKLAAASADGIL 138 (361)
T ss_pred eccccc---ccccceeEEE----------------------------EEeecCCcceeEEEecchhcceEEEEeccCcEE
Confidence 531110 0000001111 01112234556666666 34556666667777
Q ss_pred EEEEecCCcee-----e-------eEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-----CcEEEEECCC----CceeEe
Q 009188 425 HLWNIEGEVKL-----V-------AKYKGHKRSRFVIRSCFGGLEQAFIASGSED-----SQVYIWHRAS----CDLIGA 483 (540)
Q Consensus 425 ~i~d~~~~~~~-----~-------~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~----~~~~~~ 483 (540)
+||+......+ . .....+.....++.++..-....+||.|+.+ +.++||.... ...+.+
T Consensus 139 RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 139 RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 77765432111 1 1112344455566666444456778888876 5788887543 345678
Q ss_pred ecCCCCCeEEEEeCCCCC---CEEEEEeCCCcEEEecCCC
Q 009188 484 LPGHSGAVNCVSWNPANP---HMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 484 ~~~h~~~v~~l~~~~~~~---~~l~s~~~Dg~i~iw~~~~ 520 (540)
+.+|..+|++++|.|+-. ++||+++.|| |+||+++.
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 889999999999999742 4899999999 99999984
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=3.1e-18 Score=146.42 Aligned_cols=250 Identities=19% Similarity=0.348 Sum_probs=180.1
Q ss_pred cEEEEEEec--C-CCeEEEEeC----CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC-----CeEEEeeCCCcE
Q 009188 233 EVWFLQFSH--N-GKYLASSSN----DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD-----QQLLTCGVEEAV 300 (540)
Q Consensus 233 ~V~~~~~sp--~-g~~l~tg~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~l~s~~~dg~i 300 (540)
.++++.||. + +.+||.|+. .+.|.|-.++..........-..|.-+++.+.|.|+. .+||++ +..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeE
Confidence 677888883 2 447888874 4678888776443322222235788999999999976 355554 3469
Q ss_pred EEEECCCC--eE--EEE-----eecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc
Q 009188 301 RRWDVSSG--NC--LHV-----YEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 301 ~iwd~~~~--~~--~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 370 (540)
++|.+... +. ... -..+..++++..|+. +-+++.+++-|-+..|||+.++...
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~----------------- 186 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG----------------- 186 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-----------------
Confidence 99998742 11 111 123467899999998 7789999999999999999754110
Q ss_pred CCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEE
Q 009188 371 DGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVI 449 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 449 (540)
+-+...+.|..+|..++|...+ +.+++.+.||.+++||++......-.+.........+
T Consensus 187 --------------------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 187 --------------------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred --------------------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 0012344566667777777654 5677788888888888887644444444444344556
Q ss_pred EeeeccCCCcEEEEeeCCC-cEEEEECCC-CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 450 RSCFGGLEQAFIASGSEDS-QVYIWHRAS-CDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg-~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
+..+...+-+++|+-..|. .|.|.|++. +.++..+++|.+.|++++|.|.....|+|+|+|..+.+||+...
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 6777667778888877665 799999886 56789999999999999999998889999999999999999753
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=1.2e-17 Score=144.80 Aligned_cols=207 Identities=14% Similarity=0.173 Sum_probs=172.7
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
+.--..+|+|.+|++|+..+|.+.....|.||.....+..+..+++..|...|+.++|+|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345799999999999999999999999999998766688999999999999999999999999999999999999984
Q ss_pred C-C--eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE----EEeeccccceEEEEEEccCCCEEEEEe
Q 009188 307 S-G--NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL----ECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 307 ~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
. + +....+..+...++++.|+|.++.|++|+....|.+|=++...- ..+.....+.|.++.|+|++-.+++|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 3 34555667888999999999999999999999999988754321 233445556899999999999999999
Q ss_pred cCCeEEEEECCCce--------------------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc
Q 009188 380 KESALLLLDREAKV--------------------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV 433 (540)
Q Consensus 380 ~d~~i~~~d~~~~~--------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 433 (540)
.|+..+++..--+. .......+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999998632111 1111456789999999999999999999999999987653
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=5.2e-20 Score=178.00 Aligned_cols=246 Identities=17% Similarity=0.262 Sum_probs=204.8
Q ss_pred EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC
Q 009188 269 KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG 348 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 348 (540)
++.+.+|.+.|+|+.|...|.++++|+.|..++||..+++.++....+|.+.|+.++.+.++.++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceE------EEeecCCceeEEEEcCCCCEEEEEecCC
Q 009188 349 GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE------RYIEEDQTITSFSLSRDNKFLLVNLLNQ 422 (540)
Q Consensus 349 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~i~~~~~s~~~~~l~~~~~dg 422 (540)
.+.......+|.+.|++++|+|-. +.+.||++++||.+-... .......-+.++.|...+.-+++++.++
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999999965 778999999999883221 1123446677888888899999999999
Q ss_pred eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCC
Q 009188 423 EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH 502 (540)
Q Consensus 423 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 502 (540)
.-..|.+... ..+... .+.....+....+.+++-.+-.+++|++.+|.+.+.+.+|...+..+.++|-++.
T Consensus 339 ea~n~e~~~l-------~~~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 339 EARNHEFEQL-------AWRSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ccccchhhHh-------hhhccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 8888876421 001100 1111111222256677777889999999999999999999999999999999998
Q ss_pred EEEEEeCCCcEEEecCCCCCccccc
Q 009188 503 MLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 503 ~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
+..++|.||...|||+-.|..++.+
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceee
Confidence 8899999999999999988877653
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.9e-17 Score=137.03 Aligned_cols=271 Identities=15% Similarity=0.204 Sum_probs=192.8
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecC-------CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN-------GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD 304 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 304 (540)
..|.+-+++|.+++|++|+.+|.|.+..+..- .....+...++|.++|+.++|. ..+|++|+ ||.|+=|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 35667789999999999999999999988631 1223445568999999999998 45777776 59999998
Q ss_pred CCCCeE------EEEee-------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC
Q 009188 305 VSSGNC------LHVYE-------KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 305 ~~~~~~------~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
...... +...+ ..-..|+++...|..+.++.++.|+.++.||++++++......|...+.++.-...
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 754221 11111 11246889999998888888889999999999999999999999999999999777
Q ss_pred CCEEEEEecCCeEEEEECCCce-EEEeec-----------CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe
Q 009188 372 GKQIITMCKESALLLLDREAKV-ERYIEE-----------DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~-~~~~~~-----------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 439 (540)
...+++|+.||++++||.++.+ ...++. ...|.+++ -+..++++|+ ...+.+|.++.. .+...|
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrss-e~t~vf 243 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSS-ESTCVF 243 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCC-CceEEE
Confidence 7889999999999999999976 222221 12233443 3556666655 667999999876 444444
Q ss_pred eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 440 ~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
.-... +..+ . .....+++++..+.|.-|.+. |.+....+......++..|+..--.++..+|..+.+.|+
T Consensus 244 pipa~-v~~v--~---F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 PIPAR-VHLV--D---FVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ecccc-eeEe--e---eecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 33222 1111 1 244678888888899999764 555555555555667777754332366677777777775
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1e-17 Score=149.16 Aligned_cols=227 Identities=15% Similarity=0.260 Sum_probs=169.3
Q ss_pred EecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCCC-------eEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCc
Q 009188 271 KLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSSG-------NCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKS 341 (540)
Q Consensus 271 ~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 341 (540)
.+.+|.++|..++|+| +...||+||.|.+|.||.+..+ +.+..+.+|...|-.++|+| -.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999999 5678999999999999998764 45778889999999999999 4568899999999
Q ss_pred EEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEE--eecC-CceeEEEEcCCCCEEEEE
Q 009188 342 ICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY--IEED-QTITSFSLSRDNKFLLVN 418 (540)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~~~ 418 (540)
|.+||+.+++...... |...|.+++|+.||..+++.+.|..|++||.+++.... ..|. .....+.|-.++.++-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999887666555 77799999999999999999999999999999987332 2333 345667788888866555
Q ss_pred e---cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEE-EeeCCCcEEEEECCCCcee-EeecC--CCCCe
Q 009188 419 L---LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA-SGSEDSQVYIWHRASCDLI-GALPG--HSGAV 491 (540)
Q Consensus 419 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~-~~~~~--h~~~v 491 (540)
. .+..+.+||...-..++....-.... .+-.-|+.++.++++ +|-.|+.|+-|.+....+. +-+.. ...+-
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQ 312 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQ 312 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcc
Confidence 4 36789999987654443332222222 234455677777665 5667999999998876542 22221 22344
Q ss_pred EEEEeCCCC
Q 009188 492 NCVSWNPAN 500 (540)
Q Consensus 492 ~~l~~~~~~ 500 (540)
..+.|.|..
T Consensus 313 RG~g~mPKR 321 (472)
T KOG0303|consen 313 RGMGFMPKR 321 (472)
T ss_pred ccccccccc
Confidence 556666643
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=3e-17 Score=142.52 Aligned_cols=267 Identities=15% Similarity=0.208 Sum_probs=190.4
Q ss_pred hhcccccCCCCCCccccCCCcCcC-----CCCcceEEecc-cCcCcEEEEEEe-------cCCCeEEEEeCCCcEEEEEe
Q 009188 194 EACMFHNSSDRDMSLYTDHQCGRD-----QIPSRTLQILQ-GHTDEVWFLQFS-------HNGKYLASSSNDRSAIIWEV 260 (540)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~h~~~V~~~~~s-------p~g~~l~tg~~dg~i~iwd~ 260 (540)
..|++..+.+..+.+|....-... ..+.+....++ -..+.|...+|- |+..++|+.+.+.-|++||.
T Consensus 61 GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda 140 (406)
T KOG2919|consen 61 GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA 140 (406)
T ss_pred CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeec
Confidence 368888888888888764332111 11111111111 134568888886 57789999999999999998
Q ss_pred ecCCceEEEEEec--CCCC---CeEEEEECcCCCeEEEeeCCCcEEEEEC-CCCeEEEEe--e-----cCCCcEEEEEEe
Q 009188 261 DLNGGVTLKHKLS--GHQK---PVSCVSWSSDDQQLLTCGVEEAVRRWDV-SSGNCLHVY--E-----KAGLGLVSCGWH 327 (540)
Q Consensus 261 ~~~~~~~~~~~~~--~h~~---~v~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~--~-----~~~~~v~~~~~~ 327 (540)
-++. ....+. .|.+ ...+++|+|||.+|++| ....|+++|+ +.|+....+ . +..+-+.+++|+
T Consensus 141 ftG~---lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~s 216 (406)
T KOG2919|consen 141 FTGK---LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFS 216 (406)
T ss_pred cccc---cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeecc
Confidence 8763 333332 3433 35689999999999875 6788999999 555432211 1 235678899999
Q ss_pred c-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCceEE---Eeec---
Q 009188 328 P-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREAKVER---YIEE--- 399 (540)
Q Consensus 328 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~---~~~~--- 399 (540)
| +...+++|+....+-||.-.++........|.+.|+.+.|.++|+.|.+|. .+..|..||++..... ...|
T Consensus 217 P~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~ 296 (406)
T KOG2919|consen 217 PMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGD 296 (406)
T ss_pred CCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccC
Confidence 9 556899999999999999888888888889999999999999999999988 4788999999886522 1222
Q ss_pred CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC
Q 009188 400 DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED 467 (540)
Q Consensus 400 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d 467 (540)
...-.-+...|++++|++|+.+|.|++||+++....+..+..+...+..+.. +|--.++++++..
T Consensus 297 TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl---nP~mpilatssGq 361 (406)
T KOG2919|consen 297 TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL---NPIMPILATSSGQ 361 (406)
T ss_pred ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec---CcccceeeeccCc
Confidence 2222345667899999999999999999999865666666666665444433 5666677776643
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.2e-17 Score=142.77 Aligned_cols=248 Identities=17% Similarity=0.312 Sum_probs=184.8
Q ss_pred EecccCcCcEEEEEEecC-CCeEEEEeCC-------CcEEEEEeecCCc------eEEEEEec-CCCCCeEEEEECcCCC
Q 009188 225 QILQGHTDEVWFLQFSHN-GKYLASSSND-------RSAIIWEVDLNGG------VTLKHKLS-GHQKPVSCVSWSSDDQ 289 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~-g~~l~tg~~d-------g~i~iwd~~~~~~------~~~~~~~~-~h~~~v~~l~~s~~~~ 289 (540)
..|..|.+.|+.++-+|. .+.|+|+-.+ ..+.||.+..... .+.+..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 567789999999999995 4566665432 2478999864322 12222222 4556899999999999
Q ss_pred eEEEeeCCCcEEEEECCCCeE-EEEee-----cCCCcEEEEEEec--CCCEEEEEeCCCcEEEEecCCc-eEEEeecccc
Q 009188 290 QLLTCGVEEAVRRWDVSSGNC-LHVYE-----KAGLGLVSCGWHP--DRKWIFSGANDKSICMWELGGK-ELECWKGQRT 360 (540)
Q Consensus 290 ~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 360 (540)
.+++-. |..|.+|++..+.. +..+. .+....++-+|+| +++.+++. .|+++..||+++. +...+...|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 998875 88899999988765 33332 2345678889999 77777765 5789999999874 4445666777
Q ss_pred ceEEEEEEccCCCE-EEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCC-CCEEEEEecCCeEEEEEecCC---
Q 009188 361 LKISDLEVTSDGKQ-IITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEGE--- 432 (540)
Q Consensus 361 ~~v~~i~~~~~~~~-l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~--- 432 (540)
..++++.|+|+..+ |++++.||.|++||.+... .....|...+.++.|+|. .+++++++.|..|.+|....-
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 88999999998765 6688899999999998765 566778999999999995 478889999999999975421
Q ss_pred -------------------------ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 433 -------------------------VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 433 -------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
...+.++..|...++.+.+. +.+.-++|+-+.||.+.|=.+.
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS--sadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS--SADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEEeec--cCCCeeEEEeccCceEEeecCC
Confidence 12234677788887775543 5566788999999999886654
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1.2e-16 Score=156.29 Aligned_cols=262 Identities=16% Similarity=0.209 Sum_probs=190.6
Q ss_pred CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC-CCeEEEeeCCCcEEEEECCCCeE--EE----EeecCCCcEEEEE
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVSSGNC--LH----VYEKAGLGLVSCG 325 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~ 325 (540)
+.+.+|++......+. .+ .-...|++++|+|. ..+++.|..+|.|.+||++.+.. .. ....|..+++.+.
T Consensus 222 ~~~~vW~~~~p~~Pe~--~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPEL--VL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCCCceE--EE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 4799999986533332 22 34678999999995 56777778999999999987654 22 2236788999999
Q ss_pred EecCCC--EEEEEeCCCcEEEEecCCceE------EEe------eccccceEEEEEEccC-CCEEEEEecCCeEEEEECC
Q 009188 326 WHPDRK--WIFSGANDKSICMWELGGKEL------ECW------KGQRTLKISDLEVTSD-GKQIITMCKESALLLLDRE 390 (540)
Q Consensus 326 ~~~~~~--~l~~~~~dg~i~iwd~~~~~~------~~~------~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~~d~~ 390 (540)
|..+.. -|++++.||.|..|+++.-.. ... .......+++++|.+. -..+++|+.+|.|..-+..
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 987544 499999999999999864221 001 1123346888999864 4678999999999885443
Q ss_pred Cce----------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcE
Q 009188 391 AKV----------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 391 ~~~----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 460 (540)
+.. .....|.++|+++.++|=+..++..+.|-+++||.......++..+..+....+.+.++. .....
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp--trpav 456 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP--TRPAV 456 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcC--cCceE
Confidence 322 245568899999999997765555555999999998744466666666665544444432 23367
Q ss_pred EEEeeCCCcEEEEECCC--CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 461 IASGSEDSQVYIWHRAS--CDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
++++..||.|.+||+.. ..++.+.+-+....+.+.|++.|. +|+.|...|++.+|++..
T Consensus 457 F~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 88899999999999864 445555555666778888999885 999999999999999964
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.1e-16 Score=151.73 Aligned_cols=200 Identities=20% Similarity=0.361 Sum_probs=160.0
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC---CeEEEeeCCCcEEEE
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD---QQLLTCGVEEAVRRW 303 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iw 303 (540)
+-|-...-....||+|+++++.... ..|.||...++ .+...+.+|..++..+.+.|.. .++++++.+|.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg---~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATG---ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchH---hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 4444444445678999998887765 58999999877 5666899999999999998854 467899999999999
Q ss_pred ECCCCeEEEEee--------------------------------------------------------------------
Q 009188 304 DVSSGNCLHVYE-------------------------------------------------------------------- 315 (540)
Q Consensus 304 d~~~~~~~~~~~-------------------------------------------------------------------- 315 (540)
|...+..++++.
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 988765544321
Q ss_pred -----------------------------------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC----ceEEEee
Q 009188 316 -----------------------------------KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG----KELECWK 356 (540)
Q Consensus 316 -----------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~ 356 (540)
.|...+++.+++|+++++++|..||.|.+|.--+ ..-....
T Consensus 168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l 247 (792)
T KOG1963|consen 168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL 247 (792)
T ss_pred EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE
Confidence 1334568899999999999999999999997532 1122334
Q ss_pred ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEE-eecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 357 GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY-IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
.-|...|.+++|+++|.++++|+..+.+.+|...++...+ ....++|..+.++||+.+.++...|+.|.+....
T Consensus 248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 4455689999999999999999999999999999987444 4568899999999999999999999999998764
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=9.6e-16 Score=146.89 Aligned_cols=265 Identities=9% Similarity=0.126 Sum_probs=173.5
Q ss_pred CCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEe-CCCcEEEEEeecCCceEEEEEecCCCCCe
Q 009188 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSS-NDRSAIIWEVDLNGGVTLKHKLSGHQKPV 279 (540)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 279 (540)
..++.+.+|+-... -....++.+. +.+....++++|++++|++++ .++.|.+|+++..+......... ..+..
T Consensus 9 ~~~~~I~~~~~~~~----g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 9 PESQQIHVWNLNHE----GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred CCCCCEEEEEECCC----CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 45667777764311 1123444454 345677899999999987764 57889999997433333333332 33456
Q ss_pred EEEEECcCCCeEEEeeC-CCcEEEEECCC-Ce---EEEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEEecCC-ceE
Q 009188 280 SCVSWSSDDQQLLTCGV-EEAVRRWDVSS-GN---CLHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMWELGG-KEL 352 (540)
Q Consensus 280 ~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~ 352 (540)
..++|+|+++++++++. ++.|.+|++.+ +. .+..+. +.....+++++|+++++++++ .++.|.+||+++ +.+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 78999999999988874 78899999964 32 233332 223467788999999886555 568999999965 322
Q ss_pred EE-----eeccccceEEEEEEccCCCEEEEEec-CCeEEEEECCC--ceE---EEe-e------cCCceeEEEEcCCCCE
Q 009188 353 EC-----WKGQRTLKISDLEVTSDGKQIITMCK-ESALLLLDREA--KVE---RYI-E------EDQTITSFSLSRDNKF 414 (540)
Q Consensus 353 ~~-----~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~~d~~~--~~~---~~~-~------~~~~i~~~~~s~~~~~ 414 (540)
.. ...........+.|+|+|+++++++. ++.|.+|++.. ... ... . .......+.++|++++
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 11 11112235678999999999988876 89999999873 221 111 1 1112335889999999
Q ss_pred EEEEec-CCeEEEEEecCCce---eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC-CCcEEEEECC
Q 009188 415 LLVNLL-NQEIHLWNIEGEVK---LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE-DSQVYIWHRA 476 (540)
Q Consensus 415 l~~~~~-dg~i~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~-dg~i~iwd~~ 476 (540)
++++.. ++.|.+|++..... .+........+ ....++++|++|++++. +++|.+|++.
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p----~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP----RGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC----CceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999864 78999999965422 22222211111 12233889999988775 8899999874
No 190
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.8e-17 Score=155.91 Aligned_cols=260 Identities=15% Similarity=0.245 Sum_probs=184.5
Q ss_pred EecCCCeEEE--EeCCCcEEEEEeecCCceEEEEEec--CCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCCC-----
Q 009188 239 FSHNGKYLAS--SSNDRSAIIWEVDLNGGVTLKHKLS--GHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSSG----- 308 (540)
Q Consensus 239 ~sp~g~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~----- 308 (540)
|+.+...+|. ++..|.|-||+++..+... -..+. .....|+.+.|.| |...|+.++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLP-Dgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLP-DGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCC-cccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 4445556654 4557899999997543221 11111 2345699999999 7789999999999999998764
Q ss_pred --eEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEE
Q 009188 309 --NCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALL 385 (540)
Q Consensus 309 --~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~ 385 (540)
.....+..|...|+++.|+| -.+.|++++.|-+|++||+.+.........|...|.+++|+|+|+.+++.+.||+++
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 34567889999999999999 566899999999999999999888888888999999999999999999999999999
Q ss_pred EEECCCceEEEeecCC----ceeEEEEcCCCCEEEEEecCC----eEEEEEecCCc-eeeeEeeCCcCCeeEEEeeeccC
Q 009188 386 LLDREAKVERYIEEDQ----TITSFSLSRDNKFLLVNLLNQ----EIHLWNIEGEV-KLVAKYKGHKRSRFVIRSCFGGL 456 (540)
Q Consensus 386 ~~d~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~ 456 (540)
+|+.+..........+ .-..+.|.-+|+++++.+.|. .|.+||..+-. .++.+..-...+...+ ..+...
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~Lv-P~YD~D 824 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLV-PHYDYD 824 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcccc-ccccCC
Confidence 9999887755544433 335688999999998877654 58888876532 2222222111111111 112123
Q ss_pred CCcEEEEeeCCCcEEEEECCCCcee-EeecCCCCCe--EEEEeCCCC
Q 009188 457 EQAFIASGSEDSQVYIWHRASCDLI-GALPGHSGAV--NCVSWNPAN 500 (540)
Q Consensus 457 ~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v--~~l~~~~~~ 500 (540)
.+.++++|-.|..|++|.+-...+. ..+..|..++ ..++|.+..
T Consensus 825 s~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred CceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeeccc
Confidence 3456788999999999997655443 3333333222 345555543
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.6e-16 Score=156.91 Aligned_cols=233 Identities=15% Similarity=0.128 Sum_probs=164.3
Q ss_pred CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEec
Q 009188 252 DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE---EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHP 328 (540)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 328 (540)
+..|.+||.+... ...+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++.... ..........+|+|
T Consensus 183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC
Confidence 4689999986432 23466788889999999999999988754 3699999988764322 22222344689999
Q ss_pred CCCEEEEEe-CCCcEE--EEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECC--CceEEEeecCCc
Q 009188 329 DRKWIFSGA-NDKSIC--MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDRE--AKVERYIEEDQT 402 (540)
Q Consensus 329 ~~~~l~~~~-~dg~i~--iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~--~~~~~~~~~~~~ 402 (540)
||+.|+.++ .+|.+. +||+.++....... +...+....|+|||+.++.++ .++...+|+.. +.......+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 999888764 677655 45666666655544 334678899999999877655 56777777654 33333333332
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC--CCCce
Q 009188 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR--ASCDL 480 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~ 480 (540)
....|+|+|++++..+.++ +.+||+.++.. ......... ....++|+|++|+.++.+|.+.+|++ .+|+.
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-~~lt~~~~~-----~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGST-EVLSSTFLD-----ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-EEecCCCCC-----CCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 4578999999998887755 56699877632 211111111 12334999999999999998888875 36888
Q ss_pred eEeecCCCCCeEEEEeCCC
Q 009188 481 IGALPGHSGAVNCVSWNPA 499 (540)
Q Consensus 481 ~~~~~~h~~~v~~l~~~~~ 499 (540)
...+.+|.+.+...+|+|-
T Consensus 408 ~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEccCCCCCCCCcccCCC
Confidence 8889889999999999985
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=1.2e-16 Score=136.88 Aligned_cols=240 Identities=19% Similarity=0.283 Sum_probs=176.2
Q ss_pred ccCcCcEEEEEEecCCC-----eEEEEeCCCcEEEEEeecCC-ceEEEEEe-----cCCCCCeEEEEECc-CCCeEEEee
Q 009188 228 QGHTDEVWFLQFSHNGK-----YLASSSNDRSAIIWEVDLNG-GVTLKHKL-----SGHQKPVSCVSWSS-DDQQLLTCG 295 (540)
Q Consensus 228 ~~h~~~V~~~~~sp~g~-----~l~tg~~dg~i~iwd~~~~~-~~~~~~~~-----~~h~~~v~~l~~s~-~~~~l~s~~ 295 (540)
..|.-+++.+.|.|+.. +|||++ ..+++|.+.... ...+...+ ..+..++++..|+. +.+++.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 35888999999999763 566655 369999987422 22222222 34567899999986 678999999
Q ss_pred CCCcEEEEECCCCe---EEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC
Q 009188 296 VEEAVRRWDVSSGN---CLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 296 ~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
-|-+..|||+++|. ....+-.|..+|..++|...+ +.|++.+.||.|++||++..+.....-...
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p----------- 239 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP----------- 239 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC-----------
Confidence 99999999999873 355677999999999999854 478899999999999998654322221111
Q ss_pred CCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCC-CCEEEEEec-CCeEEEEEecCCceeeeEeeCCcCCeeEE
Q 009188 372 GKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRD-NKFLLVNLL-NQEIHLWNIEGEVKLVAKYKGHKRSRFVI 449 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 449 (540)
....+...++|++. -+++++-.. ...|.+.|++....++..+.+|...+..+
T Consensus 240 --------------------------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgI 293 (364)
T KOG0290|consen 240 --------------------------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGI 293 (364)
T ss_pred --------------------------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccce
Confidence 00234555677764 466666444 45799999999889999999999998888
Q ss_pred EeeeccCCCcEEEEeeCCCcEEEEECCCCce------eEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 450 RSCFGGLEQAFIASGSEDSQVYIWHRASCDL------IGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
.+... ....|++++.|..+.+||+...-. +-.+. -.+.|+.+.|++..+..++.+..
T Consensus 294 aWaPh--S~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 294 AWAPH--SSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred EecCC--CCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 87653 457899999999999999875322 22223 46789999999877767766644
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2.7e-16 Score=136.95 Aligned_cols=282 Identities=18% Similarity=0.303 Sum_probs=195.4
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEEEEECCCCeEEEEe
Q 009188 236 FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVRRWDVSSGNCLHVY 314 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 314 (540)
-++|||+|+++|+++.- .+.|=|..+- +....+ .--+.|..+.|..|..+++++ ..++.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl---q~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL---QLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh---hHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 46899999999999875 5666665422 111111 123568889999988877765 56789999999999988889
Q ss_pred ecCCCcEEEEEEecCCCEEE-EEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC------------
Q 009188 315 EKAGLGLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE------------ 381 (540)
Q Consensus 315 ~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------------ 381 (540)
.....++.+++|+|||+.++ +...+-.|.+|.+.+.......-.. ..+..++|+|||++.+..++-
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK-~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK-TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc-cCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 88889999999999996555 5667889999999877665544333 356888999999887766531
Q ss_pred ------------------------CeEEEEECCCceE-EEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC----
Q 009188 382 ------------------------SALLLLDREAKVE-RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE---- 432 (540)
Q Consensus 382 ------------------------~~i~~~d~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---- 432 (540)
..+.+||.--... ....-.-.+..++|+|.++++++|+.|+.+++.+--+-
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence 3355565433222 22333467889999999999999999998887553210
Q ss_pred -------------------------------------------------------ceeeeEee---CCcCCeeEEEeeec
Q 009188 433 -------------------------------------------------------VKLVAKYK---GHKRSRFVIRSCFG 454 (540)
Q Consensus 433 -------------------------------------------------------~~~~~~~~---~~~~~~~~i~~~~~ 454 (540)
...+.+++ ...++...+....+
T Consensus 247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf 326 (447)
T KOG4497|consen 247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF 326 (447)
T ss_pred hhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee
Confidence 00000011 01112223334455
Q ss_pred cCCCcEEEEeeC--CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 455 GLEQAFIASGSE--DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 455 ~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
++|..|+++-.+ -+.+.+||++..+....+. ...+|....|+|..+++ +.+.....+++|......+..
T Consensus 327 s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL-~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 327 SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRL-VVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred cCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceE-EEEcCCceEEEEcCCCceEEe
Confidence 888888887654 3579999999887766655 56789999999998854 444444569999988755443
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=142.43 Aligned_cols=249 Identities=12% Similarity=0.171 Sum_probs=189.7
Q ss_pred EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC------CeEEEEeec-CCCcEEEEEEecCCCEEEEEeCCCc
Q 009188 269 KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS------GNCLHVYEK-AGLGLVSCGWHPDRKWIFSGANDKS 341 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 341 (540)
.+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++. .+++..... |.+.|.|++|...+..+++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345678999999999999999999999999999999853 455555543 4589999999999999999999999
Q ss_pred EEEEecCCceEEEeeccc--cceEEEEEEccCCCEEEEEecCCeEEEEECCCce-----EEEeecCCceeEEEEcCCC-C
Q 009188 342 ICMWELGGKELECWKGQR--TLKISDLEVTSDGKQIITMCKESALLLLDREAKV-----ERYIEEDQTITSFSLSRDN-K 413 (540)
Q Consensus 342 i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~i~~~~~s~~~-~ 413 (540)
|...|+.+.+......+. .+.|..+..+|..+.+++.+.++.|.+||.+... ...........++.|+|.. .
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 999999887766555433 3579999999999999999999999999998754 2222345567888999954 7
Q ss_pred EEEEEecCCeEEEEEecCCceeeeEeeCCcCC---eeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee-EeecCCC-
Q 009188 414 FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS---RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI-GALPGHS- 488 (540)
Q Consensus 414 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~- 488 (540)
+|++.+..+.+-+||.+....++..+.+..+- .+......|+++|+.+.+--....-..||+-+.++. ..+. |.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~ 287 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNP 287 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCC
Confidence 88889999999999998765555444333221 111122334888988887777667778888775543 3333 32
Q ss_pred ------CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 489 ------GAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 489 ------~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
..+.+++|..+. -++||+++-.|++|.+..
T Consensus 288 ~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred Ccceeeeeeeeeeeecce--eeeccCcccceEEEecCC
Confidence 257788887654 699999999999999853
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=1.9e-16 Score=155.03 Aligned_cols=245 Identities=12% Similarity=0.171 Sum_probs=179.8
Q ss_pred CcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCc--e-EEEEEecCCCCCeEEEEECcCCCe--EEEeeCCCcEEEE
Q 009188 230 HTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGG--V-TLKHKLSGHQKPVSCVSWSSDDQQ--LLTCGVEEAVRRW 303 (540)
Q Consensus 230 h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~l~~s~~~~~--l~s~~~dg~i~iw 303 (540)
-...|.|++|+| +..++|.|..+|.|.+||+..+.. . ........|..+|+.+.|..+..- +++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467999999999 566788889999999999986543 1 112233468999999999875444 9999999999999
Q ss_pred ECCCCeE------EEEee------cCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCce--------EEEeeccccce
Q 009188 304 DVSSGNC------LHVYE------KAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKE--------LECWKGQRTLK 362 (540)
Q Consensus 304 d~~~~~~------~~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~ 362 (540)
+++.-.. ..... .....+++++|.+ +...|++|+.+|.|.--+-.+.. .......|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764322 11111 2234788999998 56789999999988774443211 12234456679
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCC-ceeee
Q 009188 363 ISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGE-VKLVA 437 (540)
Q Consensus 363 v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~ 437 (540)
|.++.++|-+..++..+.|-++++|...... ..+..+...+++++|||.. ..++++..+|.+.+||+... ..++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999999877777779999999977322 3444456669999999966 67777888999999999643 23444
Q ss_pred EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 438 KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 438 ~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
+.... ...+...++++.|++|++|...|++.+|++..
T Consensus 481 s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 43333 23455667789999999999999999999853
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.1e-17 Score=147.82 Aligned_cols=193 Identities=19% Similarity=0.229 Sum_probs=150.7
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 009188 235 WFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY 314 (540)
Q Consensus 235 ~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 314 (540)
.+++|+++|..+++|+.||++|||++... ........|.+.|.++.|+|||+.|++.+.| ..+||++.+|.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999997643 3445567899999999999999999999999 8999999999777665
Q ss_pred ec--CCCcEEEEEEecCC---CE--EEEEeCCCcEEEEecCCceE----EEe-eccccceEEEEEEccCCCEEEEEecCC
Q 009188 315 EK--AGLGLVSCGWHPDR---KW--IFSGANDKSICMWELGGKEL----ECW-KGQRTLKISDLEVTSDGKQIITMCKES 382 (540)
Q Consensus 315 ~~--~~~~v~~~~~~~~~---~~--l~~~~~dg~i~iwd~~~~~~----~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~ 382 (540)
.. .+.....+.|+.|+ .+ ++.....+.|+.|++....- ... .......|++++++++|++++.|+.+|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 42 23456677888776 32 23334445677777632111 111 111223799999999999999999999
Q ss_pred eEEEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 383 ALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 383 ~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
.|.+++...-+ .....|...|+.+.|+|+.++++..+.+....+..+..
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999988866 23345788999999999999999999898888887754
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=9.4e-17 Score=148.42 Aligned_cols=261 Identities=15% Similarity=0.181 Sum_probs=183.6
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeE-EEEEC-------cCCCeEEEeeCCCcE
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS-CVSWS-------SDDQQLLTCGVEEAV 300 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s-------~~~~~l~s~~~dg~i 300 (540)
.|...|.|+.|+.+...+.+++.+..+.-|++... ..+..... ...|. .+-.- .....++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCC---cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 36677789999988776666655444444444322 21111111 11111 11111 123578888999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
.+.+ ..++..+....|.+.+.+-.|+|||.-|++++.||.|++|.- ++.+.........+|.|++|.|+.+.++.+.
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~- 164 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ- 164 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-
Confidence 9988 578888888999999999999999999999999999999985 4445455555556899999999987766543
Q ss_pred CCeEEE--EECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCC
Q 009188 381 ESALLL--LDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 381 d~~i~~--~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
.+.+.+ .....+..+...|++-|.++.|++..+.+++|+.|-..++||-.+. .+..-..|..+ +....|.|+
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--~Lf~S~~~ey~---ITSva~npd- 238 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--NLFTSAAEEYA---ITSVAFNPE- 238 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--ccccCChhccc---eeeeeeccc-
Confidence 334444 4444556888899999999999999999999999999999998763 34444445544 455555888
Q ss_pred cEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEE
Q 009188 459 AFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRI 515 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~i 515 (540)
..++.+|.+ +++ --+...+.|..++|++||. .++.|...|.+.+
T Consensus 239 ~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGT-Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGT-QATCGTSTGQLIV 282 (737)
T ss_pred cceeeeeee-eee-----------ecCCCccceEEEEEcCCCc-eeeccccCceEEE
Confidence 555555542 222 1122468899999999997 7888888888765
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=5.9e-15 Score=140.83 Aligned_cols=299 Identities=12% Similarity=0.135 Sum_probs=189.2
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CCC
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VEE 298 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg 298 (540)
..+.+..+....+.-..+.|+|||+++++++.||.|.++|+.+.. ...++.. .....++++++||++++++. ..+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~---~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK---VVATIKV-GGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS---EEEEEE--SSEEEEEEE--TTTEEEEEEEETT
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc---EEEEEec-CCCcceEEEcCCCCEEEEEecCCC
Confidence 356677777655444567899999999999999999999998763 4445543 33468899999999999876 588
Q ss_pred cEEEEECCCCeEEEEeecC-------CCcEEEEEEecCCCEEEEEeCC-CcEEEEecCCce-EEEeeccccceEEEEEEc
Q 009188 299 AVRRWDVSSGNCLHVYEKA-------GLGLVSCGWHPDRKWIFSGAND-KSICMWELGGKE-LECWKGQRTLKISDLEVT 369 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~ 369 (540)
.+.++|.++.+.++.+... ...+..+..+|....++..-.| +.|.+.|..... +............+..|+
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d 180 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD 180 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC
Confidence 9999999999999887643 3467788888888866666554 788888875432 222222223367789999
Q ss_pred cCCCEEEEE-ecCCeEEEEECCCceEEEe-e-----cCCceeEE-------EE--cCCCCEEEEEecCCeEEEEEecCCc
Q 009188 370 SDGKQIITM-CKESALLLLDREAKVERYI-E-----EDQTITSF-------SL--SRDNKFLLVNLLNQEIHLWNIEGEV 433 (540)
Q Consensus 370 ~~~~~l~~~-~~d~~i~~~d~~~~~~~~~-~-----~~~~i~~~-------~~--s~~~~~l~~~~~dg~i~i~d~~~~~ 433 (540)
|++++++++ .....+.++|..+...... . +..+...+ .| ...+...++.-..+.+.+||....
T Consensus 181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w- 259 (369)
T PF02239_consen 181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW- 259 (369)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT-
T ss_pred cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC-
Confidence 999987765 5677899999988763322 1 22222222 12 112233323333344556676665
Q ss_pred eeeeEeeCCcCCeeEEEeeeccCCCcEEEEe----eCCCcEEEEECCCCceeEeecCCC-CCeEEEEeCCCCCCEEEEEe
Q 009188 434 KLVAKYKGHKRSRFVIRSCFGGLEQAFIASG----SEDSQVYIWHRASCDLIGALPGHS-GAVNCVSWNPANPHMLASAS 508 (540)
Q Consensus 434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~ 508 (540)
+.++.+...... ..+.. +|+++++++. ...+.|.++|..+.+.+.++.... ..+..+.|+++|..+.+|.-
T Consensus 260 kvv~~I~~~G~g-lFi~t---hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKT---HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp SEEEEEE-SSSS---EE-----TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred eEEEEEECCCCc-ceeec---CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe
Confidence 677777776555 33333 8999999888 455899999999998888776322 35899999999987777776
Q ss_pred CCC-cEEEecCCCCCccccc
Q 009188 509 DDR-TIRIWGLKDLNVKRKD 527 (540)
Q Consensus 509 ~Dg-~i~iw~~~~~~~~~~~ 527 (540)
.++ .|.+||.++.+...+.
T Consensus 336 ~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 336 DGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp --TTEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCcEEEEEE
Confidence 655 8999999999988763
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.5e-15 Score=131.77 Aligned_cols=273 Identities=16% Similarity=0.212 Sum_probs=180.7
Q ss_pred HHhhcccccCCCCCCccccCCCcCcCCCCcceEEecc-cCcCcEEEEEEecC-CCeEEEEeCCCcEEEEEeecCCceEE-
Q 009188 192 QREACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQ-GHTDEVWFLQFSHN-GKYLASSSNDRSAIIWEVDLNGGVTL- 268 (540)
Q Consensus 192 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~sp~-g~~l~tg~~dg~i~iwd~~~~~~~~~- 268 (540)
|+..|+.....|..+.+|++.. .+...++ .-...|+|++|-|. ++-|+.|+..| |.||..+.......
T Consensus 108 qH~~~fava~nddvVriy~kss--------t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 108 QHIIAFAVATNDDVVRIYDKSS--------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN 178 (445)
T ss_pred hhhhhhhhhccCcEEEEeccCC--------CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence 4556777778888888887653 1112222 23468999999995 45788888754 99998764322111
Q ss_pred ----------EEEecCCCCCeEEEEECcCCCeEEEeeC-CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEe
Q 009188 269 ----------KHKLSGHQKPVSCVSWSSDDQQLLTCGV-EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA 337 (540)
Q Consensus 269 ----------~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 337 (540)
+....+| .+|+++.|.+||..+++++. |..|.|||..++.++.......+.++-+.|+||+.+|+++.
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 1122344 68999999999999999985 56799999999988776656667888999999999999999
Q ss_pred CCCcEEEEec-CCceEEEeeccccceEEEEEEccCCCEEEEEec-CCeEEEEECCCce-----------EEEe-------
Q 009188 338 NDKSICMWEL-GGKELECWKGQRTLKISDLEVTSDGKQIITMCK-ESALLLLDREAKV-----------ERYI------- 397 (540)
Q Consensus 338 ~dg~i~iwd~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~~d~~~~~-----------~~~~------- 397 (540)
-|+..++|+. ++.....+..... .|...+|+|+|++++.++. ...++-.....+. ....
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred ccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 9999999965 4455555554444 8999999999998876553 3333322222111 0000
Q ss_pred ------ecCCceeEEEEcCCCCEEEEEecCCe--------EEEEEecCCceeeeEeeCCcCC--eeEEEeeeccCCCcEE
Q 009188 398 ------EEDQTITSFSLSRDNKFLLVNLLNQE--------IHLWNIEGEVKLVAKYKGHKRS--RFVIRSCFGGLEQAFI 461 (540)
Q Consensus 398 ------~~~~~i~~~~~s~~~~~l~~~~~dg~--------i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l 461 (540)
...+++.+++|+|.|.++++....+. |.+||.+........+-+.... ...+.+.+...++.+|
T Consensus 337 i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lL 416 (445)
T KOG2139|consen 337 ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLL 416 (445)
T ss_pred hhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEE
Confidence 12467889999999999999876543 6677776542222222121111 1223333333456666
Q ss_pred EEeeCCCcEEEEEC
Q 009188 462 ASGSEDSQVYIWHR 475 (540)
Q Consensus 462 ~s~s~dg~i~iwd~ 475 (540)
..+=..|.+.-|++
T Consensus 417 siaWsTGriq~ypl 430 (445)
T KOG2139|consen 417 SIAWSTGRIQRYPL 430 (445)
T ss_pred EEEeccCceEeeee
Confidence 66666666665553
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=139.75 Aligned_cols=266 Identities=16% Similarity=0.243 Sum_probs=180.7
Q ss_pred cCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEec--CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC-
Q 009188 200 NSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSH--NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ- 276 (540)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~- 276 (540)
.-..+.+++|+.. ....+..+++|.+.++.+.|.. ....+.+|+.||+|++||+....... ...+..+.
T Consensus 46 ~lSngsv~lyd~~-------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-~~~~~~~~~ 117 (376)
T KOG1188|consen 46 SLSNGSVRLYDKG-------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-RISWTQQSG 117 (376)
T ss_pred EecCCeEEEEecc-------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-heeccCCCC
Confidence 3344567777543 2567889999999999999987 46689999999999999998765433 33445555
Q ss_pred CCeEEEEECcCCCeEEEee----CCCcEEEEECCCCeE-EEE-eecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCC
Q 009188 277 KPVSCVSWSSDDQQLLTCG----VEEAVRRWDVSSGNC-LHV-YEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~----~dg~i~iwd~~~~~~-~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 349 (540)
.+..|++...+++.+++|+ .+-.|.+||++..+. +.. ...|...|+++.|+| +.+.|++|+.||.|.+||++.
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 5677777776788888875 356799999998765 443 457889999999999 667999999999999999964
Q ss_pred ceEE---EeeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCCceEEEeecCCce------------eEE-EEcC-C
Q 009188 350 KELE---CWKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREAKVERYIEEDQTI------------TSF-SLSR-D 411 (540)
Q Consensus 350 ~~~~---~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i------------~~~-~~s~-~ 411 (540)
..-. .....+...|..+.|..++ +.+.+.+...+..+|+++.+..........+ .-+ +.+| +
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 3211 1112334479999998877 5688899999999999887551111110000 011 1223 3
Q ss_pred CCEEEEEec-CCeEEEEEecC---C--ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC
Q 009188 412 NKFLLVNLL-NQEIHLWNIEG---E--VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 412 ~~~l~~~~~-dg~i~i~d~~~---~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
...+++++. .+...++-+.. . ......+.++. ...++..++...+.++++|++||.+.+|..
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~--~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH--EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCc--HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 344444444 55555554431 1 12233344422 224555566778899999999999999985
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6e-15 Score=123.33 Aligned_cols=229 Identities=14% Similarity=0.177 Sum_probs=165.7
Q ss_pred cccccCCCCCCccccCCCcCc---CCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCce---EEE
Q 009188 196 CMFHNSSDRDMSLYTDHQCGR---DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGV---TLK 269 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~---~~~ 269 (540)
.++..+..+.+.++.-.+... .......+...++|.++|+.++|. ..+|++|+ ||.|+=|......+. +..
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhh
Confidence 466777777877765443321 222233455669999999999998 44677776 599999987633210 000
Q ss_pred --EEecCCC-----CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcE
Q 009188 270 --HKLSGHQ-----KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSI 342 (540)
Q Consensus 270 --~~~~~h~-----~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 342 (540)
.....|. -.|+++...|..+.+++++.|+.++-||+++|+..+.+++|++.+.++.--.....+++|+.||++
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccE
Confidence 0111222 358899999988888888899999999999999999999999999999886666689999999999
Q ss_pred EEEecCCceEEEeeccc----------cceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCC
Q 009188 343 CMWELGGKELECWKGQR----------TLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRD 411 (540)
Q Consensus 343 ~iwd~~~~~~~~~~~~~----------~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~ 411 (540)
++||.++.+........ ...|.+++. +..++++| ....+.+|.++... ...+....++..+.|.
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~-- 255 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFV-- 255 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec-CCCceeEEeccCCCceEEEecccceeEeeee--
Confidence 99999987766544321 123444444 45566654 45678999998876 5666777888888885
Q ss_pred CCEEEEEecCCeEEEEEecCC
Q 009188 412 NKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 412 ~~~l~~~~~dg~i~i~d~~~~ 432 (540)
...+++++..+.+.-|.+.+.
T Consensus 256 ~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 256 DDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred cceEEEeccccceeeeeeccE
Confidence 456888888888999988753
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=5.4e-17 Score=151.17 Aligned_cols=239 Identities=15% Similarity=0.247 Sum_probs=171.5
Q ss_pred HhhcccccCCCCCCccccCCCc-CcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecC-------C
Q 009188 193 REACMFHNSSDRDMSLYTDHQC-GRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN-------G 264 (540)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~-------~ 264 (540)
....+++++.++.+.+|.-... .......+++.+|.+|.++|.|+++++++..+++|+.||+|+.|++..+ .
T Consensus 305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 3345567777788888865221 1223345678899999999999999999999999999999999966522 1
Q ss_pred ceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCC--CcEEEEEEecCC-CEEEEEeCCCc
Q 009188 265 GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAG--LGLVSCGWHPDR-KWIFSGANDKS 341 (540)
Q Consensus 265 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~dg~ 341 (540)
.......+.||.+.|+.+++|+....|++++.||+++.|+...... .++.... ....++.+-... .+.++...-+.
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~ 463 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY 463 (577)
T ss_pred cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccccc
Confidence 1244567889999999999999999999999999999999866555 3333221 223344443322 12222222222
Q ss_pred EEEEecCCceEEEeec-------cccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCC
Q 009188 342 ICMWELGGKELECWKG-------QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDN 412 (540)
Q Consensus 342 i~iwd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~ 412 (540)
-.++++....-..+.. .....+.-+.+.|.+...+++..|+.|+++|..+.. .....|...++++++.|+|
T Consensus 464 ~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng 543 (577)
T KOG0642|consen 464 TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG 543 (577)
T ss_pred ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCC
Confidence 2233332222111111 111356778889999999999999999999998876 5667789999999999999
Q ss_pred CEEEEEecCCeEEEEEecCC
Q 009188 413 KFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 413 ~~l~~~~~dg~i~i~d~~~~ 432 (540)
-+|++++.|+.+++|.+...
T Consensus 544 ~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ceEEeecCCceeehhhccch
Confidence 99999999999999998655
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.7e-15 Score=136.66 Aligned_cols=194 Identities=20% Similarity=0.227 Sum_probs=147.2
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce----EEEe
Q 009188 322 VSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV----ERYI 397 (540)
Q Consensus 322 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~ 397 (540)
.+++|+.+|..+++|+.||++++|+............+...|.++.|+|||+.+++.+.| ..++|+..+.. ....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999976665555566666799999999999999999999 99999998874 1113
Q ss_pred ecCCceeEEEEcCCC---CEEE--EEecCCeEEEEEecCCce----eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC
Q 009188 398 EEDQTITSFSLSRDN---KFLL--VNLLNQEIHLWNIEGEVK----LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS 468 (540)
Q Consensus 398 ~~~~~i~~~~~s~~~---~~l~--~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg 468 (540)
..+.....+.|+.++ .+.+ .....+.|..||+..... ..++..... ..+.+...+++|++++.|+.||
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~---~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF---KSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc---CcceeEEEcCCCcEEEEeccCC
Confidence 344556777888776 3333 333355677777643211 111111111 1355556699999999999999
Q ss_pred cEEEEECCCCceeEee-cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 469 QVYIWHRASCDLIGAL-PGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 469 ~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
.|-|++..+.+.++.. +.|...|+.+.|+|+.. .+++.+.|....+..+.-
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEee
Confidence 9999999998887655 46999999999999885 899999999998887764
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=3.5e-15 Score=151.02 Aligned_cols=256 Identities=13% Similarity=0.147 Sum_probs=182.5
Q ss_pred EEEEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCC-------CeEEEEeecCCCcEEEEEEecCCCEEEEEeC
Q 009188 267 TLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSS-------GNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 338 (540)
..+..+..|...|..++.++.. .++++||.||+|++|+... .+...++...+..+.++...+.++.+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4556677889999999988765 9999999999999999864 1334455556778999999999999999999
Q ss_pred CCcEEEEecCCceE-------EEeec-cccceEEE-EEEcc-CCC-EEEEEecCCeEEEEECCCce----EEEeecCCce
Q 009188 339 DKSICMWELGGKEL-------ECWKG-QRTLKISD-LEVTS-DGK-QIITMCKESALLLLDREAKV----ERYIEEDQTI 403 (540)
Q Consensus 339 dg~i~iwd~~~~~~-------~~~~~-~~~~~v~~-i~~~~-~~~-~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i 403 (540)
||.|.+.+++.... ..... ...+.+.+ -++.. .+. .++.+...+.+..||.+... .......+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999864111 11111 11222333 33332 233 68888899999999998865 3444567889
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe-eCCcCCeeEEEeeeccCCCcEEEEee--CCCcEEEEECCCCce
Q 009188 404 TSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY-KGHKRSRFVIRSCFGGLEQAFIASGS--EDSQVYIWHRASCDL 480 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~ 480 (540)
++++.+|.++++++|+..|.+.+||++=+ .++..+ .++...+..+..++..+.....++++ ..+.|.+|++.+|..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999999999999999999876 334333 34445555666676666556655554 477899999999876
Q ss_pred eEeecCC-------------------CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 481 IGALPGH-------------------SGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 481 ~~~~~~h-------------------~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
...+... .-......+...+ .++.+||.|..|+.||....+.-
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcccc
Confidence 6555422 0011122233233 38999999999999999876654
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1e-16 Score=148.66 Aligned_cols=239 Identities=16% Similarity=0.295 Sum_probs=166.0
Q ss_pred EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEec--CCCEEEEEeCCCcEEEE
Q 009188 269 KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGLVSCGWHP--DRKWIFSGANDKSICMW 345 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw 345 (540)
...+.||.+.|+|+.|+.+|.+|++|+.|-.+.|||....+.+..+. +|...|.++.|-| +++.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34578999999999999999999999999999999998888777664 7899999999999 56688999999999999
Q ss_pred ecCC----------ceEEEeeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCCceEE------------EeecCCc
Q 009188 346 ELGG----------KELECWKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREAKVER------------YIEEDQT 402 (540)
Q Consensus 346 d~~~----------~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~------------~~~~~~~ 402 (540)
|+.. .+.......|...|..++..|++ ..+.+++.||+++-+|++....- ....--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9963 11222334566688889999998 78899999999999999874311 1112234
Q ss_pred eeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce-
Q 009188 403 ITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL- 480 (540)
Q Consensus 403 i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 480 (540)
..++.++|.. .+|++|+.+-..++||.+.. ...+..... ...+ .|. .++.|+-|-...-+.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~---lks~~s~~~----~~~~--pp~--------~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRV---LKSFRSDGT----MNTC--PPK--------DCRCVRYFSPGHLKNS 265 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhh---ccCCCCCcc----ccCC--CCc--------ccchhheecCccccCc
Confidence 5788999954 78999999999999997532 111211110 0000 010 011111111000000
Q ss_pred eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 481 IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 481 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
...+..--..++-+.|+|+|..+|++-+.+ .|+++|+..++...
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKSPT 309 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCCce
Confidence 000010112367789999998788888776 79999998876543
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.6e-14 Score=142.42 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=161.2
Q ss_pred cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC---CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCC
Q 009188 254 SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV---EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR 330 (540)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (540)
.|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..+.+|++.+|+..... .....+....|+|||
T Consensus 180 ~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG 254 (429)
T PRK03629 180 ELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDG 254 (429)
T ss_pred eEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCC
Confidence 678887764321 223456778999999999999987653 346999999888644332 233344568999999
Q ss_pred CEEEEE-eCCC--cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC-C--eEEEEECCCce-EEEeecCCce
Q 009188 331 KWIFSG-ANDK--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE-S--ALLLLDREAKV-ERYIEEDQTI 403 (540)
Q Consensus 331 ~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~--~i~~~d~~~~~-~~~~~~~~~i 403 (540)
+.|+.. +.+| .|++||+.++......... ..+....|+|||+.++..+.. + .|+.+|..+.. ..........
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~ 333 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN 333 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc
Confidence 988865 4455 5999999887776655443 367789999999998877754 3 45566776654 3333344456
Q ss_pred eEEEEcCCCCEEEEEecC---CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc---EEEEECCC
Q 009188 404 TSFSLSRDNKFLLVNLLN---QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ---VYIWHRAS 477 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~---i~iwd~~~ 477 (540)
....|+|+|++++..+.+ ..|.+||+.++. ...+..... .....++|||++|+.++.++. ++++++ +
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~~~----~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~ 406 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDTFL----DETPSIAPNGTMVIYSSSQGMGSVLNLVST-D 406 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCCCCC----CCCceECCCCCEEEEEEcCCCceEEEEEEC-C
Confidence 678999999998876643 358888987662 222222111 112234899999999988774 677777 5
Q ss_pred CceeEeecCCCCCeEEEEeCC
Q 009188 478 CDLIGALPGHSGAVNCVSWNP 498 (540)
Q Consensus 478 ~~~~~~~~~h~~~v~~l~~~~ 498 (540)
|.....+.+|.+.+...+|+|
T Consensus 407 G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 407 GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCeEECccCCCCcCCcccCC
Confidence 666677888889999999998
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.1e-15 Score=148.21 Aligned_cols=247 Identities=15% Similarity=0.260 Sum_probs=178.3
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecC---CCcEEEEEEec--CCCEEEEEeCCCcEEEEecC-
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA---GLGLVSCGWHP--DRKWIFSGANDKSICMWELG- 348 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~- 348 (540)
...+...+.|+|-...++++.....|+|||.+.++.+..|..+ ...|+.+.+.. |...+++|+.||.|+||+--
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3345677889998899999987888999999999998888755 45788888876 55689999999999999752
Q ss_pred C----ceEEE-eec------cccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEE---EeecCCceeEEEEcC-CCC
Q 009188 349 G----KELEC-WKG------QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVER---YIEEDQTITSFSLSR-DNK 413 (540)
Q Consensus 349 ~----~~~~~-~~~------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~i~~~~~s~-~~~ 413 (540)
. .++.. +.. ...+.-.-+.|.....+|++++.-..|++||....... ..+....++++.-+. .|+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 12221 111 11111134567777777888888899999999886622 233456677776554 469
Q ss_pred EEEEEecCCeEEEEEecCCce--eeeEeeCCcCCeeEEEeeeccCCC-cEEEEeeCCCcEEEEECCCCcee--EeecCCC
Q 009188 414 FLLVNLLNQEIHLWNIEGEVK--LVAKYKGHKRSRFVIRSCFGGLEQ-AFIASGSEDSQVYIWHRASCDLI--GALPGHS 488 (540)
Q Consensus 414 ~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~--~~~~~h~ 488 (540)
.+++|..||.|++||.+.... .+..++.|......+.... .+.| .-|++|+.||.|++||++..... -++..|.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl-q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL-QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe-ecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 999999999999999986533 6777777877633343333 3333 25999999999999999874322 2223333
Q ss_pred --C-CeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 489 --G-AVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 489 --~-~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
+ ..+++..+++.+ ++|+|+. +.|+||++...++.
T Consensus 1302 ~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred ccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhc
Confidence 3 599999999887 9999988 99999999865544
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=2.4e-16 Score=143.35 Aligned_cols=270 Identities=13% Similarity=0.180 Sum_probs=205.8
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
-+-+.+.++.+|++++.|+..|.+..+|+.+. .+...+. -...|.++.|..+.+++|++ ...-+.||| ..|..+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtEl 203 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTEL 203 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEE
Confidence 35568899999999999999999999999765 3443332 34668999999888888876 566799999 578888
Q ss_pred EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 312 HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 312 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
+.++.+. .|..+.|.|..-+|++++..|.++.-|+.++++........+.+..++-+|-+..+-+|..+|+|.+|....
T Consensus 204 HClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 204 HCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred eehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 8887665 788999999998999999999999999999988877777777899999999999999999999999999988
Q ss_pred ce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc
Q 009188 392 KV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ 469 (540)
Q Consensus 392 ~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~ 469 (540)
+. .....|.++|.++++.++|+|+++.+.|..++|||++...++......+... .+ .+|..| +++.+....
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~--~l---s~Sqkg--lLA~~~G~~ 355 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPAS--NL---SLSQKG--LLALSYGDH 355 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcc--cc---cccccc--ceeeecCCe
Confidence 76 7778899999999999999999999999999999999874433333323222 11 113333 445556668
Q ss_pred EEEEE-CCCCc--eeEeecCC--CCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 470 VYIWH-RASCD--LIGALPGH--SGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 470 i~iwd-~~~~~--~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
|.||. .-.+. .-..+-.| .++|.++.|+|-.. +|-.|-..|.-.+-
T Consensus 356 v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED-vLGIGH~~G~tsil 406 (545)
T KOG1272|consen 356 VQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED-VLGIGHAGGITSIL 406 (545)
T ss_pred eeeehhhhcCCCCCCcchhhhccCcccccceeccHHH-eeeccccCCceeEe
Confidence 99994 22211 11111122 45899999999764 66555555443333
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=7.2e-15 Score=131.23 Aligned_cols=253 Identities=15% Similarity=0.165 Sum_probs=188.6
Q ss_pred CCCCeEEEEECcCC--CeEEEeeCCCcEEEEECCCCeEEEEe------ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 009188 275 HQKPVSCVSWSSDD--QQLLTCGVEEAVRRWDVSSGNCLHVY------EKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346 (540)
Q Consensus 275 h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 346 (540)
-...|..++|..++ ..++..+.+..+....+..+.+.... .....+|..++.. +..|++|..+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 34557777887554 35555556777777777665554433 2334566665543 34788889999999999
Q ss_pred cCC-----ceEEEeeccccceEEEEEEccCCCEEE-EEecC--CeEEEEECCCceEEEee-----------cCCceeEEE
Q 009188 347 LGG-----KELECWKGQRTLKISDLEVTSDGKQII-TMCKE--SALLLLDREAKVERYIE-----------EDQTITSFS 407 (540)
Q Consensus 347 ~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d--~~i~~~d~~~~~~~~~~-----------~~~~i~~~~ 407 (540)
... ..+..+..+ ..+..+.-++....++ +|+.. ..+.+||+.+....+.. ..-.++++.
T Consensus 132 ~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 973 333333333 2566666666555554 58888 78999999887543332 233568889
Q ss_pred EcCC--CCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEe-e
Q 009188 408 LSRD--NKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGA-L 484 (540)
Q Consensus 408 ~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~ 484 (540)
|-+. ...|++++.-+.+++||.+.+.+++..+.....+...+ ...|.++++++|..-|.+..||+++++.... +
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~---~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST---GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee---eecCCCcEEEEecccchhheecccCceeecccc
Confidence 9887 89999999999999999998888999888777764444 4478999999999999999999999998876 8
Q ss_pred cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc---ccCCCceEe
Q 009188 485 PGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK---DCHSNGVHY 535 (540)
Q Consensus 485 ~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~---~~~~~~v~~ 535 (540)
.+..+.|+++..+|.++ +++++|-|..|||+|+++.+++.. ..+.+++.+
T Consensus 287 kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~ 339 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILL 339 (412)
T ss_pred CCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhhhhhhccccEEEe
Confidence 89999999999999886 999999999999999999777654 444555544
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=4.1e-13 Score=119.38 Aligned_cols=235 Identities=10% Similarity=0.120 Sum_probs=169.0
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC--cEEEEECCC
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE--AVRRWDVSS 307 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~ 307 (540)
....+..+.|+.+...|..|+.|| -++|+.+.... ..........|.-+-|+ ..++|..+.+. .+++.++..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHH---hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc
Confidence 345677888999999999999998 67887764322 11111122335555565 44666666543 499999988
Q ss_pred CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc---ccceEEEEEEccCCCEEEEEe--cCC
Q 009188 308 GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ---RTLKISDLEVTSDGKQIITMC--KES 382 (540)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~--~d~ 382 (540)
+..+..+ ....+|.++.++. +.|+++-.+. |+|||++..++...... +...+.++++++.+.+++.-+ ..|
T Consensus 78 ~~~ICe~-~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 78 KTTICEI-FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred CceEEEE-ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 8777776 3455888998874 4677776654 99999988776554332 233466666666667877543 578
Q ss_pred eEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCe-EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc
Q 009188 383 ALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQE-IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 383 ~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 459 (540)
.|.+||..+-. .....|.+++.+++|+++|.+|++++..|+ |+++.+.++ ..+..|.......... ...+++++.
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~Iy-SL~Fs~ds~ 231 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVSIY-SLSFSPDSQ 231 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeEEE-EEEECCCCC
Confidence 99999998855 556689999999999999999999999997 689999888 5555555444444333 444499999
Q ss_pred EEEEeeCCCcEEEEECC
Q 009188 460 FIASGSEDSQVYIWHRA 476 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~ 476 (540)
+|++.|..++|.+|.+.
T Consensus 232 ~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLE 248 (391)
T ss_pred eEEEecCCCeEEEEEec
Confidence 99999999999999865
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=140.52 Aligned_cols=249 Identities=16% Similarity=0.215 Sum_probs=175.6
Q ss_pred CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE-EEEEEec-------CCCEEEEEeCCCcEEEE
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL-VSCGWHP-------DRKWIFSGANDKSICMW 345 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~-------~~~~l~~~~~dg~i~iw 345 (540)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.. .........-+ +.+..-+ ....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 566777899999887777766655555555554332 22222111111 1111111 23578899999999888
Q ss_pred ecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeE
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEI 424 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 424 (540)
+- .+.+......|...+.+-.|+|||.-+++++.||.|++|...+.. ........+|.|++|.|+.+.++.+. .+.+
T Consensus 91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~ 168 (737)
T KOG1524|consen 91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHI 168 (737)
T ss_pred cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeE
Confidence 74 344555566677789999999999999999999999999987765 33445677899999999987766654 4566
Q ss_pred EEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEE
Q 009188 425 HLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHML 504 (540)
Q Consensus 425 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 504 (540)
.|=.+..+ ..+-.++.|.+- +-++.|++..+++++|++|-..+|||. .|..+..-..|..+|++++|+|+ . .+
T Consensus 169 ~IKpL~~n-~k~i~WkAHDGi---iL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~-~~ 241 (737)
T KOG1524|consen 169 SIKPLAAN-SKIIRWRAHDGL---VLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-K-DY 241 (737)
T ss_pred EEeecccc-cceeEEeccCcE---EEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-c-ce
Confidence 67666655 344566778775 445566899999999999999999995 47777777789999999999998 3 56
Q ss_pred EEEeCCCcEEEecCCCCCccccccCCCce
Q 009188 505 ASASDDRTIRIWGLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 505 ~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v 533 (540)
+.+|.. +.|+=.++.|.+....-.+.|-
T Consensus 242 ~v~S~n-t~R~~~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 242 LLWSYN-TARFSSPRVGSIFNLSWSADGT 269 (737)
T ss_pred eeeeee-eeeecCCCccceEEEEEcCCCc
Confidence 666554 6776666666665544444443
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.8e-14 Score=134.74 Aligned_cols=284 Identities=11% Similarity=0.130 Sum_probs=198.4
Q ss_pred CcCcEEEEEEecCCCeE-EEEeCCCcEEEEEeecCCceEEEEEecCCC--CCeEEEEECcCCCeEEEeeCCCcEEEEECC
Q 009188 230 HTDEVWFLQFSHNGKYL-ASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ--KPVSCVSWSSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
|...-+.|..+|||+|+ |||..--.|++||+.. +...+..|. ..|.-.-.+.|-..++.--.|.+|-+..-
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-----LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-----LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccc-----ceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-
Confidence 67778899999999976 5677778999999862 233444554 34555555656556666667777766542
Q ss_pred CCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEE
Q 009188 307 SGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLL 386 (540)
Q Consensus 307 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~ 386 (540)
-|..... .. +..-.+++++.-..-|++++....|+-+++..+............++++.+++-...+++|+.+|.|..
