Query 009188
Match_columns 540
No_of_seqs 984 out of 2773
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 20:48:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 6.3E-54 2.2E-58 424.1 40.0 288 224-519 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 2.9E-46 1E-50 356.3 44.4 293 221-519 22-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 2.6E-45 8.9E-50 353.3 48.1 292 219-517 43-340 (340)
4 4ery_A WD repeat-containing pr 100.0 7.5E-45 2.6E-49 346.1 43.8 294 221-519 13-311 (312)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.6E-45 2.9E-49 350.3 44.0 303 221-526 5-341 (345)
6 2ynn_A Coatomer subunit beta'; 100.0 7.7E-45 2.6E-49 344.3 42.8 291 222-520 4-302 (304)
7 2pbi_B Guanine nucleotide-bind 100.0 2.2E-44 7.6E-49 348.5 42.8 292 220-517 53-354 (354)
8 3frx_A Guanine nucleotide-bind 100.0 4.6E-43 1.6E-47 334.3 44.3 292 222-521 8-318 (319)
9 2xzm_R RACK1; ribosome, transl 100.0 4.2E-43 1.4E-47 338.5 43.4 295 221-521 11-341 (343)
10 3iz6_a 40S ribosomal protein R 100.0 2.6E-44 8.7E-49 351.9 35.1 298 220-522 55-377 (380)
11 4gqb_B Methylosome protein 50; 100.0 1.2E-43 4.2E-48 340.7 34.2 289 229-524 28-335 (344)
12 4g56_B MGC81050 protein; prote 100.0 2.5E-43 8.7E-48 341.3 31.7 290 227-522 38-345 (357)
13 1nr0_A Actin interacting prote 100.0 3E-42 1E-46 358.3 42.0 308 197-519 163-610 (611)
14 1erj_A Transcriptional repress 100.0 5E-42 1.7E-46 337.2 40.8 284 229-521 62-390 (393)
15 2hes_X YDR267CP; beta-propelle 100.0 1.4E-41 4.7E-46 325.8 42.8 293 221-521 4-329 (330)
16 1nr0_A Actin interacting prote 100.0 9.4E-42 3.2E-46 354.6 44.8 292 223-522 139-569 (611)
17 4aow_A Guanine nucleotide-bind 100.0 1.2E-40 4E-45 321.0 45.5 294 222-522 29-339 (340)
18 2ymu_A WD-40 repeat protein; u 100.0 7.7E-41 2.6E-45 346.5 43.8 299 198-517 278-577 (577)
19 2ynn_A Coatomer subunit beta'; 100.0 3.6E-41 1.2E-45 319.1 37.3 259 268-528 5-267 (304)
20 2ymu_A WD-40 repeat protein; u 100.0 7.2E-40 2.5E-44 339.2 45.7 320 198-539 237-561 (577)
21 3zwl_B Eukaryotic translation 100.0 6.6E-40 2.3E-44 319.3 41.5 292 223-524 24-350 (369)
22 1gxr_A ESG1, transducin-like e 100.0 4.1E-39 1.4E-43 309.7 43.3 286 225-518 45-335 (337)
23 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-39 8.6E-44 307.8 41.2 294 221-530 8-306 (313)
24 3dm0_A Maltose-binding peripla 100.0 1.6E-39 5.4E-44 343.5 43.0 291 223-520 374-693 (694)
25 1sq9_A Antiviral protein SKI8; 100.0 2.4E-40 8.3E-45 326.1 34.2 294 222-522 7-397 (397)
26 3i2n_A WD repeat-containing pr 100.0 1E-39 3.5E-44 316.6 35.7 298 220-523 7-356 (357)
27 3ei3_B DNA damage-binding prot 100.0 2.1E-39 7.2E-44 317.8 37.2 292 221-520 63-382 (383)
28 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-39 3.7E-44 318.4 34.9 292 226-523 3-364 (372)
29 3k26_A Polycomb protein EED; W 100.0 2.9E-39 1E-43 314.4 35.7 290 225-520 12-366 (366)
30 1vyh_C Platelet-activating fac 100.0 5.3E-39 1.8E-43 317.3 37.3 253 271-528 103-377 (410)
31 4e54_B DNA damage-binding prot 100.0 1E-39 3.5E-44 325.3 29.8 295 224-524 112-434 (435)
32 3ow8_A WD repeat-containing pr 100.0 1.7E-38 5.9E-43 302.6 36.1 269 196-476 50-320 (321)
33 1r5m_A SIR4-interacting protei 100.0 2.7E-38 9.2E-43 314.1 36.4 279 230-519 107-424 (425)
34 1r5m_A SIR4-interacting protei 100.0 2.8E-38 9.5E-43 314.0 36.3 287 228-522 42-363 (425)
35 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-37 5.4E-42 335.0 43.0 297 222-525 4-307 (814)
36 2pm9_A Protein WEB1, protein t 100.0 3.2E-39 1.1E-43 320.2 27.2 311 201-521 42-415 (416)
37 2pm9_A Protein WEB1, protein t 100.0 2.4E-39 8.1E-44 321.1 26.1 291 230-524 11-341 (416)
38 3gre_A Serine/threonine-protei 100.0 1.7E-38 5.7E-43 317.2 32.3 296 219-517 50-437 (437)
39 3dwl_C Actin-related protein 2 100.0 2.8E-39 9.7E-44 316.2 25.8 288 226-518 6-377 (377)
40 4a11_B DNA excision repair pro 100.0 1.8E-37 6.1E-42 306.5 38.7 303 221-526 33-371 (408)
41 1got_B GT-beta; complex (GTP-b 100.0 2.1E-37 7.3E-42 298.0 37.1 267 196-474 69-340 (340)
42 3v7d_B Cell division control p 100.0 1.4E-36 4.7E-41 305.8 44.0 288 222-526 112-427 (464)
43 3vl1_A 26S proteasome regulato 100.0 4.1E-38 1.4E-42 312.7 31.4 309 197-520 71-419 (420)
44 4gga_A P55CDC, cell division c 100.0 1.4E-36 4.8E-41 301.3 42.0 283 233-526 107-401 (420)
45 4aez_A CDC20, WD repeat-contai 100.0 2.9E-37 1E-41 304.3 36.6 291 225-526 85-386 (401)
46 3sfz_A APAF-1, apoptotic pepti 100.0 8E-37 2.7E-41 344.1 44.5 306 223-533 607-1047(1249)
47 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-37 3.7E-42 300.9 32.1 297 224-525 4-342 (351)
48 1gxr_A ESG1, transducin-like e 100.0 2.7E-37 9.2E-42 297.0 34.7 293 230-533 8-309 (337)
49 1yfq_A Cell cycle arrest prote 100.0 4.9E-37 1.7E-41 296.0 36.5 287 224-518 4-322 (342)
50 4h5i_A Guanine nucleotide-exch 100.0 9.1E-38 3.1E-42 303.1 31.3 284 231-521 14-344 (365)
51 4ggc_A P55CDC, cell division c 100.0 8.9E-36 3E-40 284.0 41.6 293 219-522 9-317 (318)
52 3frx_A Guanine nucleotide-bind 100.0 1.3E-36 4.6E-41 289.6 35.6 275 196-478 32-318 (319)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.8E-36 2.7E-40 298.5 41.6 284 223-527 110-398 (445)
54 3vl1_A 26S proteasome regulato 100.0 1.1E-37 3.9E-42 309.5 27.9 281 232-521 57-366 (420)
55 4g56_B MGC81050 protein; prote 100.0 5.4E-37 1.8E-41 296.9 31.0 287 236-533 10-314 (357)
56 4ery_A WD repeat-containing pr 100.0 6.4E-36 2.2E-40 284.3 37.7 259 266-528 13-276 (312)
57 4gqb_B Methylosome protein 50; 100.0 5.4E-36 1.9E-40 287.5 37.4 248 227-480 78-334 (344)
58 1p22_A F-BOX/WD-repeat protein 100.0 4.5E-36 1.5E-40 299.2 36.7 281 224-526 126-420 (435)
59 2pbi_B Guanine nucleotide-bind 100.0 1.7E-35 5.7E-40 286.2 38.9 261 268-533 56-329 (354)
60 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-35 9.1E-40 294.6 41.6 297 197-520 132-442 (445)
61 3dw8_B Serine/threonine-protei 100.0 2.8E-36 9.7E-41 301.9 34.3 286 229-519 26-445 (447)
62 3mmy_A MRNA export factor; mRN 100.0 6E-36 2.1E-40 291.2 35.4 299 217-521 25-347 (368)
63 3bg1_A Protein SEC13 homolog; 100.0 1.6E-36 5.4E-41 288.7 29.8 267 225-519 7-292 (316)
64 2xzm_R RACK1; ribosome, transl 100.0 8.7E-36 3E-40 287.2 35.2 275 196-479 41-342 (343)
65 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.9E-35 1.3E-39 282.7 39.3 253 266-522 5-285 (345)
66 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-37 8.8E-42 311.5 24.2 316 197-521 176-518 (524)
67 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-35 5.6E-40 333.4 40.9 301 218-527 644-1081(1249)
68 2hes_X YDR267CP; beta-propelle 100.0 2.4E-35 8.1E-40 282.4 36.0 273 196-477 26-328 (330)
69 1pgu_A Actin interacting prote 100.0 1.3E-34 4.5E-39 302.0 44.3 308 221-539 150-596 (615)
70 2pm7_B Protein transport prote 100.0 2.6E-35 9E-40 277.7 35.3 246 271-520 4-285 (297)
71 3iz6_a 40S ribosomal protein R 100.0 1.4E-36 4.9E-41 296.9 27.4 256 267-526 57-335 (380)
72 2pm7_B Protein transport prote 100.0 1.6E-35 5.3E-40 279.3 33.4 248 225-476 3-284 (297)
73 1pgu_A Actin interacting prote 100.0 5.6E-35 1.9E-39 304.8 40.1 303 203-519 38-365 (615)
74 3v7d_B Cell division control p 100.0 1.3E-34 4.6E-39 291.2 41.2 299 196-517 134-460 (464)
75 1erj_A Transcriptional repress 100.0 8.6E-35 2.9E-39 285.6 38.1 254 274-533 62-355 (393)
76 2oaj_A Protein SNI1; WD40 repe 100.0 9.6E-36 3.3E-40 320.5 32.7 316 197-525 72-669 (902)
77 2oaj_A Protein SNI1; WD40 repe 100.0 6.4E-35 2.2E-39 314.1 36.4 200 226-432 12-243 (902)
78 3jrp_A Fusion protein of prote 100.0 5.6E-34 1.9E-38 278.5 34.5 254 222-479 2-289 (379)
79 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-33 4.7E-38 304.2 37.5 307 198-521 29-387 (814)
80 3dm0_A Maltose-binding peripla 100.0 2.2E-33 7.4E-38 296.5 36.7 271 199-476 400-692 (694)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-34 3.7E-39 286.1 24.5 286 233-524 36-346 (402)
82 4aow_A Guanine nucleotide-bind 100.0 1.2E-32 4E-37 265.1 38.1 254 264-524 26-290 (340)
83 3jrp_A Fusion protein of prote 100.0 3.4E-33 1.2E-37 272.9 33.8 249 269-521 4-288 (379)
84 3zwl_B Eukaryotic translation 100.0 3.6E-32 1.2E-36 264.5 40.2 255 267-527 23-311 (369)
85 2j04_B YDR362CP, TAU91; beta p 100.0 3.5E-34 1.2E-38 288.7 26.4 275 222-504 125-458 (524)
86 4aez_A CDC20, WD repeat-contai 100.0 7.4E-33 2.5E-37 272.8 34.0 273 198-485 107-388 (401)
87 2xyi_A Probable histone-bindin 100.0 5.4E-33 1.8E-37 276.3 33.2 251 270-523 122-413 (430)
88 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-32 3.7E-37 275.9 34.6 284 231-520 4-391 (450)
89 1sq9_A Antiviral protein SKI8; 100.0 3.2E-33 1.1E-37 275.1 29.9 278 196-479 28-397 (397)
90 3odt_A Protein DOA1; ubiquitin 100.0 6.5E-32 2.2E-36 256.5 37.0 254 264-529 6-264 (313)
91 3ei3_B DNA damage-binding prot 100.0 2.5E-32 8.5E-37 267.5 34.2 255 267-528 64-347 (383)
92 3gre_A Serine/threonine-protei 100.0 8.3E-34 2.8E-38 283.2 23.3 277 238-528 34-367 (437)
93 3jro_A Fusion protein of prote 100.0 5.2E-33 1.8E-37 295.2 30.7 267 224-522 2-287 (753)
94 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-32 7.5E-37 266.6 31.8 244 272-520 4-274 (372)
95 2j04_A TAU60, YPL007P, hypothe 100.0 2E-33 6.8E-38 275.8 23.8 261 229-519 13-296 (588)
96 4gga_A P55CDC, cell division c 100.0 6.1E-32 2.1E-36 268.0 34.6 281 200-496 121-414 (420)
97 3k26_A Polycomb protein EED; W 100.0 3.9E-33 1.3E-37 271.2 24.8 265 198-477 38-366 (366)
98 3dwl_C Actin-related protein 2 100.0 1.7E-33 5.7E-38 275.2 21.0 242 272-519 7-280 (377)
99 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-31 4.7E-36 258.8 32.3 283 222-524 10-340 (355)
100 3dw8_B Serine/threonine-protei 100.0 3.8E-32 1.3E-36 271.9 29.2 246 274-525 26-378 (447)
101 1yfq_A Cell cycle arrest prote 100.0 1.1E-31 3.8E-36 258.5 30.6 252 271-529 6-291 (342)
102 3i2n_A WD repeat-containing pr 100.0 6E-32 2E-36 261.9 28.0 265 203-480 43-356 (357)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 3.7E-32 1.3E-36 268.0 26.8 275 198-480 51-345 (402)
104 3bws_A Protein LP49; two-domai 100.0 1.1E-30 3.7E-35 260.2 37.1 287 222-520 114-432 (433)
105 4e54_B DNA damage-binding prot 100.0 5.2E-32 1.8E-36 269.7 25.7 251 272-526 115-393 (435)
106 1l0q_A Surface layer protein; 100.0 4.3E-30 1.5E-34 252.3 39.0 271 244-526 3-281 (391)
107 4a11_B DNA excision repair pro 100.0 7.6E-31 2.6E-35 258.9 33.8 314 196-520 58-405 (408)
108 1p22_A F-BOX/WD-repeat protein 100.0 7.8E-31 2.7E-35 261.3 30.1 275 198-498 147-434 (435)
109 3mmy_A MRNA export factor; mRN 100.0 3.5E-30 1.2E-34 250.4 34.0 269 267-539 30-327 (368)
110 4h5i_A Guanine nucleotide-exch 100.0 1.1E-30 3.7E-35 253.3 30.3 246 225-478 67-344 (365)
111 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-31 4.9E-36 257.8 23.9 267 238-520 43-333 (343)
112 4gq1_A NUP37; propeller, trans 100.0 1E-31 3.5E-36 263.6 22.0 271 226-518 84-387 (393)
113 2xyi_A Probable histone-bindin 100.0 1.5E-30 5.1E-35 258.6 29.7 252 224-478 121-411 (430)
114 1l0q_A Surface layer protein; 100.0 7.2E-29 2.5E-33 243.6 41.4 307 198-523 6-345 (391)
115 2j04_A TAU60, YPL007P, hypothe 100.0 7.3E-32 2.5E-36 264.7 19.2 244 229-509 83-350 (588)
116 4ggc_A P55CDC, cell division c 100.0 1.6E-29 5.5E-34 240.6 34.2 264 200-479 41-317 (318)
117 2w18_A PALB2, fancn, partner a 100.0 1.4E-28 4.8E-33 226.8 30.0 274 234-518 42-355 (356)
118 3bg1_A Protein SEC13 homolog; 100.0 7.7E-30 2.6E-34 242.5 22.2 230 196-431 27-293 (316)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-28 4E-33 246.6 31.8 239 277-521 5-342 (450)
120 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-28 5.4E-33 237.3 30.7 248 257-522 3-273 (355)
121 3bws_A Protein LP49; two-domai 100.0 7.1E-28 2.4E-32 239.9 32.3 290 230-527 59-397 (433)
122 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-28 7.2E-33 235.7 26.3 282 196-484 25-344 (351)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-28 4.3E-33 237.2 22.3 230 283-522 43-294 (343)
124 3jro_A Fusion protein of prote 100.0 3.1E-28 1.1E-32 258.6 22.8 231 196-432 23-286 (753)
125 1nir_A Nitrite reductase; hemo 100.0 9.3E-26 3.2E-30 229.2 36.0 313 200-528 155-522 (543)
126 1nir_A Nitrite reductase; hemo 100.0 3.8E-26 1.3E-30 232.0 31.6 276 238-524 144-462 (543)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.7E-26 5.9E-31 227.6 25.5 292 231-533 62-400 (415)
128 2ecf_A Dipeptidyl peptidase IV 100.0 3E-26 1E-30 244.2 28.6 284 231-522 36-416 (741)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.8E-26 3.3E-30 222.3 28.8 278 205-500 94-409 (415)
130 4gq1_A NUP37; propeller, trans 99.9 9.2E-27 3.1E-31 228.3 20.4 230 196-431 103-389 (393)
131 2w18_A PALB2, fancn, partner a 99.9 1.2E-25 4.2E-30 207.3 24.7 195 231-429 111-355 (356)
132 3u4y_A Uncharacterized protein 99.9 1.9E-24 6.4E-29 206.9 29.7 291 237-537 3-323 (331)
133 1ri6_A Putative isomerase YBHE 99.9 1.6E-24 5.4E-29 208.3 28.8 273 245-523 7-313 (343)
134 2ojh_A Uncharacterized protein 99.9 1.3E-23 4.3E-28 197.3 26.8 252 248-510 17-292 (297)
135 2z3z_A Dipeptidyl aminopeptida 99.9 2.6E-23 8.8E-28 220.2 31.8 280 232-522 82-437 (706)
136 3vgz_A Uncharacterized protein 99.9 3.1E-22 1E-26 193.2 35.9 269 230-509 39-334 (353)
137 1pby_B Quinohemoprotein amine 99.9 1.6E-23 5.4E-28 200.8 25.6 271 244-527 2-317 (337)
138 1xfd_A DIP, dipeptidyl aminope 99.9 4E-24 1.4E-28 227.1 23.2 281 233-520 18-393 (723)
139 3hfq_A Uncharacterized protein 99.9 3.6E-22 1.2E-26 192.4 34.4 273 251-525 14-324 (347)
140 2ecf_A Dipeptidyl peptidase IV 99.9 4E-23 1.4E-27 220.0 29.0 281 233-521 110-460 (741)
141 2z3z_A Dipeptidyl aminopeptida 99.9 6.4E-23 2.2E-27 217.2 30.1 283 234-524 28-395 (706)
142 1k32_A Tricorn protease; prote 99.9 6.9E-23 2.3E-27 225.7 31.2 294 222-529 43-470 (1045)
143 1k32_A Tricorn protease; prote 99.9 1.2E-22 4E-27 223.9 30.2 285 223-521 195-503 (1045)
144 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-22 6.1E-27 214.4 28.8 309 201-521 34-444 (723)
145 3o4h_A Acylamino-acid-releasin 99.9 1.4E-22 4.6E-27 209.6 26.4 271 231-520 21-315 (582)
146 1ri6_A Putative isomerase YBHE 99.9 1.5E-21 5.2E-26 187.4 31.9 288 201-500 12-334 (343)
147 1jmx_B Amine dehydrogenase; ox 99.9 8.3E-22 2.8E-26 189.8 26.5 273 236-532 4-337 (349)
148 3pe7_A Oligogalacturonate lyas 99.9 7.4E-22 2.5E-26 193.3 24.1 295 220-519 19-381 (388)
149 3vgz_A Uncharacterized protein 99.9 9E-21 3.1E-25 182.9 30.9 247 277-527 41-310 (353)
150 3u4y_A Uncharacterized protein 99.9 6.3E-21 2.2E-25 182.3 28.3 235 283-523 4-255 (331)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 6.4E-21 2.2E-25 188.4 28.8 201 231-432 36-279 (434)
152 3scy_A Hypothetical bacterial 99.9 7.6E-20 2.6E-24 177.1 35.5 278 243-526 13-345 (361)
153 2ojh_A Uncharacterized protein 99.9 5.8E-21 2E-25 179.0 26.7 227 293-525 17-263 (297)
154 3scy_A Hypothetical bacterial 99.9 2.6E-19 9E-24 173.3 35.1 262 230-497 48-360 (361)
155 1pby_B Quinohemoprotein amine 99.9 1.3E-20 4.6E-25 180.3 23.9 270 198-488 5-321 (337)
156 3hfq_A Uncharacterized protein 99.9 2.6E-19 8.9E-24 172.3 32.2 249 228-481 36-323 (347)
157 1z68_A Fibroblast activation p 99.9 7.8E-21 2.7E-25 201.6 19.7 276 236-520 20-391 (719)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 1.4E-19 4.7E-24 178.9 26.9 202 229-430 90-332 (434)
159 1z68_A Fibroblast activation p 99.9 4.5E-20 1.5E-24 195.7 23.7 293 221-524 46-447 (719)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.8E-19 2E-23 171.0 28.3 276 245-522 4-343 (365)
161 3c5m_A Oligogalacturonate lyas 99.8 4.7E-20 1.6E-24 180.9 19.1 291 221-524 20-388 (396)
162 3o4h_A Acylamino-acid-releasin 99.8 7.9E-20 2.7E-24 188.8 21.2 233 276-524 21-278 (582)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.7E-18 1.6E-22 164.6 27.4 244 230-478 38-342 (365)
164 2oiz_A Aromatic amine dehydrog 99.8 3.1E-18 1.1E-22 165.1 24.8 287 242-539 14-359 (361)
165 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-18 4.9E-23 184.3 24.5 268 233-509 18-383 (740)
166 3azo_A Aminopeptidase; POP fam 99.8 4.2E-18 1.4E-22 178.8 27.2 293 225-525 17-374 (662)
167 2dg1_A DRP35, lactonase; beta 99.8 2.4E-17 8.3E-22 157.5 29.7 270 232-509 6-300 (333)
168 1q7f_A NHL, brain tumor CG1071 99.8 7.1E-17 2.4E-21 150.6 32.2 242 274-522 27-282 (286)
169 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-17 1.2E-21 156.0 29.4 241 276-521 23-323 (329)
170 2gop_A Trilobed protease; beta 99.8 5.3E-17 1.8E-21 156.0 30.0 260 232-524 15-334 (347)
171 1q7f_A NHL, brain tumor CG1071 99.8 1.5E-16 5.3E-21 148.4 31.5 243 228-479 26-282 (286)
172 2oiz_A Aromatic amine dehydrog 99.8 6.6E-17 2.3E-21 155.8 28.8 266 221-501 41-360 (361)
173 3pe7_A Oligogalacturonate lyas 99.8 2.3E-17 7.8E-22 161.3 25.5 256 268-526 22-335 (388)
174 1jmx_B Amine dehydrogenase; ox 99.8 4.2E-17 1.4E-21 156.8 25.3 268 199-487 16-335 (349)
175 2xdw_A Prolyl endopeptidase; a 99.8 7.4E-16 2.5E-20 162.7 33.4 279 241-522 81-416 (710)
176 4a5s_A Dipeptidyl peptidase 4 99.8 5.7E-17 1.9E-21 172.0 24.6 293 221-523 46-452 (740)
177 2z2n_A Virginiamycin B lyase; 99.8 1.5E-14 5.2E-19 135.5 38.7 282 227-522 10-297 (299)
178 3e5z_A Putative gluconolactona 99.7 3.9E-15 1.3E-19 139.5 31.3 244 272-526 23-292 (296)
179 3azo_A Aminopeptidase; POP fam 99.7 4E-16 1.4E-20 163.8 25.7 248 272-524 19-329 (662)
180 3fvz_A Peptidyl-glycine alpha- 99.7 1.9E-15 6.5E-20 143.9 27.2 239 231-477 23-322 (329)
181 2bkl_A Prolyl endopeptidase; m 99.7 3.6E-16 1.2E-20 164.6 24.3 280 241-524 77-401 (695)
182 1qks_A Cytochrome CD1 nitrite 99.7 5.7E-14 2E-18 142.2 39.2 300 221-528 187-546 (567)
183 3c5m_A Oligogalacturonate lyas 99.7 1.4E-16 4.8E-21 156.0 17.4 241 279-526 38-335 (396)
184 1rwi_B Serine/threonine-protei 99.7 4.8E-15 1.6E-19 136.9 26.5 241 278-524 25-268 (270)
185 3dsm_A Uncharacterized protein 99.7 8.6E-15 2.9E-19 139.2 28.8 261 251-526 15-307 (328)
186 1qks_A Cytochrome CD1 nitrite 99.7 4.5E-14 1.6E-18 142.9 34.1 273 241-521 165-478 (567)
187 2gop_A Trilobed protease; beta 99.7 8.7E-15 3E-19 140.5 26.7 225 277-526 15-297 (347)
188 2xdw_A Prolyl endopeptidase; a 99.7 1.7E-14 6E-19 152.2 30.1 241 229-479 122-416 (710)
189 3e5z_A Putative gluconolactona 99.7 3.3E-14 1.1E-18 133.2 28.8 246 221-481 17-290 (296)
190 3no2_A Uncharacterized protein 99.7 3.9E-14 1.3E-18 130.6 28.6 217 242-465 4-231 (276)
191 2bkl_A Prolyl endopeptidase; m 99.7 2.6E-15 8.8E-20 158.1 23.4 241 229-480 118-400 (695)
192 2qc5_A Streptogramin B lactona 99.7 7.4E-13 2.5E-17 124.0 37.4 278 229-519 17-299 (300)
193 1yr2_A Prolyl oligopeptidase; 99.7 2.3E-14 7.8E-19 152.0 30.1 276 241-523 116-444 (741)
194 3no2_A Uncharacterized protein 99.7 5.1E-14 1.7E-18 129.8 28.2 231 287-526 4-258 (276)
195 2mad_H Methylamine dehydrogena 99.7 6E-13 2.1E-17 128.1 35.5 275 240-526 29-356 (373)
196 2dg1_A DRP35, lactonase; beta 99.7 2.6E-13 8.9E-18 129.4 32.7 239 221-468 34-301 (333)
197 3sjl_D Methylamine dehydrogena 99.7 1.6E-13 5.3E-18 130.3 30.0 285 239-536 40-382 (386)
198 1rwi_B Serine/threonine-protei 99.7 2.3E-14 7.9E-19 132.2 23.3 239 233-480 25-267 (270)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 2.4E-13 8.3E-18 128.3 30.9 244 273-521 14-300 (314)
200 2z2n_A Virginiamycin B lyase; 99.6 7.2E-12 2.5E-16 117.2 35.6 241 272-522 10-256 (299)
201 3g4e_A Regucalcin; six bladed 99.6 3.3E-12 1.1E-16 119.4 31.9 230 274-510 10-263 (297)
202 3dsm_A Uncharacterized protein 99.6 1E-12 3.5E-17 124.8 28.2 250 232-496 44-319 (328)
203 3c75_H MADH, methylamine dehyd 99.6 2.3E-12 7.8E-17 124.6 27.1 274 241-527 82-409 (426)
204 1yr2_A Prolyl oligopeptidase; 99.5 7.8E-13 2.7E-17 140.2 25.1 242 229-480 160-444 (741)
205 2qc5_A Streptogramin B lactona 99.5 1.7E-10 6E-15 107.7 37.1 242 273-523 16-262 (300)
206 3hrp_A Uncharacterized protein 99.5 1.3E-11 4.4E-16 120.6 29.4 236 232-475 131-408 (409)
207 3sjl_D Methylamine dehydrogena 99.5 3.7E-12 1.3E-16 120.8 24.1 265 220-499 68-384 (386)
208 3hrp_A Uncharacterized protein 99.5 1.4E-11 4.8E-16 120.3 28.1 234 277-518 131-408 (409)
209 2ghs_A AGR_C_1268P; regucalcin 99.5 7.3E-11 2.5E-15 111.8 32.2 223 279-510 51-293 (326)
210 2mad_H Methylamine dehydrogena 99.5 2.3E-10 7.9E-15 110.1 36.0 248 221-484 57-357 (373)
211 1xip_A Nucleoporin NUP159; bet 99.5 6.7E-12 2.3E-16 119.6 24.5 173 233-419 39-232 (388)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.7E-11 9.1E-16 114.2 27.7 241 228-477 14-299 (314)
213 3dr2_A Exported gluconolactona 99.5 4.3E-11 1.5E-15 112.3 26.3 229 273-514 41-301 (305)
214 2qe8_A Uncharacterized protein 99.4 7.9E-12 2.7E-16 119.5 21.1 266 232-517 17-318 (343)
215 3iuj_A Prolyl endopeptidase; h 99.4 3E-11 1E-15 126.8 25.5 242 274-524 126-409 (693)
216 1mda_H Methylamine dehydrogena 99.4 2E-11 6.9E-16 116.1 21.5 265 254-536 47-365 (368)
217 3c75_H MADH, methylamine dehyd 99.4 5.8E-11 2E-15 114.9 24.6 251 220-484 108-409 (426)
218 3iuj_A Prolyl endopeptidase; h 99.4 5E-11 1.7E-15 125.1 23.4 239 229-480 126-408 (693)
219 3g4e_A Regucalcin; six bladed 99.4 1.5E-09 5E-14 101.4 30.8 227 227-465 8-260 (297)
220 3dr2_A Exported gluconolactona 99.3 3.4E-10 1.2E-14 106.2 24.8 235 223-474 36-303 (305)
221 1xip_A Nucleoporin NUP159; bet 99.3 7.1E-11 2.4E-15 112.6 17.2 170 278-463 39-230 (388)
222 2ghs_A AGR_C_1268P; regucalcin 99.3 8.6E-09 2.9E-13 97.5 31.7 220 232-465 49-290 (326)
223 1yiq_A Quinohemoprotein alcoho 99.3 5.3E-10 1.8E-14 116.5 23.1 279 243-530 70-515 (689)
224 1kb0_A Quinohemoprotein alcoho 99.3 5.3E-10 1.8E-14 116.3 22.5 279 243-530 77-517 (677)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.3 6.9E-09 2.3E-13 100.4 29.1 258 242-517 102-375 (376)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5E-09 1.7E-13 101.4 27.9 267 242-527 52-344 (376)
227 1yiq_A Quinohemoprotein alcoho 99.2 1.4E-09 4.9E-14 113.3 25.5 258 242-508 120-537 (689)
228 1kb0_A Quinohemoprotein alcoho 99.2 2.2E-09 7.4E-14 111.7 25.7 269 242-520 127-567 (677)
229 1mda_H Methylamine dehydrogena 99.2 8.9E-10 3E-14 104.8 19.5 256 220-498 55-366 (368)
230 1npe_A Nidogen, entactin; glyc 99.2 4.4E-08 1.5E-12 89.7 28.1 250 244-500 2-262 (267)
231 2hz6_A Endoplasmic reticulum t 99.1 5.1E-11 1.8E-15 114.8 6.9 202 287-500 8-215 (369)
232 1fwx_A Nitrous oxide reductase 99.1 1.3E-08 4.5E-13 100.7 23.3 233 287-525 100-436 (595)
233 2ece_A 462AA long hypothetical 99.1 6.4E-08 2.2E-12 92.5 26.9 224 241-465 93-399 (462)
234 3hxj_A Pyrrolo-quinoline quino 99.1 2.5E-09 8.7E-14 101.3 17.3 269 229-522 57-326 (330)
235 3hxj_A Pyrrolo-quinoline quino 99.1 8.3E-10 2.8E-14 104.7 12.3 264 237-526 25-289 (330)
236 2qe8_A Uncharacterized protein 99.1 1E-08 3.6E-13 97.7 19.9 222 229-470 64-314 (343)
237 2hz6_A Endoplasmic reticulum t 99.0 2.9E-11 1E-15 116.5 1.1 260 242-519 8-278 (369)
238 2fp8_A Strictosidine synthase; 99.0 2.8E-07 9.4E-12 86.9 28.3 237 277-521 19-314 (322)
239 1fwx_A Nitrous oxide reductase 99.0 4.4E-08 1.5E-12 96.9 22.6 234 241-479 99-433 (595)
240 4a2l_A BT_4663, two-component 99.0 1.9E-06 6.3E-11 92.1 35.4 278 234-524 175-484 (795)
241 2ece_A 462AA long hypothetical 99.0 6.7E-07 2.3E-11 85.5 27.8 221 286-507 93-399 (462)
242 1kv9_A Type II quinohemoprotei 99.0 5.7E-08 1.9E-12 101.0 22.5 277 243-529 66-497 (668)
243 4a2l_A BT_4663, two-component 98.9 5.5E-06 1.9E-10 88.4 37.6 278 231-523 309-617 (795)
244 2iwa_A Glutamine cyclotransfer 98.9 2.3E-07 7.8E-12 83.3 22.0 208 309-522 10-239 (266)
245 2fp8_A Strictosidine synthase; 98.9 8.3E-07 2.8E-11 83.6 26.1 234 232-476 19-312 (322)
246 1npe_A Nidogen, entactin; glyc 98.9 2.8E-06 9.4E-11 77.6 28.8 204 232-440 36-246 (267)
247 2iwa_A Glutamine cyclotransfer 98.9 1.2E-06 4.1E-11 78.6 24.8 201 222-431 10-237 (266)
248 2p4o_A Hypothetical protein; p 98.8 2.2E-05 7.4E-10 73.2 32.1 231 268-508 24-277 (306)
249 2p4o_A Hypothetical protein; p 98.8 1.3E-05 4.3E-10 74.8 30.5 205 219-431 20-242 (306)
250 1w6s_A Methanol dehydrogenase 98.8 1.5E-06 5E-11 88.4 25.1 281 243-531 62-514 (599)
251 3nol_A Glutamine cyclotransfer 98.8 8.7E-07 3E-11 78.5 20.0 191 310-507 33-243 (262)
252 1kv9_A Type II quinohemoprotei 98.8 1.5E-06 5.3E-11 90.2 25.2 257 243-508 117-520 (668)
253 2ad6_A Methanol dehydrogenase 98.8 1.9E-06 6.5E-11 87.6 25.1 276 243-528 62-502 (571)
254 3v9f_A Two-component system se 98.8 3E-05 1E-09 82.6 35.3 279 232-523 211-527 (781)
255 3v9f_A Two-component system se 98.7 5.5E-05 1.9E-09 80.5 36.3 283 231-524 257-572 (781)
256 1k3i_A Galactose oxidase precu 98.7 5.2E-07 1.8E-11 93.9 20.0 269 236-509 190-530 (656)
257 3v64_C Agrin; beta propeller, 98.7 1.7E-05 5.8E-10 75.3 28.4 253 232-495 34-293 (349)
258 1w6s_A Methanol dehydrogenase 98.7 5.5E-06 1.9E-10 84.2 26.0 261 237-507 111-534 (599)
259 1flg_A Protein (quinoprotein e 98.7 1.2E-05 4.2E-10 81.8 28.7 282 243-532 68-528 (582)
260 2xtc_A F-box-like/WD repeat-co 98.7 2.2E-08 7.5E-13 70.7 5.5 36 19-54 2-37 (90)
261 3tc9_A Hypothetical hydrolase; 98.7 6E-06 2E-10 80.8 24.7 238 278-519 138-429 (430)
262 3nol_A Glutamine cyclotransfer 98.7 4.7E-06 1.6E-10 73.8 21.4 187 222-420 32-244 (262)
263 2ad6_A Methanol dehydrogenase 98.7 4E-06 1.4E-10 85.3 24.1 269 243-520 115-542 (571)
264 1ijq_A LDL receptor, low-densi 98.7 8.8E-05 3E-09 69.3 31.4 232 245-486 3-247 (316)
265 1flg_A Protein (quinoprotein e 98.7 1.6E-05 5.5E-10 80.9 27.8 254 243-508 117-548 (582)
266 3mbr_X Glutamine cyclotransfer 98.7 2E-05 6.8E-10 69.2 24.4 192 309-508 10-223 (243)
267 3nok_A Glutaminyl cyclase; bet 98.6 5.8E-06 2E-10 73.2 20.6 193 309-508 44-254 (268)
268 3p5b_L Low density lipoprotein 98.6 0.00011 3.7E-09 71.2 31.8 242 245-496 85-339 (400)
269 2xe4_A Oligopeptidase B; hydro 98.6 7.3E-06 2.5E-10 86.5 25.4 240 278-523 175-461 (751)
270 2xbg_A YCF48-like protein; pho 98.6 0.00027 9.1E-09 66.4 32.3 273 231-518 35-320 (327)
271 3v65_B Low-density lipoprotein 98.6 5.1E-05 1.7E-09 73.1 27.9 252 234-496 79-337 (386)
272 3mbr_X Glutamine cyclotransfer 98.6 3.9E-05 1.3E-09 67.4 24.3 189 222-420 10-223 (243)
273 3v64_C Agrin; beta propeller, 98.6 0.00019 6.5E-09 68.0 30.9 235 280-524 37-279 (349)
274 3nok_A Glutaminyl cyclase; bet 98.6 2.1E-05 7.1E-10 69.7 22.2 188 222-419 44-253 (268)
275 3qqz_A Putative uncharacterize 98.5 0.00026 8.9E-09 63.0 27.8 200 225-428 20-250 (255)
276 1ijq_A LDL receptor, low-densi 98.5 0.00086 3E-08 62.5 32.5 220 297-524 9-242 (316)
277 2xe4_A Oligopeptidase B; hydro 98.5 2.7E-05 9.1E-10 82.2 24.5 194 229-429 170-398 (751)
278 3v65_B Low-density lipoprotein 98.5 0.00021 7.1E-09 68.8 28.5 235 281-524 81-322 (386)
279 3tc9_A Hypothetical hydrolase; 98.4 5.3E-05 1.8E-09 74.1 23.9 153 233-391 138-301 (430)
280 3sov_A LRP-6, low-density lipo 98.4 0.00056 1.9E-08 63.7 28.7 242 245-495 6-256 (318)
281 3p5b_L Low density lipoprotein 98.4 0.0009 3.1E-08 64.7 31.0 202 230-432 110-321 (400)
282 1k3i_A Galactose oxidase precu 98.4 6.2E-06 2.1E-10 85.8 16.5 240 281-522 190-499 (656)
283 4hw6_A Hypothetical protein, I 98.4 8.9E-05 3E-09 72.5 23.7 236 278-519 140-432 (433)
284 3kya_A Putative phosphatase; s 98.3 0.00014 4.7E-09 71.3 23.9 244 278-525 140-480 (496)
285 3m0c_C LDL receptor, low-densi 98.3 0.00064 2.2E-08 71.3 29.4 224 253-485 404-640 (791)
286 3qqz_A Putative uncharacterize 98.3 0.00075 2.6E-08 60.1 25.3 201 313-518 21-251 (255)
287 4hw6_A Hypothetical protein, I 98.3 0.00049 1.7E-08 67.2 26.0 194 232-430 139-373 (433)
288 3sov_A LRP-6, low-density lipo 98.2 0.00051 1.7E-08 64.0 24.6 222 297-525 12-243 (318)
289 2p9w_A MAL S 1 allergenic prot 98.2 0.0012 4.2E-08 60.5 25.2 205 273-479 9-267 (334)
290 2ism_A Putative oxidoreductase 98.2 0.0021 7.3E-08 60.8 27.3 223 276-507 30-332 (352)
291 2p9w_A MAL S 1 allergenic prot 98.1 0.0006 2.1E-08 62.5 21.6 159 233-393 14-217 (334)
292 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0077 2.6E-07 61.7 31.6 231 245-484 8-244 (628)
293 3s94_A LRP-6, low-density lipo 98.1 0.011 3.6E-07 60.6 32.2 284 232-521 84-424 (619)
294 3m0c_C LDL receptor, low-densi 98.1 0.0038 1.3E-07 65.5 29.3 202 230-432 422-633 (791)
295 3kya_A Putative phosphatase; s 98.1 0.00079 2.7E-08 66.0 22.6 193 233-429 140-408 (496)
296 3s94_A LRP-6, low-density lipo 98.0 0.016 5.5E-07 59.2 35.1 199 231-432 39-244 (619)
297 3amr_A 3-phytase; beta-propell 98.0 0.0035 1.2E-07 58.0 24.8 195 287-485 39-272 (355)
298 2xbg_A YCF48-like protein; pho 98.0 0.0056 1.9E-07 57.3 26.5 231 231-475 79-320 (327)
299 3a9g_A Putative uncharacterize 98.0 0.011 3.7E-07 55.9 28.1 229 276-508 28-330 (354)
300 3ei3_A DNA damage-binding prot 97.9 0.029 9.8E-07 61.6 34.1 284 231-525 553-918 (1158)
301 3amr_A 3-phytase; beta-propell 97.9 0.003 1E-07 58.5 22.4 190 329-525 39-269 (355)
302 1n7d_A LDL receptor, low-densi 97.9 3E-05 1E-09 80.7 10.4 236 253-497 386-634 (699)
303 2ism_A Putative oxidoreductase 97.9 0.013 4.4E-07 55.4 27.1 195 231-431 30-297 (352)
304 3a9g_A Putative uncharacterize 97.9 0.018 6.3E-07 54.3 27.8 198 230-432 27-297 (354)
305 2vpj_A Kelch-like protein 12; 97.9 0.0015 5.2E-08 60.3 19.7 230 287-524 14-282 (301)
306 2vpj_A Kelch-like protein 12; 97.8 0.002 6.9E-08 59.5 19.4 229 242-479 14-280 (301)
307 2xzh_A Clathrin heavy chain 1; 97.8 0.022 7.7E-07 51.7 33.2 262 252-525 48-337 (365)
308 2xn4_A Kelch-like protein 2; s 97.8 0.0044 1.5E-07 57.2 21.1 228 288-524 16-280 (302)
309 4a0p_A LRP6, LRP-6, low-densit 97.7 0.052 1.8E-06 55.5 36.7 193 232-429 37-235 (628)
310 1n7d_A LDL receptor, low-densi 97.7 0.00019 6.6E-09 74.7 11.7 206 232-439 406-621 (699)
311 2xn4_A Kelch-like protein 2; s 97.7 0.0076 2.6E-07 55.6 21.6 227 243-479 16-278 (302)