T Consensus 124 ~G~hy~~-RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 124 YGRHYRT-RI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred cCeeeee-ec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence 2322111 11 112345566553334555556667999999888877767666678999999999999999999999999
Q ss_pred EECCCce-EEEee-------c-----CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeee
Q 009188 387 LDREAKV-ERYIE-------E-----DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 387 ~d~~~~~-~~~~~-------~-----~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (540)
||.+.+. ..... + ...|+++.|+.+|-.+++|+.+|.+.|||++........-.+..-++..+.+..
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 9998865 11111 1 234999999999999999999999999999987444444333344433333322
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
..+++.+++ .....++|||-.+|+....+. ....++.+++-|++. +++++-.++.+..|=+.......
T Consensus 282 -~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 282 -TDQQNKVVS-MDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred -cCCCceEEe-cchHHhhhcccccCCceeecc-ccCCcCceeeecCCc-eEEEecCCCcceeEEccccCCCc
Confidence 122344443 445689999999999998887 456699999999886 99999999888887776654443
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.3e-15 Score=146.78 Aligned_cols=213 Identities=13% Similarity=0.184 Sum_probs=147.6
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCC---CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CCC
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSND---RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VEE 298 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg 298 (540)
..+.+..|...+.+.+|||||+.|+.++.+ ..|++||+..+. ...+..+.+| ...++|+|||+.|+.++ .+|
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 345677888899999999999999987654 369999987542 2233334444 34689999999888765 677
Q ss_pred cEEE--EECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEEecC--CceEEEeeccccceEEEEEEccCCC
Q 009188 299 AVRR--WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMWELG--GKELECWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 299 ~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~ 373 (540)
.+.| ||+.+++. ..+..+...+....|+|||+.|+.++ .+|...+|+++ ++..... . +.. ....|+|||+
T Consensus 271 ~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~~--~~~~~SpDG~ 345 (429)
T PRK01742 271 VLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-GRG--YSAQISADGK 345 (429)
T ss_pred cEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-CCC--CCccCCCCCC
Confidence 6555 56666654 44556666788899999999877655 56777888763 3333222 2 221 4578999999
Q ss_pred EEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC-CceeeeEeeCCcCC
Q 009188 374 QIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG-EVKLVAKYKGHKRS 445 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~ 445 (540)
.++.++.++ +.+||+.++............++.|+|+|+.++.++.++.+.+|++.. .......+..+...
T Consensus 346 ~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~ 417 (429)
T PRK01742 346 TLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ 417 (429)
T ss_pred EEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC
Confidence 998887765 555898876533332223446788999999999999999888877632 22455666655543
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=7.3e-14 Score=124.02 Aligned_cols=235 Identities=13% Similarity=0.173 Sum_probs=172.2
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC--cEEEEecCCceEE
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK--SICMWELGGKELE 353 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 353 (540)
...+..+.|+.+...|..|+.|| .++|..+...........+..|..+-|+.. +++..+.+. .+++++++.+...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 34567777999998898898888 678877654433333334445666666643 555555443 5899998765554
Q ss_pred EeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceE-EE----eecCCceeEEEEcCCCCEEEEEe--cCCeEEE
Q 009188 354 CWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE-RY----IEEDQTITSFSLSRDNKFLLVNL--LNQEIHL 426 (540)
Q Consensus 354 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~----~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i 426 (540)
+..... ..|.++.++. ++++++-.+. |++||+++.+. .. ..+...+..+++++.+.+++.-+ ..|.|.+
T Consensus 82 Ce~~fp-t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIFFP-TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEecC-CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 433333 2677777754 4566655544 99999999762 11 13445566677777777888743 4789999
Q ss_pred EEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc-EEEEECCCCceeEeecCC--CCCeEEEEeCCCCCCE
Q 009188 427 WNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ-VYIWHRASCDLIGALPGH--SGAVNCVSWNPANPHM 503 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~ 503 (540)
||..+- +++..+..|.+... +..++++|.+||++|+.|+ |||+.+.+|+.+.+|+-- ...|.+++|+|++. +
T Consensus 158 ~d~~nl-~~v~~I~aH~~~lA---alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~ 232 (391)
T KOG2110|consen 158 FDTINL-QPVNTINAHKGPLA---ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-F 232 (391)
T ss_pred EEcccc-eeeeEEEecCCcee---EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-e
Confidence 999887 88889999999744 4455999999999999995 799999999999998743 24688999999996 9
Q ss_pred EEEEeCCCcEEEecCCCCC
Q 009188 504 LASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 504 l~s~~~Dg~i~iw~~~~~~ 522 (540)
|++.|..++|+||.+....
T Consensus 233 L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEecCCCeEEEEEecccc
Confidence 9999999999999998765
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2e-14 Score=127.02 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=140.2
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCC-eEEEeeCCCcEEEEECCCC---
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ-QLLTCGVEEAVRRWDVSSG--- 308 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~--- 308 (540)
.+..++|++.-..+|++..|-.|++|+-... .... .-......|+|++|-|.+. .|+.|+ .+-|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~--Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK--LKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce--ecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccc
Confidence 5667889987677889999999999986642 1111 1123456799999999654 555555 455999976431
Q ss_pred -eE----------EEEeecCCCcEEEEEEecCCCEEEEEeCC-CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEE
Q 009188 309 -NC----------LHVYEKAGLGLVSCGWHPDRKWIFSGAND-KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQII 376 (540)
Q Consensus 309 -~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 376 (540)
.. +...++| .+|+++.|.+||..+++++.+ ..|.+||.+++..........+.+.-+.|+|||.++.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1112233 589999999999999998865 4799999998887777666666899999999999999
Q ss_pred EEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 377 TMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
+++-|+..++|.....- .......+.|...+|+|+|++|+.... |.-++|.+
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSL 308 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEE
Confidence 99999999999654432 444555669999999999998877663 33444544
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=9.7e-15 Score=135.44 Aligned_cols=276 Identities=15% Similarity=0.229 Sum_probs=181.8
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCce-EEEEEecCCCCCeEEEEE-----CcCCCeEEEeeCCCcEEEEECC
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGV-TLKHKLSGHQKPVSCVSW-----SSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~-----s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
.+....++-.|.+|+..-. ..+.+|+....... ..+...........|-+| .+++--++.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 4555566667777776543 35888887632111 011111111122333344 3466677888888889888876
Q ss_pred CCeEEEEee----cCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 307 SGNCLHVYE----KAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 307 ~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
..+..+.+. ..+..++|+.|-| +...|+++-.+|.+++||..-.. .. .-.+....+++..+.....-
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~--t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GA--TAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cC--CCCcccccCCCCeeEEeeee
Confidence 533222121 2347899999999 45577778889999999872100 00 00111122344444333211
Q ss_pred CeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEE
Q 009188 382 SALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI 461 (540)
Q Consensus 382 ~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 461 (540)
+.. .++....+....+.|+.++|+|||++|++.+.||.++|||..+. .++..++..-+. +.++.|+|||+||
T Consensus 276 sk~----~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGG---LLCvcWSPDGKyI 347 (636)
T KOG2394|consen 276 SKK----TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGG---LLCVCWSPDGKYI 347 (636)
T ss_pred ccc----cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccc---eEEEEEcCCccEE
Confidence 110 01333444445669999999999999999999999999999875 444444444443 4455669999999
Q ss_pred EEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCC------------------------------------------
Q 009188 462 ASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPA------------------------------------------ 499 (540)
Q Consensus 462 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~------------------------------------------ 499 (540)
++|++|.-|.||.+..++.+..-.+|.+.|+.|+|.|-
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~ 427 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF 427 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence 99999999999999999999999999999999999830
Q ss_pred -----CCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 500 -----NPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 500 -----~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
-.+.|.|.|.|..+.+||+..-.+..
T Consensus 428 ~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 428 NRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccceEEEeecccccceEEEEecchhhccc
Confidence 01357888999999999998766655
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.2e-13 Score=134.52 Aligned_cols=233 Identities=16% Similarity=0.157 Sum_probs=152.9
Q ss_pred cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEecCC
Q 009188 254 SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE---EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR 330 (540)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (540)
.|.++|.+.. ....+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... ......+....|+|||
T Consensus 177 ~L~~~D~dG~----~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 177 QLQISDADGQ----NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDG 251 (427)
T ss_pred EEEEECCCCC----CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence 4555555321 123345677889999999999999887743 3599999998876443 3334456788999999
Q ss_pred CEEE-EEeCCCcEEEE--ecCCceEEEeeccccceEEEEEEccCCCEEEEEec-CCeEEEE--ECCCce-EEEeecCCce
Q 009188 331 KWIF-SGANDKSICMW--ELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK-ESALLLL--DREAKV-ERYIEEDQTI 403 (540)
Q Consensus 331 ~~l~-~~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~~--d~~~~~-~~~~~~~~~i 403 (540)
+.|+ +.+.+|...+| |+.++........ ........|+|||+.++..+. ++...+| +..+.. ..........
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~ 330 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN 330 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc
Confidence 9887 45677765555 5555555444332 234567789999999886654 4555555 444443 2222233345
Q ss_pred eEEEEcCCCCEEEEEecCC---eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC---cEEEEECCC
Q 009188 404 TSFSLSRDNKFLLVNLLNQ---EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS---QVYIWHRAS 477 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg---~i~iwd~~~ 477 (540)
...+|+|+|++++..+.++ .|.+||+.++. .. .+..... . ....|+|+|+.|+.++.++ .+++.+. +
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-~~-~lt~~~~-~---~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ-VT-ALTDTTR-D---ESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCC-eE-EccCCCC-c---cCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 5689999999998877654 59999987762 22 2222211 1 2234589999888877554 3666666 4
Q ss_pred CceeEeecCCCCCeEEEEeCCC
Q 009188 478 CDLIGALPGHSGAVNCVSWNPA 499 (540)
Q Consensus 478 ~~~~~~~~~h~~~v~~l~~~~~ 499 (540)
+.....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 6666677767788888999884
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1e-15 Score=139.30 Aligned_cols=230 Identities=13% Similarity=0.184 Sum_probs=192.2
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK 356 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 356 (540)
-....+.++.+|++++.|+..|.+..+|+.+++....+... ..|.++.|..+.++||++ ....++|||-.+.++.+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk 207 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLK 207 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehh
Confidence 34567899999999999999999999999999988877543 478889999888777766 4568999999888888777
Q ss_pred ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce
Q 009188 357 GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
... .|..+.|-|..-.|++++..|.+..-|+.++. ..+....+.+..++-+|-+..+-+|..+|+|.+|..... .
T Consensus 208 ~~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-e 284 (545)
T KOG1272|consen 208 RHI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-E 284 (545)
T ss_pred hcC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-c
Confidence 655 78999999999999999999999999999877 444556788889999999999999999999999998877 6
Q ss_pred eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEE
Q 009188 435 LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIR 514 (540)
Q Consensus 435 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~ 514 (540)
++..+-.|.+++..+.+ .++|+|++|.+.|..++|||++....+.++.. .-+...+++|..| ++++|....|.
T Consensus 285 PLvKiLcH~g~V~siAv---~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~ 357 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAV---DRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG---LLALSYGDHVQ 357 (545)
T ss_pred hHHHHHhcCCCcceEEE---CCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---ceeeecCCeee
Confidence 77777788888666554 89999999999999999999999887777664 4567888998765 34455556899
Q ss_pred EecC
Q 009188 515 IWGL 518 (540)
Q Consensus 515 iw~~ 518 (540)
||.=
T Consensus 358 iw~d 361 (545)
T KOG1272|consen 358 IWKD 361 (545)
T ss_pred eehh
Confidence 9963
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=9.1e-14 Score=137.70 Aligned_cols=233 Identities=15% Similarity=0.134 Sum_probs=158.9
Q ss_pred CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEecC
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE---EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (540)
..|.+||.+... ...+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... ........+..|+||
T Consensus 184 ~~l~i~D~~g~~----~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN----PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC----ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence 358888875331 23355677789999999999999988743 3699999988875433 333445567899999
Q ss_pred CCEEE-EEeCCC--cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec-CCe--EEEEECCCceE-EEeecCCc
Q 009188 330 RKWIF-SGANDK--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK-ESA--LLLLDREAKVE-RYIEEDQT 402 (540)
Q Consensus 330 ~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~-~~~~~~~~ 402 (540)
|+.++ +.+.+| .|++||+.++......... ......+|+|||+.++..+. +|. ++++|..++.. ........
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence 99776 445555 5999999887766554332 24567899999999887764 444 77777766543 23333344
Q ss_pred eeEEEEcCCCCEEEEEecCC---eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC---CcEEEEECC
Q 009188 403 ITSFSLSRDNKFLLVNLLNQ---EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED---SQVYIWHRA 476 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d---g~i~iwd~~ 476 (540)
....+|+|+|++++..+.++ .|.+||+.++ ... .+..... . . ...++++|++++..+.+ +.|++++..
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt~~~~-~--~-~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLTPGSL-D--E-SPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECCCCCC-C--C-CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 55789999999998876443 5899998765 222 2221111 1 1 22348999988776653 368888885
Q ss_pred CCceeEeecCCCCCeEEEEeCC
Q 009188 477 SCDLIGALPGHSGAVNCVSWNP 498 (540)
Q Consensus 477 ~~~~~~~~~~h~~~v~~l~~~~ 498 (540)
+.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 455666666677788889987
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=4.1e-13 Score=128.30 Aligned_cols=273 Identities=13% Similarity=0.163 Sum_probs=174.0
Q ss_pred EEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEE
Q 009188 247 ASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGW 326 (540)
Q Consensus 247 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 326 (540)
++-..+|.|.+.|..+. +....+......-..+.|+|||+++++++.||.|.++|+.+++.+..++... ...++++
T Consensus 10 V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~ 85 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAV 85 (369)
T ss_dssp EEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE
T ss_pred EEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEE
Confidence 44556799999998755 4555665544444557899999999999999999999999999999986654 5688999
Q ss_pred ecCCCEEEEEe-CCCcEEEEecCCceEEEeecc-------ccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCce---E
Q 009188 327 HPDRKWIFSGA-NDKSICMWELGGKELECWKGQ-------RTLKISDLEVTSDGKQIITMC-KESALLLLDREAKV---E 394 (540)
Q Consensus 327 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~---~ 394 (540)
++||++++++. ..+.+.++|.++.+....... ...++..+..++....++..- ..+.|.+.|..... .
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 99999998775 578999999988766554322 234677888888888666555 45889888866542 4
Q ss_pred EEeecCCceeEEEEcCCCCEEEEE-ecCCeEEEEEecCCceeeeEeeC----CcCCeeEE-------EeeeccCCCcEEE
Q 009188 395 RYIEEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGEVKLVAKYKG----HKRSRFVI-------RSCFGGLEQAFIA 462 (540)
Q Consensus 395 ~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~i-------~~~~~~~~~~~l~ 462 (540)
.............|+|++++++++ ..++.|.++|..+. +.+..+.. |......+ .+.. +..+...+
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~~~~~php~~g~vw~~-~~~~~~~~ 243 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGPGANFPHPGFGPVWAT-SGLGYFAI 243 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETTEEEEEETTTEEEEEE-EBSSSSEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccccccccccccCCCcceEEee-ccccceec
Confidence 455566778889999999988775 45778999998876 44443321 11111111 1111 11222332
Q ss_pred EeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEE---EeCCCcEEEecCCCCCcccc
Q 009188 463 SGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLAS---ASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 463 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s---~~~Dg~i~iw~~~~~~~~~~ 526 (540)
+.-....+.+||..+++.+.++....++ ..+..+|+++++.+. +...++|.++|.++.+....
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~ 309 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT 309 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE
Confidence 2233345668899999999999977666 788899999744444 35668999999999876554
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4.7e-13 Score=132.81 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=159.4
Q ss_pred CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC---CCcEEEEECCCCeEEEEeecCCCcEEEEEEecC
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV---EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (540)
..|.+||.+.. ....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+...+....|+||
T Consensus 182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 36777776532 22345678889999999999999988764 457999999888754 34455567778899999
Q ss_pred CCEEE-EEeCCCc--EEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec-C--CeEEEEECCCce-EEEeecCCc
Q 009188 330 RKWIF-SGANDKS--ICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK-E--SALLLLDREAKV-ERYIEEDQT 402 (540)
Q Consensus 330 ~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--~~i~~~d~~~~~-~~~~~~~~~ 402 (540)
|+.|+ +.+.+|. |++||+.++........ ........|+|||+.++..+. + ..|+++|..+.. .........
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCC-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 99876 4555554 88889988776655443 335667899999999887764 3 368888987765 333334556
Q ss_pred eeEEEEcCCCCEEEEEecC---CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC------CcEEEE
Q 009188 403 ITSFSLSRDNKFLLVNLLN---QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED------SQVYIW 473 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d------g~i~iw 473 (540)
+....|+|+|+.++....+ ..|.+||+.+.. ...+... .. .....|+|+|+.|+..+.+ ..++++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~--~~~lt~~-~~---~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG--ERILTSG-FL---VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc--eEeccCC-CC---CCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 7778999999999887653 357888876542 2222211 11 2233448999988765543 358888
Q ss_pred ECCCCceeEeecCCCCCeEEEEeCCC
Q 009188 474 HRASCDLIGALPGHSGAVNCVSWNPA 499 (540)
Q Consensus 474 d~~~~~~~~~~~~h~~~v~~l~~~~~ 499 (540)
|+..+.. ..+. ..+.+...+|+|-
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCCC
Confidence 8876554 4454 3455777888873
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=1.9e-13 Score=119.18 Aligned_cols=232 Identities=14% Similarity=0.179 Sum_probs=175.8
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC---eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEec-CCc
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG---NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL-GGK 350 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~ 350 (540)
-..+|+|.+|++|+..+|.+.....|.||..... +..++++.|...|++++|+|..+.|++++.|..-++|.. .++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999999999999999999999988765 467889999999999999999999999999999999998 443
Q ss_pred eEE--EeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce------EEEeecCCceeEEEEcCCCCEEEEEecCC
Q 009188 351 ELE--CWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV------ERYIEEDQTITSFSLSRDNKFLLVNLLNQ 422 (540)
Q Consensus 351 ~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 422 (540)
+-. ......+...+++.|+|.++.+++|+....|.+|-.+... .........|++++|+|++-.+++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 322 2233445589999999999999999999999999887755 23344677899999999999999999999
Q ss_pred eEEEEEec-----CCc------------eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc-eeEee
Q 009188 423 EIHLWNIE-----GEV------------KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD-LIGAL 484 (540)
Q Consensus 423 ~i~i~d~~-----~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~ 484 (540)
..+++..- ... .+...+....+ ..-. ..+++.|..|+-.+.|+.+.+-|..... .+...
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg--wvh~-v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG--WVHG-VLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC--ceee-eEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 99998752 110 11112221222 2223 3348999999999999999999977664 33344
Q ss_pred cCCCCCeEEEEeCCCCCCEEEEEeCCC
Q 009188 485 PGHSGAVNCVSWNPANPHMLASASDDR 511 (540)
Q Consensus 485 ~~h~~~v~~l~~~~~~~~~l~s~~~Dg 511 (540)
..-.-+..++.|-.+. .++.+|.|.
T Consensus 246 ~~~~lP~ls~~~ise~--~vv~ag~~c 270 (361)
T KOG1523|consen 246 ATAQLPLLSVSWISEN--SVVAAGYDC 270 (361)
T ss_pred hhccCCceeeEeecCC--ceeecCCCC
Confidence 3333677777776543 355556553
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.7e-15 Score=136.59 Aligned_cols=269 Identities=17% Similarity=0.240 Sum_probs=196.9
Q ss_pred EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEec--CCCEEEEEeCCCcEE
Q 009188 267 TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGLVSCGWHP--DRKWIFSGANDKSIC 343 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 343 (540)
.+...+..|.+.|..|.|+..|..|++|+.|..|.+||+.+++....+. +|...|....|.| +...+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3445688999999999999999999999999999999999988776664 6777888888888 456899999999999
Q ss_pred EEecC-CceE--EEeeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCCce----EEEee-cCC---ceeEEEEcCC
Q 009188 344 MWELG-GKEL--ECWKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREAKV----ERYIE-EDQ---TITSFSLSRD 411 (540)
Q Consensus 344 iwd~~-~~~~--~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~----~~~~~-~~~---~i~~~~~s~~ 411 (540)
+=.+. ++.+ ......|.++|..++.-|+. ..|.+++.|+.+.-+|++... ..... ... ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 88773 3332 23445677789999999876 457889999999999988755 11112 222 5678899996
Q ss_pred C-CEEEEEecCCeEEEEEecCCc-----eeeeEeeCCc---CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC--C--
Q 009188 412 N-KFLLVNLLNQEIHLWNIEGEV-----KLVAKYKGHK---RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS--C-- 478 (540)
Q Consensus 412 ~-~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~-- 478 (540)
. ..+++++.|..+++||.+.-. ..+.++-.+. .....|.+..++.++.-+.++-.|-.|+++...- |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 6 589999999999999986431 1122222211 1222344444465666666667778899995322 2
Q ss_pred --------ceeEe-ecCCCC--CeEEEEe-CCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCceEec
Q 009188 479 --------DLIGA-LPGHSG--AVNCVSW-NPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVHYC 536 (540)
Q Consensus 479 --------~~~~~-~~~h~~--~v~~l~~-~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v~~c 536 (540)
..+.. ++||.. .|..+-| -|... +++|||+-|.|.||+-+++++++.......|..|
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC 441 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC 441 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHHHHHhhcccceEec
Confidence 22333 778854 5777764 56664 9999999999999999999998877666667666
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.8e-13 Score=135.80 Aligned_cols=206 Identities=11% Similarity=0.104 Sum_probs=148.9
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeC---CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEE-EeeC
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSN---DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLL-TCGV 296 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~ 296 (540)
....+.+..|...+.+.+|+|||+.|+..+. +..|.+||+..+.. ..+..+.+.+.+.+|+|||+.|+ +.+.
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEEec
Confidence 3445667788889999999999999988764 46799999875521 23445666788899999998876 4455
Q ss_pred CCc--EEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC-CC--cEEEEecCCceEEEeeccccceEEEEEEccC
Q 009188 297 EEA--VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DK--SICMWELGGKELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 297 dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
++. |.+||+.+++.. .+..+........|+|||+.|+..+. +| .|+++|+.++........ ...+....|+|+
T Consensus 267 ~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~Spd 344 (435)
T PRK05137 267 GGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPR 344 (435)
T ss_pred CCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCC
Confidence 554 778898887654 45455556677899999998887764 33 688889887766555433 234667889999
Q ss_pred CCEEEEEecC---CeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecC------CeEEEEEecCC
Q 009188 372 GKQIITMCKE---SALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN------QEIHLWNIEGE 432 (540)
Q Consensus 372 ~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~ 432 (540)
|+.++....+ ..|.+||..+...........+....|+|+|+.++..+.+ ..++++|+.+.
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 9999887643 3688889876654444444467789999999988776543 25777777654
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.1e-13 Score=134.41 Aligned_cols=213 Identities=13% Similarity=0.162 Sum_probs=145.0
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeC---CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCC-
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSN---DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEE- 298 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg- 298 (540)
.+.+..+...+.+.+|||||+.|+..+. +..+.+|++..+. ...+..+ .+.+..+.|+|||+.|+.. +.+|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~---~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASF---PRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCC---CCCcCCeEECCCCCEEEEEEcCCCC
Confidence 3445556778999999999999987642 3568889887542 2222233 3335568999999988865 3444
Q ss_pred -cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-C--cEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 299 -AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND-K--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 299 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
.|.+||+.+++..... .+...+....|+|||+.|+.++.+ + .|+.+|+.++........ ........|+|||+.
T Consensus 267 ~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 267 LNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKF 344 (429)
T ss_pred cEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCE
Confidence 4899999888765443 444567889999999988877654 4 455557766655444332 224567889999999
Q ss_pred EEEEecC---CeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCe---EEEEEecCCceeeeEeeCCcC
Q 009188 375 IITMCKE---SALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQE---IHLWNIEGEVKLVAKYKGHKR 444 (540)
Q Consensus 375 l~~~~~d---~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~ 444 (540)
++..+.+ ..+.+||+.+................|+|||+.++.++.++. +.++++.+. ....+..+..
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~--~~~~l~~~~~ 418 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDG 418 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC--CeEECccCCC
Confidence 9877643 358889988776444433334457889999999999887764 666676543 3344444444
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=5.8e-13 Score=116.13 Aligned_cols=233 Identities=13% Similarity=0.223 Sum_probs=154.8
Q ss_pred eEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCC--cEEEEEEecCCCEEE-EEeCC------CcEEEEecCC
Q 009188 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGL--GLVSCGWHPDRKWIF-SGAND------KSICMWELGG 349 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~d------g~i~iwd~~~ 349 (540)
..+++|+.|..-+++|..+| .+||+.+--+.......+.. .+..+-| -.++++ +|+.+ ..|.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 45589999999888887776 89998865332222222222 2222222 233444 44443 3699999432
Q ss_pred ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEE---eecCCceeEEEEcCCCCEEEE-EecCCe
Q 009188 350 KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERY---IEEDQTITSFSLSRDNKFLLV-NLLNQE 423 (540)
Q Consensus 350 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~---~~~~~~i~~~~~s~~~~~l~~-~~~dg~ 423 (540)
..... ......+|.++.+.++ .+++ --.+.|++|...... ... ........+++-+.+..+|+. |..-|.
T Consensus 85 ~~~i~-el~f~~~I~~V~l~r~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCII-ELSFNSEIKAVKLRRD--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEE-EEEeccceeeEEEcCC--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 22222 2223348999998875 3433 346789999987533 221 122333444433334455555 445799
Q ss_pred EEEEEecCCce-eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc-EEEEECCCCceeEeecC--CCCCeEEEEeCCC
Q 009188 424 IHLWNIEGEVK-LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ-VYIWHRASCDLIGALPG--HSGAVNCVSWNPA 499 (540)
Q Consensus 424 i~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~ 499 (540)
|++-|+..... ....+..|...+.++. .+.+|..+||+|..|+ |+|||..+|.++.+++- ....|.+++|+|+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~---Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVA---LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEE---EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 99999976522 3467788888755544 4889999999999996 89999999999999874 2357999999999
Q ss_pred CCCEEEEEeCCCcEEEecCCCCC
Q 009188 500 NPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 500 ~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
.. +|+.+|+-|+|.|+.++...
T Consensus 238 ~s-~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 238 SS-WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cc-EEEEEcCCCeEEEEEeecCC
Confidence 96 99999999999999987644
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.61 E-value=2.8e-13 Score=119.15 Aligned_cols=248 Identities=18% Similarity=0.331 Sum_probs=176.3
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecC--CceEEEEEecCCC------------CCeEEEEECcCC--CeEEE
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN--GGVTLKHKLSGHQ------------KPVSCVSWSSDD--QQLLT 293 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~--~~~~~~~~~~~h~------------~~v~~l~~s~~~--~~l~s 293 (540)
..+-|.++.|..+|.+||||..+|.|.++.-+.. +.......++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 4568999999999999999999999999965422 1233555566664 358889999865 46677
Q ss_pred eeCCCcEEEEECCCCeEE-----------------------------------EEe-ecCCCcEEEEEEecCCCEEEEEe
Q 009188 294 CGVEEAVRRWDVSSGNCL-----------------------------------HVY-EKAGLGLVSCGWHPDRKWIFSGA 337 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~l~~~~ 337 (540)
.+.|.+|++|.+...... +.+ ..|+.-|.++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 788999999987542110 011 15677889999999998888764
Q ss_pred CCCcEEEEecCC----ceEEEeeccc----cceEEEEEEccCC-CEEEEEecCCeEEEEECCCce-----EEEe------
Q 009188 338 NDKSICMWELGG----KELECWKGQR----TLKISDLEVTSDG-KQIITMCKESALLLLDREAKV-----ERYI------ 397 (540)
Q Consensus 338 ~dg~i~iwd~~~----~~~~~~~~~~----~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~-----~~~~------ 397 (540)
|=.|.+|++.- ..+....... ..-|++..|+|.. +.++-.+..|+|++.|++... ....
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56799999842 2222222211 1247788888864 677888899999999998422 1111
Q ss_pred -------ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC------------CeeEEEeeeccCCC
Q 009188 398 -------EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR------------SRFVIRSCFGGLEQ 458 (540)
Q Consensus 398 -------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~ 458 (540)
+.-..|..+.|+++|+|+++-. --+|++||+....+++.++..|.. .++.---|.++.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 1235678899999999999865 357999999777788888877652 22222234447788
Q ss_pred cEEEEeeCCCcEEEEECCCCc
Q 009188 459 AFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~~~~ 479 (540)
.++++|+..+.+++++...|.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEecccccceEEEecCCCCc
Confidence 899999999999999965543
No 228
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.60 E-value=1.2e-13 Score=121.57 Aligned_cols=250 Identities=15% Similarity=0.232 Sum_probs=176.8
Q ss_pred CCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 219 ~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
..+..++.++||.+.|+....-|-..-+++.+.|.+++||--...++.- .........+++++.+.++...|+.|-..|
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w-psI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW-PSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccC-chhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 3456678899999999999999988889999999999999644332221 112223457799999999999999999999
Q ss_pred cEEEEECC----CCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce-EEEeeccccceEEEEEEccCCC
Q 009188 299 AVRRWDVS----SGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE-LECWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 299 ~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~ 373 (540)
++.-+.+. .....+.+..|...+..+.|+....++++.+.|..+.-.-.+.+. +-.+.... ..+++.+.-.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~-- 166 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL-- 166 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE--
Confidence 99888654 334566677889999999999989999999999876433333221 11110000 0011111111
Q ss_pred EEEEEecCCeEEEEECCCc----eEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEE
Q 009188 374 QIITMCKESALLLLDREAK----VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVI 449 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 449 (540)
+...|...|.+....+... .....+|...+.+++|.|....+++|..|..+.+||+.........+.+|...+..+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 3445555555544443322 255667899999999999999999999999999999988766667777777664433
Q ss_pred EeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 450 RSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
.. -+.-+.+.+++.||.|.+||.+
T Consensus 247 ~~---~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 247 SY---AQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hh---hhhheeeeeccCCCeEEEEecc
Confidence 22 3445678999999999999976
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.6e-13 Score=127.09 Aligned_cols=262 Identities=12% Similarity=0.119 Sum_probs=178.6
Q ss_pred CCCCCeEEEEECcCCCeEEE-eeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE
Q 009188 274 GHQKPVSCVSWSSDDQQLLT-CGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL 352 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 352 (540)
.|....+.|..+|||+|+++ |...-.|++||+.+-.....-......|.-.-.+.|-..++.-..|.+|-+...-+...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 46677889999999998765 45677899999976554332222233344444444555666667777777665433222
Q ss_pred EEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 353 ECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 353 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
....+. .-.+++++.-..-+++++....|+-+++..+. ..+....+.++++.+++...+|++|+.+|.|..||.+
T Consensus 129 -~~RIP~--~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 -RTRIPK--FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred -eeecCc--CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111111 34567777666667777778889999998877 3333455899999999999999999999999999998
Q ss_pred CCceeeeEeeC------CcC--CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec-CCCCCeEEEEeCCCCC
Q 009188 431 GEVKLVAKYKG------HKR--SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP-GHSGAVNCVSWNPANP 501 (540)
Q Consensus 431 ~~~~~~~~~~~------~~~--~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~ 501 (540)
.. ..+.++.. +.. ....++...++.+|-.+++|+.+|.|+|||+++.+++..-. +..-+|..+.|.+.+.
T Consensus 206 ~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 206 DK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 76 33333321 111 11123444447779999999999999999999998875543 2346899999987643
Q ss_pred C-EEEEEeCCCcEEEecCCCCCccccccCCCce----EeccCCC
Q 009188 502 H-MLASASDDRTIRIWGLKDLNVKRKDCHSNGV----HYCNGGT 540 (540)
Q Consensus 502 ~-~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v----~~c~~g~ 540 (540)
. .++|. +...++|||-.+|+.........++ .+|++|+
T Consensus 285 q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGM 327 (703)
T ss_pred CceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCce
Confidence 2 44444 4557999999999988765554443 6777775
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=2.3e-11 Score=116.63 Aligned_cols=279 Identities=11% Similarity=0.184 Sum_probs=181.5
Q ss_pred EEEEeCC----CcEEEEEeecCC-ceEEEEEecCCCCCeEEEEECcCCCeEEEeeC----CCcEEEEECCCC--e--EEE
Q 009188 246 LASSSND----RSAIIWEVDLNG-GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV----EEAVRRWDVSSG--N--CLH 312 (540)
Q Consensus 246 l~tg~~d----g~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~--~--~~~ 312 (540)
++.|+.. +.|.+|+++... ........ .-......++++|++++|.++.. ++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4555555 689999995433 33333332 23455677899999999999876 468999888663 3 334
Q ss_pred EeecCCCcEEEEEEecCCCEEEEEeC-CCcEEEEecCC-ceEEEe---e----------ccccceEEEEEEccCCCEEEE
Q 009188 313 VYEKAGLGLVSCGWHPDRKWIFSGAN-DKSICMWELGG-KELECW---K----------GQRTLKISDLEVTSDGKQIIT 377 (540)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~---~----------~~~~~~v~~i~~~~~~~~l~~ 377 (540)
...........++++|++++++++.. +|.|.++++.. +.+... . ........++.++|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 44445566778999999999998875 78999999965 333322 1 122346889999999999887
Q ss_pred Ee-cCCeEEEEECCCce--E-----EEeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEec--CC-ceeeeEeeCC---
Q 009188 378 MC-KESALLLLDREAKV--E-----RYIEEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIE--GE-VKLVAKYKGH--- 442 (540)
Q Consensus 378 ~~-~d~~i~~~d~~~~~--~-----~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~--~~-~~~~~~~~~~--- 442 (540)
.. ....|.+|++.... . .........+.+.|+|+++++.+.. .++.|.+|++. .. ..........
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 65 45678999886643 1 1234567789999999999887665 47889999998 22 1122222211
Q ss_pred -cCCeeEEEeeeccCCCcEEEEee-CCCcEEEEECC--CCce--eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 443 -KRSRFVIRSCFGGLEQAFIASGS-EDSQVYIWHRA--SCDL--IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 443 -~~~~~~i~~~~~~~~~~~l~s~s-~dg~i~iwd~~--~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
...... ..+..+|+|++|+++. ..+.|.+|++. ++++ +..+.......+.++++|+|..++++...++.|.+|
T Consensus 241 ~~~~~~~-~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 241 FTGENAP-AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp SCSSSSE-EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccCCc-eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 111112 2223389999987766 45689999983 3443 344443345589999999998555566678899999
Q ss_pred cC--CCCCcccc
Q 009188 517 GL--KDLNVKRK 526 (540)
Q Consensus 517 ~~--~~~~~~~~ 526 (540)
++ ++|.+...
T Consensus 320 ~~d~~tG~l~~~ 331 (345)
T PF10282_consen 320 DIDPDTGKLTPV 331 (345)
T ss_dssp EEETTTTEEEEE
T ss_pred EEeCCCCcEEEe
Confidence 76 56665543
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.4e-13 Score=119.97 Aligned_cols=261 Identities=17% Similarity=0.215 Sum_probs=183.7
Q ss_pred cCcEEEEEEecCCC--eEEEEeCCCcEEEEEeecCCceE---EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 231 TDEVWFLQFSHNGK--YLASSSNDRSAIIWEVDLNGGVT---LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 231 ~~~V~~~~~sp~g~--~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
...|+.++|.-+++ .+...+.|..+..+.+....-.. .........++|..+... +..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677777765544 45555466666666654321111 111334455667666654 347888889999999998
Q ss_pred CCCe----EEEEeecCCCcEEEEEEecCCC-EEEEEeCC--CcEEEEecCCceEEEeec--c--------ccceEEEEEE
Q 009188 306 SSGN----CLHVYEKAGLGLVSCGWHPDRK-WIFSGAND--KSICMWELGGKELECWKG--Q--------RTLKISDLEV 368 (540)
Q Consensus 306 ~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~iwd~~~~~~~~~~~--~--------~~~~v~~i~~ 368 (540)
..+. .+..+.. ..++..+.-++... .+++|+.. ..+.+||+.+.+. .|.. . -...++++.|
T Consensus 133 k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred cCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeeccccee-eeeccCCCCccccceeeeeecccee
Confidence 8543 2223322 34666676676544 45558888 7899999976522 2221 1 1124678889
Q ss_pred ccC--CCEEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc
Q 009188 369 TSD--GKQIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 369 ~~~--~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
.+. ...|++++.-+.+++||.+.+. ..+.....+++++...|+++++++|...|.+..||+++.......+.+..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 888 8999999999999999998755 44555688999999999999999999999999999999855555588888
Q ss_pred CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCC
Q 009188 444 RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPA 499 (540)
Q Consensus 444 ~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 499 (540)
+.+..+.+ .|.+.++++++-|..|+|+|+.+.+++...- -.+.++++-+.++
T Consensus 291 Gsirsih~---hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 291 GSIRSIHC---HPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred CCcceEEE---cCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 87666655 7888999999999999999999977765443 2355666666543
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=6e-13 Score=115.44 Aligned_cols=153 Identities=15% Similarity=0.301 Sum_probs=109.8
Q ss_pred EEEEEecCCCeEEEEeC----------CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe--eCCCcEEE
Q 009188 235 WFLQFSHNGKYLASSSN----------DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC--GVEEAVRR 302 (540)
Q Consensus 235 ~~~~~sp~g~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~--~~dg~i~i 302 (540)
-.+.|+|+|++|+.-.. -|...||.++..+.......+ ...++|.+++|+|+|+.+++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 36889999998775432 245677777544322222222 234579999999999987655 35678999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC---CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 303 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND---KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 303 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
||++ ++.+..+. ...+..+.|+|+|+++++++.+ |.|.+||.++.+......+. .++.++|+|+|++++++.
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATAT 162 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEE
Confidence 9996 66666664 4577899999999999998754 67999999976665554433 578999999999999886
Q ss_pred c------CCeEEEEECCCce
Q 009188 380 K------ESALLLLDREAKV 393 (540)
Q Consensus 380 ~------d~~i~~~d~~~~~ 393 (540)
. |+.+++|+..+..
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 4 5566777765543
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=7.3e-13 Score=131.28 Aligned_cols=204 Identities=16% Similarity=0.130 Sum_probs=143.1
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCC---CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEE-eeCC
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSND---RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLT-CGVE 297 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~d 297 (540)
...+.+..|...+.+.+|+|||+.|+.++.+ ..|.+||+..+.. . .+..+.+...+..|+|||+.|+. .+.+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~---~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-E---LVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-E---EeccCCCCccCceECCCCCEEEEEEeCC
Confidence 3445566778889999999999999987743 4689999875422 2 23334445567899999997764 4555
Q ss_pred C--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC-CCc--EEEEecCCceEEEeeccccceEEEEEEccCC
Q 009188 298 E--AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DKS--ICMWELGGKELECWKGQRTLKISDLEVTSDG 372 (540)
Q Consensus 298 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 372 (540)
| .|.+||+.+++.. .+..+.......+|+|||+.|+.++. +|. |+++|+.++......... ......+|+|+|
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG 347 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVSPDG 347 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCC
Confidence 5 5999999888754 34455445567899999998887764 444 777777766554443222 234568999999
Q ss_pred CEEEEEecCC---eEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecC---CeEEEEEecC
Q 009188 373 KQIITMCKES---ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN---QEIHLWNIEG 431 (540)
Q Consensus 373 ~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~ 431 (540)
+.++..+.++ .|.+||..++......+........|+|+|+.++..+.+ +.+.++++.+
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 9998776443 689999987765454444455678999999988877653 3577777754
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.1e-12 Score=121.10 Aligned_cols=276 Identities=16% Similarity=0.240 Sum_probs=177.0
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-----eCC-----CcE
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-----GVE-----EAV 300 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----~~d-----g~i 300 (540)
..++...++|++|+++|.+.. ..++|++..... ...+... ..++++.|+|.|.+|.+- ..+ -.+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~---~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLK---VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCc---EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCce
Confidence 344788999999998887764 579999887553 2222222 268999999999998763 122 347
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC---------
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD--------- 371 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--------- 371 (540)
.+|+++++.....+......-++..|+.|..+. +--..+.+.+|++.+...... ..+...++.+.++|.
T Consensus 108 ~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred eeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEE
Confidence 899999966655555443333688888876533 333345688888754221111 111223444444443
Q ss_pred -------------------------------------------CCEEE-EEec-----------CCeEEEEECCCce-EE
Q 009188 372 -------------------------------------------GKQII-TMCK-----------ESALLLLDREAKV-ER 395 (540)
Q Consensus 372 -------------------------------------------~~~l~-~~~~-----------d~~i~~~d~~~~~-~~ 395 (540)
|.-|+ .++. ..+++++++.+.. ..
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 22211 1110 1234444444322 22
Q ss_pred EeecCCceeEEEEcCCCCEEEE--EecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC---CcE
Q 009188 396 YIEEDQTITSFSLSRDNKFLLV--NLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED---SQV 470 (540)
Q Consensus 396 ~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d---g~i 470 (540)
.....++|.++.|+|+++-+++ |..-..+.|||++.. ++..+..... ...+++|.|++++.++-+ |.|
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--~v~df~egpR-----N~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--PVFDFPEGPR-----NTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--EeEeCCCCCc-----cceEECCCCCEEEEeecCCCCCce
Confidence 2335789999999999987766 456788999999874 4444432222 134559999999887764 789
Q ss_pred EEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC------CCcEEEecCCCCCcc
Q 009188 471 YIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD------DRTIRIWGLKDLNVK 524 (540)
Q Consensus 471 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------Dg~i~iw~~~~~~~~ 524 (540)
-|||+.+.+++..+..-. -+-+.|+|||. +++|+.. |+.++||++....+.
T Consensus 339 EvwDv~n~K~i~~~~a~~--tt~~eW~PdGe-~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAAN--TTVFEWSPDGE-YFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEEeccchhhccccccCC--ceEEEEcCCCc-EEEEEeccccEEecCCeEEEEecCceee
Confidence 999999999888887543 45678999997 6666653 788999999755443
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=6e-14 Score=130.30 Aligned_cols=140 Identities=14% Similarity=0.267 Sum_probs=115.7
Q ss_pred cCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecC--------------CceE-----------EEEEecCCCCCeEEEEE
Q 009188 231 TDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLN--------------GGVT-----------LKHKLSGHQKPVSCVSW 284 (540)
Q Consensus 231 ~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~--------------~~~~-----------~~~~~~~h~~~v~~l~~ 284 (540)
+..|+|+.|-|.+. .++.+-.+|.+++||.... ..+. ++..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999999544 5666677899999975321 1111 11112223457889999
Q ss_pred CcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEE
Q 009188 285 SSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKIS 364 (540)
Q Consensus 285 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 364 (540)
+|||++||+.+.||.++|+|..+.+.+..++.--+...|++|+|||++|++|++|.-|.||.+..+++...-..|.+.|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999888888777778899999999999999999999999999999999999999999999
Q ss_pred EEEEcc
Q 009188 365 DLEVTS 370 (540)
Q Consensus 365 ~i~~~~ 370 (540)
.++|+|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999997
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1e-12 Score=129.74 Aligned_cols=203 Identities=12% Similarity=0.135 Sum_probs=136.7
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCC---CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEE-eeCC
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSND---RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLT-CGVE 297 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~d 297 (540)
...+.+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+..+.. . .+....+.+.+.+|+|||+.|+. .+.+
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~---~l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-R---VVANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-E---EeecCCCCccceEECCCCCEEEEEEccC
Confidence 3344556788899999999999999887643 3589999875522 2 22333455678899999998874 5677
Q ss_pred CcEEEE--ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC-CCcEEEEe--cCCceEEEeeccccceEEEEEEccCC
Q 009188 298 EAVRRW--DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DKSICMWE--LGGKELECWKGQRTLKISDLEVTSDG 372 (540)
Q Consensus 298 g~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd--~~~~~~~~~~~~~~~~v~~i~~~~~~ 372 (540)
|...|| |+.++. ...+..+........|+|||+.|+..+. +|...+|. +.++........ ........|+|||
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG 339 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDG 339 (427)
T ss_pred CCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCC
Confidence 776665 454444 4455555555667889999998886654 45555554 455444333322 1234467899999
Q ss_pred CEEEEEecCC---eEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCC---eEEEEEec
Q 009188 373 KQIITMCKES---ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQ---EIHLWNIE 430 (540)
Q Consensus 373 ~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~ 430 (540)
++++..+.++ .|.+||..+................|+|+|+.|+.++.++ .+.+.+..
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 9998777554 6999999877644444444457789999999988877644 24455553
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=7.1e-11 Score=113.26 Aligned_cols=264 Identities=14% Similarity=0.220 Sum_probs=173.7
Q ss_pred CcCcEEEEEEecCCCeEEEEeC----CCcEEEEEeecC-CceEEEEEecCCCCCeEEEEECcCCCeEEEeeC-CCcEEEE
Q 009188 230 HTDEVWFLQFSHNGKYLASSSN----DRSAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV-EEAVRRW 303 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iw 303 (540)
-......++++|++++|.++.. +|.|..|++... +....+............++++|++++|+++.. +|.|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 3445667899999999998876 579999999876 556666665545566778999999999999874 8899999
Q ss_pred ECCC-CeEEEE---ee----------cCCCcEEEEEEecCCCEEEEEeCC-CcEEEEecCCce--E---EEeeccccceE
Q 009188 304 DVSS-GNCLHV---YE----------KAGLGLVSCGWHPDRKWIFSGAND-KSICMWELGGKE--L---ECWKGQRTLKI 363 (540)
Q Consensus 304 d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~--~---~~~~~~~~~~v 363 (540)
++.. |..... +. .......++.++|+++++++.... ..|.+|+++... + ...........
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 9987 443332 21 123457889999999988887543 379999996543 3 22333445678
Q ss_pred EEEEEccCCCEEEEEe-cCCeEEEEECC--CceEE---Eee-------cCCceeEEEEcCCCCEEEEEec-CCeEEEEEe
Q 009188 364 SDLEVTSDGKQIITMC-KESALLLLDRE--AKVER---YIE-------EDQTITSFSLSRDNKFLLVNLL-NQEIHLWNI 429 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~-~d~~i~~~d~~--~~~~~---~~~-------~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~ 429 (540)
+.+.|+|+++++++.+ .++.|.+++.. ..... ... .......+.++|+|++|.++.. .+.|.+|++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 9999999999887665 56789998887 33211 111 1125778999999999888764 678999999
Q ss_pred cCC---ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee-CCCcEEEEEC--CCCceeEeec-CCCCCeEEEEe
Q 009188 430 EGE---VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS-EDSQVYIWHR--ASCDLIGALP-GHSGAVNCVSW 496 (540)
Q Consensus 430 ~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s-~dg~i~iwd~--~~~~~~~~~~-~h~~~v~~l~~ 496 (540)
... ...+..+...... -+.+.++++|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 275 d~~~g~l~~~~~~~~~G~~---Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKF---PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp CTTTTTEEEEEEEEESSSS---EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ecCCCceEEEEEEeCCCCC---ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 432 2233333322221 12233389999998876 5568999876 5666543322 12344556654
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=2.9e-11 Score=105.66 Aligned_cols=235 Identities=13% Similarity=0.126 Sum_probs=153.7
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CC------CcEEEEEC
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VE------EAVRRWDV 305 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d------g~i~iwd~ 305 (540)
...+++|+.|...++.|..+| .+||+++.- +.......+.+.+.-+..--..++|+..+ .+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~---ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF---KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch---hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345599999999999998776 899998742 11111222222222122111334555433 22 46999997
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEEE-eeccc-cceEEEEEEccCCCEEEE-EecC
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELEC-WKGQR-TLKISDLEVTSDGKQIIT-MCKE 381 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-~~~~~-~~~v~~i~~~~~~~~l~~-~~~d 381 (540)
...+++.++ ....+|.++.+.++ .|++.- .+.|++|.... .+... +.... .....+++-..+...|+. |..-
T Consensus 83 ~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 83 LKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 677777777 44568999999866 566554 46799999863 22222 22111 112333333333333433 3366
Q ss_pred CeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEecCCe-EEEEEecCCceeeeEeeCCcCCeeEEEeeeccC
Q 009188 382 SALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNLLNQE-IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL 456 (540)
Q Consensus 382 ~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 456 (540)
|.|.+-|+.... .....|...|.+++++.+|..+++++..|+ |+|||..++ ..+..+....... .+.+..++|
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A-~iy~iaFSp 236 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRA-DIYCIAFSP 236 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchh-eEEEEEeCC
Confidence 899999987644 456689999999999999999999999997 799999988 4455554332221 233445599
Q ss_pred CCcEEEEeeCCCcEEEEECCC
Q 009188 457 EQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 457 ~~~~l~s~s~dg~i~iwd~~~ 477 (540)
+..+|+++|+.|++.||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998764
No 239
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-12 Score=121.94 Aligned_cols=275 Identities=17% Similarity=0.282 Sum_probs=178.4
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC-----------CCcEEE
Q 009188 234 VWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV-----------EEAVRR 302 (540)
Q Consensus 234 V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----------dg~i~i 302 (540)
=+-+.|||-|.||+|-..-| |.+|--. ....++.+ .|. .|.-+.|||..+||+|-+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~---~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGE---SFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCc---cHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 45789999999999988766 8899322 22222222 344 4889999999999999753 146999
Q ss_pred EECCCCeEEEEeecC--CCcEEE-EEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 303 WDVSSGNCLHVYEKA--GLGLVS-CGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 303 wd~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
||+.+|...+.+... ...++. ..||.|++++|.-..+ +|.||+.....+.......-..|....|+|.+..|+.-.
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999999998888763 333333 5899999999877664 588998876555444444445677777777766665332
Q ss_pred cC----------------C-----------------------------------------eEEEEECCCce--EEEeecC
Q 009188 380 KE----------------S-----------------------------------------ALLLLDREAKV--ERYIEED 400 (540)
Q Consensus 380 ~d----------------~-----------------------------------------~i~~~d~~~~~--~~~~~~~ 400 (540)
.. . .+.|+.++.+. .......
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 11 0 01111111111 1122234
Q ss_pred CceeEEEEcCCCCEEEEEec---CCeEEEEEecCCc---eeeeEeeCCcCCeeEEEeeeccCCCcEEEEe---eCCCcEE
Q 009188 401 QTITSFSLSRDNKFLLVNLL---NQEIHLWNIEGEV---KLVAKYKGHKRSRFVIRSCFGGLEQAFIASG---SEDSQVY 471 (540)
Q Consensus 401 ~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~---s~dg~i~ 471 (540)
..|...+|-|.|+.+++-+. ..++.+|.+++.. .++..+.. ......+++|.|++++.+ |..|.+.
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-----cccceEEEcCCCcEEEEEEecccccceE
Confidence 56778899999988776543 4578889887421 22333322 123355679999998775 4578999
Q ss_pred EEECCCCceeEee-cCCCCCeEEEEeCCCCCCEEEEEeC------CCcEEEecCCCCC
Q 009188 472 IWHRASCDLIGAL-PGHSGAVNCVSWNPANPHMLASASD------DRTIRIWGLKDLN 522 (540)
Q Consensus 472 iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~------Dg~i~iw~~~~~~ 522 (540)
++|........+- ..| ...+.+.|.|.|. +++|++. |.--++|+++...
T Consensus 521 F~D~~~a~~k~~~~~eh-~~at~veWDPtGR-YvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 521 FYDTDYADLKDTASPEH-FAATEVEWDPTGR-YVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred EEecchhhhhhccCccc-cccccceECCCCC-EEEEeeehhhhccccceEEEEeecHH
Confidence 9998753332221 124 3467899999995 8888775 5557888887543
No 240
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.3e-13 Score=116.77 Aligned_cols=266 Identities=14% Similarity=0.166 Sum_probs=178.4
Q ss_pred HHhhcccccCCCCCCccccCCCcCcCCCCcceEEecc-cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEE
Q 009188 192 QREACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQ-GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKH 270 (540)
Q Consensus 192 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~ 270 (540)
|....++.....+.+.+|.-.. .+....+. .|...|+.+..-|+ ..+.+-+.|+.+.+|++..+.-
T Consensus 23 qa~~rL~sg~~~G~V~~w~lqt-------~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~----- 89 (323)
T KOG0322|consen 23 QANERLMSGLSVGIVKMWVLQT-------ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF----- 89 (323)
T ss_pred ccchhhhcccccceEEEEEeec-------CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce-----
Confidence 3334467777777777775332 33444555 57788999999887 4688889999999999975421
Q ss_pred EecCCCCCeEEEEECcC-----C----CeEEEeeCCCc-EEEEECCCCeEEEEee----cCCCcEEEEEEec-CCC--EE
Q 009188 271 KLSGHQKPVSCVSWSSD-----D----QQLLTCGVEEA-VRRWDVSSGNCLHVYE----KAGLGLVSCGWHP-DRK--WI 333 (540)
Q Consensus 271 ~~~~h~~~v~~l~~s~~-----~----~~l~s~~~dg~-i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~-~~~--~l 333 (540)
...|.-.++++.|.+. + ..++.-+.... +.+-|......+.... ...+.+.+..+.. ++. .+
T Consensus 90 -i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 90 -ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred -EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 1223444555555432 1 11111111100 1222211111122111 2234566666443 333 46
Q ss_pred EEEeCCCcEEEEecCCce----------EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce------EEEe
Q 009188 334 FSGANDKSICMWELGGKE----------LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV------ERYI 397 (540)
Q Consensus 334 ~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~------~~~~ 397 (540)
++|..+|.|.+||+.++. ...-...+..++.++.+.+.-..=++|+.+..+..|.+.... ....
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 788899999999998752 222234566789999999877777888888889998876542 2333
Q ss_pred ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC
Q 009188 398 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 398 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
.....+..+.+-||++.+++++.|+.|++|..++. .++..++-|...+..+ .++|+..++|+++.|++|.+|++
T Consensus 249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~v---Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAV---AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ecCCCccceEEccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEE---EeCCCCchhhhccCCceEEeeec
Confidence 45567889999999999999999999999999998 8888888898764443 44889899999999999999986
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=8.8e-13 Score=114.37 Aligned_cols=150 Identities=14% Similarity=0.230 Sum_probs=109.8
Q ss_pred EEEEECcCCCeEEEeeC----------CCcEEEEECCC-CeEEEEeec-CCCcEEEEEEecCCCEEEEE--eCCCcEEEE
Q 009188 280 SCVSWSSDDQQLLTCGV----------EEAVRRWDVSS-GNCLHVYEK-AGLGLVSCGWHPDRKWIFSG--ANDKSICMW 345 (540)
Q Consensus 280 ~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw 345 (540)
..+.|+++|++|+.-.. -+...+|.++. +.....+.. ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999988776433 12345555522 233444433 34579999999999987654 456799999
Q ss_pred ecCCceEEEeeccccceEEEEEEccCCCEEEEEec---CCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEec--
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK---ESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLL-- 420 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-- 420 (540)
|++...+..+. ...+..+.|+|+|+++++++. .|.+.+||.++...........++.++|+|+|+++++++.
T Consensus 89 d~~~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVKGKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCcccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 99855554443 346788999999999999874 4679999999877555555556899999999999999875
Q ss_pred ----CCeEEEEEecCC
Q 009188 421 ----NQEIHLWNIEGE 432 (540)
Q Consensus 421 ----dg~i~i~d~~~~ 432 (540)
|+.++||+..+.
T Consensus 166 r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQGR 181 (194)
T ss_pred ceeccccEEEEEecCe
Confidence 678899998754
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=3.4e-12 Score=111.70 Aligned_cols=270 Identities=14% Similarity=0.276 Sum_probs=181.0
Q ss_pred cCcEEEEEEecCCCeEEE-EeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEE-EeeCCCcEEEEECCCC
Q 009188 231 TDEVWFLQFSHNGKYLAS-SSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLL-TCGVEEAVRRWDVSSG 308 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~ 308 (540)
-+.|.-+.|..|..+++. ...|+.|.+|++... +-...+.....++.+++|||||+.++ +...+-.|.||.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 367888999998877665 477889999999743 45556777788999999999996555 5567888999999887
Q ss_pred eEEEEeecCCCcEEEEEEecCCCEEEEEeCC------------------------------------CcEEEEecCCceE
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRKWIFSGAND------------------------------------KSICMWELGGKEL 352 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------------------g~i~iwd~~~~~~ 352 (540)
+.... +-.+..+..++|+|||++.+.++.. ..+.+||---. .
T Consensus 125 ~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-y 202 (447)
T KOG4497|consen 125 KGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-Y 202 (447)
T ss_pred eeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-h
Confidence 65443 2334456778888888776655432 12333332100 0
Q ss_pred EEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC---------------ce------------------EEE---
Q 009188 353 ECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA---------------KV------------------ERY--- 396 (540)
Q Consensus 353 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~---------------~~------------------~~~--- 396 (540)
....-...-.+..++|+|.++.+++|+.|+.+++.+--+ .. ..+
T Consensus 203 kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~ 282 (447)
T KOG4497|consen 203 KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT 282 (447)
T ss_pred eeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence 001112223688899999999999999999887754110 00 000
Q ss_pred --------------------------------eecCCceeEEEEcCCCCEEEEEec--CCeEEEEEecCCceeeeEeeCC
Q 009188 397 --------------------------------IEEDQTITSFSLSRDNKFLLVNLL--NQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 397 --------------------------------~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
......+.-++|++|..++++-.. .+.+-+||++.. +....+. .
T Consensus 283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-~l~avLi-Q 360 (447)
T KOG4497|consen 283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-KLHAVLI-Q 360 (447)
T ss_pred ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-hhhhhhh-h
Confidence 001223556899999999998654 467899999864 2222221 1
Q ss_pred cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCc
Q 009188 443 KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRT 512 (540)
Q Consensus 443 ~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~ 512 (540)
.. .++...|.|....++.+.....+++|.......+.. ++..-.|..+.|+-+|. .++-+|.|..
T Consensus 361 k~---piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~-~i~l~~kDaf 425 (447)
T KOG4497|consen 361 KH---PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGE-FIVLCGKDAF 425 (447)
T ss_pred cc---ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCc-EEEEEcCCce
Confidence 22 255666688888888888778899998766555443 33447899999999997 7888888854
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=2e-11 Score=121.43 Aligned_cols=232 Identities=16% Similarity=0.163 Sum_probs=153.2
Q ss_pred CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEecC
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE---EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (540)
..|.++|.+... ...+..+...+.+.+|+|+|++|+.++.+ ..|++||+.+++.... ..+...+.+++|+||
T Consensus 170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence 356677664321 23345567789999999999999987654 4799999998865443 344455677899999
Q ss_pred CCEEEE-EeCCC--cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC-C--eEEEEECCCce-EEEeecCCc
Q 009188 330 RKWIFS-GANDK--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE-S--ALLLLDREAKV-ERYIEEDQT 402 (540)
Q Consensus 330 ~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~--~i~~~d~~~~~-~~~~~~~~~ 402 (540)
++.|+. .+.++ .|++||+.++......... .......|+|||+.++..+.. + .|+++|..+.. .........
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 997764 44444 5999999877665554332 234567899999998876543 3 58888887665 333335566
Q ss_pred eeEEEEcCCCCEEEEEecCC---eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC---cEEEEECC
Q 009188 403 ITSFSLSRDNKFLLVNLLNQ---EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS---QVYIWHRA 476 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg---~i~iwd~~ 476 (540)
.....|+|+|++++.++.++ .|.+||+.+.. ...+...... ....++|++++|+..+.++ .+++.+.
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~----~~p~~spdg~~l~~~~~~~~~~~l~~~~~- 396 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG--ERVLTDTGLD----ESPSFAPNGRMILYATTRGGRGVLGLVST- 396 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC--eEEccCCCCC----CCceECCCCCEEEEEEeCCCcEEEEEEEC-
Confidence 77889999999999988776 78889987642 2222221111 1223488998888777654 3555553
Q ss_pred CCceeEeecCCCCCeEEEEeC
Q 009188 477 SCDLIGALPGHSGAVNCVSWN 497 (540)
Q Consensus 477 ~~~~~~~~~~h~~~v~~l~~~ 497 (540)
++.....+..+.+.+..++|+
T Consensus 397 ~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 397 DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CCceeeECCCCCCCcCCCCCC
Confidence 455555555455556555553
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4e-12 Score=122.21 Aligned_cols=263 Identities=16% Similarity=0.231 Sum_probs=195.5
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCc------------eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG------------VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
.....|++|+....|+|+|+.||.+++..+.+... ...-.++.||++.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 34678999999999999999999999998764321 223356789999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEee--cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEE
Q 009188 299 AVRRWDVSSGNCLHVYE--KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQII 376 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 376 (540)
.|.||-+-.|.-...+. ..++.|.+++|+.||..++....||.|.+=.+++..+-...-. ......+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-g~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-GQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc-hheccceeecccHHHHH
Confidence 99999998876443332 3456799999999999999999999998888776554322111 12455788999999999
Q ss_pred EEecCCeEEEEECCCce---------E----EEeecCCceeEEEEc--------CCCCEEEEEecCCeEEEEEecCCcee
Q 009188 377 TMCKESALLLLDREAKV---------E----RYIEEDQTITSFSLS--------RDNKFLLVNLLNQEIHLWNIEGEVKL 435 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~---------~----~~~~~~~~i~~~~~s--------~~~~~l~~~~~dg~i~i~d~~~~~~~ 435 (540)
.+-.+|.+.++|....- . .+......|..+.|. |+...++++..+|.+.+..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 99999999999976632 0 111123346666663 47789999999999998876655444
Q ss_pred eeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC---------cEEEEECCCCceeEeecCCCCCeEEEEeCCCC
Q 009188 436 VAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS---------QVYIWHRASCDLIGALPGHSGAVNCVSWNPAN 500 (540)
Q Consensus 436 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 500 (540)
+-.-.+. .+.-..|+++|.+++.++.+. .|.+|. .-|..+.+++.....|++++|-..|
T Consensus 253 vv~dtgm-----~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 253 VVVDTGM-----KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred eEEeccc-----EeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCc
Confidence 4333221 233345589999999988653 455554 4578888888888899999997655
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2e-11 Score=120.99 Aligned_cols=232 Identities=15% Similarity=0.139 Sum_probs=150.3
Q ss_pred cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC-C--cEEEEECCCCeEEEEeecCCCcEEEEEEecCC
Q 009188 254 SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE-E--AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR 330 (540)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (540)
.+.++|.+... ...+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ...........|+|||
T Consensus 199 ~l~i~d~dG~~----~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYN----EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCC----ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCC
Confidence 45566654321 12345567788999999999999887543 2 588999988875332 2223334568999999
Q ss_pred CEEEE-EeCCCc--EEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec-CC--eEEEEECCCceEEEe-ecCCce
Q 009188 331 KWIFS-GANDKS--ICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK-ES--ALLLLDREAKVERYI-EEDQTI 403 (540)
Q Consensus 331 ~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~-~~~~~i 403 (540)
+.|+. .+.+|. |+++|+.++......... ......+|+|||+.++..+. ++ .|+++|..++..... ......
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 98875 455664 888898887766554432 35567899999998877653 33 577778776553322 233334
Q ss_pred eEEEEcCCCCEEEEEecC-C--eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-C--cEEEEECCC
Q 009188 404 TSFSLSRDNKFLLVNLLN-Q--EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED-S--QVYIWHRAS 477 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-g--~i~iwd~~~ 477 (540)
...+|+|+|++++..+.+ + .|.++|+.++. . ..+...... . ...++|+|+.|+..+.+ | .+++++. +
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-~-~~lt~~~~d---~-~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-M-QVLTSTRLD---E-SPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCC-e-EEccCCCCC---C-CceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 567999999998876653 3 45566776652 2 222221111 1 11348899887765543 3 3777786 5
Q ss_pred CceeEeecCCCCCeEEEEeCC
Q 009188 478 CDLIGALPGHSGAVNCVSWNP 498 (540)
Q Consensus 478 ~~~~~~~~~h~~~v~~l~~~~ 498 (540)
|.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 666677776777788889987
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.9e-11 Score=120.33 Aligned_cols=233 Identities=13% Similarity=0.106 Sum_probs=152.0
Q ss_pred cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEecCC
Q 009188 254 SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE---EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR 330 (540)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (540)
.|.++|.+.. . ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.... ......+....|+|||
T Consensus 180 ~l~~~d~~g~-~---~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGA-R---AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCC-C---ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCC
Confidence 3666666532 1 23344667789999999999999887644 3599999988875443 3333445578999999
Q ss_pred CEEEE-EeCCC--cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec-C--CeEEEEECCCceEEE-eecCCce
Q 009188 331 KWIFS-GANDK--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK-E--SALLLLDREAKVERY-IEEDQTI 403 (540)
Q Consensus 331 ~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~-~~~~~~i 403 (540)
+.|+. .+.+| .|++||+.++......... .......|+|||+.++..+. + ..|++++..++.... .......
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 98874 44455 6888899887766544332 34566789999998876653 3 357778877655322 2222334
Q ss_pred eEEEEcCCCCEEEEEecC-C--eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC---CcEEEEECCC
Q 009188 404 TSFSLSRDNKFLLVNLLN-Q--EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED---SQVYIWHRAS 477 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d---g~i~iwd~~~ 477 (540)
....|+|+|+.++....+ + .|.+||+.++.. ..+...... . ...++|+|+.++..+.+ ..|++++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~~~~~---~-~p~~spdg~~i~~~~~~~g~~~l~~~~~~- 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTDTSLD---E-SPSVAPNGTMLIYATRQQGRGVLMLVSIN- 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccCCCCC---C-CceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 567899999999887653 2 578889876522 222211111 1 11348899988776654 357777874
Q ss_pred CceeEeecCCCCCeEEEEeCCC
Q 009188 478 CDLIGALPGHSGAVNCVSWNPA 499 (540)
Q Consensus 478 ~~~~~~~~~h~~~v~~l~~~~~ 499 (540)
+.....+..+.+.+...+|+|-
T Consensus 407 g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCceEECcCCCCCcCCCccCCC
Confidence 4444556556677888888873
No 247
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=6.1e-14 Score=137.45 Aligned_cols=296 Identities=13% Similarity=0.183 Sum_probs=194.3
Q ss_pred hHHHHHHHHHHHHHHhhcccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEE
Q 009188 179 RRLEHLVEQALVLQREACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIW 258 (540)
Q Consensus 179 ~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iw 258 (540)
..|..++.+.++.|+..|..+......+++|..|.|+......+....+.+-.+. .-.+++-+ -+-.+..|... ||
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~--rel~~~y~-gV~g~~~dr~~-IF 1088 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGT--RELQSFYS-GVHGNRRDRQF-IF 1088 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccc--hhhcCccc-ccccCcccchh-hH
Confidence 3589999999999999999999999999999999996422211111111111000 00111111 01112222211 22
Q ss_pred EeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC
Q 009188 259 EVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN 338 (540)
Q Consensus 259 d~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 338 (540)
..++..+++..|+...+|++|+.+.++|+.|+..|.|+++++.+|........|.++|+.+.-+.+|..+++.+.
T Consensus 1089 -----SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1089 -----SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred -----hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecc
Confidence 112344567788999999999999999999999999999999999999999999999999999989988776655
Q ss_pred CC--cEEEEecCC-ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEE
Q 009188 339 DK--SICMWELGG-KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFL 415 (540)
Q Consensus 339 dg--~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l 415 (540)
-. -..+|++.. +.. .|. | ..-.++.|+.....-
T Consensus 1164 ~S~PlsaLW~~~s~~~~-----~Hs-------f--------------------------------~ed~~vkFsn~~q~r 1199 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGP-----RHS-------F--------------------------------DEDKAVKFSNSLQFR 1199 (1516)
T ss_pred ccCchHHHhccccccCc-----ccc-------c--------------------------------cccceeehhhhHHHH
Confidence 43 467888753 111 010 0 011234455544445
Q ss_pred EEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEE
Q 009188 416 LVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVS 495 (540)
Q Consensus 416 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 495 (540)
+.|+......+||+.+...+..-+.+.....+.-.+..++|+..+++- || .+||++..+.++.|...+..+.. .
T Consensus 1200 ~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~~G-~ 1273 (1516)
T KOG1832|consen 1200 ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYGGG-G 1273 (1516)
T ss_pred HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecccc-c
Confidence 556666778899998885554446555555555566667898888773 44 58999988888777655433332 3
Q ss_pred eCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCC--ceEeccCC
Q 009188 496 WNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSN--GVHYCNGG 539 (540)
Q Consensus 496 ~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~--~v~~c~~g 539 (540)
|+|.|. -++.-+. |||+++.++.+....-+ .|.|-..|
T Consensus 1274 FHP~g~-eVIINSE-----IwD~RTF~lLh~VP~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1274 FHPSGN-EVIINSE-----IWDMRTFKLLHSVPSLDQCAVTFNSTG 1313 (1516)
T ss_pred ccCCCc-eEEeech-----hhhhHHHHHHhcCccccceEEEeccCc
Confidence 999996 5555554 99999998887643322 34555444
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=1.7e-11 Score=121.99 Aligned_cols=201 Identities=15% Similarity=0.162 Sum_probs=141.2
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCC---CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCC-
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSND---RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEE- 298 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg- 298 (540)
.+.+..+...+.+.+|+|||++|+.++.+ ..|++||+..+.. . .+..+.+.+.+++|+|||+.|+.. +.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-E---KVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-E---EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 45555677789999999999999987654 4799999875422 2 233455667789999999877654 4444
Q ss_pred -cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-C--cEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 299 -AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND-K--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 299 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
.|.+||+.++.... +..+........|+||++.|+.++.. + .|+++|+.++........ ........|+|+|+.
T Consensus 258 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccCeEECCCCCE
Confidence 58999998876543 33444445567899999988766543 3 588888877665444332 235677899999999
Q ss_pred EEEEecCC---eEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCC---eEEEEEec
Q 009188 375 IITMCKES---ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQ---EIHLWNIE 430 (540)
Q Consensus 375 l~~~~~d~---~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~ 430 (540)
++.++.++ .|.++|+.+................|+|+++.|+..+.++ .+++.+..
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 99888776 7899998876544444334455678999999888877654 34444433
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=7.9e-11 Score=109.34 Aligned_cols=281 Identities=17% Similarity=0.278 Sum_probs=182.6
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC--------
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE-------- 298 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-------- 298 (540)
+....-++..++|||.|.+|++....| |.+|.-.... .+. .+ -...|..+.|+|.+++|.+-+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~--~l~-~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA--KLV-RF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchh--hee-ee--ecCCceecccCcccceeeeeccCCccChhhcc
Confidence 333566889999999999999987765 9999876443 222 22 234589999999999999976543
Q ss_pred -------cEEEEECCCCeEEEEeecCC---------------------------------------------CcEEEEEE
Q 009188 299 -------AVRRWDVSSGNCLHVYEKAG---------------------------------------------LGLVSCGW 326 (540)
Q Consensus 299 -------~i~iwd~~~~~~~~~~~~~~---------------------------------------------~~v~~~~~ 326 (540)
.+.+||+.+|..+..+.... ..+....|
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 49999999988776554322 23444455
Q ss_pred ecCC--CEEEE-----EeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-----------cCCeEEEEE
Q 009188 327 HPDR--KWIFS-----GANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-----------KESALLLLD 388 (540)
Q Consensus 327 ~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----------~d~~i~~~d 388 (540)
+|.+ ..|+. ++..+.+++|.+..+............-..+.|.+.|+++++-. ....+++++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 5532 22332 33445666666643333222222211223567788888776432 235678888
Q ss_pred CCCceEEEe-ecCCceeEEEEcCCCCEEEEEe--cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee
Q 009188 389 REAKVERYI-EEDQTITSFSLSRDNKFLLVNL--LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS 465 (540)
Q Consensus 389 ~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s 465 (540)
+........ ...++|..++|.|.++.+++.+ .+..+.++|++++ +...+...... ..+++|.+++++.++
T Consensus 262 ~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rN-----T~~fsp~~r~il~ag 334 (561)
T COG5354 262 ITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRN-----TIFFSPHERYILFAG 334 (561)
T ss_pred ecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccc-----cccccCcccEEEEec
Confidence 876553333 5689999999999988776654 6788999999875 33332222221 223489999999877
Q ss_pred CC---CcEEEEECCCCceeE-eecCCCCCeEEEEeCCCCCCEEEEEe------CCCcEEEecCCCCCc
Q 009188 466 ED---SQVYIWHRASCDLIG-ALPGHSGAVNCVSWNPANPHMLASAS------DDRTIRIWGLKDLNV 523 (540)
Q Consensus 466 ~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~------~Dg~i~iw~~~~~~~ 523 (540)
-| |.|-+||......+. .+.+. ...-+.|+|++. ++.+.. .|..|+||++.....
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~q-F~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQ-FYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecC--CceEeeccCCce-EEEecCCCcccccCcceEEEEecCchh
Confidence 65 689999987655544 55543 344567999997 554442 378899999986544
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=1e-09 Score=102.47 Aligned_cols=265 Identities=9% Similarity=0.047 Sum_probs=163.9
Q ss_pred CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC----------CCcEEEEECCCCeEEEEeecCC----
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV----------EEAVRRWDVSSGNCLHVYEKAG---- 318 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~---- 318 (540)
++|.+.|..+. +.+.++..-..+- .+ ++||++.|+.+.. +..|.+||+.+++.+..+....
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 78999998765 4555554433333 24 9999998887765 6789999999999998886432
Q ss_pred ---CcEEEEEEecCCCEEEEEe-C-CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC--
Q 009188 319 ---LGLVSCGWHPDRKWIFSGA-N-DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA-- 391 (540)
Q Consensus 319 ---~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~-- 391 (540)
.....++++|||+++++.. . +..|.+.|+.+++......... ...-...+.+... +.+.||.........
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCC
Confidence 2234788999999999776 3 6789999998877665443321 1111112111111 223344333322211
Q ss_pred ce----EEEeec-CCce-eEEEEcC-CCCEEEEEecCCeEEEEEecCCc----eeeeEeeCCcC----CeeEEEeeeccC
Q 009188 392 KV----ERYIEE-DQTI-TSFSLSR-DNKFLLVNLLNQEIHLWNIEGEV----KLVAKYKGHKR----SRFVIRSCFGGL 456 (540)
Q Consensus 392 ~~----~~~~~~-~~~i-~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~----~~~~i~~~~~~~ 456 (540)
+. ...+.. ..++ ..-.+.+ +|+++.+... |.|++.|+.+.. .....+..... ..........++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 11 111111 0000 0004455 8888888776 999999965431 12222211100 000111133377
Q ss_pred CCcEEEEee----------CCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCC-CEEEEEeCCCcEEEecCCCCCccc
Q 009188 457 EQAFIASGS----------EDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANP-HMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 457 ~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
+++.++... ..+.|.++|..+++.+..+.. ...+..++++||+. .++++...++.|.+.|..+++..+
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 877777642 224799999999999998873 46899999999997 555566678999999999998887
Q ss_pred cc
Q 009188 526 KD 527 (540)
Q Consensus 526 ~~ 527 (540)
..
T Consensus 337 ~i 338 (352)
T TIGR02658 337 SV 338 (352)
T ss_pred ee
Confidence 75
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=3.2e-11 Score=121.18 Aligned_cols=150 Identities=21% Similarity=0.308 Sum_probs=132.3
Q ss_pred EEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE-Eee
Q 009188 237 LQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH-VYE 315 (540)
Q Consensus 237 ~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~ 315 (540)
+.++++.-++++|+.-+.|.+|+...... ...+.+|.+.|.++.|+.||.+++++|.|.++++|++++.+... ..-
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f 215 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF 215 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCC---cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc
Confidence 34566777999999999999999874322 22678999999999999999999999999999999999988766 556
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 316 KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 316 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
+|...++.++|+|+ .+++++.|.+.++|+.+..++..+..+....+..++..++....++++.|+.+++|+..+
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 89999999999998 899999999999999988888877777777899999999999999999999999999755
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.8e-11 Score=118.78 Aligned_cols=202 Identities=14% Similarity=0.158 Sum_probs=137.5
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCC---CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEE-eeCCC-
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSND---RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLT-CGVEE- 298 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg- 298 (540)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+|++..+.. . .+....+.+....|+|||+.|+. .+.+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~---~l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-E---QITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-E---EccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 45555677889999999999999877644 3588888875422 2 22333344567899999998874 44454
Q ss_pred -cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC-CC--cEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 299 -AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DK--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 299 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
.|.+||+.+++... +..+........|+|||+.++..+. +| .|+++++.++......... .......|+|+|+.
T Consensus 267 ~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~ 344 (430)
T PRK00178 267 PEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKT 344 (430)
T ss_pred ceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCE
Confidence 58888998877543 4445555667889999998876654 33 5788888776655443222 23345789999999
Q ss_pred EEEEecCC---eEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecC---CeEEEEEecC
Q 009188 375 IITMCKES---ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN---QEIHLWNIEG 431 (540)
Q Consensus 375 l~~~~~d~---~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~ 431 (540)
++.....+ .|.++|+.++...............|+|+|+.++..+.+ ..+.++++.+
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 98776532 588899887664444433334466899999998877654 2466666654
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.3e-09 Score=97.70 Aligned_cols=274 Identities=11% Similarity=0.163 Sum_probs=179.9
Q ss_pred CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---CcEEEEECCC--CeEEE--EeecCCCcEEEE
Q 009188 252 DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE---EAVRRWDVSS--GNCLH--VYEKAGLGLVSC 324 (540)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~--~~~~~--~~~~~~~~v~~~ 324 (540)
+.-|++|++++.........+..+.+.++-|+|+|+++.|.++..+ |.|..|.+.. |+... .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999998544333333445677889999999999999988654 6677777654 55432 222334455889
Q ss_pred EEecCCCEEEEEeCC-CcEEEEecCC-ceEEEe---ecc---------ccceEEEEEEccCCCEEEEEe-cCCeEEEEEC
Q 009188 325 GWHPDRKWIFSGAND-KSICMWELGG-KELECW---KGQ---------RTLKISDLEVTSDGKQIITMC-KESALLLLDR 389 (540)
Q Consensus 325 ~~~~~~~~l~~~~~d-g~i~iwd~~~-~~~~~~---~~~---------~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~ 389 (540)
++++++++++++... |.|.++-++. +.+... ..+ ....+....++|+++++++.+ ....|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 999999999988754 6899998853 322211 111 112278889999999998876 4467899998
Q ss_pred CCce-----EEEeecCCceeEEEEcCCCCEEEEEec-CCeEEEEEecCCceeeeEee------CCcCCeeEEEeeeccCC
Q 009188 390 EAKV-----ERYIEEDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEGEVKLVAKYK------GHKRSRFVIRSCFGGLE 457 (540)
Q Consensus 390 ~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~ 457 (540)
..+. ..........+.|.|+|++++..+.+. +++|.+|........+..+. ..-...........+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 8655 233356778899999999999877665 89999999876422222221 11111112233344899
Q ss_pred CcEEEEeeC-CCcEEEEECCC--Cce--eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC--CCCCccc
Q 009188 458 QAFIASGSE-DSQVYIWHRAS--CDL--IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL--KDLNVKR 525 (540)
Q Consensus 458 ~~~l~s~s~-dg~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~--~~~~~~~ 525 (540)
|++|+++.. ...|.+|.+.. +++ +.....+......+.++|.+..++++.-++.+|.+|.. ++|++..
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 999988754 23677776543 332 22333455567899999999744444445567888866 4565543
No 254
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=1.3e-09 Score=115.86 Aligned_cols=287 Identities=14% Similarity=0.173 Sum_probs=187.1
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
..+.|.++.|-++...++.+..+|.|.+...+.+...........-..+|.+++||||+..|+.++.++++.+.+- +.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cce
Confidence 4578999999999999999999999999933221111222333345678999999999999999999998877642 111
Q ss_pred EEE------------------------Eeec------------------------CCCcEEEEEEecCCCEEEEEeC---
Q 009188 310 CLH------------------------VYEK------------------------AGLGLVSCGWHPDRKWIFSGAN--- 338 (540)
Q Consensus 310 ~~~------------------------~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~--- 338 (540)
.+. .|.+ ....-..++|-.||.+||+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 111 1100 2224467889999999998765
Q ss_pred C---CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec---CCeEEEEECCCceEEEe-----ecCCceeEEE
Q 009188 339 D---KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK---ESALLLLDREAKVERYI-----EEDQTITSFS 407 (540)
Q Consensus 339 d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~-----~~~~~i~~~~ 407 (540)
. ..+++|+-+ +.+......-.+--.+++|.|.|+.+++... ...|.+|..++-....+ .....+..+.
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 3 469999966 5555555544445568999999999998775 45688888777552221 3456889999
Q ss_pred EcCCCCEEEEEecCCeEEEEEecCCceee-eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC----CCCc---
Q 009188 408 LSRDNKFLLVNLLNQEIHLWNIEGEVKLV-AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR----ASCD--- 479 (540)
Q Consensus 408 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~----~~~~--- 479 (540)
|++++..|++...+. |.+|-..+..-.. +.+....... ...+.|...+...|...+.+|.+..++. ..+.
T Consensus 312 Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~-~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 312 WNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES-VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred ECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC-CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 999999999987555 9999987652111 1122111110 1112232334445666665565554432 1110
Q ss_pred -----eeEeec-----------------------CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 480 -----LIGALP-----------------------GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 480 -----~~~~~~-----------------------~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
.+..+. ....+|.+++|++++. .+++...||.|.+|.....
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCC
Confidence 011110 1346899999999886 6999999999999986543
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=9.8e-11 Score=116.08 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=130.9
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeC-CC--cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCc-
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSN-DR--SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEA- 299 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~- 299 (540)
+.+..+...+.+..|||||+.|+..+. ++ .|.+||+..+. ...+..+ .+.....+|+|||+.|+.. +.+|.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSF---PGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCC---CCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 445556678889999999999987654 33 47777776542 2222222 2334568999999988754 55664
Q ss_pred -EEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC-CC--cEEEEecCCceEEEeeccccceEEEEEEccCCCEE
Q 009188 300 -VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DK--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 300 -i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
|.++|+.+++.. .+..+.......+|+|||+.++..+. ++ .|+++|+.+++........ ......+|+|||+.+
T Consensus 287 ~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l 364 (448)
T PRK04792 287 EIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEE
Confidence 888898887654 34445555677899999998876654 33 5777788776655443221 123456899999998
Q ss_pred EEEecC-C--eEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCC---eEEEEEecC
Q 009188 376 ITMCKE-S--ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQ---EIHLWNIEG 431 (540)
Q Consensus 376 ~~~~~d-~--~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~ 431 (540)
+..+.+ + .|.++|+.++...............|+|+|+.++..+.++ .+++++..+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 876653 3 4666788776644333222233558999999887766533 366666644
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=4.4e-09 Score=94.38 Aligned_cols=271 Identities=13% Similarity=0.161 Sum_probs=179.0
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeC---CCcEEEEEeecC-CceEEEEEecCCCCCeEEEEECcCCCeEEEeeC-CCcEE
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSN---DRSAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV-EEAVR 301 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~ 301 (540)
+-.+.+.++-++|+|+++.|.++.. +|.|.-|.++.. +....+........+...++++++|++++++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3346778899999999999998754 478999988854 444444444444455588999999999999975 47899
Q ss_pred EEECCC-CeEEEE--eecCCCc----------EEEEEEecCCCEEEEEeCC-CcEEEEecCCceEEEee---ccccceEE
Q 009188 302 RWDVSS-GNCLHV--YEKAGLG----------LVSCGWHPDRKWIFSGAND-KSICMWELGGKELECWK---GQRTLKIS 364 (540)
Q Consensus 302 iwd~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~---~~~~~~v~ 364 (540)
++-+.. |..... ...|.+. +....+.|+++++++.+-. ..|.+|++..+.+.... .......+
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 998865 433221 1123333 7788899999999887642 26999999765554322 23445688
Q ss_pred EEEEccCCCEEEEEe-cCCeEEEEECCCc--eEEE----------eecCCceeEEEEcCCCCEEEEEec-CCeEEEEEec
Q 009188 365 DLEVTSDGKQIITMC-KESALLLLDREAK--VERY----------IEEDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIE 430 (540)
Q Consensus 365 ~i~~~~~~~~l~~~~-~d~~i~~~d~~~~--~~~~----------~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~ 430 (540)
.|.|+|++++..+.+ -+++|.+|..... .... +........+.++++|++|.++.. ...|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999999999988776 5788999988773 2111 123456778999999999998865 3468888876
Q ss_pred CCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC-cEEEEEC--CCCceeEeec-CCCCCeEEEEeC
Q 009188 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS-QVYIWHR--ASCDLIGALP-GHSGAVNCVSWN 497 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg-~i~iwd~--~~~~~~~~~~-~h~~~v~~l~~~ 497 (540)
.....+............-+...+++.+++|+++..++ .|.+|.+ .+|++-.... .......||.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 54333332221111111122233378899988887765 6777754 4565543332 233444555553
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=3e-10 Score=107.66 Aligned_cols=187 Identities=19% Similarity=0.250 Sum_probs=149.7
Q ss_pred ecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec---CCCCCeEEEEEC------c--------------CCCeEEEeeC
Q 009188 240 SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS---GHQKPVSCVSWS------S--------------DDQQLLTCGV 296 (540)
Q Consensus 240 sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~s------~--------------~~~~l~s~~~ 296 (540)
.|.+.|+|....||.++||+...+ +....+. .-.+..++..|. | +...++-|..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~---~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKN---QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCc---eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 345679999999999999998866 2333332 223445555552 2 3456778888
Q ss_pred CCcEEEEECCCCeEEEEee--cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 297 EEAVRRWDVSSGNCLHVYE--KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
.|.|.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.......+........+.+++++|||..
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE
Confidence 9999999999999888776 67889999999999899999999999999999998888887777778999999999999
Q ss_pred EEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCC-----CCEEEEEe-cCCeEEEEEecC
Q 009188 375 IITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRD-----NKFLLVNL-LNQEIHLWNIEG 431 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~-----~~~l~~~~-~dg~i~i~d~~~ 431 (540)
+++++ +.|.+||+++++ ..+.+|.++|++++|.-+ |.+++++. .+..+.+|-+..
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98876 589999999987 777889999999999776 67766654 455677777654
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=2.3e-09 Score=98.83 Aligned_cols=171 Identities=15% Similarity=0.110 Sum_probs=137.3
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC-cEEEEECCCCeEEEEeecCCCc
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE-AVRRWDVSSGNCLHVYEKAGLG 320 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~ 320 (540)
+|.+++..|. |...|.+...+ . . .-.+|.+.|....+..+++-++.|..|| .+-|+|..+++.. .+...-+.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~--~-~--iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~ 403 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDG--Y-S--IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGN 403 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCC--e-e--EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccc
Confidence 6888888886 66777765433 1 1 1236888899999999999999999999 7999999887754 44456678
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCC----eEEEEECCCce-EE
Q 009188 321 LVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES----ALLLLDREAKV-ER 395 (540)
Q Consensus 321 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~i~~~d~~~~~-~~ 395 (540)
|.++..+++|++++++.....+.+.|++++...........-|+.+.|+|++++++-+-.+| .|+++|..+.+ ..
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 99999999999999999999999999999998888887778899999999999999887766 58999999866 44
Q ss_pred EeecCCceeEEEEcCCCCEEEEEe
Q 009188 396 YIEEDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 396 ~~~~~~~i~~~~~s~~~~~l~~~~ 419 (540)
.......=.+-+|.|++++|..-+
T Consensus 484 vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 484 VTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ecCCcccccCcccCCCCcEEEEEe
Confidence 444445556678999998876644
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.37 E-value=2.8e-11 Score=106.77 Aligned_cols=253 Identities=15% Similarity=0.232 Sum_probs=183.0
Q ss_pred eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC-CCeEEEEe-ecCCCcEEEEEEecCCCEEEEEeCCCcEE
Q 009188 266 VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS-SGNCLHVY-EKAGLGLVSCGWHPDRKWIFSGANDKSIC 343 (540)
Q Consensus 266 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 343 (540)
+.+...++||.+.|+....-|...-+++.+.|.+++||--. .++.-..+ .....+++++.+.++...|++|-.+|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 34566788999999999999999999999999999999543 34433222 23356889999999999999999999999
Q ss_pred EEecCC----ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEE
Q 009188 344 MWELGG----KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVN 418 (540)
Q Consensus 344 iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~ 418 (540)
-+.+.. .........|...+..+-|+-...++++.+.|..+..--.+... ..........+.+.+.-. +..+|
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec
Confidence 987742 23333444566789999999989999999988777654444332 110001111111111111 56666
Q ss_pred ecCCeEEEEEecC-CceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce-eEeecCCCCCeEEEEe
Q 009188 419 LLNQEIHLWNIEG-EVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL-IGALPGHSGAVNCVSW 496 (540)
Q Consensus 419 ~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~ 496 (540)
...|.|....+.. ...++.++.+|..... +..|.+....+.+|..|..+.+||+...+- ...+.+|...|..+..
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~---~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVT---CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceE---EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 6777776665532 2367788888888744 445588889999999999999999876554 4678889999999988
Q ss_pred CCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 497 NPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 497 ~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
.+.- ..++|++.||.|-+|+++.....
T Consensus 249 ~~~t-~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 249 AQHT-RQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hhhh-eeeeeccCCCeEEEEeccceeec
Confidence 7766 48999999999999999876544
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=7.9e-10 Score=108.73 Aligned_cols=236 Identities=9% Similarity=0.061 Sum_probs=143.0
Q ss_pred cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEE---EeeCCC--cEEEEECCCCeEEEEeecCCCcEEEEEEec
Q 009188 254 SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLL---TCGVEE--AVRRWDVSSGNCLHVYEKAGLGLVSCGWHP 328 (540)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~---s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 328 (540)
.|.+.|.+... . ..+......+.+-.|+|||+.++ +...+| .|.+.++.+|+..... ...+......|+|
T Consensus 166 ~l~~~d~dG~~-~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP 240 (428)
T PRK01029 166 ELWSVDYDGQN-L---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP 240 (428)
T ss_pred eEEEEcCCCCC-c---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC
Confidence 45555554321 1 22444556677889999997532 333333 5888898887654333 3344455689999
Q ss_pred CCCEEEEEeC-CC----cEEEEecCC---ceEEEeeccccceEEEEEEccCCCEEEEEe-cCCe--EEEEECCC--ce-E
Q 009188 329 DRKWIFSGAN-DK----SICMWELGG---KELECWKGQRTLKISDLEVTSDGKQIITMC-KESA--LLLLDREA--KV-E 394 (540)
Q Consensus 329 ~~~~l~~~~~-dg----~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~--i~~~d~~~--~~-~ 394 (540)
||+.|+..+. +| .+..|++.+ +................+|+|||+.|+..+ .+|. +++++... .. .
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 9998886653 23 344467653 233333333222345679999999888766 4564 44445432 22 3
Q ss_pred EEeecCCceeEEEEcCCCCEEEEEecC---CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC---CC
Q 009188 395 RYIEEDQTITSFSLSRDNKFLLVNLLN---QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE---DS 468 (540)
Q Consensus 395 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~---dg 468 (540)
........+....|+|||+.|+..+.+ ..|.+||+.++. . ..+...... .....|+|+|+.|+..+. ..
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~Lt~~~~~---~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR-D-YQLTTSPEN---KESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-e-EEccCCCCC---ccceEECCCCCEEEEEECCCCCc
Confidence 333344567789999999988876543 368999998762 2 222222111 122344899988775433 35
Q ss_pred cEEEEECCCCceeEeecCCCCCeEEEEeCCCC
Q 009188 469 QVYIWHRASCDLIGALPGHSGAVNCVSWNPAN 500 (540)
Q Consensus 469 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 500 (540)
.|+++|+.+++...... ..+.+...+|+|..
T Consensus 396 ~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 78999998877544433 45667788898854
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=7.8e-11 Score=104.01 Aligned_cols=245 Identities=15% Similarity=0.208 Sum_probs=169.3
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe-----EEEEeecCC------------CcEEEEEEecCCC--EEEEE
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN-----CLHVYEKAG------------LGLVSCGWHPDRK--WIFSG 336 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~ 336 (540)
.+-|.++.|...|.+|++|..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999998643221 223333332 3677889988554 67788
Q ss_pred eCCCcEEEEecCCceEE------------------------------------EeeccccceEEEEEEccCCCEEEEEec
Q 009188 337 ANDKSICMWELGGKELE------------------------------------CWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 337 ~~dg~i~iwd~~~~~~~------------------------------------~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
+.|.+|++|.+..+... .+...|...|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 89999999988432110 1123566678999999999988875 5
Q ss_pred CCeEEEEECCCceE--E---Eee-----cCCceeEEEEcCC-CCEEEEEecCCeEEEEEecCCcee---eeEeeCCc---
Q 009188 381 ESALLLLDREAKVE--R---YIE-----EDQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEGEVKL---VAKYKGHK--- 443 (540)
Q Consensus 381 d~~i~~~d~~~~~~--~---~~~-----~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~--- 443 (540)
|-.|.+|++.-... . ... ...-|++..|+|. .+.++-.+..|+|++.|++...-+ .+.+....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 67889998765331 1 111 2345789999995 478888899999999999843111 11111111
Q ss_pred ------CCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC-CCCceeEeecCCC------------CCe---EEEEeCCCCC
Q 009188 444 ------RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR-ASCDLIGALPGHS------------GAV---NCVSWNPANP 501 (540)
Q Consensus 444 ------~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~h~------------~~v---~~l~~~~~~~ 501 (540)
..+..+.-..++.+|+|+++-+. -+|++||+ ...+++.+++-|. ..| ..++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 11223333445889999987654 58999998 4566777776553 223 4678998885
Q ss_pred CEEEEEeCCCcEEEecCCCCCc
Q 009188 502 HMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 502 ~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
.++|||....++++++..|..
T Consensus 343 -~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 343 -YVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred -eEecccccceEEEecCCCCcc
Confidence 999999999999999766543
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=9.4e-10 Score=95.31 Aligned_cols=268 Identities=12% Similarity=0.072 Sum_probs=172.8
Q ss_pred CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc---CCC-eEEEeeCCCcEEEEECCCCeEEEEeecCC------CcE
Q 009188 252 DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS---DDQ-QLLTCGVEEAVRRWDVSSGNCLHVYEKAG------LGL 321 (540)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v 321 (540)
.|.+.+|++..................+..+.|.- +|. .++-+-.+|.|.++..........+.+-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 46788888764432221111122345567777763 444 55666778899999765544333333221 134
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEecCCceEEE--eeccccceEEEEEEccC-CCEEEEEecCCeEEEEECCCce----E
Q 009188 322 VSCGWHPDRKWIFSGANDKSICMWELGGKELEC--WKGQRTLKISDLEVTSD-GKQIITMCKESALLLLDREAKV----E 394 (540)
Q Consensus 322 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~~d~~~~~----~ 394 (540)
.++.|++.+..++++..+|.+.+-+.....+.. ....|..+.....|+.. .+.+.+|+.|+.+..||++.+. .
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 578899999999999999999866665544444 45566667777888754 4678899999999999999433 2
Q ss_pred EEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEE
Q 009188 395 RYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW 473 (540)
Q Consensus 395 ~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iw 473 (540)
....|...|.++.-+| .+.++++|+.|..|++||.++-.+++..-... +.+..+...... .+.+++++-.+| .+|-
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGVWRi~~~p~~-~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGVWRIKHHPEI-FHRLLAACMHNG-AKIL 281 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-cceEEEEecchh-hhHHHHHHHhcC-ceEE
Confidence 2445778888988877 57899999999999999999665665543322 444444433211 123344443333 4555
Q ss_pred ECCCC--c---eeEeecCCCCCeEEEEeCCCCCCEEEEEe-CCCcEE-EecCCCCCc
Q 009188 474 HRASC--D---LIGALPGHSGAVNCVSWNPANPHMLASAS-DDRTIR-IWGLKDLNV 523 (540)
Q Consensus 474 d~~~~--~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~Dg~i~-iw~~~~~~~ 523 (540)
+...+ + .....+.|.+-++.-.|..... +++||+ .|+.++ +|-.-++..
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred Eecccccchheeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccCCc
Confidence 54433 2 3345567888888888866543 788876 577755 887666543
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=129.66 Aligned_cols=221 Identities=16% Similarity=0.261 Sum_probs=166.6
Q ss_pred cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecC-CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA-GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE 351 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 351 (540)
..+-..|.++.=+|...+.+||+.||.|++|....++.+..+... ...|+.+.|+.+|+.+..+..||.+.+|....+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence 345567888998999999999999999999999988887777533 3789999999999999999999999999998544
Q ss_pred EEEeeccccceEEEEEEccCCCEEEEEe---cCCeEEEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEE
Q 009188 352 LECWKGQRTLKISDLEVTSDGKQIITMC---KESALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIH 425 (540)
Q Consensus 352 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 425 (540)
...+.. |.....++.|-. ..+++++ .++.+.+||..-.. .....|.+.++++++.|..+.+++|+.+|.|.
T Consensus 2285 ~~s~qc-hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 YTSWQC-HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred eecccc-CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 444433 333566666654 4455544 56789999965433 33377999999999999999999999999999
Q ss_pred EEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC-C--CCC--e--EEEEeCC
Q 009188 426 LWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-H--SGA--V--NCVSWNP 498 (540)
Q Consensus 426 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h--~~~--v--~~l~~~~ 498 (540)
+||++.. +....+.. +. ...++++|+..|.|+||++.....+++++. | .+- . ..+...+
T Consensus 2362 l~D~rqr-ql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~ 2427 (2439)
T KOG1064|consen 2362 LFDIRQR-QLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQ 2427 (2439)
T ss_pred EeehHHH-HHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeecc
Confidence 9999865 44444433 12 456899999999999999998888877763 2 111 1 2222333
Q ss_pred CCCCEEEEEeCCCc
Q 009188 499 ANPHMLASASDDRT 512 (540)
Q Consensus 499 ~~~~~l~s~~~Dg~ 512 (540)
.+ .|.+||.||+
T Consensus 2428 ~n--rifsCgad~~ 2439 (2439)
T KOG1064|consen 2428 CN--RIFSCGADGT 2439 (2439)
T ss_pred Cc--eEEEecCCCC
Confidence 22 5778888874
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=7.9e-11 Score=118.45 Aligned_cols=277 Identities=14% Similarity=0.175 Sum_probs=182.3
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceE---EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT---LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS 307 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 307 (540)
-+++++.++-. +||.+|.. -.|.+||+..+.-.. .......|...=.-- -.+.+++++..-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhh
Confidence 34455555543 56776654 469999987552211 111222331000000 1234555555444333322211
Q ss_pred CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccc----eEEEEEEccCCCEEEEEecCCe
Q 009188 308 GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTL----KISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
+.. ......+....+..+...++.++.+..+.+||.....+......... ...-+..+++.-++++|+.-+.
T Consensus 81 -~~~---~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 81 -QII---ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred -hhh---hhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 111 11223344455555777899999999999999976555443332221 1222344666778899999999
Q ss_pred EEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEE
Q 009188 384 LLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI 461 (540)
Q Consensus 384 i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 461 (540)
|.+|+..... ....+|++.|.++.++.+|+++++.+.|..+++|++.+.......--+|...+.. +++ .++ .+
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~--~~~-~~n--~i 231 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA--CCF-LPN--RI 231 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE--EEe-ccc--ee
Confidence 9999987433 5678999999999999999999999999999999999875554455667766544 444 444 89
Q ss_pred EEeeCCCcEEEEECCCCceeEeecCCC-CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 462 ASGSEDSQVYIWHRASCDLIGALPGHS-GAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 462 ~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
+++++|-+.++|+.. +..+..+.+|. ..|..++..++.. +++|++.||.+++|++......
T Consensus 232 ~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred EEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccccc
Confidence 999999999999654 55555788885 5799999998775 9999999999999999765443
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.7e-10 Score=109.72 Aligned_cols=203 Identities=12% Similarity=0.039 Sum_probs=127.0
Q ss_pred EecccCcCcEEEEEEecCCCeE---EEEeCCCc--EEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC-CC
Q 009188 225 QILQGHTDEVWFLQFSHNGKYL---ASSSNDRS--AIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV-EE 298 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l---~tg~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg 298 (540)
+.+......+.+-+|||||+.+ ++...+|. |.+.++..+. ... +....+.....+|+|||+.|+..+. +|
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~~---lt~~~g~~~~p~wSPDG~~Laf~s~~~g 253 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GKK---ILALQGNQLMPTFSPRKKLLAFISDRYG 253 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-ceE---eecCCCCccceEECCCCCEEEEEECCCC
Confidence 3444456677888999999752 24444444 5555555332 222 2233444566899999998887653 22
Q ss_pred ----cEEEEECCCC---eEEEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEE--ecCC--ceEEEeeccccceEEEE
Q 009188 299 ----AVRRWDVSSG---NCLHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMW--ELGG--KELECWKGQRTLKISDL 366 (540)
Q Consensus 299 ----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~--~~~~~~~~~~~~~v~~i 366 (540)
.+.+|++.++ +...............+|+|||+.|+..+ .+|...+| ++.. +....... ....+...
T Consensus 254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p 332 (428)
T PRK01029 254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCP 332 (428)
T ss_pred CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccce
Confidence 3444777653 33333323323446789999999887665 45654444 5432 32332322 22356788
Q ss_pred EEccCCCEEEEEecC---CeEEEEECCCceEEEee-cCCceeEEEEcCCCCEEEEEec---CCeEEEEEecCC
Q 009188 367 EVTSDGKQIITMCKE---SALLLLDREAKVERYIE-EDQTITSFSLSRDNKFLLVNLL---NQEIHLWNIEGE 432 (540)
Q Consensus 367 ~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~ 432 (540)
.|+|||+.++....+ ..|.+||..++...... ....+....|+|+|+.|+.... ...|+++|+.++
T Consensus 333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 999999999877643 46899999887644433 3346778999999998876543 346888888765
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.2e-10 Score=108.58 Aligned_cols=207 Identities=11% Similarity=0.149 Sum_probs=150.0
Q ss_pred cCCCeEEEeeCCCcEEEEECCCCeEEEEeecC---CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccce
Q 009188 286 SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA---GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLK 362 (540)
Q Consensus 286 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (540)
|...++|....||.+++|+..+++....|... .+.-++..|. |.+... +..+.... .
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s-------------~~k~~~~~--~ 62 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYS-------------PMKWLSLE--K 62 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccc-------------hHHHHhHH--H
Confidence 45678999999999999999999887766432 1222333332 111110 00000000 0
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEECCCceEEE----eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeE
Q 009188 363 ISDLEVTSDGKQIITMCKESALLLLDREAKVERY----IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAK 438 (540)
Q Consensus 363 v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 438 (540)
. ..-+.+-..++-|...|.|.+|+...+.... -.|.+.++++.++.+-..|.+++.|+.+..|+.... .....
T Consensus 63 ~--~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~ 139 (541)
T KOG4547|consen 63 A--KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRI 139 (541)
T ss_pred H--hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeee
Confidence 0 0112344567788888899999988776322 357889999999999999999999999999999877 77777
Q ss_pred eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCC-----CCCEEEEEeCCCcE
Q 009188 439 YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPA-----NPHMLASASDDRTI 513 (540)
Q Consensus 439 ~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~~l~s~~~Dg~i 513 (540)
+.........+.. +||+..+++++ +.|.+||+++++.+..|.||.++|++++|... |.++|.+...+..+
T Consensus 140 ~~~~~~~~~sl~i---s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 140 WKEQKPLVSSLCI---SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eccCCCccceEEE---cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 7776665444332 88999999887 57999999999999999999999999999876 66677788888889
Q ss_pred EEecCCC
Q 009188 514 RIWGLKD 520 (540)
Q Consensus 514 ~iw~~~~ 520 (540)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 9998765
No 267
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.4e-10 Score=112.80 Aligned_cols=286 Identities=13% Similarity=0.146 Sum_probs=197.8
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC------------CCeEEEeeCCCcE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD------------DQQLLTCGVEEAV 300 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~------------~~~l~s~~~dg~i 300 (540)
.-.++.|+|.| ++|.|+. ..|.+-|... .+.+..+.-|...|+.+.|.|. .-.||++...|.|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s---~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRS---LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhh---hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 35688999987 6777776 4677777643 3667788899999999999872 1256777788999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEec---CC-CEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc-CCCEE
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHP---DR-KWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS-DGKQI 375 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l 375 (540)
.+||...+..+..+..+..++..++|-+ +. ..|++-....+|.+|+..+++..-..........|+.++| |.+.+
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 9999999999989999999999999987 33 4667777778999999988877665555555677788888 45777
Q ss_pred EEEecCCeEEEEECCC--------ceEEEe-ecCC------------c-------------eeEEEEcCCCCEEEEEecC
Q 009188 376 ITMCKESALLLLDREA--------KVERYI-EEDQ------------T-------------ITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~--------~~~~~~-~~~~------------~-------------i~~~~~s~~~~~l~~~~~d 421 (540)
...+..|.+.+.+.-. +..... .|.. . ...++|+|.-+.++.....
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 7777788777766432 111111 1100 0 1235678887777777778
Q ss_pred CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc----------------eeEeec
Q 009188 422 QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD----------------LIGALP 485 (540)
Q Consensus 422 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----------------~~~~~~ 485 (540)
..+.++|++-. ..+....-..+....+.+.. .+....++++..||.+.+|-.+... ....+.
T Consensus 252 rellv~dle~~-~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 252 RELLVFDLEYE-CCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVR 329 (1062)
T ss_pred cceEEEcchhh-ceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEe
Confidence 99999999876 55555555555444555555 5667789999999999999765421 111111
Q ss_pred C-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 486 G-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 486 ~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
. .+-.+......|..+..++.--.+|.+.+|.+++++...
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 1 112233334455544455555568889999999877654
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.31 E-value=1.8e-09 Score=100.50 Aligned_cols=279 Identities=15% Similarity=0.251 Sum_probs=191.1
Q ss_pred CcCcCCCCcceEEecccCcCc--EE-EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC-
Q 009188 213 QCGRDQIPSRTLQILQGHTDE--VW-FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD- 288 (540)
Q Consensus 213 ~~~~~~~~~~~~~~l~~h~~~--V~-~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~- 288 (540)
.+.++......+..+.+-..+ .+ -+.|+.+..|+|--.. ..+.|+++..+-.......++ ...|....|+|.+
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n 186 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGN 186 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhcc--ccceeeEEecCCCC
Confidence 344455556666777766666 66 7889999888876533 469999873221111112222 3568888999864
Q ss_pred -CeEEE-----eeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEe-----------CCCcEEEEecCCce
Q 009188 289 -QQLLT-----CGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA-----------NDKSICMWELGGKE 351 (540)
Q Consensus 289 -~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~iwd~~~~~ 351 (540)
..|+. .+..+.+++|.+..+..+.+-.-....-..+.|.+.|+++++-. ....++++++....
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 34444 35678899999988776655444444445788999998776421 12468888887655
Q ss_pred EEEeeccccceEEEEEEccCCCEEEEEe--cCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecC---CeEEE
Q 009188 352 LECWKGQRTLKISDLEVTSDGKQIITMC--KESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN---QEIHL 426 (540)
Q Consensus 352 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i 426 (540)
+.... ...++|.+.+|.|.++.+++.+ ....+.++|+++. ..+......-+.+.|+|.++++++++-+ |.+.+
T Consensus 267 i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 267 IPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred cceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEE
Confidence 54443 4456899999999998877555 7788999999988 5555566677789999999999997654 68999
Q ss_pred EEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee------CCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCC
Q 009188 427 WNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS------EDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPAN 500 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 500 (540)
||..+....+..+.+.. ...|.|+|++.++.+.. .|..|.|||+...... ..+.+.|.|.+
T Consensus 345 ~~~~~rf~~~~~~~~~n-----~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~ 411 (561)
T COG5354 345 FDPAGRFKVAGAFNGLN-----TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSG 411 (561)
T ss_pred eccCCceEEEEEeecCC-----ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCc
Confidence 99988866666666554 34677799999988764 3778999998654332 34566777766
Q ss_pred CCEEEEEeCC
Q 009188 501 PHMLASASDD 510 (540)
Q Consensus 501 ~~~l~s~~~D 510 (540)
+ ...+.+.+
T Consensus 412 ~-~~ttsSs~ 420 (561)
T COG5354 412 Q-YVTTSSSC 420 (561)
T ss_pred c-cceeeccC
Confidence 4 44444433
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=2.8e-11 Score=113.24 Aligned_cols=284 Identities=13% Similarity=0.246 Sum_probs=188.0
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC----ceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG----GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE 297 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 297 (540)
-.+..+.||...|..++--.+.+-+++++.|.+|++|.+...+ ...+..+++.|..+|.++.|-.+.++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 3456788999999999888888889999999999999987542 234778899999999999999998888764 8
Q ss_pred CcEEEEECCCCeEEEEeec--CCCcEEEEEEec--CCCEEEEE-eCCCcEEEEecCCceEEEee-----ccccceEEEEE
Q 009188 298 EAVRRWDVSSGNCLHVYEK--AGLGLVSCGWHP--DRKWIFSG-ANDKSICMWELGGKELECWK-----GQRTLKISDLE 367 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i~ 367 (540)
|.|.+||.--|+.+..+.. ..+.+..+..-+ +...+++| +...+|+++|.+..+..... .....-+++++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8899999988876653321 112223333333 34445444 67889999999875543322 23345689999
Q ss_pred EccCCCEEEEEecCCeEEEEECCCceEEE--eecCCceeEEEEcCCCCEEEEEecCCeEEE-EEecCCceeeeEeeCCcC
Q 009188 368 VTSDGKQIITMCKESALLLLDREAKVERY--IEEDQTITSFSLSRDNKFLLVNLLNQEIHL-WNIEGEVKLVAKYKGHKR 444 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~ 444 (540)
+.+.|++++++-.+|.+.+.|.+++.... .........++ .|..+.++....|..+.+ |..-.+ ......+....
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg-imh~q~kpppe 961 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDKPPPE 961 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccCCCCc
Confidence 99999999999999999999999876322 12222222222 345566666677888877 765544 22222222222
Q ss_pred CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC----CceeEeec--CCCCCeEEEEeCCCCCCEEEEEeCCCcEEE
Q 009188 445 SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS----CDLIGALP--GHSGAVNCVSWNPANPHMLASASDDRTIRI 515 (540)
Q Consensus 445 ~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~i 515 (540)
+. .|...-|.-+++......+.+|.-.. ...+..++ ...+..++++--|-+. -+..|...|.|.+
T Consensus 962 pa-----hflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~-afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PA-----HFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC-AFLAGNEHGAIAL 1032 (1034)
T ss_pred ch-----hhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccc-hhhccCCCCceee
Confidence 21 11123345577777777778884211 11111222 2346788888888774 6778888888875
No 270
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=7.4e-10 Score=107.98 Aligned_cols=311 Identities=14% Similarity=0.137 Sum_probs=204.7
Q ss_pred cCCCCcceEEecccCcCcEEEEEEecC------------CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEE
Q 009188 216 RDQIPSRTLQILQGHTDEVWFLQFSHN------------GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS 283 (540)
Q Consensus 216 ~~~~~~~~~~~l~~h~~~V~~~~~sp~------------g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 283 (540)
.+....+.++.+..|...|+.+.|.|- .-.||++...|.|.+||.... ..+..+..|.+++..++
T Consensus 40 VDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcchhhee
Confidence 355567788899999999999999872 125777888899999999765 45566788999999999
Q ss_pred ECc---CC-CeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCC-------ce
Q 009188 284 WSS---DD-QQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGG-------KE 351 (540)
Q Consensus 284 ~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-------~~ 351 (540)
|-+ +. ..|++-.....+.+|+..+|+.............|+.+.| |.+.+..-+..|.+.+.+.-+ ++
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 976 33 4666667788899999999999999888787888899999 777888878888887776521 22
Q ss_pred EEEeeccccc-------------------------eEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCcee
Q 009188 352 LECWKGQRTL-------------------------KISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTIT 404 (540)
Q Consensus 352 ~~~~~~~~~~-------------------------~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~ 404 (540)
...+...+.. ....++|+|.-+.++...-...+.++|++-.. .......+.+.
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~ak 276 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAK 276 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcc
Confidence 2222222111 01125667877777777788889999987755 23333445555
Q ss_pred EEEEcCCC--CEEEEEecCCeEEEEEecCCceeeeE----eeC-----------CcC-CeeEEEeeeccCCCcEEEEeeC
Q 009188 405 SFSLSRDN--KFLLVNLLNQEIHLWNIEGEVKLVAK----YKG-----------HKR-SRFVIRSCFGGLEQAFIASGSE 466 (540)
Q Consensus 405 ~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~-----------~~~-~~~~i~~~~~~~~~~~l~s~s~ 466 (540)
-+.+-|++ ..+++...||.+.+|-.+.......+ +.. ... ......+|. .+...++.--.
T Consensus 277 fv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cP--s~~sa~avl~s 354 (1062)
T KOG1912|consen 277 FVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCP--STPSALAVLYS 354 (1062)
T ss_pred eeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCC--CChhhhhhhhh
Confidence 66776665 67999999999999987643111111 100 000 001111221 12333444445
Q ss_pred CCcEEEEECCCCceeE----------------------------e---ecCCCCCeEEEEeCC-----------CCC---
Q 009188 467 DSQVYIWHRASCDLIG----------------------------A---LPGHSGAVNCVSWNP-----------ANP--- 501 (540)
Q Consensus 467 dg~i~iwd~~~~~~~~----------------------------~---~~~h~~~v~~l~~~~-----------~~~--- 501 (540)
+|.+.+|.+.+|+.-. . -.+|....++....| .++
T Consensus 355 ~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~ 434 (1062)
T KOG1912|consen 355 SGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPA 434 (1062)
T ss_pred cchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccc
Confidence 6778888777543110 0 013555555544433 111
Q ss_pred ---CEEEEEeCCCcEEEecCCCCCccccccCCC
Q 009188 502 ---HMLASASDDRTIRIWGLKDLNVKRKDCHSN 531 (540)
Q Consensus 502 ---~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~ 531 (540)
.+++.|...|+|.++|+.++.+.+..+.+.
T Consensus 435 ~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht 467 (1062)
T KOG1912|consen 435 GTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHT 467 (1062)
T ss_pred eeeeeEEeecCCceEEEEEecchhhhhhhcccc
Confidence 178889999999999999998877644443
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=6.1e-11 Score=114.25 Aligned_cols=233 Identities=13% Similarity=0.198 Sum_probs=168.0
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe---------------EEEEeecCCCcEEEEEEecCCCEEEEEeCC
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN---------------CLHVYEKAGLGLVSCGWHPDRKWIFSGAND 339 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 339 (540)
......|+.|+.+..++++||.||.++|..+.+.. .-+++.+|...|..+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 44567899999999999999999999999876521 234667999999999999999999999999
Q ss_pred CcEEEEecCCceEE--EeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee-cCCceeEEEEcCCCCEEE
Q 009188 340 KSICMWELGGKELE--CWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE-EDQTITSFSLSRDNKFLL 416 (540)
Q Consensus 340 g~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~ 416 (540)
|.|.+|-+-.+... .......+-|.+++|+.||..++....||.|.+=.+.+....-.. .......+.|++|.+.++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999998443321 122334457999999999999999999999998887776522222 223345789999999999
Q ss_pred EEecCCeEEEEEecCCcee-------ee---EeeCCcCCeeEEEe-----eeccCCCcEEEEeeCCCcEEEEECCC-Cce
Q 009188 417 VNLLNQEIHLWNIEGEVKL-------VA---KYKGHKRSRFVIRS-----CFGGLEQAFIASGSEDSQVYIWHRAS-CDL 480 (540)
Q Consensus 417 ~~~~dg~i~i~d~~~~~~~-------~~---~~~~~~~~~~~i~~-----~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~ 480 (540)
.+-.+|.+.+||..++... +. .+......+..+.+ ....|+...++.+-.+|.+.|-.-.+ ..+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999998764211 11 11111111111111 22356888899999999988875433 333
Q ss_pred eEeecCCCCCeEEEEeCCCCCCEEEEEeCC
Q 009188 481 IGALPGHSGAVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 481 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 510 (540)
+-.-. .-.|....|+|+|. +|+.+|.|
T Consensus 253 vv~dt--gm~~vgakWnh~G~-vLAvcG~~ 279 (1189)
T KOG2041|consen 253 VVVDT--GMKIVGAKWNHNGA-VLAVCGND 279 (1189)
T ss_pred eEEec--ccEeecceecCCCc-EEEEccCc
Confidence 32222 25688899999997 88888864
No 272
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.27 E-value=5.3e-08 Score=89.02 Aligned_cols=222 Identities=11% Similarity=0.137 Sum_probs=148.2
Q ss_pred EEEECc-CCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-cCCCEEEEEeCCCcEEEEecCCceEEEeecc
Q 009188 281 CVSWSS-DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWH-PDRKWIFSGANDKSICMWELGGKELECWKGQ 358 (540)
Q Consensus 281 ~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 358 (540)
+++|.+ ++.++++--..+.|..|+..++.... +.... ...+++. ++ ..++.+...+ +.++|..+++...+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578887 66666666678899999998876543 32222 6777888 55 4566666655 55669888766554432
Q ss_pred -----ccceEEEEEEccCCCEEEEEecC--------CeEEEEECCCceEEEeecCCceeEEEEcCCCCEEE-EEecCCeE
Q 009188 359 -----RTLKISDLEVTSDGKQIITMCKE--------SALLLLDREAKVERYIEEDQTITSFSLSRDNKFLL-VNLLNQEI 424 (540)
Q Consensus 359 -----~~~~v~~i~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i 424 (540)
.....++++++++|+..++.... |.+..++...........-...+.++|+|+++.|+ +-+..+.|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccccccee
Confidence 45678999999999977766543 66888898854455555567788999999998776 55668889
Q ss_pred EEEEecCCce---eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEe-CCCC
Q 009188 425 HLWNIEGEVK---LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSW-NPAN 500 (540)
Q Consensus 425 ~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~ 500 (540)
..|++..... ....+...........-+....+|++.++....+.|.++|.. |+.+..+.-....+++++| -++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence 9999964322 112221111111112222236789988888889999999977 9888887766568999999 4665
Q ss_pred CCEEEEEe
Q 009188 501 PHMLASAS 508 (540)
Q Consensus 501 ~~~l~s~~ 508 (540)
..+++|.+
T Consensus 238 ~~L~vTta 245 (246)
T PF08450_consen 238 KTLYVTTA 245 (246)
T ss_dssp SEEEEEEB
T ss_pred CEEEEEeC
Confidence 55666643
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.26 E-value=1e-08 Score=100.26 Aligned_cols=267 Identities=9% Similarity=0.032 Sum_probs=165.3
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL 321 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 321 (540)
.+..+++++.+|.+..+|..++ +................. ++..++.++.++.+..+|..+|+.+....... .+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG---~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETG---KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCC---cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-ee
Confidence 3667888888999999998765 333333322221122222 46778888899999999999999887765433 22
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceE-----EEEEEccCCCEEEEEecCCeEEEEECCCceEEE
Q 009188 322 VSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKI-----SDLEVTSDGKQIITMCKESALLLLDREAKVERY 396 (540)
Q Consensus 322 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 396 (540)
.+.... .+..++.++.+|.|..||.++++..-......... .+... .+..++.+..++.+..+|..++....
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 211111 34577888889999999998766543322211111 01111 12467788888999999988765332
Q ss_pred eec---CC---c---eeEEEEcC--CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee
Q 009188 397 IEE---DQ---T---ITSFSLSR--DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS 465 (540)
Q Consensus 397 ~~~---~~---~---i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s 465 (540)
... .. . ...+.-+| .+..+++++.+|.++.||..++ +.+......... .. ...+..++.++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~~~~~------~p-~~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDASSYQ------GP-AVDDNRLYVTD 286 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeeccCCcc------Cc-eEeCCEEEEEC
Confidence 211 00 0 00011111 3567888888999999999876 443333211110 00 12456778888
Q ss_pred CCCcEEEEECCCCceeEeecCCCC-CeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 466 EDSQVYIWHRASCDLIGALPGHSG-AVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 466 ~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
.||.++.+|..+|+.+........ ...+... .+. .+++++.||.|+++|..+++...+..
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 999999999999988765532211 2222222 243 78889999999999999999876543
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.26 E-value=1.1e-08 Score=100.18 Aligned_cols=258 Identities=10% Similarity=0.094 Sum_probs=159.0
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL 321 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 321 (540)
++..++.++.+|.+..+|..++. ........ +.+.+.... .+..++.++.++.+..||..+|+.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~---~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGK---ELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCc---EeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 56778888899999999987653 33322211 222211111 34567777889999999999999888775443221
Q ss_pred E-----EEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecccc----ce---EEEEEEc--cCCCEEEEEecCCeEEEE
Q 009188 322 V-----SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRT----LK---ISDLEVT--SDGKQIITMCKESALLLL 387 (540)
Q Consensus 322 ~-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~---v~~i~~~--~~~~~l~~~~~d~~i~~~ 387 (540)
. +... .+..++.+..+|.+..+|..+++..-...... .. ...+.-+ -.+..+++++.+|.++.+
T Consensus 179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 1 1111 23477888888999999997765432211100 00 0000001 135678888899999999
Q ss_pred ECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC
Q 009188 388 DREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED 467 (540)
Q Consensus 388 d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d 467 (540)
|..++............... ..+..+++++.+|.++.+|..++ +.+............ . . ...+..+++++.+
T Consensus 257 d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~s--s-p-~i~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLT--A-P-AVVGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEccccccCCccc--c-C-EEECCEEEEEeCC
Confidence 99887644333222222222 25677888889999999999877 443333211111000 0 0 1135688899999
Q ss_pred CcEEEEECCCCceeEeecCCCCCeEE-EEeCCCCCCEEEEEeCCCcEEEe
Q 009188 468 SQVYIWHRASCDLIGALPGHSGAVNC-VSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 468 g~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
|.|+++|..+|+.+..++.+...+.. ..+. ++ .|+.++.||.|..|
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD--GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC--EEEEEeCCceEEEe
Confidence 99999999999999888866544332 2332 33 57788999999876
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.26 E-value=7.4e-11 Score=114.10 Aligned_cols=283 Identities=13% Similarity=0.192 Sum_probs=183.6
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC--CCeEEEEECcCC---CeEEEeeCCCcEEEEEC
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ--KPVSCVSWSSDD---QQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~ 305 (540)
.+++..+..+|.|+-+|.++.-| +.+-|++.... ..+-+ .|. -.|-.+.|+|.. ..+++.+ ...-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~--ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT--PPRWL-HHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCC--Cceee-eccCcchhcceecccCCCCceeEEecC-cchhhhhhh
Confidence 46788899999999999998876 55666653321 11111 222 236677787743 3444444 445668887
Q ss_pred CC---CeEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCce--EEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 306 SS---GNCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKE--LECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 306 ~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
.. ......+.+|...|+.+.|+|.. ..+++++.|-.+..||+++.. ...+...+ .....++|+.-...+.+.+
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~-s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR-SAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc-ccCceeeecccCcchhhhc
Confidence 53 34455667899999999999954 578899999999999998633 22333333 3566788887777777778
Q ss_pred cCCeEEEEECCCce---EEEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeecc
Q 009188 380 KESALLLLDREAKV---ERYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455 (540)
Q Consensus 380 ~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 455 (540)
....+.+||.+.+. .....+...++++.|.. ....+.+++.||+|+.||................++..-+...+.
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 88899999998755 44555677778888866 346788899999999999875422222222222221111111111
Q ss_pred CCCcEEE---------EeeCCCcEEEEECCC-CceeEeecCCCCCeEEEEeCCCC---------CCEEEEEeCCCcEEEe
Q 009188 456 LEQAFIA---------SGSEDSQVYIWHRAS-CDLIGALPGHSGAVNCVSWNPAN---------PHMLASASDDRTIRIW 516 (540)
Q Consensus 456 ~~~~~l~---------s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~---------~~~l~s~~~Dg~i~iw 516 (540)
+|.++. .---+..-..|+..+ .++++.+.||.+.|....|-..+ ...|+|-|.|.++++|
T Consensus 258 -~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 258 -EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred -ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 111211 111122223344333 46789999999999888875432 2589999999999999
Q ss_pred cCCC
Q 009188 517 GLKD 520 (540)
Q Consensus 517 ~~~~ 520 (540)
-+.+
T Consensus 337 pI~~ 340 (1081)
T KOG0309|consen 337 PIDS 340 (1081)
T ss_pred eccH
Confidence 8865
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=1.3e-08 Score=110.37 Aligned_cols=241 Identities=10% Similarity=0.113 Sum_probs=159.8
Q ss_pred EEEEECcC-CCeEEEeeCCCcEEEEECCCCeEEEEeecCC--------------CcEEEEEEecCCCEEEEEeC-CCcEE
Q 009188 280 SCVSWSSD-DQQLLTCGVEEAVRRWDVSSGNCLHVYEKAG--------------LGLVSCGWHPDRKWIFSGAN-DKSIC 343 (540)
Q Consensus 280 ~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~-dg~i~ 343 (540)
..+++++. +..+++-+.++.|.+||.. |..+..+.... .....++++++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45788764 5566666778889999975 55444443211 13578899998887766654 56799
Q ss_pred EEecCCceEEEeeccc----------------cceEEEEEEcc-CCCEEEEEecCCeEEEEECCCceEEEeec-------
Q 009188 344 MWELGGKELECWKGQR----------------TLKISDLEVTS-DGKQIITMCKESALLLLDREAKVERYIEE------- 399 (540)
Q Consensus 344 iwd~~~~~~~~~~~~~----------------~~~v~~i~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------- 399 (540)
.+|..++.+..+.... ......++++| ++..+++...++.|++||..+........
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 9999776665442210 12346899999 56666777788999999987765332211
Q ss_pred ---------CCceeEEEEcCCCCEEE-EEecCCeEEEEEecCCceeeeE------------eeCCcCC------eeEEEe
Q 009188 400 ---------DQTITSFSLSRDNKFLL-VNLLNQEIHLWNIEGEVKLVAK------------YKGHKRS------RFVIRS 451 (540)
Q Consensus 400 ---------~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~~------~~~i~~ 451 (540)
-.....++++|+++.++ +.+.++.|++||+.++...... +....+. .... .
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~-G 808 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL-G 808 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc-e
Confidence 12356799999998554 5556789999998765221110 0000000 0011 1
Q ss_pred eeccCCCcEEEEeeCCCcEEEEECCCCceeEeec-------------CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 452 CFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP-------------GHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
+.++++|.++++-+.++.|++||..++....... +.-.....++++++|. ++++-+.++.|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEEC
Confidence 2236788888888999999999998776553221 1123578899999995 8999999999999999
Q ss_pred CCCCc
Q 009188 519 KDLNV 523 (540)
Q Consensus 519 ~~~~~ 523 (540)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98765
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=5.3e-08 Score=105.74 Aligned_cols=239 Identities=12% Similarity=0.142 Sum_probs=155.9
Q ss_pred EEEEEecC-CCeEEEEeCCCcEEEEEeecCCceEEEEEecC--------------CCCCeEEEEECcCCCeEEEee-CCC
Q 009188 235 WFLQFSHN-GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG--------------HQKPVSCVSWSSDDQQLLTCG-VEE 298 (540)
Q Consensus 235 ~~~~~sp~-g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~--------------h~~~v~~l~~s~~~~~l~s~~-~dg 298 (540)
..++++++ |.++++-+.++.|++||.+.. . ...+.+ +-.....++++++++.|+.+. ..+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~--~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN--F--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC--E--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 45788874 666777777889999987532 1 222211 112367899999888766654 456
Q ss_pred cEEEEECCCCeEEEEeecC-----------------CCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeecc--
Q 009188 299 AVRRWDVSSGNCLHVYEKA-----------------GLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQ-- 358 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 358 (540)
.|+++|+.++. +.++.+. -.....++++| ++..+++.+.++.|++||..++....+...
T Consensus 647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 79999987765 3333211 11246789999 555666667788999999977655433211
Q ss_pred ------------ccceEEEEEEccCCCEEE-EEecCCeEEEEECCCceEEEeec-----------------------CCc
Q 009188 359 ------------RTLKISDLEVTSDGKQII-TMCKESALLLLDREAKVERYIEE-----------------------DQT 402 (540)
Q Consensus 359 ------------~~~~v~~i~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~-----------------------~~~ 402 (540)
.......++++|++..++ +-+.++.|++||..+........ -..