312 3ii7_A Kelch-like protein 7; p 97.7 0.0056 1.9E-07 56.6 20.2 225 245-479 14-274 (306)
313 2g8s_A Glucose/sorbosone dehyd 97.6 0.018 6.2E-07 54.4 23.7 232 278-512 19-346 (353)
314 3ii7_A Kelch-like protein 7; p 97.6 0.0069 2.4E-07 56.0 20.6 226 289-524 13-276 (306)
315 3s25_A Hypothetical 7-bladed b 97.6 0.038 1.3E-06 50.7 24.5 243 240-517 22-290 (302)
316 1bpo_A Protein (clathrin); cla 97.5 0.063 2.1E-06 50.9 34.4 262 252-525 47-336 (494)
317 4asc_A Kelch repeat and BTB do 97.5 0.021 7E-07 53.0 21.4 183 245-432 7-222 (315)
318 2g8s_A Glucose/sorbosone dehyd 97.4 0.035 1.2E-06 52.3 22.8 146 231-379 17-215 (353)
319 1zgk_A Kelch-like ECH-associat 97.4 0.01 3.4E-07 54.9 18.5 230 287-525 24-292 (308)
320 4asc_A Kelch repeat and BTB do 97.4 0.035 1.2E-06 51.4 22.1 226 290-524 7-281 (315)
321 1zgk_A Kelch-like ECH-associat 97.3 0.016 5.4E-07 53.6 18.6 228 242-479 24-289 (308)
322 3sre_A PON1, serum paraoxonase 97.3 0.11 3.7E-06 48.6 24.4 174 296-475 81-296 (355)
323 3ei3_A DNA damage-binding prot 97.3 0.3 1E-05 53.7 33.2 214 299-517 808-1059(1158)
324 2uvk_A YJHT; unknown function, 97.3 0.009 3.1E-07 56.6 16.8 232 287-526 19-348 (357)
325 2woz_A Kelch repeat and BTB do 97.3 0.054 1.8E-06 50.2 21.9 227 245-481 18-291 (318)
326 3das_A Putative oxidoreductase 97.2 0.13 4.6E-06 47.8 28.8 230 273-507 28-325 (347)
327 2woz_A Kelch repeat and BTB do 97.2 0.078 2.7E-06 49.1 21.7 226 290-524 18-291 (318)
328 3ott_A Two-component system se 97.1 0.36 1.2E-05 50.8 34.9 265 231-517 21-304 (758)
329 3sre_A PON1, serum paraoxonase 97.1 0.18 6.3E-06 47.1 29.7 200 225-428 43-295 (355)
330 1uuj_A Platelet-activating fac 97.1 0.00032 1.1E-08 49.2 3.1 53 22-75 10-62 (88)
331 2uvk_A YJHT; unknown function, 97.1 0.036 1.2E-06 52.4 18.5 235 242-484 19-349 (357)
332 3pbp_A Nucleoporin NUP82; beta 97.0 0.11 3.9E-06 49.1 20.4 145 240-387 29-208 (452)
333 1cru_A Protein (soluble quinop 96.9 0.38 1.3E-05 46.9 31.7 143 276-418 26-245 (454)
334 1xi4_A Clathrin heavy chain; a 96.8 0.15 5.3E-06 55.8 22.2 261 252-524 47-335 (1630)
335 3pbp_A Nucleoporin NUP82; beta 96.8 0.058 2E-06 51.1 16.4 139 287-427 31-208 (452)
336 2be1_A Serine/threonine-protei 96.8 0.044 1.5E-06 50.8 15.6 193 288-482 10-236 (339)
337 1bpo_A Protein (clathrin); cla 96.8 0.4 1.4E-05 45.6 28.8 231 236-478 70-332 (494)
338 1tl2_A L10, protein (tachylect 96.5 0.052 1.8E-06 46.3 12.8 139 277-423 41-202 (236)
339 1cru_A Protein (soluble quinop 96.5 0.3 1E-05 47.7 20.1 106 231-337 26-162 (454)
340 1tl2_A L10, protein (tachylect 96.4 0.064 2.2E-06 45.8 12.7 100 319-425 41-157 (236)
341 2xzh_A Clathrin heavy chain 1; 96.3 0.64 2.2E-05 42.4 32.1 201 236-445 71-303 (365)
342 1xi4_A Clathrin heavy chain; a 96.2 0.28 9.6E-06 53.9 19.3 222 297-528 47-297 (1630)
343 2zwa_A Leucine carboxyl methyl 96.2 0.42 1.5E-05 49.6 20.6 195 286-481 396-639 (695)
344 3s25_A Hypothetical 7-bladed b 96.2 0.74 2.5E-05 42.0 23.0 178 237-432 58-256 (302)
345 3ott_A Two-component system se 96.2 1.6 5.5E-05 45.8 36.8 273 232-519 146-447 (758)
346 3das_A Putative oxidoreductase 96.2 0.83 2.8E-05 42.5 25.1 156 221-378 21-219 (347)
347 2be1_A Serine/threonine-protei 95.7 0.85 2.9E-05 42.2 17.8 184 244-432 11-232 (339)
348 3b7f_A Glycosyl hydrolase, BNR 95.7 1.6 5.3E-05 41.6 28.1 181 244-428 23-259 (394)
349 2zwa_A Leucine carboxyl methyl 94.4 0.65 2.2E-05 48.2 14.9 152 242-395 451-639 (695)
350 3qhy_B Beta-lactamase inhibito 94.4 1.7 5.8E-05 39.1 15.8 223 278-524 25-250 (282)
351 3b7f_A Glycosyl hydrolase, BNR 92.3 7.7 0.00026 36.7 26.0 263 231-497 54-391 (394)
352 3qhy_B Beta-lactamase inhibito 91.6 7.4 0.00025 34.9 18.2 238 233-500 25-265 (282)
353 3sbq_A Nitrous-oxide reductase 90.3 15 0.00052 36.2 23.0 219 242-465 141-453 (638)
354 4hvt_A Ritya.17583.B, post-pro 88.9 23 0.0008 36.5 25.9 233 284-519 137-429 (711)
355 2d68_A FOP, FGFR1OP; alpha hel 88.6 0.56 1.9E-05 32.6 4.1 29 24-52 20-48 (82)
356 4gq2_M Nucleoporin NUP120; bet 86.6 17 0.00057 39.1 16.3 38 278-315 237-274 (950)
357 3sbq_A Nitrous-oxide reductase 86.4 27 0.00093 34.5 26.8 216 287-508 141-453 (638)
358 2wg3_C Hedgehog-interacting pr 86.0 26 0.0009 33.9 26.2 108 232-339 14-159 (463)
359 3no0_A DNA gyrase subunit A; D 83.6 24 0.00081 31.4 17.9 194 278-477 25-246 (276)
360 4gq2_M Nucleoporin NUP120; bet 82.6 57 0.0019 35.1 20.6 30 455-484 244-273 (950)
361 2wg3_C Hedgehog-interacting pr 81.4 40 0.0014 32.6 27.6 105 277-381 14-159 (463)
362 4hvt_A Ritya.17583.B, post-pro 81.1 54 0.0018 33.8 17.3 189 326-522 137-383 (711)
363 1wp5_A Topoisomerase IV; broke 79.5 37 0.0013 31.0 21.5 187 241-430 3-224 (323)
364 3l6v_A GYRA, DNA gyrase subuni 78.1 44 0.0015 31.1 24.1 190 240-430 4-264 (370)
365 3no0_A DNA gyrase subunit A; D 77.2 39 0.0013 30.0 22.1 201 225-430 14-245 (276)
366 3kci_A Probable E3 ubiquitin-p 76.0 52 0.0018 30.8 30.9 226 243-477 62-345 (389)
367 3kci_A Probable E3 ubiquitin-p 74.4 57 0.002 30.5 30.1 230 279-520 55-345 (389)
368 3q6k_A 43.2 kDa salivary prote 72.5 63 0.0022 30.2 25.2 185 299-508 124-342 (381)
369 3uc1_A DNA gyrase subunit A; D 71.7 60 0.0021 29.6 21.3 199 231-430 41-278 (327)
370 1sqj_A OXG-RCBH, oligoxylogluc 70.5 1.1E+02 0.0037 32.0 21.5 150 231-385 14-195 (789)
371 4fhn_B Nucleoporin NUP120; pro 68.6 15 0.00051 40.5 9.2 38 278-315 239-276 (1139)
372 1suu_A DNA gyrase subunit A; t 62.7 89 0.003 28.2 25.1 188 241-430 6-230 (312)
373 2k9m_A RNA polymerase sigma fa 60.3 5.6 0.00019 30.7 2.8 85 23-122 22-121 (130)
374 1oyi_A Double-stranded RNA-bin 58.1 4.8 0.00016 28.0 1.8 34 19-54 12-45 (82)
375 3zwu_A Alkaline phosphatase PH 56.7 41 0.0014 33.7 9.0 59 278-336 477-548 (592)
376 4a9v_A PHOX; hydrolase, beta-p 52.5 78 0.0027 31.4 9.9 61 277-337 476-549 (592)
377 1suu_A DNA gyrase subunit A; t 51.9 1.4E+02 0.0046 27.0 26.7 231 286-520 6-283 (312)
378 1zi0_A DNA gyrase subunit A; b 51.2 1.4E+02 0.0047 26.9 26.3 188 241-430 1-225 (307)
379 2j4b_A TAF5, transcription ini 51.0 16 0.00054 28.5 4.0 50 88-137 30-79 (138)
380 3mkr_A Coatomer subunit epsilo 49.6 1.4E+02 0.0047 26.4 10.8 58 22-79 64-126 (291)
381 3bqo_A Telomeric repeat-bindin 49.3 30 0.001 28.6 5.3 82 58-139 68-163 (211)
382 3f7f_A Nucleoporin NUP120; nuc 48.9 30 0.001 35.4 6.6 37 278-316 223-259 (729)
383 3uc1_A DNA gyrase subunit A; D 48.7 1.6E+02 0.0054 26.8 26.1 232 244-477 4-279 (327)
384 4fhn_B Nucleoporin NUP120; pro 46.1 45 0.0015 36.7 8.1 30 455-484 246-275 (1139)
385 4h3o_A Lectin; cadmium, plant 45.6 85 0.0029 22.8 9.4 13 405-417 54-66 (105)
386 1am7_A Lysozyme; glycosidase, 45.2 24 0.00082 28.1 4.2 57 68-124 72-128 (158)
387 4gco_A Protein STI-1; structur 44.3 33 0.0011 25.7 5.0 85 31-121 22-109 (126)
388 1wp5_A Topoisomerase IV; broke 44.0 1.8E+02 0.0063 26.3 21.0 197 232-430 39-276 (323)
389 2lni_A Stress-induced-phosphop 43.5 70 0.0024 23.3 6.9 96 19-120 13-111 (133)
390 1kdl_A YOPD protein; yersinia, 43.4 15 0.0005 18.6 1.7 14 23-36 5-18 (26)
391 3bu8_A Telomeric repeat-bindin 43.0 68 0.0023 26.9 6.6 109 82-200 103-211 (235)
392 1zvt_A Topoisomerase IV subuni 42.9 1.7E+02 0.0057 25.5 12.9 143 332-477 4-163 (256)
393 2nxp_A Transcription initiatio 40.9 25 0.00085 28.0 3.8 49 88-137 49-99 (156)
394 4a9v_A PHOX; hydrolase, beta-p 38.9 1.4E+02 0.0047 29.7 9.2 17 320-336 477-493 (592)
395 3zwu_A Alkaline phosphatase PH 38.4 1.1E+02 0.0037 30.7 8.7 61 233-294 477-548 (592)
396 1zvt_A Topoisomerase IV subuni 38.3 2E+02 0.0068 25.0 13.7 145 374-521 4-164 (256)
397 4d9s_A UVB-resistance protein 38.1 2.6E+02 0.0087 26.2 35.6 270 233-520 17-357 (406)
398 3f7f_A Nucleoporin NUP120; nuc 37.5 89 0.003 32.0 7.9 63 456-520 229-305 (729)
399 4b2u_A S67; toxin, ICK; NMR {S 36.5 8.2 0.00028 20.4 0.2 8 4-11 12-19 (36)
400 1elw_A TPR1-domain of HOP; HOP 35.5 1.1E+02 0.0039 21.3 6.9 92 24-121 6-100 (118)
401 3mez_A Mannose-specific lectin 33.1 1.4E+02 0.0049 21.8 6.8 16 459-474 86-101 (111)
402 2xz2_A CSTF-50, isoform B; RNA 32.3 54 0.0018 21.4 3.5 39 15-53 8-47 (66)
403 3sz7_A HSC70 cochaperone (SGT) 32.3 1.1E+02 0.0037 23.7 6.6 92 23-120 12-106 (164)
404 3mez_B Mannose-specific lectin 32.1 1.5E+02 0.0051 21.7 9.9 46 372-417 24-72 (113)
405 1b2p_A Protein (lectin); manno 30.6 1.7E+02 0.0057 21.8 9.0 13 405-417 64-76 (119)
406 3him_A Probable transcriptiona 30.5 58 0.002 26.7 4.8 59 21-79 17-81 (211)
407 3on2_A Probable transcriptiona 30.3 52 0.0018 26.7 4.4 53 21-73 13-71 (199)
408 1ug0_A Splicing factor 4; SURP 30.2 63 0.0022 22.7 4.0 47 4-50 2-55 (88)
409 3q6k_A 43.2 kDa salivary prote 29.8 3.4E+02 0.012 25.2 21.0 163 254-417 124-340 (381)
410 1q1v_A DEK protein; winged-hel 29.4 80 0.0027 21.0 4.2 38 17-54 9-52 (70)
411 2j49_A Transcription initiatio 29.3 71 0.0024 25.1 4.6 31 87-118 31-61 (148)
412 3dzw_A Agglutinin; lectin, man 29.1 1.7E+02 0.0056 21.3 9.4 15 460-474 84-98 (109)
413 3ct5_A Morphogenesis protein 1 28.2 42 0.0014 26.8 3.1 33 22-54 14-51 (159)
414 3ccy_A Putative TETR-family tr 27.9 52 0.0018 27.0 4.0 57 21-77 15-77 (203)
415 3f1b_A TETR-like transcription 26.5 39 0.0013 27.6 2.9 59 21-79 15-79 (203)
416 1v32_A AT5G08430, hypothetical 25.8 42 0.0014 24.4 2.4 23 18-40 33-55 (101)
417 3al9_A Plexin-A2; beta-propell 25.7 3.9E+02 0.013 26.2 10.2 72 231-302 399-476 (539)
418 2jvf_A De novo protein M7; tet 25.4 31 0.001 22.6 1.5 20 21-40 61-80 (96)
419 2dae_A KIAA0733 protein; mitog 25.3 40 0.0014 22.3 2.0 27 28-54 28-56 (75)
420 2cp8_A NEXT to BRCA1 gene 1 pr 25.3 43 0.0015 21.0 2.1 22 19-40 2-23 (54)
421 1sqj_A OXG-RCBH, oligoxylogluc 24.6 6E+02 0.021 26.3 25.8 62 234-297 123-190 (789)
422 2cn3_A Xyloglucanase, beta-1,4 24.0 6E+02 0.02 26.0 25.1 59 278-337 24-91 (737)
423 3jsj_A Putative TETR-family tr 23.9 59 0.002 26.2 3.5 61 20-80 9-74 (190)
424 2dba_A Smooth muscle cell asso 23.9 1.9E+02 0.0064 21.3 6.5 93 22-120 28-126 (148)
425 3ppb_A Putative TETR family tr 23.7 71 0.0024 25.7 4.0 63 17-79 6-74 (195)
426 2qib_A TETR-family transcripti 23.6 56 0.0019 27.6 3.4 59 21-79 14-78 (231)
427 4gof_A Small glutamine-rich te 23.3 44 0.0015 20.8 1.8 15 22-36 2-16 (52)
428 2qfc_A PLCR protein; TPR, HTH, 23.1 2.7E+02 0.0093 24.1 8.2 97 24-120 77-182 (293)
429 3upv_A Heat shock protein STI1 22.7 1.8E+02 0.0061 21.0 5.9 90 25-120 7-99 (126)
430 2q24_A Putative TETR family tr 22.2 35 0.0012 27.9 1.7 53 21-73 16-73 (194)
431 1hxi_A PEX5, peroxisome target 22.2 1.1E+02 0.0036 22.5 4.4 92 23-120 18-112 (121)
432 3qou_A Protein YBBN; thioredox 21.9 2.1E+02 0.0074 24.9 7.1 48 33-80 128-177 (287)
433 2lxb_A Small glutamine-rich te 21.8 63 0.0021 21.8 2.5 17 20-36 5-21 (74)
434 2kck_A TPR repeat; tetratricop 21.8 1.9E+02 0.0066 19.7 5.9 88 28-120 12-104 (112)
435 1na0_A Designed protein CTPR3; 21.6 1.9E+02 0.0065 20.2 5.9 89 26-120 13-104 (125)
436 3l6v_A GYRA, DNA gyrase subuni 21.1 4.9E+02 0.017 24.0 25.7 145 285-430 4-179 (370)
437 2qwt_A Transcriptional regulat 21.1 16 0.00053 30.2 -0.7 52 21-72 14-70 (196)
438 2jt1_A PEFI protein; solution 20.9 35 0.0012 23.3 1.2 32 23-54 7-39 (77)
439 3kz9_A SMCR; transcriptional r 20.4 75 0.0026 25.8 3.5 59 21-79 18-82 (206)
440 3dcf_A Transcriptional regulat 20.3 49 0.0017 27.4 2.4 62 17-78 28-95 (218)
441 3s5r_A Transcriptional regulat 20.3 1.1E+02 0.0038 25.1 4.6 60 21-80 11-76 (216)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.3e-54 Score=424.10 Aligned_cols=288 Identities=19% Similarity=0.342 Sum_probs=263.5
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.++ .....+.+|.+.|.+++|+|++++|++|+.|++|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 3467899999999999999999999999999999999866 4456789999999999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCe
Q 009188 304 DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
|+.+++++..+.+|...|.+++|+|++++|++|+.|++|++||++++........|...+.++.+++++..+++++.|+.
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 99999999999999999999999999999999999999999999888777777777789999999999999999999999
Q ss_pred EEEEECCCce--EEEeecCCceeEEEEcCC--------------------CCEEEEEecCCeEEEEEecCCceeeeEeeC
Q 009188 384 LLLLDREAKV--ERYIEEDQTITSFSLSRD--------------------NKFLLVNLLNQEIHLWNIEGEVKLVAKYKG 441 (540)
Q Consensus 384 i~~~d~~~~~--~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 441 (540)
|++||..+.. .....|...|.+++|+|+ +.++++|+.|+.|++||++++ ..+..+.+
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~ 336 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVG 336 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEEC
T ss_pred EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEEC
Confidence 9999998765 455678899999999996 678999999999999999987 78888889
Q ss_pred CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 442 HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 442 ~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
|...+..+ .++|++.+|++|+.||.|++||+.+++++..+.+|...|++++|+|+++ +|+||+.||+|++|+++
T Consensus 337 h~~~v~~v---~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 337 HDNWVRGV---LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CSSCEEEE---EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred CCCcEEEE---EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence 98875544 3489999999999999999999999999999999999999999999996 89999999999999964
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=356.34 Aligned_cols=293 Identities=18% Similarity=0.309 Sum_probs=263.1
Q ss_pred cceEEecccCcCcEEEEEEecC----CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC
Q 009188 221 SRTLQILQGHTDEVWFLQFSHN----GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV 296 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~----g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 296 (540)
....+.+++|.+.|++++|+|+ +.+|+||+.|++|+||++... .......+.+|...|.+++|++++.++++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 4456778899999999999985 679999999999999999754 33455678999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEE
Q 009188 297 EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQII 376 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 376 (540)
|++|++||+.+++.+..+..+...+.+++|+|++++|++|+.||.|++||++++........+...+.+++|+|++++++
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999988776666666667899999999999999
Q ss_pred EEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeec
Q 009188 377 TMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG 454 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 454 (540)
+++.|+.|++||+.+.. .....|..+|.+++|+|++++|++++.|+.|++||++.. .....+.+|...+..+. +
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~---~ 256 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVA---F 256 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEE---E
T ss_pred EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEE---E
Confidence 99999999999998876 445568889999999999999999999999999999877 67788888888755443 4
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 455 GLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 455 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
+|++.+|++++.||+|++||+.+++++..+.+|.+.|++++|+|++. .|++++.||.|++||+.
T Consensus 257 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEeCC
Confidence 88999999999999999999999999999999999999999999986 99999999999999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-45 Score=353.32 Aligned_cols=292 Identities=16% Similarity=0.300 Sum_probs=259.4
Q ss_pred CCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 219 ~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
.+.+....+.+|.+.|++++|+|++++|++|+.||+|++||+..+ .....+..|...|.+++|+|++++|++|+.|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred ccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 345677899999999999999999999999999999999998765 45567789999999999999999999999999
Q ss_pred cEEEEECCCC----eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 299 AVRRWDVSSG----NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 299 ~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
.|++|++.++ .....+.+|...|.++.|++++ .+++++.|+.|++||+.++........|...|.+++|+|++..
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 9999999875 4567788999999999999887 4899999999999999988888777788889999999999999
Q ss_pred EEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEee
Q 009188 375 IITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSC 452 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 452 (540)
+++++.|+.|++||+++.. ..+..|...|++++|+|+++++++++.||.|++||++.. ..+..+.... ....+..+
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~-~~~~v~~~ 276 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN-IICGITSV 276 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT-CCSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCC-cccceEEE
Confidence 9999999999999998765 455678899999999999999999999999999999877 4455544322 22224445
Q ss_pred eccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 453 FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 453 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.++|++.++++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. +|+|||.||+|++||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCC-EEEEEcCCccEEecC
Confidence 5599999999999999999999999999999999999999999999995 899999999999997
No 4
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.5e-45 Score=346.07 Aligned_cols=294 Identities=28% Similarity=0.523 Sum_probs=265.2
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
......+.+|.+.|++++|+|+|++|++|+.||.|++|+...+ .....+.+|...|.+++|+|++++|++++.|+.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 3556788999999999999999999999999999999998755 4566788999999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
++||+.+++++..+..|...|.+++|+|++++|++|+.||.|++||++++........+...+.+++|+|++..+++++.
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999988777777777789999999999999999999
Q ss_pred CCeEEEEECCCceE--EE-eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCC
Q 009188 381 ESALLLLDREAKVE--RY-IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE 457 (540)
Q Consensus 381 d~~i~~~d~~~~~~--~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 457 (540)
|+.|++||..+... .. ..+...+..++|+|+++++++++.|+.|++||+++. .....+.+|......+...+..++
T Consensus 170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSS
T ss_pred CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCC
Confidence 99999999988652 22 245668999999999999999999999999999887 778888888776555555555678
Q ss_pred CcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEe--CCCcEEEecCC
Q 009188 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIWGLK 519 (540)
Q Consensus 458 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~Dg~i~iw~~~ 519 (540)
+.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++ ++++++ .|++|++|+..
T Consensus 249 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred CcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC-ceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999999999999996 888887 69999999864
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.6e-45 Score=350.34 Aligned_cols=303 Identities=21% Similarity=0.372 Sum_probs=250.1
Q ss_pred cceEEecccCcC-cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 221 SRTLQILQGHTD-EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 221 ~~~~~~l~~h~~-~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
..++..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+..+..........+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999998 9999999999999999999999999999855222222334789999999999999999999999999
Q ss_pred EEEEECCCC--eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc---eEEEeeccccceEEEEEEccCCCE
Q 009188 300 VRRWDVSSG--NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK---ELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 300 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
|++||+.++ +++..+.+|...|.+++|+|++++|++|+.|+.|++||++.. ........|...|.+++|+|++.+
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 999999876 467888899999999999999999999999999999999754 334455667778999999999999
Q ss_pred EEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc--------------eee
Q 009188 375 IITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV--------------KLV 436 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~ 436 (540)
+++++.|+.|++||..... .....|...|.+++|+|++++|++++.|+.|++||..... ..+
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 9999999999999987754 3456788999999999999999999999999999974321 122
Q ss_pred eEeeC-CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc---------eeEeecCCCCCeEEEEeCCCCCCEEEE
Q 009188 437 AKYKG-HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD---------LIGALPGHSGAVNCVSWNPANPHMLAS 506 (540)
Q Consensus 437 ~~~~~-~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~~l~s 506 (540)
..+.+ |...++.+ .+++++..+++++.|+.|++|+...+. ......+|...|++++|+|+++.+|+|
T Consensus 245 ~~~~~~h~~~v~~v---~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 245 CTLSGFHSRTIYDI---AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp EEECSSCSSCEEEE---EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred EEecCCCCCcEEEE---EEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 33333 55554443 347889999999999999999987543 122346899999999999998669999
Q ss_pred EeCCCcEEEecCCCCCcccc
Q 009188 507 ASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 507 ~~~Dg~i~iw~~~~~~~~~~ 526 (540)
||.||+|++|++.+++....
T Consensus 322 ~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 322 CSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EETTSCEEEEEECC------
T ss_pred cCCCCcEEEEEecCCCCccc
Confidence 99999999999998876544
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.7e-45 Score=344.25 Aligned_cols=291 Identities=14% Similarity=0.258 Sum_probs=257.4
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
...+++.+|.+.|++++|+|++++|++|+.||+|++||+.++ .....+..|..+|.+++|+|++++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 456789999999999999999999999999999999999765 56678889999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc-eEEEeeccccceEEEEEEcc-CCCEEEEEe
Q 009188 302 RWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK-ELECWKGQRTLKISDLEVTS-DGKQIITMC 379 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~ 379 (540)
+||+.+++++..+.+|...|.+++|+|++++|++|+.||+|++||++++ ........|...|.+++|+| ++..+++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999765 55666677888999999999 678999999
Q ss_pred cCCeEEEEECCCce---EEEeecCCceeEEEEcC--CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeec
Q 009188 380 KESALLLLDREAKV---ERYIEEDQTITSFSLSR--DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG 454 (540)
Q Consensus 380 ~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 454 (540)
.|++|++||+.... .....+...+..+.|+| ++.++++++.|+.|++||+++. ..+..+.+|...+..+ .+
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~---~~ 236 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFA---VF 236 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEE---EE
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEE---EE
Confidence 99999999997654 22334567889999987 6789999999999999999987 7888999998875443 34
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCC-EEEEEeCCCcEEEecCCC
Q 009188 455 GLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPH-MLASASDDRTIRIWGLKD 520 (540)
Q Consensus 455 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~Dg~i~iw~~~~ 520 (540)
+|++.+|++|+.||+|++||..+++.+..+..|...+.+++|+|++.. ++++|++| .+.+|++.+
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 899999999999999999999999999999999999999999998854 46666655 577787765
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-44 Score=348.45 Aligned_cols=292 Identities=15% Similarity=0.269 Sum_probs=256.4
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
+.+....+.+|.+.|++++|+|++++|+||+.||+|++||.... .....+..|...|.+++|+|++.++++++.|+.
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 34677899999999999999999999999999999999998755 445667789999999999999999999999999
Q ss_pred EEEEECCCC------eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc--C
Q 009188 300 VRRWDVSSG------NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS--D 371 (540)
Q Consensus 300 i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~ 371 (540)
+++|++... .....+..|...|.+++|+|++..|++++.||+|++||++++........|...|.+++++| +
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 999998653 34566778999999999999999999999999999999998887777777778999999987 5
Q ss_pred CCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEE
Q 009188 372 GKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVI 449 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 449 (540)
+..+++++.|+.|++||+++.. ..+..|...|++++|+|+++++++++.|+.|++||++.. ..+..+..+... ..+
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~~-~~~ 287 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKESII-FGA 287 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCC-SCE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCcc-cce
Confidence 7899999999999999998866 445578899999999999999999999999999999876 455555433321 123
Q ss_pred EeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 450 RSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
..+.+++++.++++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++. +|+||+.||+|++|+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~-~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT-AFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCC-EEEEEcCCCCEEecC
Confidence 3444589999999999999999999999999999999999999999999996 999999999999996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.6e-43 Score=334.32 Aligned_cols=292 Identities=19% Similarity=0.308 Sum_probs=252.4
Q ss_pred ceEEecccCcCcEEEEEEecCC-CeEEEEeCCCcEEEEEeecCCc--eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 222 RTLQILQGHTDEVWFLQFSHNG-KYLASSSNDRSAIIWEVDLNGG--VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g-~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
.....+.+|.+.|++++|+|++ ++|++|+.|++|++|++..... ......+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4567899999999999999965 7999999999999999874322 235677899999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC------C
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD------G 372 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~------~ 372 (540)
+|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+++...... ..|...+.++.+.|. +
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL-LGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE-CCCSSCEEEEEECCC------C
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-eccCCcEEEEEEccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999987665544 455668999999985 4
Q ss_pred CEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEE
Q 009188 373 KQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 373 ~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 450 (540)
..+++++.|+.|++||+.+.. ..+..|...|.+++|+|++++|++++.||.|++||+.+. +.+..+..+. . +.
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~-~---v~ 241 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSAQD-E---VF 241 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECCS-C---EE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCC-c---EE
Confidence 589999999999999998866 455678999999999999999999999999999999987 6666776543 3 33
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec--------CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP--------GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
.+.++|++.++++++.+ .+++|++..+..+..+. .|...+.+++|+|+|. +|++|+.||.|++||+.++
T Consensus 242 ~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 242 SLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEeec
Confidence 44458999999988765 59999998887766654 3467899999999996 9999999999999999764
No 9
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-43 Score=338.45 Aligned_cols=295 Identities=17% Similarity=0.284 Sum_probs=248.6
Q ss_pred cceEEecccCcCcEEEEEE-----ec-CCCeEEEEeCCCcEEEEEeecCC----ceEEEEEecCCCCCeEEEEECcCCCe
Q 009188 221 SRTLQILQGHTDEVWFLQF-----SH-NGKYLASSSNDRSAIIWEVDLNG----GVTLKHKLSGHQKPVSCVSWSSDDQQ 290 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~-----sp-~g~~l~tg~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~ 290 (540)
......+.||.+.|++++| +| ++++|++|+.|++|++||+.... .......+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4567789999999999999 77 89999999999999999987432 12456778999999999999999999
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee--ccccceEEEEEE
Q 009188 291 LLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK--GQRTLKISDLEV 368 (540)
Q Consensus 291 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~ 368 (540)
+++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+....... ..+...+.+++|
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999865444333 246668999999
Q ss_pred ccCC----------CEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeee
Q 009188 369 TSDG----------KQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVA 437 (540)
Q Consensus 369 ~~~~----------~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 437 (540)
+|++ .++++++.|+.|++||..... .....|...|.+++|+|++++|++++.||.|++||+........
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 9987 789999999999999966554 45567889999999999999999999999999999955434444
Q ss_pred EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeE--eec-----------CCCCCeEEEEeCCCCCCEE
Q 009188 438 KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIG--ALP-----------GHSGAVNCVSWNPANPHML 504 (540)
Q Consensus 438 ~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~l~~~~~~~~~l 504 (540)
.+.. ... +..+.++|++.+++++ .|+.|++||+.+++... .+. +|...|++++|+|++. +|
T Consensus 251 ~~~~-~~~---v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l 324 (343)
T 2xzm_R 251 EFDA-GST---INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-KL 324 (343)
T ss_dssp EEEC-SSC---EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-CE
T ss_pred eecC-CCc---EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC-eE
Confidence 4432 222 3344448898887655 57889999998876543 443 6888999999999996 89
Q ss_pred EEEeCCCcEEEecCCCC
Q 009188 505 ASASDDRTIRIWGLKDL 521 (540)
Q Consensus 505 ~s~~~Dg~i~iw~~~~~ 521 (540)
++|+.||.|++|++.++
T Consensus 325 ~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEETTSEEEEEEEEEE
T ss_pred EEecCCceEEEEEEEcc
Confidence 99999999999998765
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-44 Score=351.86 Aligned_cols=298 Identities=18% Similarity=0.334 Sum_probs=256.3
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
...+.+.+.+|.+.|++++|+|++++|++|+.||+|+|||+..+ .....+..|...|.+++|+|++++|++|+.|+.
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 35677899999999999999999999999999999999998765 566788899999999999999999999999999
Q ss_pred EEEEECCCCe-------EEEEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCceEEEee-----ccccceEEEE
Q 009188 300 VRRWDVSSGN-------CLHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWK-----GQRTLKISDL 366 (540)
Q Consensus 300 i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i 366 (540)
+++||+.+.. ....+.+|...+.++.|+|+ +..|++|+.|++|++||+.++...... ..|...+.++
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 9999987532 34567789999999999996 457999999999999999887665544 4567789999
Q ss_pred EEcc-CCCEEEEEecCCeEEEEECCCc---eEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCC
Q 009188 367 EVTS-DGKQIITMCKESALLLLDREAK---VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 367 ~~~~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
++++ ++..+++|+.|+.|++||++.. ...+..|...|.+++|+|++++|++++.||.|++||++++ ..+..+..+
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~ 290 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQVYNRE 290 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEEECCC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEEeccc
Confidence 9976 8899999999999999998743 2566779999999999999999999999999999999987 555555543
Q ss_pred cCC----eeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee----cCCCCCeEEEEeCCCCCCEEEEEeCCCcEE
Q 009188 443 KRS----RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL----PGHSGAVNCVSWNPANPHMLASASDDRTIR 514 (540)
Q Consensus 443 ~~~----~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~ 514 (540)
... ...+..+.++|+|.++++|+.||.|++||..+++.+..+ .+|.+.|++++|+|++. +|+|||.||+|+
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~ 369 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLK 369 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEE
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEE
Confidence 221 111233444899999999999999999999999988777 67999999999999996 999999999999
Q ss_pred EecCCCCC
Q 009188 515 IWGLKDLN 522 (540)
Q Consensus 515 iw~~~~~~ 522 (540)
+|++...+
T Consensus 370 iW~~~~~~ 377 (380)
T 3iz6_a 370 IWAFSGHR 377 (380)
T ss_dssp EEECCSSS
T ss_pred EEecCCCc
Confidence 99998764
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=340.75 Aligned_cols=289 Identities=15% Similarity=0.184 Sum_probs=236.2
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecC--------CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN--------GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
.|...|.+++|+|||++|++++ |+++++||.... ...........|..+|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4777899999999999999888 778888874310 0000011122356789999999985 68899999999
Q ss_pred EEEECCCCeEEEE----eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCC-EE
Q 009188 301 RRWDVSSGNCLHV----YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGK-QI 375 (540)
Q Consensus 301 ~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l 375 (540)
+|||+.+++.... ..+|...|++++|+|++++|++|+.||+|++||++++........|...|.+++|++++. .+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999999875443 347999999999999999999999999999999999988888888888999999999985 78
Q ss_pred EEEecCCeEEEEECCCce-EEE---eecCCceeEEEEcCC-CCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEE
Q 009188 376 ITMCKESALLLLDREAKV-ERY---IEEDQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~-~~~---~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 450 (540)
++++.|++|++||+++.. ... ..+...+.+++|+|+ ++++++|+.||.|++||+++. +.+..+.+|...+..+.
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~ 264 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLV 264 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEE
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEE
Confidence 899999999999998865 222 235567899999995 578889999999999999987 78888999998765544
Q ss_pred eeeccCCC-cEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 451 SCFGGLEQ-AFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 451 ~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
++|++ ++|++|+.||+|++||+.+++++ .+.+|.+.|++++|+|++..+|+|+|.||+|++|++.+..+.
T Consensus 265 ---fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 265 ---FSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp ---ECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred ---EccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 37776 68999999999999999988765 567899999999999999878999999999999999886554
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-43 Score=341.31 Aligned_cols=290 Identities=16% Similarity=0.200 Sum_probs=233.5
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeC------CCcEEEEEeecCCce-EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSN------DRSAIIWEVDLNGGV-TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~------dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
..+|.+.|++++|||||++||+|+. |+.|++|+...+... .......+|...|.+++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 3579999999999999999999998 677888876543211 11223457889999999999975 556788999
Q ss_pred EEEEECCCCeEEE----EeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCC-E
Q 009188 300 VRRWDVSSGNCLH----VYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGK-Q 374 (540)
Q Consensus 300 i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~ 374 (540)
|++||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||++++........|...|.+++|++++. .
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 9999999887543 3347889999999999999999999999999999999888888888888999999999885 7
Q ss_pred EEEEecCCeEEEEECCCceE----EEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEE
Q 009188 375 IITMCKESALLLLDREAKVE----RYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVI 449 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~~----~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 449 (540)
+++++.|+.|++||+++... ....+...+.+++|+|++ .++++|+.|+.|++||+++. .....+.+|...+..+
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGL 275 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEE
Confidence 88999999999999987652 223456789999999975 68889999999999999887 6778888888876554
Q ss_pred EeeeccCCC-cEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 450 RSCFGGLEQ-AFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 450 ~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
.+ +|++ ++|++|+.||+|+|||+.+++++..+ +|.+.|++++|+|.+..+|+|+|.||+|++|++.+..
T Consensus 276 ~~---sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 276 AY---SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EE---CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EE---cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 43 6665 68999999999999999999888765 6999999999999433599999999999999997643
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-42 Score=358.33 Aligned_cols=308 Identities=17% Similarity=0.281 Sum_probs=255.5
Q ss_pred ccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec---
Q 009188 197 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS--- 273 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--- 273 (540)
+++.+.|+.+.+|+. .+.+....+.+|.+.|++++|+|+|++||+|+.|++|++||+..+ .....+.
T Consensus 163 l~s~s~D~~v~lwd~-------~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g---~~~~~~~~~~ 232 (611)
T 1nr0_A 163 IISGSDDNTVAIFEG-------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG---TKTGVFEDDS 232 (611)
T ss_dssp EEEEETTSCEEEEET-------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEECBCTT
T ss_pred EEEEeCCCeEEEEEC-------CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC---cEeeeecccc
Confidence 456667777888853 235677889999999999999999999999999999999998765 3444553
Q ss_pred ----CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEe-----------------------------------
Q 009188 274 ----GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY----------------------------------- 314 (540)
Q Consensus 274 ----~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------- 314 (540)
+|.+.|.+++|+|++++|++++.|++|++||+.+++++..+
T Consensus 233 ~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~ 312 (611)
T 1nr0_A 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312 (611)
T ss_dssp SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence 79999999999999999999999999999999988765433
Q ss_pred --------ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec-----------------------------
Q 009188 315 --------EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG----------------------------- 357 (540)
Q Consensus 315 --------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------- 357 (540)
.+|...|.+++|+|++++|++++.|+.|++||+.++.......
T Consensus 313 ~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 313 LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 4678899999999999999999999999999987543322110
Q ss_pred -----------------------------------------------------cccceEEEEEEccCCCEEEEEecCCeE
Q 009188 358 -----------------------------------------------------QRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 358 -----------------------------------------------------~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
.+...+.+++|+|+|+++++++.|++|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 011346789999999999999999999
Q ss_pred EEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeE--eeCCcCCeeEEEeeeccCCCc
Q 009188 385 LLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAK--YKGHKRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 385 ~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~ 459 (540)
++||+.+.. .....|...|++++|+|+|++|++++.|+.|++||+.+....... +..|...+.. +.++|+++
T Consensus 473 ~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~---v~fspdg~ 549 (611)
T 1nr0_A 473 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC---VSWSPDNV 549 (611)
T ss_dssp EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE---EEECTTSS
T ss_pred EEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeE---EEECCCCC
Confidence 999997754 233678899999999999999999999999999999873344443 3347766444 44499999
Q ss_pred EEEEeeCCCcEEEEECCCCc-ee-EeecCC-CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 460 FIASGSEDSQVYIWHRASCD-LI-GALPGH-SGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~~~~-~~-~~~~~h-~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
+|++|+.|++|++||+.++. .. ..+.+| .+.|++++|+|++ . |+|++.||+|++|++.
T Consensus 550 ~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~-~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-T-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT-E-EEEEETTSCEEEEECC
T ss_pred EEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC-E-EEEecCCCCEEEEecc
Confidence 99999999999999998865 33 677889 8999999999988 3 9999999999999984
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5e-42 Score=337.20 Aligned_cols=284 Identities=24% Similarity=0.428 Sum_probs=242.6
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC------------------CCeEEEEECcCCCe
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ------------------KPVSCVSWSSDDQQ 290 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~l~~s~~~~~ 290 (540)
+|.+.|++++|+|+|++||+|+ ++.+++|++..+. ....+..|. ..|.+++|+|++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS---LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC---EEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC---EEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 6999999999999999999987 6899999987653 333444332 24999999999999
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc
Q 009188 291 LLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 291 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 370 (540)
|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++........+ ..+.+++++|
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~ 216 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSP 216 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECS
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC-CCcEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999887765554433 4799999999
Q ss_pred -CCCEEEEEecCCeEEEEECCCceE--EE-------eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc-------
Q 009188 371 -DGKQIITMCKESALLLLDREAKVE--RY-------IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV------- 433 (540)
Q Consensus 371 -~~~~l~~~~~d~~i~~~d~~~~~~--~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~------- 433 (540)
++.++++++.|+.|++||..+... .. ..|...|.+++|+|+++++++++.|+.|++||++...
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 899999999999999999987652 12 3578899999999999999999999999999997531
Q ss_pred ----eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCC------CCCCE
Q 009188 434 ----KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNP------ANPHM 503 (540)
Q Consensus 434 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~------~~~~~ 503 (540)
.....+.+|...+..+ .+++++.+|++|+.||.|++||..+++++..+.+|.+.|.+++|++ ++ .+
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~---~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~-~~ 372 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSV---ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY-NV 372 (393)
T ss_dssp ----CEEEEEECCSSCEEEE---EECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC-EE
T ss_pred CCCCcceEEEecccCcEEEE---EECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC-CE
Confidence 2345667777764443 3488999999999999999999999999999999999999999886 45 48
Q ss_pred EEEEeCCCcEEEecCCCC
Q 009188 504 LASASDDRTIRIWGLKDL 521 (540)
Q Consensus 504 l~s~~~Dg~i~iw~~~~~ 521 (540)
|+|||.||+|++|++.+.
T Consensus 373 l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 373 FATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEETTSEEEEEEEEEC
T ss_pred EEEECCCCcEEECccccc
Confidence 999999999999998654
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=325.76 Aligned_cols=293 Identities=18% Similarity=0.317 Sum_probs=234.1
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEe-cC-CCCCeEEEEECcCCCeEEEeeCCC
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKL-SG-HQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
.+.++.+.+|.++|++++|+|+ +||+|+.|++|++||+..+. ......+ .+ |.+.|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4567889999999999999987 99999999999999997542 2344445 44 999999999999999999999999
Q ss_pred cEEEEECCC-------CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC----ceEEEeeccccceEEEEE
Q 009188 299 AVRRWDVSS-------GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG----KELECWKGQRTLKISDLE 367 (540)
Q Consensus 299 ~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~ 367 (540)
+|++||+.. .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++. .+.......|...|.+++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999999853 456778889999999999999999999999999999999942 244455667778999999
Q ss_pred EccCCCEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcCC--CCEEEEEecCCeEEEEEecCCc-------e
Q 009188 368 VTSDGKQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSRD--NKFLLVNLLNQEIHLWNIEGEV-------K 434 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~-------~ 434 (540)
|+|++..|++++.|++|++||..+.. .....|...|.+++|+|+ +.++++++.|+.|++||++... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 99999999999999999999986542 445578999999999998 6789999999999999986531 2
Q ss_pred eeeEeeC-CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc--eeE-eecCCCC-CeEEEEeCC--CCCCEEEEE
Q 009188 435 LVAKYKG-HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD--LIG-ALPGHSG-AVNCVSWNP--ANPHMLASA 507 (540)
Q Consensus 435 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~-~~~~h~~-~v~~l~~~~--~~~~~l~s~ 507 (540)
....+.. |...+..+.+ +++ .+|++++.||.|++||..+++ ... .+.+|.. .|++++|+| ++ .+|+||
T Consensus 241 ~~~~~~~~h~~~v~~v~~---s~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~-~~las~ 315 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAW---GFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK-TILATG 315 (330)
T ss_dssp EEEECCSCCSSCEEEEEE---CTT-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC------CCEEEE
T ss_pred EeeecccccccceEEEEE---cCC-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc-eEEEEe
Confidence 2333443 6666555443 544 489999999999999998774 333 3467887 899999999 45 489999
Q ss_pred eCCCcEEEecCCCC
Q 009188 508 SDDRTIRIWGLKDL 521 (540)
Q Consensus 508 ~~Dg~i~iw~~~~~ 521 (540)
|.||+|++|++++.
T Consensus 316 s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 316 GDDGIVNFWSLEKA 329 (330)
T ss_dssp ETTSEEEEEEC---
T ss_pred cCCCcEEEEEeccC
Confidence 99999999998753
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.4e-42 Score=354.57 Aligned_cols=292 Identities=21% Similarity=0.329 Sum_probs=247.0
Q ss_pred eEEecccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
....+.+|.+.|++++|+|++. .|++|+.|++|++||.... +....+.+|.+.|.+++|+|++++|++++.|++|+
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC---eEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 4556889999999999999987 5999999999999997543 66778999999999999999999999999999999
Q ss_pred EEECCCCeEEEEee-------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE--------------------
Q 009188 302 RWDVSSGNCLHVYE-------KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC-------------------- 354 (540)
Q Consensus 302 iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------- 354 (540)
+||+.++++...+. +|...|.+++|+|++++|++++.|++|++||+.++....
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 99999999998884 799999999999999999999999999999997654322
Q ss_pred -----------------------eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEE---------------
Q 009188 355 -----------------------WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY--------------- 396 (540)
Q Consensus 355 -----------------------~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--------------- 396 (540)
....|...|.+++|+|+|+++++++.|++|++||..+.....
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 375 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence 223466789999999999999999999999999986532100
Q ss_pred ---------------------------------------------------------------------eecCCceeEEE
Q 009188 397 ---------------------------------------------------------------------IEEDQTITSFS 407 (540)
Q Consensus 397 ---------------------------------------------------------------------~~~~~~i~~~~ 407 (540)
..+...+.+++
T Consensus 376 s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va 455 (611)
T 1nr0_A 376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA 455 (611)
T ss_dssp CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEE
T ss_pred CCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEE
Confidence 01123467899
Q ss_pred EcCCCCEEEEEecCCeEEEEEecCCce-eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-CceeEe--
Q 009188 408 LSRDNKFLLVNLLNQEIHLWNIEGEVK-LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-CDLIGA-- 483 (540)
Q Consensus 408 ~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~-- 483 (540)
|+|+|+++++|+.|+.|++||+.+... .... .+|...+.. +.++|+|++|++++.|++|++||+.+ ++.+..
T Consensus 456 ~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~---v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~ 531 (611)
T 1nr0_A 456 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS---VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS 531 (611)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE---EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred EeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE---EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence 999999999999999999999987522 2233 566666444 34499999999999999999999988 665544
Q ss_pred ecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 484 LPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 484 ~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
+.+|...|++++|+|++. +|+|++.|++|++|++.++.
T Consensus 532 ~~~H~~~V~~v~fspdg~-~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 532 WTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTT
T ss_pred eeecccceeEEEECCCCC-EEEEEECCCcEEEEECCCcc
Confidence 345999999999999996 99999999999999999875
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-40 Score=321.02 Aligned_cols=294 Identities=18% Similarity=0.284 Sum_probs=251.0
Q ss_pred ceEEecccCcCcEEEEEEecC-CCeEEEEeCCCcEEEEEeecCCc--eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 222 RTLQILQGHTDEVWFLQFSHN-GKYLASSSNDRSAIIWEVDLNGG--VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~-g~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
....+|+||.+.|++++|+|+ +++|||||.||+|+|||+..... ......+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 345689999999999999997 68999999999999999975432 345677899999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE-EEeeccccceEEEEEEccCC--CEE
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL-ECWKGQRTLKISDLEVTSDG--KQI 375 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~--~~l 375 (540)
.|++|+...+........+...+..+.+++++..|++++.|+.+++||+..... ......+...+..++|++++ ..+
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 999999999999999888999999999999999999999999999999976544 33445667789999998765 578
Q ss_pred EEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeee
Q 009188 376 ITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (540)
++++.|+.|++||..+.. .....|...|++++|+|++++|++++.|+.|++||+++. ..+..+..+.. +..+.
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~----v~~~~ 263 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLDGGDI----INALC 263 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECSSC----EEEEE
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeeeecCCce----EEeee
Confidence 899999999999999876 455678899999999999999999999999999999987 66666665542 33444
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCCCceeEeec---------CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRASCDLIGALP---------GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
++|++.++ +++.|+.|++||+.++..+..+. +|...|++++|+|++. +|+||+.||.|+|||+++|+
T Consensus 264 ~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 264 FSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEC--
T ss_pred cCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeCCCcC
Confidence 47776654 56679999999999887766553 6889999999999996 99999999999999999885
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.7e-41 Score=346.47 Aligned_cols=299 Identities=25% Similarity=0.484 Sum_probs=262.8
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
+..+.++.+.+|+ ...+.+..+.+|.+.|++++|+|++++|++++.||.|++||.... ....+.+|..
T Consensus 278 ~~~~~d~~i~~w~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~~~~~~ 345 (577)
T 2ymu_A 278 ASASDDKTVKLWN--------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTLTGHSS 345 (577)
T ss_dssp EEEETTSCEEEEE--------TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----EEEEECCCSS
T ss_pred EEEeCCCEEEEEe--------CCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEEeCCCC
Confidence 3444555566664 235677889999999999999999999999999999999997632 3456789999
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG 357 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 357 (540)
.|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||....... ...
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~-~~~ 423 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLT 423 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEE-EEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE-Eec
Confidence 9999999999999999999999999995 77888999999999999999999999999999999999997655444 444
Q ss_pred cccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceee
Q 009188 358 QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLV 436 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 436 (540)
.+...|.+++|+|+++.+++++.|+.|++||..... .....|...|.+++|+|++++|++++.|+.|++||... +.+
T Consensus 424 ~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~ 501 (577)
T 2ymu_A 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLL 501 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--CEE
T ss_pred CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEE
Confidence 566799999999999999999999999999987766 55667899999999999999999999999999999643 677
Q ss_pred eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
..+.+|...+..+. ++|++++|++++.||.|++||. +++++..+.+|.+.|++++|+|++. +|+|+|.||+|++|
T Consensus 502 ~~~~~h~~~v~~l~---~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~-~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 502 QTLTGHSSSVRGVA---FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASSDKTVKLW 576 (577)
T ss_dssp EEEECCSSCEEEEE---ECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEE
T ss_pred EEEeCCCCCEEEEE---EcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEe
Confidence 88899988755543 4899999999999999999995 6889999999999999999999996 89999999999999
Q ss_pred c
Q 009188 517 G 517 (540)
Q Consensus 517 ~ 517 (540)
|
T Consensus 577 d 577 (577)
T 2ymu_A 577 N 577 (577)
T ss_dssp C
T ss_pred C
Confidence 7
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.6e-41 Score=319.05 Aligned_cols=259 Identities=15% Similarity=0.288 Sum_probs=230.7
Q ss_pred EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEec
Q 009188 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
...++.+|.+.|.+++|+|++++|++++.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcC-CCCEEEEEecCCe
Q 009188 348 GGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSR-DNKFLLVNLLNQE 423 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~ 423 (540)
.+++.......|...|.+++|+|++.++++++.|++|++||+.+.. .....|...|.+++|+| ++..+++|+.|+.
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 9888777777788899999999999999999999999999998752 44567899999999999 6789999999999
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCE
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHM 503 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 503 (540)
|++||++..........++...+..+.+.. .+++.++++|+.||+|++||+.+++++..+.+|...|.+++|+|+++ +
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~ 242 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYP-LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-I 242 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEECC-STTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-E
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEEE-cCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC-E
Confidence 999999876444444445555555554433 45888999999999999999999999999999999999999999996 9
Q ss_pred EEEEeCCCcEEEecCCCCCcccccc
Q 009188 504 LASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 504 l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
|+|++.||+|++||+.++++.+...
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEcCCCeEEEEECCCCceeeecc
Confidence 9999999999999999998877643
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.2e-40 Score=339.15 Aligned_cols=320 Identities=25% Similarity=0.474 Sum_probs=272.0
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
+..+.++.+.+|+ ...+.+..+.+|...|++++|+|++++|++++.|+.|++|+... .....+.+|..
T Consensus 237 ~~~~~d~~i~~w~--------~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~~~h~~ 304 (577)
T 2ymu_A 237 ASASDDKTVKLWN--------RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTLTGHSS 304 (577)
T ss_dssp EEEETTSCEEEEC--------TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----CEEEEECCCSS
T ss_pred EEEeCCCEEEEEe--------CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEEecCCC
Confidence 3444555666664 23567888999999999999999999999999999999999642 35567889999
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG 357 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 357 (540)
.|.+++|+|+++.|++++.|+.|++||.. +..+..+..|...+.+++|+|+++++++++.||.|++||..+..... ..
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~-~~ 382 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LT 382 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEE-EE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEE-ec
Confidence 99999999999999999999999999975 55567788999999999999999999999999999999976554444 44
Q ss_pred cccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceee
Q 009188 358 QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLV 436 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 436 (540)
.+...|.+++|+|+++++++++.|+.|++||..... .....|...|++++|+|+++++++++.|+.|++||... +.+
T Consensus 383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~ 460 (577)
T 2ymu_A 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLL 460 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEE
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEE
Confidence 566789999999999999999999999999987665 55667899999999999999999999999999999754 567
Q ss_pred eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEe
Q 009188 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 516 (540)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw 516 (540)
..+.+|...+..+ .++|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++. +|++++.||.|++|
T Consensus 461 ~~~~~~~~~v~~~---~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 461 QTLTGHSSSVRGV---AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLW 535 (577)
T ss_dssp EEEECCSSCEEEE---EECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEE
T ss_pred EEEcCCCCCEEEE---EEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEE
Confidence 7888888875443 44899999999999999999994 7889999999999999999999996 89999999999999
Q ss_pred cCCCCCcccc-ccCCCce---EeccCC
Q 009188 517 GLKDLNVKRK-DCHSNGV---HYCNGG 539 (540)
Q Consensus 517 ~~~~~~~~~~-~~~~~~v---~~c~~g 539 (540)
|. ++++... ..|...| .|.++|
T Consensus 536 d~-~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 536 NR-NGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp CT-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred eC-CCCEEEEEcCCCCCEEEEEEcCCC
Confidence 96 4555544 4455554 455444
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-40 Score=319.27 Aligned_cols=292 Identities=18% Similarity=0.289 Sum_probs=254.4
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
....+.+|.+.|++++|+|+|++|++|+.||.|++||+..+ .....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 44568999999999999999999999999999999998765 566778899999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-----CcEEEEecCCceE-----------EEeeccccc--eEE
Q 009188 303 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND-----KSICMWELGGKEL-----------ECWKGQRTL--KIS 364 (540)
Q Consensus 303 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~v~ 364 (540)
||+.+++.+..+. +...+.+++|+|+++++++++.+ |.|.+||+..... ......+.. .+.
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 9999999999887 88899999999999999999999 9999999954321 111112222 899
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCC-ce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeC
Q 009188 365 DLEVTSDGKQIITMCKESALLLLDREA-KV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKG 441 (540)
Q Consensus 365 ~i~~~~~~~~l~~~~~d~~i~~~d~~~-~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 441 (540)
+++|+|+++.+++++.+|.|++||+.+ .. .....+...|.+++|+|++++|++++.|+.|++||+++. .....+.
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~- 257 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-QVLKKYE- 257 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE-
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-ceeeeec-
Confidence 999999999999999999999999987 33 455568899999999999999999999999999999887 5666665
Q ss_pred CcCCeeEEEeeeccCCCcEEEEeeCCC--------------cEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 442 HKRSRFVIRSCFGGLEQAFIASGSEDS--------------QVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 442 ~~~~~~~i~~~~~~~~~~~l~s~s~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
+... +..+.++|++.++++++.++ .+++||..+++.+..+.+|.+.|++++|+|++. +|+++
T Consensus 258 ~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 333 (369)
T 3zwl_B 258 TDCP---LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT-SYASG 333 (369)
T ss_dssp CSSC---EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred CCCC---ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC-EEEEE
Confidence 3333 33344589999999999988 899999999999999999999999999999996 99999
Q ss_pred eCCCcEEEecCCCCCcc
Q 009188 508 SDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 508 ~~Dg~i~iw~~~~~~~~ 524 (540)
+.||.|++|+++++...
T Consensus 334 ~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 334 GEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp ETTSEEEEEEECHHHHT
T ss_pred cCCCeEEEEECccccch
Confidence 99999999999876543
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.1e-39 Score=309.68 Aligned_cols=286 Identities=14% Similarity=0.195 Sum_probs=250.5
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec--CCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS--GHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
....+|.+.|++++|+|++++|++++ ||.|++|++..+........+. +|...|.+++|+|++++|++++.|+.|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34457999999999999999999999 9999999998654333333333 79999999999999999999999999999
Q ss_pred EECCCCe--EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec
Q 009188 303 WDVSSGN--CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 303 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
||+.+++ ....+..|...+.+++|+|+++++++++.||.|++||++++........+...+.+++|+|+++.+++++.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9999887 66778889999999999999999999999999999999988877777777789999999999999999999
Q ss_pred CCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc
Q 009188 381 ESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 381 d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 459 (540)
|+.|++||.++.. .....+...+.+++|+|+++++++++.++.|++||+++.. ...+..|...+..+ .++++++
T Consensus 204 dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~---~~~~~~~ 278 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSL---KFAYCGK 278 (337)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEE---EECTTSS
T ss_pred CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEE---EECCCCC
Confidence 9999999998876 5556778899999999999999999999999999998763 34566676664443 3488999
Q ss_pred EEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 460 FIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
++++++.||.|++||+.+++.+.... |...|.+++|+|++. +|++++.||.|++|++
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDK-YIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSC-EEEEEETTSCEEEEEE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCCC-EEEEecCCCeEEEEEE
Confidence 99999999999999999999886554 889999999999996 9999999999999996
No 23
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=307.81 Aligned_cols=294 Identities=17% Similarity=0.226 Sum_probs=254.6
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
.+....+.+|.+.|++++| |++++|++|+.||.|++||+... .....+..|...|.+++|+|++++|++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 4678899999999999999 99999999999999999999755 5667778899999999999999999999999999
Q ss_pred EEEECCCC---eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc-CCCEEE
Q 009188 301 RRWDVSSG---NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS-DGKQII 376 (540)
Q Consensus 301 ~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~ 376 (540)
++|++... +....+..|...|.+++| +++.+++++.||.|++|| ..........+...+.++.+.| ++..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 99998764 667788899999999999 577999999999999999 4445555556677999999988 999999
Q ss_pred EEecCCeEEEEECCCceEEEee-cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeecc
Q 009188 377 TMCKESALLLLDREAKVERYIE-EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 455 (540)
+++.|+.+++||.......... +...+.+++|+|++. +++++.+|.|++||+++. ..+..+.+|...+..+. ++
T Consensus 160 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~---~~ 234 (313)
T 3odt_A 160 TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIK---LL 234 (313)
T ss_dssp EEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEE---EC
T ss_pred EEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEE---Ee
Confidence 9999999999996665555555 889999999999998 999999999999999887 77888888888755544 37
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCC
Q 009188 456 LEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHS 530 (540)
Q Consensus 456 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~ 530 (540)
|++ .+++++.||.|++||+.+++.+..+..|...|++++|+|++. +++++.||.|++|++++++........
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC--EEEEETTSCEEEEESCGGGCCC-----
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC--EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence 787 588999999999999999999999999999999999999985 667999999999999998877654433
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-39 Score=343.47 Aligned_cols=291 Identities=18% Similarity=0.297 Sum_probs=246.5
Q ss_pred eEEecccCcCcEEEEEEecCC-CeEEEEeCCCcEEEEEeecCCc--eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 223 TLQILQGHTDEVWFLQFSHNG-KYLASSSNDRSAIIWEVDLNGG--VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g-~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
....+.+|.+.|++++|+|++ ++|+||+.||+|++|++..... ......+.+|...|.+++|+|++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 446789999999999999865 7999999999999999875432 2345678899999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee---ccccceEEEEEEccCC--CE
Q 009188 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK---GQRTLKISDLEVTSDG--KQ 374 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~--~~ 374 (540)
|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||..+....... ..|...|.+++|+|++ ..
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999999999999999999999999999999999999999999998765544433 3466689999999987 68
Q ss_pred EEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEee
Q 009188 375 IITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSC 452 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 452 (540)
+++++.|++|++||+++.. .....|...|++++|+|+++++++++.||.|++||+++. ..+..+..+. . +..+
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~~~~-~---v~~~ 608 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLEANS-V---IHAL 608 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCBCSS-C---EEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCCC-c---EEEE
Confidence 9999999999999998865 455678999999999999999999999999999999887 5555554432 2 3344
Q ss_pred eccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC-------------------CCeEEEEeCCCCCCEEEEEeCCCcE
Q 009188 453 FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS-------------------GAVNCVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 453 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-------------------~~v~~l~~~~~~~~~l~s~~~Dg~i 513 (540)
.++|++.++++++ ++.|++||+.+++.+..+..+. ..+++++|+|++. +|+||+.||+|
T Consensus 609 ~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i 686 (694)
T 3dm0_A 609 CFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVI 686 (694)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS-EEEEEETTSEE
T ss_pred EEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeE
Confidence 4588988887766 5569999999998887765322 1378999999996 99999999999
Q ss_pred EEecCCC
Q 009188 514 RIWGLKD 520 (540)
Q Consensus 514 ~iw~~~~ 520 (540)
++|++..
T Consensus 687 ~iW~i~~ 693 (694)
T 3dm0_A 687 RVWGIGR 693 (694)
T ss_dssp EEEEC--
T ss_pred EEEeccC
Confidence 9999863
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-40 Score=326.09 Aligned_cols=294 Identities=12% Similarity=0.097 Sum_probs=250.9
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC---ceEEEEEecCCCCCeEEEEECcC----C---CeE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG---GVTLKHKLSGHQKPVSCVSWSSD----D---QQL 291 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~---~~~~~~~~~~h~~~v~~l~~s~~----~---~~l 291 (540)
.....+.+|.+.|++++|+| ++|++|+.||.|++|++.... .......+.+|..+|.+++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45678899999999999998 799999999999999998653 01235567799999999999999 9 999
Q ss_pred EEeeCCCcEEEEECCCCeE-----EEEeecC-----CCcEEEEEEe----cCCCE-EEEEeCCCcEEEEecCC------c
Q 009188 292 LTCGVEEAVRRWDVSSGNC-----LHVYEKA-----GLGLVSCGWH----PDRKW-IFSGANDKSICMWELGG------K 350 (540)
Q Consensus 292 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~ 350 (540)
++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||+.. .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999998887 8888888 5899999999 99999 99999999999999976 3
Q ss_pred eEEE-----ee-------ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEee---c---CCceeEEEEcC
Q 009188 351 ELEC-----WK-------GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIE---E---DQTITSFSLSR 410 (540)
Q Consensus 351 ~~~~-----~~-------~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~---~---~~~i~~~~~s~ 410 (540)
.... .. ..+...+.+++|+|++ .+++++.|+.|++||+++.. ..... | ...+.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 3322 22 3456689999999999 99999999999999998766 33444 6 88999999999
Q ss_pred CCCEEEEEecC---CeEEEEEecCCceeeeEeeC-------------CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 411 DNKFLLVNLLN---QEIHLWNIEGEVKLVAKYKG-------------HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 411 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
++++|++++.| +.|++||+++. ..+..+.. |...+..+ .++|++.+|++++.||.|++||
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSL---SFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEE---EECSSSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEE---EECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999 99999999887 67777777 76664443 4488999999999999999999
Q ss_pred CCCCceeEeec------CC---------------CCCeEEEEeCCCCC---------CEEEEEeCCCcEEEecCCCCC
Q 009188 475 RASCDLIGALP------GH---------------SGAVNCVSWNPANP---------HMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 475 ~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~~---------~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
+.+++.+..+. +| ...|++++|+|++. .+|++++.||.|++|++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999999999 88 99999999999972 399999999999999998864
No 26
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=316.60 Aligned_cols=298 Identities=12% Similarity=0.207 Sum_probs=242.2
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeE-EEEeC---CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC---CCeEE
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYL-ASSSN---DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD---DQQLL 292 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l-~tg~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~ 292 (540)
|......+.+|.+.|++++|+|++..+ ++|+. ||.|++||+..+.. ......+|..+|.+++|+|+ +.+|+
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL--KLLREIEKAKPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE--EEEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc--cceeeecccCcEEEEEEcCCCCCCceEE
Confidence 344556778999999999999999755 45655 89999999986532 22223478999999999998 69999
Q ss_pred EeeCCCcEEEEECCCCe-EEEEeecCCCcEEEEEE------ecCCCEEEEEeCCCcEEEEecCCce-EEEeeccc----c
Q 009188 293 TCGVEEAVRRWDVSSGN-CLHVYEKAGLGLVSCGW------HPDRKWIFSGANDKSICMWELGGKE-LECWKGQR----T 360 (540)
Q Consensus 293 s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~----~ 360 (540)
+++.||.|++||+.+++ .+..+..|...|.++.| +|++++|++++.||.|++||+++.. .......+ .
T Consensus 85 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp EEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred EecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 99999999999999988 88899999999999965 6789999999999999999997654 33333222 3
Q ss_pred ceEEEEE----EccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcC---CCCEEEEEecCCeEEEEEecCC
Q 009188 361 LKISDLE----VTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSR---DNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 361 ~~v~~i~----~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
..+.+++ |++++..+++++.++.|++||+++.. .....+...+.+++|+| +++++++++.||.|++||+++.
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 3788888 78999999999999999999999877 45567889999999999 9999999999999999999865
Q ss_pred ceeeeEe-----eCCcCCeeEEEeeeccCCCc-EEEEeeCCCcEEEEECCCC-------------------ceeEeecCC
Q 009188 433 VKLVAKY-----KGHKRSRFVIRSCFGGLEQA-FIASGSEDSQVYIWHRASC-------------------DLIGALPGH 487 (540)
Q Consensus 433 ~~~~~~~-----~~~~~~~~~i~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~-------------------~~~~~~~~h 487 (540)
.....+ .+|...+..+. ++|++. ++++|+.||.|++||+.++ +.+..+.+|
T Consensus 245 -~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 245 -HPTKGFASVSEKAHKSTVWQVR---HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp -ETTTEEEEEEEECCSSCEEEEE---EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred -CcccceeeeccCCCcCCEEEEE---ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 333333 37777655443 378888 8999999999999998754 456778899
Q ss_pred CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCc
Q 009188 488 SGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 488 ~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
.+.|++++|+|++..++++++.||.|++|++.+.+.
T Consensus 321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999999999974444899999999999998754
No 27
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.1e-39 Score=317.82 Aligned_cols=292 Identities=15% Similarity=0.192 Sum_probs=239.6
Q ss_pred cceEEecccCcCcEEEEEEecCC-CeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc-CCCeEEEeeCCC
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNG-KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEE 298 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg 298 (540)
.+....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+..... .......+|...|.+++|+| ++.+|++++.|+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 45667889999999999999999 9999999999999999986533 23333357999999999999 789999999999
Q ss_pred cEEEEECCCCeEEEEeecC---CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCC-E
Q 009188 299 AVRRWDVSSGNCLHVYEKA---GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGK-Q 374 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~ 374 (540)
.|++||+.+ .....+..+ ...|.+++|+|++++|++|+.||.|++||+++.....+ ..+...|.+++|+|++. .