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 112456799999998554 55567899999987654221110 113
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCC-----------eeEEEeeeccCCCcEEEEeeCCCcEE
Q 009188 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS-----------RFVIRSCFGGLEQAFIASGSEDSQVY 471 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~s~s~dg~i~ 471 (540)
...++++++|+.+++.+.++.|++||..+. ... .+.+.... -.....+..+++|+++++-+.++.|+
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATK-RVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCC-eEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 468999999998888889999999998765 322 22221100 00111223367899999999999999
Q ss_pred EEECCCCce
Q 009188 472 IWHRASCDL 480 (540)
Q Consensus 472 iwd~~~~~~ 480 (540)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988765
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=3.3e-09 Score=92.00 Aligned_cols=224 Identities=13% Similarity=0.126 Sum_probs=147.5
Q ss_pred CcEEEEECCCCeEEE---EeecCCCcEEEEEEec---CCC-EEEEEeCCCcEEEEecCCceEEEeeccc------cceEE
Q 009188 298 EAVRRWDVSSGNCLH---VYEKAGLGLVSCGWHP---DRK-WIFSGANDKSICMWELGGKELECWKGQR------TLKIS 364 (540)
Q Consensus 298 g~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~ 364 (540)
|.+.+|++...+... ......+.+..+.|.. +|. .++-+...|.|.++............+- .....
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 455666655443322 1112234556666654 444 4556677888888877543322222111 11245
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCCceeeeE-
Q 009188 365 DLEVTSDGKQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGEVKLVAK- 438 (540)
Q Consensus 365 ~i~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~- 438 (540)
++.|++.+..++++..+|.+.+.+..... .....|+.+.....|+. +.+.+.+|+.|+.+..||++.....+..
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 77888999999999999999866655543 34567888888888876 4478999999999999999944333333
Q ss_pred eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 439 YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-CDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 439 ~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.+.|...+..|.+. .|.+.++++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.....+..++.-.-.+|-+
T Consensus 206 ~kvH~~GV~SI~ss--~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSS--PPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred ceeeecceEEEecC--CCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 45666665555443 56788999999999999999984 67765544 4589999999996543444444444566766
Q ss_pred CCCCCcc
Q 009188 518 LKDLNVK 524 (540)
Q Consensus 518 ~~~~~~~ 524 (540)
.+.+...
T Consensus 283 ~~~~~~e 289 (339)
T KOG0280|consen 283 SSDKVLE 289 (339)
T ss_pred ecccccc
Confidence 6655433
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=2.4e-08 Score=92.32 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=121.6
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCC-cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDR-SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
--+|.+.|.-..+..+++-++.|..|| .+-|+|...+ ....+...-+.|.++..+++|++++.+.....+.+.|+
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence 346888899999988888999999999 8999998754 33456677788999999999999999998899999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC----cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK----SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
++|.....-+...+-|+...|+|+++++|-+--+| .|+++|+.++++........ .-.+-+|.||+++|..-+
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 99987766666778899999999999999887766 69999999988776554432 334557889998887654
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.18 E-value=2e-07 Score=87.37 Aligned_cols=251 Identities=11% Similarity=0.062 Sum_probs=151.6
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeC----------CCcEEEEEeecCCceEEEEEecCC-------CCCeEEEE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSN----------DRSAIIWEVDLNGGVTLKHKLSGH-------QKPVSCVS 283 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~ 283 (540)
.+.+..+..-..+-- + +||||+.|+.+.. +..|.+||..+. +....+..- ......++
T Consensus 37 ~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 37 GRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---LPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred CEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC---cEEeEEccCCCchhhccCccceEE
Confidence 444555543333322 4 9999998887755 688999999866 333333321 22344789
Q ss_pred ECcCCCeEEEee-C-CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEE-Ee---e
Q 009188 284 WSSDDQQLLTCG-V-EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELE-CW---K 356 (540)
Q Consensus 284 ~s~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~-~~---~ 356 (540)
++|||++|+... . +..|.+.|+.+++.+..+.... ...-...+++.. .+-+.||......+.. ++.. .. .
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~--~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF--FMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc--EEEeecCceEEEEecCCCceEEeeeeee
Confidence 999999999776 3 6889999999999998886533 222222222222 2333455444433321 1111 00 0
Q ss_pred ccccceE-EEEEEcc-CCCEEEEEecCCeEEEEECCCce------EEEee--------cCCceeEEEEcCCCCEEEEEe-
Q 009188 357 GQRTLKI-SDLEVTS-DGKQIITMCKESALLLLDREAKV------ERYIE--------EDQTITSFSLSRDNKFLLVNL- 419 (540)
Q Consensus 357 ~~~~~~v-~~i~~~~-~~~~l~~~~~d~~i~~~d~~~~~------~~~~~--------~~~~i~~~~~s~~~~~l~~~~- 419 (540)
.....++ ..-.+.+ +|+++.+... |.|.+.|+.... ..... ..+.+..++++|+++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 0000000 0003345 7877777666 999999965532 11111 123344599999999888843
Q ss_pred ---------cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc-EEEEee-CCCcEEEEECCCCceeEeec
Q 009188 420 ---------LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA-FIASGS-EDSQVYIWHRASCDLIGALP 485 (540)
Q Consensus 420 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~ 485 (540)
..+.|.++|..+. +.+..+.... ....+ .++++++ +|++.. .++.|.++|..+++.+.++.
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~-kvi~~i~vG~-~~~~i---avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTG-KRLRKIELGH-EIDSI---NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCccccccCCCCEEEEEECCCC-eEEEEEeCCC-ceeeE---EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 1257999999887 5555554322 22222 2388998 777666 57889999999999998874
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=121.95 Aligned_cols=220 Identities=14% Similarity=0.265 Sum_probs=162.5
Q ss_pred CeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC-CceEEEeeccccceEEEEE
Q 009188 289 QQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG-GKELECWKGQRTLKISDLE 367 (540)
Q Consensus 289 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~ 367 (540)
+.+..+..++...-|..+-+.. .++.+-..|.++.-+|...+.++|+.||.|++|... +..+..+.......++.+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred ccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 3333344445555554433222 223344568888888988899999999999999985 4555666665567899999
Q ss_pred EccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEe---cCCeEEEEEecCCceeeeEeeCCc
Q 009188 368 VTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNL---LNQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
|+.+|+.+..+..||.+.+|....+. .....|......+.|-. ..+++++ .++.+.+||..-....-..-..|.
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred hcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 99999999999999999999988544 44556777777777755 5566544 467899999754322222236777
Q ss_pred CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCc
Q 009188 444 RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 444 ~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
+..+++.. .|..+++++|+.+|.|++||++..++.+.++. ++ .. .++++++..|.|+||++....+
T Consensus 2337 ~gaT~l~~---~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2337 GGATVLAY---APKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred CCceEEEE---cCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hh-heeeccCcccceEEEEccccch
Confidence 77555544 68889999999999999999998888877764 44 33 4899999999999999999887
Q ss_pred ccc
Q 009188 524 KRK 526 (540)
Q Consensus 524 ~~~ 526 (540)
+..
T Consensus 2403 l~~ 2405 (2439)
T KOG1064|consen 2403 LHT 2405 (2439)
T ss_pred hhc
Confidence 765
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=4.9e-08 Score=95.48 Aligned_cols=192 Identities=13% Similarity=0.068 Sum_probs=126.0
Q ss_pred cEEEEEEecCCCe-EEEEeCC---CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CC--CcEEEEEC
Q 009188 233 EVWFLQFSHNGKY-LASSSND---RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VE--EAVRRWDV 305 (540)
Q Consensus 233 ~V~~~~~sp~g~~-l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d--g~i~iwd~ 305 (540)
.+....|+|||+. ++..+.+ ..|.++|+.++. ... +....+......|+|||+.++... .+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~~---lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KEK---IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EEE---EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 7789999999985 6654443 457777775442 222 223455566788999998776543 33 46888898
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-C--cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC-
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND-K--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE- 381 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d- 381 (540)
.+++... +..+........|+|||+.|+..+.. | .|.++|+.++.......... ....|+|||+.++.....
T Consensus 265 ~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCC
Confidence 8876443 43333333456899999988776643 3 68888888777655443221 124899999999877654
Q ss_pred --------CeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCC---eEEEEEecCC
Q 009188 382 --------SALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQ---EIHLWNIEGE 432 (540)
Q Consensus 382 --------~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~ 432 (540)
..|.+.|..++...............|+|||+.++..+..+ .+.+.++.+.
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 36888898777644444334445689999999887766432 3555565543
No 283
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.15 E-value=1.2e-10 Score=98.65 Aligned_cols=178 Identities=17% Similarity=0.236 Sum_probs=122.7
Q ss_pred CCCCCcccCCCCCCchHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccCh------HHHHHHHHHhcCChHHHHHHhccc
Q 009188 7 SEGDEDVIGPAGVIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSS------MVNLFTQQILDGHWDESLATLSKI 80 (540)
Q Consensus 7 ~~~~~~~~~~~~~~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~------~~~~~~~~i~~g~w~~~~~~l~~l 80 (540)
.+++|----.+-.+..+|+.+||+.||...||.++|..+.+|+|+..+.. +-.+++++|..|+-++|+..+.++
T Consensus 11 ~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 11 TKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred chhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 34555555666778899999999999999999999999999999988432 345778999999999999999998
Q ss_pred CCCChhhHhhHHHHHhhhhhhhcccccchhHHHHHHHhhccCCCCCc-hhHHHhh---cccccCCccccccCCCCccccc
Q 009188 81 GLVDESVVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKN-SRVRELS---SCIVSPPKCVVVCSPKQDIVRA 156 (540)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~-~~~~~l~---~~l~~~~~~~~~~~~~~~~~~~ 156 (540)
....=...+.+.|-+.+|+++||+..+...+|+.+.+..+.|..... +...++. .+|..+.....+.. ..-..
T Consensus 91 ~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~---~l~~~ 167 (228)
T KOG2659|consen 91 NPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSA---ELLSQ 167 (228)
T ss_pred ChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHH---HHHHH
Confidence 53222233457888999999999999999999999999999988743 3333333 23332221111000 01123
Q ss_pred ccHHHHHHHHhhcCCCCCCcC-hhHHHHHHHH
Q 009188 157 KSRPKLLEELQKLLPPMIMIP-ERRLEHLVEQ 187 (540)
Q Consensus 157 ~~r~~l~~~~~~~~~~~~~~p-~~rl~~ll~~ 187 (540)
+.|.++++.+...+-...-.+ ..++..+++.
T Consensus 168 s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~ 199 (228)
T KOG2659|consen 168 SLRQKVASEVNSAILASQEHESEPKLPFLLKL 199 (228)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 457777766655543222222 3456666633
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.14 E-value=1.6e-07 Score=100.04 Aligned_cols=284 Identities=12% Similarity=0.162 Sum_probs=180.5
Q ss_pred CcEEEEEEecCCCeEE--EEeCCC--cEEEEEeecCCceEEEEEec-----CCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 232 DEVWFLQFSHNGKYLA--SSSNDR--SAIIWEVDLNGGVTLKHKLS-----GHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~--tg~~dg--~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
..+...+|.+....+. ++.... .|.+..............+. ...+.|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3567777777655443 332222 23444333222223333333 34568999999999999999999999999
Q ss_pred E----ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-------------c--eE---------EE
Q 009188 303 W----DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-------------K--EL---------EC 354 (540)
Q Consensus 303 w----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------~--~~---------~~ 354 (540)
. +..+.. +.....-...|.+++||||+..++..+.++++.+.+-.- + +. .+
T Consensus 102 ~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 9 544333 333344567899999999999999999999887764320 0 00 00
Q ss_pred ee------------cc-----------ccceEEEEEEccCCCEEEEEec---C---CeEEEEECCCceEEEe-ecCCcee
Q 009188 355 WK------------GQ-----------RTLKISDLEVTSDGKQIITMCK---E---SALLLLDREAKVERYI-EEDQTIT 404 (540)
Q Consensus 355 ~~------------~~-----------~~~~v~~i~~~~~~~~l~~~~~---d---~~i~~~d~~~~~~~~~-~~~~~i~ 404 (540)
+. .. ....-..++|..||.++++.+- . ..+++|+..+...... ...+--.
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~ 260 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEG 260 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccC
Confidence 00 00 1123457889999999998874 2 4689999885443222 2233346
Q ss_pred EEEEcCCCCEEEEEec---CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce-
Q 009188 405 SFSLSRDNKFLLVNLL---NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL- 480 (540)
Q Consensus 405 ~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 480 (540)
+++|-|.|+++++... ...|.+|.-++...-...+.... ....+....|+.++..||..-.|. |.+|-..+..-
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~-~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY 338 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDP-EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY 338 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCC-CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE
Confidence 7899999999998765 34677777554322222222211 122344556699999999977665 99999877542
Q ss_pred -eEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 481 -IGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 481 -~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.+.+.- ....+..+.|+|..+..|.....+|.+..+++
T Consensus 339 LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 339 LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 233332 23345569999998878888888777766544
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.5e-07 Score=92.01 Aligned_cols=207 Identities=10% Similarity=0.058 Sum_probs=129.6
Q ss_pred CeEEEEECcCCCe-EEEeeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEE-eCC--CcEEEEecCCc
Q 009188 278 PVSCVSWSSDDQQ-LLTCGVE---EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSG-AND--KSICMWELGGK 350 (540)
Q Consensus 278 ~v~~l~~s~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~ 350 (540)
......|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7788999999985 6654443 459999998887655443 44556677899999877654 333 46888898887
Q ss_pred eEEEeeccccceEEEEEEccCCCEEEEEecC-C--eEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecC------
Q 009188 351 ELECWKGQRTLKISDLEVTSDGKQIITMCKE-S--ALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN------ 421 (540)
Q Consensus 351 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------ 421 (540)
....+..... ......|+|||+.++..+.. + .|++.|+.++........+.. ...|+|+|+.++.....
T Consensus 268 ~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 268 TLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred cEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcccC
Confidence 7666544332 23456799999988877633 3 688888887664333222222 35899999998877654
Q ss_pred ---CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC---cEEEEECCCCceeEeecCCCCCeEEE
Q 009188 422 ---QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS---QVYIWHRASCDLIGALPGHSGAVNCV 494 (540)
Q Consensus 422 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l 494 (540)
..|.+.|+.++. ...+...... . ...|+|+|+.++..+.++ .+.+.++.. .....+....+.+...
T Consensus 346 ~~~~~I~v~d~~~g~--~~~LT~~~~~---~-~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 346 KNTFNLYLISTNSDY--IRRLTANGVN---Q-FPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGKIQSI 417 (419)
T ss_pred CCCcEEEEEECCCCC--eEECCCCCCc---C-CeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCccCCC
Confidence 267888887652 2233222111 1 233489999877665432 366666643 3333343333444433
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=3.8e-09 Score=92.26 Aligned_cols=244 Identities=16% Similarity=0.299 Sum_probs=165.3
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC--ceEEEEEecCCC------------CCeEEEEECcCC--CeEEE
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG--GVTLKHKLSGHQ------------KPVSCVSWSSDD--QQLLT 293 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~--~~l~s 293 (540)
..+.|+++.|...|.||++|...|.|.+|.-.... ..+....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999754321 123334456664 347888887654 35666
Q ss_pred eeCCCcEEEEECCCCeE------------------------------------------EEEe-ecCCCcEEEEEEecCC
Q 009188 294 CGVEEAVRRWDVSSGNC------------------------------------------LHVY-EKAGLGLVSCGWHPDR 330 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~------------------------------------------~~~~-~~~~~~v~~~~~~~~~ 330 (540)
.+.|.+|++|.+..... .+.+ ..|..-+.++.++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998753210 0001 2456678888998888
Q ss_pred CEEEEEeCCCcEEEEecCC----ceEEEeeccc----cceEEEEEEccCC-CEEEEEecCCeEEEEECCCce-----EEE
Q 009188 331 KWIFSGANDKSICMWELGG----KELECWKGQR----TLKISDLEVTSDG-KQIITMCKESALLLLDREAKV-----ERY 396 (540)
Q Consensus 331 ~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~----~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~-----~~~ 396 (540)
..++++ .|-.|.+|++.- ..+.....+. ..-|++..|+|.. ..+...+..|.|++.|++... ...
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 456799999852 2222222211 1246778888864 556677889999999988422 111
Q ss_pred -------------eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC------------CeeEEEe
Q 009188 397 -------------IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR------------SRFVIRS 451 (540)
Q Consensus 397 -------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~~~~i~~ 451 (540)
.+....|..+.|+++|+++++-. --++++||.+....++.+...|.. .++.---
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 12245788899999999998765 457999999988788888765542 2222222
Q ss_pred eeccCCCcEEEEeeCCCcEEEEEC
Q 009188 452 CFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
+.++.+...+.+|+..+..-+|-.
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcccccccccccceeeecc
Confidence 233677788889998888777753
No 287
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.4e-08 Score=94.35 Aligned_cols=199 Identities=13% Similarity=0.146 Sum_probs=136.4
Q ss_pred CcCcEEEEEEecCCC--eEEE-----EeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeE-EEee--CC--
Q 009188 230 HTDEVWFLQFSHNGK--YLAS-----SSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL-LTCG--VE-- 297 (540)
Q Consensus 230 h~~~V~~~~~sp~g~--~l~t-----g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~--~d-- 297 (540)
|...|+.+.+||.+. .+|+ +|.-+.++||.+...........-.-....=..+.|++-|.-| +.++ -|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 678899999999743 4554 3455789999876322111111111112223457888876533 2222 22
Q ss_pred -------CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEE--eCCCcEEEEecCCceEEEeeccccceEEEEEE
Q 009188 298 -------EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSG--ANDKSICMWELGGKELECWKGQRTLKISDLEV 368 (540)
Q Consensus 298 -------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 368 (540)
.++++.++....+.-.+ ...++|.++.|+|+++.|+++ -.-..+.|+|++...+..+.. ++-+++-|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e---gpRN~~~f 319 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE---GPRNTAFF 319 (566)
T ss_pred CccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC---CCccceEE
Confidence 35888887733444333 446799999999999877654 455689999998877655444 35678999
Q ss_pred ccCCCEEEEEec---CCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEec------CCeEEEEEecCC
Q 009188 369 TSDGKQIITMCK---ESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLL------NQEIHLWNIEGE 432 (540)
Q Consensus 369 ~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~ 432 (540)
+|.|++++.++- .|.+-+||..+.+.........-+-+.|+|||.++++++. |+.++||+..+.
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 999999998774 4789999999866444444455667899999999999875 678999999765
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=1.4e-07 Score=82.38 Aligned_cols=233 Identities=15% Similarity=0.142 Sum_probs=140.3
Q ss_pred EEECcCCCeEEEeeCCCcEEEEECCCC--eEEEEee---cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee
Q 009188 282 VSWSSDDQQLLTCGVEEAVRRWDVSSG--NCLHVYE---KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK 356 (540)
Q Consensus 282 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 356 (540)
++.+.+|+.||.. .|..|.|=..++. .++.... .....-..++|+||+..||.+...|+|+++|+.+..+....
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 4566788777764 5666666654432 2222222 23345678999999999999999999999999876655443
Q ss_pred ccc------cceEEEEEEccC------CCEEEEEecCCeEEEEECCCc--e-----E--EEe-ecCCceeEEEEcCCCCE
Q 009188 357 GQR------TLKISDLEVTSD------GKQIITMCKESALLLLDREAK--V-----E--RYI-EEDQTITSFSLSRDNKF 414 (540)
Q Consensus 357 ~~~------~~~v~~i~~~~~------~~~l~~~~~d~~i~~~d~~~~--~-----~--~~~-~~~~~i~~~~~s~~~~~ 414 (540)
... ...|..+.|.+. ...|++....|.++-|-+..+ . . .+. .....|+++.++|..+.
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 322 234566666432 235667777777776654221 1 1 111 23678999999999999
Q ss_pred EEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc------EEEEECCCCceeEeecCCC
Q 009188 415 LLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ------VYIWHRASCDLIGALPGHS 488 (540)
Q Consensus 415 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~------i~iwd~~~~~~~~~~~~h~ 488 (540)
|++|+.... +.+ .-.........-+.....|....+. ..+|+. -.+|.+-+.+.........
T Consensus 162 LlVgG~~~~------~~~-----~s~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 162 LLVGGCEQN------QDG-----MSKASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred EEEeccCCC------CCc-----cccccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeeccceeeeeccccCC
Confidence 998875432 000 0001111222222222233322222 222221 2344443333322223356
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 489 GAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 489 ~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
..|..|..+|||. +||+...+|.|.+|++.+.++.++..
T Consensus 230 d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 230 DGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcccc
Confidence 7899999999996 99999999999999999988877643
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.4e-09 Score=98.13 Aligned_cols=251 Identities=14% Similarity=0.141 Sum_probs=179.6
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC-CCcEEEEECCCC
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV-EEAVRRWDVSSG 308 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~ 308 (540)
|.+.|+.+.-+ -.+++.+++.||.++.|.-......+....+..|...|.+++.+-++.++.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77778777655 3568999999999999976543455677778889999999999999999999777 999999999887
Q ss_pred eEEEEeecCCCcEEEEEEecCCC---EEEEE-eCCCcEEEEecCC--ceEEEeeccccceEEEEEEccCCCEEEEEecCC
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRK---WIFSG-ANDKSICMWELGG--KELECWKGQRTLKISDLEVTSDGKQIITMCKES 382 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~---~l~~~-~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~ 382 (540)
..+..++...-+=.+..+...|. .++++ -.+|.+.++|-.. .+...+...|..+|..+.+.+-+..+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 65544433221111111222221 33333 4567899999854 345566777888999999999999999999999
Q ss_pred eEEEEECCCc-------e----------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc--
Q 009188 383 ALLLLDREAK-------V----------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-- 443 (540)
Q Consensus 383 ~i~~~d~~~~-------~----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 443 (540)
.|..|..... . ..+........++.|+|++..+.+-..|..|++++.+++ +.++.+....
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~ 245 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTD 245 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccchh
Confidence 9999998741 0 112234567899999999999999999999999999875 3322221100
Q ss_pred -----------------------------CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee
Q 009188 444 -----------------------------RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 444 -----------------------------~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 484 (540)
+.......+| ...+++|+-|+-=| |++.++.++..+..+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f-des~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF-DESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE-cCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 1112233444 67788888887765 788888887776654
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=5.4e-10 Score=104.78 Aligned_cols=239 Identities=14% Similarity=0.248 Sum_probs=163.9
Q ss_pred EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-------CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCc
Q 009188 269 KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-------GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKS 341 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 341 (540)
...+.+|...|..++--.+.+.+++++.|++|++|.++. ..|..+++.|+.+|.++.|-.+.+++++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 456789999999988877888999999999999999864 3477888999999999999988877765 4788
Q ss_pred EEEEecCCceE-EEee-ccccceEEEEEEcc--CCCEEEEE-ecCCeEEEEECCCce--EE--E---eecCCceeEEEEc
Q 009188 342 ICMWELGGKEL-ECWK-GQRTLKISDLEVTS--DGKQIITM-CKESALLLLDREAKV--ER--Y---IEEDQTITSFSLS 409 (540)
Q Consensus 342 i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~--~~~~l~~~-~~d~~i~~~d~~~~~--~~--~---~~~~~~i~~~~~s 409 (540)
|.+||.--+.+ .+.. ....+.+..+..-+ +...++++ +...+|+++|.+... .. . ...+..+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999743322 2111 11122333333333 33444444 678899999988755 11 1 2345678999999
Q ss_pred CCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEE-EECCCCceeEeecCCC
Q 009188 410 RDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYI-WHRASCDLIGALPGHS 488 (540)
Q Consensus 410 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~h~ 488 (540)
+.|+.++++-.+|+|.+.|.+++ +.+..+.........+. .|..+.++....|.++.+ |..-.|....+.+...
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqla----apsdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLA----APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhc----CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 99999999999999999999988 66665554443322221 466778888888999999 9877776655554332
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 489 GAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 489 ~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.+..-+ -.-|+ -++++.....+.+|.
T Consensus 961 epahfl--qsvgp-SLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 961 EPAHFL--QSVGP-SLVTAQNGNILGVYA 986 (1034)
T ss_pred cchhhh--hccCc-eeEEeccCcEEEEEe
Confidence 221111 11243 455665555666663
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=1e-07 Score=81.84 Aligned_cols=190 Identities=11% Similarity=0.087 Sum_probs=132.6
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL 321 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 321 (540)
..+||.||.-|...+|...+... .......|...|+-+.=.. ..--+..++.|.++++.+++-+..........-.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccce
Confidence 44899999999999999875532 2233344554443222111 22345667888888988886554433332222348
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEecCC--ceEEE-eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-----
Q 009188 322 VSCGWHPDRKWIFSGANDKSICMWELGG--KELEC-WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV----- 393 (540)
Q Consensus 322 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~----- 393 (540)
.++++++|++++++.+....|..|.+.. ..+.. ........--+..|+.....++++..||++.+||++...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 8999999999999999999999999853 22222 233333345677899999999999999999999988743
Q ss_pred --EEEeecCCceeEEEEcCCC--CEEEEEecCCeEEEEEecCCce
Q 009188 394 --ERYIEEDQTITSFSLSRDN--KFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 394 --~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
.....|.+.+..+.|++.| .+|+..-.-+.+.+.|+++...
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 2334588999999999976 4566666677899999988633
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=4.2e-08 Score=84.19 Aligned_cols=220 Identities=10% Similarity=0.068 Sum_probs=141.3
Q ss_pred CCCcEEEEECCCCe--EEEEeecCCCcEEEEEEec-----CCCEEEEEeCCCcEEEEecCCceEEEee-ccccceEEEEE
Q 009188 296 VEEAVRRWDVSSGN--CLHVYEKAGLGLVSCGWHP-----DRKWIFSGANDKSICMWELGGKELECWK-GQRTLKISDLE 367 (540)
Q Consensus 296 ~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~ 367 (540)
....+.+|++.+.. .+..+ ..+.|.| ...+|+.|+..|...+|...+.+..... ..+...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34457778776543 23332 2334444 4458999999999999999764433222 22211111110
Q ss_pred -EccCCCEEEEEecCCeEEEEECCCceEEEeecCC--ceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeE--eeCC
Q 009188 368 -VTSDGKQIITMCKESALLLLDREAKVERYIEEDQ--TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAK--YKGH 442 (540)
Q Consensus 368 -~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~ 442 (540)
+......+..++.|.++++.++.........|.. .+.+++++++++++++.+....|..|.+......+.. ....
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 1112234566677888888877766644444433 3889999999999999999999999999765433333 2233
Q ss_pred cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee-----EeecCCCCCeEEEEeCCCCCC-EEEEEeCCCcEEEe
Q 009188 443 KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI-----GALPGHSGAVNCVSWNPANPH-MLASASDDRTIRIW 516 (540)
Q Consensus 443 ~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~-~l~s~~~Dg~i~iw 516 (540)
....+...+ +.....+|+++.||++.|||++..... .+-+.|.+.+..+.|++.|.. +|+-.-.-+.+.+-
T Consensus 203 ~D~gF~~S~---s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 203 SDHGFYNSF---SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred CCCceeeee---ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 333333332 677889999999999999999874332 223458999999999986642 34444445678999
Q ss_pred cCCCCCccc
Q 009188 517 GLKDLNVKR 525 (540)
Q Consensus 517 ~~~~~~~~~ 525 (540)
|++++.-.+
T Consensus 280 D~R~~~~~q 288 (344)
T KOG4532|consen 280 DTRNYVNHQ 288 (344)
T ss_pred EcccCceee
Confidence 998876544
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=7e-07 Score=78.09 Aligned_cols=238 Identities=13% Similarity=0.094 Sum_probs=134.6
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec---CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE
Q 009188 236 FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS---GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH 312 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 312 (540)
.++.+++|+.||.-- |..|.|=....+=. ..+.+.. ...-.=+-++||||+..||.+...|+|+++|+.. ..+.
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~-si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFS-SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELF 78 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCch-heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeE
Confidence 466788998777654 56677765542211 1112222 2223357899999999999999999999999864 3333
Q ss_pred EeecC-------CCcEEEEEEecC------CCEEEEEeCCCcEEEEecCCce--------EEEeeccccceEEEEEEccC
Q 009188 313 VYEKA-------GLGLVSCGWHPD------RKWIFSGANDKSICMWELGGKE--------LECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 313 ~~~~~-------~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~i~~~~~ 371 (540)
.+... ...|..+.|.+. ...|++-..+|.++-|-+..+. ...+.......|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 43322 245667777652 2256777788887777653211 11223344568999999999
Q ss_pred CCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEE--EEEecCCe------EEEEEecCCceeeeEeeCCc
Q 009188 372 GKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFL--LVNLLNQE------IHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l--~~~~~dg~------i~i~d~~~~~~~~~~~~~~~ 443 (540)
.+.|++|+.... . ..........+++-.+-.+..+. ++...++. ..+|.+-+. ..........
T Consensus 159 h~LLlVgG~~~~------~--~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~ 229 (282)
T PF15492_consen 159 HRLLLVGGCEQN------Q--DGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQ 229 (282)
T ss_pred CCEEEEeccCCC------C--CccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce-eeeeccccCC
Confidence 999888774332 0 00011112233333332222111 11111211 122222111 1111111223
Q ss_pred CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC
Q 009188 444 RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS 488 (540)
Q Consensus 444 ~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 488 (540)
..++.+ ..+|+|.+||+...+|.|.+|++.+-++.....-+.
T Consensus 230 d~i~km---SlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 230 DGIFKM---SLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CceEEE---EECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 333333 339999999999999999999999888777665443
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.4e-07 Score=89.10 Aligned_cols=258 Identities=14% Similarity=0.194 Sum_probs=147.7
Q ss_pred cEEEEEEecCCCeEEEEeC-----------CCcEEEEEeecCCceEEEEEecC---CCCCeEEEEECcCCCeEEEeeCCC
Q 009188 233 EVWFLQFSHNGKYLASSSN-----------DRSAIIWEVDLNGGVTLKHKLSG---HQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~-----------dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
.|.-+.|||+.+||+|-+. ...+.|||+.++. ..+.+.. ....-.-..||.|++++|.-.. .
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~---lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~ 326 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL---LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-N 326 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc---hhcceeccCCCccccceEEeccCCceeEEecc-c
Confidence 6888999999999999653 1569999999873 3333333 2222234689999999998765 4
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC---------------------------------------
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND--------------------------------------- 339 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------------------------- 339 (540)
+|.||+..+-.++..-...-..|....|+|.++.||-=...
T Consensus 327 sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 327 SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 68899876533322211222345555566655544421110
Q ss_pred ---------------C---cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec---CCeEEEEECCCce----E
Q 009188 340 ---------------K---SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK---ESALLLLDREAKV----E 394 (540)
Q Consensus 340 ---------------g---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~~d~~~~~----~ 394 (540)
| .+-|+.++.+.+......-...|...+|-|.|..+++.+. ..++.+|.+.+.. .
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 0 1112222111111111112235677889999998887654 3567888777422 1
Q ss_pred EEeecCCceeEEEEcCCCCEEEEEe---cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEE
Q 009188 395 RYIEEDQTITSFSLSRDNKFLLVNL---LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVY 471 (540)
Q Consensus 395 ~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~ 471 (540)
...-.....+.+.|+|.|++++++. ..|.+.++|+.-..........|. ...-..|.|.|+|+++++.-+..
T Consensus 487 Vk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~----~at~veWDPtGRYvvT~ss~wrh- 561 (698)
T KOG2314|consen 487 VKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF----AATEVEWDPTGRYVVTSSSSWRH- 561 (698)
T ss_pred hhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc----ccccceECCCCCEEEEeeehhhh-
Confidence 1112235678899999999998864 478899999874211111111121 23334569999999999864432
Q ss_pred EEECCCCceeEeecCC------CCCeEEEEeCCCCC
Q 009188 472 IWHRASCDLIGALPGH------SGAVNCVSWNPANP 501 (540)
Q Consensus 472 iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~ 501 (540)
.+.+|-.+.++.|. -+....+.|-|.-+
T Consensus 562 --k~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPp 595 (698)
T KOG2314|consen 562 --KVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPP 595 (698)
T ss_pred --ccccceEEEEeecHHHHHHHHHHHHhhccCCCCC
Confidence 12344444444431 12234456766544
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.95 E-value=3.9e-07 Score=82.99 Aligned_cols=220 Identities=17% Similarity=0.104 Sum_probs=136.3
Q ss_pred CCcEEEEECCCCeEEEEeecCC--CcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 297 EEAVRRWDVSSGNCLHVYEKAG--LGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
+|.|..||..+|+.+....... ....+. ..+++..+++++.++.|..||..+++..-...... .+... ...++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~-~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGA-PVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSG-EEEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccce-eeecccc
Confidence 6889999999999998886421 122211 23356688888999999999997776543332211 11110 1334666
Q ss_pred EEEEecCCeEEEEECCCceEEEe-ec-C----CceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCe-e
Q 009188 375 IITMCKESALLLLDREAKVERYI-EE-D----QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSR-F 447 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~~~~~-~~-~----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~ 447 (540)
+++++.++.++.+|..++..... .. . ...........+..++++..++.|..+|.+++ +.+..+....... .
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCc
Confidence 77777888999999887764333 11 1 11222333334888899998999999999988 6666555433221 1
Q ss_pred E------EEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 448 V------IRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 448 ~------i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
. ........++ .++.++.+|.+..+|..+++.+.... ...+..+ ..+.+. .++.++.++.|..||+++|
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTT
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCC
Confidence 0 0111112234 67777777764444999999764333 2334432 224454 6777779999999999999
Q ss_pred Cccc
Q 009188 522 NVKR 525 (540)
Q Consensus 522 ~~~~ 525 (540)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8653
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=6e-07 Score=88.22 Aligned_cols=261 Identities=11% Similarity=0.060 Sum_probs=153.6
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEE-EEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCc
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSC-VSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 320 (540)
++..++.++.+|.+..+|..++. ......... .+.+ ... .+..++.++.++.+..+|..+|+.+..+......
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~---~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGE---VAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCC---CcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 35567778888999999987663 222222221 1211 111 2446667778999999999999998877543211
Q ss_pred EEE-EEEec--CCCEEEEEeCCCcEEEEecCCceEEEeecccc----c---eEEEEEEcc--CCCEEEEEecCCeEEEEE
Q 009188 321 LVS-CGWHP--DRKWIFSGANDKSICMWELGGKELECWKGQRT----L---KISDLEVTS--DGKQIITMCKESALLLLD 388 (540)
Q Consensus 321 v~~-~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~---~v~~i~~~~--~~~~l~~~~~d~~i~~~d 388 (540)
+.. ..-+| .+..++.++.+|.+..+|..+++..-...... . ....+..+| .+..+++++.+|.+..+|
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 100 00111 23457778888999999987665432211000 0 001111111 355677778899999999
Q ss_pred CCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC
Q 009188 389 REAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS 468 (540)
Q Consensus 389 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg 468 (540)
..++.............+. ..+..+++++.+|.+..+|..++ ..+-........... .. ...+..++.++.||
T Consensus 273 ~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~--sp--~v~~g~l~v~~~~G 345 (394)
T PRK11138 273 LRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLT--AP--VLYNGYLVVGDSEG 345 (394)
T ss_pred CCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCccc--CC--EEECCEEEEEeCCC
Confidence 9887644433222222222 24667888888999999999876 333222111111000 00 01245678899999
Q ss_pred cEEEEECCCCceeEeecCCCCCeEE-EEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 469 QVYIWHRASCDLIGALPGHSGAVNC-VSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 469 ~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.|++.|..+|+.+...+-....+.+ ..+ .+. .|+.++.||.|+.++.
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVV--ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEE--ECC-EEEEEeCCceEEEEeC
Confidence 9999999999998776543333332 222 132 6888899999988764
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3.8e-09 Score=93.66 Aligned_cols=170 Identities=16% Similarity=0.323 Sum_probs=131.8
Q ss_pred EEEec--CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce------EE
Q 009188 324 CGWHP--DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV------ER 395 (540)
Q Consensus 324 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~------~~ 395 (540)
++|+- .+-. ++.+.+-.|-+-|+.++....+. ..+.|.++.|...++.+..|+.+|.|..+|++.+. ..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35553 2334 45556667888999887665555 33468888888889999999999999999998762 66
Q ss_pred EeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCC--ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEE
Q 009188 396 YIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGE--VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYI 472 (540)
Q Consensus 396 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~i 472 (540)
.+.|+..|+++..-. ++++|++.+.+|.|.+||++.. ..-+..+.+|......+.+.. .+....+++++.|...+|
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc-ccccceEEEccCeeEEEE
Confidence 778999999999887 8899999999999999999865 123888999987655554443 566778888999999999
Q ss_pred EECCCCceeEeecCCC----CCeEEEEeC
Q 009188 473 WHRASCDLIGALPGHS----GAVNCVSWN 497 (540)
Q Consensus 473 wd~~~~~~~~~~~~h~----~~v~~l~~~ 497 (540)
|.+..|.++.+++-.. ..+.+++|.
T Consensus 373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EecccCceeeccCCCCccccccccceehh
Confidence 9999999998887432 245556654
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=7.1e-06 Score=74.99 Aligned_cols=214 Identities=12% Similarity=0.129 Sum_probs=137.4
Q ss_pred EEEEec-CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEEC-cCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 009188 236 FLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS-SDDQQLLTCGVEEAVRRWDVSSGNCLHV 313 (540)
Q Consensus 236 ~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 313 (540)
+++|.+ ++.++++--..+.|..|+...+ ......... ...+++. +++. ++.+...+ +.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~--~~~~~~~~~----~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG--EVEVIDLPG----PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEEESSS----EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC--eEEEEecCC----CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence 578888 6666677667888998887644 222222222 6777777 5654 44455444 56669999876554
Q ss_pred eec-----CCCcEEEEEEecCCCEEEEEeCC--------CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEE-EEe
Q 009188 314 YEK-----AGLGLVSCGWHPDRKWIFSGAND--------KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQII-TMC 379 (540)
Q Consensus 314 ~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~ 379 (540)
... .......+++.++|+..++.... |.|..++.. ++....... ....+.++|+|+++.|+ +-+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeeccc
Confidence 443 34568899999999977765543 457777777 444433332 34678999999999776 556
Q ss_pred cCCeEEEEECCC--c-e---EEEee-cC--CceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEE
Q 009188 380 KESALLLLDREA--K-V---ERYIE-ED--QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 380 ~d~~i~~~d~~~--~-~---~~~~~-~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 450 (540)
..+.|..++... . . ..... .. +..-.++++.+|++.++....+.|.++|.+. +.+..+...... ...
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G--~~~~~i~~p~~~--~t~ 229 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG--KLLREIELPVPR--PTN 229 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS--CEEEEEE-SSSS--EEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc--cEEEEEcCCCCC--EEE
Confidence 778899998753 2 1 11222 12 2478899999999999888899999999874 455555544332 344
Q ss_pred eeeccCCCcEEEE
Q 009188 451 SCFGGLEQAFIAS 463 (540)
Q Consensus 451 ~~~~~~~~~~l~s 463 (540)
++|..++.+.|+.
T Consensus 230 ~~fgg~~~~~L~v 242 (246)
T PF08450_consen 230 CAFGGPDGKTLYV 242 (246)
T ss_dssp EEEESTTSSEEEE
T ss_pred EEEECCCCCEEEE
Confidence 5555666555543
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=2.1e-08 Score=91.00 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=113.5
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCc-eEEEEEecCCCCCeEEEEECcCCCeEEEe---eCCCcEEEEECCCC
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG-VTLKHKLSGHQKPVSCVSWSSDDQQLLTC---GVEEAVRRWDVSSG 308 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~---~~dg~i~iwd~~~~ 308 (540)
.+..+..+|++++||.+..+....++++....+ .++..... -...-+++.|..+......+ +....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445566788899999988888877888775543 23332222 22233445555555444444 44556777776665
Q ss_pred eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC-CceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEE
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG-GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLL 387 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~ 387 (540)
.+...+ +|-+.++.++|+||+++|+++..|..|++-... ...+..+.-+|...|..+++.++. .|++++.|+++++|
T Consensus 143 ~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLW 220 (390)
T ss_pred Ccchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEE
Confidence 554444 888899999999999999999999999998874 455566667788889999988754 48999999999999
Q ss_pred ECCCce
Q 009188 388 DREAKV 393 (540)
Q Consensus 388 d~~~~~ 393 (540)
|+.++.
T Consensus 221 d~~sgk 226 (390)
T KOG3914|consen 221 DITSGK 226 (390)
T ss_pred ecccCC
Confidence 998865
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.1e-07 Score=84.62 Aligned_cols=246 Identities=13% Similarity=0.157 Sum_probs=148.1
Q ss_pred EEecCCCCCeEEEEECcCCC-eEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEec
Q 009188 270 HKLSGHQKPVSCVSWSSDDQ-QLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWEL 347 (540)
Q Consensus 270 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~ 347 (540)
..+.+|...|..++|+|..+ ++..++.+..|+|.|+++..++..+..+ ..+++++|.-|. ++|++|..+|.|.+||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 35667888999999999877 7888999999999999999999998777 689999999854 57888999999999999
Q ss_pred CCceE--EEeec-cccceEEEEEEcc------CCCEEEEEecCCeEEEEECCCce-----EEEeecCCceeEEEEcCCCC
Q 009188 348 GGKEL--ECWKG-QRTLKISDLEVTS------DGKQIITMCKESALLLLDREAKV-----ERYIEEDQTITSFSLSRDNK 413 (540)
Q Consensus 348 ~~~~~--~~~~~-~~~~~v~~i~~~~------~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~i~~~~~s~~~~ 413 (540)
+..+- ..... ....+|..++.-+ .|..++....+ +..|+..... ....+..+...++...+..+
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence 75332 11111 1222444443322 23333333322 3344433321 23334456667777777666
Q ss_pred EEEEEecCC-------eEEE-EEecCCceeeeEeeCC----cCCeeEEEeeeccCCCcEE-EEeeCCCcEEEEECCCCce
Q 009188 414 FLLVNLLNQ-------EIHL-WNIEGEVKLVAKYKGH----KRSRFVIRSCFGGLEQAFI-ASGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 414 ~l~~~~~dg-------~i~i-~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~ 480 (540)
.+++....+ .+-. -|-.++......-.++ ......-...+..++.+++ ..|+..+.+.+||..+++.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 666654431 0111 1111121111111111 1111111112223444554 4556667899999999999
Q ss_pred eEeecCCCCCeEEEEeCCC-CCCEEEEEeCCCcEEEecCCC
Q 009188 481 IGALPGHSGAVNCVSWNPA-NPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 481 ~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
+.++. -+.+|.+++.... ++.+|+.-. |..++||..++
T Consensus 424 vQ~l~-~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 424 VQTLA-LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eeecc-cCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 99988 4588888876543 433565554 45788887653
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.86 E-value=1.8e-06 Score=84.95 Aligned_cols=265 Identities=8% Similarity=-0.025 Sum_probs=155.8
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC--C--------Ce-EEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ--K--------PV-SCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~--~--------~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
+..+++++.+|.+.-+|..++. ......... . .+ ..+.. .+..++.++.+|.+..+|..+|+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGK---EIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCc---EeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCc
Confidence 5567777777888888876552 222221111 0 00 00111 3556777888999999999999998
Q ss_pred EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceE-----EEEEEccCCCEEEEEecCCeEEE
Q 009188 312 HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKI-----SDLEVTSDGKQIITMCKESALLL 386 (540)
Q Consensus 312 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~~~d~~i~~ 386 (540)
...........+... .+..+++++.+|.|..+|..+++..-......... .+-.. .+..++.++.++.+..
T Consensus 144 W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 144 WQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEE
Confidence 877654321111111 24567778889999999998776653332211000 00011 1345777788899998
Q ss_pred EECCCceEEEeec-CC--------ceeEEEEcC--CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeecc
Q 009188 387 LDREAKVERYIEE-DQ--------TITSFSLSR--DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455 (540)
Q Consensus 387 ~d~~~~~~~~~~~-~~--------~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 455 (540)
+|..++....... .. ....+..+| .+..+++++.+|.+..+|..++. .+-+....... .. .
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~----~~---~ 291 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-IVWKREYGSVN----DF---A 291 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC-EEEeecCCCcc----Cc---E
Confidence 8888765222110 00 011111222 35567777789999999998773 33222211100 01 1
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCceeEeecCCC-CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc
Q 009188 456 LEQAFIASGSEDSQVYIWHRASCDLIGALPGHS-GAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 456 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
..+..++.++.+|.++.+|..+|+.+-....-. ....+.... +. .++.++.||.|.+.|..+|+...+.
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 245667778899999999999998765433211 112222221 32 6788899999999999999887653
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=6.3e-08 Score=87.97 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=113.2
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEECCCce-----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc-eee
Q 009188 363 ISDLEVTSDGKQIITMCKESALLLLDREAKV-----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV-KLV 436 (540)
Q Consensus 363 v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~ 436 (540)
...+..++.++.++++..+....+++..... ..........+++.+..+.....++..-|.++-+|+-... ...
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 4445667788888888888877666655433 2222334455667777777777777777766666654321 233
Q ss_pred eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee-cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEE
Q 009188 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL-PGHSGAVNCVSWNPANPHMLASASDDRTIRI 515 (540)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~i 515 (540)
...-+|-...+.+ .+++|+++|+++..|..|++-.......+..+ -||..-|..++.-++. .|+|+|.|++|++
T Consensus 145 ~~~lGhvSml~dV---avS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 145 EPILGHVSMLLDV---AVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRL 219 (390)
T ss_pred chhhhhhhhhhee---eecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEE
Confidence 3444665554443 34899999999999999999888776666555 4799999999998754 6999999999999
Q ss_pred ecCCCCCccc
Q 009188 516 WGLKDLNVKR 525 (540)
Q Consensus 516 w~~~~~~~~~ 525 (540)
||+.+|+...
T Consensus 220 Wd~~sgk~L~ 229 (390)
T KOG3914|consen 220 WDITSGKLLD 229 (390)
T ss_pred EecccCCccc
Confidence 9999998874
No 303
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=5.1e-08 Score=94.99 Aligned_cols=244 Identities=16% Similarity=0.268 Sum_probs=166.0
Q ss_pred EEEEEEecCC--CeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCCC-e
Q 009188 234 VWFLQFSHNG--KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSG-N 309 (540)
Q Consensus 234 V~~~~~sp~g--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-~ 309 (540)
|-.+.|+|.. .+-++......-.+|++...........+.+|...|+.+.|+|.. ..+++++.|-.+..||+++. .
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 4556676632 344444444566789887665556666788999999999999864 57899999999999999885 4
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC-CceEEEeeccccceEEEEEEccC-CCEEEEEecCCeEEEE
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG-GKELECWKGQRTLKISDLEVTSD-GKQIITMCKESALLLL 387 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~~ 387 (540)
.+..+..-......++|+.....+.+.+....|.+||++ +.........+...+..+.|..- ...+.+.+.|++|+.|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 455555556677889999866667777777889999996 44555555667777888877643 3457788899999999
Q ss_pred ECCCce---EEEeecCCceeEEEEcCCCCEEEEE--e---------cCCeEEEEEecCCceeeeEeeCCcCCeeEEEee-
Q 009188 388 DREAKV---ERYIEEDQTITSFSLSRDNKFLLVN--L---------LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSC- 452 (540)
Q Consensus 388 d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~--~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~- 452 (540)
|..... ........+|..-++.|-|.-.++- - .++....|+..+...++..|.||...+.-..+-
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 987654 4444556666666666644322221 1 122233455555667889999998753221110
Q ss_pred ----ec--cCCCcEEEEeeCCCcEEEEECCC
Q 009188 453 ----FG--GLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 453 ----~~--~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
.+ ....-.|++=+.|..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 00 11233689999999999997653
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.84 E-value=4e-08 Score=83.93 Aligned_cols=165 Identities=12% Similarity=0.165 Sum_probs=104.6
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-----CCCc
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-----VEEA 299 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-----~dg~ 299 (540)
+.+..|+++=.+-+.+-.++.++++..||.+.+++.+.. ....+....-...-.+.+....++.+.+++ .-+.
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 334445554444445556778999999999999987631 122122211111112223333455555443 2234
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCce-EEEeeccccceEEEEEEcc-CCCEEE
Q 009188 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKE-LECWKGQRTLKISDLEVTS-DGKQII 376 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~ 376 (540)
.++|+++-.+....-......|.+++-+|. .+.+++|+.||.+.+||.+... .......|..++..+.|+| ++..|+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 666666543333222233345899999994 5567788899999999997653 3345566777899999997 468899
Q ss_pred EEecCCeEEEEECCC
Q 009188 377 TMCKESALLLLDREA 391 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~ 391 (540)
+++.||.+..||..+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999999876
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=5.2e-08 Score=85.30 Aligned_cols=240 Identities=16% Similarity=0.224 Sum_probs=158.0
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe-----EEEEeecCC------------CcEEEEEEecCC--CEEEEE
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN-----CLHVYEKAG------------LGLVSCGWHPDR--KWIFSG 336 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 336 (540)
...|+++.|...|.+|++|...|.|.++.-+... ....++.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754422 122344443 356777887643 467788
Q ss_pred eCCCcEEEEecCCceEE-------------------------------------------EeeccccceEEEEEEccCCC
Q 009188 337 ANDKSICMWELGGKELE-------------------------------------------CWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 337 ~~dg~i~iwd~~~~~~~-------------------------------------------~~~~~~~~~v~~i~~~~~~~ 373 (540)
+.|.+|++|.+..+.+. .....|...+.++.+..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999988533110 01124555678899998888
Q ss_pred EEEEEecCCeEEEEECCCce-----EEEeec-----CCceeEEEEcCC-CCEEEEEecCCeEEEEEecCCceee---eEe
Q 009188 374 QIITMCKESALLLLDREAKV-----ERYIEE-----DQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEGEVKLV---AKY 439 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~-----~~~~~~-----~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~---~~~ 439 (540)
.++++ .+-.|.+|++.-.. .....+ ..-|++..|+|. ...+...+..|.|++-|++...-+. +.+
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77764 56788899876543 111122 245789999995 4677788889999999998431111 111
Q ss_pred e----C-----CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-CceeEeecCCC------------CCe---EEE
Q 009188 440 K----G-----HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-CDLIGALPGHS------------GAV---NCV 494 (540)
Q Consensus 440 ~----~-----~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~------------~~v---~~l 494 (540)
. + ....+..+.-..++++|+++++-+. -+|+|||++. ..++.+++-|. ..| ..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1 1 1112223444455899999987665 4799999875 45667765442 233 346
Q ss_pred EeCCCCCCEEEEEeCCCcEEEecC
Q 009188 495 SWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 495 ~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.|+.+.. .+++|+.....-|+-.
T Consensus 344 sfSgd~~-~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 344 SFSGDDK-HVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecCCcc-cccccccccceeeecc
Confidence 7887775 6778887777666653
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.2e-08 Score=62.86 Aligned_cols=38 Identities=26% Similarity=0.667 Sum_probs=36.3
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWE 259 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd 259 (540)
++++.+.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=2.6e-06 Score=77.55 Aligned_cols=217 Identities=12% Similarity=0.071 Sum_probs=130.3
Q ss_pred CCcEEEEEeecCCceEEEEEecC--CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC
Q 009188 252 DRSAIIWEVDLNGGVTLKHKLSG--HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD 329 (540)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (540)
+|+|..||..++ +......- -.....+. ..+++..+++++.++.+..||..+|+.+..+..... +.... ..+
T Consensus 2 ~g~l~~~d~~tG---~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTG---KELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTT---EEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEE
T ss_pred CCEEEEEECCCC---CEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eec
Confidence 577888887655 23333321 11222211 223566778888999999999999999888875322 11111 224
Q ss_pred CCEEEEEeCCCcEEEEecCCceEEEe-eccc---cceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee--cCCc-
Q 009188 330 RKWIFSGANDKSICMWELGGKELECW-KGQR---TLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE--EDQT- 402 (540)
Q Consensus 330 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~---~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~- 402 (540)
+..+++++.++.|..+|..+++..-. .... ...........++..++++..++.+..+|..++...... ....
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 55777777888999999877666544 2211 111222333334888999999999999999987742222 1111
Q ss_pred ---------eeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEE
Q 009188 403 ---------ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW 473 (540)
Q Consensus 403 ---------i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iw 473 (540)
+..-....++ .+++++.++.+.-+|+.++... .... ... ..... ...+..++.++.++.|..|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~-w~~~--~~~---~~~~~-~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL-WSKP--ISG---IYSLP-SVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE-EEEC--SS----ECECE-ECCCTEEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE-EEec--CCC---ccCCc-eeeCCEEEEEeCCCEEEEE
Confidence 1122222244 7777777775444499888433 2222 111 11111 4566777777799999999
Q ss_pred ECCCCceeE
Q 009188 474 HRASCDLIG 482 (540)
Q Consensus 474 d~~~~~~~~ 482 (540)
|+.+|+.+-
T Consensus 228 d~~tG~~~W 236 (238)
T PF13360_consen 228 DLKTGKVVW 236 (238)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCCEEe
Confidence 999998764
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=7.2e-08 Score=82.40 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=135.0
Q ss_pred eEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE------------EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 009188 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL------------HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 346 (540)
++.+.++. ...|+++..++.+......++.+. +.+..+..+-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55555553 335556656665555544333332 22222322222222233466799999999999999
Q ss_pred cCCc-eEEEeeccccceEEEEEEccCCCEEEEEe-----cCCeEEEEECCCce--EEEeecCCceeEEEEcCCC-CEEEE
Q 009188 347 LGGK-ELECWKGQRTLKISDLEVTSDGKQIITMC-----KESALLLLDREAKV--ERYIEEDQTITSFSLSRDN-KFLLV 417 (540)
Q Consensus 347 ~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~-~~l~~ 417 (540)
.+.- ............-.+.++...++.+.++. .-+..+.|+.+... .........+++++-+|.. +.+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 8641 11111111111122233334444444332 23445666665544 2222233459999999965 56677
Q ss_pred EecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeE---------------
Q 009188 418 NLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIG--------------- 482 (540)
Q Consensus 418 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--------------- 482 (540)
|+.+|.+-+||.+....+...+..|+.....+. |...++..|+++++||.+..||..+ ..+.
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~--FHpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH--FHPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGD 274 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhhee--ccCCCchheeEecCCCcEEEEcCCC-ceEEecCccccccccccCC
Confidence 888999999999988777888888888766654 4456778899999999999999763 1111
Q ss_pred ---e-------ecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 483 ---A-------LPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 483 ---~-------~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
. +......|+++.. .|+ .|++|++-+.|++.+
T Consensus 275 ~v~s~i~i~~ll~~~~~SinsfDV--~g~-~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEITSLLPSRSLSINSFDV--LGP-CLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeeeccccccceeeeeeec--cCc-eEEeccccceEEEec
Confidence 1 0111123444443 354 788898888888764
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=8.2e-06 Score=70.24 Aligned_cols=263 Identities=14% Similarity=0.130 Sum_probs=142.3
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeE-EEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCc
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS-CVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG 320 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 320 (540)
-|++++.|...|.+++.+.+++.... .+..-. .|. .....+++..+..++.|+..+..|..+..++...+..+..
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w---~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~ 137 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIW---NFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT 137 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhhee---eeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce
Confidence 36789999999999999988774332 222111 111 2234568999999999999999999999999888766655
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE-eeccccceEEE--EEEccCCCEEEEEecCCeEEEEECCCceEEEe
Q 009188 321 LVSCGWHPDRKWIFSGANDKSICMWELGGKELEC-WKGQRTLKISD--LEVTSDGKQIITMCKESALLLLDREAKVERYI 397 (540)
Q Consensus 321 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~--i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 397 (540)
..+-+..|-...|+++...|.|.--..+...... +......++-+ ++. +..+..++-||.+.-+|.........
T Consensus 138 f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~~sG~qvwr~ 214 (354)
T KOG4649|consen 138 FVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFDESGRQVWRP 214 (354)
T ss_pred eccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEcCCCcEEEee
Confidence 5555667744456666666666555544332111 11111111111 111 33455566677776666444443333
Q ss_pred ecCCceeE-EEEc-CCCCEEEEEecCCeE--------EEEEecCCceeeeEeeCCcCCeeEEEeeeccC---CCcEEEEe
Q 009188 398 EEDQTITS-FSLS-RDNKFLLVNLLNQEI--------HLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL---EQAFIASG 464 (540)
Q Consensus 398 ~~~~~i~~-~~~s-~~~~~l~~~~~dg~i--------~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~ 464 (540)
...++|.. -+-+ |..+.+..+..+-.+ .+|..+.+ .....+-.. .+++.+.++ ..+++..+
T Consensus 215 ~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-~t~~vy~~p-----~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 215 ATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG-TTLHVYLSP-----KLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred cCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC-cEEEEEeCc-----ccceeccCCCCcchhhhhhh
Confidence 33343311 1111 333444443333222 23443332 111111100 011222222 24678889
Q ss_pred eCCCcEEEEECCCCceeEeecCCCCCeEEEE--------e-CC---CCCCEEEEEeCCCcEEEecCCCC
Q 009188 465 SEDSQVYIWHRASCDLIGALPGHSGAVNCVS--------W-NP---ANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 465 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--------~-~~---~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
+.||.+.|.-.. +.+.....|.+.+..+. | +| ++ .|+.|+.|..|+.||+.+.
T Consensus 289 s~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g--rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 289 SGDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDG--RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cCCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEcc--EEEEEEccCeEEEEecccc
Confidence 999998887433 22344444444333222 1 22 23 5788899999999999875
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.81 E-value=3.6e-06 Score=87.27 Aligned_cols=197 Identities=15% Similarity=0.218 Sum_probs=139.5
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC----C
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV----S 306 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~----~ 306 (540)
.+.|.++.|..++.-++.+..+|.|.+-|..+. .......-.++|.+++|+||+..++..+..+++.+-+- -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 368999999999999999999999999977643 22223345678999999999999999988887766432 1
Q ss_pred C-------------------CeEEEEeecC---------------------CCcEEEEEEecCCCEEEEEe----CC-Cc
Q 009188 307 S-------------------GNCLHVYEKA---------------------GLGLVSCGWHPDRKWIFSGA----ND-KS 341 (540)
Q Consensus 307 ~-------------------~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~----~d-g~ 341 (540)
. |+....+.+. .+.=+++.|--||.++++.. .+ ..
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 1 1111111110 11223589999999998732 23 68
Q ss_pred EEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe---cCCeEEEEECCCceEE-----EeecCCceeEEEEcCCCC
Q 009188 342 ICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC---KESALLLLDREAKVER-----YIEEDQTITSFSLSRDNK 413 (540)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~-----~~~~~~~i~~~~~s~~~~ 413 (540)
|++||-+ +.+..........-.+++|-|.|..+++.. .++.|.++..++-... ......++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 555444444445667899999999998765 5567999988775522 223344589999999999
Q ss_pred EEEE---EecCCeEEEEEecCC
Q 009188 414 FLLV---NLLNQEIHLWNIEGE 432 (540)
Q Consensus 414 ~l~~---~~~dg~i~i~d~~~~ 432 (540)
.|++ ......|++|-+.+.
T Consensus 303 iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ceeeeecccccceEEEEEecCe
Confidence 9998 455556999998764
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2.4e-08 Score=88.69 Aligned_cols=153 Identities=12% Similarity=0.158 Sum_probs=115.4
Q ss_pred EEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC----ceeeeEeeCCcCCeeEEEe
Q 009188 376 ITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE----VKLVAKYKGHKRSRFVIRS 451 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~i~~ 451 (540)
++.+.+..+.+.|..++....+...+.|.++.|...++.++.|..+|.|..+|++.. ..+...+ -|...++.+..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence 455666778888999988777778899999999999999999999999999999865 2222222 23344333333
Q ss_pred eeccCCCcEEEEeeCCCcEEEEECCCCce---eEeecCCCCCeEEE--EeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 452 CFGGLEQAFIASGSEDSQVYIWHRASCDL---IGALPGHSGAVNCV--SWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l--~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
. ..++.+|.+.+.+|+|.+||.+--++ +.++.||...-.-+ ...+.. ..++++|+|...|||.+++|+++..
T Consensus 307 L--q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 307 L--QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred h--ccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCceeec
Confidence 2 23678999999999999999877666 88888886543332 234545 3899999999999999999999887
Q ss_pred ccCCCc
Q 009188 527 DCHSNG 532 (540)
Q Consensus 527 ~~~~~~ 532 (540)
...+..
T Consensus 384 ipf~~s 389 (425)
T KOG2695|consen 384 IPFPYS 389 (425)
T ss_pred cCCCCc
Confidence 655543
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=3.9e-06 Score=75.88 Aligned_cols=192 Identities=16% Similarity=0.159 Sum_probs=135.6
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeC-----CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee--
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSN-----DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-- 295 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-- 295 (540)
.-+.|.|| -+|||||++|++.-. .|.|-|||.. ..+..+..+..|.-....+.+.|||+.|+.+.
T Consensus 48 ~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 48 PGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred CCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 33445555 479999999998643 4889999987 45677888888888888999999998887762
Q ss_pred ----------------CCCcEEEEECCCCeEEEEee----cCCCcEEEEEEecCCCEEEEEeCCC-------cEEEEecC
Q 009188 296 ----------------VEEAVRRWDVSSGNCLHVYE----KAGLGLVSCGWHPDRKWIFSGANDK-------SICMWELG 348 (540)
Q Consensus 296 ----------------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~ 348 (540)
.+-++...|..+|+.+.... .|...|..+++.++|..++..-..| -|.+++..
T Consensus 120 I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 120 IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence 12356667888898877643 3677899999999997776655444 24445443
Q ss_pred CceEEEee------ccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecC
Q 009188 349 GKELECWK------GQRTLKISDLEVTSDGKQIITMC-KESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 349 ~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
.. +.... ..-...+-+|++++++..+++.+ ..+.+.+||..+........-..+..++..+++ ++++ +..
T Consensus 200 ~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~s-sG~ 276 (305)
T PF07433_consen 200 GA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVS-SGQ 276 (305)
T ss_pred Cc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEe-CCC
Confidence 31 21111 12235799999999998886655 678899999999886666666677778777777 4444 434
Q ss_pred CeEE
Q 009188 422 QEIH 425 (540)
Q Consensus 422 g~i~ 425 (540)
|.+.
T Consensus 277 G~~~ 280 (305)
T PF07433_consen 277 GQLI 280 (305)
T ss_pred ccEE
Confidence 5433
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.78 E-value=6e-06 Score=85.68 Aligned_cols=238 Identities=13% Similarity=0.192 Sum_probs=151.1
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC-----C
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG-----G 349 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~ 349 (540)
..+.|.++.|..++..++.+..+|.|.+-|.++.... ....-...|.+++|+||+..++..+..+++.+-+-. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 3468999999999999999999999999988776532 333446789999999999999998888887665431 0
Q ss_pred ceE-------------------EEeec-----------------c---ccceEEEEEEccCCCEEEEEe-----cCCeEE
Q 009188 350 KEL-------------------ECWKG-----------------Q---RTLKISDLEVTSDGKQIITMC-----KESALL 385 (540)
Q Consensus 350 ~~~-------------------~~~~~-----------------~---~~~~v~~i~~~~~~~~l~~~~-----~d~~i~ 385 (540)
..+ ..+.+ . ....-+.++|.-||.++++.. ....++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 111 00100 0 011223589999999998743 337899
Q ss_pred EEECCCce-EEEeecCCceeEEEEcCCCCEEEEEe---cCCeEEEEEecCCcee--eeEeeCCcCCeeEEEeeeccCCCc
Q 009188 386 LLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNL---LNQEIHLWNIEGEVKL--VAKYKGHKRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 386 ~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 459 (540)
+||..... .......+.-.+++|-|.|..+++-. .++.|.+|.-++...- ...+...... +.-..|+.++.