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEE-ECSSSCEEEEEECSSCTTE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEe-ccCCCcEEEEEECCCCCCE
Confidence 999999985 555555544 37899999999999999999999999999965554444 45667999999999999 9
Q ss_pred EEEEecCCeEEEEECCC----ce-EEEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC----
Q 009188 375 IITMCKESALLLLDREA----KV-ERYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR---- 444 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~----~~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---- 444 (540)
+++++.|+.|++||+.+ .. .....+...|.+++|+| ++++|++++.|+.|++||+++. .....+.+|..
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccccccccccccccc
Confidence 99999999999999986 33 45557899999999999 9999999999999999999876 33344433321
Q ss_pred ---Cee-------EEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC--CCCCeEEEEeCCCCCCEEEEEeCCCc
Q 009188 445 ---SRF-------VIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG--HSGAVNCVSWNPANPHMLASASDDRT 512 (540)
Q Consensus 445 ---~~~-------~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~Dg~ 512 (540)
... .+..+.+++++++ +|+.||.|++||+.+++.+..+.+ |.+.+..++|+|++. +|++++ ||.
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~ 374 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFN 374 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTE
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc-EEEEec-CCc
Confidence 110 1112333667766 888999999999999999999987 567788889999996 899997 999
Q ss_pred EEEecCCC
Q 009188 513 IRIWGLKD 520 (540)
Q Consensus 513 i~iw~~~~ 520 (540)
|++||+++
T Consensus 375 i~iw~~~~ 382 (383)
T 3ei3_B 375 ILIWNRED 382 (383)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999975
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-39 Score=318.43 Aligned_cols=292 Identities=14% Similarity=0.186 Sum_probs=246.5
Q ss_pred ecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 226 ~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
.+..|.++|++++|+|++++|++|+.||.|++||+..+ .......+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 34569999999999999999999999999999999854 23367788899999999999999999999999999999999
Q ss_pred CCCeEEEEe--ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce----EEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 306 SSGNCLHVY--EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE----LECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 306 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
.+++....+ ..|...|.+++|+|++++|++++.||.|++||++... .......+...|.+++|+|++..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 998765444 5688899999999999999999999999999997654 3444456677999999999999999999
Q ss_pred cCCeEEEEECC------------------Cce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe
Q 009188 380 KESALLLLDRE------------------AKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 380 ~d~~i~~~d~~------------------~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 439 (540)
.|+.+++||+. ... .....+...+.+++|+|+++++++++.|+.|++||+++. ..+..+
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~ 240 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATL 240 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceeEEE
Confidence 99999999964 222 444478889999999999999999999999999999887 677888
Q ss_pred eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC--Cce--------------------------------e----
Q 009188 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS--CDL--------------------------------I---- 481 (540)
Q Consensus 440 ~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--------------------------------~---- 481 (540)
..|...+..+. +++++.++++| .||.|++|++.+ ++. .
T Consensus 241 ~~~~~~v~~~~---~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 241 ASETLPLLAVT---FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp ECSSCCEEEEE---EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred ccCCCCeEEEE---EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 88877654443 37888988887 899999999987 421 0
Q ss_pred --Eee-cCCCCCeEEEEeCCCCC---CEEEEEeCCCcEEEecCCCCCc
Q 009188 482 --GAL-PGHSGAVNCVSWNPANP---HMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 482 --~~~-~~h~~~v~~l~~~~~~~---~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
..+ .+|.+.|++++|++.+. .+|+|++.||.|++|++.+++.
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 223 48999999999775442 4999999999999999987543
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.9e-39 Score=314.42 Aligned_cols=290 Identities=16% Similarity=0.297 Sum_probs=243.8
Q ss_pred EecccCcCcEEEEEEecC----CCeEEEEeCCCcEEEEEeecCCceEEEEEec--CCCCCeEEEEECcC----CCeEEEe
Q 009188 225 QILQGHTDEVWFLQFSHN----GKYLASSSNDRSAIIWEVDLNGGVTLKHKLS--GHQKPVSCVSWSSD----DQQLLTC 294 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~----g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s~ 294 (540)
....+|.++|++++|+|+ ...+++++.++.|++||+..+.......... .|...|.+++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 455699999999999984 4566666667799999998665444443333 37789999999998 6799999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEee---ccccceEEEEEEcc
Q 009188 295 GVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWK---GQRTLKISDLEVTS 370 (540)
Q Consensus 295 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~ 370 (540)
+.||.|++||+.+++.+..+..|...|.+++|+| ++++|++|+.||.|++||++++...... ..+...|.+++|+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999999999999999999999999999 9999999999999999999987777665 56778999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCceE------------------------------EEeecCCceeEEEEcCCCCEEEEEec
Q 009188 371 DGKQIITMCKESALLLLDREAKVE------------------------------RYIEEDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~~~~------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
++..+++++.|+.|++||..+... ....+...|.+++|+ ++++++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 999999999999999999987531 111278899999998 789999999
Q ss_pred CCeEEEEEecCCc-------------eeeeEeeCCcCCeeEEEeeeccCC--CcEEEEeeCCCcEEEEECCCCce----e
Q 009188 421 NQEIHLWNIEGEV-------------KLVAKYKGHKRSRFVIRSCFGGLE--QAFIASGSEDSQVYIWHRASCDL----I 481 (540)
Q Consensus 421 dg~i~i~d~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~----~ 481 (540)
|+.|++||+.... ..+..+..|...+..+. ++++ +.+|++|+.||.|++||+.++++ .
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 326 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR---FSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC 326 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC---CEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE---EcCCCCCcEEEEEecCCcEEEEECCCCCCccccc
Confidence 9999999997653 23566666766644433 3667 99999999999999999998864 3
Q ss_pred EeecCC--CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 482 GALPGH--SGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 482 ~~~~~h--~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
..+.+| ...|++++|+|++. +|++++.||.|++||+.+
T Consensus 327 ~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 327 TTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred eEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence 477777 79999999999996 999999999999999864
No 30
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-39 Score=317.27 Aligned_cols=253 Identities=18% Similarity=0.351 Sum_probs=232.1
Q ss_pred EecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc
Q 009188 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK 350 (540)
Q Consensus 271 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 350 (540)
.+.+|.++|++++|+|++.+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||+|++||+.+.
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 351 ELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 351 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
........|...|.+++|+|++..+++++.|++|++||+.+.. ..+..|...+.++.++|++.++++++.|+.|++||
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 8877777888899999999999999999999999999998865 55667889999999999999999999999999999
Q ss_pred ecCCceeeeEeeCCcCCeeEEEeeeccCC--------------------CcEEEEeeCCCcEEEEECCCCceeEeecCCC
Q 009188 429 IEGEVKLVAKYKGHKRSRFVIRSCFGGLE--------------------QAFIASGSEDSQVYIWHRASCDLIGALPGHS 488 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 488 (540)
+.+. .....+.+|...+..+.+ +|+ +.++++|+.||.|++||+.++.++..+.+|.
T Consensus 263 ~~~~-~~~~~~~~h~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~ 338 (410)
T 1vyh_C 263 VATK-ECKAELREHRHVVECISW---APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 338 (410)
T ss_dssp TTTC-CEEEEECCCSSCEEEEEE---CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred CCCC-ceeeEecCCCceEEEEEE---cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence 9887 677788888887666554 443 6799999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 489 GAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 489 ~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
+.|++++|+|++. +|++++.||+|++||+.++++.....
T Consensus 339 ~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 339 NWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp SCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEc
Confidence 9999999999996 89999999999999999988776643
No 31
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-39 Score=325.34 Aligned_cols=295 Identities=15% Similarity=0.193 Sum_probs=229.2
Q ss_pred EEecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc-CCCeEEEeeCCCcEE
Q 009188 224 LQILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVR 301 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~ 301 (540)
.....+|...|+|++|+| ++++||+|+.||.|+|||+..+.. .....+.+|.+.|++|+|+| ++.+|++|+.||+|+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 345677999999999999 567999999999999999876543 34455678999999999998 689999999999999
Q ss_pred EEECCCCeEEEEeecC--CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCC-EEEEE
Q 009188 302 RWDVSSGNCLHVYEKA--GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGK-QIITM 378 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~ 378 (540)
+||++++........+ ...+.+++|+|++.+|++|+.||.|++||+++..+.. ...|...|.+++|+|++. .++++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN-LRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCC-SBCCSSCEEEEEECTTCSSEEEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEE-EecccceEEeeeecCCCceEEEEe
Confidence 9999876554443333 3457889999999999999999999999998765544 345667899999999986 67789
Q ss_pred ecCCeEEEEECCCce-----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC----CeeEE
Q 009188 379 CKESALLLLDREAKV-----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR----SRFVI 449 (540)
Q Consensus 379 ~~d~~i~~~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~i 449 (540)
+.|+.|++||+++.. .....|...|++++|+|++++|++++.||.|++||+.+. .....+..|.. ....+
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~ 348 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPI 348 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCC
T ss_pred cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeE
Confidence 999999999998754 223468889999999999999999999999999999876 33333333321 11122
Q ss_pred EeeeccCCCcEEEEee------------CCCcEEEEECCCCceeEeec-CCCCCeEEE-EeCCCCCCEEEEEeCCCcEEE
Q 009188 450 RSCFGGLEQAFIASGS------------EDSQVYIWHRASCDLIGALP-GHSGAVNCV-SWNPANPHMLASASDDRTIRI 515 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l-~~~~~~~~~l~s~~~Dg~i~i 515 (540)
...+ ++++.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|++. +|++|+ |+.|+|
T Consensus 349 ~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~-~lasg~-d~~i~i 425 (435)
T 4e54_B 349 KAAW-HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TLASAM-GYHILI 425 (435)
T ss_dssp BCEE-CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS-CEEEEC-SSEEEE
T ss_pred EEEE-cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC-EEEEEc-CCcEEE
Confidence 2222 44444444443 34679999999999988765 688889887 6999996 788765 789999
Q ss_pred ecCCCCCcc
Q 009188 516 WGLKDLNVK 524 (540)
Q Consensus 516 w~~~~~~~~ 524 (540)
|++++++..
T Consensus 426 W~~~~gk~r 434 (435)
T 4e54_B 426 WSQQEARTR 434 (435)
T ss_dssp CCCC-----
T ss_pred EECCcCeee
Confidence 999998764
No 32
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=302.62 Aligned_cols=269 Identities=17% Similarity=0.235 Sum_probs=240.7
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH 275 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h 275 (540)
.+++++.|+.+.+|+-... .......+.+|...|.+++|+|++.++++|+.|++|++||+..+ .....+..|
T Consensus 50 ~l~tgs~D~~v~vW~~~~~-----~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~---~~~~~~~~~ 121 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDE-----RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG---KQIKSIDAG 121 (321)
T ss_dssp EEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECC
T ss_pred EEEEEcCCCCEEEEECCCC-----CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC---CEEEEEeCC
Confidence 5678888999999964311 12345578999999999999999999999999999999999766 566778889
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW 355 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 355 (540)
...+.+++|+|++++|++++.||.|++|++.+++....+..+...+.+++|+|++++|++|+.||.|++||+++++....
T Consensus 122 ~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV 433 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 433 (540)
...+...|.+++|+|++++|++++.|+.|++||.++.. .....|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~- 280 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR- 280 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-
Confidence 77788899999999999999999999999999998765 455678899999999999999999999999999999987
Q ss_pred eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 434 KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
..+..+.+|...+..+. +++++.+|++++.||.|++||..
T Consensus 281 ~~~~~~~~h~~~v~~v~---~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 281 TCVHTFFDHQDQVWGVK---YNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECCCSSCEEEEE---ECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEEcCCCCcEEEEE---ECCCCCEEEEEeCCCeEEEEeCC
Confidence 78888888888755544 38899999999999999999963
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=314.12 Aligned_cols=279 Identities=19% Similarity=0.276 Sum_probs=248.1
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
|.+.|++++|+|++++|++|+.||.|++||.. + .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 78899999999999999999999999999932 2 4566788999999999999999999999999999999999999
Q ss_pred EEEEeecCCCc---------------EEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 310 CLHVYEKAGLG---------------LVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 310 ~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
.+..+..+... +.+++|++++ .+++++.+|.|++||+++.........+...+.+++|+|+++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL 261 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence 99998877766 8999999985 6889999999999999887776666677789999999999999
Q ss_pred EEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEee
Q 009188 375 IITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSC 452 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 452 (540)
+++++.|+.|++||..+.. .....+...+.+++|+|++ ++++++.|+.|++||+++. ..+..+..|...+..+
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~--- 336 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAG--- 336 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEE---
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEE---
Confidence 9999999999999998765 5555688999999999999 9999999999999999887 7778888877765443
Q ss_pred eccCCCcEEEEeeCCCcEEEEECCCCc--------------------eeEeecCCCC--CeEEEEeCCCCCCEEEEEeCC
Q 009188 453 FGGLEQAFIASGSEDSQVYIWHRASCD--------------------LIGALPGHSG--AVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 453 ~~~~~~~~l~s~s~dg~i~iwd~~~~~--------------------~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~D 510 (540)
.++|++++|++++.||.|++||+.+++ ++..+.+|.. .|++++|+|++. +|++++.|
T Consensus 337 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 415 (425)
T 1r5m_A 337 RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-KISVAYSL 415 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-EEEEEESS
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-eEEEEecC
Confidence 348899999999999999999999888 8899999976 999999999996 99999999
Q ss_pred CcEEEecCC
Q 009188 511 RTIRIWGLK 519 (540)
Q Consensus 511 g~i~iw~~~ 519 (540)
|.|++|+++
T Consensus 416 g~i~iw~~~ 424 (425)
T 1r5m_A 416 QEGSVVAIP 424 (425)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEeec
Confidence 999999986
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=313.99 Aligned_cols=287 Identities=18% Similarity=0.247 Sum_probs=245.7
Q ss_pred ccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEe----ecCCc---eEEEEEecC----------CCCCeEEEEECcCCC
Q 009188 228 QGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEV----DLNGG---VTLKHKLSG----------HQKPVSCVSWSSDDQ 289 (540)
Q Consensus 228 ~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~----~~~~~---~~~~~~~~~----------h~~~v~~l~~s~~~~ 289 (540)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ ..+.. ......+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34669999999999999 9999999999999999 65431 002223333 678999999999999
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccce-------
Q 009188 290 QLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLK------- 362 (540)
Q Consensus 290 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------- 362 (540)
+|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.++........+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 688889999999999999999999999999999999999999887776666555544
Q ss_pred --------EEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 363 --------ISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 363 --------v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
+.+++|++++ .+++++.++.|++||..+.. .....+...|.+++|+|+++++++++.|+.|++||++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 8889999875 58899999999999998865 555678899999999999999999999999999999876
Q ss_pred ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCc
Q 009188 433 VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRT 512 (540)
Q Consensus 433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~ 512 (540)
.....+..|...+..+. +++++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++. +|++++.||.
T Consensus 280 -~~~~~~~~~~~~i~~~~---~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~ 353 (425)
T 1r5m_A 280 -NSQNCFYGHSQSIVSAS---WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQ 353 (425)
T ss_dssp -SCSEEECCCSSCEEEEE---EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSC
T ss_pred -ccceEecCCCccEEEEE---ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCC-EEEEEECCCe
Confidence 66777777777654443 37788 999999999999999999999999999999999999999996 9999999999
Q ss_pred EEEecCCCCC
Q 009188 513 IRIWGLKDLN 522 (540)
Q Consensus 513 i~iw~~~~~~ 522 (540)
|++||+.+++
T Consensus 354 i~i~~~~~~~ 363 (425)
T 1r5m_A 354 VNVYDLKKLN 363 (425)
T ss_dssp EEEEECHHHH
T ss_pred EEEEECCCCc
Confidence 9999999877
No 35
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-37 Score=334.95 Aligned_cols=297 Identities=14% Similarity=0.233 Sum_probs=263.8
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
...+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+..+ .....+.+|.++|.+++|+|++++|++++.||.|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 456788999999999999999999999999999999998765 56677889999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc-eEEEeeccccceEEEEEEcc-CCCEEEEEe
Q 009188 302 RWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK-ELECWKGQRTLKISDLEVTS-DGKQIITMC 379 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~ 379 (540)
+||+.+++.+..+..|...|++++|+|++++|++++.||.|++||+.++ ........+...+.+++|+| ++..+++++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999765 66666667778999999999 889999999
Q ss_pred cCCeEEEEECCCce--EEEe-ecCCceeEEEEcC--CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeec
Q 009188 380 KESALLLLDREAKV--ERYI-EEDQTITSFSLSR--DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFG 454 (540)
Q Consensus 380 ~d~~i~~~d~~~~~--~~~~-~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 454 (540)
.||.|++||..+.. .... .+...+.+++|+| ++.++++++.+|.|++||+.+. .....+.+|...+..+ .+
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~---~~ 236 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFA---VF 236 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEE---EE
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEE---EE
Confidence 99999999987654 3333 3448899999999 9999999999999999999887 7788888887765443 34
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 455 GLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 455 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
+|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++..++++++.|+.+.+|++.......
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTL 307 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCcee
Confidence 89999999999999999999999999999999999999999999986555666667789999987765443
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-39 Score=320.15 Aligned_cols=311 Identities=16% Similarity=0.224 Sum_probs=257.6
Q ss_pred CCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC-ceEEEEEecCCCCCe
Q 009188 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG-GVTLKHKLSGHQKPV 279 (540)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v 279 (540)
+.++.+.+|+....... +++..+ .|.+.|++++|+|++++|++|+.||.|++|++.... .......+.+|...|
T Consensus 42 ~~d~~v~iw~~~~~~~~----~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v 116 (416)
T 2pm9_A 42 STDSSLELWSLLAADSE----KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116 (416)
T ss_dssp CCCCCCEEEESSSGGGC----SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCC
T ss_pred CCCCeEEEEEccCCCCC----cEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccce
Confidence 66778888865432111 122233 589999999999999999999999999999997521 123667788999999
Q ss_pred EEEEECcC-CCeEEEeeCCCcEEEEECCCCe------EEE---EeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecC
Q 009188 280 SCVSWSSD-DQQLLTCGVEEAVRRWDVSSGN------CLH---VYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELG 348 (540)
Q Consensus 280 ~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 348 (540)
.+++|+|+ +.+|++++.|+.|++||+.+++ ... ....|...|.+++|+|+ +..|++++.||.|++||++
T Consensus 117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 99999998 8999999999999999999886 332 23578889999999998 7899999999999999998
Q ss_pred CceEEEeeccc------cceEEEEEEccCC-CEEEEEecCC---eEEEEECCCce---EEEe-ecCCceeEEEEcC-CCC
Q 009188 349 GKELECWKGQR------TLKISDLEVTSDG-KQIITMCKES---ALLLLDREAKV---ERYI-EEDQTITSFSLSR-DNK 413 (540)
Q Consensus 349 ~~~~~~~~~~~------~~~v~~i~~~~~~-~~l~~~~~d~---~i~~~d~~~~~---~~~~-~~~~~i~~~~~s~-~~~ 413 (540)
++........+ ...+.+++|+|++ ..+++++.++ .|++||+++.. .... .|...|.+++|+| +++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 276 (416)
T 2pm9_A 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH 276 (416)
T ss_dssp TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS
T ss_pred CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC
Confidence 87776655554 6789999999997 6899999998 99999998742 3444 6889999999999 999
Q ss_pred EEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCC-cEEEEeeCCCcEEEEECCCCceeEeec-------
Q 009188 414 FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQ-AFIASGSEDSQVYIWHRASCDLIGALP------- 485 (540)
Q Consensus 414 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~------- 485 (540)
++++++.|+.|++||+++. ..+..+..|...+..+. ++|++ .++++++.||.|++||+.++.......
T Consensus 277 ~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~---~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 352 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTK---FAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ 352 (416)
T ss_dssp CEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEE---ECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------
T ss_pred eEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEE---ECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccccc
Confidence 9999999999999999887 77888888887755544 37888 899999999999999998766433221
Q ss_pred ----------------------------CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 486 ----------------------------GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 486 ----------------------------~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
.|..++++++|+|+|. +|++++.||.|+||++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 353 ESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCCCCC
T ss_pred CCcccccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEeccC
Confidence 1677888999999995 9999999999999999874
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=321.06 Aligned_cols=291 Identities=14% Similarity=0.233 Sum_probs=247.8
Q ss_pred CcCcEEEEEEecCCC-eEEEE----------eCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 230 HTDEVWFLQFSHNGK-YLASS----------SNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 230 h~~~V~~~~~sp~g~-~l~tg----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
+...|.+++|+|+|+ +|++| +.|+.|+|||+..+........ ..|...|.+++|+|++.+|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCC
Confidence 445788999999987 99999 8899999999976532212222 35889999999999999999999999
Q ss_pred cEEEEECCC----CeEEEEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCce------EEE---eeccccceEE
Q 009188 299 AVRRWDVSS----GNCLHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKE------LEC---WKGQRTLKIS 364 (540)
Q Consensus 299 ~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~ 364 (540)
.|++||+.+ .+.+..+..|...|.+++|+|+ +++|++++.||.|++||+.+.. ... ....+...+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999988 4588889999999999999998 8999999999999999997765 221 1245667899
Q ss_pred EEEEccC-CCEEEEEecCCeEEEEECCCce--EEEeec------CCceeEEEEcCCC-CEEEEEecCC---eEEEEEecC
Q 009188 365 DLEVTSD-GKQIITMCKESALLLLDREAKV--ERYIEE------DQTITSFSLSRDN-KFLLVNLLNQ---EIHLWNIEG 431 (540)
Q Consensus 365 ~i~~~~~-~~~l~~~~~d~~i~~~d~~~~~--~~~~~~------~~~i~~~~~s~~~-~~l~~~~~dg---~i~i~d~~~ 431 (540)
+++|+|+ +..+++++.|+.|++||+.+.. .....+ ...+.+++|+|++ .++++++.++ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 7899999999999999998876 222233 6889999999997 6899999998 999999998
Q ss_pred CceeeeEee-CCcCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 432 EVKLVAKYK-GHKRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 432 ~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
...+...+. +|...+..+. ++| ++.+|++++.||.|++||+.+++++..+.+|...|++++|+|+++.+|++++.
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~---~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLD---WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEE---ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred CCCCcEEeecCccCceeEEE---eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence 656677777 7877654443 367 89999999999999999999999999999999999999999998559999999
Q ss_pred CCcEEEecCCCCCcc
Q 009188 510 DRTIRIWGLKDLNVK 524 (540)
Q Consensus 510 Dg~i~iw~~~~~~~~ 524 (540)
||.|++|++.++...
T Consensus 327 d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 327 DNKIEVQTLQNLTNT 341 (416)
T ss_dssp SSEEEEEESCCCCCS
T ss_pred CCcEEEEEccCCCCC
Confidence 999999999987654
No 38
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=317.19 Aligned_cols=296 Identities=10% Similarity=0.129 Sum_probs=237.9
Q ss_pred CCcceEEec-ccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeec---CCceEEEEEecCCCCCeEEEEECcCCCeEEE
Q 009188 219 IPSRTLQIL-QGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDL---NGGVTLKHKLSGHQKPVSCVSWSSDDQQLLT 293 (540)
Q Consensus 219 ~~~~~~~~l-~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 293 (540)
...+.+..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.. +........+ +|...|.+++|+|++.+|++
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 345677777 99999999999999 999999999999999999875 3212222223 59999999999999999999
Q ss_pred eeCCCcEEEEECC---CCeEEEEeec------------CCCcEEEEE--EecCCCEEEEEeCCCcEEEEecCCceEEEee
Q 009188 294 CGVEEAVRRWDVS---SGNCLHVYEK------------AGLGLVSCG--WHPDRKWIFSGANDKSICMWELGGKELECWK 356 (540)
Q Consensus 294 ~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 356 (540)
++.||.|++||+. +++....+.. +...+.++. +++++.+|++|+.||.|++||++++......
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 9999999999995 5555444332 445666666 5578999999999999999999887766555
Q ss_pred cc--ccceEEEEEEccCCCEEEEEecCCeEEEEECCCceE-EE--eecCCceeEEEEc----CCCCEEEEEecCCeEEEE
Q 009188 357 GQ--RTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE-RY--IEEDQTITSFSLS----RDNKFLLVNLLNQEIHLW 427 (540)
Q Consensus 357 ~~--~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~--~~~~~~i~~~~~s----~~~~~l~~~~~dg~i~i~ 427 (540)
.. +...|.+++|+|++.++++++.||.|++||+++... .. ..+...|.+++|+ |++.++++++.||.|++|
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 54 677999999999999999999999999999998762 22 2667789999665 467899999999999999
Q ss_pred EecCCceeeeEeeCCcCCee-----------------------EEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee
Q 009188 428 NIEGEVKLVAKYKGHKRSRF-----------------------VIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~-----------------------~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 484 (540)
|+++. .....+.++..... .+..+.++ ++.+|++|+.||.|++||+.+++....+
T Consensus 289 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 289 NFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp ETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 99877 66666665532111 01122224 6689999999999999999999887777
Q ss_pred cC-------------------------------------CCCCeEEEEeCCC-CCCEEEEEeCCCcEEEec
Q 009188 485 PG-------------------------------------HSGAVNCVSWNPA-NPHMLASASDDRTIRIWG 517 (540)
Q Consensus 485 ~~-------------------------------------h~~~v~~l~~~~~-~~~~l~s~~~Dg~i~iw~ 517 (540)
.+ |.+.|++++|+++ +..+|+||+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 65 8899999999998 234999999999999995
No 39
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-39 Score=316.18 Aligned_cols=288 Identities=14% Similarity=0.201 Sum_probs=228.2
Q ss_pred ecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 226 ~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
.+..|.++|++++|+|+|++|++|+.||.|++||+..+ .......+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 44557789999999999999999999999999999853 22456678899999999999999999999999999999999
Q ss_pred CCCe---EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce----EEEeeccccceEEEEEEccCCCEEEEE
Q 009188 306 SSGN---CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE----LECWKGQRTLKISDLEVTSDGKQIITM 378 (540)
Q Consensus 306 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~ 378 (540)
.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+++.. ...+...+...|.+++|+|++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 9887 677788899999999999999999999999999999998765 334444377899999999999999999
Q ss_pred ecCCeEEEEECCC------------------c-eEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce---ee
Q 009188 379 CKESALLLLDREA------------------K-VERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK---LV 436 (540)
Q Consensus 379 ~~d~~i~~~d~~~------------------~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~ 436 (540)
+.|+.|++||+.. . ......|...|.+++|+|++++|++++.||.|++||+.+... .+
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 9999999999852 1 122227888999999999999999999999999999988733 26
Q ss_pred eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc-------------------------------------
Q 009188 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD------------------------------------- 479 (540)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------------------------------- 479 (540)
..+.+|...+..+. ++|++++|++|+.++.+ +|+.....
T Consensus 245 ~~~~~~~~~v~~~~---~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 245 ITVKLSQLPLRSLL---WANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp CCEECSSSCEEEEE---EEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred EeecCCCCceEEEE---EcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 67788887755443 37899999999877666 66554111
Q ss_pred --eeE-------------eecCCCCCeEEEEeCCCCCC---EEEEEeCCCcEEEecC
Q 009188 480 --LIG-------------ALPGHSGAVNCVSWNPANPH---MLASASDDRTIRIWGL 518 (540)
Q Consensus 480 --~~~-------------~~~~h~~~v~~l~~~~~~~~---~l~s~~~Dg~i~iw~~ 518 (540)
... ....|.+.|+++++.+.+.. .|+|+|.||.|++||+
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 01139999999998765543 6999999999999986
No 40
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=306.52 Aligned_cols=303 Identities=15% Similarity=0.195 Sum_probs=245.4
Q ss_pred cceEEecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCceEEEEEe----------cCCCCCeEEEEECc-CC
Q 009188 221 SRTLQILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVTLKHKL----------SGHQKPVSCVSWSS-DD 288 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~----------~~h~~~v~~l~~s~-~~ 288 (540)
.+....+.+|.+.|++++|+| ++++|++|+.||.|++||+............ .+|...|.+++|+| ++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 345677889999999999999 9999999999999999999865432221111 25999999999999 77
Q ss_pred CeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC---CCEEEEEeCCCcEEEEecCCceEEEeeccccceEEE
Q 009188 289 QQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD---RKWIFSGANDKSICMWELGGKELECWKGQRTLKISD 365 (540)
Q Consensus 289 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 365 (540)
.+|++++.||.|++||+.+++....+. +...+.++.|++. +.++++++.||.|++||++++........+...|.+
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 899999999999999999999888885 6678999999984 449999999999999999887777777777789999
Q ss_pred EEEccCCC-EEEEEecCCeEEEEECCCce---EEE---------------eecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009188 366 LEVTSDGK-QIITMCKESALLLLDREAKV---ERY---------------IEEDQTITSFSLSRDNKFLLVNLLNQEIHL 426 (540)
Q Consensus 366 i~~~~~~~-~l~~~~~d~~i~~~d~~~~~---~~~---------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 426 (540)
++|+|++. .+++++.||.|++||++... ... ..+...|.+++|+|+++++++++.||.|++
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 271 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence 99999998 58899999999999997643 211 357789999999999999999999999999
Q ss_pred EEecCCceeeeEeeCCc--CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEE
Q 009188 427 WNIEGEVKLVAKYKGHK--RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHML 504 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 504 (540)
||+.+... ...+..+. ..............+..+++++.|+.|++||+.+++++..+.+|.+.|++++|+|++. +|
T Consensus 272 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 349 (408)
T 4a11_B 272 WNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-EL 349 (408)
T ss_dssp EETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-EE
T ss_pred EECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-EE
Confidence 99987632 22222111 1111111222234456677788899999999999999999999999999999999996 99
Q ss_pred EEEeCCCcEEEecCCCCCcccc
Q 009188 505 ASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 505 ~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
++++.||.|++|++.+++....
T Consensus 350 ~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEEETTSCEEEEEECC------
T ss_pred EEECCCCeEEEEeCCCCCccCC
Confidence 9999999999999999877653
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-37 Score=298.05 Aligned_cols=267 Identities=19% Similarity=0.306 Sum_probs=234.1
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC-ceEEEEEecC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG-GVTLKHKLSG 274 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~ 274 (540)
.+++.+.|+.+.+|+.. ....+..+..|...|.+++|+|+|++|++|+.|+.|++|++.... .......+.+
T Consensus 69 ~l~s~s~Dg~v~iWd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 69 LLLSASQDGKLIIWDSY-------TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp EEEEEETTTEEEEEETT-------TCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC
T ss_pred EEEEEeCCCcEEEEECC-------CCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC
Confidence 35677788888888643 345677888999999999999999999999999999999987542 2345677889
Q ss_pred CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC 354 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 354 (540)
|.+.|.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||++++....
T Consensus 142 h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~ 220 (340)
T 1got_B 142 HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE
Confidence 999999999998775 8899999999999999999999999999999999999999999999999999999999888777
Q ss_pred eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeec---CCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 355 WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEE---DQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
....|...|.+++|+|+++.+++++.|++|++||++... .....+ ...|.+++|+|+++++++|+.|+.|++||+.
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 777788899999999999999999999999999998866 333333 2479999999999999999999999999998
Q ss_pred CCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
+. .....+.+|...+..+. ++|++.+|++|+.||.|++||
T Consensus 301 ~~-~~~~~~~~h~~~v~~~~---~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 301 KA-DRAGVLAGHDNRVSCLG---VTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TC-CEEEEEECCSSCEEEEE---ECTTSSCEEEEETTSCEEEEC
T ss_pred cC-cEeeEeecCCCcEEEEE---EcCCCCEEEEEcCCccEEecC
Confidence 77 67788899988755544 489999999999999999997
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.4e-36 Score=305.79 Aligned_cols=288 Identities=18% Similarity=0.345 Sum_probs=248.5
Q ss_pred ceEEecccCcCcE-EEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcE
Q 009188 222 RTLQILQGHTDEV-WFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV 300 (540)
Q Consensus 222 ~~~~~l~~h~~~V-~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 300 (540)
.....+.+|.+.| .++.+ ++++|++|+.||+|++||+..+ +....+.+|.+.|.+++|+|++ ++++|+.||+|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence 3556888999885 55555 5789999999999999998765 6778889999999999999988 99999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEe--cCCCEEEEEeCCCcEEEEecCCceE-----------------------EEe
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWH--PDRKWIFSGANDKSICMWELGGKEL-----------------------ECW 355 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~ 355 (540)
++||+.+++++..+.+|...|.+++|+ +++.++++|+.||.|++||+++... ...
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 999999999999999999999999999 4778999999999999999976442 223
Q ss_pred eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV 433 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 433 (540)
...+...+.++ ++++..+++++.|+.|++||+.+.. .....|...|.+++|+|+++++++++.||.|++||++++
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~- 342 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG- 342 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Confidence 44455566665 6789999999999999999998876 445568899999999999999999999999999999887
Q ss_pred eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcE
Q 009188 434 KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 434 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i 513 (540)
..+..+.+|...+..+.+ ++.++++|+.||.|++||+.++....... |...+..++|+|++. ++++++ ||.|
T Consensus 343 ~~~~~~~~h~~~v~~~~~-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~-dg~i 414 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRL-----SDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDN-ILVSGS-ENQF 414 (464)
T ss_dssp EEEEEECCCSSCEEEEEE-----CSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSS-EEEEEE-TTEE
T ss_pred cEEEEEeCCCCcEEEEEE-----cCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCC-EEEEec-CCeE
Confidence 788889999887655543 36899999999999999999988776665 677888899999985 888888 8999
Q ss_pred EEecCCCCCcccc
Q 009188 514 RIWGLKDLNVKRK 526 (540)
Q Consensus 514 ~iw~~~~~~~~~~ 526 (540)
++||+.++++...
T Consensus 415 ~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 415 NIYNLRSGKLVHA 427 (464)
T ss_dssp EEEETTTCCEEES
T ss_pred EEEECCCCcEEeh
Confidence 9999999998865
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.1e-38 Score=312.67 Aligned_cols=309 Identities=11% Similarity=0.136 Sum_probs=249.2
Q ss_pred ccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC
Q 009188 197 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~ 276 (540)
++..+.++.+.+|+... .+....+.+| ..+....|+|++++|++|+.||.|++||+..+ .....+.+|.
T Consensus 71 l~~~~~d~~v~i~d~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~ 139 (420)
T 3vl1_A 71 LYKARLDGHDFLFNTII-------RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQREIDQAHV 139 (420)
T ss_dssp EEEEEETTEEEEEECCS-------EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEEEETTSSS
T ss_pred EEEEEcCCcEEEEEecc-------cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---ceeeeccccc
Confidence 44555666777776432 2223344455 45566678999999999999999999998754 5666778999
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK 356 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 356 (540)
+.|++++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||++++......
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 219 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766554
Q ss_pred cc---ccceEEEE---------------------EEccCCCEEEEEecCCeEEEEECCCceE--EE-eecCCceeEEEEc
Q 009188 357 GQ---RTLKISDL---------------------EVTSDGKQIITMCKESALLLLDREAKVE--RY-IEEDQTITSFSLS 409 (540)
Q Consensus 357 ~~---~~~~v~~i---------------------~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~-~~~~~~i~~~~~s 409 (540)
.. +...+.++ +|+|+++.+++++.||.|++||+++... .. ..+...+.+++|+
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 299 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD 299 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC
T ss_pred ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEe
Confidence 42 23344444 4578999999999999999999988662 22 2367899999999
Q ss_pred CCCC-EEEEEecCCeEEEEEecCCceeeeEeeC-CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC---------
Q 009188 410 RDNK-FLLVNLLNQEIHLWNIEGEVKLVAKYKG-HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC--------- 478 (540)
Q Consensus 410 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------- 478 (540)
|++. ++++++.||.|++||+++...++..+.. +...+.. ++ .+++.++++++.||.|++||+...
T Consensus 300 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~---~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 375 (420)
T 3vl1_A 300 GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINN---VY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEF 375 (420)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEE---EE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceE---EE-eCCCCEEEEecCCccEEEEeccCCCCCccceec
Confidence 9998 9999999999999999987566677766 4444333 33 347889999999999999998763
Q ss_pred ceeEeecCCCCCeEEEEeCCCCCC--EEEEEeCCCcEEEecCCC
Q 009188 479 DLIGALPGHSGAVNCVSWNPANPH--MLASASDDRTIRIWGLKD 520 (540)
Q Consensus 479 ~~~~~~~~h~~~v~~l~~~~~~~~--~l~s~~~Dg~i~iw~~~~ 520 (540)
.....+.+|.+.|.+++|+|++.. .++++|.+|.+.+|++.+
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 376 ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 222345678899999999999841 577778899999999875
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-36 Score=301.30 Aligned_cols=283 Identities=17% Similarity=0.301 Sum_probs=235.4
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH 312 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 312 (540)
.++.|+||++ ++||+|. |++|+|||..++. ......+.+|...|++|+|+|+|++|++|+.||.|++||+.+++++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~-~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCC-EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 4778999975 4777776 8999999998663 22334456788999999999999999999999999999999999999
Q ss_pred EeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 313 VYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
.+.+|...+.+++++ +..+++|+.|+.+++||... .........+...+..+.++|++..+++++.|+.+++|+...