T Consensus 226 V~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~---ve~L~Wns~sd 302 (1265)
T KOG1920|consen 226 VYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE---VEELAWNSNSD 302 (1265)
T ss_pred EecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccc---hheeeecCCCC
Confidence 99988433 22223345557899999999988854 3567888886543111 1112222222 22333477888
Q ss_pred EEEE---eeCCCcEEEEECCCCce--eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 460 FIAS---GSEDSQVYIWHRASCDL--IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 460 ~l~s---~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.|++ ......|++|-+.+-.- -+.+.-..... +.|+|..++.+..-..+|.+.++++
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 8887 55555699998876432 23333222222 7788866555555556666555443
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.4e-07 Score=91.76 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=86.9
Q ss_pred EEEEEecCCCeEEEEeC----CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 235 WFLQFSHNGKYLASSSN----DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 235 ~~~~~sp~g~~l~tg~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
+-..|+|...++|.++. .|+|.||- +++. +...-+..-| +++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGE-Pqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGE-PQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCC-CCccccccee---hhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 44578999998888753 48899984 3332 2222222333 56799999988899998999999999888877
Q ss_pred EEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC
Q 009188 311 LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG 348 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 348 (540)
-.....|+.+|..+.|+++|+.++++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 77777899999999999999999999999999999875
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.74 E-value=2.6e-08 Score=61.40 Aligned_cols=39 Identities=38% Similarity=0.819 Sum_probs=36.2
Q ss_pred CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 478 CDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 478 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
|+++.++.+|.+.|++++|+|++. +|+|++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 467889999999999999999985 999999999999997
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=4.6e-06 Score=83.35 Aligned_cols=205 Identities=14% Similarity=0.128 Sum_probs=135.3
Q ss_pred EECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCc-EEEEEEecCCCEEEEEeCCC-----cEEEEecCC----c--
Q 009188 283 SWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG-LVSCGWHPDRKWIFSGANDK-----SICMWELGG----K-- 350 (540)
Q Consensus 283 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~----~-- 350 (540)
+|++.+..++.|+.+|.|.+.+ ++-+.++.++.+... |..+....+.++|++.+.|+ .|++|+++. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 5678889999999999988887 345556778777766 44444333446777777665 489999942 1
Q ss_pred eEE---Eee----ccccceEEEEEEccCCCEEEEEecCCeEEEEECC------CceEEEeecCCceeEEEEcCCCCEEEE
Q 009188 351 ELE---CWK----GQRTLKISDLEVTSDGKQIITMCKESALLLLDRE------AKVERYIEEDQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 351 ~~~---~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~ 417 (540)
.+. ... .....++.+++++.+-+.+++|-.+|.|..+.-+ .+.........+|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 111 111 1234578899999999999999999999988532 222334456789999999999987444
Q ss_pred EecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec-CCCCCeE
Q 009188 418 NLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP-GHSGAVN 492 (540)
Q Consensus 418 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~ 492 (540)
......|.+|.+.+.......+..+.....+ ..+++....+++++ +..+++||.....+-..+. ||.....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnC---ss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNC---SSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCcccee---eecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 4456679999998664233335555544333 22233333233333 3469999988777766776 6654433
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.72 E-value=1.5e-05 Score=76.91 Aligned_cols=264 Identities=14% Similarity=0.148 Sum_probs=143.0
Q ss_pred ecCCCeEEEEe---------CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 240 SHNGKYLASSS---------NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 240 sp~g~~l~tg~---------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
|||+++++... ..+.+.|||+.++ ....+......+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~----~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG----EITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT----EEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC----ceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 68888777642 2467888888764 2223333356788999999999999875 67899999888754
Q ss_pred EEEeecC-----------------CCcEEEEEEecCCCEEEEEeCCC-cE------------------------------
Q 009188 311 LHVYEKA-----------------GLGLVSCGWHPDRKWIFSGANDK-SI------------------------------ 342 (540)
Q Consensus 311 ~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~dg-~i------------------------------ 342 (540)
.+.-... -..-..+.|+||+++|+....|- .|
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 4322111 11234678999999887654331 22
Q ss_pred -----EEEecCCceEEEee-----ccccceEEEEEEccCCCEEEEEe--cC---CeEEEEECCCce---EEEeecCCce-
Q 009188 343 -----CMWELGGKELECWK-----GQRTLKISDLEVTSDGKQIITMC--KE---SALLLLDREAKV---ERYIEEDQTI- 403 (540)
Q Consensus 343 -----~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~l~~~~--~d---~~i~~~d~~~~~---~~~~~~~~~i- 403 (540)
.++|+.+++..... ......+..+.|.+++..++... .+ ..+.++|..++. .........+
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 22333332221111 12234577888999888444433 22 235667776543 1112222222
Q ss_pred --eEEEEc-CCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc-EEEEeeCCC----cEEEEE
Q 009188 404 --TSFSLS-RDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA-FIASGSEDS----QVYIWH 474 (540)
Q Consensus 404 --~~~~~s-~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~s~dg----~i~iwd 474 (540)
....+. +++ .++.....+|.-+||-+.........+....-.+. ....++++++ +.+++..++ .|+.-+
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~--~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVT--SILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EE--EEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeec--ccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 355554 555 55555666776555555443333344443333332 2333355544 444555432 566667
Q ss_pred CCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCC
Q 009188 475 RASCDLIGALPGHSGAVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 475 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 510 (540)
+..+..+..+....+.-..+.|+|+++.++.+++.-
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 773444555554443337999999998777676653
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.4e-06 Score=85.28 Aligned_cols=204 Identities=14% Similarity=0.243 Sum_probs=140.0
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC-eEEEEECcCCCeEEEeeCCC-----cEEEEECC
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP-VSCVSWSSDDQQLLTCGVEE-----AVRRWDVS 306 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~ 306 (540)
.|+| |++.+..++.|+.+|.|.+.+-. ....+.+..+... |..+-...+..+|++.+.|+ .++||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4444 56788899999999998887532 3455667777776 44444444447888877665 48999986
Q ss_pred C------CeEE---EEee----cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC----CceEEEeeccccceEEEEEEc
Q 009188 307 S------GNCL---HVYE----KAGLGLVSCGWHPDRKWIFSGANDKSICMWELG----GKELECWKGQRTLKISDLEVT 369 (540)
Q Consensus 307 ~------~~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~i~~~ 369 (540)
. ..++ +.+. ....++.+++.+.+-+.+|+|-.+|.|..+.-+ .+...........+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 4 2334 2222 235688999999999999999999999988542 122233344445689999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCce--EE-EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee-CCcC
Q 009188 370 SDGKQIITMCKESALLLLDREAKV--ER-YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK-GHKR 444 (540)
Q Consensus 370 ~~~~~l~~~~~d~~i~~~d~~~~~--~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 444 (540)
.++..++.+.....|.+|.+.++. .. ...++.+.+|.++++....+++++ +..+.+|+.... .+...|. ++..
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~-~~cfaf~~g~kk 257 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR-GPCFAFEVGEKK 257 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc-ceeeeecCCCeE
Confidence 999886666666778888887655 22 445677888888887666455555 567999998866 4444444 5543
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.70 E-value=2.2e-05 Score=71.16 Aligned_cols=225 Identities=10% Similarity=0.087 Sum_probs=136.9
Q ss_pred eEEEEECc-CCCeEEEeeCCCc-EEEEECCCCeEEEEeecCCCcE--EEEEEecCCCEEEEEeC-----CCcEEEEecC-
Q 009188 279 VSCVSWSS-DDQQLLTCGVEEA-VRRWDVSSGNCLHVYEKAGLGL--VSCGWHPDRKWIFSGAN-----DKSICMWELG- 348 (540)
Q Consensus 279 v~~l~~s~-~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~- 348 (540)
...++.+| .+..++.+-.-|+ ..+||..+++....+......- -.-+|++||++|++.-. .|.|-+||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34578888 5566677777665 7889999999888776543332 24579999999998754 4689999997
Q ss_pred CceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCC--CEEEEEecCCeEEE
Q 009188 349 GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDN--KFLLVNLLNQEIHL 426 (540)
Q Consensus 349 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i 426 (540)
+.........+.-....+.+.|||+.|+++... |.-+|+. ..|-..+.+..+.+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG------------------------I~Thpd~GR~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGG------------------------IETHPDSGRAKLNLDTMQPSLVY 142 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC------------------------CccCcccCceecChhhcCCceEE
Confidence 544444455555567788899999888876421 1111211 11222233344444
Q ss_pred EEecCCceeeeEeeC-CcCCeeEEEeeeccCCCcEEEEeeCCCc-------EEEEECCCCceeEee-------cCCCCCe
Q 009188 427 WNIEGEVKLVAKYKG-HKRSRFVIRSCFGGLEQAFIASGSEDSQ-------VYIWHRASCDLIGAL-------PGHSGAV 491 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~-------~~h~~~v 491 (540)
.|..++ .++....- .......++...+..+|..++..-..|. |.+++.. +.+..+ ..-.+.|
T Consensus 143 ld~~sG-~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 143 LDARSG-ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred EecCCC-ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCce
Confidence 444444 33333221 1112223555555666665555544432 3333322 222222 1234679
Q ss_pred EEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCC
Q 009188 492 NCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHS 530 (540)
Q Consensus 492 ~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~ 530 (540)
-+|++++++..+.+|+-.-|.+.+||..++++......+
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP 258 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC
Confidence 999999998755567778889999999999988764443
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.3e-08 Score=100.93 Aligned_cols=220 Identities=16% Similarity=0.203 Sum_probs=140.1
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC--
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE-- 298 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-- 298 (540)
.+..+++..|+...+|++|+.+.+.|+.|+..|.|+++++.++. ......+|..+|+.+.-+.+|..+++.+.-.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~---~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS---MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc---ccccccccccccccccccCCcceeeeeccccCc
Confidence 35667888999999999999999999999999999999998773 3455789999999999999999888766443
Q ss_pred cEEEEECCC-CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe-eccccceEEEEEEccCCCEEE
Q 009188 299 AVRRWDVSS-GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW-KGQRTLKISDLEVTSDGKQII 376 (540)
Q Consensus 299 ~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~ 376 (540)
...+|++.+ +...++|.. -.++.|+.....-+.|+......+||+.++..... .....
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---------------- 1227 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV---------------- 1227 (1516)
T ss_pred hHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----------------
Confidence 477899854 455555543 34677877654455566656788999976543222 11100
Q ss_pred EEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccC
Q 009188 377 TMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL 456 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 456 (540)
.....-+...|+|+..+++- || .+||++.. ..+..|...... + .-.+.|
T Consensus 1228 ---------------------~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~-~aIh~FD~ft~~---~-~G~FHP 1276 (1516)
T KOG1832|consen 1228 ---------------------TSSYSNNLAHFSPCDTLILN---DG--VLWDVRIP-EAIHRFDQFTDY---G-GGGFHP 1276 (1516)
T ss_pred ---------------------hhhhhccccccCCCcceEee---Cc--eeeeeccH-HHHhhhhhheec---c-cccccC
Confidence 00011134556666655542 33 46777655 334433322211 1 112266
Q ss_pred CCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCC
Q 009188 457 EQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANP 501 (540)
Q Consensus 457 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 501 (540)
+|.-++.-++ |||+++.+.++..+.-. -..+.|+..|.
T Consensus 1277 ~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1277 SGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNSTGD 1314 (1516)
T ss_pred CCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccCcc
Confidence 7776666654 77777777666554322 23455666554
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.5e-07 Score=84.30 Aligned_cols=251 Identities=12% Similarity=0.107 Sum_probs=165.8
Q ss_pred CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC--C-eEEEEeecCCCcEEEEEEecCCCEEEEEeC-CCcEEEEecCC
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS--G-NCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DKSICMWELGG 349 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 349 (540)
.|.+.|+.+... ..+++.+++.||.++.|.-.. | +.+..+..|-..|.+++.+.++..+.+++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777765543 567999999999999997533 1 345556677788899999999999999777 99999999965
Q ss_pred ceEEEeecccc-ceEEEEEEccC-C--CEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEecC
Q 009188 350 KELECWKGQRT-LKISDLEVTSD-G--KQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 350 ~~~~~~~~~~~-~~v~~i~~~~~-~--~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
........... ....+...++. - ..-+..-.++.+.++|-.... .....|..+|..+.+++.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 44332111111 01111111221 1 122233477889999976644 3334578899999999999999999999
Q ss_pred CeEEEEEecCCce-----eeeEee------CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec-----
Q 009188 422 QEIHLWNIEGEVK-----LVAKYK------GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP----- 485 (540)
Q Consensus 422 g~i~i~d~~~~~~-----~~~~~~------~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----- 485 (540)
|.|..|......+ ....++ +.........+..++|++..+.+-+.|..|++++..+|+.+..+.
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999999874111 111111 111111222334448999999999999999999999987665543
Q ss_pred ---------------------------CCCC-CeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc
Q 009188 486 ---------------------------GHSG-AVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 486 ---------------------------~h~~-~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
.|.. .-+.+.|...+. +|+-++-=| |++.++.++.+.+..
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~-flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN-FLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC-EEEeeccee-EEEEEeecCeEEEEe
Confidence 1221 224556777775 666665543 888999888877654
No 322
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.58 E-value=8.4e-08 Score=52.37 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhc
Q 009188 23 VEFVRIIAKALYSLGYTKSGAHLEEES 49 (540)
Q Consensus 23 ~e~~~li~q~L~e~g~~~s~~~L~~Es 49 (540)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=1.4e-05 Score=78.33 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=90.5
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
|...|.--+++..+++++.|+.-|.+++|+-..+ ........+..+.+..++.+++..++|.|+..|.|.++-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~--~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG--EMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch--hhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 4455666667778999999999999999987543 23333344455667777889999999999999999999876642
Q ss_pred E-----EEEe-ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC
Q 009188 310 C-----LHVY-EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 310 ~-----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 349 (540)
. +... +.|+..|++++|++++..+++|...|.|..-.++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2 1111 23678999999999999999999999999888876
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=2.6e-06 Score=85.53 Aligned_cols=180 Identities=10% Similarity=0.103 Sum_probs=130.5
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL 321 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 321 (540)
++..++.|+-...+..+|+... ...+...-....|.-++. +++++.+|...|+|.+-|..+.+.++++..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~---~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE---KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccc---eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 3456777777777888888754 333333333445666664 57899999999999999999999999999999998
Q ss_pred EEEEEecCCCEEEEEeC---------CCcEEEEecCCceEEEeeccccceEEEEEEccC-CCEEEEEecCCeEEEEE---
Q 009188 322 VSCGWHPDRKWIFSGAN---------DKSICMWELGGKELECWKGQRTLKISDLEVTSD-GKQIITMCKESALLLLD--- 388 (540)
Q Consensus 322 ~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~~d--- 388 (540)
.++. -.|+.|++++. |..|++||++..........+. ...-+.|.|. ...+++++..|...+.|
T Consensus 221 SDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 221 SDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceEEEEecccceeeccccc
Confidence 7754 46889999876 4468999998654433222222 1133455554 35678888999999998
Q ss_pred CCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 389 REAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 389 ~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
+.+.. .........+..++++++++.++.|..+|.|.+|.-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 44443 233334455999999999999999999999999984
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=0.00085 Score=65.27 Aligned_cols=113 Identities=11% Similarity=0.163 Sum_probs=86.9
Q ss_pred cEEEEEEec-CCCEEEEE----eCCCc----EEEEecCCceEEE---eeccccceEEEEEEccCCCEEEEEecCCeEEEE
Q 009188 320 GLVSCGWHP-DRKWIFSG----ANDKS----ICMWELGGKELEC---WKGQRTLKISDLEVTSDGKQIITMCKESALLLL 387 (540)
Q Consensus 320 ~v~~~~~~~-~~~~l~~~----~~dg~----i~iwd~~~~~~~~---~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~ 387 (540)
...++.|+. +...+.+. +.+|. -.+|++...++.. ........+.+.+++|+...++.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345677776 44455543 33443 4567764433322 233445589999999999999999999999999
Q ss_pred ECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 388 DREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 388 d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
|...+........-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 287 D~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999988777777788899999999999999999999999998754
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.3e-06 Score=75.70 Aligned_cols=245 Identities=13% Similarity=0.110 Sum_probs=136.1
Q ss_pred ceEEecccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC-CeEEEeeCCCc
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEA 299 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~ 299 (540)
+..+.+.+|...|..++|||..+ ++..++-+.+|+|.|+.+. .....+..| ..+++++|.-|. ++|..|...|.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 34557788899999999999877 7888999999999999876 455566666 789999998765 45666678999
Q ss_pred EEEEECCCCeE-EEEeec--CCCcEEEEEEe------cCCCEEEEEeCCCcEEEEecCC--ceEEE-eeccccceEEEEE
Q 009188 300 VRRWDVSSGNC-LHVYEK--AGLGLVSCGWH------PDRKWIFSGANDKSICMWELGG--KELEC-WKGQRTLKISDLE 367 (540)
Q Consensus 300 i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~------~~~~~l~~~~~dg~i~iwd~~~--~~~~~-~~~~~~~~v~~i~ 367 (540)
|.|||++..+- +..+.. ...+|..++.- +.+..++....+ +.+|++.. ..... ......+...++.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999986542 222211 12344443332 234444444432 55676632 11111 1222233556666
Q ss_pred EccCCCEEEEEecCC-------eEE-EEECCCce--E-EEeec-CC------ceeEEEEcCCCCEEEE-EecCCeEEEEE
Q 009188 368 VTSDGKQIITMCKES-------ALL-LLDREAKV--E-RYIEE-DQ------TITSFSLSRDNKFLLV-NLLNQEIHLWN 428 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~-------~i~-~~d~~~~~--~-~~~~~-~~------~i~~~~~s~~~~~l~~-~~~dg~i~i~d 428 (540)
+.+-.+.++...... .+. --|...+. . ....+ .. .-..+.-.++.++++. +...+.+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 666556655544321 000 01111110 0 00000 00 0111222334454443 45567899999
Q ss_pred ecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 429 IEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
..+. ..+.++... .++ ...++...++.-+...=.|..++||..+
T Consensus 418 ~~s~-evvQ~l~~~-epv--~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF-EVVQTLALS-EPV--LDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh-heeeecccC-cce--eecceeecCCcchhhheecceEEEEecC
Confidence 9887 666666544 332 3344444444433333445567777543
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.0007 Score=58.71 Aligned_cols=178 Identities=8% Similarity=0.026 Sum_probs=101.1
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLV 322 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 322 (540)
..+++.|+..+.+.--|..+++- .-...-+ ..+.+-+.- -|++++.|...|.+.+.+..+|.....+.....--.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~--~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL--IWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE--EeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 34566677777666666654421 1111111 112211111 367899999999999999999988887765543323
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEeec
Q 009188 323 SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYIEE 399 (540)
Q Consensus 323 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~ 399 (540)
.....+++..+..|+.|++.+..|.++....-...-......+-++.+-...+..+...|.+.-...+... ......
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~ 177 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATR 177 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhc
Confidence 34567789999999999999999998766554443333334444555633444555555555444444332 111111
Q ss_pred CCceeE--EEEcCCCCEEEEEecCCeEEEEE
Q 009188 400 DQTITS--FSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 400 ~~~i~~--~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
.++|.+ ++ -+..+..++-||.+.-+|
T Consensus 178 ~~PiF~splc---v~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 178 FGPIFASPLC---VGSSVIITTVDGVLTSFD 205 (354)
T ss_pred CCccccCcee---ccceEEEEEeccEEEEEc
Confidence 222211 11 134455556666666666
No 328
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.47 E-value=0.00088 Score=62.92 Aligned_cols=273 Identities=13% Similarity=0.135 Sum_probs=137.3
Q ss_pred EEecCCCeEEEE-eCCCcEEEEEeecCCceEEEEEecCCC-CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee
Q 009188 238 QFSHNGKYLASS-SNDRSAIIWEVDLNGGVTLKHKLSGHQ-KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE 315 (540)
Q Consensus 238 ~~sp~g~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 315 (540)
+|.++|+.|+.+ ..||.-.+|-++..... ...+.... .......++|+++.++-......++-.|+.+.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 567889766554 45777777766654432 23343332 222246677888888777667789999999998777776
Q ss_pred cCCCcEEEEEEe--cCCCEEEEEeC----------------------CCcEEEEecCCceEEEeeccccceEEEEEEccC
Q 009188 316 KAGLGLVSCGWH--PDRKWIFSGAN----------------------DKSICMWELGGKELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 316 ~~~~~v~~~~~~--~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
....-+-...|. .|+..++-.-. ...|.-.|+.+++........ ..+..+.++|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCC
Confidence 666666556664 35555432211 124556677777766555433 36778889998
Q ss_pred CCEEEEEecCC-------eEEEEECCCceEEEee---cCCceeEEEEcCCCCEEEEEec-----CCeEEEEEecCCceee
Q 009188 372 GKQIITMCKES-------ALLLLDREAKVERYIE---EDQTITSFSLSRDNKFLLVNLL-----NQEIHLWNIEGEVKLV 436 (540)
Q Consensus 372 ~~~l~~~~~d~-------~i~~~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~ 436 (540)
...++.-|..| .|.+.+..+....... ....+..=-|.|+|..+.--+. +..|.-+|..+....
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~- 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR- 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-
Confidence 87777766543 3444444443322221 2233445568999977665332 334666676655221
Q ss_pred eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC----------------cEEEEECCCCceeEe---------ecCCCC-C
Q 009188 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS----------------QVYIWHRASCDLIGA---------LPGHSG-A 490 (540)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg----------------~i~iwd~~~~~~~~~---------~~~h~~-~ 490 (540)
...... . +. ....+++|++++.-+.|. -|+++++..+..... +.++.. .
T Consensus 278 ~~~~~p--~--~~-H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~ 352 (386)
T PF14583_consen 278 RLMEMP--W--CS-HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVT 352 (386)
T ss_dssp EEEEE---S--EE-EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT
T ss_pred EEEeCC--c--ee-eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccC
Confidence 111111 1 12 222378888887655442 466788876654321 111111 1
Q ss_pred eEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 491 VNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 491 v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
=-...|+||++.+|.++...|...||-+.
T Consensus 353 hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 353 HPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 24678999999889999999988777543
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.46 E-value=0.00099 Score=61.38 Aligned_cols=266 Identities=12% Similarity=0.171 Sum_probs=152.4
Q ss_pred CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee----------CCCcEEEEECCCCeEEEEeecCCC-c-
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG----------VEEAVRRWDVSSGNCLHVYEKAGL-G- 320 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-~- 320 (540)
+.+.++|.+.+ +.+-.+.. +-.-.+..+|+++.+++++ ....|.+||..+-.....+.-... .
T Consensus 17 ~rv~viD~d~~---k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSG---KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTT---EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCC---cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 46788886654 33333322 2233466789999988764 223599999999888776553322 1
Q ss_pred -----EEEEEEecCCCEEEEEe--CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC--
Q 009188 321 -----LVSCGWHPDRKWIFSGA--NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA-- 391 (540)
Q Consensus 321 -----v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~-- 391 (540)
....+++.|++++++.. --.+|.+.|+..++......... ...+ +-...+.+.+.|.||.+....+..
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLI-YPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEE-EEEETTEEEEEETTSCEEEEEETSTS
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEE-EecCCCceEEEecCCceEEEEECCCC
Confidence 12346778888877653 33478888988777665444332 1112 111235688999999988877663
Q ss_pred ceE-E---Ee-ecCCc-eeEEEEcCCCCEEEEEecCCeEEEEEecCCc-eeeeEeeCCc---------CCeeEEEeeecc
Q 009188 392 KVE-R---YI-EEDQT-ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV-KLVAKYKGHK---------RSRFVIRSCFGG 455 (540)
Q Consensus 392 ~~~-~---~~-~~~~~-i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~---------~~~~~i~~~~~~ 455 (540)
+.. . .+ ....+ ...-+++..+..++-.+.+|.|+-.|+.... .....+.... ...+.+. .+..
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~-A~~~ 247 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI-AYHA 247 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E-EEET
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee-eecc
Confidence 221 1 11 11122 2334455555566667889999999987653 2222222111 0001111 1112
Q ss_pred CCCcEEEEee--CCC-------cEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEE-eCCCcEEEecCCCCCccc
Q 009188 456 LEQAFIASGS--EDS-------QVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA-SDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 456 ~~~~~l~s~s--~dg-------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~Dg~i~iw~~~~~~~~~ 525 (540)
+.+++.+.-. .+| .|.++|+.+++.+..+.. ..++.+|+.+.+..-+|++. ..++.+.+||..+|+..+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 2333333221 111 588889999999998873 35688999988775466554 468999999999999888
Q ss_pred ccc
Q 009188 526 KDC 528 (540)
Q Consensus 526 ~~~ 528 (540)
+..
T Consensus 327 ~~~ 329 (342)
T PF06433_consen 327 SIE 329 (342)
T ss_dssp EE-
T ss_pred ehh
Confidence 644
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=0.00039 Score=70.19 Aligned_cols=275 Identities=8% Similarity=0.048 Sum_probs=155.2
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC------CeE--EEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK------PVS--CVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY 314 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~--~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 314 (540)
+..++.++.++.+.-.|..++. .+..+..... .+. .+... ++..++.++.++.|.-+|.++|+.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~---~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGK---VLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCCh---hhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 4456777778888888887652 2222222111 010 11111 2267788888999999999999999887
Q ss_pred ecCCCc--EEEEEEec--CCCEEEEEe---------CCCcEEEEecCCceEEEeeccc-c-------------------c
Q 009188 315 EKAGLG--LVSCGWHP--DRKWIFSGA---------NDKSICMWELGGKELECWKGQR-T-------------------L 361 (540)
Q Consensus 315 ~~~~~~--v~~~~~~~--~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~-~-------------------~ 361 (540)
...... -..+.-+| .+..++.++ .+|.+..+|..+++..-..... . .
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 654321 00111111 124555554 3678889999876654322211 0 0
Q ss_pred eE-EEEEEccCCCEEEEEecCC------------------eEEEEECCCceEEEeecCC--------ceeEEEEc----C
Q 009188 362 KI-SDLEVTSDGKQIITMCKES------------------ALLLLDREAKVERYIEEDQ--------TITSFSLS----R 410 (540)
Q Consensus 362 ~v-~~i~~~~~~~~l~~~~~d~------------------~i~~~d~~~~~~~~~~~~~--------~i~~~~~s----~ 410 (540)
.+ ...++.+.+..++.++.++ .+.-+|..+++........ ......+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 01 1234555567778777665 7888999887744432111 00011111 1
Q ss_pred CCC---EEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE------------------eeCCCc
Q 009188 411 DNK---FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS------------------GSEDSQ 469 (540)
Q Consensus 411 ~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s------------------~s~dg~ 469 (540)
++. .+++++.+|.+..+|.+++ +.+-........ + ..++ ..++. ...+|.
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~~~~---~---~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEVEQP---M---AYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCC-cEeeEeEeeccc---c---ccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 333 6778888999999999888 444333211000 0 0022 22222 224678
Q ss_pred EEEEECCCCceeEeecCCC--------CCe--EEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCce
Q 009188 470 VYIWHRASCDLIGALPGHS--------GAV--NCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 470 i~iwd~~~~~~~~~~~~h~--------~~v--~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v 533 (540)
+.-.|..+|+.+-+..... .+. ..+.. .+. +++.++.||.|+.+|.++|+...+...+.++
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEEECCCCc
Confidence 8888999998876554320 111 12222 233 7888889999999999999988765444433
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.1e-05 Score=80.21 Aligned_cols=182 Identities=14% Similarity=0.204 Sum_probs=127.4
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEe
Q 009188 319 LGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYI 397 (540)
Q Consensus 319 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~ 397 (540)
..+.|++++ +++|+-|+.+|.|++++..+.. .....+.. . ..+|.++++++.||++.+..+-+.. ....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~-~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSS-S------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccccc-c------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 355666665 6789999999999999987554 22222221 1 6689999999999999999887766 5557
Q ss_pred ecCCceeEEEEcCC-----CCEEEEEecCCeEEEEEec--CCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcE
Q 009188 398 EEDQTITSFSLSRD-----NKFLLVNLLNQEIHLWNIE--GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQV 470 (540)
Q Consensus 398 ~~~~~i~~~~~s~~-----~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i 470 (540)
....++.+++++|+ .+.+++|+..| +.++.-+ +....+ ......+++..+.+ .|+++|-++.+| |
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W-----~g~lIAWand~G-v 181 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW-----RGNLIAWANDDG-V 181 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe-----cCcEEEEecCCC-c
Confidence 77899999999998 47889999888 7776532 111111 23334444444332 678999988887 8
Q ss_pred EEEECCCCceeEeecCCCCC------eEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 471 YIWHRASCDLIGALPGHSGA------VNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 471 ~iwd~~~~~~~~~~~~h~~~------v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
++||+.+++.+..++..... -..+.|.++.. |+. |+..+|+|..++.+
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVI-GW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVI-GWGDSVKICSIKKR 235 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEE-ecCCeEEEEEEecc
Confidence 99999999888777643333 34678887653 433 45558999988843
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.1e-05 Score=80.31 Aligned_cols=180 Identities=13% Similarity=0.185 Sum_probs=125.4
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
.+.++|++++ +++|+.|+.+|.|++.+.... . .+...|+.. ..+|.++++|+.||+|.|-.+.+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4567777775 678999999999999988633 1 333345443 56899999999999999999999887
Q ss_pred EEEeecCCCcEEEEEEecC-----CCEEEEEeCCCcEEEEecC--CceEEEeeccccceEEEEEEccCCCEEEEEecCCe
Q 009188 311 LHVYEKAGLGLVSCGWHPD-----RKWIFSGANDKSICMWELG--GKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
...+. ...++.+++++|+ .+++++|+..| +.++.-+ +...........++|.++.|. |++++-++.+ -
T Consensus 106 ~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~-G 180 (846)
T KOG2066|consen 106 ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDD-G 180 (846)
T ss_pred ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCC-C
Confidence 77764 4458999999997 56899999988 7776543 122222344455689999986 5666666555 4
Q ss_pred EEEEECCCceE-EEee-------cCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 384 LLLLDREAKVE-RYIE-------EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 384 i~~~d~~~~~~-~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
|++||..++.. .... .......+.|.++.+.+ .| ...+|.+..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IG-WGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Ee-cCCeEEEEEEe
Confidence 88999887662 2221 12234567787665543 33 34568888877
No 333
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=1.7e-06 Score=78.13 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=96.9
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCc-c-cC---hHHHHHHHHHhcCChHHHHHHhcccCCCChhhHhhHHHHH
Q 009188 21 KRVEFVRIIAKALYSLGYTKSGAHLEEESGIP-L-HS---SMVNLFTQQILDGHWDESLATLSKIGLVDESVVKSASFLI 95 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~-~-~~---~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~l 95 (540)
.+.-+.|+|..||.-+||..+|..|.++|.+- + +. .++..+++++++|+...|+.-...-+.........+-|-+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence 46788999999999999999999999999875 1 11 2477888999999999988777754332223334456779
Q ss_pred hhhhhhhcccccchhHHHHHHHhhccCCCC-CchhHHHhhcccccCCc
Q 009188 96 LEQKFFELLDAEKVMDALKTLRAEIAPLCI-KNSRVRELSSCIVSPPK 142 (540)
Q Consensus 96 ~~~~~lell~~~~~~~a~~~l~~~~~~~~~-~~~~~~~l~~~l~~~~~ 142 (540)
..|.|+||++.+++.+|+.+.++.+.|... ..++++....++.+++.
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 999999999999999999999999999875 56677777777766543
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.37 E-value=8.7e-05 Score=71.66 Aligned_cols=238 Identities=17% Similarity=0.177 Sum_probs=134.1
Q ss_pred CcCCCeEEEee---------CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe
Q 009188 285 SSDDQQLLTCG---------VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW 355 (540)
Q Consensus 285 s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 355 (540)
|||+++++... ..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++...++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 56777666632 345789999999876554443 56788899999999998875 47899999876655544
Q ss_pred eccc-----------------cceEEEEEEccCCCEEEEEecCC------------------------------------
Q 009188 356 KGQR-----------------TLKISDLEVTSDGKQIITMCKES------------------------------------ 382 (540)
Q Consensus 356 ~~~~-----------------~~~v~~i~~~~~~~~l~~~~~d~------------------------------------ 382 (540)
.... -..-..+-|+|||++|+....|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 4322 11235688999999998765331
Q ss_pred eEEEEECCCceEEE---e----ecCCceeEEEEcCCCCEEEEEecCC-----eEEEEEecCCceeeeEeeCCcCCe-eEE
Q 009188 383 ALLLLDREAKVERY---I----EEDQTITSFSLSRDNKFLLVNLLNQ-----EIHLWNIEGEVKLVAKYKGHKRSR-FVI 449 (540)
Q Consensus 383 ~i~~~d~~~~~~~~---~----~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~-~~i 449 (540)
.+.++|+.++.... . .....+..+.|.++++.+++...++ .+.++|..++.............+ ..-
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 13334444433111 1 1234577889999988444433222 366677765422211111111110 001
Q ss_pred Eeeec-cCCCcEEEEeeCCCc--EEEEECCCCceeEeecCCCCCeEE-EEeCCCCCCEEEEEeCCC----cEEEecCC-C
Q 009188 450 RSCFG-GLEQAFIASGSEDSQ--VYIWHRASCDLIGALPGHSGAVNC-VSWNPANPHMLASASDDR----TIRIWGLK-D 520 (540)
Q Consensus 450 ~~~~~-~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~Dg----~i~iw~~~-~ 520 (540)
...++ ..++.++.....||. |++++...+.. ..+....-.|+. +.|++++..+++++..++ .|..-++. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 12222 455566666667774 55566665553 455555566755 678888776777777643 45555666 4
Q ss_pred CCccc
Q 009188 521 LNVKR 525 (540)
Q Consensus 521 ~~~~~ 525 (540)
++...
T Consensus 318 ~~~~~ 322 (353)
T PF00930_consen 318 GEPKC 322 (353)
T ss_dssp TEEEE
T ss_pred CCeEe
Confidence 44443
No 335
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=1.7e-05 Score=79.99 Aligned_cols=183 Identities=13% Similarity=0.118 Sum_probs=133.1
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEE
Q 009188 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDL 366 (540)
Q Consensus 287 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 366 (540)
++..++-|+....+..+|+.+.+..+......+.++-+.. +++.+++|...|+|.+-|.++.+.......|.+.+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4567788888888999999999888777666656655544 67899999999999999999988888888888777765
Q ss_pred EEccCCCEEEEEecC---------CeEEEEECCCce-EEEeecCCceeEEEEcCC-CCEEEEEecCCeEEEEEecCCcee
Q 009188 367 EVTSDGKQIITMCKE---------SALLLLDREAKV-ERYIEEDQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEGEVKL 435 (540)
Q Consensus 367 ~~~~~~~~l~~~~~d---------~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~ 435 (540)
.. .|+.|++++.. .-|.+||++... ...+.......-+.|.|. ...+++++..|...+.|..+...+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence 54 68899988754 457899988755 223333333355677775 467888899999999994432222
Q ss_pred -eeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 436 -VAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 436 -~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
...+..+..... +.....+++++.++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~-i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSG-ISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCc-ceeEEecCCCceEEEecccCcEeeec
Confidence 333333333222 33334488999999999999999997
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.31 E-value=0.00019 Score=70.28 Aligned_cols=225 Identities=13% Similarity=0.148 Sum_probs=114.2
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
.+.+....-....+.++|+|++++.++ ||.-.|+.... ..... .+.-...+|.+.+ .+|+-...++|.|+
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~---~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA---WRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIY 94 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT---TEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEE
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC---Ccccc-----cCceeEEEEecCc-cEEEEECCCeEEEE
Confidence 334444555678999999999998855 67788886321 12211 1234567898855 46666668889997
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCe
Q 009188 304 DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
.--+.+..+.++.. ..+..+-. |..|+..+.+ .|.+||+.++......... +|..+.|+++|.+++..+.+ .
T Consensus 95 kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~ 166 (443)
T PF04053_consen 95 KNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-S 166 (443)
T ss_dssp ETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--S
T ss_pred EcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-e
Confidence 43233222233222 12333322 7777776654 8999999988877766654 48999999999999988765 5
Q ss_pred EEEEECCCc------------eEEEeec-CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEE
Q 009188 384 LLLLDREAK------------VERYIEE-DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 384 i~~~d~~~~------------~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 450 (540)
+.+++.... ....... ...|.+.+|..+ .++-.+.. .++. =+.+....+..+ ..+.+.+.
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY-l~~Ge~~~i~~l---d~~~yllg 239 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY-LVNGETGIIAHL---DKPLYLLG 239 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE-EETTEEEEEEE----SS--EEEE
T ss_pred EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE-EEcCCcceEEEc---CCceEEEE
Confidence 666665554 3344444 788999999766 44444444 6665 222222222222 22333333
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
. .+..+.++....|+.|..+.+.
T Consensus 240 y---~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 240 Y---LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp E---ETTTTEEEEE-TT--EEEEE--
T ss_pred E---EccCCEEEEEECCCCEEEEEEC
Confidence 3 2344566666667766666544
No 337
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.30 E-value=1e-06 Score=52.18 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCc
Q 009188 21 KRVEFVRIIAKALYSLGYTKSGAHLEEESGIP 52 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~ 52 (540)
.+.++.++|+|||..+||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999874
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=0.00064 Score=67.79 Aligned_cols=183 Identities=15% Similarity=0.125 Sum_probs=116.4
Q ss_pred ECcCCCeEEEe-eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC----cEEEEecCCceEEEeecc
Q 009188 284 WSSDDQQLLTC-GVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK----SICMWELGGKELECWKGQ 358 (540)
Q Consensus 284 ~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~ 358 (540)
++|||+.+... -..+.+.+.|.++.+....+.... ....+.++++|+++++.+.+. ++...+............
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 34455544322 234567788888877766665443 446778999999998886332 344443322221111111
Q ss_pred ccceEEEEEEccCCCEEEEEecCCeEEEEECCC----c--eEEEeecCCceeEEEEcCCCCEEEEEec-CCeEEEEEecC
Q 009188 359 RTLKISDLEVTSDGKQIITMCKESALLLLDREA----K--VERYIEEDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEG 431 (540)
Q Consensus 359 ~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~----~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~ 431 (540)
.. .-++.++|++... .++.|.+.|..+ . ....+........+.++|||+++++++. ++++.++|+.+
T Consensus 279 ~~----iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 279 AR----IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred HH----HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 10 0133457877665 367899999887 2 3666778888999999999999887665 88999999986
Q ss_pred Cce-----------eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 432 EVK-----------LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 432 ~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
... .+.....-.++ +...| ..+|+...+-.-|..|..||+..
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGP---LHTaF-Dg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGP---LHTAF-DGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCc---ceEEE-CCCCCEEEeEeecceeEEEehHH
Confidence 422 22222222222 22333 67788888889999999999876
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.28 E-value=0.0016 Score=60.06 Aligned_cols=242 Identities=12% Similarity=0.116 Sum_probs=138.9
Q ss_pred EEEEecCCCeEEEEeC----------CCcEEEEEeecCCceEEEEEecC-CC----CCeEEEEECcCCCeEEEee--CCC
Q 009188 236 FLQFSHNGKYLASSSN----------DRSAIIWEVDLNGGVTLKHKLSG-HQ----KPVSCVSWSSDDQQLLTCG--VEE 298 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~~~-h~----~~v~~l~~s~~~~~l~s~~--~dg 298 (540)
.+..+|+|+.+++++. .-.|.+||..+-..... ..+.. |. .....+.++.|+++++... -..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E-I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE-IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE-EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce-EecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 4668999998887532 34689999865422111 12222 11 1233467888999888764 345
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecC-CceEEEe----ec-cccceEEEEEEccC
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELG-GKELECW----KG-QRTLKISDLEVTSD 371 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~----~~-~~~~~v~~i~~~~~ 371 (540)
+|.|-|+..++.+..+...+ |.-..| ....|.+-|.||.+.-..+. .++.... +. .....+..-++...
T Consensus 119 SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred eEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 79999999999988886554 112223 23468888999999888885 3332211 11 11112223344556
Q ss_pred CCEEEEEecCCeEEEEECCCceEEEee--------------cCCceeEEEEcCCCCEEEEEecCC----------eEEEE
Q 009188 372 GKQIITMCKESALLLLDREAKVERYIE--------------EDQTITSFSLSRDNKFLLVNLLNQ----------EIHLW 427 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------~~~~i~~~~~s~~~~~l~~~~~dg----------~i~i~ 427 (540)
+..++..+.+|.|+-.|+......... ..+.-.-+++++..+.|.+-...| .|-+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 667777889999999998876522221 123345578887665555532221 47777
Q ss_pred EecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE-eeCCCcEEEEECCCCceeEeecC
Q 009188 428 NIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS-GSEDSQVYIWHRASCDLIGALPG 486 (540)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~ 486 (540)
|+.+. +.+.++.... ....+... ..+..+|++ ...++.+.+||..+|+.+.++.+
T Consensus 275 D~~t~-krv~Ri~l~~-~~~Si~Vs--qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTH-KRVARIPLEH-PIDSIAVS--QDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTT-EEEEEEEEEE-EESEEEEE--SSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCC-eEEEEEeCCC-ccceEEEc--cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 88887 5566555322 12233332 223335544 45689999999999999988874
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.27 E-value=6.5e-07 Score=86.30 Aligned_cols=241 Identities=10% Similarity=0.188 Sum_probs=148.9
Q ss_pred CCeEEEEECcC--CCeEEEeeCCCcEEEEECCCCeE--EEEeecCCCcEEEEEEec-CCCEEEEEe----CCCcEEEEec
Q 009188 277 KPVSCVSWSSD--DQQLLTCGVEEAVRRWDVSSGNC--LHVYEKAGLGLVSCGWHP-DRKWIFSGA----NDKSICMWEL 347 (540)
Q Consensus 277 ~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~iwd~ 347 (540)
..+.|+++.-+ ...++.|..+|.|.+-.++...- -....++..+.++++|++ |.+.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34566666543 35788888999999988765322 233446677889999999 666777763 3457999999
Q ss_pred CCce-----EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEE-eecCCceeEEEEcC-CCCEEEEEec
Q 009188 348 GGKE-----LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY-IEEDQTITSFSLSR-DNKFLLVNLL 420 (540)
Q Consensus 348 ~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~i~~~~~s~-~~~~l~~~~~ 420 (540)
.++- -..+.........+++|..+.+.+++|.....+.++|++...... .-....+..+.++| .++|++...
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 7641 111222223356688999899999999999999999998654222 22334677788999 778877766
Q ss_pred CCeEEEEE-ecCCceeeeEeeCCcC----CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC--------ceeE---e-
Q 009188 421 NQEIHLWN-IEGEVKLVAKYKGHKR----SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC--------DLIG---A- 483 (540)
Q Consensus 421 dg~i~i~d-~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~---~- 483 (540)
||.|.+|| .+.-..++..+..... ....+.+|... .|...+..-..++|+.+|+..- .... .
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~ 294 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESK 294 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cchhhhhccCcceEEEecccccCCcccccccceeeeccc
Confidence 99999999 3332233333322222 25556666644 4444444445578999986521 1111 1
Q ss_pred --ecCC--CCCeEEEEeCCCCC-CEEEEEeCCCcEEEecCC
Q 009188 484 --LPGH--SGAVNCVSWNPANP-HMLASASDDRTIRIWGLK 519 (540)
Q Consensus 484 --~~~h--~~~v~~l~~~~~~~-~~l~s~~~Dg~i~iw~~~ 519 (540)
++.. -+.|.+..||+..+ .....+-..-++.-+++.
T Consensus 295 ~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 295 YPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred ccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 2211 25688888887652 234444444444444443
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0039 Score=60.74 Aligned_cols=259 Identities=10% Similarity=0.092 Sum_probs=165.2
Q ss_pred cEEEEEEecCCCeEEEEeC-CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeE-EEeeCCCcEEEEECCCCeE
Q 009188 233 EVWFLQFSHNGKYLASSSN-DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL-LTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~ 310 (540)
....+...|++..+..... ...+...+.. .. ........-......++.++.+..+ ++...++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n--~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN--TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cc--eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 4556778888865444332 2234444433 11 1111111111334567888888744 4444568899999888777
Q ss_pred EEEeecCCCcEEEEEEecCCCEEEEEeC---CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEEE
Q 009188 311 LHVYEKAGLGLVSCGWHPDRKWIFSGAN---DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESALLL 386 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~ 386 (540)
........ ....++++++++.++++.. ++++.+.|-.+............+ ..++++|+|..++... .++.+.+
T Consensus 109 ~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 109 LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 77665443 5678999999988887766 678999998877766654333323 8999999999776665 7889999
Q ss_pred EECCCceEEE------eecCCceeEEEEcCCCCEEEEEecC---CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCC
Q 009188 387 LDREAKVERY------IEEDQTITSFSLSRDNKFLLVNLLN---QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE 457 (540)
Q Consensus 387 ~d~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 457 (540)
.|..+..... .........+.++|+|+++.+.... +.+...|..+.................+ ...|+
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v---~~~p~ 263 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGV---AVDPA 263 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCce---eECCC
Confidence 9977766442 3445566789999999977665544 5888888877622222122222111111 22788
Q ss_pred CcEEEEeeC-CCcEEEEECCCCceeEeecCCCC---CeEEEEeCCC
Q 009188 458 QAFIASGSE-DSQVYIWHRASCDLIGALPGHSG---AVNCVSWNPA 499 (540)
Q Consensus 458 ~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~ 499 (540)
|.++.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 264 g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 264 GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 888888744 48999999988887776654332 3555555543
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=3.6e-07 Score=88.04 Aligned_cols=196 Identities=15% Similarity=0.220 Sum_probs=127.8
Q ss_pred CcEEEEEEecC--CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc-CCCeEEEee----CCCcEEEEE
Q 009188 232 DEVWFLQFSHN--GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCG----VEEAVRRWD 304 (540)
Q Consensus 232 ~~V~~~~~sp~--g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~----~dg~i~iwd 304 (540)
..+.|++++.+ ...++.|..+|.|.+-....... .......+|..++++++|++ |.+.||+|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 35567766553 34788899999999987653211 12344567889999999998 455666652 356799999
Q ss_pred CCCC--eEE--EEeec-CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc-CCCEEEEE
Q 009188 305 VSSG--NCL--HVYEK-AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS-DGKQIITM 378 (540)
Q Consensus 305 ~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~ 378 (540)
+.++ .+. ..+.. ......+++|..+.+.+.+|.....+.++|++...... ....+..+..+.++| .+.++++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceecc
Confidence 9886 221 12222 33456688999899999999999999999997322211 111122566778888 56666554
Q ss_pred ecCCeEEEEECCCce----EEEe----ecCCceeEEEEcCCCC-EEEEEe-cCCeEEEEEec
Q 009188 379 CKESALLLLDREAKV----ERYI----EEDQTITSFSLSRDNK-FLLVNL-LNQEIHLWNIE 430 (540)
Q Consensus 379 ~~d~~i~~~d~~~~~----~~~~----~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~ 430 (540)
.||.+.+||...+. .... .....+..++|.|... .+++.. ..++|++||+.
T Consensus 215 -~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 -SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 49999999942221 1111 1233588999999543 344443 46789999985
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.21 E-value=0.0017 Score=60.49 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=135.0
Q ss_pred cCCCeEEEeeCCCcEEEEECCC-CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe---------
Q 009188 286 SDDQQLLTCGVEEAVRRWDVSS-GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW--------- 355 (540)
Q Consensus 286 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------- 355 (540)
..++.|+.|+.+| +.++++.. ........ ...|..+...++-+.+++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899998888 99999833 33333332 22399999999877776664 49999999864222221
Q ss_pred -----eccccceEEEEE--EccCCCEEEEEecCCeEEEEECCCc------eEEEeecCCceeEEEEcCCCCEEEEEecCC
Q 009188 356 -----KGQRTLKISDLE--VTSDGKQIITMCKESALLLLDREAK------VERYIEEDQTITSFSLSRDNKFLLVNLLNQ 422 (540)
Q Consensus 356 -----~~~~~~~v~~i~--~~~~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 422 (540)
.......+...+ -...+...++......|.+|..... ..........+.+++|. ++.+++|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-
Confidence 111122344444 2234444445555558888776552 23445567888999998 6677777744
Q ss_pred eEEEEEecCCceeeeEeeCCcC---------CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeE--eecCCCCCe
Q 009188 423 EIHLWNIEGEVKLVAKYKGHKR---------SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIG--ALPGHSGAV 491 (540)
Q Consensus 423 ~i~i~d~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~h~~~v 491 (540)
...+.|+.+. .....+..... ....+.... -+++.+|++. |..-.+.|. .|++.. .+. -...+
T Consensus 158 ~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~~~p 231 (275)
T PF00780_consen 158 GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WSSAP 231 (275)
T ss_pred ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcC-CCCcCcccEEE-cCCch
Confidence 4788888854 22222211110 111122222 2345666543 222333343 444433 222 23456
Q ss_pred EEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCceEeccC
Q 009188 492 NCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVHYCNG 538 (540)
Q Consensus 492 ~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v~~c~~ 538 (540)
.++++. .+ +++..+.+ .|.||++.++++.+....++-...|++
T Consensus 232 ~~~~~~--~p-yli~~~~~-~iEV~~~~~~~lvQ~i~~~~~~~l~~~ 274 (275)
T PF00780_consen 232 QSVAYS--SP-YLIAFSSN-SIEVRSLETGELVQTIPLPNIRLLCSG 274 (275)
T ss_pred hEEEEE--CC-EEEEECCC-EEEEEECcCCcEEEEEECCCEEEEecC
Confidence 667664 34 56666554 599999999999988776655554443
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=6.1e-05 Score=75.37 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=134.7
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-CeE-
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-GNC- 310 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~- 310 (540)
.+++++|+|..-.|+.|-.-|.+.+|..... +.......|..+|..+.||++|..++++..-|.+.+|...- |+.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q 137 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ 137 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCc---eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc
Confidence 3567999999989999999999999987644 44555678999999999999999999999999999998652 110
Q ss_pred ----------------EEEee---------------cCCCcEE------------EE--EEecCCCEEEEEeCCCcEEEE
Q 009188 311 ----------------LHVYE---------------KAGLGLV------------SC--GWHPDRKWIFSGANDKSICMW 345 (540)
Q Consensus 311 ----------------~~~~~---------------~~~~~v~------------~~--~~~~~~~~l~~~~~dg~i~iw 345 (540)
...+. +....+- ++ .=.|+|..|+.++.+|+|+..
T Consensus 138 ~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyv 217 (1416)
T KOG3617|consen 138 TSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYV 217 (1416)
T ss_pred cchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEE
Confidence 00110 0000000 00 012567788888899999888
Q ss_pred ecCCceEEEeeccccceEEEEEEccCCCEEEE------------------------------EecCCeEEEEECCC----
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSDGKQIIT------------------------------MCKESALLLLDREA---- 391 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~------------------------------~~~d~~i~~~d~~~---- 391 (540)
|-++........... ..+-|.+....+++ |+..|.+.+-...+
T Consensus 218 dq~g~~~~V~k~dS~---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~ 294 (1416)
T KOG3617|consen 218 DQNGRQRTVHKLDSE---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRK 294 (1416)
T ss_pred cCCCcEEEEEEccch---HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccC
Confidence 865544332221111 00111111111111 11112221111111
Q ss_pred ceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC------ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee
Q 009188 392 KVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE------VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS 465 (540)
Q Consensus 392 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s 465 (540)
....-......+++++++..+..+..|...|.+.+|--.+. ..-...+.+.......|+.+-|++-...++.-+
T Consensus 295 ~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 295 SEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred CcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 00111234567899999999999999999999999964321 122334444444444566666676555544444
Q ss_pred C
Q 009188 466 E 466 (540)
Q Consensus 466 ~ 466 (540)
.
T Consensus 375 ~ 375 (1416)
T KOG3617|consen 375 E 375 (1416)
T ss_pred h
Confidence 3
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00024 Score=69.30 Aligned_cols=193 Identities=15% Similarity=0.135 Sum_probs=125.4
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEe---CC-CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CC
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSS---ND-RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VE 297 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~---~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d 297 (540)
..+.+..-...+..-+|+|++..++..+ .. ..+.+++++.+... ....+.++.. .-+|+|||+.|+.+. .|
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~~~g~~~---~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILNFNGNNG---APAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeeccCCccC---CccCCCCCCEEEEEECCC
Confidence 3445555566788889999999776542 22 35888998876443 3333444443 458999999887664 45
Q ss_pred Cc--EEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-C--cEEEEecCCceEEEeeccccceEEEEEEccCC
Q 009188 298 EA--VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND-K--SICMWELGGKELECWKGQRTLKISDLEVTSDG 372 (540)
Q Consensus 298 g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 372 (540)
|. |.+.|+.++...+ +....+.-+.=.|+|||+.++-.+.. | .|.+++.++.............. .-.|+|||
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG 337 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDG 337 (425)
T ss_pred CCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCC
Confidence 54 7777887776433 44333333466899999998866554 3 57888887776655444333222 67899999
Q ss_pred CEEEEEecC-Ce--EEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecC
Q 009188 373 KQIITMCKE-SA--LLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 373 ~~l~~~~~d-~~--i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
++++..+.. |. |.+.|..+.. ............-++.++++.+...+..
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 999987743 33 5566665544 4555555555667788888777665543
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=2.3e-05 Score=75.85 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=82.3
Q ss_pred EEEEEEecC-CCeEEEE----eCCCc----EEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE
Q 009188 234 VWFLQFSHN-GKYLASS----SNDRS----AIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD 304 (540)
Q Consensus 234 V~~~~~sp~-g~~l~tg----~~dg~----i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 304 (540)
..++.||-. ...+.|. +.+|. -.+|++..+.-.....+--.....|.+++++|+...++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 357777763 3344443 33443 34566653321122222335778899999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce
Q 009188 305 VSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE 351 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 351 (540)
...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 8776433 33445567899999999999999999999999986433
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.18 E-value=0.0026 Score=64.23 Aligned_cols=235 Identities=12% Similarity=0.151 Sum_probs=131.2
Q ss_pred CeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC--eEEEEECc--CCCeEEEee---------CCCcEEEEECCCCeE
Q 009188 244 KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP--VSCVSWSS--DDQQLLTCG---------VEEAVRRWDVSSGNC 310 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~--~~~~l~s~~---------~dg~i~iwd~~~~~~ 310 (540)
..++.++.+|.|.-+|..+++ .+......... -..+.-+| .+..++.++ .++.+..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~---~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGK---QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCC---EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 578888889999999988763 33333222110 00011111 123444443 367899999999998
Q ss_pred EEEeecCCC--------------------cE-EEEEEecCCCEEEEEeCCC------------------cEEEEecCCce
Q 009188 311 LHVYEKAGL--------------------GL-VSCGWHPDRKWIFSGANDK------------------SICMWELGGKE 351 (540)
Q Consensus 311 ~~~~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~ 351 (540)
+..+..... .+ ...++.+.+..++.++.++ .|.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 887754311 01 1234444566788887665 68888998777
Q ss_pred EEEeeccccce-----------EEEEEEccCCC---EEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEE
Q 009188 352 LECWKGQRTLK-----------ISDLEVTSDGK---QIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 352 ~~~~~~~~~~~-----------v~~i~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 417 (540)
..-........ +..+. .-++. .+++++.+|.+..+|..++......... ...++.+| ..+++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv 343 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEE
Confidence 65433211100 11110 12333 5778889999999999987744332211 11233334 22333
Q ss_pred E------------------ecCCeEEEEEecCCceeeeEeeCCcCC-e----eEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 418 N------------------LLNQEIHLWNIEGEVKLVAKYKGHKRS-R----FVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 418 ~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~-~----~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
+ ..+|.+.-.|..++ +.+-........ . ...........+..++.++.||.|+.+|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 2 13567777887776 333332221000 0 0000000012457888899999999999
Q ss_pred CCCCceeEeecC
Q 009188 475 RASCDLIGALPG 486 (540)
Q Consensus 475 ~~~~~~~~~~~~ 486 (540)
..+|+.+-+.+-
T Consensus 423 ~~tG~~lW~~~~ 434 (488)
T cd00216 423 ATTGKELWKFRT 434 (488)
T ss_pred CCCCceeeEEEC
Confidence 999999877763
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00062 Score=67.89 Aligned_cols=216 Identities=12% Similarity=0.073 Sum_probs=125.2
Q ss_pred EecCCCeEEEE-eCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC----cEEEEECCCCeEEEE
Q 009188 239 FSHNGKYLASS-SNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE----AVRRWDVSSGNCLHV 313 (540)
Q Consensus 239 ~sp~g~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~ 313 (540)
++|||+.+... -..+.+.+.|.++. +...++.-- +....+.++++|+++++.+.+. ++..-+..+...+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etm---eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETM---EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccc---eEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 45566554322 22355666665532 333333221 2345678899999998876432 222222222111111
Q ss_pred eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-----ceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEEEE
Q 009188 314 YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-----KELECWKGQRTLKISDLEVTSDGKQIITMC-KESALLLL 387 (540)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~ 387 (540)
+.... + -++.++|++... .++.|.+.|..+ .......... .....+.++|||+++++++ .+.++.++
T Consensus 276 fni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 276 FNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred EchHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 11110 0 023457776665 356899999987 3444433332 3688999999999988776 48899999
Q ss_pred ECCCce-------------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC---------ceeeeEeeCCcCC
Q 009188 388 DREAKV-------------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE---------VKLVAKYKGHKRS 445 (540)
Q Consensus 388 d~~~~~-------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~ 445 (540)
|+.+.. .....-.......+|+++|+...+-..|..|..|++... ...+.++..|..+
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 987743 122223445567899999998888889999999998751 1345555544443
Q ss_pred eeEEEee--eccCCCcEEEEee
Q 009188 446 RFVIRSC--FGGLEQAFIASGS 465 (540)
Q Consensus 446 ~~~i~~~--~~~~~~~~l~s~s 465 (540)
....... .-.++|++|++..
T Consensus 429 gh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 429 GHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ceeeecCCCcCCCCCCEEEEcc
Confidence 2222111 1256777777654
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.16 E-value=0.01 Score=58.96 Aligned_cols=244 Identities=14% Similarity=0.163 Sum_probs=137.2
Q ss_pred eEEEEECcCCCeEEEe-eCCC----cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC-----------cE
Q 009188 279 VSCVSWSSDDQQLLTC-GVEE----AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-----------SI 342 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i 342 (540)
+....++|+|+++|.+ +..| .+++.|+.+|+.+...-.. .....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3357889999998865 3334 4999999999876532111 1223499999988877665433 38
Q ss_pred EEEecCCceE---EEeeccccce-EEEEEEccCCCEEEEEecC----CeEEEEECCCc-----e-EEEeecCCceeEEEE
Q 009188 343 CMWELGGKEL---ECWKGQRTLK-ISDLEVTSDGKQIITMCKE----SALLLLDREAK-----V-ERYIEEDQTITSFSL 408 (540)
Q Consensus 343 ~iwd~~~~~~---~~~~~~~~~~-v~~i~~~~~~~~l~~~~~d----~~i~~~d~~~~-----~-~~~~~~~~~i~~~~~ 408 (540)
+.|.+.+... ..+....... ...+..++|+++++..... ..+.+.+.... . .........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888865432 2222323223 6788899999998765432 35788888764 2 333333333333332
Q ss_pred cCCCCEEEEEec---CCeEEEEEecCCce--eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC--cEEEEECCCCcee
Q 009188 409 SRDNKFLLVNLL---NQEIHLWNIEGEVK--LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS--QVYIWHRASCDLI 481 (540)
Q Consensus 409 s~~~~~l~~~~~---dg~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~ 481 (540)
+..+.+++.... ++.|.-.++..... ....+..+........+.. ..+.+++....++ .|+++++..+...
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 224444443322 35666677765531 1223444444322222221 2344555555555 6889998834443
Q ss_pred Eeec-CCCCCeEEEEeCCCCCCEEEEEeC---CCcEEEecCCCCCccc
Q 009188 482 GALP-GHSGAVNCVSWNPANPHMLASASD---DRTIRIWGLKDLNVKR 525 (540)
Q Consensus 482 ~~~~-~h~~~v~~l~~~~~~~~~l~s~~~---Dg~i~iw~~~~~~~~~ 525 (540)
..+. .-.+.|..+...++++.+.++.+. -+++.-||+.+++...
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 3333 234557788777777666666654 3569999999988654
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.14 E-value=0.0025 Score=60.00 Aligned_cols=237 Identities=11% Similarity=0.099 Sum_probs=126.1
Q ss_pred EECcCCCeEEEeeC-CC--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc
Q 009188 283 SWSSDDQQLLTCGV-EE--AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR 359 (540)
Q Consensus 283 ~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 359 (540)
+|.++|+.|+.++. || .+.+.|+.+++..+.-.+.........++++++.++-...+..|.-.|+++.+........
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 56778877666654 44 5788899999877766554333335667888888876666678999999988776666555
Q ss_pred cceEEEEEE--ccCCCEEEEEec----------------------CCeEEEEECCCce-EEEeecCCceeEEEEcCCCCE
Q 009188 360 TLKISDLEV--TSDGKQIITMCK----------------------ESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKF 414 (540)
Q Consensus 360 ~~~v~~i~~--~~~~~~l~~~~~----------------------d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~ 414 (540)
...+....| +.|+..++..-. ...|...|+.++. .........+..+.|+|....
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 555544555 445666543321 1356667777766 455566778889999996544
Q ss_pred -EEEEec---CC-eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe-----eCCCcEEEEECCCCceeEee
Q 009188 415 -LLVNLL---NQ-EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG-----SEDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 415 -l~~~~~---dg-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~ 484 (540)
|+-|-. +. .-+||-++........+..+.. .-.+..-+|.++|..|.-- +.+..|.-+|..+++.....
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 444443 12 2477877765555555554443 4456667789999876542 23446777888887654322
Q ss_pred cCCCCCeEEEEeCCCCCCEEEEEeCCC----------------cEEEecCCCCCc
Q 009188 485 PGHSGAVNCVSWNPANPHMLASASDDR----------------TIRIWGLKDLNV 523 (540)
Q Consensus 485 ~~h~~~v~~l~~~~~~~~~l~s~~~Dg----------------~i~iw~~~~~~~ 523 (540)
. ......+.-++++. +++-=|.|. -|++++++.+..
T Consensus 281 ~--~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 281 E--MPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp E--E-SEEEEEE-TTSS-EEEEEE-------------------EEEEEETTTTEE
T ss_pred e--CCceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 2 22455666788886 665444432 466778876654
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.12 E-value=0.0091 Score=58.61 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=120.8
Q ss_pred cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEe-------ecCCCcEEEEEE
Q 009188 254 SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY-------EKAGLGLVSCGW 326 (540)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~ 326 (540)
.|.||+.. + . ++..+.-..+.+.++.|+.+ ..|+....||.++++|+. |+....+ ......+....+
T Consensus 62 ~I~iys~s-G-~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSS-G-K--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCC-C-C--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCccccccccccc
Confidence 48888765 2 2 22333323388999999875 456667799999999986 4331111 111112222233
Q ss_pred ecCCCEEEEEeCCCcEEEEecCCceEE--Eeeccc-------c-ceEE-EEEEccCCCEEEEEecCCeEEEEECCCceEE
Q 009188 327 HPDRKWIFSGANDKSICMWELGGKELE--CWKGQR-------T-LKIS-DLEVTSDGKQIITMCKESALLLLDREAKVER 395 (540)
Q Consensus 327 ~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-------~-~~v~-~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 395 (540)
..+| ++.-..++.+.+.+--..... ...... . .... ...++.+....+....++.+.+.+.....
T Consensus 136 ~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~-- 211 (410)
T PF04841_consen 136 YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK-- 211 (410)
T ss_pred CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--
Confidence 3344 333334455544432221111 100000 0 0010 12344455555555556666644433221
Q ss_pred EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCC-cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 396 YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH-KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 396 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
.....+++..+++||++++++.-..+|.+.+.+..-. +....+... .... ..++-++.|..+..|.
T Consensus 212 ~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p------------~~~~WCG~dav~l~~~ 278 (410)
T PF04841_consen 212 QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPP------------KQMAWCGNDAVVLSWE 278 (410)
T ss_pred cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCC------------cEEEEECCCcEEEEeC
Confidence 1334578999999999999999999999988875433 333333322 1111 2333444455555552
Q ss_pred CCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 475 RASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 475 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
..+..+...... +.|.-++. .++..-.|| |||..-.+-+..++
T Consensus 279 ----~~l~lvg~~~~~---~~~~~~~~-~~l~~E~DG-~riit~~~~~~l~~ 321 (410)
T PF04841_consen 279 ----DELLLVGPDGDS---ISFWYDGP-VILVSEIDG-VRIITSTSHEFLQR 321 (410)
T ss_pred ----CEEEEECCCCCc---eEEeccCc-eEEeccCCc-eEEEeCCceEEEEE
Confidence 122222222222 23333443 445555555 77776665555443
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.0027 Score=60.59 Aligned_cols=214 Identities=17% Similarity=0.221 Sum_probs=122.4
Q ss_pred CcEEEEECCCCeEEEEeecC-CCcEEEEEEec---C----CCEEEEEeC---------C-CcEEEEecCCc-----eEEE
Q 009188 298 EAVRRWDVSSGNCLHVYEKA-GLGLVSCGWHP---D----RKWIFSGAN---------D-KSICMWELGGK-----ELEC 354 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~---~----~~~l~~~~~---------d-g~i~iwd~~~~-----~~~~ 354 (540)
..|++.|..+.+.+..+.-. ...+.+++... + ..+|++|+. . |.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888887777666533 23444443322 2 457777653 2 88999999773 3332
Q ss_pred e-eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 355 W-KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 355 ~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
. .....++|.+++-- ++ .+++ +.++.+.+|++.... ........++...+....++++++|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 2 22334578888766 33 4333 445889999887655 22222333334444444567999999999999887765
Q ss_pred CceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-------Cc--e--eEeecCCCCCeEEE---EeC
Q 009188 432 EVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-------CD--L--IGALPGHSGAVNCV---SWN 497 (540)
Q Consensus 432 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-------~~--~--~~~~~~h~~~v~~l---~~~ 497 (540)
.......+.....+.....+.+.. +++.++.+..+|.+.++.... +. + ...+. ....|+++ ++.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred cCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 434344444334444455555542 335899999999999998652 22 2 22232 34667887 555
Q ss_pred CC--CCC-----EEEEEeCCCcEEEe
Q 009188 498 PA--NPH-----MLASASDDRTIRIW 516 (540)
Q Consensus 498 ~~--~~~-----~l~s~~~Dg~i~iw 516 (540)
|. +.. .++-++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 52 221 47888899998743
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.10 E-value=0.00055 Score=66.18 Aligned_cols=253 Identities=10% Similarity=0.078 Sum_probs=131.9
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCc----------------------------------------eEEEEEe
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG----------------------------------------VTLKHKL 272 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~----------------------------------------~~~~~~~ 272 (540)
.|+.+.|+++..-|+.|...|.|.||.+..+.. +.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988899999999999998753311 1222333
Q ss_pred cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee--c------CCCcEEEEEEec-----CC---CEEEEE
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE--K------AGLGLVSCGWHP-----DR---KWIFSG 336 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~~ 336 (540)
....++|++++.| |=.+++.|..+|.+.|.|++....+..-. . ....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4457889999997 55599999999999999998888776532 1 234677888863 33 367888
Q ss_pred eCCCcEEEEecC--C-ceEEEeeccccceEEEEEE--ccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcC-
Q 009188 337 ANDKSICMWELG--G-KELECWKGQRTLKISDLEV--TSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSR- 410 (540)
Q Consensus 337 ~~dg~i~iwd~~--~-~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~- 410 (540)
...|.+.+|.+- . +.. .+..+.. ..++..+ .|..++..++...... ...+. ...+
T Consensus 162 Tn~G~v~~fkIlp~~~g~f---------~v~~~~~~~~~~~~i~-------~I~~i~~~~G~~a~At-~~~~~--~l~~g 222 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRF---------SVQFAGATTNHDSPIL-------SIIPINADTGESALAT-ISAMQ--GLSKG 222 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-E---------EEEEEEEE--SS-----------EEEEEETTT--B-B-B-HHHHH--GGGGT
T ss_pred eCCCCEEEEEEecCCCCce---------EEEEeeccccCCCceE-------EEEEEECCCCCcccCc-hhHhh--ccccC
Confidence 889999888762 1 111 1111110 0111110 1222233222210000 00000 0000
Q ss_pred -CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeec----cCCCcEEEEeeCCCcEEEEECCCCceeEeec
Q 009188 411 -DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG----GLEQAFIASGSEDSQVYIWHRASCDLIGALP 485 (540)
Q Consensus 411 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 485 (540)
.-..+++...+..++++...+.....+.+ .....+-.+++. ...+..|++-..+|.|++|.+..-+.+..+.
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred CCcCcEEEEEcccceEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 11224444557889999987663333344 221222222222 2356778889999999999999988887766
Q ss_pred CCC----CCeEEEEeCCCCCCEEEEEeC
Q 009188 486 GHS----GAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 486 ~h~----~~v~~l~~~~~~~~~l~s~~~ 509 (540)
-+. ..+...+++++|. +++-.|.
T Consensus 300 l~~~~d~~~~~~ssis~~Gd-i~~~~gp 326 (395)
T PF08596_consen 300 LPPPLDSRRLSSSSISRNGD-IFYWTGP 326 (395)
T ss_dssp -SS---HHHHTT-EE-TTS--EEEE-SS
T ss_pred CCCccccccccccEECCCCC-EEEEeCc
Confidence 432 2344566788886 5544443
No 354
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.08 E-value=1.8e-06 Score=58.48 Aligned_cols=53 Identities=30% Similarity=0.387 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCChHHHHHHhcccCCCChhhHhhHHHHHhhhhhhhcccccch
Q 009188 57 MVNLFTQQILDGHWDESLATLSKIGLVDESVVKSASFLILEQKFFELLDAEKV 109 (540)
Q Consensus 57 ~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~lell~~~~~ 109 (540)
++..++++|+.|+|+.|+..+...........+.+.|.+++|+|+|+++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 47889999999999999999998866555555678899999999999987654
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0048 Score=55.37 Aligned_cols=201 Identities=9% Similarity=0.095 Sum_probs=113.6
Q ss_pred EeecCCCcEEEEEEecCCC-EEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 313 VYEKAGLGLVSCGWHPDRK-WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
.+.+-...+..++|+|+.+ .+++....+.|..++.++..+....-......-.+++..++.++++.-.++.+.+++...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3445555799999999755 556667778898888876665555444455788999988887777766789999888733
Q ss_pred ce-----E--EEe------ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC--CceeeeE--eeCCc---CCeeEEE-
Q 009188 392 KV-----E--RYI------EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG--EVKLVAK--YKGHK---RSRFVIR- 450 (540)
Q Consensus 392 ~~-----~--~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~--~~~~~---~~~~~i~- 450 (540)
.. . ... ..+..+-.++|+|.++.|+++-...-..+|.++. ....... ..... .....+.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 11 1 111 2445688999999988888888777777777764 1111111 10000 0111111
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC---------CCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS---------GAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
..+....+.+++.+..+..|..+| .+|+++..+.-.. ...-.|+|.++|. +. ..+.-+..+++
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LY-IVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EE-EEETTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EE-EEcCCceEEEe
Confidence 223355677888888889999999 6777765543211 2467899999885 44 44455544443
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.001 Score=65.01 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=103.7
Q ss_pred ecCCCCCeEEEEECcCCCeEEEee---CC-CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEE-EeCCC--cEEE
Q 009188 272 LSGHQKPVSCVSWSSDDQQLLTCG---VE-EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFS-GANDK--SICM 344 (540)
Q Consensus 272 ~~~h~~~v~~l~~s~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~i 344 (540)
+..-...+..-+|+|++..++..+ .. ..+.++++.+++...... ....-..-+|+|||+.++. ...|| .|++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 344455677789999998776653 22 459999999987655554 2233345689999997765 45566 5777
Q ss_pred EecCCceEEEeeccccceEEEEEEccCCCEEEEEec-CC--eEEEEECCCceEE-EeecCCceeEEEEcCCCCEEEEEec
Q 009188 345 WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK-ES--ALLLLDREAKVER-YIEEDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 345 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
+|+.++....+..... .-..=.|+|||+.++..+. .| .|.+++..+.... .......-..-.|+|+|++++..+.
T Consensus 267 ~dl~~~~~~~Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 267 MDLDGKNLPRLTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred EcCCCCcceecccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 7887777555333332 3336689999999987764 33 4777777776533 2223333337789999999988775
Q ss_pred C-Ce--EEEEEecCC
Q 009188 421 N-QE--IHLWNIEGE 432 (540)
Q Consensus 421 d-g~--i~i~d~~~~ 432 (540)
. |. |.+.|+.+.
T Consensus 346 ~~g~~~i~~~~~~~~ 360 (425)
T COG0823 346 SGGQWDIDKNDLASG 360 (425)
T ss_pred cCCceeeEEeccCCC
Confidence 3 43 555666554
No 357
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.06 E-value=4.2e-06 Score=69.25 Aligned_cols=133 Identities=23% Similarity=0.280 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcCChHHHHHHhcccCCCChhhHhhHHHHHhhhhhhhcccccchhHHHHHHHhhccCCCC-CchhHHHhhc
Q 009188 57 MVNLFTQQILDGHWDESLATLSKIGLVDESVVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCI-KNSRVRELSS 135 (540)
Q Consensus 57 ~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~~~~-~~~~~~~l~~ 135 (540)
+...++++|.+|+++.|+..+.......-.....+.|.++.|+|+|++..++..+|+...|+.+.|... ..+.++++..
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467889999999999999999886422222235678999999999999999999999999998866554 5566777777
Q ss_pred ccccCCccccccCCCCcccccccHHHHHHHHhhcCCCCCCcCh-hHHHHHHHHHH
Q 009188 136 CIVSPPKCVVVCSPKQDIVRAKSRPKLLEELQKLLPPMIMIPE-RRLEHLVEQAL 189 (540)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~-~rl~~ll~~~~ 189 (540)
++..++............-....|+.+++.+...+-...-.|+ ..|..++.+..
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~ 138 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGL 138 (145)
T ss_pred HHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 7765543320000111111225678888887776544444443 45666655544
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.02 E-value=0.0088 Score=53.69 Aligned_cols=199 Identities=16% Similarity=0.219 Sum_probs=109.0
Q ss_pred EecccCcCcEEEEEEecCCCeE-EEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYL-ASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
+.+.+-...+..++|+|+...| ++....+.|...+. .+.......+.+ .+..-.|++..++.++++.-.++.+.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 4666777789999999986645 55555666655554 343333333444 3568889998888777776668889998
Q ss_pred ECCCCe------EEEEee-----cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC----ceEEEe-------eccccc
Q 009188 304 DVSSGN------CLHVYE-----KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG----KELECW-------KGQRTL 361 (540)
Q Consensus 304 d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~-------~~~~~~ 361 (540)
++.... ....+. .+...+-.++|++.++.|+++-...-..+|.++. ...... ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 883321 112222 2345689999999888888877776666776643 111111 112233
Q ss_pred eEEEEEEccCCCEE-EEEecCCeEEEEECCCceEEEeecC----------CceeEEEEcCCCCEEEEEecCCeEEEE
Q 009188 362 KISDLEVTSDGKQI-ITMCKESALLLLDREAKVERYIEED----------QTITSFSLSRDNKFLLVNLLNQEIHLW 427 (540)
Q Consensus 362 ~v~~i~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~i~ 427 (540)
.+.+++++|....+ +....+..+..+|..........-. ...-.|+|.++|+..+++ ..+..+.|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 57889999876554 4555677788899777654433322 356789999998655554 45544443
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.018 Score=56.13 Aligned_cols=243 Identities=12% Similarity=0.097 Sum_probs=151.9
Q ss_pred CeEEEEECcCCCeEEEeeC-CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEE-EeCCCcEEEEecCCceEEEe
Q 009188 278 PVSCVSWSSDDQQLLTCGV-EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFS-GANDKSICMWELGGKELECW 355 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~ 355 (540)
....+...+++..+..... ...+..-+................-..++.++.++.+++ ...++.|.+.|..+......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 4556677788755544432 224555554422222211111134456788888875554 44457899999776655544
Q ss_pred eccccceEEEEEEccCCCEEEEEec---CCeEEEEECCCceE-EEeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEec
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMCK---ESALLLLDREAKVE-RYIEEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIE 430 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~~d~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~ 430 (540)
..... ....++++++++.+.++.. ++.+.+.|..+... ...........++++|+|+.+.+.. .++.+.+.|..
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 43333 6778999999988887776 68899999887662 2232222338999999999766665 78899999976
Q ss_pred CCceeee-E----eeCCcCCeeEEEeeeccCCCcEEEEeeCC---CcEEEEECCCCceeEeecCCCC-CeEEEEeCCCCC
Q 009188 431 GEVKLVA-K----YKGHKRSRFVIRSCFGGLEQAFIASGSED---SQVYIWHRASCDLIGALPGHSG-AVNCVSWNPANP 501 (540)
Q Consensus 431 ~~~~~~~-~----~~~~~~~~~~i~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~ 501 (540)
.. .... . ......+ .. ..++++|.++...... +.+...|..++.....-..-.. ....+..+|++.
T Consensus 191 ~~-~v~~~~~~~~~~~~~~P-~~---i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~ 265 (381)
T COG3391 191 GN-SVVRGSVGSLVGVGTGP-AG---IAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGK 265 (381)
T ss_pred Cc-ceeccccccccccCCCC-ce---EEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCC
Confidence 65 2221 0 1111111 11 2237788866554443 5899999998887765221122 566788999997
Q ss_pred CEEEEEeCCCcEEEecCCCCCcccc
Q 009188 502 HMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 502 ~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
...+.-+..+.+.+-|..+..+...
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeee
Confidence 4444445568899999888776654
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.00 E-value=0.025 Score=57.53 Aligned_cols=185 Identities=10% Similarity=0.067 Sum_probs=102.8
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC-CCeE----------EEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ-KPVS----------CVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~----------~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
+..++.++.++.|.-.|..++ +.+..+.... ..+. .+++ .+..++.++.|+.+.-.|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG---k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG---KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC---ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEE
Confidence 446666777778887787665 2333222110 0111 1122 2346777888999999999999998
Q ss_pred EEeecCCCc-EEEEEEec--CCCEEEEEeC------CCcEEEEecCCceEEEeeccc-----------------------
Q 009188 312 HVYEKAGLG-LVSCGWHP--DRKWIFSGAN------DKSICMWELGGKELECWKGQR----------------------- 359 (540)
Q Consensus 312 ~~~~~~~~~-v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~----------------------- 359 (540)
......... -..+.-+| .+..++++.. +|.|..+|.++++..-.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 776532111 00111112 1234555542 688999999876654321110
Q ss_pred --------cceE-EEEEEccCCCEEEEEecC-----C-----------eEEEEECCCceEEEe----ecC-------Cce
Q 009188 360 --------TLKI-SDLEVTSDGKQIITMCKE-----S-----------ALLLLDREAKVERYI----EED-------QTI 403 (540)
Q Consensus 360 --------~~~v-~~i~~~~~~~~l~~~~~d-----~-----------~i~~~d~~~~~~~~~----~~~-------~~i 403 (540)
...+ ..+++++....++.+..+ + .|.-.|.++++.... .|+ ...
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 0011 134666666666666532 1 566677777663221 111 122
Q ss_pred eEEEEcCCCC---EEEEEecCCeEEEEEecCC
Q 009188 404 TSFSLSRDNK---FLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 404 ~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~ 432 (540)
.-+.+..+|+ .++.+..+|.+++.|-+++
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 2233334665 7888999999999999876
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00088 Score=66.24 Aligned_cols=144 Identities=13% Similarity=0.178 Sum_probs=102.8
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE-
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL- 352 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 352 (540)
|...|.--+++..+++++.|+.-|.+.+|+-..++....-. +....+..+..+++..++|+|+..|.|.++-++....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34446666777789999999999999999976665433222 2445666678888888899999999999998854211
Q ss_pred -----EEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCc------eEEEeecCCceeEEEEcCCCCEEEEEec
Q 009188 353 -----ECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK------VERYIEEDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 353 -----~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
......|...|++++|++++..+.+|...|+|....+... ..........|..+... ..++++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence 1122335678999999999999999999999999888772 14445566677666554 334444443
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.95 E-value=0.015 Score=54.01 Aligned_cols=226 Identities=14% Similarity=0.146 Sum_probs=123.0
Q ss_pred cCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEe------
Q 009188 241 HNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY------ 314 (540)
Q Consensus 241 p~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------ 314 (540)
..++.|+.|+.+| +.+++...... .... .+...|..+...++-+.+++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--PTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--ceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899999988 88888832221 1111 1233399999999877777765 599999998764433311
Q ss_pred --------ecCCCcEEEEE--EecCCCEEEEEeCCCcEEEEecCCc------eEEEeeccccceEEEEEEccCCCEEEEE
Q 009188 315 --------EKAGLGLVSCG--WHPDRKWIFSGANDKSICMWELGGK------ELECWKGQRTLKISDLEVTSDGKQIITM 378 (540)
Q Consensus 315 --------~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 378 (540)
......+...+ -...+...++......|.+|..... ....+.- ...+.+++|. ++.++.+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--p~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--PDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc--CCCcEEEEEe--CCEEEEE
Confidence 01122333333 1123334444445558888887542 1222222 2478888888 5667777
Q ss_pred ecCCeEEEEECCCce-EEEeec-------------CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC
Q 009188 379 CKESALLLLDREAKV-ERYIEE-------------DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444 (540)
Q Consensus 379 ~~d~~i~~~d~~~~~-~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 444 (540)
..++ ..+.|+.+.. ...... ..++..+.. +++.+|++ . +..-.+.|..+.......+.-...
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSA 230 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-e-cceEEEEcCCCCcCcccEEEcCCc
Confidence 6444 7777777544 222211 112333333 34455554 2 334444555443111122222222
Q ss_pred CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCC
Q 009188 445 SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGH 487 (540)
Q Consensus 445 ~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 487 (540)
+ ..+.+ ...|+++.+. +.|.||++.++++++.+...
T Consensus 231 p---~~~~~---~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 231 P---QSVAY---SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred h---hEEEE---ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1 11222 2246666655 45999999999998888743
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.94 E-value=0.021 Score=56.15 Aligned_cols=204 Identities=13% Similarity=0.179 Sum_probs=111.5
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc---ccceEEE-----EEEcc
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ---RTLKISD-----LEVTS 370 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~-----i~~~~ 370 (540)
.|.||+. .|+.+..+.-..+.+.++.|+.+. .|++...||.++++|+.+.. .+... ....|.. ..+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC
Confidence 4888884 676777666555899999998854 66677899999999997555 21111 1112211 22222
Q ss_pred CCCEEEEEecCCeEEEEECCCce-E-EEe-ecCC---------cee-EEEEcCCCCEEEEEecCCeEEEEEecCCceeee
Q 009188 371 DGKQIITMCKESALLLLDREAKV-E-RYI-EEDQ---------TIT-SFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVA 437 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~~~-~-~~~-~~~~---------~i~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 437 (540)
+| ++....++.+.+.+--... . ... .... ... ...++.+....+....++.+.+.+-... .
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----~ 211 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----K 211 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----c
Confidence 34 4444455555554432211 0 110 0000 000 0234444444444455555554443221 0
Q ss_pred EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCC-CCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 438 KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGH-SGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 438 ~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
... ..++ +..+..||+++++|.-..+|.+.+....-.+.+..+... ......+.|+-++. ++++- ...|.+.
T Consensus 212 ~i~-~~~~---i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da-v~l~~--~~~l~lv 284 (410)
T PF04841_consen 212 QID-SDGP---IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA-VVLSW--EDELLLV 284 (410)
T ss_pred ccc-CCCC---eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc-EEEEe--CCEEEEE
Confidence 111 1122 223334999999999999999999987666666666543 45677888887653 33333 3355555
Q ss_pred cCC
Q 009188 517 GLK 519 (540)
Q Consensus 517 ~~~ 519 (540)
...
T Consensus 285 g~~ 287 (410)
T PF04841_consen 285 GPD 287 (410)
T ss_pred CCC
Confidence 533
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.01 Score=55.26 Aligned_cols=220 Identities=13% Similarity=0.139 Sum_probs=127.1
Q ss_pred EECcCCCeEEE-eeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE-EEee----
Q 009188 283 SWSSDDQQLLT-CGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL-ECWK---- 356 (540)
Q Consensus 283 ~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~---- 356 (540)
.|.++...|+- --..+.|.-|+..+++. ..+.. ...+.++.....+..|+++.. .+.+++...+.. ....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 56666664443 34567788898876653 23322 223344444444445555443 255666644333 2211
Q ss_pred ccccceEEEEEEccCCCEEEEEec-----------CCeEEEEECCCceEEEeec-CCceeEEEEcCCCCEEEEEec-CCe
Q 009188 357 GQRTLKISDLEVTSDGKQIITMCK-----------ESALLLLDREAKVERYIEE-DQTITSFSLSRDNKFLLVNLL-NQE 423 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~-dg~ 423 (540)
.......++..+.|+|.+.+.... -|.++.+|........... -...+.++||||++.+..+.. .+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 222346778889999887765444 2457777765555444443 566789999999987777665 478
Q ss_pred EEEEEecC-C----cee-eeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC-cEEEEECCCCceeEeecCCCCCeEEEEe
Q 009188 424 IHLWNIEG-E----VKL-VAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS-QVYIWHRASCDLIGALPGHSGAVNCVSW 496 (540)
Q Consensus 424 i~i~d~~~-~----~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 496 (540)
|+-|++.. . ... ...+....+..-.+ ....+|.+.+++..+| .|.+|+.. |+++..+.-....+++++|
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~---~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM---AVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCce---EEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 88887752 1 010 11111111110011 1145667665555554 89999988 9999888877678888888
Q ss_pred CC-CCCCEEEEEeCC
Q 009188 497 NP-ANPHMLASASDD 510 (540)
Q Consensus 497 ~~-~~~~~l~s~~~D 510 (540)
-- +.+.+++|+...
T Consensus 263 gG~~~~~L~iTs~~~ 277 (307)
T COG3386 263 GGPDLNTLYITSARS 277 (307)
T ss_pred eCCCcCEEEEEecCC
Confidence 53 344455655544
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.0067 Score=59.63 Aligned_cols=144 Identities=9% Similarity=0.060 Sum_probs=80.4
Q ss_pred cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEE-ecCCce
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW-ELGGKE 351 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~ 351 (540)
....-.+..+.++|+|++++.+ .||.-.|+.....+.... +.....+|.+.+ .+|+-...+.|.++ +++...
T Consensus 29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence 3344557899999999999985 578888888544443322 233457888844 57777778889996 443222
Q ss_pred EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 352 LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 352 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
........ .+..+.. |..|...+.+ .|.+||..++.....-.-.+|..+.|++++++++..+.+ .+.+++..
T Consensus 102 ~k~i~~~~--~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 102 VKSIKLPF--SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp T-----SS---EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred ceEEcCCc--ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 11222111 2344433 7766665544 899999998874444444458999999999999998854 67776654
No 366
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=1.9e-05 Score=67.11 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=87.5
Q ss_pred EEEEecCCeEEEEECCCceEEEeecCCceeE-EEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeee
Q 009188 375 IITMCKESALLLLDREAKVERYIEEDQTITS-FSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (540)
+...+.+|.|.-++++......... ..+.. .....-+..+++|+.+|.|++|...........+......+ .....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i--~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE-RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI--DLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh-hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccc--eeccc
Confidence 3344566777766665543111110 00000 22233456799999999999998863322222222111111 11122
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC-CCeEEEEeCCCCCCEEEEE--eCCCcEEEecCCC
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS-GAVNCVSWNPANPHMLASA--SDDRTIRIWGLKD 520 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~--~~Dg~i~iw~~~~ 520 (540)
...++.+..+++.||.|+.|++.-.+.+.....|+ .++..+..+..+. +++++ |.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 24456689999999999999999999988888887 5666666665554 77777 8888888888865
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.83 E-value=0.0019 Score=48.88 Aligned_cols=100 Identities=10% Similarity=0.164 Sum_probs=66.9
Q ss_pred eEEEEECc---CC-CeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE
Q 009188 279 VSCVSWSS---DD-QQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC 354 (540)
Q Consensus 279 v~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 354 (540)
|+++++.. +| +.|++|+.|..|++|+ ..+.+..+... ..|++++-... ..|+.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 56666654 22 6899999999999998 44667777544 46777776655 579999999999999864332
Q ss_pred eeccccceEEEEEEcc---CC-CEEEEEecCCeEE
Q 009188 355 WKGQRTLKISDLEVTS---DG-KQIITMCKESALL 385 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~---~~-~~l~~~~~d~~i~ 385 (540)
|.......+.++.+.. || ..|++|-.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222233455555433 22 3677887877764
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.83 E-value=0.057 Score=56.16 Aligned_cols=289 Identities=12% Similarity=0.124 Sum_probs=151.7
Q ss_pred cCcEEEEEEecCC------CeEEEEeCCCcEEEEEeecCCceEEEEEecCC--CCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 231 TDEVWFLQFSHNG------KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH--QKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 231 ~~~V~~~~~sp~g------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
...|.|+.++|-| ++++.|..+..+.+--...+........+.+. ...|....|-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4689999999842 26888887776666554433222222212221 233555566667889999999999766
Q ss_pred E--ECCCCeEEEEe--ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEE-Ec-cCCCEEE
Q 009188 303 W--DVSSGNCLHVY--EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLE-VT-SDGKQII 376 (540)
Q Consensus 303 w--d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~-~~-~~~~~l~ 376 (540)
+ |..+|..-..- .-...++.--.|+..++.-+.+..|.-..+|.-+.+-+.....-. .+..++ |+ +...-.+
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k--ev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK--EVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH--HhhhhcccccccCCceE
Confidence 5 44555432221 222345555566665554444555665666665544333222211 121111 11 1222223
Q ss_pred EEecCCeEEEEECCC---ceEEEeecCCceeEEEEcCCCCEEEEEecCC--------------eEEEEEecCCceeeeE-
Q 009188 377 TMCKESALLLLDREA---KVERYIEEDQTITSFSLSRDNKFLLVNLLNQ--------------EIHLWNIEGEVKLVAK- 438 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~- 438 (540)
+....+.+.+.-+.. -..+..........+++.+....+.+.+... .++++|-++- .....
T Consensus 688 ~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf-~vl~~h 766 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF-EVLSSH 766 (1096)
T ss_pred EEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCce-eEEeec
Confidence 333445555544433 2244466667778888887555555544321 2455554433 11111
Q ss_pred -eeCCcCCeeEEEeeeccCCCcEEEEeeC----------CCcEEEEECCCCceeEeecC--CCCCeEEEEeCCCCCCEEE
Q 009188 439 -YKGHKRSRFVIRSCFGGLEQAFIASGSE----------DSQVYIWHRASCDLIGALPG--HSGAVNCVSWNPANPHMLA 505 (540)
Q Consensus 439 -~~~~~~~~~~i~~~~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~ 505 (540)
+.........+.+.+....+.+++.|.. .|.|.+|....++.+..... -.+.+.++.-- +| +++|
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ng-kllA 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NG-KLLA 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CC-eEEE
Confidence 1111122222323343333777777762 57888888776444433332 34667776543 34 3665
Q ss_pred EEeCCCcEEEecCCCCCcccc
Q 009188 506 SASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 506 s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
+- ...|++|++.+.+..+.
T Consensus 845 ~I--n~~vrLye~t~~~eLr~ 863 (1096)
T KOG1897|consen 845 GI--NQSVRLYEWTTERELRI 863 (1096)
T ss_pred ec--CcEEEEEEccccceehh
Confidence 54 55899999999865554
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.81 E-value=0.011 Score=56.32 Aligned_cols=179 Identities=16% Similarity=0.220 Sum_probs=109.6
Q ss_pred CCeEEEEeC----------CCcEEEEEeecC----CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC
Q 009188 243 GKYLASSSN----------DRSAIIWEVDLN----GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG 308 (540)
Q Consensus 243 g~~l~tg~~----------dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 308 (540)
..+++.|+. .|.|.++++... ...+..... ...++|++++-. ++. |+++ ..+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCc
Confidence 467887753 288999999863 233433333 347889999876 444 4444 3578999999887
Q ss_pred e-EEEEeec-CCCcEEEEEEecCCCEEEEEeCCCcEEEEec--CCceEEEee-ccccceEEEEEEccCCCEEEEEecCCe
Q 009188 309 N-CLHVYEK-AGLGLVSCGWHPDRKWIFSGANDKSICMWEL--GGKELECWK-GQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 309 ~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
+ ....-.. ....+.++... ++++++|+....+.++.. ....+.... ......++++.+-++++.++++..+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 7 4433222 23356666555 569999998888887754 333333322 223446888888867789999999999
Q ss_pred EEEEECCC--------c-e---EEEeecCCceeEE---EEcC--CCC------EEEEEecCCeEEEE
Q 009188 384 LLLLDREA--------K-V---ERYIEEDQTITSF---SLSR--DNK------FLLVNLLNQEIHLW 427 (540)
Q Consensus 384 i~~~d~~~--------~-~---~~~~~~~~~i~~~---~~s~--~~~------~l~~~~~dg~i~i~ 427 (540)
+.++.... . . .........|+++ ++.| .+. .++.++.+|.|...
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99987653 1 2 2333456677777 5555 222 47778888888743
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.79 E-value=0.038 Score=56.65 Aligned_cols=228 Identities=15% Similarity=0.075 Sum_probs=119.7
Q ss_pred CCCeEEEEeCC------CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC-C-----cEEEEECCCCe
Q 009188 242 NGKYLASSSND------RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE-E-----AVRRWDVSSGN 309 (540)
Q Consensus 242 ~g~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g-----~i~iwd~~~~~ 309 (540)
.+..++.||.+ ..+..+|...+ .+.....+. +...-.+++.. ++...++||.| | ++..||..+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 45566677666 35777877644 222222232 22223344444 56788888888 3 47788887776
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeCCC-----cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCC--
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-----SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES-- 382 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-- 382 (540)
-...-.-.......-.-.-+|...++|+.|| +|-.||..+.+...........-..-...-+|...++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 3331111111111111112677888999987 477888876655443333222222233344678888887543
Q ss_pred ----eEEEEECCCceEEEeec---CCceeEEEEcCCCCEEEEEecCCe-----EEEEEecCCcee-eeEeeCCcCCeeEE
Q 009188 383 ----ALLLLDREAKVERYIEE---DQTITSFSLSRDNKFLLVNLLNQE-----IHLWNIEGEVKL-VAKYKGHKRSRFVI 449 (540)
Q Consensus 383 ----~i~~~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~-~~~~~~~~~~~~~i 449 (540)
++..||..+..-..... ...-..+ -.-++.+.++|+.++. +..||..+..-. +......... .
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~---~ 516 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA---V 516 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc---c
Confidence 57788888876332221 1111112 2236777778877763 666777654211 1111111111 1
Q ss_pred EeeeccCCCcEEEEeeCCC-----cEEEEECCCC
Q 009188 450 RSCFGGLEQAFIASGSEDS-----QVYIWHRASC 478 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~ 478 (540)
.++ .-++...++|+.|| +|..||..+.
T Consensus 517 g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 517 GVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 111 23567778888776 4556665443
No 371
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.0058 Score=59.18 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=122.6
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC--------
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-------- 349 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------- 349 (540)
.|+.+.|.++..-|+++...|.|.||.....+... .....+-....+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48899999999999999999999999876543322 000011111111110 00111122333321
Q ss_pred -ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee----------cCCceeEEEEcC-----CC-
Q 009188 350 -KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE----------EDQTITSFSLSR-----DN- 412 (540)
Q Consensus 350 -~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----------~~~~i~~~~~s~-----~~- 412 (540)
...........++|++++.+ |=-++++|..+|.+.+.|++++...+.. ....++++.|+- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 11222333445689999997 5568999999999999999998744432 223577777752 33
Q ss_pred --CEEEEEecCCeEEEEEecC--Cceee----eEeeCCcCCeeEEEeeeccC------------------CCcEEEEeeC
Q 009188 413 --KFLLVNLLNQEIHLWNIEG--EVKLV----AKYKGHKRSRFVIRSCFGGL------------------EQAFIASGSE 466 (540)
Q Consensus 413 --~~l~~~~~dg~i~i~d~~~--~~~~~----~~~~~~~~~~~~i~~~~~~~------------------~~~~l~s~s~ 466 (540)
-.+++|+..|.+.+|.+.- +.... .....+...+..+....... .-.-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 5788999999999998752 11111 11112333333333221000 0112333444
Q ss_pred CCcEEEEECCCCceeEeecCCCCCeEEEEeC-----CCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 467 DSQVYIWHRASCDLIGALPGHSGAVNCVSWN-----PANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 467 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
+..++++...+.+..+......-....+.+- ..+ ..|++-..+|.|+++.+...+.+..
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEEE
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhhc
Confidence 6779999998888766554322233334442 233 4888999999999999998776654
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.77 E-value=0.053 Score=53.88 Aligned_cols=240 Identities=17% Similarity=0.224 Sum_probs=124.3
Q ss_pred cEEEEEEecCCCeEEEE-eCCC----cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC---------
Q 009188 233 EVWFLQFSHNGKYLASS-SNDR----SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE--------- 298 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg-~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--------- 298 (540)
.+....+||+|+++|.+ +..| .++++|+.++.. ....+.... ...+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--LPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--EEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--cCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34467899999998865 3333 489999986621 122222211 22399999988877765333
Q ss_pred --cEEEEECCCCeE--EEEeecCCCc--EEEEEEecCCCEEEEEeCCC----cEEEEecCCc-----eEEEeeccccceE
Q 009188 299 --AVRRWDVSSGNC--LHVYEKAGLG--LVSCGWHPDRKWIFSGANDK----SICMWELGGK-----ELECWKGQRTLKI 363 (540)
Q Consensus 299 --~i~iwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~-----~~~~~~~~~~~~v 363 (540)
.|+.|++.++.. ...+...... ...+..++|+++++.....+ .+.+.++... ....+........
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 378888877632 3444443333 56888999999887654332 4788888653 3333333332222
Q ss_pred EEEEEccCCCEEEEEe---cCCeEEEEECCCce-----EEEeecCCceeEEEEcCCCCEEEEEec-CC--eEEEEEecCC
Q 009188 364 SDLEVTSDGKQIITMC---KESALLLLDREAKV-----ERYIEEDQTITSFSLSRDNKFLLVNLL-NQ--EIHLWNIEGE 432 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~---~d~~i~~~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~ 432 (540)
..+... .+.+++... ..+.|...++.... .....+...+.-..+...+++|+.... ++ .|+++++...
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 333333 333444332 33567777776643 244445443333334444555555443 43 4778888722
Q ss_pred ceeeeEeeCCc-CCeeEEEeeeccCCCcE-EEE-ee--CCCcEEEEECCCCcee
Q 009188 433 VKLVAKYKGHK-RSRFVIRSCFGGLEQAF-IAS-GS--EDSQVYIWHRASCDLI 481 (540)
Q Consensus 433 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-l~s-~s--~dg~i~iwd~~~~~~~ 481 (540)
.......... +.+..+.. .+++.. .++ .| .-++++-||+.+++..
T Consensus 360 -~~~~~~~~p~~g~v~~~~~---~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 -KESREIPLPEAGSVSGVSG---DFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -EEEEEEESSSSSEEEEEES----TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred -cEEeeecCCcceEEeccCC---CCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 2333333222 22222221 223322 222 22 2347888888877653
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00019 Score=69.88 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=77.8
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeE-EEEECcCCCeEEEeeCCCcEEEEECCCC
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS-CVSWSSDDQQLLTCGVEEAVRRWDVSSG 308 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 308 (540)
-.-.|..+.|+|.-..+|++..+|.+.+..++ ...+.++.-|...++ +++|.|||+.||.|-.||+|++.|+++|
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 34578899999999999999999999999886 256677777777777 9999999999999999999999999999
Q ss_pred eEEEEee-cCCCcEEEEEEe
Q 009188 309 NCLHVYE-KAGLGLVSCGWH 327 (540)
Q Consensus 309 ~~~~~~~-~~~~~v~~~~~~ 327 (540)
..+..+. .....|.++.|.
T Consensus 95 ~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred Cceeccccccccchheeecc
Confidence 8776632 224467777775
No 374
>PHA02713 hypothetical protein; Provisional
Probab=97.73 E-value=0.0044 Score=63.53 Aligned_cols=198 Identities=7% Similarity=0.017 Sum_probs=105.7
Q ss_pred CCCEEEEEeCC------CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCC-----eEEEEECCCceEEEe
Q 009188 329 DRKWIFSGAND------KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES-----ALLLLDREAKVERYI 397 (540)
Q Consensus 329 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~ 397 (540)
++..+++|+.+ ..+..||..+........-....-......-+|+..+.|+.++ .+..||..+..-...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 56666777753 2477888876654333222211222223344677778887654 478899887763222
Q ss_pred ec-CCcee-EEEEcCCCCEEEEEecCC-----------------------eEEEEEecCCceeeeEeeCCcCCeeEEEee
Q 009188 398 EE-DQTIT-SFSLSRDNKFLLVNLLNQ-----------------------EIHLWNIEGEVKLVAKYKGHKRSRFVIRSC 452 (540)
Q Consensus 398 ~~-~~~i~-~~~~s~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 452 (540)
.. ..+.. ..+..-+++..+.|+.++ .+..||..++ .-. ....-...... ..
T Consensus 383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~-~v~~m~~~r~~--~~ 458 (557)
T PHA02713 383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWE-TLPNFWTGTIR--PG 458 (557)
T ss_pred CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eEe-ecCCCCccccc--Cc
Confidence 11 11111 111123677777777542 4667777654 111 11111000000 01
Q ss_pred eccCCCcEEEEeeCCC------cEEEEECCC---CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCC--cEEEecCCCC
Q 009188 453 FGGLEQAFIASGSEDS------QVYIWHRAS---CDLIGALPGHSGAVNCVSWNPANPHMLASASDDR--TIRIWGLKDL 521 (540)
Q Consensus 453 ~~~~~~~~l~s~s~dg------~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg--~i~iw~~~~~ 521 (540)
....++++.+.|+.++ .+..||..+ +..+..++........+.+ ++ .+.+.||.|| .+-.||+.+.
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehhhcCcccc
Confidence 1123567777776542 467899776 3444555443333444444 35 5999999998 7889999988
Q ss_pred Ccccc-ccCCCce
Q 009188 522 NVKRK-DCHSNGV 533 (540)
Q Consensus 522 ~~~~~-~~~~~~v 533 (540)
+-... ..|++..
T Consensus 536 ~W~~~~~~~~~~~ 548 (557)
T PHA02713 536 EWNHICHQHSNSY 548 (557)
T ss_pred cccchhhhcCCce
Confidence 87654 4444443
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.73 E-value=0.03 Score=54.17 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=58.1
Q ss_pred CceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCC---------------Cc-EEEEe
Q 009188 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE---------------QA-FIASG 464 (540)
Q Consensus 401 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~-~l~s~ 464 (540)
..+.+++.+|++++.++...-|.|.++|+... ..++.+++........-......+ .. +++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 45788999999999999888899999999887 677777776654322111111111 11 23445
Q ss_pred eCCCcEEEEECCCCceeEeec
Q 009188 465 SEDSQVYIWHRASCDLIGALP 485 (540)
Q Consensus 465 s~dg~i~iwd~~~~~~~~~~~ 485 (540)
-.-|.|-||.+++|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 567889999998888776665
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.026 Score=52.60 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=126.6
Q ss_pred EEEecCCCeE-EEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee
Q 009188 237 LQFSHNGKYL-ASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE 315 (540)
Q Consensus 237 ~~~sp~g~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 315 (540)
..|.++...| .+--..+.|.-|+...+. . ..+. +.+.+.++..-..+..|+++. .-+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~--~--~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK--K--RVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc--e--EEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEec
Confidence 3466666644 444556778888775432 1 1222 223344444444555555543 236677776665533322
Q ss_pred c-----CCCcEEEEEEecCCCEEEEEeC-----------CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 316 K-----AGLGLVSCGWHPDRKWIFSGAN-----------DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 316 ~-----~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
. .....+.+...|+|.+-++... -|.|+.+|. .+........+-...+.++||||++.++.+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 1 1235567788889876654433 133444444 3444444444344678899999998887776
Q ss_pred cC-CeEEEEECCC---ce------EEEeecCCceeEEEEcCCCCEEEEEecCC-eEEEEEecCCceeeeEeeCCcCCeeE
Q 009188 380 KE-SALLLLDREA---KV------ERYIEEDQTITSFSLSRDNKFLLVNLLNQ-EIHLWNIEGEVKLVAKYKGHKRSRFV 448 (540)
Q Consensus 380 ~d-~~i~~~d~~~---~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~ 448 (540)
.. +.|..++... .. .......+..-.++...+|.+.+++..+| .|..|+.. + +.+..+...... .
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~--~ 257 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKR--P 257 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-cEEEEEECCCCC--C
Confidence 54 7888887752 11 11112456677889999999887555554 89999988 3 555555554322 2
Q ss_pred EEeeeccCCCcEEEEeeC
Q 009188 449 IRSCFGGLEQAFIASGSE 466 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~s~ 466 (540)
-.++|.+++.+.|+..+.
T Consensus 258 t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 258 TNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ccceEeCCCcCEEEEEec
Confidence 345666776666555443
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.70 E-value=0.005 Score=62.96 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=120.0
Q ss_pred cEEEEECCCCeEEEEeec-CCCcEEEEEEecCCCEEEEEeCC-C-----cEEEEecCCceEEEeeccccceEEEEEEccC
Q 009188 299 AVRRWDVSSGNCLHVYEK-AGLGLVSCGWHPDRKWIFSGAND-K-----SICMWELGGKELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
.+..+|..++.-...-.. ....-.+++.. ++...++|+.| | ++..||..+.+......-...+...-...-+
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 577788777643322221 12222333333 45678889888 3 5788888776644432222222222223346
Q ss_pred CCEEEEEecCCe-----EEEEECCCceEEEee-cCCceeEEE-EcCCCCEEEEEecCC------eEEEEEecCCce-eee
Q 009188 372 GKQIITMCKESA-----LLLLDREAKVERYIE-EDQTITSFS-LSRDNKFLLVNLLNQ------EIHLWNIEGEVK-LVA 437 (540)
Q Consensus 372 ~~~l~~~~~d~~-----i~~~d~~~~~~~~~~-~~~~i~~~~-~s~~~~~l~~~~~dg------~i~i~d~~~~~~-~~~ 437 (540)
|...++|+.||. +-.||..+..-.... ........+ ..-+|...++|+.++ .+..||..++.- ...
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 888889998864 778888887733322 222222222 233777788887554 466777765411 111
Q ss_pred EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc-----EEEEECCCCcee--EeecCCCCCeEEEEeCCCCCCEEEEEeCC
Q 009188 438 KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ-----VYIWHRASCDLI--GALPGHSGAVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 438 ~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 510 (540)
....... ....+ .-++.+.+.|+.|+. |..||..+.+.. ..+....+.+....+ ++ .+.+.||.|
T Consensus 461 ~M~~~R~---~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~-~ly~vGG~~ 532 (571)
T KOG4441|consen 461 PMNTRRS---GFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GG-KLYAVGGFD 532 (571)
T ss_pred Ccccccc---cceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CC-EEEEEeccc
Confidence 1111111 11111 346788888888873 777887765433 333333333333333 23 588999988
Q ss_pred Cc-----EEEecCCCCCccc
Q 009188 511 RT-----IRIWGLKDLNVKR 525 (540)
Q Consensus 511 g~-----i~iw~~~~~~~~~ 525 (540)
|. |..||..+.+-..
T Consensus 533 ~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 533 GNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred CccccceeEEcCCCCCceee
Confidence 75 8888888765543
No 378
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.69 E-value=0.0066 Score=63.15 Aligned_cols=194 Identities=14% Similarity=0.155 Sum_probs=119.8
Q ss_pred CcCcEEEEEEec--CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc--------CCCeEEEe-eCCC
Q 009188 230 HTDEVWFLQFSH--NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS--------DDQQLLTC-GVEE 298 (540)
Q Consensus 230 h~~~V~~~~~sp--~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--------~~~~l~s~-~~dg 298 (540)
+.+...+++... |..+++=| ..|-|+.....+.......+..-.. ...-.|.| +.++|+.- ....
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg---~~igVFk~~~~~~l~f~t~i~~i~~-~~g~~~~P~k~mL~~~d~~mil~~~~~~~ 504 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRG---SKIGVFKNTDDDGLEFSTAISNIST-PKGKNFTPKKAMLHDQDRNMILLDPNNPN 504 (794)
T ss_pred CCCccceeEeeeccCceEEECC---CcEeEEECCCCCceeeeEEeccccc-CCCcccCcchhhhhccccceEeecCCCCC
Confidence 345566666664 34343333 2488887653333333322221100 00011333 33444443 3457
Q ss_pred cEEEEECCCCeEEEEeecCCCc-EEEEEEec-----CCCEEEEEeCCCcEEEEecCCc--eEEEe---eccccceEEEEE
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLG-LVSCGWHP-----DRKWIFSGANDKSICMWELGGK--ELECW---KGQRTLKISDLE 367 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~--~~~~~---~~~~~~~v~~i~ 367 (540)
.++-.|++.|+.+..+..+... |..++-.. +...-+.|-.+..+..||.+-. ++... .........|++
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 7999999999999999988644 55543221 2345677888889999999642 22211 112334577777
Q ss_pred EccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 368 VTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
-+.+| ++++|+.+|.|++||.-+.. ..+.+...+|..+..+.||+++++.+ +..+.+++.
T Consensus 585 Tt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 585 TTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 77665 68999999999999965443 33345688999999999999988776 566777775
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.69 E-value=9e-05 Score=44.70 Aligned_cols=38 Identities=45% Similarity=0.762 Sum_probs=34.1
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWE 259 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd 259 (540)
++...+.+|...|.++.|+|++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999995
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.68 E-value=0.0066 Score=62.10 Aligned_cols=182 Identities=11% Similarity=0.090 Sum_probs=104.3
Q ss_pred CcEEEEEEecCCCeEEEEe------CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC--------
Q 009188 232 DEVWFLQFSHNGKYLASSS------NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE-------- 297 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-------- 297 (540)
..+...++||+|+.+|... .|+.-.||-...++..... ..+. ..+.-.|+|+|..+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999999887765 3555566655544332222 2232 37788999999888777533
Q ss_pred ----CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEE---EecCCceEEE-----eeccccceEEE
Q 009188 298 ----EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICM---WELGGKELEC-----WKGQRTLKISD 365 (540)
Q Consensus 298 ----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~-----~~~~~~~~v~~ 365 (540)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|.+ -....+.... ........+.+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 223333443333222 2345799999999999988766 477777 3333443211 11222223578
Q ss_pred EEEccCCCEEEEEecCCe--EEEEECCCceEEEee---cCCceeEEEEcCCCCEEEEEecCCeE
Q 009188 366 LEVTSDGKQIITMCKESA--LLLLDREAKVERYIE---EDQTITSFSLSRDNKFLLVNLLNQEI 424 (540)
Q Consensus 366 i~~~~~~~~l~~~~~d~~--i~~~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i 424 (540)
+.|..++..+ ++..++. +...++......... ...++.+++-+++ .+++...++.+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9999998855 4444433 444445544322212 2445556665552 34455555533
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00029 Score=68.67 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=73.9
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEE-EEEEecCCCEEEEEeCCCcEEEEecCCceEEEe
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLV-SCGWHPDRKWIFSGANDKSICMWELGGKELECW 355 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 355 (540)
..+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..++..++ +++|.|||+.|++|-.||+|++.|+.++....-
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457789999999999999999999999987 777888887777777 999999999999999999999999976544332
Q ss_pred -eccccceEEEEEEc
Q 009188 356 -KGQRTLKISDLEVT 369 (540)
Q Consensus 356 -~~~~~~~v~~i~~~ 369 (540)
.......|.++.|+
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 22222355555554
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.65 E-value=0.0076 Score=61.85 Aligned_cols=197 Identities=11% Similarity=0.054 Sum_probs=102.7
Q ss_pred CCCeEEEeeCC------CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC-----cEEEEecCCceEEEe
Q 009188 287 DDQQLLTCGVE------EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-----SICMWELGGKELECW 355 (540)
Q Consensus 287 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~ 355 (540)
++...+.||.+ ..+..||..++.-...-.-....-......-+|...+.||.++ .+..||..+......
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 56777777753 3477888877653221111111111111223677777888764 488899877655443
Q ss_pred eccccceEEEEEEccCCCEEEEEecC-----------------------CeEEEEECCCceEEEeec--CCceeEEEEcC
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMCKE-----------------------SALLLLDREAKVERYIEE--DQTITSFSLSR 410 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~~d-----------------------~~i~~~d~~~~~~~~~~~--~~~i~~~~~s~ 410 (540)
..............-+|...+.|+.+ ..+..||..+..-..... ......-...-
T Consensus 383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~ 462 (557)
T PHA02713 383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH 462 (557)
T ss_pred CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE
Confidence 32221111111223467777777754 247778888766322221 11111122233
Q ss_pred CCCEEEEEecC------CeEEEEEecC-C-ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC--cEEEEECCCCce
Q 009188 411 DNKFLLVNLLN------QEIHLWNIEG-E-VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS--QVYIWHRASCDL 480 (540)
Q Consensus 411 ~~~~l~~~~~d------g~i~i~d~~~-~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~ 480 (540)
+++..++|+.+ ..+..||..+ + -..+..+...... .... ..++++.++|+.|| .+..||..+.+-
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~---~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA---LHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc---ceeE--EECCEEEEEeeecceeehhhcCcccccc
Confidence 56777777654 2466788775 3 2222222221111 1111 23778889999888 777788777665
Q ss_pred eEeecCCC
Q 009188 481 IGALPGHS 488 (540)
Q Consensus 481 ~~~~~~h~ 488 (540)
...-..|.
T Consensus 538 ~~~~~~~~ 545 (557)
T PHA02713 538 NHICHQHS 545 (557)
T ss_pred cchhhhcC
Confidence 44444444
No 383
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.64 E-value=0.097 Score=53.30 Aligned_cols=147 Identities=12% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEec--CCCC--CeEEEEECcCCCeEEEee------CCCcEEEEECCCCeEEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLS--GHQK--PVSCVSWSSDDQQLLTCG------VEEAVRRWDVSSGNCLH 312 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~h~~--~v~~l~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~ 312 (540)
+..++.++.|+.+.-.|..++. .+.... .+.. .+.+--.-.++ .++.+. .+|.|..+|.++|+.+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk---~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGK---VVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCC---EEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeE
Confidence 3457777888888888887663 222222 1111 11110000134 444443 26889999999999887
Q ss_pred EeecCCC-------------------------------cEE-EEEEecCCCEEEEEeCC-----C-----------cEEE
Q 009188 313 VYEKAGL-------------------------------GLV-SCGWHPDRKWIFSGAND-----K-----------SICM 344 (540)
Q Consensus 313 ~~~~~~~-------------------------------~v~-~~~~~~~~~~l~~~~~d-----g-----------~i~i 344 (540)
.+..-.. .++ .+++.+...+++.+..+ + .|.-
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 196 RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred eccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 6543211 111 23566666666665522 2 5667
Q ss_pred EecCCceEEEeeccccce---------EEEEEEccCCC---EEEEEecCCeEEEEECCCce
Q 009188 345 WELGGKELECWKGQRTLK---------ISDLEVTSDGK---QIITMCKESALLLLDREAKV 393 (540)
Q Consensus 345 wd~~~~~~~~~~~~~~~~---------v~~i~~~~~~~---~l~~~~~d~~i~~~d~~~~~ 393 (540)
.|++++++.-........ ..-+.+..+|+ .++.+.++|.+++.|..+++
T Consensus 276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 788887776443321111 12222334666 67789999999999998765
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0017 Score=67.44 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=77.6
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL 321 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 321 (540)
.+..++.|+..|.+...|+..+ ......-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..++.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 4557888998899998887643 22222223346799999999999999999999999999999999999988777665
Q ss_pred EEE---EEecCCCEEEEEeCCCcEEEEec
Q 009188 322 VSC---GWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 322 ~~~---~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
+.+ .+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 554 44456667888888776 5654
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.62 E-value=0.00018 Score=43.31 Aligned_cols=39 Identities=46% Similarity=0.848 Sum_probs=33.7
Q ss_pred CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 478 CDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 478 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
++++..+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 345667778899999999999884 999999999999996
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.013 Score=51.97 Aligned_cols=186 Identities=14% Similarity=0.124 Sum_probs=114.8
Q ss_pred EEecCCCeEEEEeCC-----CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC----------------
Q 009188 238 QFSHNGKYLASSSND-----RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV---------------- 296 (540)
Q Consensus 238 ~~sp~g~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---------------- 296 (540)
.|||||.+|...-.| |.|-|||.. ..+...-.+..|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 699999999876444 789999987 455667778888888899999999999988642
Q ss_pred --CCcEEEEECCCCeEEEEee----cCCCcEEEEEEecCCCEEEEEeCCCc-------EEEEecCCceEEEeec------
Q 009188 297 --EEAVRRWDVSSGNCLHVYE----KAGLGLVSCGWHPDRKWIFSGANDKS-------ICMWELGGKELECWKG------ 357 (540)
Q Consensus 297 --dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~------ 357 (540)
.-++.+.|..+|+.+.+.. .+...|..++..+||...+.+-..|. |-.+ ..++.+..+..
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec-cCCCcCcccCCCHHHHH
Confidence 1134444545555543322 23456788888888876665544331 1111 11222211111
Q ss_pred cccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 358 QRTLKISDLEVTSDGKQIITMC-KESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
.....|-+++.+.+...++..+ ..+...+||..++.......-.....++- ...-+++.+.+|.+.++.
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccccccee--ccCceEEecCCceEEecc
Confidence 1123577888886666666555 45567899999887554443333333333 344466777788887774
No 387
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.48 E-value=0.12 Score=50.28 Aligned_cols=273 Identities=12% Similarity=0.078 Sum_probs=147.9
Q ss_pred CCeEEEEeCCCcEEEEEeecCCce-EEEEEecCCCCCeEEEEECc----CCCeEEEeeCCCcEEEEECCC--Ce------
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGV-TLKHKLSGHQKPVSCVSWSS----DDQQLLTCGVEEAVRRWDVSS--GN------ 309 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~----~~~~l~s~~~dg~i~iwd~~~--~~------ 309 (540)
...+++||..|.++||+...++.. .-...-..-..+|..+..-. .....++.-.-..+.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 458999999999999998543211 11111122356788777532 222333335667788887732 11
Q ss_pred -EEEEeecC--CCcEEEEEEec----C-CCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 310 -CLHVYEKA--GLGLVSCGWHP----D-RKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 310 -~~~~~~~~--~~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
.+.....| ......+++-| . ..++.+-+.||.+.+++-+.......... ..-...+.+.+....+++++.+
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence 12222223 22334444444 2 35788899999999999877665555544 2345678889999999999998
Q ss_pred CeEEEEECCCce------------------------EEEeecCCceeEEE---EcCCCCEEEEEecCCeEEEEEecCCce
Q 009188 382 SALLLLDREAKV------------------------ERYIEEDQTITSFS---LSRDNKFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 382 ~~i~~~d~~~~~------------------------~~~~~~~~~i~~~~---~s~~~~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
..+..|....-. .....-...+..+. ++.....+++-+ ...+...+-.+..+
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G~l~ 274 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNGSLR 274 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCCeEE
Confidence 888888642210 01111223333333 332333333333 34455555544333
Q ss_pred eeeEeeCCcCCeeEEEee-eccCC-CcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeC--CCCCCEEEEEeCC
Q 009188 435 LVAKYKGHKRSRFVIRSC-FGGLE-QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN--PANPHMLASASDD 510 (540)
Q Consensus 435 ~~~~~~~~~~~~~~i~~~-~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~~~~l~s~~~D 510 (540)
..+++............. ...++ +..++.++.++.+.||.-.+ ++-.-+....+| ++... ++-+.+|++-+.+
T Consensus 275 ~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~ 351 (418)
T PF14727_consen 275 FQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDE 351 (418)
T ss_pred EEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccCCCCceEEEEcCC
Confidence 333443222211111110 01112 23588899999999996433 332222222333 33321 2223489999999
Q ss_pred CcEEEecCCC
Q 009188 511 RTIRIWGLKD 520 (540)
Q Consensus 511 g~i~iw~~~~ 520 (540)
|.+.+-=+.|
T Consensus 352 G~L~v~YLGT 361 (418)
T PF14727_consen 352 GQLSVSYLGT 361 (418)
T ss_pred CcEEEEEeCC
Confidence 9999876655
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.065 Score=48.09 Aligned_cols=161 Identities=8% Similarity=0.140 Sum_probs=110.3
Q ss_pred ecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecC-CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc
Q 009188 272 LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA-GLGLVSCGWHPDRKWIFSGANDKSICMWELGGK 350 (540)
Q Consensus 272 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 350 (540)
..+-...+.++.|+|+.+.|++......-.||=..+|+.++++.-. -...-.+.+..+|.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455566999999999999999998888888877889999887643 234456788888877777778888888877432
Q ss_pred -eEEEe---------eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee------------cCCceeEEEE
Q 009188 351 -ELECW---------KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE------------EDQTITSFSL 408 (540)
Q Consensus 351 -~~~~~---------~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------------~~~~i~~~~~ 408 (540)
..... ....+.....++|+|....+..+-.-.-+.+|........... .-..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 11111 1122446778999999999999888777777765543211110 1234667778
Q ss_pred cCC-CCEEEEEecCCeEEEEEecCC
Q 009188 409 SRD-NKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 409 s~~-~~~l~~~~~dg~i~i~d~~~~ 432 (540)
++. +..++.+..++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 764 455666666777777777654
No 389
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.022 Score=43.22 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=65.9
Q ss_pred EEEEEEec---CC-CEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEE
Q 009188 321 LVSCGWHP---DR-KWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY 396 (540)
Q Consensus 321 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 396 (540)
|+++++.. +| +.|++|+.|..|++|+-.. +..... ....+++++-... ..++.+..+|+|-+|+.....-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee
Confidence 55666655 22 5899999999999998542 222222 2236777777665 679999999999999886655443
Q ss_pred eecCCceeEEEEcC-C--C-CEEEEEecCCeEE
Q 009188 397 IEEDQTITSFSLSR-D--N-KFLLVNLLNQEIH 425 (540)
Q Consensus 397 ~~~~~~i~~~~~s~-~--~-~~l~~~~~dg~i~ 425 (540)
.. +..++++.+.. + | .-|++|-.+|.|-
T Consensus 78 KS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33 33355555433 3 3 4688888888764
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.37 E-value=0.077 Score=45.79 Aligned_cols=214 Identities=12% Similarity=0.095 Sum_probs=118.9
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCC--CEEEEEe-CCCcEEEEecCCc--eEEEe-----eccc
Q 009188 290 QLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR--KWIFSGA-NDKSICMWELGGK--ELECW-----KGQR 359 (540)
Q Consensus 290 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-~dg~i~iwd~~~~--~~~~~-----~~~~ 359 (540)
++.+-=..|.|.-||+.+.+..+.- ....+..++.+--.+ +.++++. ..-.|.-||.... .+... ....
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 3333334566777888775543322 222223333332222 1233333 2223455664221 11111 0112
Q ss_pred cceEEEEEEccCCCEEEEEec---------CCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEE-EecCCeEEEEEe
Q 009188 360 TLKISDLEVTSDGKQIITMCK---------ESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLV-NLLNQEIHLWNI 429 (540)
Q Consensus 360 ~~~v~~i~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~ 429 (540)
..+.++-..+|+|+++.-.-. .|.++.|-...........-.--+.++|+.+.+.+.. -+.+-+|.-||.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 345677788999998543222 3556666666655555555555678999987765554 455667877773
Q ss_pred --cCC----ceeeeEeeC------CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeC
Q 009188 430 --EGE----VKLVAKYKG------HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN 497 (540)
Q Consensus 430 --~~~----~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 497 (540)
.++ .+.+..+.. .......+ ..+|++.++.-..|+|...|..+|+.+.+++-....|++++|-
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 332 122222221 11111122 4477888888888999999999999999998888999999996
Q ss_pred CCC-CCEEEEEeC
Q 009188 498 PAN-PHMLASASD 509 (540)
Q Consensus 498 ~~~-~~~l~s~~~ 509 (540)
-.+ .-+.+|+..
T Consensus 263 Gkn~d~~yvT~aa 275 (310)
T KOG4499|consen 263 GKNLDILYVTTAA 275 (310)
T ss_pred CCCccEEEEEehh
Confidence 432 224444443
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.26 E-value=0.027 Score=57.72 Aligned_cols=148 Identities=13% Similarity=0.175 Sum_probs=89.3
Q ss_pred CCCCeEEEEECcCCCeEEEee------CCC--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-------
Q 009188 275 HQKPVSCVSWSSDDQQLLTCG------VEE--AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND------- 339 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 339 (540)
....+.+.+++|+|+.++... .|+ .+.+++. .+.. ..+.. ....+.-.|+|+|..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678899999999888765 244 4555554 3333 33322 2237778999998877766432
Q ss_pred -----CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEE---EECCCceEEE------ee-cCCcee
Q 009188 340 -----KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLL---LDREAKVERY------IE-EDQTIT 404 (540)
Q Consensus 340 -----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~---~d~~~~~~~~------~~-~~~~i~ 404 (540)
+.+.+.+++++.... .....|..+.|+|||..++... ++.|++ -....+.... .. ....+.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 233333444433322 2234699999999999998876 467776 4433333222 12 233468
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 405 SFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 405 ~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
++.|.+++.++ ++..++...+|.+.
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEe
Confidence 89999999855 55555544455443
No 392
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0015 Score=60.37 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=88.1
Q ss_pred chHH-HHHHHHHHHhhcChHHHHHHHHHhcCCccc-C------hHHHHHHHHHhcCChHHHHHHhcccCCCChhhHhhHH
Q 009188 21 KRVE-FVRIIAKALYSLGYTKSGAHLEEESGIPLH-S------SMVNLFTQQILDGHWDESLATLSKIGLVDESVVKSAS 92 (540)
Q Consensus 21 ~~~e-~~~li~q~L~e~g~~~s~~~L~~Es~~~~~-~------~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~ 92 (540)
+..+ |...|..|+...|..+.+..|-+|+|.... . .++.++.+++..|+-..|++.+..-..........+.
T Consensus 114 ~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE 193 (394)
T KOG2817|consen 114 DTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLE 193 (394)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHH
Confidence 3444 489999999999999999999999999865 2 2688889999999999999888875433333455688
Q ss_pred HHHhhhhhhhcccccchh--HHHHHHHhhccCCCCCc
Q 009188 93 FLILEQKFFELLDAEKVM--DALKTLRAEIAPLCIKN 127 (540)
Q Consensus 93 ~~l~~~~~lell~~~~~~--~a~~~l~~~~~~~~~~~ 127 (540)
|.+..+.|++++..|... +|++..|+.++|+....
T Consensus 194 ~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 194 FKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 999999999999987777 99999999999987544
No 393
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.19 E-value=0.0046 Score=64.27 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=83.8
Q ss_pred cCCeEEEEECCCce--EEEeecCCceeEEEEcCC-------CCEEEEEecCCeEEEEEecCCc-eeeeEeeCCcCCeeEE
Q 009188 380 KESALLLLDREAKV--ERYIEEDQTITSFSLSRD-------NKFLLVNLLNQEIHLWNIEGEV-KLVAKYKGHKRSRFVI 449 (540)
Q Consensus 380 ~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~-------~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~i 449 (540)
....++-.|+..++ ..+..+. .+.-..+.|+ ..-.++|-.++.+..||.+-.. +++..-...-......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 45778888888776 2222222 2223344443 3456778889999999998642 2332111011111122
Q ss_pred EeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 450 RSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.+.. .....+||.|+.+|.||+||.-..+.-..+++-..+|.+|..+.||..+|+|| +..+.+++.
T Consensus 581 s~~a-Tt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFA-TTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred eEEE-ecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 2333 44556899999999999999544333445667789999999999998666665 446777775
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.017 Score=55.62 Aligned_cols=141 Identities=17% Similarity=0.205 Sum_probs=98.4
Q ss_pred CCCeEE-EeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC-------EEEEEeCCCcEEEEecCC--ceEEEee
Q 009188 287 DDQQLL-TCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK-------WIFSGANDKSICMWELGG--KELECWK 356 (540)
Q Consensus 287 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~--~~~~~~~ 356 (540)
+.++|+ ++.....++-.|++.|+.+..++.+.. |.-+.+.|+.+ .-+.|-.|..|.-||.+- .....+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 445556788899999999999988875 66677777543 235677788999999863 2122222
Q ss_pred cc----ccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 357 GQ----RTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 357 ~~----~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
.. ......|++-..+| ++++|+.+|.|++||.-... ..+.+...+|..+..+.+|+++++.+ +..+.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 21 12245566655554 68899999999999984433 45566788999999999999887665 6677777764
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.03 E-value=0.28 Score=45.61 Aligned_cols=273 Identities=10% Similarity=0.046 Sum_probs=125.7
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecC-CceEEEEEecCC--CCCeEEEEECcCCCeEEEeeCCCcEEEEECCC
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN-GGVTLKHKLSGH--QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS 307 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 307 (540)
...+..|.|..+..-+++|. .+. |+....+ ........-... .-...+|.|..+ ..++ ++..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCC
Confidence 45889999986565566654 453 3444333 223322211111 123567777543 3444 44455 33444444
Q ss_pred CeEEEEee---cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeE
Q 009188 308 GNCLHVYE---KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 308 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
|+.-..+. .-......+....++...+ .+..|.|+.=.=.+..-..........+..+..++||++++++......
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 54333322 1122334444444443333 4455655433223333344444445678889999999988888777777
Q ss_pred EEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeE-eeCC-cCCeeEEEeeeccCCCcE
Q 009188 385 LLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAK-YKGH-KRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 385 ~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~ 460 (540)
.-||..... .........|.++.|.|++...+++ ..|.|+.=+.......... .... ......+...+ .+++..