T Consensus 184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999988775 67999999999999999965 334445566777999999999999999999999999999876
Q ss_pred ce------EEEeecCCceeEEEEcCCC-CEEEEE--ecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEE
Q 009188 392 KV------ERYIEEDQTITSFSLSRDN-KFLLVN--LLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA 462 (540)
Q Consensus 392 ~~------~~~~~~~~~i~~~~~s~~~-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 462 (540)
.. .....+...|.+++|+|.+ ..++++ +.|+.|++||+.++ .....+..+... ... .+++++..++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~~~v---~~~-~~~~~~~~lv 336 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQV---CSI-LWSPHYKELI 336 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEECSSCE---EEE-EEETTTTEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeeccccce---eee-eecCCCCeEE
Confidence 43 4566788999999999976 455543 46899999999987 666666665542 223 3367777777
Q ss_pred Eee--CCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 463 SGS--EDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 463 s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
+++ .||.|+|||+.+++++.++.+|.+.|++++|+|++. +|+|||.||+|+|||+.+....++
T Consensus 337 ~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCSSCC--
T ss_pred EEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCCCccch
Confidence 654 799999999999999999999999999999999996 899999999999999987655443
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-37 Score=304.33 Aligned_cols=291 Identities=18% Similarity=0.273 Sum_probs=236.8
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec-CCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS-GHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
....+|.+.+.+.++++++..+++++.||.|++|++..+. ....+. .|...|.+++|+|++++|++|+.||.|++|
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGS---VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCC---EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCc---EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 3344777665554444445678899999999999998653 223333 489999999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC-CceEEEeeccccceEEEEEEccCCCEEEEEecCC
Q 009188 304 DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG-GKELECWKGQRTLKISDLEVTSDGKQIITMCKES 382 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~ 382 (540)
|+.+++.+..+..|...|.+++|+ ++.+++|+.||.|++||++ ..........+...|.+++|+|++..+++++.|+
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 999999999999999999999994 5799999999999999997 4555555666778999999999999999999999
Q ss_pred eEEEEECCCce--EEEeecCCceeEEEEcCCCC-EEEEEe--cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCC
Q 009188 383 ALLLLDREAKV--ERYIEEDQTITSFSLSRDNK-FLLVNL--LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE 457 (540)
Q Consensus 383 ~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 457 (540)
.|++||+.+.. .....+...|.+++|+|++. ++++++ .|+.|++||+.+. ..+..+..+ .. +..+.++++
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~~~-~~---v~~~~~s~~ 314 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAG-SQ---VTSLIWSPH 314 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEECS-SC---EEEEEECSS
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEeCC-Cc---EEEEEECCC
Confidence 99999998765 44557889999999999775 555544 6999999999887 566666533 33 344455899
Q ss_pred CcEEEE--eeCCCcEEEEECCCCcee--EeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 458 QAFIAS--GSEDSQVYIWHRASCDLI--GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 458 ~~~l~s--~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
+.++++ |+.||.|++||+.+++.. ..+.+|.+.|.+++|+|++. +|++++.||.|++|++.+++....
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC------
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccc
Confidence 999999 558999999999986654 44678999999999999996 999999999999999999887664
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8e-37 Score=344.12 Aligned_cols=306 Identities=23% Similarity=0.401 Sum_probs=256.0
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
....+.+|.+.|++++|+|+|++|++|+.||+|++||+.++ .....+.+|.+.|.+++|+|++++|++++.||.|++
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 44578899999999999999999999999999999999866 466778899999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEec--CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec
Q 009188 303 WDVSSGNCLHVYEKAGLGLVSCGWHP--DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 303 wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
||+.+++.+..+..|...|.+++|+| ++..+++|+.||.|++||++++........|...|.+++|+|+++.+++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99999999999999999999999999 5568999999999999999988887777788889999999999999999999
Q ss_pred CCeEEEEECCCceEE---------------------------------------------------------EeecCCce
Q 009188 381 ESALLLLDREAKVER---------------------------------------------------------YIEEDQTI 403 (540)
Q Consensus 381 d~~i~~~d~~~~~~~---------------------------------------------------------~~~~~~~i 403 (540)
||.|++||+.+.... ...+...+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 999999998664310 01456788
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEe--------------------------------
Q 009188 404 TSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRS-------------------------------- 451 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~-------------------------------- 451 (540)
.+++|+|+++++++++.+|.|++||+.+. .....+.+|...+..+.+
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~ 922 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVL 922 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecc
Confidence 99999999999999999999999999876 666666666655433322
Q ss_pred --------------------------------------------eeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCC
Q 009188 452 --------------------------------------------CFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGH 487 (540)
Q Consensus 452 --------------------------------------------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 487 (540)
+.++|++.++++|+.||.|++||+.+++.+..+.+|
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h 1002 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC
T ss_pred cceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC
Confidence 122344444444444445555555556667777889
Q ss_pred CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCce
Q 009188 488 SGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 488 ~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v 533 (540)
.+.|++++|+|++. ++++++.||.|++||+.+++......|...+
T Consensus 1003 ~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v 1047 (1249)
T 3sfz_A 1003 KKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTGDYVFLQAHQETV 1047 (1249)
T ss_dssp SSCCCCEEECSSSS-CEEEECSSSBEEEEETTTTEEECCBCCSSCE
T ss_pred CCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCceEEEecCCCcE
Confidence 99999999999996 8999999999999999998877665555544
No 47
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-37 Score=300.91 Aligned_cols=297 Identities=16% Similarity=0.235 Sum_probs=228.6
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC-ceEEEEEecCCCCCeEEEEECc--CCCeEEEeeCCCcE
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG-GVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCGVEEAV 300 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i 300 (540)
...+.+|.+.|++++|+|++++|++|+.||.|++||+..+. .......+.+|...|.+++|+| ++.+|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 35678999999999999999999999999999999998543 2356677889999999999999 69999999999999
Q ss_pred EEEECCCC---------eEEEEeecCCCcEEEEEEecC--CCEEEEEeCCCcEEEEecCCceEEEe-------------e
Q 009188 301 RRWDVSSG---------NCLHVYEKAGLGLVSCGWHPD--RKWIFSGANDKSICMWELGGKELECW-------------K 356 (540)
Q Consensus 301 ~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~ 356 (540)
++||+.++ +.+..+..|...|.+++|+|+ +++|++++.||.|++||+++...... .
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 668888899999999999999 99999999999999999975432111 1
Q ss_pred ccccceEEEEEEccC---CCEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcCCC----CEEEEEecCCeEE
Q 009188 357 GQRTLKISDLEVTSD---GKQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSRDN----KFLLVNLLNQEIH 425 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~---~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~ 425 (540)
..+...+.+++|+|+ +..+++++.++.+.+|+..... .....|...|++++|+|++ ++|++++.||.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 145567999999997 9999999999999888877654 3344688899999999998 8999999999999
Q ss_pred EEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE----eeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCC
Q 009188 426 LWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS----GSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANP 501 (540)
Q Consensus 426 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s----~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 501 (540)
+||++........ ...... ......++....++. +.....+.+|+....+.+..+.+|.+.|++++|+|++.
T Consensus 244 iwd~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 319 (351)
T 3f3f_A 244 IFKITEKLSPLAS-EESLTN---SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT 319 (351)
T ss_dssp EEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSC
T ss_pred EEeCCCCcCcccc-CCcccc---eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCC
Confidence 9999865222221 111111 111111223333333 33455677788788888999999999999999999996
Q ss_pred CEEEEEeCCCcEEEecCCCCCccc
Q 009188 502 HMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 502 ~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
+|++++.||.|++|++.+++...
T Consensus 320 -~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 320 -ILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp -CEEEEETTSCEEEEEECTTSCEE
T ss_pred -EEEEecCCCcEEEEecCcCcchh
Confidence 99999999999999999876554
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.7e-37 Score=296.96 Aligned_cols=293 Identities=15% Similarity=0.229 Sum_probs=244.4
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
|.++|.+++|+|||++++++..++.+.+|.... . .......+|...|.+++|+|++++|++++ ||.|++||+.+++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR--H-ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS--E-EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCC--c-cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 567899999999999999988888777775432 2 22333458999999999999999999999 9999999998765
Q ss_pred E---EEEee--cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce--EEEeeccccceEEEEEEccCCCEEEEEecCC
Q 009188 310 C---LHVYE--KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE--LECWKGQRTLKISDLEVTSDGKQIITMCKES 382 (540)
Q Consensus 310 ~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~ 382 (540)
. ...+. .|...|.+++|+|++++|++++.||.|++||+.++. .......+...+.+++|+|+++.+++++.++
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 3 33333 688899999999999999999999999999998765 4445556667899999999999999999999
Q ss_pred eEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcE
Q 009188 383 ALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 383 ~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 460 (540)
.|++||..+.. .....+...+.+++|+|+++++++++.||.|++||+++. .....+. +.... ..+.++|++.+
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~-~~~~v---~~~~~s~~~~~ 238 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQHD-FTSQI---FSLGYCPTGEW 238 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSSCE---EEEEECTTSSE
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-ceEeeec-CCCce---EEEEECCCCCE
Confidence 99999998876 444568899999999999999999999999999999887 5555554 33333 33444899999
Q ss_pred EEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCce
Q 009188 461 IASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v 533 (540)
+++++.||.|++||+.+++.. .+..|...|.+++|+|++. +|++++.||.|++|++.+++......+...+
T Consensus 239 l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v 309 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSKESSSV 309 (337)
T ss_dssp EEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred EEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEEecCCCcE
Confidence 999999999999999988764 5677999999999999996 9999999999999999999877655555544
No 49
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.9e-37 Score=296.01 Aligned_cols=287 Identities=13% Similarity=0.125 Sum_probs=244.6
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCC-eEEEeeCCCcEEE
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQ-QLLTCGVEEAVRR 302 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~i 302 (540)
+....+|.+.|++++|+|++++|++|+.||.|++|++...........+.+|...|.+++|+|+++ +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 345668999999999999999999999999999999987654444555668999999999999999 9999999999999
Q ss_pred EEC-CCCeEEEEeec--CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC---------ceEEEeeccccceEEEEEEcc
Q 009188 303 WDV-SSGNCLHVYEK--AGLGLVSCGWHPDRKWIFSGANDKSICMWELGG---------KELECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 303 wd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~i~~~~ 370 (540)
||+ .+++. ..+.. |...|.+++|+| ++.+++++.||.|++||+++ ........ +...+.+++|++
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 999 87765 67778 999999999999 99999999999999999975 44333333 566899999998
Q ss_pred CCCEEEEEecCCeEEEEECCC-ce----EEEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCC-----ceeeeEe
Q 009188 371 DGKQIITMCKESALLLLDREA-KV----ERYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGE-----VKLVAKY 439 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~-~~----~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~ 439 (540)
++ +++++.++.|++||+++ .. .....+...+.+++|+| +++++++++.+|.|++|+++.. ......+
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 87 99999999999999987 32 34556788999999999 9999999999999999999876 3566777
Q ss_pred eCCcCC------eeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCC-CCCeEEEEeCCCCCCEEEEEeCCCc
Q 009188 440 KGHKRS------RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGH-SGAVNCVSWNPANPHMLASASDDRT 512 (540)
Q Consensus 440 ~~~~~~------~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~Dg~ 512 (540)
..|... ...+..+.++|++++|++|+.||.|++||+.+++.+..+.+| .+.|++++ |++. +|++++.||.
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~ 315 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDT 315 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTH
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCC-eEEEEecCCc
Confidence 777540 112334444899999999999999999999999999999998 99999999 8885 9999999998
Q ss_pred -EEEecC
Q 009188 513 -IRIWGL 518 (540)
Q Consensus 513 -i~iw~~ 518 (540)
.+.|..
T Consensus 316 ~~~~~~~ 322 (342)
T 1yfq_A 316 FKTNAAI 322 (342)
T ss_dssp HHHCSSS
T ss_pred ccccccc
Confidence 665553
No 50
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.1e-38 Score=303.15 Aligned_cols=284 Identities=13% Similarity=0.096 Sum_probs=219.8
Q ss_pred cCcEEEEEEecCCCeEEEEeCCC-------cEEEEEeecCCce-------EEEEEecCCCCCeEEEEECcCCCeEEEe--
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDR-------SAIIWEVDLNGGV-------TLKHKLSGHQKPVSCVSWSSDDQQLLTC-- 294 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg-------~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~~~~~l~s~-- 294 (540)
..+|++++|+|||++|++||.+. .|++|+++..... .....+.+|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35899999999999999998643 5999998754321 1223567888999888775 4566655
Q ss_pred ---------eCCCcEEEEECCCCeE-EE---Eee-----cCCCcEEEEEEecCCCEEEEEe--CCCcEEEEecCCceEEE
Q 009188 295 ---------GVEEAVRRWDVSSGNC-LH---VYE-----KAGLGLVSCGWHPDRKWIFSGA--NDKSICMWELGGKELEC 354 (540)
Q Consensus 295 ---------~~dg~i~iwd~~~~~~-~~---~~~-----~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~ 354 (540)
+.|+.+++|++.++.. +. ... .+...+.+++|+|||+++++++ .|++|++||+.+.....
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 4577899999876432 11 111 2334588999999999987554 68999999999877766
Q ss_pred eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceE---EEeecCCceeEEEEcCCCCEEEEEecCC----eEEEE
Q 009188 355 WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE---RYIEEDQTITSFSLSRDNKFLLVNLLNQ----EIHLW 427 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~ 427 (540)
... +...|.+++|+|||+++++++.++.+.+|....... ....+...+.+++|+|+++++++++.++ .+++|
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 554 445899999999999999998666555554444432 2234677899999999999999999887 68889
Q ss_pred EecCCcee---eeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee-cCCCCCeEEEEeCCCCCCE
Q 009188 428 NIEGEVKL---VAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL-PGHSGAVNCVSWNPANPHM 503 (540)
Q Consensus 428 d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~ 503 (540)
++...... ...+.+|...+.. +.++|+|++||+|+.|++|+|||+.+++++..+ .+|.+.|++++|+|++. +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~---~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~-~ 326 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITS---MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST-Y 326 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEE---EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC-E
T ss_pred ccccceecceeeeeecCCCCCeEe---EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC-E
Confidence 98765322 3456677766444 344999999999999999999999999999875 78999999999999996 9
Q ss_pred EEEEeCCCcEEEecCCCC
Q 009188 504 LASASDDRTIRIWGLKDL 521 (540)
Q Consensus 504 l~s~~~Dg~i~iw~~~~~ 521 (540)
|+|||.|++|+||++...
T Consensus 327 laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSEEEEEECCTT
T ss_pred EEEEeCCCeEEEEEcCCC
Confidence 999999999999999653
No 51
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.9e-36 Score=284.01 Aligned_cols=293 Identities=17% Similarity=0.281 Sum_probs=232.6
Q ss_pred CCcceEEeccc--CcC--cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe
Q 009188 219 IPSRTLQILQG--HTD--EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC 294 (540)
Q Consensus 219 ~~~~~~~~l~~--h~~--~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 294 (540)
+|..+.++|.+ ..+ ..++|+||+++ +||+|. |++|+|||+.++.. .....+.+|...|++++|+|++++|++|
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~-~~~~~~~~~~~~V~~v~~~~~~~~l~sg 85 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAVG 85 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCE-EEEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCE-EEEEEecCCCCeEEEEEECCCCCEEEEE
Confidence 34455555543 222 35789999886 777765 89999999986632 2233456788899999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc-eEEEeeccccceEEEEEEccCCC
Q 009188 295 GVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK-ELECWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 295 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~ 373 (540)
+.||+|++||+++++++..+.+|...+.++.+ ++..+++++.++.+++|+.... ........+...+..+.+.++++
T Consensus 86 s~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 86 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163 (318)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred ECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence 99999999999999999999999988876655 5679999999999999998653 44445556677899999999999
Q ss_pred EEEEEecCCeEEEEECCCce------EEEeecCCceeEEEEcCCCCEEE---EEecCCeEEEEEecCCceeeeEeeCCcC
Q 009188 374 QIITMCKESALLLLDREAKV------ERYIEEDQTITSFSLSRDNKFLL---VNLLNQEIHLWNIEGEVKLVAKYKGHKR 444 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~---~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 444 (540)
.+++++.|+.|++||..+.. .....+...+.++.++|++..++ +++.++.|++||.... ....... +..
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~~~~-~~~ 241 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVD-AHS 241 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEEEEE-CSS
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccccccc-cee
Confidence 99999999999999998643 44556778899999999775433 4567899999999876 3333333 223
Q ss_pred CeeEEEeeeccCCCcEEEEe--eCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 445 SRFVIRSCFGGLEQAFIASG--SEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 445 ~~~~i~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
... ...+.+++..++++ +.||.|++||+.+++++.++.+|.+.|++++|+|++. +|+|||.||+|+|||+.+..
T Consensus 242 ~v~---~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 242 QVC---SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEE---EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCCC
T ss_pred eee---eeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCCC
Confidence 322 22336666666554 4899999999999999999999999999999999996 89999999999999997653
No 52
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-36 Score=289.61 Aligned_cols=275 Identities=18% Similarity=0.290 Sum_probs=229.6
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH 275 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h 275 (540)
.+++.+.|+.+.+|+.... ......++..+.+|...|++++|+|+|++|++|+.|++|++||+..+ +....+.+|
T Consensus 32 ~l~s~s~D~~v~~W~~~~~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~---~~~~~~~~h 106 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGD--DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG---ETYQRFVGH 106 (319)
T ss_dssp EEEEEETTSEEEEEEEEEE--TTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECC
T ss_pred EEEEecCCccEEEecCCCC--CccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC---CeeEEEccC
Confidence 4567788888999864321 11123467889999999999999999999999999999999999866 567788999
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC------CCEEEEEeCCCcEEEEecCC
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD------RKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~ 349 (540)
...|.+++|+|++.+|++|+.|++|++||+. ++++..+.+|...|.++.|+|. +..+++++.|+.|++||+++
T Consensus 107 ~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 185 (319)
T 3frx_A 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185 (319)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence 9999999999999999999999999999985 6678888899999999999985 44899999999999999998
Q ss_pred ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 350 KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 350 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
.........|...|.+++|+|+++++++++.|+.|++||+.+.. .........+.+++|+|++.++++++. +.+++|+
T Consensus 186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-~~i~v~~ 264 (319)
T 3frx_A 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFS 264 (319)
T ss_dssp TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET-TEEEEEE
T ss_pred chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-CCcEEEE
Confidence 88877777888899999999999999999999999999999876 445556788999999999999988874 5699999
Q ss_pred ecCCceeeeEeeCCcC-----CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC
Q 009188 429 IEGEVKLVAKYKGHKR-----SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 478 (540)
+... .....+..+.. ....+..+.++|+|++|++|+.||.|++||+.++
T Consensus 265 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 265 LDPQ-YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ETTE-EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eCcC-eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9875 44444432211 0111233444999999999999999999998764
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.8e-36 Score=298.51 Aligned_cols=284 Identities=21% Similarity=0.428 Sum_probs=248.6
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
....+.+|.+.|.. +++++|++|++|+.||+|++||+..+ .....+.+|.+.|.+++|+ ++++++|+.||.|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 34678899987643 35567999999999999999999765 5667889999999999997 669999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCC
Q 009188 303 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES 382 (540)
Q Consensus 303 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~ 382 (540)
||+.+++.+..+..|...|.++.|+ ++.+++|+.||.|++||+.++........+...+.++++ ++..+++++.|+
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred EECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 9999999999999999999999996 568999999999999999988777777777789999998 788999999999
Q ss_pred eEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcE
Q 009188 383 ALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 383 ~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 460 (540)
.|++||..+.. .....+...+.+++| ++.++++++.||.|++||+++. ..+..+.+|......+. +++++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~-----~~~~~ 331 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGME-----LKDNI 331 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEE-----EETTE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEE-----EeCCE
Confidence 99999998866 445568889999999 8899999999999999999887 67788888877655443 35789
Q ss_pred EEEeeCCCcEEEEECCCCceeEeecC---CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc
Q 009188 461 IASGSEDSQVYIWHRASCDLIGALPG---HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
+++|+.||.|++||+.+++.+..+.+ |...|++++|++ .++++++.||.|++||+.+++.....
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeee
Confidence 99999999999999999999999886 889999999964 48999999999999999999877654
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-37 Score=309.46 Aligned_cols=281 Identities=12% Similarity=0.141 Sum_probs=232.2
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
..+++++|+|+|++|++|+.||.|++||+... .....+..| ..+....|++++++|++++.||.|++||+.+++..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR---DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSE---ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccc---ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 34558999999999999999999999998743 222223344 44555578999999999999999999999999999
Q ss_pred EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 312 HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 312 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
..+..|...|.+++|+|++++|++|+.||.|++||+.++........|...|.+++|+|+++.+++++.|+.|++||+++
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 98889999999999999999999999999999999988776666667778999999999999999999999999999988
Q ss_pred ceEE-Eee----c---------------------CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCC
Q 009188 392 KVER-YIE----E---------------------DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS 445 (540)
Q Consensus 392 ~~~~-~~~----~---------------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 445 (540)
.... ... + ...+.+++|+|+++++++++.||.|++||+++..........|...
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence 6622 221 2 2445556678999999999999999999999875454444556666
Q ss_pred eeEEEeeeccCCCc-EEEEeeCCCcEEEEECCCCce-eEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 446 RFVIRSCFGGLEQA-FIASGSEDSQVYIWHRASCDL-IGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 446 ~~~i~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
+..+ .++|++. ++++|+.||.|++||+.+++. +..+.+ |...|+++.|. ++. +|++++.||.|++|++.+.
T Consensus 293 v~~~---~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 293 CNSL---TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEE---EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCT
T ss_pred ceeE---EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCC
Confidence 4443 3478888 999999999999999998754 677776 67788888665 564 9999999999999999874
No 55
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.4e-37 Score=296.90 Aligned_cols=287 Identities=17% Similarity=0.223 Sum_probs=206.8
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC------CCcEEEEECCCCe
Q 009188 236 FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV------EEAVRRWDVSSGN 309 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------dg~i~iwd~~~~~ 309 (540)
.+.+.+++.++ .++.+.....|++... ....|...|++++|+|||++|++|+. |+.|++|+..++.
T Consensus 10 g~d~g~~~~~~-~~~g~~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 10 GVDLGTENLYF-QSNGSSKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp --------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCCCccceEE-ecCCCccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 34455555444 4444677899987533 23579999999999999999999997 7789999988765
Q ss_pred EE----EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE----eeccccceEEEEEEccCCCEEEEEecC
Q 009188 310 CL----HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC----WKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 310 ~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
.. .....|...|.+++|+|++. +++++.||+|++||+.+++... ....|...|.+++|+|+++++++++.|
T Consensus 82 ~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 82 PNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp -CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred cceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 42 33446788999999999975 6678889999999997654332 233567789999999999999999999
Q ss_pred CeEEEEECCCce--EEEeecCCceeEEEEcCCCC-EEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCC-
Q 009188 382 SALLLLDREAKV--ERYIEEDQTITSFSLSRDNK-FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLE- 457 (540)
Q Consensus 382 ~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 457 (540)
+.|++||..++. ..+..|...|++++|+|++. ++++++.|+.|++||+++. +....+..+..........+ +|+
T Consensus 161 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~-sp~~ 238 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTW-HPEK 238 (357)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEE-CTTS
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhh-hhcc
Confidence 999999999876 45557889999999999874 7889999999999999876 44444433322222233334 554
Q ss_pred CcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCce
Q 009188 458 QAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 458 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~v 533 (540)
+.++++|+.|+.|++||+.+++.+..+.+|...|++++|+|++..+|++++.||+|+|||++++++.+...|...|
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V 314 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFV 314 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCE
T ss_pred cceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCE
Confidence 6789999999999999999999999999999999999999998778999999999999999999988777776665
No 56
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.4e-36 Score=284.33 Aligned_cols=259 Identities=15% Similarity=0.330 Sum_probs=224.4
Q ss_pred eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 009188 266 VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 345 (540)
Q Consensus 266 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 345 (540)
......+.+|.+.|++++|+|++++|++++.||.|++|++.+++....+..|...|.+++|+|++++|++|+.||.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCe
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQE 423 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 423 (540)
|++++........+...|.+++|+|+++.+++++.|+.|++||+++.. .....|..+|.+++|+|+++++++++.||.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 999887777777777899999999999999999999999999998765 445567889999999999999999999999
Q ss_pred EEEEEecCCceeeeEe-eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEE--EEeCCCC
Q 009188 424 IHLWNIEGEVKLVAKY-KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNC--VSWNPAN 500 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~--l~~~~~~ 500 (540)
|++||+++. ..+..+ ..+... +....++|+++++++++.||.|++||+.+++.+..+.+|...+.. ..+++.+
T Consensus 173 i~~wd~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 173 CRIWDTASG-QCLKTLIDDDNPP---VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp EEEEETTTC-CEEEEECCSSCCC---EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred EEEEECCCC-ceeeEEeccCCCc---eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence 999999887 444444 333333 334445899999999999999999999999999999988765432 3344333
Q ss_pred CCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 501 PHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 501 ~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
..++++|+.||.|++||+.++++.....
T Consensus 249 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp SCEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred CcEEEEECCCCEEEEEECCCchhhhhhh
Confidence 3599999999999999999998876643
No 57
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=287.52 Aligned_cols=248 Identities=15% Similarity=0.137 Sum_probs=205.9
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceE-EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT-LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
...|...|.+++|+|++ .|++|+.||+|+|||+..+.... ....+.+|.+.|++++|+|+|++|++|+.|++|++||+
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34467889999999985 68899999999999998765433 33456689999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCC-EEEEEeCCCcEEEEecCCceEEEee--ccccceEEEEEEccC-CCEEEEEecC
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHPDRK-WIFSGANDKSICMWELGGKELECWK--GQRTLKISDLEVTSD-GKQIITMCKE 381 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~-~~~l~~~~~d 381 (540)
.+++++..+.+|...|.+++|++++. .|++|+.||+|++||+++++..... ..+...+.+++|+|+ +.++++|+.|
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 99999999999999999999999875 7899999999999999876655433 234456899999985 5688899999
Q ss_pred CeEEEEECCCce--EEEeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCC
Q 009188 382 SALLLLDREAKV--ERYIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 382 ~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
+.|++||.++.. ..+..|...|++++|+|++ ++|++++.|+.|++||+++. ++ ..+.+|...+..+. ++|++
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~~-~~~~~H~~~V~~v~---~sp~~ 311 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-EL-FRSQAHRDFVRDAT---WSPLN 311 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-EE-EEECCCSSCEEEEE---ECSSS
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-cE-EEEcCCCCCEEEEE---EeCCC
Confidence 999999998766 6667899999999999998 57999999999999999876 43 45678888755543 37776
Q ss_pred c-EEEEeeCCCcEEEEECCCCce
Q 009188 459 A-FIASGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 459 ~-~l~s~s~dg~i~iwd~~~~~~ 480 (540)
. +|++|+.||+|++|++.+...
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC---
T ss_pred CeEEEEEcCCCeEEEEECCCCCC
Confidence 5 678999999999999976543
No 58
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.5e-36 Score=299.22 Aligned_cols=281 Identities=20% Similarity=0.376 Sum_probs=238.2
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
+....+|...|+|++| ++++|++|+.||.|++||+.++ +....+.+|.+.|.+++| ++++|++|+.||.|++|
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC---eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 3444568888999887 7999999999999999999765 566778999999999999 78899999999999999
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEE---EeeccccceEEEEEEccCCCEEEEEec
Q 009188 304 DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELE---CWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
|+.+++.+..+..|...|.+++|+ +..+++|+.||.|++||+.+.... .....+...|.++++ +++.+++++.
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 999999999999999999999997 459999999999999999765433 455667778999998 7899999999
Q ss_pred CCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCC
Q 009188 381 ESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 381 d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
||.|++||..+.. .....+...+.++++ +++++++|+.||.|++||++++ ..+..+.+|...+..+.+ ++
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~-----~~ 346 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF-----DN 346 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC-----CS
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe-----cC
Confidence 9999999998865 455568889999998 5789999999999999999987 778888888887655433 78
Q ss_pred cEEEEeeCCCcEEEEECCCCc---------eeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 459 AFIASGSEDSQVYIWHRASCD---------LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
.++++|+.||.|++||+.++. .+..+.+|.+.|++++| ++. .|++++.||.|++||+.+......
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF-QIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-CEEECCSSSEEEEEC---------
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC-EEEEEeCCCEEEEEECCCCCCccc
Confidence 899999999999999998776 78899999999999999 454 799999999999999998765544
No 59
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-35 Score=286.18 Aligned_cols=261 Identities=18% Similarity=0.270 Sum_probs=225.6
Q ss_pred EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEec
Q 009188 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 347 (540)
....+.+|.+.|++++|+|++++|++|+.||+|++||..+++....+..+...|.+++|+|++..+++|+.|+.+++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc------eEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcC--CCCEEEE
Q 009188 348 GGK------ELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSR--DNKFLLV 417 (540)
Q Consensus 348 ~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~--~~~~l~~ 417 (540)
... ........|...|.+++|+|++..+++++.|++|++||+.+.. ..+..|...|.+++++| +++++++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 532 1222334566789999999999999999999999999998866 45567889999999988 5689999
Q ss_pred EecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCC--CCCeEEEE
Q 009188 418 NLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGH--SGAVNCVS 495 (540)
Q Consensus 418 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~ 495 (540)
|+.||.|++||+++. ..+..+.+|...+..+. ++|++.++++|+.|++|++||+++++.+..+..+ ...+.+++
T Consensus 216 gs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~---~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSG-QCVQAFETHESDVNSVR---YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp EETTSCEEEEETTTC-CEEEEECCCSSCEEEEE---ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EeCCCeEEEEECCCC-cEEEEecCCCCCeEEEE---EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 999999999999987 67888888888755543 3889999999999999999999998887766543 35789999
Q ss_pred eCCCCCCEEEEEeCCCcEEEecCCCCCcccc-ccCCCce
Q 009188 496 WNPANPHMLASASDDRTIRIWGLKDLNVKRK-DCHSNGV 533 (540)
Q Consensus 496 ~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~-~~~~~~v 533 (540)
|+|++. +|++++.||.|++||+.+++.... ..|.+.|
T Consensus 292 ~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 292 FSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329 (354)
T ss_dssp ECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred EeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcE
Confidence 999996 999999999999999998886655 3444444
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.7e-35 Score=294.62 Aligned_cols=297 Identities=20% Similarity=0.418 Sum_probs=256.1
Q ss_pred ccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC
Q 009188 197 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~ 276 (540)
++.++.++.+.+|+.. ..+.+..+.+|.+.|++++|+ ++++++|+.||+|++||+..+ .....+.+|.
T Consensus 132 l~sg~~dg~i~vwd~~-------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~ 199 (445)
T 2ovr_B 132 IVSGSDDNTLKVWSAV-------TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG---ECIHTLYGHT 199 (445)
T ss_dssp EEEEETTSCEEEEETT-------TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT---EEEEEECCCS
T ss_pred EEEEECCCcEEEEECC-------CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC---cEEEEECCCC
Confidence 4556667777777543 356788899999999999997 669999999999999999766 6677889999
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK 356 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 356 (540)
..|.++.|+ ++.+++|+.||.|++||+.+++.+..+..|...|.+++| +++.+++|+.||.|++||++++......
T Consensus 200 ~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (445)
T 2ovr_B 200 STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe
Confidence 999999995 568999999999999999999999999999999999999 6889999999999999999888877777
Q ss_pred ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce
Q 009188 357 GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
..+...+.++.+ ++..+++++.|+.|++||..+.. .....+...+.++.+ +++++++++.||.|++||+++. .
T Consensus 276 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~ 350 (445)
T 2ovr_B 276 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-Q 350 (445)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-C
T ss_pred cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-c
Confidence 777789999999 88999999999999999998866 444567777877776 5679999999999999999877 6
Q ss_pred eeeEeeC---CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee-----cCCCCCeEEEEeCCCCCCEEEE
Q 009188 435 LVAKYKG---HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL-----PGHSGAVNCVSWNPANPHMLAS 506 (540)
Q Consensus 435 ~~~~~~~---~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~l~s 506 (540)
.+..+.. |...+..+.+ ++.++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++. ++++
T Consensus 351 ~~~~~~~~~~~~~~v~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~la~ 424 (445)
T 2ovr_B 351 CLQTLQGPNKHQSAVTCLQF-----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAV 424 (445)
T ss_dssp EEEEECSTTSCSSCEEEEEE-----CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-EEEE
T ss_pred EEEEEccCCCCCCCEEEEEE-----CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE-EEEE
Confidence 6777776 4444443322 4689999999999999999999999888 46889999999999985 9999
Q ss_pred EeCCCc----EEEecCCC
Q 009188 507 ASDDRT----IRIWGLKD 520 (540)
Q Consensus 507 ~~~Dg~----i~iw~~~~ 520 (540)
++.||+ |.+||+..
T Consensus 425 ~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 425 GSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ECSSSSSCCEEEEEECCC
T ss_pred cccCCCCccEEEEEECCC
Confidence 999998 99999975
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=301.91 Aligned_cols=286 Identities=16% Similarity=0.315 Sum_probs=230.7
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC--------ceEEEEEecCCC------------CCeEEEEECcCC
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG--------GVTLKHKLSGHQ------------KPVSCVSWSSDD 288 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~~~~h~------------~~v~~l~~s~~~ 288 (540)
.|.+.|++++|+|+|++||+|+.||.|+||++.... .......+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 378999999999999999999999999999997543 233567888998 899999999998
Q ss_pred --CeEEEeeCCCcEEEEECCCCeEE---------------------------------------EE-eecCCCcEEEEEE
Q 009188 289 --QQLLTCGVEEAVRRWDVSSGNCL---------------------------------------HV-YEKAGLGLVSCGW 326 (540)
Q Consensus 289 --~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~ 326 (540)
..|++++.|+.|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3578899999999
Q ss_pred ecCCCEEEEEeCCCcEEEEecCC-ceEEE-------eeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCCce----
Q 009188 327 HPDRKWIFSGANDKSICMWELGG-KELEC-------WKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREAKV---- 393 (540)
Q Consensus 327 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~---- 393 (540)
+|++++|++| .||.|++||++. ..... ....+...|.+++|+|++ ..+++++.|+.|++||+++..
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 799999999983 33333 134566789999999999 999999999999999988754
Q ss_pred --EEEeecCC------------ceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCee------------
Q 009188 394 --ERYIEEDQ------------TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRF------------ 447 (540)
Q Consensus 394 --~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------ 447 (540)
..+..+.. .|.+++|+|++++|++++. +.|++||++....++..+.+|.....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 33334443 8999999999999999998 99999999874477888887754221
Q ss_pred EEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec---------------------------------CCCCCeEEE
Q 009188 448 VIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP---------------------------------GHSGAVNCV 494 (540)
Q Consensus 448 ~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------------------------------~h~~~v~~l 494 (540)
.+..+.++|++.+|++|+.||.|++||+.+++.+. +. .+...|..+
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 01113348999999999999999999999987753 22 234578999
Q ss_pred EeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 495 SWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 495 ~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
+|+|++. +|++++.++ +++|.-+
T Consensus 423 ~~~p~~~-~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKEN-IIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSS-EEEEECSSC-EEEEECC
T ss_pred EECCCCC-EEEEEecce-eeeeccc
Confidence 9999996 888888775 7777643
No 62
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6e-36 Score=291.16 Aligned_cols=299 Identities=16% Similarity=0.275 Sum_probs=244.2
Q ss_pred CCCCcceEEecccCcCcEEEEEEecC---CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEE
Q 009188 217 DQIPSRTLQILQGHTDEVWFLQFSHN---GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLT 293 (540)
Q Consensus 217 ~~~~~~~~~~l~~h~~~V~~~~~sp~---g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 293 (540)
...|.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+...+ ......+.+|.+.|.+++|+|++++|++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-CEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-ceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 34567788999999999999999999 6999999999999999998532 2444678899999999999999999999
Q ss_pred eeCCCcEEEEECCCCeEEEEeecCCCcEEEEEE--ecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC
Q 009188 294 CGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGW--HPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
++.||.|++||+.+++... +..|...|.+++| ++++.+|++++.||.|++||++++........+. .+.++.+.
T Consensus 104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-- 179 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI-- 179 (368)
T ss_dssp EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--
T ss_pred EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--
Confidence 9999999999999998776 4578999999999 8899999999999999999998766555444443 45555555
Q ss_pred CCEEEEEecCCeEEEEECCCceEEEe----ecCCceeEEEEcCCCCE----EEEEecCCeEEEEEecCCc--eeeeEeeC
Q 009188 372 GKQIITMCKESALLLLDREAKVERYI----EEDQTITSFSLSRDNKF----LLVNLLNQEIHLWNIEGEV--KLVAKYKG 441 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~i~~~~~s~~~~~----l~~~~~dg~i~i~d~~~~~--~~~~~~~~ 441 (540)
+..+++++.++.+.+|+......... .....+.++++.++... +++++.||.|++||++... .....+..
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 55899999999999999987652222 23455666777665544 9999999999999998753 34556666
Q ss_pred CcCCe---------eEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCc
Q 009188 442 HKRSR---------FVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRT 512 (540)
Q Consensus 442 ~~~~~---------~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~ 512 (540)
|.... ..+..+.++|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++. +|++++.|+.
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~s~d~~ 338 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGN-IFAYASSYDW 338 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSS-CEEEEECCCS
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCC-eEEEEecccc
Confidence 65421 0244445589999999999999999999999999999999999999999999996 8999999987
Q ss_pred EEEecCCCC
Q 009188 513 IRIWGLKDL 521 (540)
Q Consensus 513 i~iw~~~~~ 521 (540)
.+.|++-+.
T Consensus 339 ~~~~~~~~~ 347 (368)
T 3mmy_A 339 SKGHEFYNP 347 (368)
T ss_dssp TTCGGGCCT
T ss_pred cccccccCC
Confidence 666665443
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-36 Score=288.73 Aligned_cols=267 Identities=23% Similarity=0.323 Sum_probs=206.2
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc--CCCeEEEeeCCCcEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCGVEEAVRR 302 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~i 302 (540)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..+ .......+.+|.++|.+++|++ ++++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 456799999999999999999999999999999999754 2235677899999999999986 4899999999999999
Q ss_pred EECCCC--eEEEEeecCCCcEEEEEEecC--CCEEEEEeCCCcEEEEecCCce---EEEeeccccceEEEEEEccCCCEE
Q 009188 303 WDVSSG--NCLHVYEKAGLGLVSCGWHPD--RKWIFSGANDKSICMWELGGKE---LECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 303 wd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
||++++ +....+.+|...|.+++|+|+ +.+|++|+.||.|++||+++.. .......|...+.+++|+|++..
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~- 164 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP- 164 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC-
Confidence 999987 466778889999999999997 7899999999999999997642 12334456667888888887421
Q ss_pred EEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc--eeeeEeeCCcCCeeEEEeee
Q 009188 376 ITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV--KLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~i~~~~ 453 (540)
+.+ .+.. .. ...+.+++|++++.|+.|++||++... .....+.+|...+..+.
T Consensus 165 ------~~~--~~~~---------~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~--- 219 (316)
T 3bg1_A 165 ------GSL--IDHP---------SG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA--- 219 (316)
T ss_dssp --------------C---------CS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE---
T ss_pred ------ccc--cccc---------cc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE---
Confidence 000 0000 00 011246789999999999999997542 45667888887755443
Q ss_pred ccCCC----cEEEEeeCCCcEEEEECCCCc----eeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 454 GGLEQ----AFIASGSEDSQVYIWHRASCD----LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 454 ~~~~~----~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
++|++ .+|++|+.||+|++||+.+.. ....+.+|.+.|++++|+|++. +|++++.||+|++|+..
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence 46765 899999999999999987631 2234567899999999999996 89999999999999986
No 64
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.7e-36 Score=287.22 Aligned_cols=275 Identities=19% Similarity=0.293 Sum_probs=220.0
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH 275 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h 275 (540)
.+++++.|+.+.+|+............+...+.+|...|++++|+|++.++++|+.|++|++||+..+ .....+.+|
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~h 117 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---TTYKRFVGH 117 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS---CEEEEEECC
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEEEcCC
Confidence 45778889999999765332222234567789999999999999999999999999999999999866 456778899
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee---cCCCcEEEEEEecCC----------CEEEEEeCCCcE
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE---KAGLGLVSCGWHPDR----------KWIFSGANDKSI 342 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~~~~~dg~i 342 (540)
...|.+++|+|++++|++++.|+.|++||+.. ....... .|...|.+++|+|++ .+|++++.||.|
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 99999999999999999999999999999974 4444443 678889999999986 789999999999
Q ss_pred EEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCc-e-EEEeecCCceeEEEEcCCCCEEEEEec
Q 009188 343 CMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK-V-ERYIEEDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~-~-~~~~~~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
++||... ........|...|.+++|+|+|++|++++.|+.|++||+... . .....+...|.+++|+|++.+++++ .
T Consensus 197 ~iwd~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~ 274 (343)
T 2xzm_R 197 KVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-T 274 (343)
T ss_dssp EEEETTT-EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-E
T ss_pred EEEcCCC-ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-C
Confidence 9999654 344444556679999999999999999999999999998432 2 3334456789999999999887655 5
Q ss_pred CCeEEEEEecCCcee-eeEee-----------CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc
Q 009188 421 NQEIHLWNIEGEVKL-VAKYK-----------GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 421 dg~i~i~d~~~~~~~-~~~~~-----------~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
|+.|++||+.+.... +..+. +|... +..+.++|++.+|++|+.||.|++|++.++.
T Consensus 275 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ---CTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC---EEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc---eEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 888999999765221 11222 34443 3344459999999999999999999987653
No 65
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=282.74 Aligned_cols=253 Identities=17% Similarity=0.328 Sum_probs=214.7
Q ss_pred eEEEEEecCCCC-CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE---EeecCCCcEEEEEEecCCCEEEEEeCCCc
Q 009188 266 VTLKHKLSGHQK-PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH---VYEKAGLGLVSCGWHPDRKWIFSGANDKS 341 (540)
Q Consensus 266 ~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 341 (540)
.....++.+|.+ .|.+++|+|+|++|++|+.|++|++||+.++.... ...+|...|.+++|+|++++|++|+.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456778889988 99999999999999999999999999998886432 23578999999999999999999999999
Q ss_pred EEEEecCCce--EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-----EEEeecCCceeEEEEcCCCCE
Q 009188 342 ICMWELGGKE--LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-----ERYIEEDQTITSFSLSRDNKF 414 (540)
Q Consensus 342 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~ 414 (540)
|++||+.... .......|...|.+++|+|++++|++++.|+.|++||+.... .....|...|.+++|+|++++
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 9999997653 445566777899999999999999999999999999987642 344568889999999999999
Q ss_pred EEEEecCCeEEEEEecCCc-eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC---------------
Q 009188 415 LLVNLLNQEIHLWNIEGEV-KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC--------------- 478 (540)
Q Consensus 415 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------- 478 (540)
|++++.|+.|++||.+... .....+.+|...+..+. ++|++++|++|+.||+|++||....
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~---~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA---FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE---ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE---ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 9999999999999998763 34567888888755543 4899999999999999999996322
Q ss_pred ceeEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 479 DLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 479 ~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
+++..+.+ |...|++++|+|++. .|++++.|+.|++|+...+.
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTS
T ss_pred ceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCC
Confidence 23445555 889999999999996 89999999999999987653
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=311.51 Aligned_cols=316 Identities=12% Similarity=0.077 Sum_probs=226.3
Q ss_pred ccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecC------CCeEEEEeCCCcEEEEEeecCCce----
Q 009188 197 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHN------GKYLASSSNDRSAIIWEVDLNGGV---- 266 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~------g~~l~tg~~dg~i~iwd~~~~~~~---- 266 (540)
+.+.+.|+.+.+|+.... .........+.+|.+.|++++|+|+ +.+||+|+.||+|+|||+..+...
T Consensus 176 laS~s~D~tI~iWd~~~~---~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTS---TLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp ------CEEEEEEEEETT---TCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hccCCCCceEEEEEccCC---CCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 456677888889974321 1111223557788999999999997 579999999999999999754211
Q ss_pred ----EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe-EEEEeecCCCcEEEE--EEecCC-CEEEEEeC
Q 009188 267 ----TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN-CLHVYEKAGLGLVSC--GWHPDR-KWIFSGAN 338 (540)
Q Consensus 267 ----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~ 338 (540)
.....+.+|...|++++|+++ ..|++|+.||+|++||+.++. ....+..|...|.++ +|+|++ .+|++|+.
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred eeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 112467899999999999986 489999999999999999774 456688999999999 567887 89999999
Q ss_pred CCcEEEEecCCceEEEeecccc--ceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCE
Q 009188 339 DKSICMWELGGKELECWKGQRT--LKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKF 414 (540)
Q Consensus 339 dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~ 414 (540)
|++|++||+++.........+. ..+.+++|+|++..+++++.|++|++||.++.. .....|...|++++|+|++++
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM 411 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB
T ss_pred CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCe
Confidence 9999999998754332222221 247889999999999999999999999998755 556789999999999999999
Q ss_pred EEEEecCCeEEEEEecCCceeeeEeeCCc--CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC-CCceeEeecCCCCCe
Q 009188 415 LLVNLLNQEIHLWNIEGEVKLVAKYKGHK--RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA-SCDLIGALPGHSGAV 491 (540)
Q Consensus 415 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v 491 (540)
|++|+.||+|++||+... ......... .....+....++|++..+. ...+ +.+|+.. ++..+..+.+|...|
T Consensus 412 l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V 486 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINI 486 (524)
T ss_dssp CEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSC
T ss_pred EEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceE
Confidence 999999999999998653 222111110 0111232334478887553 2222 3344332 567788899999999
Q ss_pred EEEEeCCCCC--CEEEEEeCCCcEEEecCCCC
Q 009188 492 NCVSWNPANP--HMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 492 ~~l~~~~~~~--~~l~s~~~Dg~i~iw~~~~~ 521 (540)
++|+|+|+++ ..+++|+.||.|+||++.-.
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 9999999962 48999999999999998753
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-35 Score=333.45 Aligned_cols=301 Identities=19% Similarity=0.302 Sum_probs=250.4
Q ss_pred CCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc--CCCeEEEee
Q 009188 218 QIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCG 295 (540)
Q Consensus 218 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~ 295 (540)
....+.+..+.+|.+.|++++|+|+|++|++|+.||.|++||+.++ .....+.+|...|.+++|+| ++.++++|+
T Consensus 644 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~ 720 (1249)
T 3sfz_A 644 AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720 (1249)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSCCEEEEEE
T ss_pred CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEecCCCceEEEEEe
Confidence 3445678889999999999999999999999999999999999866 56677889999999999999 556899999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe--------------------
Q 009188 296 VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW-------------------- 355 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------- 355 (540)
.|+.|++||+.++++...+.+|...|.+++|+|+++++++++.||.|++||+.++.....
T Consensus 721 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 999999999999999999999999999999999999999999999999999865432211
Q ss_pred -----------------------------------eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEee
Q 009188 356 -----------------------------------KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIE 398 (540)
Q Consensus 356 -----------------------------------~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~ 398 (540)
...+...+.+++|+|++..+++++.++.|++||..+.. .....
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 880 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG 880 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC
Confidence 11345567888899999999999999999999988766 44556
Q ss_pred cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC----------------------------------------------
Q 009188 399 EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE---------------------------------------------- 432 (540)
Q Consensus 399 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------------------------------------------- 432 (540)
|...|.+++|+|+++++++++.||.|++||+.+.
T Consensus 881 h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1249)
T 3sfz_A 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 960 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC
T ss_pred CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc
Confidence 7888888888888888888888888888885420
Q ss_pred --------------------------------ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce
Q 009188 433 --------------------------------VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 433 --------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 480 (540)
......+.+|...+.. +.++|+++++++++.||.|++||+.+++.
T Consensus 961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~---l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH---IQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC---EEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred cCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE---EEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 0122233344444333 34488999999999999999999999887
Q ss_pred eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc
Q 009188 481 IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 481 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
.. +.+|...|.+++|+|++ .+++++.||.|++||+.+++.....
T Consensus 1038 ~~-~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~ 1081 (1249)
T 3sfz_A 1038 VF-LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDF 1081 (1249)
T ss_dssp EC-CBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEE
T ss_pred EE-EecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEE
Confidence 64 55799999999999966 6899999999999999999877653
No 68
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=282.41 Aligned_cols=273 Identities=16% Similarity=0.266 Sum_probs=210.8
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEec-cc-CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCC----ceEEE
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQIL-QG-HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG----GVTLK 269 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~----~~~~~ 269 (540)
.+++.+.|+.+.+|+.... .......+ .+ |.+.|++++|+|++++|++|+.|++|+||++.... .....
T Consensus 26 ~las~~~D~~i~lw~~~~~-----~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYD-----DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEEEEESSSCEEEEECSSS-----CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEE
T ss_pred EEEEEcCCCEEEEEEecCC-----CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeE
Confidence 3456778888888865321 12344455 44 99999999999999999999999999999985321 23456
Q ss_pred EEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC----CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 009188 270 HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS----GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 345 (540)
Q Consensus 270 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 345 (540)
..+.+|.+.|.+++|+|++++|++|+.|++|++||+.. .+++..+..|...|.+++|+|++.+|++|+.|++|++|
T Consensus 101 ~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW 180 (330)
T 2hes_X 101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180 (330)
T ss_dssp EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 77899999999999999999999999999999999943 35678888999999999999999999999999999999
Q ss_pred ecCCc--eEEEeeccccceEEEEEEccC--CCEEEEEecCCeEEEEECCCc--------e-E-EEe-ecCCceeEEEEcC
Q 009188 346 ELGGK--ELECWKGQRTLKISDLEVTSD--GKQIITMCKESALLLLDREAK--------V-E-RYI-EEDQTITSFSLSR 410 (540)
Q Consensus 346 d~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~~d~~~~--------~-~-~~~-~~~~~i~~~~~s~ 410 (540)
|..+. ........|...|.+++|+|+ +..+++++.|++|++||+... . . ... .|...|.+++|++
T Consensus 181 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~ 260 (330)
T 2hes_X 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF 260 (330)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT
T ss_pred ECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC
Confidence 98665 455566677789999999999 778999999999999998653 1 1 122 2788999999997
Q ss_pred CCCEEEEEecCCeEEEEEecCCc-eee-eEeeCCcC-CeeEEEeeeccC--CCcEEEEeeCCCcEEEEECCC
Q 009188 411 DNKFLLVNLLNQEIHLWNIEGEV-KLV-AKYKGHKR-SRFVIRSCFGGL--EQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 411 ~~~~l~~~~~dg~i~i~d~~~~~-~~~-~~~~~~~~-~~~~i~~~~~~~--~~~~l~s~s~dg~i~iwd~~~ 477 (540)
++ ++++++.||.|++||..++. ... ....+|.. .+..+ .++| ++.+|++|+.||+|++||+.+
T Consensus 261 ~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v---~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 261 NG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV---KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE---EEC-----CCEEEEETTSEEEEEEC--
T ss_pred CC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE---EEecCCCceEEEEecCCCcEEEEEecc
Confidence 65 89999999999999997652 122 23345654 44443 3356 688999999999999999864
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-34 Score=301.96 Aligned_cols=308 Identities=15% Similarity=0.226 Sum_probs=242.4
Q ss_pred cceEEecccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCCCC---CeEEEEECcC-CCeEEEee
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK---PVSCVSWSSD-DQQLLTCG 295 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~-~~~l~s~~ 295 (540)
.+.+..+.+|.+.|++++|+|+++ .+++|+.||.|++||+... .....+.+|.. .|.+++|+|+ +++|++++
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence 456788899999999999999998 7999999999999998654 67778889999 9999999999 99999999
Q ss_pred CCCcEEEEECCCCeEEEEe-e---cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc----cceEEEEE
Q 009188 296 VEEAVRRWDVSSGNCLHVY-E---KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR----TLKISDLE 367 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~ 367 (540)
.||.|++||+.+++.+..+ . .|...|.+++|+ ++++|++++.||.|++||++++........+ ...+.++.
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 9999999999999999999 6 899999999999 9999999999999999999877665544433 35677777
Q ss_pred EccCCCEEEEEecCCeEEEEECCCce--EEEeecCCc---------------------------------eeEEEEcCCC
Q 009188 368 VTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQT---------------------------------ITSFSLSRDN 412 (540)
Q Consensus 368 ~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~---------------------------------i~~~~~s~~~ 412 (540)
++ ++..+++++.++.+++||..+.. .....|... |.+++| +++
T Consensus 306 ~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~ 383 (615)
T 1pgu_A 306 AT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA 383 (615)
T ss_dssp EE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST
T ss_pred eC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC
Confidence 75 88899999999999999987644 222233333 333333 224
Q ss_pred CEEEEEecCCeEEEEE----------------------------------------------------------------
Q 009188 413 KFLLVNLLNQEIHLWN---------------------------------------------------------------- 428 (540)
Q Consensus 413 ~~l~~~~~dg~i~i~d---------------------------------------------------------------- 428 (540)
..+++++.|+.+++||
T Consensus 384 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (615)
T 1pgu_A 384 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463 (615)
T ss_dssp TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE
T ss_pred cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee
Confidence 4444544444444444
Q ss_pred ----------ecCCceee-eEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC-CCCCeEEEEe
Q 009188 429 ----------IEGEVKLV-AKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSW 496 (540)
Q Consensus 429 ----------~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~ 496 (540)
+.+. ... ..+..|...+ ..+.++|++++|++++.||.|++||+.+++.+..+.+ |...|++++|
T Consensus 464 ~~d~~i~~~~~~~~-~~~~~~~~~~~~~v---~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~ 539 (615)
T 1pgu_A 464 EEGNTIQVFKLSDL-EVSFDLKTPLRAKP---SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISW 539 (615)
T ss_dssp TTTSCEEEEETTEE-EEEEECSSCCSSCE---EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEE
T ss_pred cCCCeEEEEECCCc-cccccccCCccCce---EEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEE
Confidence 4332 111 3334444443 3444489999999999999999999999999999988 9999999999
Q ss_pred CC----------CCCCEEEEEeCCCcEEEecCCCC-Ccccc-ccCCCce---EeccCC
Q 009188 497 NP----------ANPHMLASASDDRTIRIWGLKDL-NVKRK-DCHSNGV---HYCNGG 539 (540)
Q Consensus 497 ~~----------~~~~~l~s~~~Dg~i~iw~~~~~-~~~~~-~~~~~~v---~~c~~g 539 (540)
+| ++. +|++++.||.|++||+.++ +.... ..|...+ .|+..|
T Consensus 540 sp~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 540 KPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 596 (615)
T ss_dssp CCCC------CCSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred cCccccccccccCCC-EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC
Confidence 99 885 9999999999999999997 55554 3455544 444443
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-35 Score=277.73 Aligned_cols=246 Identities=11% Similarity=0.212 Sum_probs=208.6
Q ss_pred EecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC--CeEEEEeecCCCcEEEEEEec--CCCEEEEEeCCCcEEEEe
Q 009188 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS--GNCLHVYEKAGLGLVSCGWHP--DRKWIFSGANDKSICMWE 346 (540)
Q Consensus 271 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 346 (540)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+.+ ++.+..+.+|..+|.+++|++ ++++|++|+.||+|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 4678999999999999999999999999999999975 467888999999999999986 488999999999999999
Q ss_pred cCCce--EEEeeccccceEEEEEEccC--CCEEEEEecCCeEEEEECCCc----eEEEeecCCceeEEEEcCC-------
Q 009188 347 LGGKE--LECWKGQRTLKISDLEVTSD--GKQIITMCKESALLLLDREAK----VERYIEEDQTITSFSLSRD------- 411 (540)
Q Consensus 347 ~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~i~~~~~s~~------- 411 (540)
++++. .......|...|.+++|+|+ +..+++++.|+.|++||++.. ......|...+.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 98653 23334556678999999998 899999999999999999764 2455678899999999997
Q ss_pred ------CCEEEEEecCCeEEEEEecCCc---eeeeEeeCCcCCeeEEEeeeccCC---CcEEEEeeCCCcEEEEECCCCc
Q 009188 412 ------NKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGHKRSRFVIRSCFGGLE---QAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 412 ------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
+++|++++.|+.|++||++... .....+.+|...+..+.+ +|+ +.+|++++.|++|++||+.++.
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~---sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW---SPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE---CCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE---CCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 5799999999999999998653 255678888887655544 666 5899999999999999988753
Q ss_pred ---eeEee--cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 480 ---LIGAL--PGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 480 ---~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
....+ .+|...|.+++|+|++. +|++++.||.|++|+...
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 241 GPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred CccceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence 12233 46889999999999996 899999999999999863
No 71
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-36 Score=296.90 Aligned_cols=256 Identities=13% Similarity=0.257 Sum_probs=222.7
Q ss_pred EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 009188 267 TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 346 (540)
....++.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCce-------EEEeeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCCceEE--E-----eecCCceeEEEEcC-
Q 009188 347 LGGKE-------LECWKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREAKVER--Y-----IEEDQTITSFSLSR- 410 (540)
Q Consensus 347 ~~~~~-------~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~--~-----~~~~~~i~~~~~s~- 410 (540)
+.+.. .......|...+.++.|.|++ ..+++++.|++|++||+.++... + ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 86422 223345666788999999874 57999999999999999886622 2 35778899999987
Q ss_pred CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC--
Q 009188 411 DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS-- 488 (540)
Q Consensus 411 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-- 488 (540)
+++++++|+.|+.|++||++.....+..+.+|...+..+.+ +|++.+|++|+.||+|++||+.+++.+..+..+.
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~---~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF---FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE---CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE---ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence 88999999999999999998655778889999988666544 8899999999999999999999999888776543
Q ss_pred -----CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 489 -----GAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 489 -----~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
..|++++|+|++. +|++|+.||.|++||+.+++....
T Consensus 294 ~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~ 335 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLN 335 (380)
T ss_dssp SCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEE
T ss_pred cccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEE
Confidence 3489999999996 999999999999999988876543
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-35 Score=279.30 Aligned_cols=248 Identities=15% Similarity=0.261 Sum_probs=205.3
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc--CCCeEEEeeCCCcEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS--DDQQLLTCGVEEAVRR 302 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~i 302 (540)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.... ......+.+|.++|.+++|++ ++++|++|+.|++|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 4678999999999999999999999999999999986432 235567899999999999986 3899999999999999
Q ss_pred EECCCCe--EEEEeecCCCcEEEEEEecC--CCEEEEEeCCCcEEEEecCCce--EEEeeccccceEEEEEEccC-----
Q 009188 303 WDVSSGN--CLHVYEKAGLGLVSCGWHPD--RKWIFSGANDKSICMWELGGKE--LECWKGQRTLKISDLEVTSD----- 371 (540)
Q Consensus 303 wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~----- 371 (540)
||+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||+++.. .......|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 56677789999999999997 8899999999999999997542 12334556678999999997
Q ss_pred --------CCEEEEEecCCeEEEEECCCce------EEEeecCCceeEEEEcCCC---CEEEEEecCCeEEEEEecCCce
Q 009188 372 --------GKQIITMCKESALLLLDREAKV------ERYIEEDQTITSFSLSRDN---KFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 372 --------~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
++.|++++.|++|++||.++.. ..+..|...|.+++|+|++ ++|++++.|+.|++||++....
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 5799999999999999987632 3455688999999999984 8999999999999999976421
Q ss_pred --eeeEe--eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 435 --LVAKY--KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 435 --~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
....+ ..+...+. .+.++|++++|++++.||.|++|+..
T Consensus 242 ~~~~~~~~~~~~~~~v~---~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLW---RASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSSCCSSCEE---EEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecccCCCcEE---EEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 11222 33444433 33448999999999999999999976
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.6e-35 Score=304.78 Aligned_cols=303 Identities=19% Similarity=0.300 Sum_probs=257.8
Q ss_pred CCCCccccCCCcCcCCCCcceEEecccCcCc-EEEEEEec--CCCeEEEEeCCCcEEEEEeecCC-----ceEEEEEecC
Q 009188 203 DRDMSLYTDHQCGRDQIPSRTLQILQGHTDE-VWFLQFSH--NGKYLASSSNDRSAIIWEVDLNG-----GVTLKHKLSG 274 (540)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~~~~sp--~g~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~~~~ 274 (540)
++.+.+|+.... ..+.+....+.+|.+. |++++|+| ++++|++|+.||.|++||+..+. .......+..
T Consensus 38 ~~~v~v~~~~~~---~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 114 (615)
T 1pgu_A 38 GKSAFVRCLDDG---DSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV 114 (615)
T ss_dssp TTEEEEEECCSS---CCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEEC
T ss_pred CCeEEEEECCCC---CCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhc
Confidence 445666653311 1122678899999999 99999999 99999999999999999996331 2356677889
Q ss_pred CCCCeEEEEECcCCCeEEEeeCC----CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC-EEEEEeCCCcEEEEecCC
Q 009188 275 HQKPVSCVSWSSDDQQLLTCGVE----EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK-WIFSGANDKSICMWELGG 349 (540)
Q Consensus 275 h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 349 (540)
|..+|.+++|+|++++|++++.+ +.|++|| +++.+..+..|...|.+++|+|+++ .+++++.||.|++||+.+
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 192 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC
Confidence 99999999999999999999987 6788887 7788899999999999999999998 899999999999999998
Q ss_pred ceEEEeeccccc---eEEEEEEccC-CCEEEEEecCCeEEEEECCCce-EEEe-----ecCCceeEEEEcCCCCEEEEEe
Q 009188 350 KELECWKGQRTL---KISDLEVTSD-GKQIITMCKESALLLLDREAKV-ERYI-----EEDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 350 ~~~~~~~~~~~~---~v~~i~~~~~-~~~l~~~~~d~~i~~~d~~~~~-~~~~-----~~~~~i~~~~~s~~~~~l~~~~ 419 (540)
.........+.. .|.+++|+|+ ++++++++.|+.|++||+.+.. .... .+...|.+++|+ +++++++++
T Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence 888877777777 8999999999 9999999999999999988765 3333 788999999999 999999999
Q ss_pred cCCeEEEEEecCCceeeeEeeCCcC--CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeC
Q 009188 420 LNQEIHLWNIEGEVKLVAKYKGHKR--SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN 497 (540)
Q Consensus 420 ~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 497 (540)
.|+.|++||+++. .....+..+.. ........+ + ++.++++++.||.|++||+.+++.+..+.+|.+.|++++|
T Consensus 272 ~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~- 347 (615)
T 1pgu_A 272 ADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVA-T-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV- 347 (615)
T ss_dssp TTSEEEEEETTTT-EEEEEEECCTTCGGGCEEEEEE-E-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-
T ss_pred CCCcEEEEECCCC-cEEEEEcCCCCcccCceeEEEe-C-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-
Confidence 9999999999977 66777766521 111222333 3 8899999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEecCC
Q 009188 498 PANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 498 ~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
|+ +++++.||.|++|++.
T Consensus 348 ~~----l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 348 NP----LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TT----TEEEETTSCEEETTTT
T ss_pred cC----cEEECCCCeEEEEEch
Confidence 86 8999999999999987
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-34 Score=291.24 Aligned_cols=299 Identities=18% Similarity=0.327 Sum_probs=249.6
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH 275 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h 275 (540)
.++.++.|+.+.+|+.. ..+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+..+ .....+.+|
T Consensus 134 ~l~sgs~dg~i~vwd~~-------~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~h 202 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSI-------NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGH 202 (464)
T ss_dssp EEEEEETTSCEEEEETT-------TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT---EEEEEECCC
T ss_pred EEEEEcCCCcEEEEECC-------CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC---cEEEEECCC
Confidence 34566777888888643 356788899999999999999988 9999999999999999865 567788999
Q ss_pred CCCeEEEEEC--cCCCeEEEeeCCCcEEEEECCCCe-----------------------EEEEeecCCCcEEEEEEecCC
Q 009188 276 QKPVSCVSWS--SDDQQLLTCGVEEAVRRWDVSSGN-----------------------CLHVYEKAGLGLVSCGWHPDR 330 (540)
Q Consensus 276 ~~~v~~l~~s--~~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~ 330 (540)
.+.|.+++|+ +++.++++++.||.|++||+.++. ....+.+|...+.++ ++++
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 280 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG 280 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence 9999999998 578999999999999999998765 255677788888776 5778
Q ss_pred CEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEE
Q 009188 331 KWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSL 408 (540)
Q Consensus 331 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~ 408 (540)
+++++|+.||.|++||+++.........+...+.+++|+|+++.+++++.|+.|++||..+.. .....|...|.++++
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence 899999999999999999888887777788899999999999999999999999999998766 455578899999999
Q ss_pred cCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEe-ecCC
Q 009188 409 SRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGA-LPGH 487 (540)
Q Consensus 409 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h 487 (540)
+ ++++++++.||.|++||+.+.... .... +...... ..+++++.++++|+ ||.|++||+.+++.+.. +.+|
T Consensus 361 ~--~~~l~s~s~dg~v~vwd~~~~~~~-~~~~-~~~~~~~---~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~ 432 (464)
T 3v7d_B 361 S--DKFLVSAAADGSIRGWDANDYSRK-FSYH-HTNLSAI---TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD 432 (464)
T ss_dssp C--SSEEEEEETTSEEEEEETTTCCEE-EEEE-CTTCCCE---EEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT
T ss_pred c--CCEEEEEeCCCcEEEEECCCCcee-eeec-CCCCccE---EEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC
Confidence 7 589999999999999999876333 2222 2222222 23377899999998 89999999999999986 6778
Q ss_pred CCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 488 SGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 488 ~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.+.|.+++|+ +..++++++.||.+.+|-
T Consensus 433 ~~~v~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 433 ADQIWSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CSEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred CCcEEEEEec--CCEEEEEEEeCCeEEEEE
Confidence 9999999997 334777888888766553
No 75
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.6e-35 Score=285.63 Aligned_cols=254 Identities=23% Similarity=0.368 Sum_probs=216.6
Q ss_pred CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCC------------------CcEEEEEEecCCCEEEE
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAG------------------LGLVSCGWHPDRKWIFS 335 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~ 335 (540)
+|.+.|.+++|+|+|++|++|+ ++.+++|++.+++.+..+..+. ..|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 7899999999999888776543 24899999999999999
Q ss_pred EeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcC-CCC
Q 009188 336 GANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSR-DNK 413 (540)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~-~~~ 413 (540)
|+.||.|++||+.+++.......|...|.+++|+|++..+++++.|++|++||+.+.. .....+...+.+++|+| +++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence 9999999999999988888888888899999999999999999999999999998876 44556778899999999 899
Q ss_pred EEEEEecCCeEEEEEecCCceeeeEe-------eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC--------
Q 009188 414 FLLVNLLNQEIHLWNIEGEVKLVAKY-------KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-------- 478 (540)
Q Consensus 414 ~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------- 478 (540)
++++++.|+.|++||+++. ..+..+ .+|...+.. +.+++++.+|++|+.||.|++||+.+.
T Consensus 221 ~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~---v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYS---VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp EEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEE---EEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred EEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEE---EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 9999999999999999876 444444 456665444 344899999999999999999998753
Q ss_pred ----ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc-cCCCce
Q 009188 479 ----DLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD-CHSNGV 533 (540)
Q Consensus 479 ----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~-~~~~~v 533 (540)
.+...+.+|...|.+++|+|++. +|++++.||.|++||+.+++..... .|.+.|
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v 355 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCCCCCE
Confidence 44567789999999999999986 9999999999999999999877653 454444
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-36 Score=320.54 Aligned_cols=316 Identities=11% Similarity=0.181 Sum_probs=243.5
Q ss_pred ccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEE-------
Q 009188 197 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLK------- 269 (540)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~------- 269 (540)
+++.+.|+.+.+|+-.. .+.+..+. |.+.|++++|+|++++|++|+.||+|++||+.........
T Consensus 72 L~S~s~D~~v~lWd~~~-------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYS-------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp EEEEETTCEEEEEETTT-------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred EEEEECcCeEEEEECCC-------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 56667788888886542 34556665 7789999999999999999999999999999754211000
Q ss_pred -EEecCCCCCeEEEEECcC-CCeEEEeeCCCcEEEEECCCCeEEEEeecC------------------CCcEEEEEEecC
Q 009188 270 -HKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVSSGNCLHVYEKA------------------GLGLVSCGWHPD 329 (540)
Q Consensus 270 -~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~ 329 (540)
..+.+|.++|.+++|+|+ +..+++|+.||.| +||+.+++++..+..| ...|.+++|+|+
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 234679999999999996 5789999999999 9999999999888765 467999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCceEEEeec------c------------ccceEEEEE------------------------
Q 009188 330 RKWIFSGANDKSICMWELGGKELECWKG------Q------------RTLKISDLE------------------------ 367 (540)
Q Consensus 330 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~------------~~~~v~~i~------------------------ 367 (540)
|++|++|+.||.|++||+++++...... + +...|.+++
T Consensus 223 g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~ 302 (902)
T 2oaj_A 223 SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN 302 (902)
T ss_dssp SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence 9999999999999999986533211000 0 000111111
Q ss_pred --------------------------------------------------------------------------------
Q 009188 368 -------------------------------------------------------------------------------- 367 (540)
Q Consensus 368 -------------------------------------------------------------------------------- 367 (540)
T Consensus 303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~ 382 (902)
T 2oaj_A 303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP 382 (902)
T ss_dssp CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence
Q ss_pred ------------------------------------------------------------EccCCCEEEEEecCCeEEEE
Q 009188 368 ------------------------------------------------------------VTSDGKQIITMCKESALLLL 387 (540)
Q Consensus 368 ------------------------------------------------------------~~~~~~~l~~~~~d~~i~~~ 387 (540)
|+|+++.+++++.|++|++|
T Consensus 383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlW 462 (902)
T 2oaj_A 383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIY 462 (902)
T ss_dssp TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEE
T ss_pred CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEE
Confidence 13456677788888888888
Q ss_pred ECCCceE------EE-------eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc---------------------
Q 009188 388 DREAKVE------RY-------IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV--------------------- 433 (540)
Q Consensus 388 d~~~~~~------~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------------------- 433 (540)
|..+... .. ..|...|.+++|+|++++|++|+.||+|++||+.+..
T Consensus 463 d~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (902)
T 2oaj_A 463 DASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS 542 (902)
T ss_dssp ESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred ECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence 8765431 10 0566789999999999999999999999999997541
Q ss_pred -----------------------eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeE-----eec
Q 009188 434 -----------------------KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIG-----ALP 485 (540)
Q Consensus 434 -----------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~ 485 (540)
.++..+.+|...+..+. ++|+| +||+|+.|++|++||+.++..+. .+.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva---fSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~ 618 (902)
T 2oaj_A 543 LNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN---NSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREIS 618 (902)
T ss_dssp GGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE---ECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTC
T ss_pred ccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE---ecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhc
Confidence 23566778888765554 48999 99999999999999998877654 343
Q ss_pred -CCCCCeEEEEeC-----CCC--CCEEEEEeCCCcEEEecC---CCCCccc
Q 009188 486 -GHSGAVNCVSWN-----PAN--PHMLASASDDRTIRIWGL---KDLNVKR 525 (540)
Q Consensus 486 -~h~~~v~~l~~~-----~~~--~~~l~s~~~Dg~i~iw~~---~~~~~~~ 525 (540)
+|.+.|++++|+ ||| ..+|++|+.||+|++||+ .+|+...
T Consensus 619 ~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~ 669 (902)
T 2oaj_A 619 GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV 669 (902)
T ss_dssp SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE
T ss_pred cccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE
Confidence 899999999999 886 259999999999999999 7776544
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-35 Score=314.12 Aligned_cols=200 Identities=11% Similarity=0.143 Sum_probs=172.2
Q ss_pred ecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 226 ~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
...||.+.|++++|+|++++||+|+.||+|+||+.... ..... ..|..+|.+++|+| +++|++++.|++|++||+
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~---~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV---EVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC---EEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc---EEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence 34589999999999999999999999999999997643 33333 35888999999999 889999999999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe-----------eccccceEEEEEEccC-CC
Q 009188 306 SSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW-----------KGQRTLKISDLEVTSD-GK 373 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~v~~i~~~~~-~~ 373 (540)
.+++++..+. +...|++++|+|+++++++|+.||.|++||+++..+..+ ...|...|.+++|+|+ +.