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~-~~~~~~ 246 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY-RPPNEI 246 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE-SSSS-E
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe-cCCCCE
Confidence 788876543 3344467899999999998877755 7888888773222111111 1112 12222344445 455555
Q ss_pred EEEeeCCCcEEEEECCCCceeEeec---CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 461 IASGSEDSQVYIWHRASCDLIGALP---GHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
.++|+ .|.+. .....|+.-..-+ .-.+.++.+.|.+.+ .-...|.+|.|.-|
T Consensus 247 wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 247 WAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--KGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETT--EEEEE-STTEEEEE
T ss_pred EEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCC--ceEEECCCcEEEEe
Confidence 55554 44443 3444454433332 334568888887554 45667788887655
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.17 Score=45.51 Aligned_cols=165 Identities=18% Similarity=0.269 Sum_probs=100.4
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
+.|-.+.|.++.|+|+.+.|++......-.||=.. .+..-....+.+. ...-.+.+..+|.+.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 45566679999999999999888877766666433 3333222333332 234567788788888877778888888776
Q ss_pred CCeEEEEee----------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce--EE--Eee------ccccceEEEE
Q 009188 307 SGNCLHVYE----------KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE--LE--CWK------GQRTLKISDL 366 (540)
Q Consensus 307 ~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~--~~~------~~~~~~v~~i 366 (540)
.+..+.... ......-.++|+|.+..|+.+-+..-+.||.+.... +. ... ...-..+.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 553222111 124567889999988888888877777777664322 10 000 0111245666
Q ss_pred EEccCCCE-EEEEecCCeEEEEECCCce
Q 009188 367 EVTSDGKQ-IITMCKESALLLLDREAKV 393 (540)
Q Consensus 367 ~~~~~~~~-l~~~~~d~~i~~~d~~~~~ 393 (540)
.|++.... ++.+..++.+.-.|.....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCCe
Confidence 77754444 4444455555556655543
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.24 Score=44.23 Aligned_cols=222 Identities=10% Similarity=0.071 Sum_probs=113.9
Q ss_pred EEEECcCC-CeEEEeeCCCc-EEEEECCCCeEEEEeecCCCc--EEEEEEecCCCEEEEEeCC-----CcEEEEecCCc-
Q 009188 281 CVSWSSDD-QQLLTCGVEEA-VRRWDVSSGNCLHVYEKAGLG--LVSCGWHPDRKWIFSGAND-----KSICMWELGGK- 350 (540)
Q Consensus 281 ~l~~s~~~-~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~- 350 (540)
.|+|+|.. .-++.+-.-|+ ..++|..+.+...++...... .-.-.|+|||.+|++.-.| |.|-+||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 36777743 34555555555 677888877766555432211 2233699999999987554 67999998642
Q ss_pred eEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEE-ECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 351 ELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLL-DREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 351 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
........+.-....+.+.+||+.++.+.. -|..- |.... .+-.-+..-.+.+.|.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~---------------------~lNldsMePSlvlld~ 208 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRT---------------------ELNLDSMEPSLVLLDA 208 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCcc---------------------ccchhhcCccEEEEec
Confidence 222233344446678889999998887642 22221 11100 0111112223334443
Q ss_pred cCCceeeeEeeCC-cCCeeEEEeeeccCCCcEEEEeeCCCc-----EEEEECCCCceeEeecC-------CCCCeEEEEe
Q 009188 430 EGEVKLVAKYKGH-KRSRFVIRSCFGGLEQAFIASGSEDSQ-----VYIWHRASCDLIGALPG-------HSGAVNCVSW 496 (540)
Q Consensus 430 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~-------h~~~v~~l~~ 496 (540)
.++ .++.+..-. ......++.....++|..++.+-..|. --+=....++++.-+.- ....|-+++.
T Consensus 209 atG-~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~ 287 (366)
T COG3490 209 ATG-NLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAA 287 (366)
T ss_pred ccc-chhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheee
Confidence 322 222221111 112223444444556555554433221 00111123333333321 2345778888
Q ss_pred CCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 497 NPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 497 ~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
+.+...+.+|+-..+..-+||..+|.+...
T Consensus 288 n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 288 NRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 766653444444555678899999988764
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0075 Score=57.98 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=86.4
Q ss_pred EEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCE-------EEEEecCCeEEEEEecCCce-eeeEeeCCcCCee
Q 009188 377 TMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKF-------LLVNLLNQEIHLWNIEGEVK-LVAKYKGHKRSRF 447 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~-------l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~ 447 (540)
.+.....++-.|+..+. ...-.....|+-+.+.|+.+. -++|-.+..|.-||.+-... .+..-.++.-...
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k 430 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTK 430 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccc
Confidence 33444566777777665 222223333777777776532 34566788999999885433 2222223222111
Q ss_pred EEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 448 VIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 448 ~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.--.|+......+|++||.+|.|++||.-..+.-..+++-..+|..|..+.+|..+|+|| +..+.+-++
T Consensus 431 ~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 431 NNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred cccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 111233345566899999999999999733333456788889999999999998555555 445555543
No 399
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.28 Score=44.09 Aligned_cols=192 Identities=11% Similarity=0.103 Sum_probs=113.1
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC---
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG--- 308 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--- 308 (540)
+-+..+.++ +++...+..+.-++|.|+...........+.- .+--.++.. .|++...+..|.-+-+.|+.+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 445566665 55777777777899999987665555444332 233444444 4778888876666778888764
Q ss_pred eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc--cceEEEEEEccCCCEEEEEecCCeEEE
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR--TLKISDLEVTSDGKQIITMCKESALLL 386 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~i~~ 386 (540)
.....+...+.....++.+ |++-+.+..|+-+.+-|+.......+.... ...+.++..+++..+++. .+.-+.+
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y~egvli 237 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--YDEGVLI 237 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--cccceEE
Confidence 3344444444444566665 778888889999999999654333322221 125666666665544443 3444666
Q ss_pred EECCCce-EEEee--cCCceeEE-EEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 387 LDREAKV-ERYIE--EDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 387 ~d~~~~~-~~~~~--~~~~i~~~-~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
.|..+.. ...+. ....+.++ .+.-.+++..+...+..+.+.|+.+.
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 6666544 11111 12222222 23335666666666666777777654
No 400
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.87 E-value=0.78 Score=48.26 Aligned_cols=241 Identities=14% Similarity=0.099 Sum_probs=129.4
Q ss_pred CcEEEEEEecC----CCeEEEEe---CCCcEEEEEeecCCceEEEEEecCCCCCeEEEE--ECcC-CCeEEEeeCCCcEE
Q 009188 232 DEVWFLQFSHN----GKYLASSS---NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS--WSSD-DQQLLTCGVEEAVR 301 (540)
Q Consensus 232 ~~V~~~~~sp~----g~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~~-~~~l~s~~~dg~i~ 301 (540)
++|..++.-.. +..++|++ .||+++|..-..+-...-...+.| -..++.+. +.++ .++|+.+- -+.-+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eTr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISETR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccceE
Confidence 57777776542 23566654 489999986433211122233444 45566776 4432 22555443 33344
Q ss_pred EEECCCCeEEE-EeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 302 RWDVSSGNCLH-VYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 302 iwd~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
+..+. ++... ...+.......+..+. .++.|+-... ..|++++-. +....|.... .++....+.+...++.++
T Consensus 432 vl~i~-~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p~--~~ti~~~~~n~sqVvvA~ 506 (1096)
T KOG1897|consen 432 VLNIS-EEVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPPG--KITIGVVSANASQVVVAG 506 (1096)
T ss_pred EEEEc-cceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCCC--ceEEEEEeecceEEEEec
Confidence 55542 22111 1112222222333332 3334333332 346776654 3333343333 455555666667888888
Q ss_pred cCCeEEEEECCCce---EEEeecCCceeEEEEcCCC------CEEEEEecCCeEEEEEecCCceeeeE--eeCCcCCeeE
Q 009188 380 KESALLLLDREAKV---ERYIEEDQTITSFSLSRDN------KFLLVNLLNQEIHLWNIEGEVKLVAK--YKGHKRSRFV 448 (540)
Q Consensus 380 ~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~ 448 (540)
.++.+...++.... .........|.|+.++|-| +++++|..+..+.+.-.-.....+.. +.+..-+...
T Consensus 507 ~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSI 586 (1096)
T KOG1897|consen 507 GGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSI 586 (1096)
T ss_pred CccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchhe
Confidence 88888887776654 3334456789999999842 37888887776655444322122222 3333334444
Q ss_pred EEeeeccCCCcEEEEeeCCCcEEEE--ECCCCce
Q 009188 449 IRSCFGGLEQAFIASGSEDSQVYIW--HRASCDL 480 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~ 480 (540)
+...+ ..+..+|.++..||.+.-| |..+|..
T Consensus 587 l~~~~-e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 587 LLTTF-EGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eeEEe-eccceEEEEEcCCceEEEEEEEcccceE
Confidence 44444 4557899999999988766 4455543
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.86 E-value=0.32 Score=43.66 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=112.6
Q ss_pred EEEEeecCCC-cEEEEEEecCCCEEEEEeCCC--cEEEEecCCceEEEeeccc-cceEEEEEEccCCCEEEEEecCCeEE
Q 009188 310 CLHVYEKAGL-GLVSCGWHPDRKWIFSGANDK--SICMWELGGKELECWKGQR-TLKISDLEVTSDGKQIITMCKESALL 385 (540)
Q Consensus 310 ~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~i~ 385 (540)
.+..+..... -...+.|..+|..+-+.+.-| .|+.+|+.+++......-. ..--..++.. +++.....-.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence 3455533332 344677777887777877766 7999999887665433222 2122333333 334445556889999
Q ss_pred EEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC--CeeEEEeeeccCCCcEEE
Q 009188 386 LLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR--SRFVIRSCFGGLEQAFIA 462 (540)
Q Consensus 386 ~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~ 462 (540)
+||..+-. .......+.-..++ .+++.|+.+.....++++|..+- .....+..... ++..+.-.-+ -+|.+.|
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~-i~G~IyA 189 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEY-INGKIYA 189 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEE-ETTEEEE
T ss_pred EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEE-EcCEEEE
Confidence 99998754 33344444555555 57778888887889999997764 44444443322 1111211111 2566666
Q ss_pred EeeCCCcEEEEECCCCceeEeecC------------C---CCCeEEEEeCCCCCCEEEEE
Q 009188 463 SGSEDSQVYIWHRASCDLIGALPG------------H---SGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 463 s~s~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~l~~~~~~~~~l~s~ 507 (540)
-.=....|...|..+|+.+..+.- + ..-.+.+||.|....+++||
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666667788889999998876521 1 34579999999887777776
No 402
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.78 E-value=0.53 Score=49.49 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEec
Q 009188 318 GLGLVSCGWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 318 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
...|..+.++|+|.+++..|..| |.|..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 34788899999999999888866 444444
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.70 E-value=0.54 Score=49.90 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=44.5
Q ss_pred CCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE-------------EEEEEec--CCCEEEEEeC----------CCcE
Q 009188 288 DQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL-------------VSCGWHP--DRKWIFSGAN----------DKSI 342 (540)
Q Consensus 288 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------dg~i 342 (540)
+..++.++.|+.+.-.|.++|+.+..+.... .+ ..+.-.| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 4578888899999999999999987764321 11 0111112 2345666643 6889
Q ss_pred EEEecCCceEEEe
Q 009188 343 CMWELGGKELECW 355 (540)
Q Consensus 343 ~iwd~~~~~~~~~ 355 (540)
+-+|.+++++.-.
T Consensus 339 ~A~Da~TGkl~W~ 351 (764)
T TIGR03074 339 RAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCcEeeE
Confidence 9999988876543
No 404
>PRK10115 protease 2; Provisional
Probab=96.63 E-value=1.2 Score=47.13 Aligned_cols=238 Identities=11% Similarity=0.100 Sum_probs=117.5
Q ss_pred CeEEEEECcCCCeEEEeeCC-----CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC------CcEEEEe
Q 009188 278 PVSCVSWSSDDQQLLTCGVE-----EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND------KSICMWE 346 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd 346 (540)
.+..+.|+|+|++|+.+... ..|++-|+.+|..+...-... . ..++|.+|++.|+.+..+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 36678899999988876432 248899998886432211111 1 458999999877665442 3688888
Q ss_pred cCCc--eEEEeeccccceEE-EEEEccCCCEEEEEec---CCeEEEEECCC--ce-EEEeecC-CceeEEEEcCCCCEEE
Q 009188 347 LGGK--ELECWKGQRTLKIS-DLEVTSDGKQIITMCK---ESALLLLDREA--KV-ERYIEED-QTITSFSLSRDNKFLL 416 (540)
Q Consensus 347 ~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~---d~~i~~~d~~~--~~-~~~~~~~-~~i~~~~~s~~~~~l~ 416 (540)
+.+. +-............ ....+.++++++..+. ++.+.+++... .. ....... .....+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 8765 22222222211222 3344557887665543 34688888422 11 2222222 2222222 22333333
Q ss_pred EEecC-C--eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEE--ECCCCceeEeec-CCCCC
Q 009188 417 VNLLN-Q--EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW--HRASCDLIGALP-GHSGA 490 (540)
Q Consensus 417 ~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~-~h~~~ 490 (540)
....+ . .|...++... .....+..+.... .+....+. .+.++++...+|.-+++ +..++ .+..+. .....
T Consensus 285 ~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~-~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDE-QQWEELIPPRENI-MLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEcCCCCCceEEEecCCCc-ccCeEEECCCCCC-EEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 32221 2 3333344321 1122333332211 22222212 34566677777765544 54333 334433 22223
Q ss_pred eEEEEeC--CCCCCEEEEEeC---CCcEEEecCCCCC
Q 009188 491 VNCVSWN--PANPHMLASASD---DRTIRIWGLKDLN 522 (540)
Q Consensus 491 v~~l~~~--~~~~~~l~s~~~---Dg~i~iw~~~~~~ 522 (540)
+..+.++ +++..++++.+. -+.+..+|+.+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3334444 444445555543 4568888888765
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.62 E-value=0.69 Score=44.18 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=38.0
Q ss_pred CCcEEEEeeCCCcEEEEECCCCceeE---e-ecCCCCCeEEEEeCCCCCCEEEEEeCCCcEE
Q 009188 457 EQAFIASGSEDSQVYIWHRASCDLIG---A-LPGHSGAVNCVSWNPANPHMLASASDDRTIR 514 (540)
Q Consensus 457 ~~~~l~s~s~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~ 514 (540)
.+.++++.-..+.|....+..+..+. . +......+.++++.|||. ++++.+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 56677766667788888776443221 2 233455899999999996 777777888774
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.0091 Score=62.32 Aligned_cols=98 Identities=13% Similarity=0.176 Sum_probs=74.2
Q ss_pred CCCEEEEEecCCeEEEEECCCceE---EEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCee
Q 009188 371 DGKQIITMCKESALLLLDREAKVE---RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRF 447 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 447 (540)
.+..++.|+..|.+...|..+... .-....++|++++|+.+|+.++.|-.+|.|.+||+..+ ++.+.+..+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccc
Confidence 355678888888888888777542 23345789999999999999999999999999999887 67777776666555
Q ss_pred EEEeeeccCCCcEEEEeeCCCc
Q 009188 448 VIRSCFGGLEQAFIASGSEDSQ 469 (540)
Q Consensus 448 ~i~~~~~~~~~~~l~s~s~dg~ 469 (540)
.+-..-+..++..+.++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 5444444555567888888786
No 407
>PHA03098 kelch-like protein; Provisional
Probab=96.53 E-value=0.19 Score=51.86 Aligned_cols=189 Identities=8% Similarity=0.042 Sum_probs=91.4
Q ss_pred CCCeEEEeeCCC------cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC-----cEEEEecCCceEEEe
Q 009188 287 DDQQLLTCGVEE------AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-----SICMWELGGKELECW 355 (540)
Q Consensus 287 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~ 355 (540)
++..++.||.++ .+..||..+++-...-.............-++..++.||.++ .+..||..+......
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 566777776542 577888877665322111111111111223566777787653 577888876554433
Q ss_pred eccccceEEEEEEccCCCEEEEEecC------CeEEEEECCCceEEEeec-CC-ceeEEEEcCCCCEEEEEecC------
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMCKE------SALLLLDREAKVERYIEE-DQ-TITSFSLSRDNKFLLVNLLN------ 421 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~-~~-~i~~~~~s~~~~~l~~~~~d------ 421 (540)
...........+..-+++.++.|+.+ ..+..||..+..-..... .. .....+...++..++.|+.+
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCc
Confidence 22111111112223456777777632 457889988766222211 11 11111222356666666643
Q ss_pred --CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-----CcEEEEECCCCc
Q 009188 422 --QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED-----SQVYIWHRASCD 479 (540)
Q Consensus 422 --g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 479 (540)
..+..||..+.. - ........+......+ ..++.+++.|+.+ +.|.+||..+.+
T Consensus 454 ~~~~v~~yd~~~~~-W-~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 454 VYNIVESYNPVTNK-W-TELSSLNFPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccceEEEecCCCCc-e-eeCCCCCcccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 237888876541 1 1111111111111111 1256677777654 467788776543
No 408
>PRK10115 protease 2; Provisional
Probab=96.50 E-value=1.5 Score=46.52 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=117.3
Q ss_pred CcEEEEEEecCCCeEEEEeCC-----CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC------CcE
Q 009188 232 DEVWFLQFSHNGKYLASSSND-----RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE------EAV 300 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i 300 (540)
-.+..+.+||||++|+.+... ..|++-|+.++.. +...+.+ .-..++|++|++.|+.+..+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 356778899999988876432 3467777764421 1111111 11469999999877766542 358
Q ss_pred EEEECCCC--eEEEEeecCCCcEE-EEEEecCCCEEEEEeC---CCcEEEEecC--CceEEEeeccccceEEEEEEccCC
Q 009188 301 RRWDVSSG--NCLHVYEKAGLGLV-SCGWHPDRKWIFSGAN---DKSICMWELG--GKELECWKGQRTLKISDLEVTSDG 372 (540)
Q Consensus 301 ~iwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~ 372 (540)
..+++.++ +-...+........ ....+.++++++..+. ++.+.+++.. .................+. +. +
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 279 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-Q 279 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-C
Confidence 88888887 44445544333333 2333447877665443 3468888852 2222222221111222222 22 2
Q ss_pred CEEEEEecC----CeEEEEECCC-ce-EEEeec--CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee-CCc
Q 009188 373 KQIITMCKE----SALLLLDREA-KV-ERYIEE--DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK-GHK 443 (540)
Q Consensus 373 ~~l~~~~~d----~~i~~~d~~~-~~-~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~ 443 (540)
..+...+.. ..|...++.. .. .....+ ...+..+.+. .+.++++...+|.-+++-+......+..+. ...
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 333333322 2344445442 22 333344 2467777877 334555555566655554432212223322 111
Q ss_pred CCeeEEEeeeccCC-CcEEEEee---CCCcEEEEECCCCc
Q 009188 444 RSRFVIRSCFGGLE-QAFIASGS---EDSQVYIWHRASCD 479 (540)
Q Consensus 444 ~~~~~i~~~~~~~~-~~~l~s~s---~dg~i~iwd~~~~~ 479 (540)
.....+.. ...++ +.++++.+ .-+.++.+|..+++
T Consensus 359 ~~~~~~~~-~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIAY-NPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeecc-cCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 11111111 11133 33444333 34678889988765
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.47 E-value=0.011 Score=37.27 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5554
No 410
>PHA03098 kelch-like protein; Provisional
Probab=96.42 E-value=0.15 Score=52.60 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=88.8
Q ss_pred cCCCeEEEEeCCC------cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC-----CcEEEEECCCCe
Q 009188 241 HNGKYLASSSNDR------SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE-----EAVRRWDVSSGN 309 (540)
Q Consensus 241 p~g~~l~tg~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 309 (540)
.++..++.||.++ .+..||..++ .+.....+.........+.+ ++...+.||.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3566677776542 4566665533 12111111111112222222 57777788765 347788887764
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeCC------CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC--
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGAND------KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE-- 381 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-- 381 (540)
-...-..........+..-++...+.|+.+ ..+..||..+.................+...++..++.|+.+
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 332111111111111122356666667632 358889987665543322111111112233456666666643
Q ss_pred ------CeEEEEECCCceEEEeec---CCceeEEEEcCCCCEEEEEecC-----CeEEEEEecCC
Q 009188 382 ------SALLLLDREAKVERYIEE---DQTITSFSLSRDNKFLLVNLLN-----QEIHLWNIEGE 432 (540)
Q Consensus 382 ------~~i~~~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~ 432 (540)
..+.+||..+..-..... ...-.+++. .+++.++.|+.+ +.+..||..+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 237888888766222211 111111222 256666666643 35666766543
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.41 E-value=0.011 Score=37.41 Aligned_cols=31 Identities=10% Similarity=0.299 Sum_probs=28.4
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEee
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVD 261 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~ 261 (540)
...|.+++|+|...+||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999884
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.003 Score=54.05 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCeEEEeeCCCcEEEEECCC-CeEEEEeecCCCcEEEE-EEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEE
Q 009188 288 DQQLLTCGVEEAVRRWDVSS-GNCLHVYEKAGLGLVSC-GWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISD 365 (540)
Q Consensus 288 ~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 365 (540)
+..+++|+.+|.|.+|+..- |.....+......|.++ .--.++.+..+++.||.|+.|++.-........+|..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~---- 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF---- 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC----
Confidence 45788899999999998762 12111111222233332 2222556888999999999999976666666655541
Q ss_pred EEEccCCCEEEEEecCCeEEEEE
Q 009188 366 LEVTSDGKQIITMCKESALLLLD 388 (540)
Q Consensus 366 i~~~~~~~~l~~~~~d~~i~~~d 388 (540)
.++..+++.+.+..+.+|+
T Consensus 146 ----~~~e~~ivv~sd~~i~~a~ 164 (238)
T KOG2444|consen 146 ----ESGEELIVVGSDEFLKIAD 164 (238)
T ss_pred ----CCcceeEEecCCceEEeec
Confidence 2344444444444444443
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.40 E-value=0.99 Score=43.49 Aligned_cols=194 Identities=13% Similarity=0.142 Sum_probs=94.0
Q ss_pred CCCeEEEEe-CCCcEEEEEeecCC-ceEEEEEecC---CC----CCeEEEEECcCCCeEEEee--C----CCcEEEEECC
Q 009188 242 NGKYLASSS-NDRSAIIWEVDLNG-GVTLKHKLSG---HQ----KPVSCVSWSSDDQQLLTCG--V----EEAVRRWDVS 306 (540)
Q Consensus 242 ~g~~l~tg~-~dg~i~iwd~~~~~-~~~~~~~~~~---h~----~~v~~l~~s~~~~~l~s~~--~----dg~i~iwd~~ 306 (540)
+.++|+..+ ..+.|.|.|+.++. ..++.+.+.. +. .....+-.-|+|+.++++- . -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 67889999987442 3344444442 11 1223344457898888862 2 2458889988
Q ss_pred CCeEEEEeecCC---CcEEEEEEecCCCEEEEEeC--------------------CCcEEEEecCCceEEEeecccc--c
Q 009188 307 SGNCLHVYEKAG---LGLVSCGWHPDRKWIFSGAN--------------------DKSICMWELGGKELECWKGQRT--L 361 (540)
Q Consensus 307 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~--~ 361 (540)
+.+......... .--..+-|.|..+.+++... ..++.+||+.+.+..+...... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 888777765432 23456677887778877643 3579999999888877654432 2
Q ss_pred eEEEEEEc--cCCCEEEEEe-cCCeEEEEEC-CCce-----EEEee-----------c-------CCceeEEEEcCCCCE
Q 009188 362 KISDLEVT--SDGKQIITMC-KESALLLLDR-EAKV-----ERYIE-----------E-------DQTITSFSLSRDNKF 414 (540)
Q Consensus 362 ~v~~i~~~--~~~~~l~~~~-~d~~i~~~d~-~~~~-----~~~~~-----------~-------~~~i~~~~~s~~~~~ 414 (540)
.+..+.|. |+..+-++++ -.++|..|-. .... ...+. . ..-|+.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 35566664 4444444433 3444544433 3322 11110 0 245789999999999
Q ss_pred EEEEe-cCCeEEEEEecCCcee
Q 009188 415 LLVNL-LNQEIHLWNIEGEVKL 435 (540)
Q Consensus 415 l~~~~-~dg~i~i~d~~~~~~~ 435 (540)
|.++. ..|.|+.||+.....+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 88766 4899999999875443
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.31 E-value=0.93 Score=42.18 Aligned_cols=229 Identities=13% Similarity=0.134 Sum_probs=104.6
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-CeE-
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-GNC- 310 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~- 310 (540)
...++.|..+ ..+++|. .+ +.+...+.+.....+..-..-.+....+....++..++ ++..|.| |...+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~-~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGE-PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEE-TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcC-Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCe
Confidence 3566777543 3444443 44 44444444444443322112223344444444443333 3445543 33333 332
Q ss_pred EEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECC
Q 009188 311 LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDRE 390 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~ 390 (540)
..........+..+.-++||.+++++.......-||-....-.........++.+|.|.|++...++ ...|.++.-+..
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDP 215 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-T
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCC
Confidence 2223344567888888999998888876666677886544444444445568999999999776664 489999988833
Q ss_pred CceEEEee-------cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee-CCcCCeeEEEeeeccCCCcEEE
Q 009188 391 AKVERYIE-------EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK-GHKRSRFVIRSCFGGLEQAFIA 462 (540)
Q Consensus 391 ~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~ 462 (540)
........ ..-.+..+++.+++...++|+ .|.+ +.....+ +.-++.. ...-+....+..|.++ ..-.
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~--~~gf 290 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNP--DKGF 290 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTT-SS-EE-GGGTTSSS---EEEEEET--TEEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCC-ccceECccccCCCCceEEEEEcCC--CceE
Confidence 32222111 223478899999888777666 4433 2333333 2222222 1212222333444444 2333
Q ss_pred EeeCCCcEEEE
Q 009188 463 SGSEDSQVYIW 473 (540)
Q Consensus 463 s~s~dg~i~iw 473 (540)
.-+.+|.|--|
T Consensus 291 ~lG~~G~ll~~ 301 (302)
T PF14870_consen 291 VLGQDGVLLRY 301 (302)
T ss_dssp EE-STTEEEEE
T ss_pred EECCCcEEEEe
Confidence 44567766544
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.29 E-value=0.86 Score=41.58 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=90.4
Q ss_pred cEEEEEEecCCCeEEEEe-CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE-CCCCeE
Q 009188 233 EVWFLQFSHNGKYLASSS-NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD-VSSGNC 310 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd-~~~~~~ 310 (540)
.+.+.+++++|+.+|... .++.-.+|-...++..... +.+ ..+..-.|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 788999999999877655 2333444444434333222 222 3678889999987777766666667664 333332
Q ss_pred EE-EeecC--CCcEEEEEEecCCCEEEEEe---CCCcEEEEecC---Cc---eE---EEeeccccceEEEEEEccCCCEE
Q 009188 311 LH-VYEKA--GLGLVSCGWHPDRKWIFSGA---NDKSICMWELG---GK---EL---ECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 311 ~~-~~~~~--~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~---~~---~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
.. ..... ...|..+.++|||..++... .++.|.+--+. .+ .+ ..........+.++.|.+++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 21 12111 12899999999999888665 34677776552 22 11 11122223478999999999887
Q ss_pred EEEecCCe
Q 009188 376 ITMCKESA 383 (540)
Q Consensus 376 ~~~~~d~~ 383 (540)
+.+...+.
T Consensus 181 V~~~~~~~ 188 (253)
T PF10647_consen 181 VLGRSAGG 188 (253)
T ss_pred EEeCCCCC
Confidence 77665443
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.28 E-value=0.35 Score=47.04 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=63.7
Q ss_pred EEEECcCCCeEEEeeCCCcEEE---EECC-CC----eEEEEeec---C--CCcEEEEEEec-----------CCCEEEEE
Q 009188 281 CVSWSSDDQQLLTCGVEEAVRR---WDVS-SG----NCLHVYEK---A--GLGLVSCGWHP-----------DRKWIFSG 336 (540)
Q Consensus 281 ~l~~s~~~~~l~s~~~dg~i~i---wd~~-~~----~~~~~~~~---~--~~~v~~~~~~~-----------~~~~l~~~ 336 (540)
.++.+|+++.|+.+..+..+.+ |+.. .+ .......+ + ...|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4577889999998877776555 5431 11 22222211 1 14677776654 35689999
Q ss_pred eCCCcEEEEecCCceEEEeeccccceEEEEEEccCC---------CEEEEEecCCeEEEEE
Q 009188 337 ANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG---------KQIITMCKESALLLLD 388 (540)
Q Consensus 337 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~l~~~~~d~~i~~~d 388 (540)
..+|.|++|...+. +......|..+|..+.+.... ..+..... +.+.+.|
T Consensus 86 ~ssG~vrfyte~G~-LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 86 TSSGYVRFYTENGV-LLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred ecccEEEEEeccch-HHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 99999999997554 333333345577777765321 34444444 5566655
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.25 E-value=0.4 Score=47.48 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=97.7
Q ss_pred cEEEEEEecCCCeEE-EEe--CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC----CCeEEEeeCCCcEEEEEC
Q 009188 233 EVWFLQFSHNGKYLA-SSS--NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD----DQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~-tg~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~i~iwd~ 305 (540)
+|..++|. ||+.++ |.- .+|.++.=|. ..+ +.-..|..++|.|- ...+++......|.||.+
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCCc------cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 67788886 555443 331 2333333221 122 33345899999984 335666677888999987
Q ss_pred C-----CCeEEEEeecC-----CCcEEEEEEecCCCEEEEEeCCCcEEEEecC--CceEEEeeccccceEEEEEEccCCC
Q 009188 306 S-----SGNCLHVYEKA-----GLGLVSCGWHPDRKWIFSGANDKSICMWELG--GKELECWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 306 ~-----~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~ 373 (540)
. +++.+..-..+ .---..+.|+|....|++-.....=.++++. +..+..-. ...+.|.|.+|.+||+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCC
Confidence 5 22322221111 1112457899998888776665544566663 23332222 3445899999999999
Q ss_pred EEEEEec-CCeEEEEECCCce------EEEeecCCceeEEEEcCC
Q 009188 374 QIITMCK-ESALLLLDREAKV------ERYIEEDQTITSFSLSRD 411 (540)
Q Consensus 374 ~l~~~~~-d~~i~~~d~~~~~------~~~~~~~~~i~~~~~s~~ 411 (540)
+++++-. .-.-++||-..+. ...+.-.+.|.++.-.-+
T Consensus 169 RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 8876643 3456788866543 333445556666655443
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=96.22 E-value=0.41 Score=48.42 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=71.9
Q ss_pred CCCeEEEeeCCC-----cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC--cEEEEecCCceEEEeeccc
Q 009188 287 DDQQLLTCGVEE-----AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK--SICMWELGGKELECWKGQR 359 (540)
Q Consensus 287 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~ 359 (540)
++..+++||.++ .+..||..+++....-.............-++...++|+.++ .+..||..+........-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 455566666543 467788877654332211111111111223666667777543 5788887665544333222
Q ss_pred cceEEEEEEccCCCEEEEEecCC---eEEEEECCCceEEEeec-CCce-eEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 360 TLKISDLEVTSDGKQIITMCKES---ALLLLDREAKVERYIEE-DQTI-TSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 360 ~~~v~~i~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~-~~~i-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
..........-+|+..+.|+.++ .+..||..+..-..... ..+. ...+..-+++..+.|+ .+..||.+++
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCC
Confidence 21222223344677777777543 46788887766332211 1111 1122233566666653 4677887654
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.20 E-value=0.2 Score=48.68 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=81.2
Q ss_pred CcEEEEEEecCCCeEEEEe-----------CCC-cEEEEEeecC-CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 232 DEVWFLQFSHNGKYLASSS-----------NDR-SAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~-----------~dg-~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
.....|+|.++|+++++-. ..+ .|.+++-..+ +.......+.........+++.+++ .++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456899999999776642 223 6766653322 2222333444444557889999888 444 44443
Q ss_pred cEEEEECCC-----CeEE---EEeecC----CCcEEEEEEecCCCEEEEEeCC-------------------CcEEEEec
Q 009188 299 AVRRWDVSS-----GNCL---HVYEKA----GLGLVSCGWHPDRKWIFSGAND-------------------KSICMWEL 347 (540)
Q Consensus 299 ~i~iwd~~~-----~~~~---~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~iwd~ 347 (540)
..++.|... ++.. ..+... ......++|.|||.+.++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333434422 1211 122221 2346789999999766654421 44556666
Q ss_pred CCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 348 GGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
.+.....+.... .....++|+++|+.+++-.
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 665554443332 3456788888888776544
No 420
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.17 E-value=0.99 Score=41.14 Aligned_cols=230 Identities=10% Similarity=0.086 Sum_probs=132.5
Q ss_pred eEEEEECcCCCeEEEeeCCCcEEEEECC------CC-eEEEEeec-----CCCcEEEEEEecCCC------------EEE
Q 009188 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVS------SG-NCLHVYEK-----AGLGLVSCGWHPDRK------------WIF 334 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~ 334 (540)
-+.|+++|.+.+-++....+...+||.. .. ..+-.+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5678999999888887788889999986 12 22333321 124567777775332 367
Q ss_pred EEeCCCcEEEEecCCc------eEEEeeccc-cceEEEEEEccC--CCEEEEE-ecCCeEEEEECCCceEEEe-------
Q 009188 335 SGANDKSICMWELGGK------ELECWKGQR-TLKISDLEVTSD--GKQIITM-CKESALLLLDREAKVERYI------- 397 (540)
Q Consensus 335 ~~~~dg~i~iwd~~~~------~~~~~~~~~-~~~v~~i~~~~~--~~~l~~~-~~d~~i~~~d~~~~~~~~~------- 397 (540)
.+++||+|.-|...-. ......... ..--..+++... +.+|..+ ...++|.++|-.-......
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 7889999999986321 112222121 222344555433 4555544 4788899998654432111
Q ss_pred -------------ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc--CCeeEEE---eeeccCCCc
Q 009188 398 -------------EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK--RSRFVIR---SCFGGLEQA 459 (540)
Q Consensus 398 -------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~i~---~~~~~~~~~ 459 (540)
...-.|+-..-.++.+.=+.+..-|.|-+||... ..++++.... ..-+.+. ..|....+.
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0000111111122222223334457899999876 4555553221 2222222 234566788
Q ss_pred EEEEeeCCCcEEEEECCCCceeEeecCCCC------CeEEEEeCCC-----CCCEEEEEeCC
Q 009188 460 FIASGSEDSQVYIWHRASCDLIGALPGHSG------AVNCVSWNPA-----NPHMLASASDD 510 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~~~~-----~~~~l~s~~~D 510 (540)
+|+.--.||+|..||..+++.+..+....+ ..+.++|... -..++.+++-+
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence 888888899999999999998888875443 4678888652 11355666543
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=96.17 E-value=1.3 Score=42.40 Aligned_cols=273 Identities=10% Similarity=0.044 Sum_probs=130.8
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeec-CCceEEEEE-ecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDL-NGGVTLKHK-LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS- 307 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~-~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~- 307 (540)
...++++.|....+-+++|. +|. ||.... +...+.... +......+.++.|.++ ..+++ +..+.|. ...+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~--~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLL--HTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEE--EECCC
Confidence 55889999986666666664 453 444332 222322111 1112334777888643 33443 4455432 2222
Q ss_pred CeEEEEee---cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeE
Q 009188 308 GNCLHVYE---KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 308 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
|+.-..+. ........+.....+..+ .++..|.|..=+=.+..-..........+.++.+.+++..+++ +..|.+
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~-g~~G~i 195 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAV-SSRGNF 195 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEE-eCCceE
Confidence 32222211 011111222222223233 3344454433222233333333333457889999998766554 445555
Q ss_pred EE-EECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCC-cCCeeEEEeeeccCCCcE
Q 009188 385 LL-LDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH-KRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 385 ~~-~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 460 (540)
.. ++..... .........++++.+.++++.++++. .|.+++=....+ ..-...... ......+....+.+++..
T Consensus 196 ~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 196 YSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCC-CccccccCCccccccceeeEEEcCCCCE
Confidence 43 3333222 22233456789999999998877654 566543222222 111111111 101112222223556665
Q ss_pred EEEeeCCCcEEEEECCCCceeEeec---CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 461 IASGSEDSQVYIWHRASCDLIGALP---GHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
++ ++.+|.|.. ....|+.-.... .-....+.+.|..++. .+..|..|.|..|+-
T Consensus 274 ~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~--~~~~G~~G~il~~~~ 330 (334)
T PRK13684 274 WA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK--GFVLGQRGVLLRYVG 330 (334)
T ss_pred EE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc--eEEECCCceEEEecC
Confidence 54 455676553 444444433332 2224577888776553 456778888887764
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.03 E-value=0.41 Score=47.40 Aligned_cols=146 Identities=13% Similarity=0.207 Sum_probs=89.1
Q ss_pred CCeEEEEECcCCCeEEEee---CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC----CCEEEEEeCCCcEEEEecC-
Q 009188 277 KPVSCVSWSSDDQQLLTCG---VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD----RKWIFSGANDKSICMWELG- 348 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~- 348 (540)
.+|..++|. ||+.++-.. .+|.+++=| .+.+.. -..|..+.|.|- ...+++.-....|.+|.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 568889997 555544332 233333222 122222 246888999983 3366677778899999984
Q ss_pred -Cc---eE-EEee----ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCCCCEEE
Q 009188 349 -GK---EL-ECWK----GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLL 416 (540)
Q Consensus 349 -~~---~~-~~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~ 416 (540)
.. +. .... ....--.....|+|....+++-.....-.+++..... ..-+...+.|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 11 11 1111 1111112456789998888887776665666654432 34456788999999999998888
Q ss_pred EEecC-CeEEEEEec
Q 009188 417 VNLLN-QEIHLWNIE 430 (540)
Q Consensus 417 ~~~~d-g~i~i~d~~ 430 (540)
++-.. =.-++||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 76543 345778753
No 423
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.94 E-value=1.5 Score=42.38 Aligned_cols=180 Identities=14% Similarity=0.150 Sum_probs=85.2
Q ss_pred EEEecCCCeEEEE--eCC----CcEEEEEeecCCceEEEEEecCC---CCCeEEEEECcCCCeEEEeeC-----------
Q 009188 237 LQFSHNGKYLASS--SND----RSAIIWEVDLNGGVTLKHKLSGH---QKPVSCVSWSSDDQQLLTCGV----------- 296 (540)
Q Consensus 237 ~~~sp~g~~l~tg--~~d----g~i~iwd~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~----------- 296 (540)
+---|+|++++++ ..+ |.+.+.|-++ .......... ..--+.+-|.|..+.++|...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t---f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGET---FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCcc---ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 3344789888875 222 4466666442 2344433332 233466778888888887642
Q ss_pred ---------CCcEEEEECCCCeEEEEeecCCC--cEEEEEEecC--CCEEEEE-eCCCcEEEEec-CCce-----EEEee
Q 009188 297 ---------EEAVRRWDVSSGNCLHVYEKAGL--GLVSCGWHPD--RKWIFSG-ANDKSICMWEL-GGKE-----LECWK 356 (540)
Q Consensus 297 ---------dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~--~~~l~~~-~~dg~i~iwd~-~~~~-----~~~~~ 356 (540)
..++.+||+.+.+.++++.-... ....+.|..+ ..+=++| .-.++|..|-- ..+. +....
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 34799999999999999876543 3456666553 4443333 33444544433 2222 11111
Q ss_pred cc--------c--------cceEEEEEEccCCCEEEEEe-cCCeEEEEECCCce------EEEee---------------
Q 009188 357 GQ--------R--------TLKISDLEVTSDGKQIITMC-KESALLLLDREAKV------ERYIE--------------- 398 (540)
Q Consensus 357 ~~--------~--------~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~------~~~~~--------------- 398 (540)
.. . ..-+++|.+|.|.++|...+ -.|.++.||+.... ...++
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 10 0 23479999999999988776 68999999998743 11111
Q ss_pred cCCceeEEEEcCCCCEEEEEe
Q 009188 399 EDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 399 ~~~~i~~~~~s~~~~~l~~~~ 419 (540)
..+...-+..|.||+.+.+.+
T Consensus 372 l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --S----EEE-TTSSEEEEE-
T ss_pred cCCCCCeEEEccCCeEEEEEe
Confidence 112336677888888777654
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=95.90 E-value=0.58 Score=47.35 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=81.8
Q ss_pred CCCeEEEEeCCC-----cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC--CcEEEEECCCCeEEEEe
Q 009188 242 NGKYLASSSNDR-----SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE--EAVRRWDVSSGNCLHVY 314 (540)
Q Consensus 242 ~g~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~ 314 (540)
++..+++||.++ ++..||...+ .......+.........+. -++...+.||.+ .++..||..+++-...-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455667777543 4556665533 1222222211111122222 367777777754 35788887665432211
Q ss_pred ecCCCcEEEEEEecCCCEEEEEeCCC---cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 315 EKAGLGLVSCGWHPDRKWIFSGANDK---SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 315 ~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
.-...........-+|+..+.|+.++ .+..||.++.................+..-++...+.| |.+.+||..+
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 11111111111223576777777654 47788887665544322221111122223456666665 3567888877
Q ss_pred ceEEEee---cCCceeEEEEcCCCCEEEEEecC
Q 009188 392 KVERYIE---EDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 392 ~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
..-.... ....-.+++ .-+++..++|+.+
T Consensus 425 ~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFY 456 (480)
T ss_pred CcEeEcCCCCCCccccEEE-EECCEEEEECCcC
Confidence 6632222 111111222 2366677777654
No 425
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.87 E-value=1.2 Score=39.73 Aligned_cols=241 Identities=11% Similarity=-0.005 Sum_probs=155.1
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG 357 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 357 (540)
....++-.|||..-+++...+.|--.|..+|+....--+....-..+..-|||..-++-+.. -|.-.|-++.+...+.-
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 35567888899888888888888888999998776666666677778888888766654433 46566666655555432
Q ss_pred ---cccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe--ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 358 ---QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI--EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 358 ---~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
..........|++.|..-.++.. |.---.|......... ........|+..|+|...++.-.++.|...|....
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence 33345777889999988777653 2222223322222221 23456678999999999988888888888776654
Q ss_pred ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce-eEeecCCCCCeEEEEeCCCCCCEEEEEeCCC
Q 009188 433 VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL-IGALPGHSGAVNCVSWNPANPHMLASASDDR 511 (540)
Q Consensus 433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg 511 (540)
.. ..+..........+-.+.++.|..-++-...+.+..+|-.+..- ...+.+....-.++.....+. +..+--..|
T Consensus 221 ~a--ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr-VW~sea~ag 297 (353)
T COG4257 221 HA--EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR-VWLSEADAG 297 (353)
T ss_pred Cc--ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc-EEeeccccC
Confidence 21 22222222112233445577888888888888888888665442 234555555666777766663 555555566
Q ss_pred cEEEecCCCCCc
Q 009188 512 TIRIWGLKDLNV 523 (540)
Q Consensus 512 ~i~iw~~~~~~~ 523 (540)
.|.-+|..+.+.
T Consensus 298 ai~rfdpeta~f 309 (353)
T COG4257 298 AIGRFDPETARF 309 (353)
T ss_pred ceeecCcccceE
Confidence 777777776544
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.80 E-value=3 Score=44.07 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECC----------CCeE---EEEee--------cCCCcEEEEEEecC---CCE
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVS----------SGNC---LHVYE--------KAGLGLVSCGWHPD---RKW 332 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~----------~~~~---~~~~~--------~~~~~v~~~~~~~~---~~~ 332 (540)
-.|..|.++|+|.+++..|..|.+.+ .+. .|+. .+++. .....|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46889999999999999998775433 332 1111 11111 33467899999995 589
Q ss_pred EEEEeCCCcEEEEecCC
Q 009188 333 IFSGANDKSICMWELGG 349 (540)
Q Consensus 333 l~~~~~dg~i~iwd~~~ 349 (540)
|++-..|+++++||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999953
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.65 E-value=0.8 Score=44.53 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCeEEEEECcCCCeEEEee-----------CCC-cEEEEECCC--CeE--EEEeecCCCcEEEEEEecCCCEEEEEeCCC
Q 009188 277 KPVSCVSWSSDDQQLLTCG-----------VEE-AVRRWDVSS--GNC--LHVYEKAGLGLVSCGWHPDRKWIFSGANDK 340 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 340 (540)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....+++.+++ +++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4467789999998877753 223 677776443 332 23443333456788999888 44444444
Q ss_pred cEEEEecCCc-----eEEEe---ecc----ccceEEEEEEccCCCEEEEEecC-------------------CeEEEEEC
Q 009188 341 SICMWELGGK-----ELECW---KGQ----RTLKISDLEVTSDGKQIITMCKE-------------------SALLLLDR 389 (540)
Q Consensus 341 ~i~iwd~~~~-----~~~~~---~~~----~~~~v~~i~~~~~~~~l~~~~~d-------------------~~i~~~d~ 389 (540)
..++.|.... +...+ ... .......+.+.|||...++.+.. |.+..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334455321 11111 111 12347789999999877755521 45677777
Q ss_pred CCceEEEeec-CCceeEEEEcCCCCEEEEEe
Q 009188 390 EAKVERYIEE-DQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 390 ~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~ 419 (540)
.+........ ......++|+++|+++++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6655433332 33457899999998877644
No 428
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.64 E-value=3.8 Score=43.70 Aligned_cols=229 Identities=10% Similarity=0.018 Sum_probs=117.6
Q ss_pred CCeEEEeeCCCcEEEEECCCCeEEEEeecCCCc--------EEEEEEec----------------CCCEEEEEeCCCcEE
Q 009188 288 DQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG--------LVSCGWHP----------------DRKWIFSGANDKSIC 343 (540)
Q Consensus 288 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i~ 343 (540)
+..++.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788899999999999998887643211 11222221 345788899999999
Q ss_pred EEecCCceEEEeeccccceEE-------------EEEEcc--CCCEEEEEec----------CCeEEEEECCCceEEEee
Q 009188 344 MWELGGKELECWKGQRTLKIS-------------DLEVTS--DGKQIITMCK----------ESALLLLDREAKVERYIE 398 (540)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~-------------~i~~~~--~~~~l~~~~~----------d~~i~~~d~~~~~~~~~~ 398 (540)
-.|.++++......... .+. .+.-.| .+..+++++. +|.|+-+|..+++.....
T Consensus 274 ALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99998776653322110 110 001111 1345555542 688999999998854433
Q ss_pred cCCceeEEEEcCCCCEEEEEecCC-eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 399 EDQTITSFSLSRDNKFLLVNLLNQ-EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 399 ~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
+......-...+.+.....++.+. ...-+|.+.+ .+..-.+..... ++..+ +........+.|.-.|..+
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g--lvy~ptGn~~pd------~~g~~-r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG--LVYLPMGNQTPD------QWGGD-RTPADEKYSSSLVALDATT 423 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC--eEEEeCCCcccc------ccCCc-cccCcccccceEEEEeCCC
Confidence 221100000011232222222111 2233343332 111111111110 00000 0000112345677788889
Q ss_pred CceeEeecCCCCCeE---------EEEeCC-CCC--CEEEEEeCCCcEEEecCCCCCcccc
Q 009188 478 CDLIGALPGHSGAVN---------CVSWNP-ANP--HMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 478 ~~~~~~~~~h~~~v~---------~l~~~~-~~~--~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
|+..-.++.....+. -+.+.. +|. ..++.++.+|.+.+.|-++|+.+..
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 988766654111111 112222 331 2788999999999999999987754
No 429
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.0017 Score=61.67 Aligned_cols=146 Identities=12% Similarity=0.167 Sum_probs=108.0
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEE-EecCCeEEEEEecCCceeeeEeeC
Q 009188 363 ISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLV-NLLNQEIHLWNIEGEVKLVAKYKG 441 (540)
Q Consensus 363 v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~ 441 (540)
.....|.+.+..++.++.+..+..||-...........+....++|+.++..+++ +-..+.+.+||+.+.....-.+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 3445677777779999999999999988877666666777788899998866554 556889999999865322222222
Q ss_pred CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEE
Q 009188 442 HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIR 514 (540)
Q Consensus 442 ~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~ 514 (540)
... .....|++.+..++.|...|.+.|++..+.+.+.....|...+++++|.+.+ +.+.++.|..+-
T Consensus 117 ~~s----~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~L~ 183 (615)
T KOG2247|consen 117 TSS----KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDCDNTLS 183 (615)
T ss_pred cch----HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCcHHHHH
Confidence 222 2234558888889999999999999988877776666699999999999976 566777665443
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.44 E-value=1.6 Score=38.05 Aligned_cols=200 Identities=11% Similarity=0.128 Sum_probs=99.0
Q ss_pred EEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCC--CEEE-EEecCCeEEEEECCCceEEE---------eec
Q 009188 332 WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG--KQII-TMCKESALLLLDREAKVERY---------IEE 399 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~-~~~~d~~i~~~d~~~~~~~~---------~~~ 399 (540)
++.+--..|.|.-||+.+........... +..++.+.-.+ ..++ .++..-.|.-||........ ...
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p-~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGP-PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecC-cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 44444455667778886655443332221 12233332222 1222 33333344556643322111 112
Q ss_pred CCceeEEEEcCCCCEEEEEecC---------CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCC-CcEEEEeeCCCc
Q 009188 400 DQTITSFSLSRDNKFLLVNLLN---------QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE-QAFIASGSEDSQ 469 (540)
Q Consensus 400 ~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~s~dg~ 469 (540)
..+.+.-..+|+|+++.-...+ |.++.|-.....+.+..-.+... .+ .|+.+ ..+.++-+.+-.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN---gl---~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN---GL---AWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc---cc---cccccCcEEEEEccCceE
Confidence 4556677789999994432222 33444433322111111111111 11 22333 345566677778
Q ss_pred EEEEE--CCCCce-----eEeecC----CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCC-ce-Eec
Q 009188 470 VYIWH--RASCDL-----IGALPG----HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSN-GV-HYC 536 (540)
Q Consensus 470 i~iwd--~~~~~~-----~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~-~v-~~c 536 (540)
|.-|| ..+|.. +..++. .....-.++....|. +.+++=..|+|...|+.+|++......+. .+ ..|
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 87777 555543 333332 111223455566674 88888888999999999999988755543 33 445
Q ss_pred cCC
Q 009188 537 NGG 539 (540)
Q Consensus 537 ~~g 539 (540)
-+|
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 554
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.17 Score=53.67 Aligned_cols=140 Identities=15% Similarity=0.095 Sum_probs=92.3
Q ss_pred CeEEEEECcCCCeEEEe--eCCCcEEEEECCCCeE-----EEEee------cCCCcEEEEEEecCC-CEEEEEeCCCcEE
Q 009188 278 PVSCVSWSSDDQQLLTC--GVEEAVRRWDVSSGNC-----LHVYE------KAGLGLVSCGWHPDR-KWIFSGANDKSIC 343 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~-----~~~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~ 343 (540)
++..+...+|+...++. +.+-.|..||+++-.. ..-+. ....-..++.|+|.- ...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555566676655444 3344788999875321 11111 123345678888843 2466778889998
Q ss_pred EEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe-----ecCCceeEEEEcCCCCEEEE
Q 009188 344 MWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-----EEDQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~ 417 (540)
+..+................++++|+|.|+.+++|...|++.-|.........+ .....|.+++|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 888754333322333445789999999999999999999999998776642222 23578999999887777665
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.24 E-value=0.0054 Score=62.59 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=56.4
Q ss_pred EecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecC-Cce---EEEEEecCCCCCeEEEEECc---CCCeEEEeeC
Q 009188 225 QILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLN-GGV---TLKHKLSGHQKPVSCVSWSS---DDQQLLTCGV 296 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~-~~~---~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~ 296 (540)
..++|..+.|-.+.|.. +...++ -.-|...+|+++.- ++. -.++....-...+.-+.|.| +.-++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 35667788888888854 222222 22367889988632 111 11222233344556666665 5566666777
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEec
Q 009188 297 EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHP 328 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 328 (540)
++.|++..+.+... ..+..|...++.++|..
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~ 234 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFA 234 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHh
Confidence 78888777654322 33445666666665543
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=2.3 Score=38.52 Aligned_cols=149 Identities=11% Similarity=0.119 Sum_probs=91.7
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecC--CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce--
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA--GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE-- 351 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-- 351 (540)
.+-+..+.++ +++...+..+.-++|.|+.+.........- .+-..+ |.-.|++..++..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 3456667776 456777777777999999876543332211 122333 44468899998866667788985432
Q ss_pred -EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-E---EEeecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009188 352 -LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-E---RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHL 426 (540)
Q Consensus 352 -~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 426 (540)
+.............++++ |++-..++.|+-+.+.|+..+. . ........+.++..+++..+++... ..+.+
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvli 237 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLI 237 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEE
Confidence 322222232233455554 6777788899999999988865 2 2223344677888877766665543 34566
Q ss_pred EEecCC
Q 009188 427 WNIEGE 432 (540)
Q Consensus 427 ~d~~~~ 432 (540)
-|..+.
T Consensus 238 vd~s~~ 243 (370)
T COG5276 238 VDVSGP 243 (370)
T ss_pred EecCCC
Confidence 666554
No 434
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.12 E-value=0.0047 Score=58.79 Aligned_cols=244 Identities=10% Similarity=0.150 Sum_probs=136.6
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEE-EEeCCCcEEEEecCCceEEEee
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWK 356 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~ 356 (540)
......|-+.+..++.++.+..+..||- .|+..... ..+.....++|..++..++ .+-..+.+.+||+++..-....
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhh-hcceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3445678888877888889999999994 45544443 3344566788988887655 4566789999999754433333
Q ss_pred ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEee-cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce
Q 009188 357 GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIE-EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
......-.-+.|++.+..++.+...|.+.+++..+.. ....+ |..+++++++.+.+..+.. +.|..+.+-...+...
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~-dcd~~L~v~~qegeta 192 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC-DCDNTLSVTTQEGETA 192 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec-CcHHHHHHhhhcccee
Confidence 2222222336788888899999999999999988765 33334 7889999999987755443 3343333222222111
Q ss_pred eeeEeeCCcCC--eeEEEeeeccCCCcEEEEeeCCCcEEEE---ECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 435 LVAKYKGHKRS--RFVIRSCFGGLEQAFIASGSEDSQVYIW---HRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 435 ~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~s~dg~i~iw---d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
......+.... .+.+..-.|..-|..+.+.-.......| +-..+..--.++...+.+.++.|--||. +.-+-+
T Consensus 193 ~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~--i~igf~ 270 (615)
T KOG2247|consen 193 SLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY--ILIGFD 270 (615)
T ss_pred eeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc--cccccc
Confidence 11111111110 0111122222223332222111100000 0011111114555567788999988873 555556
Q ss_pred CCcEEEecCCCCCcccc
Q 009188 510 DRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 510 Dg~i~iw~~~~~~~~~~ 526 (540)
-|.|..-...++++..+
T Consensus 271 ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 271 AGYIVSISAHNAELGAE 287 (615)
T ss_pred ceeEEEEeccchHHHHH
Confidence 66666666666665543
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=2.7 Score=43.19 Aligned_cols=196 Identities=13% Similarity=0.210 Sum_probs=99.8
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec---cccceEEEEEEccCCC
Q 009188 297 EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG---QRTLKISDLEVTSDGK 373 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~ 373 (540)
--.|+|+++ +|+.+....-....+..+.|+.+. .|++...+|++.+|++-+........ .....|....+..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 345888885 677666655445588899999766 56777899999999996654443211 112234444444444
Q ss_pred EEEEEecCCeEEEEE-CCCceEEEee--cCC--ceeEEEEcCCCC---EEEEEecCCeEEEEEecCCceeeeEeeCCcCC
Q 009188 374 QIITMCKESALLLLD-REAKVERYIE--EDQ--TITSFSLSRDNK---FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS 445 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d-~~~~~~~~~~--~~~--~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 445 (540)
+++-..+|.+.+.. .......... ... +-++.+..+++. .++-....-...++-..........+...
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~--- 215 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP--- 215 (829)
T ss_pred -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC---
Confidence 44444555554443 3332211111 111 112222222221 11111100001111111110111111111
Q ss_pred eeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec--CCCCCeEEEEeCCCC
Q 009188 446 RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP--GHSGAVNCVSWNPAN 500 (540)
Q Consensus 446 ~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~ 500 (540)
...+.-+..+++.++|+--.++|.|.+-+....+.+..+. .|. +...++|+.+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 1122233348899999999999999999888777776665 232 23367776544
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.77 Score=46.86 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=96.7
Q ss_pred cCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 231 TDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 231 ~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
.++..++..+|..- -++ +.--.|+|+++.. .....+.-..+.+..+.|+.+. .|++...+|+++||++. |+
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG----~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge 114 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNISG----QLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GE 114 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEeccc----cchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hh
Confidence 34444555555321 111 2234578887652 2222233333478899999655 56667899999999974 43
Q ss_pred EEEEe----ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe-cCCceEEEeeccccceE--EEEEEccCCC---EEEEEe
Q 009188 310 CLHVY----EKAGLGLVSCGWHPDRKWIFSGANDKSICMWE-LGGKELECWKGQRTLKI--SDLEVTSDGK---QIITMC 379 (540)
Q Consensus 310 ~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~v--~~i~~~~~~~---~l~~~~ 379 (540)
.+... ......|..+.+..+| +++-..+|.+.+-+ ................. .+-...+++. .++-..
T Consensus 115 ~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~ 192 (829)
T KOG2280|consen 115 FIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVD 192 (829)
T ss_pred hhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeec
Confidence 33331 2233456666666665 44444455554433 22222222222111111 2222222211 111111
Q ss_pred cCCeEEEEECCC--ce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 380 KESALLLLDREA--KV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 380 ~d~~i~~~d~~~--~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
..--..++-... .. .........+..+.+||+.++|+.-+..|.|.+-+....
T Consensus 193 ~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 193 VAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred hhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 000001111111 11 222223467888999999999999999999998887654
No 437
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.88 E-value=3 Score=38.06 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=89.0
Q ss_pred CeEEEEECcCCCeEEEee--C-CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe-cCCc--e
Q 009188 278 PVSCVSWSSDDQQLLTCG--V-EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE-LGGK--E 351 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~--~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~--~ 351 (540)
.+.+.+++++++.++... . ...+.++.. +....... ....+..-.|++++...++...+....++. ...+ .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 2 234555543 33222221 333677789999987777666666666663 2222 2
Q ss_pred EEEeeccccc-eEEEEEEccCCCEEEEEe---cCCeEEEEECCC---c--e-----EEE-eecCCceeEEEEcCCCCEEE
Q 009188 352 LECWKGQRTL-KISDLEVTSDGKQIITMC---KESALLLLDREA---K--V-----ERY-IEEDQTITSFSLSRDNKFLL 416 (540)
Q Consensus 352 ~~~~~~~~~~-~v~~i~~~~~~~~l~~~~---~d~~i~~~d~~~---~--~-----~~~-~~~~~~i~~~~~s~~~~~l~ 416 (540)
.......... .|..+.++|||..++... .++.|.+--+.. . . ... ......++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222222112 899999999999988776 346666654321 1 1 111 12356889999999998888
Q ss_pred EEecCCe
Q 009188 417 VNLLNQE 423 (540)
Q Consensus 417 ~~~~dg~ 423 (540)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7766543
No 438
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=94.84 E-value=0.0093 Score=40.33 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=38.6
Q ss_pred hcCChHHHHHHhcccCCCChhhHhhHHHHHhhhhhhhcccccchhHHHHHHHhhccC
Q 009188 66 LDGHWDESLATLSKIGLVDESVVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAP 122 (540)
Q Consensus 66 ~~g~w~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~ 122 (540)
++.+||..+.....++...+...+++...+|+++ .|.+++.+.++.
T Consensus 13 lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~D-----------AA~RViArl~kE 58 (70)
T PF08606_consen 13 LQNEWDALMLENFTLRKQLDQTRQELSHALYQHD-----------AACRVIARLLKE 58 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHh
Confidence 4689999999999998888899999999999999 777776654443
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.69 E-value=2.2 Score=43.82 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEec--CCCEEEEEeCCCcEEEEecCC----
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGLVSCGWHP--DRKWIFSGANDKSICMWELGG---- 349 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~---- 349 (540)
..+.-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.++.|.. +++.+++.+..+.|.+|.-..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555544444444445569999998887544332 3467899999865 888999999999999986421
Q ss_pred ---c---eE--EEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECC
Q 009188 350 ---K---EL--ECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDRE 390 (540)
Q Consensus 350 ---~---~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~ 390 (540)
. .+ .........+|.+..|.++|..++.+ ++.+.++|..
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 0 11 11222333578889999988766654 4466666643
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.68 Score=44.32 Aligned_cols=121 Identities=15% Similarity=0.219 Sum_probs=72.6
Q ss_pred ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeee-EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 398 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVA-KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 398 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
...++|.++.||+|.+.+++--.+.+|.+++......... .............++| ..+ .-+|..+..| +-+|-..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W-~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW-TSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE-ecC-eeEEEEecCC-eEEEEEc
Confidence 3467999999999999999999999999999854422211 1122222222344444 333 3455554444 4455433
Q ss_pred C-CceeEeecCCCCCeEEEEeCCCCCCEEEEEe-CCCcEEEecCCCC
Q 009188 477 S-CDLIGALPGHSGAVNCVSWNPANPHMLASAS-DDRTIRIWGLKDL 521 (540)
Q Consensus 477 ~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~Dg~i~iw~~~~~ 521 (540)
. .+.++..+.|.-.|+-..|+++..-.+.+.+ ..+++.=+-++++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 3 2334555668888999999998764444444 3334444444444
No 441
>PLN02193 nitrile-specifier protein
Probab=94.38 E-value=6.5 Score=39.74 Aligned_cols=189 Identities=10% Similarity=0.017 Sum_probs=92.3
Q ss_pred CCCeEEEeeCC-------CcEEEEECCCCeEEEEeec--CCC--cEEEEEEecCCCEEEEEeCCC-----cEEEEecCCc
Q 009188 287 DDQQLLTCGVE-------EAVRRWDVSSGNCLHVYEK--AGL--GLVSCGWHPDRKWIFSGANDK-----SICMWELGGK 350 (540)
Q Consensus 287 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~--~~~--~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 350 (540)
++..++.|+.+ ..+.+||+.+.+-...-.. ... ........-++...+.|+.++ .+..||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 45566666643 2477888877653321100 011 111111222455666676543 5888998876
Q ss_pred eEEEeecc---ccceEEEEEEccCCCEEEEEecC-----CeEEEEECCCceEEEeecC-----Cc-eeEEEEcCCCCEEE
Q 009188 351 ELECWKGQ---RTLKISDLEVTSDGKQIITMCKE-----SALLLLDREAKVERYIEED-----QT-ITSFSLSRDNKFLL 416 (540)
Q Consensus 351 ~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~-----~~-i~~~~~s~~~~~l~ 416 (540)
+....... ........+..-+++.++.|+.+ ..+..||+.+..-...... .. -..++ .-+++.++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~-~~~gkiyv 333 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE-VVQGKVWV 333 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE-EECCcEEE
Confidence 65543221 11111112222356666666654 3467788877663222211 01 11122 22567777
Q ss_pred EEecC----CeEEEEEecCCceeeeEeeCC---cCCeeEEEeeeccCCCcEEEEeeCC--------------CcEEEEEC
Q 009188 417 VNLLN----QEIHLWNIEGEVKLVAKYKGH---KRSRFVIRSCFGGLEQAFIASGSED--------------SQVYIWHR 475 (540)
Q Consensus 417 ~~~~d----g~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~s~d--------------g~i~iwd~ 475 (540)
.++.+ ..+.+||+.+. .- ..+... ..+.....++ ..++++++.|+.+ ..+.+||.
T Consensus 334 iGG~~g~~~~dv~~yD~~t~-~W-~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPVQD-KW-TQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EECCCCCccCceEEEECCCC-EE-EEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 77655 45889998765 22 112111 1111111111 2356777777753 24788898
Q ss_pred CCCce
Q 009188 476 ASCDL 480 (540)
Q Consensus 476 ~~~~~ 480 (540)
.+.+-
T Consensus 410 ~t~~W 414 (470)
T PLN02193 410 ETLQW 414 (470)
T ss_pred CcCEE
Confidence 77554
No 442
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.07 E-value=1.8 Score=44.49 Aligned_cols=112 Identities=13% Similarity=0.234 Sum_probs=72.3
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEEC--cCCCeEEEeeCCCcEEEEECC---
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS--SDDQQLLTCGVEEAVRRWDVS--- 306 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~iwd~~--- 306 (540)
..+.-+.-|.-++..++-+....+.|||...+ ..+....+ ...+.|.++.|. |+++.+++.|..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~-~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSG-VLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCc-EEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 34445555555554444444567999998744 33333444 557889999996 689999999999999998532
Q ss_pred --C----CeEEEEe--ecC-CCcEEEEEEecCCCEEEEEeCCCcEEEEec
Q 009188 307 --S----GNCLHVY--EKA-GLGLVSCGWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 307 --~----~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
+ ...++.+ ..+ ..+|.+..|.++|..++.++ ..+.++|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 1223332 222 36899999999996554433 46888774
No 443
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.07 E-value=4.3 Score=36.48 Aligned_cols=238 Identities=10% Similarity=0.039 Sum_probs=140.9
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
..-..++-+|||..-+++...+.|--.|-.++ +....-.+.......|..-|||..-++-+.. .|.-.|-++.+..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tG---ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATG---EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCC---ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 34557778888887778777777766666554 2222223444455667777777766653333 3444555454322
Q ss_pred E-E--eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEE
Q 009188 312 H-V--YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388 (540)
Q Consensus 312 ~-~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d 388 (540)
. . .+..........|.+.|+.-+++.. |.---.|-....+..+..........|+..|+|..-++.-.++.|...|
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeecc-ccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcc
Confidence 1 1 1223456777889999988887753 3222233334444444444555678899999999988888888888888
Q ss_pred CCCceEEEee----cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe
Q 009188 389 REAKVERYIE----EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG 464 (540)
Q Consensus 389 ~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 464 (540)
........+. .......+..+|.|+.-++....+.+..||-....-....+.+.....+.+.. ...++.-.+-
T Consensus 217 p~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV---D~~grVW~se 293 (353)
T COG4257 217 PFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV---DRHGRVWLSE 293 (353)
T ss_pred cccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee---ccCCcEEeec
Confidence 7665422222 13345566778888888887778888888876543333334444444444433 3344444434
Q ss_pred eCCCcEEEEECCC
Q 009188 465 SEDSQVYIWHRAS 477 (540)
Q Consensus 465 s~dg~i~iwd~~~ 477 (540)
-.-|.|.-+|-.+
T Consensus 294 a~agai~rfdpet 306 (353)
T COG4257 294 ADAGAIGRFDPET 306 (353)
T ss_pred cccCceeecCccc
Confidence 4445555555443
No 444
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=0.41 Score=50.97 Aligned_cols=146 Identities=9% Similarity=0.016 Sum_probs=90.0
Q ss_pred CcEEEEEEecCCCeEEEE--eCCCcEEEEEeecCCceE--EEE------EecCCCCCeEEEEECcCC-CeEEEeeCCCcE
Q 009188 232 DEVWFLQFSHNGKYLASS--SNDRSAIIWEVDLNGGVT--LKH------KLSGHQKPVSCVSWSSDD-QQLLTCGVEEAV 300 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg--~~dg~i~iwd~~~~~~~~--~~~------~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i 300 (540)
-+|..+...+|+...++. +.+-.|..||+..-.... ... +......-+.++.|+|.- ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 356666667777655443 333467888875321100 011 111223346678888853 345566788888
Q ss_pred EEEECCCCeE-EEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee---ccccceEEEEEEccCCCEEE
Q 009188 301 RRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK---GQRTLKISDLEVTSDGKQII 376 (540)
Q Consensus 301 ~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~ 376 (540)
++..+.-... +..+ ......++++|+|.|+++++|-..|++.-|-.......... ......|.+++|-....+++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 8887643322 2222 34557899999999999999999999998876543322222 12245799999988777766
Q ss_pred EE
Q 009188 377 TM 378 (540)
Q Consensus 377 ~~ 378 (540)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 54
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=6.6 Score=37.98 Aligned_cols=127 Identities=10% Similarity=0.024 Sum_probs=78.4
Q ss_pred CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE----EEEeecCCCcEEEEEE
Q 009188 251 NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC----LHVYEKAGLGLVSCGW 326 (540)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~ 326 (540)
..|.+.=|-+...+...+...-....++|.++.||+|.+.+|.--.+++|.+++....+. ..+.+.....|....|
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 345566666553332223333334567999999999999999999999999998743322 2222334556888999
Q ss_pred ecCCCEEEEEeCCCcEEEEecCC-ceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 327 HPDRKWIFSGANDKSICMWELGG-KELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 327 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
+.+ .-++.....| +-+|-... ....+....+...|.-..|.++.+.++.++
T Consensus 121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 876 4455555444 55555422 222223334445677888888877665544
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.54 E-value=0.73 Score=44.78 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=78.0
Q ss_pred EecCCeEEEEECCCceE-EEeecCCceeEEEEcCCCC-------EEEEEecCCeEEEEEecCCceeee--EeeCCcCCee
Q 009188 378 MCKESALLLLDREAKVE-RYIEEDQTITSFSLSRDNK-------FLLVNLLNQEIHLWNIEGEVKLVA--KYKGHKRSRF 447 (540)
Q Consensus 378 ~~~d~~i~~~d~~~~~~-~~~~~~~~i~~~~~s~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~ 447 (540)
++....++-.|+..+.. ..-.....+ -+.+.|..+ .-++|-.+..|.-.|.+.....+. ..+.... .+
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t-Kn 563 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT-KN 563 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc-cc
Confidence 33444556666655542 111222223 566766432 234555666666667654422111 1111111 01
Q ss_pred EEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 448 VIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 448 ~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
...+. ......++|.+|..|-|++||.-..+.-..+++....|..+..+.+|..+|+||- ..+.+-|++
T Consensus 564 ~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 564 KFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred ccccc-ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 11111 1335568999999999999997655555667788889999999999987777663 355555553
No 447
>PLN02153 epithiospecifier protein
Probab=93.51 E-value=7.4 Score=37.38 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=35.9
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCceEEEeecc-----ccceEEEEEEccCCCEEEEEecC-----------CeEEEE
Q 009188 329 DRKWIFSGAND-----KSICMWELGGKELECWKGQ-----RTLKISDLEVTSDGKQIITMCKE-----------SALLLL 387 (540)
Q Consensus 329 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d-----------~~i~~~ 387 (540)
++..++.|+.+ ..+.+||..+.+-...... ........+...+++.++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45566677653 2578889877655433211 11122222233456667776643 247788
Q ss_pred ECCCce
Q 009188 388 DREAKV 393 (540)
Q Consensus 388 d~~~~~ 393 (540)
|..+..
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 988776
No 448
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.34 E-value=7.6 Score=36.98 Aligned_cols=104 Identities=9% Similarity=0.047 Sum_probs=52.8
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCceE----EEeeccccceEEEEEEccCCCEEEEEec-----CCeEEEEECCCceE
Q 009188 329 DRKWIFSGANDK-----SICMWELGGKEL----ECWKGQRTLKISDLEVTSDGKQIITMCK-----ESALLLLDREAKVE 394 (540)
Q Consensus 329 ~~~~l~~~~~dg-----~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~ 394 (540)
++..++.|+.++ .+..+|+.+... ..........-...+..-+++.++.|+. ...+..||..+..-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 455666776543 566777765443 1111111111111122235666666664 24688889887662
Q ss_pred EEee---cCCceeEEEEcCCCCEEEEEecCC----eEEEEEecCC
Q 009188 395 RYIE---EDQTITSFSLSRDNKFLLVNLLNQ----EIHLWNIEGE 432 (540)
Q Consensus 395 ~~~~---~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~ 432 (540)
.... ........+...++++.+.|+.++ .+..||..+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2221 112222333344677777777653 3567887764
No 449
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.30 E-value=0.36 Score=29.55 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=25.8
Q ss_pred CCeEEEEECcCC---CeEEEeeCCCcEEEEECCC
Q 009188 277 KPVSCVSWSSDD---QQLLTCGVEEAVRRWDVSS 307 (540)
Q Consensus 277 ~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~ 307 (540)
+.|.++.|+|++ .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999985
No 450
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.26 E-value=9 Score=37.59 Aligned_cols=143 Identities=7% Similarity=0.088 Sum_probs=88.6
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeE----EEEeecCCCcEEEEEEec-----CCCEEEEEeCCCcEEEEecCC--c-----
Q 009188 287 DDQQLLTCGVEEAVRRWDVSSGNC----LHVYEKAGLGLVSCGWHP-----DRKWIFSGANDKSICMWELGG--K----- 350 (540)
Q Consensus 287 ~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~--~----- 350 (540)
+...|++||..|.++||+...+.. +..-..-..+|..+..-+ +...||+ -.-..+.+|.+.. +
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 346899999999999999855431 111123356777776532 2234444 5556788888721 1
Q ss_pred ---eEEEeeccc-cceEEEEEEccC-----CCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEec
Q 009188 351 ---ELECWKGQR-TLKISDLEVTSD-----GKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 351 ---~~~~~~~~~-~~~v~~i~~~~~-----~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
.+.....++ ......+++-|- ...+++-+-||.+.+|+-+.-. ......---...+++.+....+++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 111111111 112333443332 3567788999999999988876 333333334456888898899999998
Q ss_pred CCeEEEEEec
Q 009188 421 NQEIHLWNIE 430 (540)
Q Consensus 421 dg~i~i~d~~ 430 (540)
+..+.-|...
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 8888888763
No 451
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.01 E-value=6.7 Score=35.46 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=108.0
Q ss_pred cEEEEEEecCCCeEEEEeCCC--cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 233 EVWFLQFSHNGKYLASSSNDR--SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
-...+.|..+|.++-+.+.-| .|+.+|+.++.. .....+.. .----.++.. +++...-.-.++...+||..+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~-~~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV-LQSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE-EEEEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE-EEEEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 345677777888888877766 577777775532 22222222 2112233333 233444445788999999999999
Q ss_pred EEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec-----cccceEEEEEEccCCCEEEEEecCCeEE
Q 009188 311 LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG-----QRTLKISDLEVTSDGKQIITMCKESALL 385 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~d~~i~ 385 (540)
+..+.-. ..=+.++ .|++.|+.+.....+.++|..+.+...... ..-..++.+.+- +|...+-.-....|.
T Consensus 123 ~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 8888654 4556776 567788888777899999987644333221 112345667775 677777777788888
Q ss_pred EEECCCceEEE-ee----------------cCCceeEEEEcCCCCEEEEEe
Q 009188 386 LLDREAKVERY-IE----------------EDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 386 ~~d~~~~~~~~-~~----------------~~~~i~~~~~s~~~~~l~~~~ 419 (540)
..|..++...- .. ...-.+.++++|..+.+++.+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88888876222 10 134578999999876666555
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.96 E-value=0.13 Score=53.02 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=69.4
Q ss_pred EEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEE-----------ECcCCCeEEEeeCCCcEEEEEC
Q 009188 237 LQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVS-----------WSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 237 ~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
+-|-++.-++..+-.+++|++..++... ...+.+|...+..++ .+|||..++.+..||.++.|.+
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 3344466788888888999988776431 134556776665554 4889999999999999888865
Q ss_pred C-----CCeEEEEeecCC-CcEEEEEEecCCC---------EEEEEe-CCCcEEEEecCCce
Q 009188 306 S-----SGNCLHVYEKAG-LGLVSCGWHPDRK---------WIFSGA-NDKSICMWELGGKE 351 (540)
Q Consensus 306 ~-----~~~~~~~~~~~~-~~v~~~~~~~~~~---------~l~~~~-~dg~i~iwd~~~~~ 351 (540)
. ..+|....+.|+ .+-.|.-++.+.. ++++++ .+..+++|.....+
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 3 335666677776 3333333433211 233433 34468888765433
No 453
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=4.2 Score=39.94 Aligned_cols=26 Identities=8% Similarity=-0.094 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEE
Q 009188 320 GLVSCGWHPDRKWIFSGANDKSICMW 345 (540)
Q Consensus 320 ~v~~~~~~~~~~~l~~~~~dg~i~iw 345 (540)
.|..+..++.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 56777888999999999998855443
No 454
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.62 E-value=5.9 Score=41.06 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=42.6
Q ss_pred eEEEEEEccCCCEEEEEecCC-----eEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 362 KISDLEVTSDGKQIITMCKES-----ALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 362 ~v~~i~~~~~~~~l~~~~~d~-----~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
.-..++|-|.|..+++...|| .|.++..++-. .........+...+|+.....++++. .+.+.+|-..+
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkN 325 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKN 325 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccc
Confidence 334589999999999887665 35666655432 12223344556677766555554443 55788887654
No 455
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=6.4 Score=33.84 Aligned_cols=173 Identities=10% Similarity=0.043 Sum_probs=85.6
Q ss_pred CCCEEEEEeCCC--cEEEEecCCceEEEeeccccceEEEEEEccCCCEEE-EEecCCeEEEEECCCce-EEEeecCCcee
Q 009188 329 DRKWIFSGANDK--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQII-TMCKESALLLLDREAKV-ERYIEEDQTIT 404 (540)
Q Consensus 329 ~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~i~~~d~~~~~-~~~~~~~~~i~ 404 (540)
+|.++.+.+.-| .|++||+.+++......-....+-.=-...-|..+. ..-.+|.-..+|.++-. .....-++.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 455555555433 699999987665433322211111111111233333 33467778888877644 22222222222
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEecCCc---eeeeEeeCCcC-CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce
Q 009188 405 SFSLSRDNKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGHKR-SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 405 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 480 (540)
.+ ..|+..++.+.....++.-|.++-. ...-++.+..- ...-+.+ -+|...|-.-.+..|...|..+|+.
T Consensus 135 gL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~----VdG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 GL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW----VDGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee----eccEEEEeeeeecceEEEcCCCCcE
Confidence 23 3355556666556666666654321 11111111110 0001111 2444555444455566666677766
Q ss_pred eEeec------------CCCCCeEEEEeCCCCCCEEEEE
Q 009188 481 IGALP------------GHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 481 ~~~~~------------~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
+..+. .|....+.+++.|++.++++||
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55432 2455778999999987677776
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.42 E-value=10 Score=36.08 Aligned_cols=134 Identities=10% Similarity=0.066 Sum_probs=67.0
Q ss_pred CCCeEEEeeCCC-----cEEEEECCCCeEE---EEeecCCCcE--EEEEEecCCCEEEEEeCC-----CcEEEEecCCce
Q 009188 287 DDQQLLTCGVEE-----AVRRWDVSSGNCL---HVYEKAGLGL--VSCGWHPDRKWIFSGAND-----KSICMWELGGKE 351 (540)
Q Consensus 287 ~~~~l~s~~~dg-----~i~iwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 351 (540)
++.+++.|+.++ .+..+|+.+.+-. ..+..-..+. .+++. -+++..+.|+.. ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 556667777543 4667777665531 2221111111 12222 256666666642 358888987665
Q ss_pred EEEeeccc-cceEEEEEEccCCCEEEEEecCC----eEEEEECCCceEEEeecC----Cce---eEE-EEcCCCCEEEEE
Q 009188 352 LECWKGQR-TLKISDLEVTSDGKQIITMCKES----ALLLLDREAKVERYIEED----QTI---TSF-SLSRDNKFLLVN 418 (540)
Q Consensus 352 ~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~----~~i---~~~-~~s~~~~~l~~~ 418 (540)
-....... .......+...+++.++.|+.++ .+..||..+..-...... .+. ... ....++++++.|
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G 230 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIG 230 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEEC
Confidence 54433211 11222333345677777777653 356888887663322211 111 111 122356777777
Q ss_pred ecC
Q 009188 419 LLN 421 (540)
Q Consensus 419 ~~d 421 (540)
+.+
T Consensus 231 G~~ 233 (323)
T TIGR03548 231 GFN 233 (323)
T ss_pred CcC
Confidence 765
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.15 E-value=0.56 Score=28.73 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=27.0
Q ss_pred CCeEEEEeCCCCC--CEEEEEeCCCcEEEecCCC
Q 009188 489 GAVNCVSWNPANP--HMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 489 ~~v~~l~~~~~~~--~~l~s~~~Dg~i~iw~~~~ 520 (540)
+.|.++.|+|... .+|+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998654 5888888889999999995
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.08 E-value=8.2 Score=40.33 Aligned_cols=145 Identities=9% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEE---EEEe--c--------------CCCCCeEEEEECc--CCCeEEEeeCCCcEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTL---KHKL--S--------------GHQKPVSCVSWSS--DDQQLLTCGVEEAVR 301 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~---~~~~--~--------------~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 301 (540)
+.++++|. .+.|.||+.+.-..... ...+ . .....|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56677765 57899999763222110 0000 0 0112244444332 556889999999999
Q ss_pred EEECCC-------C----e---------EEEEeecCCCcEEEEEEe--cCCCEEEEEeCCCcEEEEecCC---ceEEEee
Q 009188 302 RWDVSS-------G----N---------CLHVYEKAGLGLVSCGWH--PDRKWIFSGANDKSICMWELGG---KELECWK 356 (540)
Q Consensus 302 iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~ 356 (540)
+|.+++ . + +...+ ..+..+++++++ ...++||+++....|.+|-... .......
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997632 0 0 11111 224578999998 7777888888888787776532 1111112
Q ss_pred ccccceEEEEEEccCC------CEEEEEecCCeEEEEEC
Q 009188 357 GQRTLKISDLEVTSDG------KQIITMCKESALLLLDR 389 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~------~~l~~~~~d~~i~~~d~ 389 (540)
..+...|.+++|-++. ..+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2344578889887643 27888889999998887
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.02 E-value=3.2 Score=40.60 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=79.3
Q ss_pred EeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC--------CeEEEeeCCCcEEEEECCC-CeEEEEeecCCC
Q 009188 249 SSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD--------QQLLTCGVEEAVRRWDVSS-GNCLHVYEKAGL 319 (540)
Q Consensus 249 g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--------~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~ 319 (540)
|+.-..++--|+..+ +.+....-|..- -+.|.|+. ..|+ |-.+..|.-.|.+- |..+.... ...
T Consensus 486 g~~~~kLykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~e-sKd 558 (776)
T COG5167 486 GGERDKLYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVE-SKD 558 (776)
T ss_pred CCCcccceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeee-ehh
Confidence 333344555555544 455556656554 46777742 3344 44455555555543 32222221 111
Q ss_pred cEEEEEEe----cCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 320 GLVSCGWH----PDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 320 ~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
.++.-.|+ ....++++++..|.|++||--+.........-...|..+..+.+|+++++.|.. .+.+.|+..
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~i 633 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVPI 633 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEeccc
Confidence 22222222 234599999999999999976555555555556689999999999999887754 566666544
No 460
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.89 E-value=21 Score=38.57 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC------CeEEEeeCCCcEEEEECCCCeEEEEeec
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD------QQLLTCGVEEAVRRWDVSSGNCLHVYEK 316 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 316 (540)
...++.+-.+|.+..+..+.++.......-..-+..|.|+++.+++ ++++.++.|+.+++..+.-..++..+..
T Consensus 549 r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV 628 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc
Confidence 3455555666777666665443332222222334568889988754 6799999999999999887666666543
Q ss_pred C--CCcEEEEEEec---CC------CEEEEEeCCCcEEEE
Q 009188 317 A--GLGLVSCGWHP---DR------KWIFSGANDKSICMW 345 (540)
Q Consensus 317 ~--~~~v~~~~~~~---~~------~~l~~~~~dg~i~iw 345 (540)
. ..++.++.+-+ ++ -++.+|-.+|.+.-.
T Consensus 629 q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 629 QGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 2 34444444433 22 245677777755443
No 461
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.85 E-value=12 Score=38.94 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=24.9
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEec
Q 009188 316 KAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 316 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
.-...|...+|+.|.+.++....+..|.+++-
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 34567888899999998877777778877764
No 462
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.65 E-value=1.1 Score=39.70 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=50.7
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCceeEee-------c-------CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 455 GLEQAFIASGSEDSQVYIWHRASCDLIGAL-------P-------GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 455 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~-------~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
..++.++++-+.+|.+++||+.+++.+..- . .....|..+..+.+|. -+++-+ +|..+.|+..-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecccc
Confidence 457889999999999999999988765332 1 2456789999998874 566654 57889998775
Q ss_pred CCcc
Q 009188 521 LNVK 524 (540)
Q Consensus 521 ~~~~ 524 (540)
+.-.
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 5433
No 463
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.60 E-value=13 Score=35.69 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=27.5
Q ss_pred CCCEEEEEeCC-----------CcEEEEecCCceEEEeeccccceEEE-EEE-ccCCCEEEEEecC
Q 009188 329 DRKWIFSGAND-----------KSICMWELGGKELECWKGQRTLKISD-LEV-TSDGKQIITMCKE 381 (540)
Q Consensus 329 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~-i~~-~~~~~~l~~~~~d 381 (540)
+++..+.|+.+ ..+..||..+..-............. .+. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666777653 24777888766554432111111111 112 3467777777653
No 464
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.55 E-value=14 Score=35.98 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=27.1
Q ss_pred CCCEEEEEeCC-----------CcEEEEecCCceEEEeeccccceEE-EEEEc-cCCCEEEEEecC
Q 009188 329 DRKWIFSGAND-----------KSICMWELGGKELECWKGQRTLKIS-DLEVT-SDGKQIITMCKE 381 (540)
Q Consensus 329 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~-~~~~~l~~~~~d 381 (540)
++...+.|+.+ ..+..||..+............... ..+.. .+++.++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 55566666643 2477788876655443321111111 12222 467777777753
No 465
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=91.54 E-value=0.4 Score=34.23 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCCccc
Q 009188 24 EFVRIIAKALYSLGYTKSGAHLEEESGIPLH 54 (540)
Q Consensus 24 e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~ 54 (540)
-++-||..||+-+||+.|+.+|+.|+|.+-.
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 3688999999999999999999999998643
No 466
>PLN02153 epithiospecifier protein
Probab=91.53 E-value=14 Score=35.59 Aligned_cols=145 Identities=8% Similarity=0.017 Sum_probs=71.6
Q ss_pred CCCeEEEeeCC-----CcEEEEECCCCeEEEE--eec---CCCcEEEEEEecCCCEEEEEeCC-----------CcEEEE
Q 009188 287 DDQQLLTCGVE-----EAVRRWDVSSGNCLHV--YEK---AGLGLVSCGWHPDRKWIFSGAND-----------KSICMW 345 (540)
Q Consensus 287 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iw 345 (540)
++.+++.|+.+ ..+.+||+.+.+-... +.. ........+...+++.++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 46677777753 3578889877653321 110 11111222223356666676653 247788
Q ss_pred ecCCceEEEeeccc---cceE-EEEEEccCCCEEEEEec-------------CCeEEEEECCCceEEEeec----C-Cce
Q 009188 346 ELGGKELECWKGQR---TLKI-SDLEVTSDGKQIITMCK-------------ESALLLLDREAKVERYIEE----D-QTI 403 (540)
Q Consensus 346 d~~~~~~~~~~~~~---~~~v-~~i~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~----~-~~i 403 (540)
|..+..-....... ..+. .+++ .-+++.++.++. ...+.+||..+..-..... . ...
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 88766554432211 1111 1122 235566665542 2458889988876322221 1 111
Q ss_pred eEEEEcCCCCEEEEEecC--------------CeEEEEEecCC
Q 009188 404 TSFSLSRDNKFLLVNLLN--------------QEIHLWNIEGE 432 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~d--------------g~i~i~d~~~~ 432 (540)
...+...+++.++.|+.. +.+..||..+.
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 112223356777777742 25677777654
No 467
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.30 E-value=3.4 Score=37.03 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=84.5
Q ss_pred EEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC---CeEEEEECCC---ce--E---EEeecCCceeEEEEcC
Q 009188 342 ICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE---SALLLLDREA---KV--E---RYIEEDQTITSFSLSR 410 (540)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---~~i~~~d~~~---~~--~---~~~~~~~~i~~~~~s~ 410 (540)
-.+||+.+.+.............+-.+.+||+.+.+|+.. ..+++++... .. . ........-.+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 3478887777665554444445555678999999988742 3477777654 11 1 1123344556677788
Q ss_pred CCCEEEEEecCCe-EEEEEecCC-ceeee-EeeCC---cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee
Q 009188 411 DNKFLLVNLLNQE-IHLWNIEGE-VKLVA-KYKGH---KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 411 ~~~~l~~~~~dg~-i~i~d~~~~-~~~~~-~~~~~---~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 484 (540)
||+.+++|+...- ..+|.-... ..... .+... ......--..+.-|+|++++.+..+. .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 9999999988753 344443211 11111 11110 01111112344578999998888754 56688888777776
Q ss_pred cCCCC
Q 009188 485 PGHSG 489 (540)
Q Consensus 485 ~~h~~ 489 (540)
..-.+
T Consensus 206 P~lPg 210 (243)
T PF07250_consen 206 PDLPG 210 (243)
T ss_pred CCCCC
Confidence 64333
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.14 E-value=18 Score=40.12 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=25.4
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEee
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVD 261 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~ 261 (540)
.....++|+|...++|.|+.+|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 345678999999999999999999999643
No 469
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=26 Score=37.75 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=43.5
Q ss_pred EEecCCCeEEEEeCCCcEEEEEeecCCceEEEEE------e--cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 238 QFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHK------L--SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 238 ~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~------~--~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
++..-|+.+..|+.+|.+.+|.+........... + .-+..+|..+...+.-..+++ -.|+.|.++++.+-+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCccc
Confidence 3344688999999999999999875422111111 0 112456666665554444444 346778888876655
Q ss_pred E
Q 009188 310 C 310 (540)
Q Consensus 310 ~ 310 (540)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 4
No 470
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=6.5 Score=38.75 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=20.6
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
.|..+..++.|..++-+|.+|.+..+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 46778889999999999999865443
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.73 E-value=1.6 Score=45.14 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=46.4
Q ss_pred cCCCeEEEEeCCCcEEEEEeec---CCceEEEEEecC--------------------CCCCeEEEEECc----CCCeEEE
Q 009188 241 HNGKYLASSSNDRSAIIWEVDL---NGGVTLKHKLSG--------------------HQKPVSCVSWSS----DDQQLLT 293 (540)
Q Consensus 241 p~g~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~--------------------h~~~v~~l~~s~----~~~~l~s 293 (540)
++...++.+..||.+....... .+.......+.. ....+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888899888887664 111111111111 123456666666 7789999
Q ss_pred eeCCCcEEEEECCCCeEEEEee
Q 009188 294 CGVEEAVRRWDVSSGNCLHVYE 315 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~~~~~ 315 (540)
.+.|+.+|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977653
No 472
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.58 E-value=2.9 Score=37.04 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=50.7
Q ss_pred ECcCCCeEEEeeCCCcEEEEECCCCeEEEEe-------e-------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC
Q 009188 284 WSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY-------E-------KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 284 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 349 (540)
+..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++- .+|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 3446889999999999999999998765432 1 244678888888888766655 457889998765
Q ss_pred ceEE
Q 009188 350 KELE 353 (540)
Q Consensus 350 ~~~~ 353 (540)
+.-.
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 4433
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.40 E-value=17 Score=34.69 Aligned_cols=108 Identities=16% Similarity=0.285 Sum_probs=66.8
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCc------EEEEEeecC----CceEEE--EEecCCCC--------CeEEEEECcCCC
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRS------AIIWEVDLN----GGVTLK--HKLSGHQK--------PVSCVSWSSDDQ 289 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~------i~iwd~~~~----~~~~~~--~~~~~h~~--------~v~~l~~s~~~~ 289 (540)
.-+.+..+.+.|++..+++.+.+|. +..+++... ...... ..+..-.+ ..-+|++.++|.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467889999976666777777777 666655531 111111 11222222 234778877888
Q ss_pred eEEEeeCC------CcEEEEECCCCeEEEEee---------------cCCCcEEEEEEecCCCEEEEEeC
Q 009188 290 QLLTCGVE------EAVRRWDVSSGNCLHVYE---------------KAGLGLVSCGWHPDRKWIFSGAN 338 (540)
Q Consensus 290 ~l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 338 (540)
++++.-.+ ..|..++.. |+....+. ......-+++++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88776666 678888865 66554441 12346788999999997776654
No 474
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.30 E-value=15 Score=33.90 Aligned_cols=209 Identities=9% Similarity=0.162 Sum_probs=119.4
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecC----CceEEEEEecC-----CCCCeEEEEECcCCC------------eE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLN----GGVTLKHKLSG-----HQKPVSCVSWSSDDQ------------QL 291 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~----~~~~~~~~~~~-----h~~~v~~l~~s~~~~------------~l 291 (540)
.-|.|+++|.+.+-++....+...+||.+.. ....+.-++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4578999999988888777889999998621 11122333332 224577788875332 35
Q ss_pred EEeeCCCcEEEEECCCCeE-----EEEeecC--CCcEEEEEEec--CCCEEEEEe-CCCcEEEEecCCceEEE---eecc
Q 009188 292 LTCGVEEAVRRWDVSSGNC-----LHVYEKA--GLGLVSCGWHP--DRKWIFSGA-NDKSICMWELGGKELEC---WKGQ 358 (540)
Q Consensus 292 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~--~~~v~~~~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~~---~~~~ 358 (540)
+.++.||+|.-|...-+.. ...+... ..-...+++.. .+.+|+.+. ..++|.++|-.-..+.. +...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7778999999998532221 1222211 22334455553 355666554 46789888864322211 0000
Q ss_pred ------ccce---------EEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCc---eeEEEEcC------CCCE
Q 009188 359 ------RTLK---------ISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQT---ITSFSLSR------DNKF 414 (540)
Q Consensus 359 ------~~~~---------v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---i~~~~~s~------~~~~ 414 (540)
.... |+-..-.++...=+.+..-|.|-+||......+....... ...++..| .+.+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0001 1111112222222333445789999999888665554443 34566655 4677
Q ss_pred EEEEecCCeEEEEEecCCceeeeEeeCC
Q 009188 415 LLVNLLNQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 415 l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
|+-...||+|..||..++ ..+-.+...
T Consensus 264 LVGNFGDG~InaFD~~sG-~~~g~L~~~ 290 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG-AQLGQLLDP 290 (336)
T ss_pred EEeecCCceeEEecCCCC-ceeeeecCC
Confidence 777788999999998766 444444433
No 475
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=89.94 E-value=0.48 Score=36.23 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHHHHHHHHHhcCChHHHHHHhcccCCCChhhHhhHHHHHhhhhhhh
Q 009188 23 VEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDESVVKSASFLILEQKFFE 102 (540)
Q Consensus 23 ~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~le 102 (540)
.|=...|.+|++..| +.+.+++|.||++.+. ..+.|+.+..|.....+. ... -..+.+.|+
T Consensus 36 ~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTv----------R~rLd~ii~~lg~~~~~~-~~~-----~~~~~~IL~ 96 (113)
T PF09862_consen 36 PEQLEFIKLFIKNRG---NLKEMEKELGISYPTV----------RNRLDKIIEKLGYEEDEE-EEE-----EDERKEILD 96 (113)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHH----------HHHHHHHHHHhCCCCCcc-ccc-----chhHHHHHH
Confidence 444567889999999 7778999999999864 122333333333311111 111 145677888
Q ss_pred cccccch--hHHHHHH
Q 009188 103 LLDAEKV--MDALKTL 116 (540)
Q Consensus 103 ll~~~~~--~~a~~~l 116 (540)
.|+.|++ ++|++.|
T Consensus 97 ~L~~GeIs~eeA~~~L 112 (113)
T PF09862_consen 97 KLEKGEISVEEALEIL 112 (113)
T ss_pred HHHcCCCCHHHHHHHh
Confidence 8888875 4577765
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=10 Score=41.83 Aligned_cols=137 Identities=15% Similarity=0.241 Sum_probs=86.9
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEE--------ecCCCEEEEEeCCCcEEEEecC----CceEEEe-----ec
Q 009188 295 GVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGW--------HPDRKWIFSGANDKSICMWELG----GKELECW-----KG 357 (540)
Q Consensus 295 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~-----~~ 357 (540)
+-|+.+.+|+.+++.....+.+....|..+.. -|.=+++++.+.--.|.++-+. +.....+ ..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35888999999998777777766666666543 2333445444444556666552 1111111 11
Q ss_pred cccceEEEEEEccCCCEEEEEecCCeEEE--EECCC----c---e---------------EEEe-ecCCceeEEEEcCCC
Q 009188 358 QRTLKISDLEVTSDGKQIITMCKESALLL--LDREA----K---V---------------ERYI-EEDQTITSFSLSRDN 412 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~~d~~i~~--~d~~~----~---~---------------~~~~-~~~~~i~~~~~s~~~ 412 (540)
.....|+++....+|+.+++|-.+ .++= |.... . + .... .+..+|..+++....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 234578899988888887776555 3321 21111 0 0 1112 346789999999999
Q ss_pred CEEEEEecCCeEEEEEecCC
Q 009188 413 KFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 413 ~~l~~~~~dg~i~i~d~~~~ 432 (540)
+.+.+-+..|.|..||+...
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ceeeeeccCceEEEEEccCC
Confidence 99999999999999999763
No 477
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.72 E-value=21 Score=34.77 Aligned_cols=192 Identities=15% Similarity=0.110 Sum_probs=96.2
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEeecCC--CcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecccc-ceEEEE
Q 009188 290 QLLTCGVEEAVRRWDVSSGNCLHVYEKAG--LGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRT-LKISDL 366 (540)
Q Consensus 290 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i 366 (540)
.+..+..+|.|.-.|..+++.+....... ..+.+-.+..+|+ ++.++.+|.++.+|.++++..-...... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 44555778888888888888665443321 2222222333564 8888899989999986665544433332 112222
Q ss_pred EEccCCCEEEEEecCCeEEEEECCCceEEEeecC-----CceeEEEEcCCCCEEEEEec--CCeEEEEEecCCceeeeEe
Q 009188 367 EVTSDGKQIITMCKESALLLLDREAKVERYIEED-----QTITSFSLSRDNKFLLVNLL--NQEIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 367 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~ 439 (540)
.+-.++ .+...+.++.+...+..+......... ..+..-... ....+..+.. ++.+.-.|..++ ......
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G-~~~w~~ 225 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDG-TLKWSQ 225 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCC-cEeeee
Confidence 222233 333334678888888876653332111 111111111 2233444443 455555565544 222221
Q ss_pred e-----CCcCC--eeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC
Q 009188 440 K-----GHKRS--RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG 486 (540)
Q Consensus 440 ~-----~~~~~--~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 486 (540)
+ +.... ...+..-..-.+ .-+..++.+|.+...|..+++.+-.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 1 11000 000000000011 2235677788899999999998877764
No 478
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.71 E-value=22 Score=34.91 Aligned_cols=147 Identities=7% Similarity=0.015 Sum_probs=78.8
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCc--eEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce---eeeE
Q 009188 364 SDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK---LVAK 438 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~ 438 (540)
..+..++++..++.+.....++-||.... ..........++++.+.+++..++++. .|.+..-+-..... ....
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYVSKGTGLTEEDFDFEE 320 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEEecCCCCcccccceee
Confidence 34556778777776665554455555443 233444566789999999998887664 55544322221101 1111
Q ss_pred eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee---cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEE
Q 009188 439 YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL---PGHSGAVNCVSWNPANPHMLASASDDRTIRI 515 (540)
Q Consensus 439 ~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~i 515 (540)
..............+ .+++.. +.++.+|.+.... ..|+.-... ..-....+.+.|.+++. ....|.+|.|.-
T Consensus 321 ~~~~~~~~~l~~v~~-~~d~~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~--g~~~G~~G~il~ 395 (398)
T PLN00033 321 ADIKSRGFGILDVGY-RSKKEA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK--GFVLGNDGVLLR 395 (398)
T ss_pred cccCCCCcceEEEEE-cCCCcE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc--eEEEeCCcEEEE
Confidence 111111111222233 445554 4555678776654 344433322 22345788999977663 556677888765
Q ss_pred e
Q 009188 516 W 516 (540)
Q Consensus 516 w 516 (540)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 5
No 479
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.56 E-value=20 Score=34.31 Aligned_cols=49 Identities=8% Similarity=0.335 Sum_probs=33.6
Q ss_pred eEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEe-------ecCCceeEEEEcCC
Q 009188 362 KISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYI-------EEDQTITSFSLSRD 411 (540)
Q Consensus 362 ~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~-------~~~~~i~~~~~s~~ 411 (540)
..+.|+|.|||+.+++ ...|.|++++..... .... ........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 4688999999877665 669999999944433 1111 23456789999994
No 480
>PRK13684 Ycf48-like protein; Provisional
Probab=89.20 E-value=21 Score=34.14 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=61.2
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEE-EecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--E
Q 009188 318 GLGLVSCGWHPDRKWIFSGANDKSICM-WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--E 394 (540)
Q Consensus 318 ~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~ 394 (540)
...+.++.+.+++.+++++ ..|.+.. ++-.+.............+.++.+.++++.++++ ..|.+++-...... .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4568889999988655544 4565443 2322233333444445578999999998876664 55766543233222 1
Q ss_pred EEee----cCCceeEEEEcCCCCEEEEEecCCeEE
Q 009188 395 RYIE----EDQTITSFSLSRDNKFLLVNLLNQEIH 425 (540)
Q Consensus 395 ~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~ 425 (540)
.... ....+.++.+.|++..++++ .+|.+.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 1111 22357788999887765554 466554
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.11 E-value=2.2 Score=40.97 Aligned_cols=165 Identities=14% Similarity=0.167 Sum_probs=97.9
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC----CeE-EEEECcCCCeEEEeeCCC
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK----PVS-CVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~-~l~~s~~~~~l~s~~~dg 298 (540)
+..+..-...|..+-..|||+.+..-+. ..+.++++.... .+..+......+ .|+ .+..-..|..++.++.||
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~-l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRS-LQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccc-cchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 3445666778889999999998877655 678899887431 111111111111 122 122233566788888999
Q ss_pred cEEEE-ECCCC-----eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCC
Q 009188 299 AVRRW-DVSSG-----NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG 372 (540)
Q Consensus 299 ~i~iw-d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 372 (540)
.|.-| |++.+ ..++.++-...++..+.-..+.+-+++-+.+|++..+.....+........ ..+.-++++|++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~~~~~~~~Sp~~ 369 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-QAPQLVAMSPNQ 369 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-cCcceeeeCccc
Confidence 98877 55432 223344334445544443335556788888888887765443333222222 256678899999
Q ss_pred CEEEEEecCCeEEEEECCCc
Q 009188 373 KQIITMCKESALLLLDREAK 392 (540)
Q Consensus 373 ~~l~~~~~d~~i~~~d~~~~ 392 (540)
.++++- ..|.++++.+++.
T Consensus 370 ~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred chheee-cCCceEEEEecCC
Confidence 888764 5567777776654
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.11 E-value=37 Score=36.85 Aligned_cols=172 Identities=11% Similarity=0.111 Sum_probs=97.4
Q ss_pred cEEEEECCCCeEEEEeecCC----CcEEEEEEecCCC--EEEEEe-----------CCCcEEEEec-CCceEEEeecccc
Q 009188 299 AVRRWDVSSGNCLHVYEKAG----LGLVSCGWHPDRK--WIFSGA-----------NDKSICMWEL-GGKELECWKGQRT 360 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~--~l~~~~-----------~dg~i~iwd~-~~~~~~~~~~~~~ 360 (540)
.|++.|..+++.+..+.... ..+..+.|+.... ++++|. .+|.++.|++ +.+....+.....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 37778877777665554322 2455566665333 333332 2345677776 2333222222222
Q ss_pred ceEEEEEEccCCCEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceee
Q 009188 361 LKISDLEVTSDGKQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLV 436 (540)
Q Consensus 361 ~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 436 (540)
-+-.-.++.|...++++ +-...+++||+..+. .........|+++++ .+..+++|.....+.++..+...+..
T Consensus 934 ~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeE
Confidence 22233455666665544 566789999998866 111123455666666 56778888887778777776555556
Q ss_pred eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC
Q 009188 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
..+....-+.+...+.. -|...+|.+..=|.+.+-.+
T Consensus 1011 ~~fadD~~pR~Vt~~~~--lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALEL--LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEeCCCccceeeEEEE--ecCCceeeccccCcEEEEEC
Confidence 66665555544444443 23455777777777766654
No 483
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.10 E-value=10 Score=30.24 Aligned_cols=111 Identities=11% Similarity=0.164 Sum_probs=64.4
Q ss_pred EEccCCCEEEEEecCCeEEEEECCCce---------EEEeecCCceeEEEEcC-----CCCEEEEEecCCeEEEEEecCC
Q 009188 367 EVTSDGKQIITMCKESALLLLDREAKV---------ERYIEEDQTITSFSLSR-----DNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 367 ~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~i~~~~~s~-----~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
.|......|++++..|.|.+++..... .........|++++-.+ ....|+.|+ ...+..||+..+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 455556678888899999999866432 45666777888886544 235566665 667999999876
Q ss_pred ceeeeEeeCCcCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECCCCcee
Q 009188 433 VKLVAKYKGHKRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRASCDLI 481 (540)
Q Consensus 433 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~ 481 (540)
..... +.-...+..+.+-.... ...++++|+ +..|.-||....+..
T Consensus 84 ~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 84 SDLFY--KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred chhhh--hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 33222 22223333333322222 344444443 455666665544433
No 484
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.87 E-value=32 Score=35.76 Aligned_cols=235 Identities=12% Similarity=0.153 Sum_probs=116.7
Q ss_pred EECcCCCeEEEeeCCCcEEEEEC-CCCeEEEEeecC-CCcEEEEEEecC---CCEEEEEeCCC-cEEEEecCCc------
Q 009188 283 SWSSDDQQLLTCGVEEAVRRWDV-SSGNCLHVYEKA-GLGLVSCGWHPD---RKWIFSGANDK-SICMWELGGK------ 350 (540)
Q Consensus 283 ~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~-~~~v~~~~~~~~---~~~l~~~~~dg-~i~iwd~~~~------ 350 (540)
.++|+.+.+-.|=....|.-|=+ .|.+.+..+.-. ...|.||..... .+..++|-.++ .-++..+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 55666665555443444443433 255666665533 345566655432 22444443333 2333333211
Q ss_pred ------eEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEE---ee--cCC------ceeEEEEcCCCC
Q 009188 351 ------ELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY---IE--EDQ------TITSFSLSRDNK 413 (540)
Q Consensus 351 ------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~--~~~------~i~~~~~s~~~~ 413 (540)
........-...+..+.+.++++.+++...+|.|.+||........ .. +.. -|..........
T Consensus 114 ~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~ 193 (670)
T PF10395_consen 114 GTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKD 193 (670)
T ss_pred cccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCc
Confidence 1111111224578899999999999999999999999993322111 11 111 111111111234
Q ss_pred EEEEEec-C---CeEEEEEecCCceeeeEee---CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC
Q 009188 414 FLLVNLL-N---QEIHLWNIEGEVKLVAKYK---GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG 486 (540)
Q Consensus 414 ~l~~~~~-d---g~i~i~d~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 486 (540)
++++-+. + -..+++.+.........+. .+........+|+ ..|.+..- .++.|.+|++...+..+++.-
T Consensus 194 ~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y--~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 194 LLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCY--QFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred eEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEE--eCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 5555443 2 2467777722212222222 1111111112222 24444333 678999999988887766542
Q ss_pred C-----C-CCeEEEE-eCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 487 H-----S-GAVNCVS-WNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 487 h-----~-~~v~~l~-~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
. . ..+.++. .+| .++|++. +..|++.|+.-..+..
T Consensus 270 ~~ii~~~~~~~vSl~~~s~--nRvLLs~--~nkIyLld~~~~siLs 311 (670)
T PF10395_consen 270 PSIIDKESDDLVSLKPPSP--NRVLLSV--NNKIYLLDLKFESILS 311 (670)
T ss_pred chhhccccccceEeecCCC--CeEEEEc--CCEEEEEeehhhhhhh
Confidence 1 1 2333443 333 2466654 5689999987655544
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.80 E-value=25 Score=34.37 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCCeEEEeeCC-----------CcEEEEECCCCeEEEEeecCCCcEE-EEEEe-cCCCEEEEEeCC
Q 009188 287 DDQQLLTCGVE-----------EAVRRWDVSSGNCLHVYEKAGLGLV-SCGWH-PDRKWIFSGAND 339 (540)
Q Consensus 287 ~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~l~~~~~d 339 (540)
++.+.+.|+.. ..+..||..+.+-...-........ ..+.. .+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 56677777653 2477788877653332111111111 11222 466677777754
No 486
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.72 E-value=1.2 Score=32.80 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=55.0
Q ss_pred CCCchHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHHHHHHHHHhcCChHHHHHHhcccCCCChhhHhhHHHHHhh
Q 009188 18 GVIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDESVVKSASFLILE 97 (540)
Q Consensus 18 ~~~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~l~~ 97 (540)
..++++++-++++ ||+-.| .....++|.|+.+-+. .++.|+++..+..-..... ..-+-+
T Consensus 40 ~~Lt~d~LeFv~l-f~r~RG---nlKEvEr~lg~sYptv----------R~kld~vlramgy~p~~e~------~~~i~~ 99 (122)
T COG3877 40 EYLTSDQLEFVEL-FLRCRG---NLKEVERELGISYPTV----------RTKLDEVLRAMGYNPDSEN------SVNIGK 99 (122)
T ss_pred cccCHhHhHHHHH-HHHHcc---CHHHHHHHHCCccHHH----------HHHHHHHHHHcCCCCCCCC------hhhhhH
Confidence 3456777766665 888888 5667899999998743 4677777766665432221 223667
Q ss_pred hhhhhcccccch--hHHHHHHH
Q 009188 98 QKFFELLDAEKV--MDALKTLR 117 (540)
Q Consensus 98 ~~~lell~~~~~--~~a~~~l~ 117 (540)
.+.+.+|+.|++ ++|++.|+
T Consensus 100 ~~i~~qle~Gei~peeA~~~L~ 121 (122)
T COG3877 100 KKIIDQLEKGEISPEEAIKMLN 121 (122)
T ss_pred HHHHHHHHcCCCCHHHHHHHhc
Confidence 788888998884 57888875
No 487
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.53 E-value=23 Score=39.33 Aligned_cols=109 Identities=10% Similarity=0.068 Sum_probs=54.9
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCC-cEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGL-GLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW 355 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 355 (540)
.....++|+|...+++.++..|.|+++-...-+.......... .+..+.+-.......+...+..+.+|..........
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~ 115 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVFL 115 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceeec
Confidence 3456789999999999999999999997543332222111110 122222222222233344455566665532221111
Q ss_pred eccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
. ..+.+....+--.+ ..+ ..+.+.++|..-
T Consensus 116 ~----~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~ 145 (993)
T KOG1983|consen 116 K----QEITSFVTDPPPDW-LIG-ENGLVKVSDVLR 145 (993)
T ss_pred C----CcceeccCCCCcch-hcc-cCceeeEeeech
Confidence 1 12233332222233 444 777777777654
No 488
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.35 E-value=6.3 Score=41.10 Aligned_cols=105 Identities=6% Similarity=0.081 Sum_probs=69.4
Q ss_pred CCCeEEEEeCCCcEEEEEeec-------C-----C-----ceEEEEEecCCCCCeEEEEEC--cCCCeEEEeeCCCcEEE
Q 009188 242 NGKYLASSSNDRSAIIWEVDL-------N-----G-----GVTLKHKLSGHQKPVSCVSWS--SDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~-------~-----~-----~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~i 302 (540)
+...|+.|..||.|.+|.++. . . ...+...+. -...++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 566899999999999997631 0 0 000111111 23478999998 77888888888888887
Q ss_pred EECCC--CeEEE-EeecCCCcEEEEEEecCC---C---EEEEEeCCCcEEEEec
Q 009188 303 WDVSS--GNCLH-VYEKAGLGLVSCGWHPDR---K---WIFSGANDKSICMWEL 347 (540)
Q Consensus 303 wd~~~--~~~~~-~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~iwd~ 347 (540)
|-... .+... .-..+...|.+++|.++. . .+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 75443 21111 111356678899998743 2 7788899999888877
No 489
>PLN02193 nitrile-specifier protein
Probab=88.06 E-value=32 Score=34.80 Aligned_cols=146 Identities=7% Similarity=-0.026 Sum_probs=74.1
Q ss_pred CCCeEEEeeCC-----CcEEEEECCCCeEEEEeec---CCCcEEEEEEecCCCEEEEEeCCC-----cEEEEecCCceEE
Q 009188 287 DDQQLLTCGVE-----EAVRRWDVSSGNCLHVYEK---AGLGLVSCGWHPDRKWIFSGANDK-----SICMWELGGKELE 353 (540)
Q Consensus 287 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 353 (540)
++.+.+.|+.+ ..+.++|+.+.+-...-.. ........+..-+++.++.|+.++ .+..||+.+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 56667777754 3588899887654332111 111111112223556666776543 4677888766544
Q ss_pred Eeeccc---cceEEEEEEccCCCEEEEEecC----CeEEEEECCCceEEEeec-----CCceeEEEEcCCCCEEEEEecC
Q 009188 354 CWKGQR---TLKISDLEVTSDGKQIITMCKE----SALLLLDREAKVERYIEE-----DQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 354 ~~~~~~---~~~v~~i~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~d 421 (540)
...... ..+....+..-+++.++.++.+ ..+.+||+.+..-..... .......+..-++++++.|+..
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 332110 0011111122356777777655 458899998877332221 1111112223356677777743
Q ss_pred --------------CeEEEEEecCC
Q 009188 422 --------------QEIHLWNIEGE 432 (540)
Q Consensus 422 --------------g~i~i~d~~~~ 432 (540)
+.+.+||+.+.
T Consensus 388 ~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 388 AMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCccccccCccceeccEEEEEcCcC
Confidence 24778887654
No 490
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.66 E-value=2.6 Score=25.17 Aligned_cols=32 Identities=13% Similarity=0.405 Sum_probs=23.1
Q ss_pred cCCCCCeEEEEeCCCCCCEEEEEeCC--CcEEEe
Q 009188 485 PGHSGAVNCVSWNPANPHMLASASDD--RTIRIW 516 (540)
Q Consensus 485 ~~h~~~v~~l~~~~~~~~~l~s~~~D--g~i~iw 516 (540)
....+.-....|+|||+.++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455678889999998777787777 777776
No 491
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.40 E-value=2.3 Score=25.40 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=21.1
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeC-C--CcEEEE
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSN-D--RSAIIW 258 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~-d--g~i~iw 258 (540)
+....+.-....|||||+.|+.++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3345567789999999998876653 4 555555
No 492
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.33 E-value=37 Score=34.73 Aligned_cols=236 Identities=12% Similarity=0.135 Sum_probs=106.0
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCC--------CeEEEEeecCCCcEEEEEEec-----CCCEEEEE--eCCC--
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSS--------GNCLHVYEKAGLGLVSCGWHP-----DRKWIFSG--ANDK-- 340 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~--~~dg-- 340 (540)
.-..++.+|.|+.++.+..+|.+.|+-+.. +......-.....|.+++|-. +...|+.- ...+
T Consensus 45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~ 124 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRT 124 (504)
T ss_dssp T--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EE
T ss_pred CCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccc
Confidence 456789999999999999999999998877 011111112356788888885 33344432 2222
Q ss_pred cEEEEe--cCCceEEEeec---------cccceEEEEEEccCCCEEEEEecCCeEEEEECCCc----eEEEee-----cC
Q 009188 341 SICMWE--LGGKELECWKG---------QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK----VERYIE-----ED 400 (540)
Q Consensus 341 ~i~iwd--~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~-----~~ 400 (540)
.+..++ ........... ....+..-+.+......++++ .++.+.+-+.... ...... ..
T Consensus 125 ~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~-~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~ 203 (504)
T PF10433_consen 125 HLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVG-GENIIIYKNHLIGSGDYSFLSIPSPPSSSS 203 (504)
T ss_dssp EEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEE-ESSEEEEEE------TTEEEEE--H-HHHT
T ss_pred eeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEE-CCEEEEEecccccccccccccccCCccCCC
Confidence 233443 33211111100 001111112222212223333 3333333332111 111111 12
Q ss_pred CceeEEE-------EcCCCCEEEEEecCCeEEEEEecCCce-eeeEeeCC-cCCeeEEEeeeccCCCcEEEEeeC--CCc
Q 009188 401 QTITSFS-------LSRDNKFLLVNLLNQEIHLWNIEGEVK-LVAKYKGH-KRSRFVIRSCFGGLEQAFIASGSE--DSQ 469 (540)
Q Consensus 401 ~~i~~~~-------~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~s~--dg~ 469 (540)
.-+++.. ...++..++.+..+|.++...+..... .....-+. ......+.... ..+.+++.||. |+.
T Consensus 204 ~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~--~g~d~lf~gs~~gds~ 281 (504)
T PF10433_consen 204 SLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLK--NGGDYLFVGSEFGDSQ 281 (504)
T ss_dssp S-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEES--TT--EEEEEESSS-EE
T ss_pred ceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEc--CCCEEEEEEEecCCcE
Confidence 3334443 345678899999999999988865432 12222222 22223333322 22347777776 445
Q ss_pred EEEEECCCCceeEeecCCCCCeEEEEeCCC---CC-------CEEEEEe--CCCcEEEec
Q 009188 470 VYIWHRASCDLIGALPGHSGAVNCVSWNPA---NP-------HMLASAS--DDRTIRIWG 517 (540)
Q Consensus 470 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~-------~~l~s~~--~Dg~i~iw~ 517 (540)
+.-|....-+.+..+. .-++|.+++..+. +. ++++++| .+|.+++..
T Consensus 282 l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 282 LLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp EEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred EEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 6666655556666666 4578888887432 11 2444443 567777764
No 493
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.20 E-value=34 Score=34.12 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=62.0
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE--EEEee-----cCCCcEEEEEEecCC------CEEEEEe----
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC--LHVYE-----KAGLGLVSCGWHPDR------KWIFSGA---- 337 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~------~~l~~~~---- 337 (540)
.-...+.|+|.|+|++|++--..|.|++++..++.. +..+. ........++++|+- .+|+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345578899999998877765469999998655432 21111 124678899999873 3454432
Q ss_pred ------CCCcEEEEecCC--ceE---EE-eec---cccceEEEEEEccCCCEEEEEecC
Q 009188 338 ------NDKSICMWELGG--KEL---EC-WKG---QRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 338 ------~dg~i~iwd~~~--~~~---~~-~~~---~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
....|.-|.+.. ..+ .. +.. ...+.-..|.|.|||..+++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 123454555431 111 11 111 111235578899999877766544
No 494
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.60 E-value=39 Score=34.24 Aligned_cols=173 Identities=11% Similarity=0.040 Sum_probs=76.3
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecccc--ceEEEEEEccCCC
Q 009188 296 VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRT--LKISDLEVTSDGK 373 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~ 373 (540)
..+...+.|. +|.....+.........+...++|.+++... ..+..+|+-++.......... ..=.++...|+|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence 3455677773 5666665554332222256678887776554 788899987765544332221 1234677889999
Q ss_pred EEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeE------------e-e
Q 009188 374 QIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAK------------Y-K 440 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~-~ 440 (540)
.|+.+.......- .... ......| +.++++ ...+..||+..-..+... . .
T Consensus 203 ~L~l~~~~~~~~~----~~~~--~~~~D~I--vevd~t---------G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 203 LLILASETKYVDE----DKDV--DTVEDVI--VEVDPT---------GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp EEEEEEETTEE-T----S-EE-----S-EE--EEE-TT---------S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred EEEEEeecccccC----CCCc--cEecCEE--EEECCC---------CCEEEEEehHHhCCcccccccccccccccccCC
Confidence 9888764322211 0000 0001111 111222 234677887643211111 0 0
Q ss_pred CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC
Q 009188 441 GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS 488 (540)
Q Consensus 441 ~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 488 (540)
........-...+...++.+++++-.-..|...|..+++....+..|.
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 111122222233323366777777666689999988988887776553
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.60 E-value=24 Score=35.15 Aligned_cols=32 Identities=13% Similarity=0.358 Sum_probs=25.6
Q ss_pred CceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 401 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
..|.+++..+..+.+++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34888999998899999999999999999753
No 496
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.50 E-value=28 Score=32.45 Aligned_cols=163 Identities=11% Similarity=0.173 Sum_probs=84.9
Q ss_pred cEEEEEeecCCceEEEEEecC----CCCCeEEEEECcCC-----CeEEEe-eCCCcEEEEECCCCeEEEEeecC------
Q 009188 254 SAIIWEVDLNGGVTLKHKLSG----HQKPVSCVSWSSDD-----QQLLTC-GVEEAVRRWDVSSGNCLHVYEKA------ 317 (540)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~-----~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~------ 317 (540)
.+.+||+.++.- .....+.. .......+.+.... .+...+ +..+.|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~l-i~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQL-IRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCE-EEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcE-EEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 677888876632 12222222 23456777776522 233333 23457999999998876655422
Q ss_pred -------------CCcEEEEEEec---CCCEEEEEeCCCcEEEEecCC-----ceE---------EEeeccccceEEEEE
Q 009188 318 -------------GLGLVSCGWHP---DRKWIFSGANDKSICMWELGG-----KEL---------ECWKGQRTLKISDLE 367 (540)
Q Consensus 318 -------------~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~-----~~~---------~~~~~~~~~~v~~i~ 367 (540)
...+..++.+| +++.|+-+...+ -++|.+.+ ... .............++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 12355555554 455555544333 12232211 000 011111113556788
Q ss_pred EccCCCEEEEEecCCeEEEEECCCc-----eEEEeec---CCceeEEEEcC--CCCEEEEE
Q 009188 368 VTSDGKQIITMCKESALLLLDREAK-----VERYIEE---DQTITSFSLSR--DNKFLLVN 418 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~---~~~i~~~~~s~--~~~~l~~~ 418 (540)
++++|..+++--..+.|..|+..+. ....... -..+.++.+.+ +|.+.+.+
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8999999999999999999998872 2222221 23567788877 55544443
No 497
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=86.25 E-value=30 Score=32.56 Aligned_cols=249 Identities=8% Similarity=-0.066 Sum_probs=0.0
Q ss_pred EEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCc-EEEEecCCceE------
Q 009188 280 SCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKS-ICMWELGGKEL------ 352 (540)
Q Consensus 280 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~------ 352 (540)
....+.-++++|+.|+.+| +.+.++........--.+...|+++...+..+.|++-+.... ++.+++..-..
T Consensus 5 ~~~~~~~~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~ 83 (302)
T smart00036 5 WNHPITCDGKWLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALG 83 (302)
T ss_pred EccccccCCcEEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccC
Q ss_pred ----------EEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCC----------ceeEEEEcCC-
Q 009188 353 ----------ECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQ----------TITSFSLSRD- 411 (540)
Q Consensus 353 ----------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----------~i~~~~~s~~- 411 (540)
........+....-........++++....+|.++........+..... ++..+..+++
T Consensus 84 ~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~ 163 (302)
T smart00036 84 SARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSF 163 (302)
T ss_pred CccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccc
Q ss_pred -CCEEEEEecCCeEEEEEecC--CceeeeEeeCCcCCee-EEEeeeccCCCcEEEEeeCCCcEEEEECCC-CceeEeecC
Q 009188 412 -NKFLLVNLLNQEIHLWNIEG--EVKLVAKYKGHKRSRF-VIRSCFGGLEQAFIASGSEDSQVYIWHRAS-CDLIGALPG 486 (540)
Q Consensus 412 -~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~ 486 (540)
...+++|+..+...++++.. ....-..+........ ....++.-+++.++++- |....+-|... .......-.
T Consensus 164 ~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~ 241 (302)
T smart00036 164 ERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY--DEFGVFVNLYGKRRSRNPILH 241 (302)
T ss_pred cceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE--CcEEEEEeCCCCccccceEEE
Q ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccC--CCceEe
Q 009188 487 HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCH--SNGVHY 535 (540)
Q Consensus 487 h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~--~~~v~~ 535 (540)
-...+.++++.. .+++..+.++ |.|+++.++++.+...+ ...+.+
T Consensus 242 w~~~p~~~~~~~---pyll~~~~~~-ievr~l~~~~l~q~i~~~~~~~~r~ 288 (302)
T smart00036 242 WEFMPESFAYHS---PYLLAFHDNG-IEIRSIKTGELLQELADRETRKIRL 288 (302)
T ss_pred cCCcccEEEEEC---CEEEEEcCCc-EEEEECCCCceEEEEecCCCcceEE
No 498
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.13 E-value=16 Score=29.19 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=61.4
Q ss_pred EEEecCCCEEEEEeCCCcEEEEecCCceE--------EEeeccccceEEEEEEcc----CCCEEEEEecCCeEEEEECCC
Q 009188 324 CGWHPDRKWIFSGANDKSICMWELGGKEL--------ECWKGQRTLKISDLEVTS----DGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 324 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~v~~i~~~~----~~~~l~~~~~d~~i~~~d~~~ 391 (540)
-.|......|++++.-|.|.+++...... ..+... ...|++++-.+ ++.-++..+....+..||...
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 34555566788888888898888743211 111111 12566665443 233445555667899999888
Q ss_pred ce-EEEeecCCceeEEEEcC---CCCEEEEEecCCeEEEEEecCC
Q 009188 392 KV-ERYIEEDQTITSFSLSR---DNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 392 ~~-~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
.. .-+......++++.+-. ...-++..+.+..|.-||..+.
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 76 33444556777776633 1223333343556666665544
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.04 E-value=29 Score=32.14 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=60.9
Q ss_pred CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe------cCCeEEEEECCCceEEEeec------CCceeEEE
Q 009188 340 KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC------KESALLLLDREAKVERYIEE------DQTITSFS 407 (540)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~------~~~i~~~~ 407 (540)
..|++||..+.+....-..-.+.|+++.|..+.+.++.|. ....+..||..+..-..... .++++.+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 3699999988888777777777899999997777776664 35568899998887433332 36788877
Q ss_pred EcC-CC-CEEEEEe-cCC--eEEEEEe
Q 009188 408 LSR-DN-KFLLVNL-LNQ--EIHLWNI 429 (540)
Q Consensus 408 ~s~-~~-~~l~~~~-~dg--~i~i~d~ 429 (540)
+.. ++ ++.+.|. .++ .|..||=
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcC
Confidence 743 33 3444444 334 3555553
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.99 E-value=9.2 Score=39.42 Aligned_cols=295 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 009188 234 VWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV 313 (540)
Q Consensus 234 V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 313 (540)
++++.-+|.|+-++.++.||+|++|+.... ....+-.-..+-..+.|...| |+++..|..+.-|. ++|-..+.
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r----~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqq 89 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPR----RQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQ 89 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeeccc----chhhhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcchhh
Q ss_pred ee-----------------------cCCCcEEEEEEec-----CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEE
Q 009188 314 YE-----------------------KAGLGLVSCGWHP-----DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISD 365 (540)
Q Consensus 314 ~~-----------------------~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 365 (540)
+. .-.+.|..+...- .+++=.+--.-..|.+-|+.+........+..-.|..
T Consensus 90 fdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~aide 169 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDE 169 (1636)
T ss_pred ccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcchhh
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCce-----------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce
Q 009188 366 LEVTSDGKQIITMCKESALLLLDREAKV-----------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 366 i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
+.+.-..++++. ....++.+-|+.+.. ...+-....-.|+-|+...-.++--+.|+++--....-...
T Consensus 170 lkilgkdryli~-~ts~siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nageltlveyg~d~slg~vrte~~np 248 (1636)
T KOG3616|consen 170 LKILGKDRYLIA-HTSESIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGELTLVEYGNDDSLGSVRTEFMNP 248 (1636)
T ss_pred hhhccccceEEe-eccccEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCeeEEEEecCCCcchhhhhhhcCc
Q ss_pred eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc-----------------------------------EEE-EECCCC
Q 009188 435 LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ-----------------------------------VYI-WHRASC 478 (540)
Q Consensus 435 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~-----------------------------------i~i-wd~~~~ 478 (540)
.+....-.........--|.+.+...++--..=.+ |.| -|+-.|
T Consensus 249 hlisvqike~~qksygrnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvffiikakakifndlqlphi~ipvdli~g 328 (1636)
T KOG3616|consen 249 HLISVQIKEACQKSYGRNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFFIIKAKAKIFNDLQLPHIAIPVDLIGG 328 (1636)
T ss_pred eeeehHHHHHHHHhhCCCCCcchhhhHHHHhccccCceeeehhhhhhccccceeeehhhhhhcccccCcceeeeeecccC
Q ss_pred ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCceEeccC
Q 009188 479 DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGVHYCNG 538 (540)
Q Consensus 479 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v~~c~~ 538 (540)
+....+. |.+.|--+..+..+. -+.--..--.+.++|+.+.+..-......-+.|.++
T Consensus 329 ~~~~~in-h~~~vdwielne~~~-kllfrdkk~kl~l~di~s~qksmilnfcsymqwvp~ 386 (1636)
T KOG3616|consen 329 QNEGFIN-HEGAVDWIELNERAH-KLLFRDKKLKLHLVDIESCQKSMILNFCSYMQWVPG 386 (1636)
T ss_pred ccccccc-ccccccceeccchhh-hhhcccccceeEEEEcccchHHHHHHHhhhheeccC
Done!