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 9999998885 667899999999999999999999999999988765421 2346678999999996 57
Q ss_pred EEEEEecCCeEEEEECCCceE--EEeec------------------CCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 374 QIITMCKESALLLLDREAKVE--RYIEE------------------DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~~--~~~~~------------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
.+++++.|+.| +||+++... .+..+ ...|.+++|+|+|++|++++.||.|++||++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 89999999999 999998762 22222 367999999999999999999999999999765
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-34 Score=278.51 Aligned_cols=254 Identities=16% Similarity=0.272 Sum_probs=213.0
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC--CCeEEEeeCCCc
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD--DQQLLTCGVEEA 299 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~ 299 (540)
+++..+.+|.+.|++++|+|++++||+|+.||.|+||++... .......+.+|...|++++|+++ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 356778999999999999999999999999999999999732 33667788999999999999977 999999999999
Q ss_pred EEEEECCCCe--EEEEeecCCCcEEEEEEecC--CCEEEEEeCCCcEEEEecCCc--eEEEeeccccceEEEEEEcc---
Q 009188 300 VRRWDVSSGN--CLHVYEKAGLGLVSCGWHPD--RKWIFSGANDKSICMWELGGK--ELECWKGQRTLKISDLEVTS--- 370 (540)
Q Consensus 300 i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~--- 370 (540)
|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||++.. ........+...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999997 77788889999999999999 999999999999999999765 23334455667899999999
Q ss_pred ----------CCCEEEEEecCCeEEEEECCCce------EEEeecCCceeEEEEcCC---CCEEEEEecCCeEEEEEecC
Q 009188 371 ----------DGKQIITMCKESALLLLDREAKV------ERYIEEDQTITSFSLSRD---NKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 371 ----------~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~ 431 (540)
++..+++++.|+.|++||+++.. .....|...|.+++|+|+ ++++++++.||.|++||++.
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999987642 344568899999999999 89999999999999999987
Q ss_pred Cce----eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc
Q 009188 432 EVK----LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 432 ~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
... .......+... +..+.++|++.+|++++.||.|++||+..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~---v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDV---LWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TTSCCEEEESSSSCCSSC---EEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCccceeeeeccccCCCc---EEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 522 11122224444 3344458999999999999999999988544
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-33 Score=304.21 Aligned_cols=307 Identities=12% Similarity=0.163 Sum_probs=251.8
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
+....++.+.+|+. .....+..+.+|.+.|++++|+|+|++|++|+.||.|++||+..+ .....+.+|.+
T Consensus 29 a~~~~~g~v~iwd~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---~~~~~~~~~~~ 98 (814)
T 3mkq_A 29 LTTLYSGRVEIWNY-------ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHPD 98 (814)
T ss_dssp EEEETTSEEEEEET-------TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred EEEeCCCEEEEEEC-------CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCC
Confidence 34445566777753 235678889999999999999999999999999999999999866 45667889999
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEE-E
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG-NCLHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELE-C 354 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-~ 354 (540)
.|++++|+|++++|++++.||.|++||+.++ .....+..|...|.+++|+| +++.|++++.||.|++||+.+.... .
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 178 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE
Confidence 9999999999999999999999999999987 77888889999999999999 8899999999999999999765443 3
Q ss_pred eeccccceEEEEEEcc--CCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 355 WKGQRTLKISDLEVTS--DGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
....+...+.+++|+| ++..+++++.+|.|++||..+.. .....+...|.+++|+|+++++++++.||.|++||+.
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 4444446899999999 99999999999999999998866 4445688899999999999999999999999999998
Q ss_pred CCceeeeEeeCCcCCeeEEEeeeccCCCc--EEEEeeCCCcEEEEECCCCceeE--------------------------
Q 009188 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQA--FIASGSEDSQVYIWHRASCDLIG-------------------------- 482 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~s~dg~i~iwd~~~~~~~~-------------------------- 482 (540)
+. .....+..+...+..+. ++|++. +++++ .++.+.+|++..+....
T Consensus 259 ~~-~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 333 (814)
T 3mkq_A 259 TY-KVEKTLNVGLERSWCIA---THPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVI 333 (814)
T ss_dssp TC-SEEEEECCSSSSEEEEE---ECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEEC
T ss_pred CC-cEEEEeecCCCcEEEEE---EccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeec
Confidence 87 67777877777655443 367776 45554 46668888865432211
Q ss_pred -----------------eecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 483 -----------------ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 483 -----------------~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
.+..+...+.+++|+|++. ++++++ ||.+.+|++...
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 334 RGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-FVTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp CSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-EEEEEE-TTEEEEEETTTT
T ss_pred ccccccccCccceeeeecCCCCccCCceeEECCCCC-EEEEec-CCEEEEEECccc
Confidence 1123455689999999996 888887 899999998654
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-33 Score=296.54 Aligned_cols=271 Identities=20% Similarity=0.317 Sum_probs=219.9
Q ss_pred ccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC
Q 009188 199 HNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278 (540)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 278 (540)
+++.|+.+.+|+.... ..........+.+|.+.|++++|+|+|++|++|+.||+|+|||+..+ .....+.+|...
T Consensus 400 s~s~D~~i~~W~~~~~--~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~ 474 (694)
T 3dm0_A 400 SASRDKSIILWKLTKD--DKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKD 474 (694)
T ss_dssp EEETTSEEEEEECCCS--TTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSC
T ss_pred EEeCCCcEEEEEccCC--CcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cceeEEeCCCCC
Confidence 3445555666653321 11223456789999999999999999999999999999999999765 566778899999
Q ss_pred eEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEe---ecCCCcEEEEEEecCC--CEEEEEeCCCcEEEEecCCceEE
Q 009188 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY---EKAGLGLVSCGWHPDR--KWIFSGANDKSICMWELGGKELE 353 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 353 (540)
|.+++|+|++++|++|+.|++|++||+......... .+|...|.+++|+|++ ..+++|+.||.|++||+++....
T Consensus 475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 999999999999999999999999998655443332 3577889999999986 58999999999999999988888
Q ss_pred EeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 354 CWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 354 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
.....|...|.+++|+|+++++++++.|+.|++||+.+.. .....+...+.+++|+|++.++++++ ++.|++||+++.
T Consensus 555 ~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 8788888899999999999999999999999999998876 44455677899999999998877765 667999999887
Q ss_pred ceeeeEeeCCcC----------------CeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 433 VKLVAKYKGHKR----------------SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 433 ~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
..+..+..+.. ....+..+.++|+|++|++|+.||.|++||+.
T Consensus 634 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 634 -SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 55555543211 11113344559999999999999999999975
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-34 Score=286.14 Aligned_cols=286 Identities=15% Similarity=0.254 Sum_probs=230.4
Q ss_pred cEEEEEEecCCCeEE-EEeCCCcEEEEEeecCCce-EEEEEecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCCC-
Q 009188 233 EVWFLQFSHNGKYLA-SSSNDRSAIIWEVDLNGGV-TLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSSG- 308 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~-tg~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~- 308 (540)
....++++|+...++ +|+.||.|+||++...+.. .....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344688888775444 5788999999998643211 12335678999999999999 9999999999999999999988
Q ss_pred ------eEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceEEEee--ccccceEEEEEEccCCCEEEEEe
Q 009188 309 ------NCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKELECWK--GQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 309 ------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
+.+..+.+|...|.+++|+|++ +.|++++.||.|++||++++...... ..+...|.+++|+|++..+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 6678889999999999999998 69999999999999999988777666 67778999999999999999999
Q ss_pred cCCeEEEEECCCce--EEE-eecCCc-eeEEEEcCCCCEEEEE---ecCCeEEEEEecCCceeeeEee-CCcCCeeEEEe
Q 009188 380 KESALLLLDREAKV--ERY-IEEDQT-ITSFSLSRDNKFLLVN---LLNQEIHLWNIEGEVKLVAKYK-GHKRSRFVIRS 451 (540)
Q Consensus 380 ~d~~i~~~d~~~~~--~~~-~~~~~~-i~~~~~s~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~ 451 (540)
.|+.|++||+++.. ... ..+... +.++.|+|++++++++ +.++.|++||+++...+..... .+...+. .
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~---~ 272 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL---L 272 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE---E
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee---E
Confidence 99999999998876 222 345544 8999999999999999 7899999999987644343333 3344433 3
Q ss_pred eeccCCCcEEE-EeeCCCcEEEEECCCCce-eEeecC--CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 452 CFGGLEQAFIA-SGSEDSQVYIWHRASCDL-IGALPG--HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 452 ~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
+.+++++.+++ +|+.||.|++||+.+++. +..+.. |...|.+++|+|++. ++++ .|+.+++|++.++++.
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~-~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRG-LEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGG-SCGG--GTEEEEEEEEETTEEE
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccc-ccee--cceeEEEEEcCCCcEE
Confidence 34488998886 556799999999999884 444443 568999999999985 5553 5779999999886553
No 82
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-32 Score=265.05 Aligned_cols=254 Identities=17% Similarity=0.297 Sum_probs=221.1
Q ss_pred CceEEEEEecCCCCCeEEEEECcC-CCeEEEeeCCCcEEEEECCCC-----eEEEEeecCCCcEEEEEEecCCCEEEEEe
Q 009188 264 GGVTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVSSG-----NCLHVYEKAGLGLVSCGWHPDRKWIFSGA 337 (540)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 337 (540)
....+..++++|.+.|++|+|+|+ +++|+||+.|++|+|||+.++ .+...+.+|...|.+++|+|++++|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 344667789999999999999997 689999999999999998764 35677889999999999999999999999
Q ss_pred CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceE---EEeecCCceeEEEEcCCC--
Q 009188 338 NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE---RYIEEDQTITSFSLSRDN-- 412 (540)
Q Consensus 338 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~i~~~~~s~~~-- 412 (540)
.|+.|++|+............+...+....+++++..+++++.|+.+++||...... ....+...+..++|++++
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 999999999988887777777777899999999999999999999999999887653 234567889999998865
Q ss_pred CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeE
Q 009188 413 KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVN 492 (540)
Q Consensus 413 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 492 (540)
.++++++.|+.|++||+++. .....+.+|...+..+. ++|++++|++|+.||.|++||+.+++.+..+.. ...|.
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~---~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVT---VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIIN 260 (340)
T ss_dssp CEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEE---ECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEE
T ss_pred cEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEE---ECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEE
Confidence 57889999999999999987 78888888988755543 489999999999999999999999999998885 46899
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 493 CVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 493 ~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
+++|+|++ .+++++.|+.|++||++++...
T Consensus 261 ~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 261 ALCFSPNR--YWLCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp EEEECSSS--SEEEEEETTEEEEEETTTTEEE
T ss_pred eeecCCCC--ceeeccCCCEEEEEECCCCeEE
Confidence 99999977 4667788999999999887554
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-33 Score=272.92 Aligned_cols=249 Identities=11% Similarity=0.204 Sum_probs=214.3
Q ss_pred EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC--CCeEEEEeecCCCcEEEEEEecC--CCEEEEEeCCCcEEE
Q 009188 269 KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS--SGNCLHVYEKAGLGLVSCGWHPD--RKWIFSGANDKSICM 344 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 344 (540)
...+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+..|...|.+++|+++ +++|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45578999999999999999999999999999999998 56778888899999999999987 899999999999999
Q ss_pred EecCCce--EEEeeccccceEEEEEEccC--CCEEEEEecCCeEEEEECCCce----EEEeecCCceeEEEEcC------
Q 009188 345 WELGGKE--LECWKGQRTLKISDLEVTSD--GKQIITMCKESALLLLDREAKV----ERYIEEDQTITSFSLSR------ 410 (540)
Q Consensus 345 wd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~------ 410 (540)
||+.++. .......+...|.+++|+|+ +..+++++.|+.|++||+.... .....+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9998775 45555667779999999999 9999999999999999998762 45567889999999999
Q ss_pred -------CCCEEEEEecCCeEEEEEecCCc---eeeeEeeCCcCCeeEEEeeeccCC---CcEEEEeeCCCcEEEEECCC
Q 009188 411 -------DNKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGHKRSRFVIRSCFGGLE---QAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 411 -------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~s~s~dg~i~iwd~~~ 477 (540)
++.++++++.||.|++||++... .....+.+|...+..+. ++|+ +.++++++.||.|++||+.+
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~---~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA---WSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE---ECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE---ECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998653 34556777877755443 4788 89999999999999999988
Q ss_pred Cc-----eeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 478 CD-----LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 478 ~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
+. .+.....|...|++++|+|++. +|++++.||.|++|++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEET
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCCC
Confidence 64 2223334889999999999996 8999999999999999853
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=264.54 Aligned_cols=255 Identities=13% Similarity=0.241 Sum_probs=225.8
Q ss_pred EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 009188 267 TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 346 (540)
.....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEeeccccceEEEEEEccCCCEEEEEecC-----CeEEEEECCCce-------------EEEeecCC--ceeEE
Q 009188 347 LGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE-----SALLLLDREAKV-------------ERYIEEDQ--TITSF 406 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~~d~~~~~-------------~~~~~~~~--~i~~~ 406 (540)
+.++....... +...+.+++|+|++..+++++.+ +.+.+||..... .....+.. .+.++
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 98776665555 55689999999999999999999 999999986542 22333444 89999
Q ss_pred EEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC
Q 009188 407 SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG 486 (540)
Q Consensus 407 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 486 (540)
+|+|+++++++++.+|.|++||+++.......+..|...+..+ .++|++.+|++++.||.|++||+.+++.+..+.
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM---QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE---EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE---EECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence 9999999999999999999999998558888888888775544 348899999999999999999999999998888
Q ss_pred CCCCeEEEEeCCCCCCEEEEEeCCC--------------cEEEecCCCCCccccc
Q 009188 487 HSGAVNCVSWNPANPHMLASASDDR--------------TIRIWGLKDLNVKRKD 527 (540)
Q Consensus 487 h~~~v~~l~~~~~~~~~l~s~~~Dg--------------~i~iw~~~~~~~~~~~ 527 (540)
+...+.+++|+|++. ++++++.++ .|++||+.+++.....
T Consensus 258 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 258 TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp CSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 788999999999996 888888888 8999999998877653
No 85
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=288.69 Aligned_cols=275 Identities=9% Similarity=0.039 Sum_probs=209.3
Q ss_pred ceEEecccCcCcEEEEEEecCC---------CeEEE-------------------EeCCCcEEEEEeecCCce-EEEEEe
Q 009188 222 RTLQILQGHTDEVWFLQFSHNG---------KYLAS-------------------SSNDRSAIIWEVDLNGGV-TLKHKL 272 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g---------~~l~t-------------------g~~dg~i~iwd~~~~~~~-~~~~~~ 272 (540)
+....+. +.+.|++++|+|++ ++||+ ++.|++|+||++..+... .....+
T Consensus 125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l 203 (524)
T 2j04_B 125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI 203 (524)
T ss_dssp SCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE
T ss_pred cceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE
Confidence 3333444 57788888888876 56665 557889999999865421 223446
Q ss_pred cCCCCCeEEEEECcC------CCeEEEeeCCCcEEEEECCCCeE-----------EEEeecCCCcEEEEEEecCCCEEEE
Q 009188 273 SGHQKPVSCVSWSSD------DQQLLTCGVEEAVRRWDVSSGNC-----------LHVYEKAGLGLVSCGWHPDRKWIFS 335 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~------~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~ 335 (540)
.+|.+.|.+++|+|+ +.+||+++.||+|++||+.++.. ...+.+|...|++++|++++ .|++
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence 678899999999996 57999999999999999987642 23677888999999999864 8999
Q ss_pred EeCCCcEEEEecCCc-eEEEeeccccceEEEE--EEccCC-CEEEEEecCCeEEEEECCCce--EEEeecC--CceeEEE
Q 009188 336 GANDKSICMWELGGK-ELECWKGQRTLKISDL--EVTSDG-KQIITMCKESALLLLDREAKV--ERYIEED--QTITSFS 407 (540)
Q Consensus 336 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i--~~~~~~-~~l~~~~~d~~i~~~d~~~~~--~~~~~~~--~~i~~~~ 407 (540)
|+.||+|++||++++ ........|...|.++ ++++++ ..|++++.|++|++||+++.. .....+. ..+.+++
T Consensus 283 gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~ 362 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV 362 (524)
T ss_dssp EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE
T ss_pred EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceE
Confidence 999999999999864 3333455677799999 578888 899999999999999998754 2333343 3578999
Q ss_pred EcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC-
Q 009188 408 LSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG- 486 (540)
Q Consensus 408 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~- 486 (540)
|+|+++.+++++.|+.|++||++.. .....+.+|...+..+. ++|++.+|++|+.||+|++||...+ .+..+..
T Consensus 363 fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~sva---~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~ 437 (524)
T 2j04_B 363 YCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVSRETTITAIG---VSRLHPMVLAGSADGSLIITNAARR-LLHGIKNS 437 (524)
T ss_dssp EETTTTEEEEECSSSEEEEEETTCT-TCCEEEEECSSCEEEEE---CCSSCCBCEEEETTTEEECCBSCSS-TTTCC---
T ss_pred eCCCcCeEEEeCCCCcEEEEECccc-ccceeeecCCCceEEEE---eCCCCCeEEEEECCCEEEEEechHh-hccccccC
Confidence 9999999999999999999999886 55567778888755543 4899999999999999999998654 3222211
Q ss_pred ----CCCCeEEEEeCCCCCCEE
Q 009188 487 ----HSGAVNCVSWNPANPHML 504 (540)
Q Consensus 487 ----h~~~v~~l~~~~~~~~~l 504 (540)
+...|.+++|+|++. .+
T Consensus 438 ~~~~~~~~v~~v~~sp~g~-~~ 458 (524)
T 2j04_B 438 SATQKSLRLWKWDYSIKDD-KY 458 (524)
T ss_dssp ---CCCCEEEECBCCSSSC-EE
T ss_pred ccceeeeEEEEeccCCCCC-eE
Confidence 112578999999986 44
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-33 Score=272.85 Aligned_cols=273 Identities=14% Similarity=0.261 Sum_probs=220.8
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEeccc-CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQG-HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~ 276 (540)
+..+.++.+.+|+.. ..+....+.. |.+.|++++|+|++++|++|+.||.|++||+..+ .....+.+|.
T Consensus 107 ~~~~~d~~v~lw~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 176 (401)
T 4aez_A 107 VAVALERNVYVWNAD-------SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQ 176 (401)
T ss_dssp EEEEETTEEEEEETT-------TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCS
T ss_pred EEEECCCeEEEeeCC-------CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEEEEecCCC
Confidence 344455556666533 2344444444 8999999999999999999999999999999765 4567788999
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECC-CCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVS-SGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW 355 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 355 (540)
..|.+++| ++.++++++.||.|++||+. .+.....+..|...|.+++|+|++++|++|+.||.|++||+++......
T Consensus 177 ~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 254 (401)
T 4aez_A 177 ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254 (401)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE
T ss_pred CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE
Confidence 99999999 46799999999999999998 5677888999999999999999999999999999999999998777777
Q ss_pred eccccceEEEEEEccCCCE-EEEEe--cCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEe--cCCeEEEEEe
Q 009188 356 KGQRTLKISDLEVTSDGKQ-IITMC--KESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNL--LNQEIHLWNI 429 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~-l~~~~--~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~ 429 (540)
...+...|.+++|+|++.. +++++ .|+.|++||..+.. .....+...+.+++|+|+++++++++ .||.|++||+
T Consensus 255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 7777789999999998754 45544 69999999998766 55566788999999999999999954 8999999999
Q ss_pred cCCc-eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec
Q 009188 430 EGEV-KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP 485 (540)
Q Consensus 430 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 485 (540)
.+.. .....+.+|...+..+. ++|++.+|++++.||.|++||+.+++.+....
T Consensus 335 ~~~~~~~~~~~~~h~~~v~~~~---~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 335 SSSGLTKQVDIPAHDTRVLYSA---LSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ETTEEEEEEEEECCSSCCCEEE---ECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCccceeEEEecCCCCCEEEEE---ECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 8752 23334667777655543 38899999999999999999999988776543
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.4e-33 Score=276.26 Aligned_cols=251 Identities=16% Similarity=0.322 Sum_probs=215.8
Q ss_pred EEecCCCCCeEEEEECcC-CCeEEEeeCCCcEEEEECCC----------CeEEEEeecCCCcEEEEEEecCCC-EEEEEe
Q 009188 270 HKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVSS----------GNCLHVYEKAGLGLVSCGWHPDRK-WIFSGA 337 (540)
Q Consensus 270 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 337 (540)
.....|.+.|++++|+|+ +.+|++++.+|.|++||+.+ ......+..|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 68999999999999999986 577888889999999999999988 999999
Q ss_pred CCCcEEEEecCCceE-------EEeeccccceEEEEEEcc-CCCEEEEEecCCeEEEEECCCc---e--EEEeecCCcee
Q 009188 338 NDKSICMWELGGKEL-------ECWKGQRTLKISDLEVTS-DGKQIITMCKESALLLLDREAK---V--ERYIEEDQTIT 404 (540)
Q Consensus 338 ~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~~d~~~~---~--~~~~~~~~~i~ 404 (540)
.||.|++||+..... ......+...|.+++|+| ++..+++++.++.|++||+++. . .....|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999976211 233446667899999999 7789999999999999999865 2 45557889999
Q ss_pred EEEEcCCCC-EEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCC-cEEEEeeCCCcEEEEECCC-----
Q 009188 405 SFSLSRDNK-FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQ-AFIASGSEDSQVYIWHRAS----- 477 (540)
Q Consensus 405 ~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~s~dg~i~iwd~~~----- 477 (540)
+++|+|++. ++++|+.||.|++||++....++..+..|...+..+.+ +|++ .++++++.||.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~---sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW---SPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE---CSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE---CCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 999999987 68899999999999999865778888888887555443 7777 5799999999999999987
Q ss_pred ---------CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCc
Q 009188 478 ---------CDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 478 ---------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
.+++..+.+|...|++++|+|+++.++++++.||.|++|++.+...
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 3677888899999999999999976999999999999999986543
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=275.94 Aligned_cols=284 Identities=12% Similarity=0.087 Sum_probs=226.5
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec-------------------------------------
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS------------------------------------- 273 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------- 273 (540)
..++.+++|+|+|++|++++ ++.|++||+.++........+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 35788999999999766664 6799999998775222333333
Q ss_pred -----------------CCCCCeEEEEECcCCCeE-EEeeCCCcEEEEECC--CCeEEEEee--cCCCcEEEEEEecCCC
Q 009188 274 -----------------GHQKPVSCVSWSSDDQQL-LTCGVEEAVRRWDVS--SGNCLHVYE--KAGLGLVSCGWHPDRK 331 (540)
Q Consensus 274 -----------------~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 331 (540)
+|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+. .+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 344579999999999996 889999999999999 888888876 5678899999999999
Q ss_pred EEEEEeCCCcEEEEecCCceEEE----eeccccceEEEEEEccC---CCEEEEEecCCeEEEEECCCce--EE-EeecCC
Q 009188 332 WIFSGANDKSICMWELGGKELEC----WKGQRTLKISDLEVTSD---GKQIITMCKESALLLLDREAKV--ER-YIEEDQ 401 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~i~~~d~~~~~--~~-~~~~~~ 401 (540)
+|++|+.+|.|++|++.+..... ....+...|.+++|+|+ ++++++++.|+.|++||+.+.. .. ...|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999997655432 34456678999999999 9999999999999999998765 23 346889
Q ss_pred ceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc----------------------CCeeEEEeeeccCCCc
Q 009188 402 TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK----------------------RSRFVIRSCFGGLEQA 459 (540)
Q Consensus 402 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------------------~~~~~i~~~~~~~~~~ 459 (540)
.|.+++|+ ++++|++++.|+.|++||++++ ..+..+..+. .....+..+.++++++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 99999999 9999999999999999999887 5555554321 1112233444578999
Q ss_pred EEEEee-CCCcEEEEEC--CCC---ceeEeecCCCCCeEEEEeCCCCCCEEEEEeC-------CCcEEEecCCC
Q 009188 460 FIASGS-EDSQVYIWHR--ASC---DLIGALPGHSGAVNCVSWNPANPHMLASASD-------DRTIRIWGLKD 520 (540)
Q Consensus 460 ~l~s~s-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-------Dg~i~iw~~~~ 520 (540)
++++++ .|+.|++|++ .++ +.+..+.+| +.|.+++|+|++ ++++.+. +..|.+|.+..
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEc
Confidence 999998 8999999999 565 667788888 889999999954 5555443 55688887653
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.2e-33 Score=275.13 Aligned_cols=278 Identities=11% Similarity=0.120 Sum_probs=228.3
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecC----C---CeEEEEeCCCcEEEEEeecCCc--e
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHN----G---KYLASSSNDRSAIIWEVDLNGG--V 266 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~----g---~~l~tg~~dg~i~iwd~~~~~~--~ 266 (540)
.++..+.++.+.+|+..... ...+...+..+.+|...|++++|+|+ | ++|++|+.||.|++|++..+.. .
T Consensus 28 ~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 28 FTVSCSGDGYLKVWDNKLLD-NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp EEEEEETTSEEEEEESBCCT-TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred eEEEEcCCCEEEEEECCCcc-cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 45667788888898754322 12234467888899999999999999 9 9999999999999999987642 1
Q ss_pred EEEEEecCC-----CCCeEEEEEC----cCCCe-EEEeeCCCcEEEEECCC------CeEEE-----Eee-------cCC
Q 009188 267 TLKHKLSGH-----QKPVSCVSWS----SDDQQ-LLTCGVEEAVRRWDVSS------GNCLH-----VYE-------KAG 318 (540)
Q Consensus 267 ~~~~~~~~h-----~~~v~~l~~s----~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~~-------~~~ 318 (540)
.....+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ++.+. .+. .|.
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence 115567778 5999999999 99999 99999999999999988 66555 663 478
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc---c---cceEEEEEEccCCCEEEEEecC---CeEEEEEC
Q 009188 319 LGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ---R---TLKISDLEVTSDGKQIITMCKE---SALLLLDR 389 (540)
Q Consensus 319 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~i~~~~~~~~l~~~~~d---~~i~~~d~ 389 (540)
..|.+++|+|++ .+++++.||.|++||+++......... + ...+.+++|+|++.++++++.| +.|++||.
T Consensus 187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 899999999999 999999999999999988777666665 6 7799999999999999999999 99999999
Q ss_pred CCce--EEEee-------------cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee------CC------
Q 009188 390 EAKV--ERYIE-------------EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK------GH------ 442 (540)
Q Consensus 390 ~~~~--~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~------ 442 (540)
.+.. ..... +...|.+++|+|++++|++++.||.|++||+++. ..+..+. +|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1sq9_A 266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILA 344 (397)
T ss_dssp TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCC
T ss_pred CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhc
Confidence 8765 34444 7899999999999999999999999999999887 7777787 66
Q ss_pred ---------cCCeeEEEeeeccCCC----------cEEEEeeCCCcEEEEECCCCc
Q 009188 443 ---------KRSRFVIRSCFGGLEQ----------AFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 443 ---------~~~~~~i~~~~~~~~~----------~~l~s~s~dg~i~iwd~~~~~ 479 (540)
...+..+ .+++++ .+|++++.||.|++||+.+|+
T Consensus 345 g~~~~~~~~~~~v~~~---~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFDV---KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp BCTTSCBCSSCCEEEE---EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccccCCceeEE---EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 5554443 347787 799999999999999998764
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-32 Score=256.52 Aligned_cols=254 Identities=18% Similarity=0.230 Sum_probs=220.4
Q ss_pred CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEE
Q 009188 264 GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSIC 343 (540)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 343 (540)
...+....+.+|.+.|++++| +++++|++++.||.|++||+.+++....+..|...|.+++|+|+++++++++.||.|+
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 344677889999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCc---eEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcC-CCCEEEEEe
Q 009188 344 MWELGGK---ELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSR-DNKFLLVNL 419 (540)
Q Consensus 344 iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~ 419 (540)
+|++... ........+...+.+++| ++..+++++.|+.|++||..........+...+.+++++| +++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 9998542 334445567778999999 6789999999999999995555577778899999999998 899999999
Q ss_pred cCCeEEEEEecCCceeeeEeeC-CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCC
Q 009188 420 LNQEIHLWNIEGEVKLVAKYKG-HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNP 498 (540)
Q Consensus 420 ~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 498 (540)
.||.|++||.. .....+.. +...+..+ .+++++. +++++.||.|++||+.+++.+..+.+|.+.|++++|+|
T Consensus 163 ~d~~i~i~d~~---~~~~~~~~~~~~~i~~~---~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 235 (313)
T 3odt_A 163 ADKTIKLWQND---KVIKTFSGIHNDVVRHL---AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP 235 (313)
T ss_dssp TTSCEEEEETT---EEEEEECSSCSSCEEEE---EEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred CCCCEEEEecC---ceEEEEeccCcccEEEE---EEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec
Confidence 99999999933 55666666 66654444 3367777 89999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEecCCCCCccccccC
Q 009188 499 ANPHMLASASDDRTIRIWGLKDLNVKRKDCH 529 (540)
Q Consensus 499 ~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~ 529 (540)
++ .+++++.||.|++||+.+++.......
T Consensus 236 ~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~ 264 (313)
T 3odt_A 236 NG--DIVSCGEDRTVRIWSKENGSLKQVITL 264 (313)
T ss_dssp TS--CEEEEETTSEEEEECTTTCCEEEEEEC
T ss_pred CC--CEEEEecCCEEEEEECCCCceeEEEec
Confidence 88 488999999999999999988766433
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-32 Score=267.50 Aligned_cols=255 Identities=11% Similarity=0.193 Sum_probs=213.4
Q ss_pred EEEEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCCCeEEEEee--cCCCcEEEEEEec-CCCEEEEEeCCCcE
Q 009188 267 TLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGNCLHVYE--KAGLGLVSCGWHP-DRKWIFSGANDKSI 342 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i 342 (540)
.....+.+|.+.|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.||.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 4455678999999999999999 999999999999999999988877775 5899999999999 78999999999999
Q ss_pred EEEecCCceEEEeeccc--cceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCC-EEEEE
Q 009188 343 CMWELGGKELECWKGQR--TLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNK-FLLVN 418 (540)
Q Consensus 343 ~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~-~l~~~ 418 (540)
++||+++.......... ...+.+++|+|+++.+++++.|+.|++||++... .....|...|.+++|+|+++ +++++
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence 99999986666555443 3679999999999999999999999999997655 55567899999999999998 99999
Q ss_pred ecCCeEEEEEecCC---ceeeeEeeCCcCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECCCCceeEeecCCC------
Q 009188 419 LLNQEIHLWNIEGE---VKLVAKYKGHKRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRASCDLIGALPGHS------ 488 (540)
Q Consensus 419 ~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------ 488 (540)
+.|+.|++||++.. ...+..+ +|...+..+ .++| ++.+|++++.||.|++||+.+++....+.+|.
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~---~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAA---YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH 299 (383)
T ss_dssp ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEE---EECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEE---EEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence 99999999999862 2445545 566654443 3488 99999999999999999999988877766543
Q ss_pred -----------CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 489 -----------GAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 489 -----------~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
+.+..++|+|++. + +++.||.|++||+.+++......
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred ccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCCCceeeeec
Confidence 3445577777775 3 78899999999999998876543
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-34 Score=283.18 Aligned_cols=277 Identities=13% Similarity=0.253 Sum_probs=220.2
Q ss_pred EEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEe-cCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCC---Ce---
Q 009188 238 QFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKL-SGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSS---GN--- 309 (540)
Q Consensus 238 ~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~---~~--- 309 (540)
.|+|++..+++++ .|+.. + .....+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g---~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 103 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-G---KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS 103 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-C---CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS
T ss_pred hcCCccccccccc------ccccc-c---eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc
Confidence 3677888777765 37643 2 355666 89999999999999 999999999999999999876 43
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC---CceEEEeecc------------ccceEEEEE--EccCC
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG---GKELECWKGQ------------RTLKISDLE--VTSDG 372 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~i~--~~~~~ 372 (540)
....+ .|...|.+++|+|++++|++|+.||.|++||+. .+........ +...+.++. +++++
T Consensus 104 ~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 104 SSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp CSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred eeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 23333 588999999999999999999999999999994 2222221111 333556665 55789
Q ss_pred CEEEEEecCCeEEEEECCCce--EEEee--cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee-CCcCCee
Q 009188 373 KQIITMCKESALLLLDREAKV--ERYIE--EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK-GHKRSRF 447 (540)
Q Consensus 373 ~~l~~~~~d~~i~~~d~~~~~--~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~ 447 (540)
..+++++.|+.|++||+++.. ..... |...|++++|+|+++++++++.||.|++||++.. ..+..+. .+...+.
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceE
Confidence 999999999999999998866 33333 7889999999999999999999999999999986 6777665 5555555
Q ss_pred EEEee-eccCCCcEEEEeeCCCcEEEEECCCCceeEeecCC--------------------------CCCeEEEEeCCCC
Q 009188 448 VIRSC-FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGH--------------------------SGAVNCVSWNPAN 500 (540)
Q Consensus 448 ~i~~~-~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--------------------------~~~v~~l~~~~~~ 500 (540)
.+.+. .+++++.++++|+.||.|++||+.+++.+..+.+| ...|++++|+ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 55443 45678999999999999999999999988777644 4557788888 55
Q ss_pred CCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 501 PHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 501 ~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
.+|++++.||.|++||+.+++......
T Consensus 341 -~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 341 -KILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp -EEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred -eEEEecCCCCeEEEEECCCcccceEEe
Confidence 499999999999999999998776543
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=295.23 Aligned_cols=267 Identities=17% Similarity=0.294 Sum_probs=209.5
Q ss_pred EEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcC--CCeEEEeeCCCcEE
Q 009188 224 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSD--DQQLLTCGVEEAVR 301 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~ 301 (540)
+.++.+|.+.|++++|+|+|++|++|+.||.|+|||+..+ .......+.+|.++|++++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4578899999999999999999999999999999999732 34667788999999999999988 99999999999999
Q ss_pred EEECCCCe--EEEEeecCCCcEEEEEEecC--CCEEEEEeCCCcEEEEecCCce--EEEeeccccceEEEEEEccCCCEE
Q 009188 302 RWDVSSGN--CLHVYEKAGLGLVSCGWHPD--RKWIFSGANDKSICMWELGGKE--LECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 302 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
+||+.+++ ....+..|...|.+++|+|+ ++.+++|+.||.|++||+++.. .......+...|.+++|+|.....
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77788889999999999999 9999999999999999997642 112222333445555555431100
Q ss_pred EEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc---eeeeEeeCCcCCeeEEEee
Q 009188 376 ITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGHKRSRFVIRSC 452 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~i~~~ 452 (540)
. ......+++.++++|+.||.|++||+++.. .....+.+|...+..+.
T Consensus 161 ~---------------------------~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~-- 211 (753)
T 3jro_A 161 D---------------------------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-- 211 (753)
T ss_dssp ---------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE--
T ss_pred c---------------------------cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE--
Confidence 0 000113368899999999999999998653 45566778887755544
Q ss_pred eccCC---CcEEEEeeCCCcEEEEECCCCc-----eeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 453 FGGLE---QAFIASGSEDSQVYIWHRASCD-----LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 453 ~~~~~---~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
++|+ +.++++|+.||.|++||+.++. .+....+|.+.|++++|+|++. ++++++.||.|++|++.++.
T Consensus 212 -~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 212 -WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp -ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCSSS
T ss_pred -eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCCCC
Confidence 3778 8999999999999999998874 3344456889999999999996 89999999999999998643
No 94
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-32 Score=266.60 Aligned_cols=244 Identities=14% Similarity=0.161 Sum_probs=213.3
Q ss_pred ecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC
Q 009188 272 LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN--CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 272 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 349 (540)
+..|.++|.+++|+|++++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44689999999999999999999999999999999987 8889999999999999999999999999999999999987
Q ss_pred ceEEEe--eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-----EE-EeecCCceeEEEEcCCCCEEEEEecC
Q 009188 350 KELECW--KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-----ER-YIEEDQTITSFSLSRDNKFLLVNLLN 421 (540)
Q Consensus 350 ~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~-~~~~~~~i~~~~~s~~~~~l~~~~~d 421 (540)
+..... ...+...+.+++|+|+++.+++++.++.+++||..... .. ...+...|.+++|+|+++++++++.|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 764332 24566789999999999999999999999999987753 12 23468899999999999999999999
Q ss_pred CeEEEEEecC-----------------CceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee
Q 009188 422 QEIHLWNIEG-----------------EVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 422 g~i~i~d~~~-----------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 484 (540)
|.|++||++. ....+..+..|...+..+ .++|++.+|++++.||.|++||+.+++.+..+
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV---CFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE---EECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE---EECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 9999999641 226677777777765444 34889999999999999999999999999999
Q ss_pred cCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 485 PGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 485 ~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
..|...|.+++|+|++. +++++ .||.|++|++.+
T Consensus 241 ~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 ASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred ccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence 99999999999999985 66666 999999999988
No 95
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=275.79 Aligned_cols=261 Identities=10% Similarity=0.038 Sum_probs=207.6
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG 308 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 308 (540)
.-...|.+++|||||+++||++.|++|+ |.... ..+.+|...|.+++|+|+| .++.+.+|+....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~------~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA------KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC------SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc------ceecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 3468999999999999999999999999 64433 2347999999999999998 4665555554322
Q ss_pred eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccc-----eEEEEEEccCCCEEEEEecCCe
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTL-----KISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
. ...+ .+...|.+++|+|+|..|++++.||.|++||..+ +..... +.. .+.+++|+|||++|++|+.||+
T Consensus 78 ~-~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 78 G-LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp C-SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred e-Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 2 2222 4477899999999999999999999999999654 333333 333 5999999999999999999999
Q ss_pred EEEEECCCce---------EEE----eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce--eeeEe-eCCcCCee
Q 009188 384 LLLLDREAKV---------ERY----IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK--LVAKY-KGHKRSRF 447 (540)
Q Consensus 384 i~~~d~~~~~---------~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~~~ 447 (540)
|++||..++. ... .+|...|.+++|+|+| +++++.|+.|++||+.+... ...++ .+|...+.
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 9999998863 222 3456799999999999 88899999999999987632 23455 36666655
Q ss_pred EEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEe--CCCCCCEEEEEeCCCcEEEecCC
Q 009188 448 VIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSW--NPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 448 ~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.+.+ + |..+|+++ ++.|++||+.+++......+|.+.|.+++| +|++. .+++++.||+ ++|...
T Consensus 231 svaF---s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKI---V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEE---E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESS
T ss_pred EEEE---E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeec
Confidence 5544 3 58888887 699999999988874444479999999999 99985 8999999999 999875
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.1e-32 Score=267.95 Aligned_cols=281 Identities=16% Similarity=0.248 Sum_probs=221.9
Q ss_pred cCCCCCCccccCCCcCcCCCCcceEEe--cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 200 NSSDRDMSLYTDHQCGRDQIPSRTLQI--LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
.+.|+.+.+|+.. ..+..+. +.+|.+.|++++|+|+|++||+|+.||+|+|||+..+ +....+.+|..
T Consensus 121 vgld~tV~lWd~~-------tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~~~~~~~h~~ 190 (420)
T 4gga_A 121 VALDNSVYLWSAS-------SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSA 190 (420)
T ss_dssp EEETTEEEEEETT-------TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSS
T ss_pred EEeCCEEEEEECC-------CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cEEEEEeCCCC
Confidence 3445666667533 2344444 4578889999999999999999999999999999866 67788999999
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce----E
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG-NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE----L 352 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~ 352 (540)
.+.+++|+ +..|++|+.|+.+++||.... ..+..+.+|...+..+.|+|++.++++++.||.|++|+...+. .
T Consensus 191 ~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 191 RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred ceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence 99998885 679999999999999998874 5677888999999999999999999999999999999997543 2
Q ss_pred EEeeccccceEEEEEEccCCCE-EEE--EecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEe--cCCeEEE
Q 009188 353 ECWKGQRTLKISDLEVTSDGKQ-IIT--MCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNL--LNQEIHL 426 (540)
Q Consensus 353 ~~~~~~~~~~v~~i~~~~~~~~-l~~--~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i 426 (540)
......+...|.+++|+|++.. +++ |+.|++|++||..+.. .........+.++.|+|+++.+++++ .|+.|++
T Consensus 269 ~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEE
Confidence 2344556678999999997654 444 3479999999999877 55566778899999999999998876 6899999
Q ss_pred EEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEe
Q 009188 427 WNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSW 496 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 496 (540)
||+.+. ..+..+.+|...+..+. ++|+|.+|++|+.||+|++||+....+......+...+....+
T Consensus 349 wd~~~~-~~v~~l~gH~~~V~~l~---~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 349 WKYPTM-AKVAELKGHTSRVLSLT---MSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EETTTC-CEEEEECCCSSCEEEEE---ECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EECCCC-cEEEEEcCCCCCEEEEE---EcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999987 78889999998755543 4899999999999999999999887777666655555444444
No 97
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.9e-33 Score=271.17 Aligned_cols=265 Identities=16% Similarity=0.263 Sum_probs=214.9
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecc-----cCcCcEEEEEEecC----CCeEEEEeCCCcEEEEEeecCCceEE
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQ-----GHTDEVWFLQFSHN----GKYLASSSNDRSAIIWEVDLNGGVTL 268 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~~~~sp~----g~~l~tg~~dg~i~iwd~~~~~~~~~ 268 (540)
+....++.+.+|+... ...+..+. .|.+.|++++|+|+ |++|++|+.||.|++||+..+ ..
T Consensus 38 ~~~~~~~~v~vw~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~~ 107 (366)
T 3k26_A 38 FATVGSNRVTLYECHS-------QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---QC 107 (366)
T ss_dssp EEEEETTEEEEEEECG-------GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---CE
T ss_pred EEECCCCEEEEEEcCC-------CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---eE
Confidence 3334444667775432 23333333 36688999999999 679999999999999998765 45
Q ss_pred EEEecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCCCeEEEEe---ecCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 009188 269 KHKLSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSSGNCLHVY---EKAGLGLVSCGWHPDRKWIFSGANDKSICM 344 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 344 (540)
...+.+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++
T Consensus 108 ~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 187 (366)
T 3k26_A 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 187 (366)
T ss_dssp EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEE
Confidence 667889999999999999 9999999999999999999999999888 688999999999999999999999999999
Q ss_pred EecCCceEEEee----------------------------ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCc----
Q 009188 345 WELGGKELECWK----------------------------GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK---- 392 (540)
Q Consensus 345 wd~~~~~~~~~~----------------------------~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~---- 392 (540)
||++++...... ..+...|.+++|+ +..+++++.|+.|++||..+.
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~ 265 (366)
T 3k26_A 188 WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDI 265 (366)
T ss_dssp EESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCG
T ss_pred EECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccc
Confidence 999865432211 1266789999998 789999999999999998764
Q ss_pred ------------eEEEeecCCceeEEEEcCC--CCEEEEEecCCeEEEEEecCCc---eeeeEeeCC--cCCeeEEEeee
Q 009188 393 ------------VERYIEEDQTITSFSLSRD--NKFLLVNLLNQEIHLWNIEGEV---KLVAKYKGH--KRSRFVIRSCF 453 (540)
Q Consensus 393 ------------~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~--~~~~~~i~~~~ 453 (540)
......+...|.+++|+|+ +++|++++.||.|++||+.+.. .....+..| ...+ ..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v---~~~~ 342 (366)
T 3k26_A 266 DKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAI---RQTS 342 (366)
T ss_dssp GGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCE---EEEE
T ss_pred cccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCce---EEEE
Confidence 2444567888999999999 9999999999999999998752 134466666 3443 3334
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCC
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
+++++++|++++.||.|++||+.+
T Consensus 343 ~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 343 FSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC--
T ss_pred eCCCCCeEEEEeCCCEEEEEEecC
Confidence 489999999999999999999753
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-33 Score=275.21 Aligned_cols=242 Identities=11% Similarity=0.090 Sum_probs=199.9
Q ss_pred ecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC--eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC
Q 009188 272 LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG--NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 272 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 349 (540)
...+.++|++++|+|++++|++++.|+.|++||+.++ +.+..+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446789999999999999999999999999999998 77888889999999999999999999999999999999987
Q ss_pred ce---EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-----EEEee-cCCceeEEEEcCCCCEEEEEec
Q 009188 350 KE---LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-----ERYIE-EDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 350 ~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~-~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
+. .......+...|.+++|+|+++.+++++.|+.|++||+.+.. ..... |...|.+++|+|+++++++++.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 65 444455677799999999999999999999999999998764 34444 8899999999999999999999
Q ss_pred CCeEEEEEecCC-----------------ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce---
Q 009188 421 NQEIHLWNIEGE-----------------VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL--- 480 (540)
Q Consensus 421 dg~i~i~d~~~~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--- 480 (540)
|+.|++||+... ......+ +|...+..+ .++|++++|++++.||.|++||+.+++.
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~---~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV---GFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE---EECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE---EECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 999999998521 2344555 666664443 4489999999999999999999999988
Q ss_pred -eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 481 -IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 481 -~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
+..+.+|...|.+++|+|++. +|++++.|+.+ +|+..
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCC
T ss_pred eeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeC
Confidence 888999999999999999985 88888777666 66665
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.4e-31 Score=258.83 Aligned_cols=283 Identities=12% Similarity=0.080 Sum_probs=210.6
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeE-EEeeCCCcE
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL-LTCGVEEAV 300 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i 300 (540)
.++..+.+|.+.|++++|+|||++|++|+.++ ++||+++.. ...... +...+..+++.++++.+ ++++.|+.|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence 44556788999999999999999999998775 789998643 222222 22357888899888887 567788999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc-eEEEeeccccceEEEEEEccCCCEEEE--
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK-ELECWKGQRTLKISDLEVTSDGKQIIT-- 377 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~-- 377 (540)
++||+.+++++..+. +...|.+++|+++. ++++ .|+.|++||+.+. ........ ....+++++ ..+++
T Consensus 84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~s 154 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSN 154 (355)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEE
T ss_pred EEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeC
Confidence 999999999999886 56689999998764 4444 4789999999776 32222111 344556666 56665
Q ss_pred EecCCeEEEEECCCc------------------eEEEeecCCceeEEEEcCCCCEEEEEecCCe-EEEEEecCCceeeeE
Q 009188 378 MCKESALLLLDREAK------------------VERYIEEDQTITSFSLSRDNKFLLVNLLNQE-IHLWNIEGEVKLVAK 438 (540)
Q Consensus 378 ~~~d~~i~~~d~~~~------------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~ 438 (540)
++.+|.|++||..+. ......|...|++++|+|++++|++++.|++ |++||+++. ..+..
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~~~~~ 233 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVRE 233 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-CEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEE
Confidence 579999999999874 3456678999999999999999999999998 999999987 66777
Q ss_pred ee-C-CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce--eEeec---------------------CCCCCeEE
Q 009188 439 YK-G-HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL--IGALP---------------------GHSGAVNC 493 (540)
Q Consensus 439 ~~-~-~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~---------------------~h~~~v~~ 493 (540)
+. + |...+..+ .++|++++|++++.|++|++||+..+.. ...+. .+......
T Consensus 234 ~~~g~h~~~v~~~---~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T 3vu4_A 234 FRRGLDRADVVDM---KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310 (355)
T ss_dssp EECTTCCSCEEEE---EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred EEcCCCCCcEEEE---EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence 76 5 77764443 4489999999999999999999976532 11111 11223467
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 494 VSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 494 l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
++|+|++. .+++++.||.+++|++..++..
T Consensus 311 ~a~~~d~~-~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 311 IAWISESS-LVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp EEESSSSE-EEEEETTTTEEEEEEEEEETTT
T ss_pred EEEeCCCC-EEEEEeCCCeEEEEEEEcCCCC
Confidence 99999996 8999999999999999876543
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-32 Score=271.90 Aligned_cols=246 Identities=13% Similarity=0.204 Sum_probs=205.4
Q ss_pred CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe-----------EEEEeecCC------------CcEEEEEEecCC
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN-----------CLHVYEKAG------------LGLVSCGWHPDR 330 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 330 (540)
.|.+.|++++|+|+|++|++|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 357899999999999999999999999999999877 578888998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEecCCceEE----------------------------------------EeeccccceEEEEEE
Q 009188 331 --KWIFSGANDKSICMWELGGKELE----------------------------------------CWKGQRTLKISDLEV 368 (540)
Q Consensus 331 --~~l~~~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~~~~~v~~i~~ 368 (540)
..|++++.||.|++||+.++... .+...|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999754331 223567778999999
Q ss_pred ccCCCEEEEEecCCeEEEEECCCce--EE--------EeecCCceeEEEEcCCC-CEEEEEecCCeEEEEEecCCcee--
Q 009188 369 TSDGKQIITMCKESALLLLDREAKV--ER--------YIEEDQTITSFSLSRDN-KFLLVNLLNQEIHLWNIEGEVKL-- 435 (540)
Q Consensus 369 ~~~~~~l~~~~~d~~i~~~d~~~~~--~~--------~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~-- 435 (540)
+|+++.++++ .|+.|++||+.... .. ...|...|.+++|+|++ +++++++.||.|++||+++....
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 89999999999533 22 23678899999999998 99999999999999999876321
Q ss_pred -eeEeeCCcC------------CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-CceeEeecCCCCC-----------
Q 009188 436 -VAKYKGHKR------------SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-CDLIGALPGHSGA----------- 490 (540)
Q Consensus 436 -~~~~~~~~~------------~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~----------- 490 (540)
...+..+.. . +..+.++|++++|++++. |.|++||+.+ ++++..+.+|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISS---ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTC---EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred eeeEeccCCCccccccccccCce---EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 566777664 4 334444899999999999 9999999997 8889999888642
Q ss_pred ----eEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 491 ----VNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 491 ----v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
+..++|+|++. +|++++.||.|++||+.+++...
T Consensus 341 ~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 341 CIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp GGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEE
T ss_pred ccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCccee
Confidence 33499999996 89999999999999999987654
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-31 Score=258.46 Aligned_cols=252 Identities=16% Similarity=0.172 Sum_probs=212.3
Q ss_pred EecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe---EEEEeecCCCcEEEEEEecCCC-EEEEEeCCCcEEEEe
Q 009188 271 KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN---CLHVYEKAGLGLVSCGWHPDRK-WIFSGANDKSICMWE 346 (540)
Q Consensus 271 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 346 (540)
...+|.+.|++++|+|++++|++++.|+.|++|++.+++ ....+..|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 346899999999999999999999999999999998877 3455568999999999999999 999999999999999
Q ss_pred c-CCceEEEeecc-ccceEEEEEEccCCCEEEEEecCCeEEEEECCC---------ce-EEEeecCCceeEEEEcCCCCE
Q 009188 347 L-GGKELECWKGQ-RTLKISDLEVTSDGKQIITMCKESALLLLDREA---------KV-ERYIEEDQTITSFSLSRDNKF 414 (540)
Q Consensus 347 ~-~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~---------~~-~~~~~~~~~i~~~~~s~~~~~ 414 (540)
+ .++....+... +...|.+++|+| +..+++++.|+.|++||+.+ .. .....+...+.+++|+|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-- 162 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--
T ss_pred eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--
Confidence 9 88776544431 667999999999 99999999999999999876 33 3334478899999999987
Q ss_pred EEEEecCCeEEEEEecC-Cce-eeeEeeCCcCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECCCC------ceeEeec
Q 009188 415 LLVNLLNQEIHLWNIEG-EVK-LVAKYKGHKRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRASC------DLIGALP 485 (540)
Q Consensus 415 l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~ 485 (540)
+++++.++.|++||++. ... .......+...+ ..+.++| ++.++++++.||.|++|++... +....+.
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i---~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI---RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE---EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred EEEEeCCCeEEEEECCccccccceeeecCCCCce---eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 99999999999999987 433 223334455543 3444488 8999999999999999999887 7788888
Q ss_pred CCCC---------CeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccC
Q 009188 486 GHSG---------AVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCH 529 (540)
Q Consensus 486 ~h~~---------~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~ 529 (540)
+|.. .|++++|+|++. +|++++.||.|++||+.+++.......
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred cccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhHhhhhhc
Confidence 8865 999999999986 899999999999999999987766443
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=261.88 Aligned_cols=265 Identities=13% Similarity=0.176 Sum_probs=214.4
Q ss_pred CCCCccccCCCcCcCCCCcceE-EecccCcCcEEEEEEecC---CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC
Q 009188 203 DRDMSLYTDHQCGRDQIPSRTL-QILQGHTDEVWFLQFSHN---GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP 278 (540)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~~~~sp~---g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 278 (540)
++.+.+|+... .+.. ....+|.+.|++++|+|+ |++|++|+.||.|++||+..+. .....+.+|...
T Consensus 43 d~~v~iw~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~ 113 (357)
T 3i2n_A 43 TGVIQLYEIQH-------GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--MPVYSVKGHKEI 113 (357)
T ss_dssp CEEEEEEEECS-------SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--SCSEEECCCSSC
T ss_pred CcEEEEEeCCC-------CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--ccEEEEEecccc
Confidence 66777775432 2222 223379999999999998 6999999999999999998653 145567899999
Q ss_pred eEEEE------ECcCCCeEEEeeCCCcEEEEECCCCe-EEEEeecCCC----cEEEEE----EecCCCEEEEEeCCCcEE
Q 009188 279 VSCVS------WSSDDQQLLTCGVEEAVRRWDVSSGN-CLHVYEKAGL----GLVSCG----WHPDRKWIFSGANDKSIC 343 (540)
Q Consensus 279 v~~l~------~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~dg~i~ 343 (540)
|.++. |+|++++|++++.||.|++||+.+++ .+..+..+.. .+.+++ |+|+++++++++.||.|+
T Consensus 114 v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~ 193 (357)
T 3i2n_A 114 INAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIK 193 (357)
T ss_dssp EEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEE
T ss_pred eEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEE
Confidence 99995 57899999999999999999999987 6777766544 788888 678999999999999999
Q ss_pred EEecCCceEEEeeccccceEEEEEEcc---CCCEEEEEecCCeEEEEECCCce--E-----EEeecCCceeEEEEcCCCC
Q 009188 344 MWELGGKELECWKGQRTLKISDLEVTS---DGKQIITMCKESALLLLDREAKV--E-----RYIEEDQTITSFSLSRDNK 413 (540)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~d~~i~~~d~~~~~--~-----~~~~~~~~i~~~~~s~~~~ 413 (540)
+||+++...... ..+...+.+++|+| ++..+++++.||.|++||.++.. . ....+...|.+++|+|+++
T Consensus 194 i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 194 LFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR 272 (357)
T ss_dssp EEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred EEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC
Confidence 999998877544 34456899999999 99999999999999999988754 1 2237899999999999998
Q ss_pred -EEEEEecCCeEEEEEecCCc------------------eeeeEeeCCcCCeeEEEeeeccCCCcEEE-EeeCCCcEEEE
Q 009188 414 -FLLVNLLNQEIHLWNIEGEV------------------KLVAKYKGHKRSRFVIRSCFGGLEQAFIA-SGSEDSQVYIW 473 (540)
Q Consensus 414 -~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~s~dg~i~iw 473 (540)
++++++.||.|++||++... ..+..+.+|...+..+ .++|++.+++ +++.||.|++|
T Consensus 273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL---DWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE---EECSSSTTEEEEEETTSEEEEE
T ss_pred cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE---EEcCCCCeEEEEecCCCcEEEE
Confidence 89999999999999997542 3566777887765444 3488999888 89999999999
Q ss_pred ECCCCce
Q 009188 474 HRASCDL 480 (540)
Q Consensus 474 d~~~~~~ 480 (540)
|+.+.+.
T Consensus 350 ~~~~~~~ 356 (357)
T 3i2n_A 350 IVTKLNK 356 (357)
T ss_dssp EECC---
T ss_pred ECCCccc
Confidence 9987654
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.7e-32 Score=268.04 Aligned_cols=275 Identities=19% Similarity=0.245 Sum_probs=221.2
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCce----EEEEEe
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGV----TLKHKL 272 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~----~~~~~~ 272 (540)
+..+.++.+.+|+...... ....+..+.+|.+.|++++|+| ++++|++|+.||+|++||+..+... .....+
T Consensus 51 ~~~~~~g~i~v~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 127 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGR---VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127 (402)
T ss_dssp BCCSSSCCEEEEETTCCEE---CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred EEEcCCCEEEEEECccCCC---CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence 3456778888887543211 1234556889999999999999 9999999999999999999865211 234567
Q ss_pred cCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCCCeEEEEe--ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC
Q 009188 273 SGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGNCLHVY--EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 349 (540)
.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++
T Consensus 128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 8999999999999998 69999999999999999999999999 78999999999999999999999999999999988
Q ss_pred ceEEEee-ccccc-eEEEEEEccCCCEEEEE---ecCCeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEE-e
Q 009188 350 KELECWK-GQRTL-KISDLEVTSDGKQIITM---CKESALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVN-L 419 (540)
Q Consensus 350 ~~~~~~~-~~~~~-~v~~i~~~~~~~~l~~~---~~d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~-~ 419 (540)
+...... ..+.. .+.++.|+|++.+++++ +.++.|++||..+.. .....+...+.+++|+|++++++++ +
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 208 GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET
T ss_pred CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc
Confidence 7766554 44443 48999999999999999 799999999998743 3334577889999999999999755 4
Q ss_pred cCCeEEEEEecCCceeeeEeeCC--cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce
Q 009188 420 LNQEIHLWNIEGEVKLVAKYKGH--KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 420 ~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 480 (540)
.||.|++||+.+....+..+..+ ...+..+ .++|++.++++ .++.+++|++.++..
T Consensus 288 ~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~---~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 288 GDSSIRYFEITSEAPFLHYLSMFSSKESQRGM---GYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp TCSCEEEEEECSSTTCEEEEEEECCSSCCSEE---EECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CCCeEEEEEecCCCcceEeecccccCCcccce---EEeccccccee--cceeEEEEEcCCCcE
Confidence 79999999998874334444443 3444343 33788888765 466999999987654
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.1e-30 Score=260.23 Aligned_cols=287 Identities=11% Similarity=0.087 Sum_probs=233.7
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEE-----EecCCCCCeEEEEECcCCCeEEEeeC
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKH-----KLSGHQKPVSCVSWSSDDQQLLTCGV 296 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~l~~s~~~~~l~s~~~ 296 (540)
+.+..+..+. .+.+++|+|++.++++++.++.|++||+..+. ... .+.+|.+.|.+++|++++.++++++.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ---TVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCC---EEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCe---EeeecCcccccccCCceeEEEEcCCCEEEEEECC
Confidence 4455555554 45699999988888888889999999987653 223 34588999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEE
Q 009188 297 EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQI 375 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 375 (540)
|+.|++||+.+++.+..+..+...+.+++|+|+++.+++++ .|+.|++||++++........+ ..+.+++|+|+++.+
T Consensus 190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKEL 268 (433)
T ss_dssp GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEE
T ss_pred CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEE
Confidence 99999999999999999988999999999999999886554 7999999999887776655544 369999999999999
Q ss_pred EEEe--------cCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEE-EEEecCCeEEEEEecCCceeeeEeeCCcCC
Q 009188 376 ITMC--------KESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFL-LVNLLNQEIHLWNIEGEVKLVAKYKGHKRS 445 (540)
Q Consensus 376 ~~~~--------~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 445 (540)
++++ .|+.|++||..+.. .....+...+.+++|+|+++.+ ++++.++.|++||+.+. +....+.. ...
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~-~~~ 346 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIPV-FDK 346 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSS
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEecC-CCC
Confidence 9888 48899999998766 4445566688999999999755 55688999999999876 56666553 333
Q ss_pred eeEEEeeeccCCCcEEEEeeC---------------CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEe-C
Q 009188 446 RFVIRSCFGGLEQAFIASGSE---------------DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS-D 509 (540)
Q Consensus 446 ~~~i~~~~~~~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~ 509 (540)
. ..+.++|+++++++++. ||.|++||..+++.+..+.. ...+.+++|+|++. .|++++ .
T Consensus 347 ~---~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~ 421 (433)
T 3bws_A 347 P---NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNR-YLVISDFL 421 (433)
T ss_dssp E---EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSC-EEEEEETT
T ss_pred C---CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCC-EEEEEECC
Confidence 2 23344899998888776 57999999999999988885 46799999999997 666665 5
Q ss_pred CCcEEEecCCC
Q 009188 510 DRTIRIWGLKD 520 (540)
Q Consensus 510 Dg~i~iw~~~~ 520 (540)
|+.|++|++..
T Consensus 422 d~~i~v~~~~~ 432 (433)
T 3bws_A 422 DHQIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEETT
T ss_pred CCeEEEEEecC
Confidence 99999999864
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.2e-32 Score=269.66 Aligned_cols=251 Identities=12% Similarity=0.231 Sum_probs=201.1
Q ss_pred ecCCCCCeEEEEECc-CCCeEEEeeCCCcEEEEECCCCeE--EEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEec
Q 009188 272 LSGHQKPVSCVSWSS-DDQQLLTCGVEEAVRRWDVSSGNC--LHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWEL 347 (540)
Q Consensus 272 ~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 347 (540)
..+|...|++|+|+| ++++||+|+.||.|+|||+.+++. ...+.+|...|++++|+| ++++|++|+.||+|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 456888999999999 567999999999999999987754 445568999999999998 7889999999999999999
Q ss_pred CCceEEEeeccc--cceEEEEEEccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCC-EEEEEecCCe
Q 009188 348 GGKELECWKGQR--TLKISDLEVTSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNK-FLLVNLLNQE 423 (540)
Q Consensus 348 ~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~ 423 (540)
++.........+ ...+.+++|+|++.++++|+.||.|++||+++.. ..+..|...|++++|+|++. ++++++.|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 887766555443 3357889999999999999999999999998765 45567889999999999886 6788999999
Q ss_pred EEEEEecCCcee--eeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCC------CeEEEE
Q 009188 424 IHLWNIEGEVKL--VAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSG------AVNCVS 495 (540)
Q Consensus 424 i~i~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~ 495 (540)
|++||++..... .....+|... +..+.++|++.+|++++.||.|++||+.++.....+..|.. .+....
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~---v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHP---VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSC---EEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred eeEEecccccccceEEEeeecccc---ccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 999999865221 2223455555 44455589999999999999999999999988877766543 233456
Q ss_pred eCCCCCCEEEEEe------------CCCcEEEecCCCCCcccc
Q 009188 496 WNPANPHMLASAS------------DDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 496 ~~~~~~~~l~s~~------------~Dg~i~iw~~~~~~~~~~ 526 (540)
|+|++. ++++++ .++.|++||..++++...
T Consensus 352 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 352 WHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp ECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 777664 444433 346799999999987765
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.3e-30 Score=252.27 Aligned_cols=271 Identities=10% Similarity=0.105 Sum_probs=221.6
Q ss_pred CeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeE-EEeeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 009188 244 KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL-LTCGVEEAVRRWDVSSGNCLHVYEKAGLGLV 322 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 322 (540)
.++++++.|+.|++||+..+ +....+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred EEEEEcCCCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Ccc
Confidence 36788899999999999765 5556666664 58999999999977 667789999999999999998887665 899
Q ss_pred EEEEecCCCEEEEEe-CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEE-EEEecCCeEEEEECCCce-EEEeec
Q 009188 323 SCGWHPDRKWIFSGA-NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQI-ITMCKESALLLLDREAKV-ERYIEE 399 (540)
Q Consensus 323 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~i~~~d~~~~~-~~~~~~ 399 (540)
+++|+|+++++++++ .++.|++||+.+++.......+. .+.+++|+|+++.+ ++++.++.|++||..+.. ......
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 999999999886554 66999999999887766555443 68999999999987 677789999999998866 444455
Q ss_pred CCceeEEEEcCCCCEE-EEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee---CCCcEEEEEC
Q 009188 400 DQTITSFSLSRDNKFL-LVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS---EDSQVYIWHR 475 (540)
Q Consensus 400 ~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s---~dg~i~iwd~ 475 (540)
...+.+++|+|+++++ ++++.++.|++||+++. .....+..+. . +..+.++++++++++++ .++.|++||+
T Consensus 157 ~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-~---~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEA-A---PSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSS-E---EEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEecCC-C---ccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 6778999999999887 56677899999999887 5555555432 2 23344489999988888 6899999999
Q ss_pred CCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 476 ASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 476 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
.+++.+..+..|. .+.+++|+|++..++++++.|+.|++||+.++++...
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 232 GTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp TTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 9999998888765 5899999999975558889999999999999877654
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.6e-31 Score=258.92 Aligned_cols=314 Identities=15% Similarity=0.219 Sum_probs=213.2
Q ss_pred cccccCCCCCCccccCCCcCcCCCC-cceE-----EecccCcCcEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCceEE
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIP-SRTL-----QILQGHTDEVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVTL 268 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~l~~h~~~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~~ 268 (540)
.++..+.++.+.+|+.......... .... ....+|.+.|++++|+| ++.+|++|+.||.|++||+..+ ..
T Consensus 58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~ 134 (408)
T 4a11_B 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---QT 134 (408)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT---EE
T ss_pred EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC---cc
Confidence 4556677888888875543211110 0111 11246999999999999 7889999999999999999865 34
Q ss_pred EEEecCCCCCeEEEEECcC---CCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC-EEEEEeCCCcEEE
Q 009188 269 KHKLSGHQKPVSCVSWSSD---DQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK-WIFSGANDKSICM 344 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i 344 (540)
...+. +...+.++.|++. +.++++++.|+.|++||+.+++.+..+..|...|.+++|+|+++ .+++|+.||.|++
T Consensus 135 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 135 ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213 (408)
T ss_dssp EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEE
Confidence 44443 7888999999985 45999999999999999999999999999999999999999998 5889999999999
Q ss_pred EecCCce-EEEee---------------ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe-------ecCC
Q 009188 345 WELGGKE-LECWK---------------GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-------EEDQ 401 (540)
Q Consensus 345 wd~~~~~-~~~~~---------------~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------~~~~ 401 (540)
||++... ..... ..+...|.+++|+|+++++++++.|+.|++||+.+...... ....
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 293 (408)
T 4a11_B 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293 (408)
T ss_dssp EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence 9997543 11111 35667899999999999999999999999999987652211 1112
Q ss_pred ceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee
Q 009188 402 TITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI 481 (540)
Q Consensus 402 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 481 (540)
.+........+..+++++.++.|++||+.+. ..+..+.+|...+..+ .++|++.+|++|+.||.|++||+.+++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~---~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCC---VFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp CCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEE---EEETTTTEEEEEETTSCEEEEEECC----
T ss_pred cceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEE---EEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 2222333344566777788999999999887 7888888888875554 34889999999999999999999999887
Q ss_pred EeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 482 GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 482 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
.....+.. ...+.|.....+.+++.|+.+++|+...
T Consensus 370 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 370 PDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------------------------
T ss_pred CCCCceEe---ccccccccceeecccCccCceeecCCcc
Confidence 66553322 2334454444677888999999998764
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.8e-31 Score=261.32 Aligned_cols=275 Identities=18% Similarity=0.348 Sum_probs=214.8
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
+.++.++.+.+|+. ...+....+.+|.+.|++++| ++++|++|+.||+|++||+..+ .....+.+|..
T Consensus 147 ~~g~~dg~i~iwd~-------~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~ 214 (435)
T 1p22_A 147 VSGLRDNTIKIWDK-------NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---EMLNTLIHHCE 214 (435)
T ss_dssp EEEESSSCEEEEES-------SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC---CEEEEECCCCS
T ss_pred EEEeCCCeEEEEeC-------CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC---cEEEEEcCCCC
Confidence 44455666666653 235678889999999999999 7889999999999999999866 56677889999
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE---EEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEE
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL---HVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC 354 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 354 (540)
.|.+++|+ +..+++|+.||.|++||+.++... ..+.+|...|.+++| +++++++|+.||.|++||++++....
T Consensus 215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 99999997 459999999999999999987654 677789999999999 67899999999999999999888777
Q ss_pred eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 355 WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
....+...+.++.+ ++..+++++.||.|++||..+.. .....|...|.+++| +++++++|+.||.|++||+.+.
T Consensus 291 ~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred EEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 77777788999988 47899999999999999998765 455568889999999 7899999999999999999754
Q ss_pred ce--------eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCC
Q 009188 433 VK--------LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNP 498 (540)
Q Consensus 433 ~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 498 (540)
.. .+..+.+|...+..+.+ ++.++++|+.||.|++||+.+........ ...+..++.|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 434 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF-----DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYIS 434 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE-----CSSCEEECCSSSEEEEEC------------------------
T ss_pred CCccccccchheeeccCCCCCeEEEEe-----CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeeec
Confidence 21 67778888887666543 67889999999999999998876654433 234455555543
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.5e-30 Score=250.39 Aligned_cols=269 Identities=15% Similarity=0.219 Sum_probs=213.0
Q ss_pred EEEEEecCCCCCeEEEEECcC---CCeEEEeeCCCcEEEEECCC-CeEE-EEeecCCCcEEEEEEecCCCEEEEEeCCCc
Q 009188 267 TLKHKLSGHQKPVSCVSWSSD---DQQLLTCGVEEAVRRWDVSS-GNCL-HVYEKAGLGLVSCGWHPDRKWIFSGANDKS 341 (540)
Q Consensus 267 ~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 341 (540)
.....+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 455678899999999999999 69999999999999999997 5554 788899999999999999999999999999
Q ss_pred EEEEecCCceEEEeeccccceEEEEEE--ccCCCEEEEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEE
Q 009188 342 ICMWELGGKELECWKGQRTLKISDLEV--TSDGKQIITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVN 418 (540)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~ 418 (540)
|++||++++...... .+...|.+++| ++++..+++++.|+.|++||+++.. .........+.++.+. +..++++
T Consensus 110 v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 186 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIA-QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVA 186 (368)
T ss_dssp EEEEETTTTEEEEEE-ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEE
T ss_pred EEEEEcCCCCceeec-cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEE
Confidence 999999988876644 45668999999 8999999999999999999998765 3333444556666555 4588999
Q ss_pred ecCCeEEEEEecCCceeeeEeeCC-cCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECCCC---ceeEeecCCCC----
Q 009188 419 LLNQEIHLWNIEGEVKLVAKYKGH-KRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRASC---DLIGALPGHSG---- 489 (540)
Q Consensus 419 ~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~---- 489 (540)
+.++.+.+|+++............ ......+....... ....+++++.||.|++||+... ..+..+.+|..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 999999999998765544444332 22333333322111 2234999999999999999987 56777887776
Q ss_pred --------CeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc-CCCce---EeccCC
Q 009188 490 --------AVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC-HSNGV---HYCNGG 539 (540)
Q Consensus 490 --------~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~-~~~~v---~~c~~g 539 (540)
.|++++|+|++. +|++++.||.|++||+.++++..... |...+ .|+.+|
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp -CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred ccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 799999999996 89999999999999999988776543 33333 444444
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-30 Score=253.31 Aligned_cols=246 Identities=11% Similarity=0.050 Sum_probs=193.7
Q ss_pred EecccCcCcEEEEEEecCCCeEEEE-----------eCCCcEEEEEeecCCce-EEEEEe-----cCCCCCeEEEEECcC
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASS-----------SNDRSAIIWEVDLNGGV-TLKHKL-----SGHQKPVSCVSWSSD 287 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg-----------~~dg~i~iwd~~~~~~~-~~~~~~-----~~h~~~v~~l~~s~~ 287 (540)
..+.+|.+.|.+++++ ++.+++| +.|+.+++|++...... ...... ..+...+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 3578899999988765 5566665 45788999998765432 222222 234456999999999
Q ss_pred CCeEEEe--eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEE-EeeccccceE
Q 009188 288 DQQLLTC--GVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELE-CWKGQRTLKI 363 (540)
Q Consensus 288 ~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v 363 (540)
|++++++ +.|++|+|||+.+++++..+. |...|.+++|+|||+++++++.++ +.+|+..+ .... .....+...+
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCE
Confidence 9998755 478999999999999998885 667899999999999999998665 55555544 4333 3345567789
Q ss_pred EEEEEccCCCEEEEEecCC----eEEEEECCCce------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc
Q 009188 364 SDLEVTSDGKQIITMCKES----ALLLLDREAKV------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV 433 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~~d~----~i~~~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 433 (540)
.+++|+|++..+++++.++ .++.|+..... .....+...|++++|+|+|++|++|+.|+.|++||+++.
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~- 301 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL- 301 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT-
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC-
Confidence 9999999999999999887 68889876644 234567889999999999999999999999999999987
Q ss_pred eeeeE-eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC
Q 009188 434 KLVAK-YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 434 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 478 (540)
+++.. +.+|...+..+. ++|+|++|++||.|++|+|||+...
T Consensus 302 ~~~~~~~~gH~~~V~~v~---fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 SMSKIFKQAHSFAITEVT---ISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEETTSSSSCEEEEE---ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cEEEEecCcccCCEEEEE---ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 66665 478988755544 4999999999999999999998643
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=257.75 Aligned_cols=267 Identities=8% Similarity=0.020 Sum_probs=206.3
Q ss_pred EEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC---------CC
Q 009188 238 QFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS---------SG 308 (540)
Q Consensus 238 ~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---------~~ 308 (540)
.+.+++.+|++|+.||+|++||+..+.... .+. ...|.++.|+|+ +++++.|++|++|+.. ++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~---~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT---TIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEE---EEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEE---EEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 445678899999999999999998764332 232 456778889988 9999999999999665 55
Q ss_pred eEEEEee-cCCCcEEEEEEec--CCCEEEEEeCCCcEEEEecCCceEEEee-ccccceEEEEEEccCCCEEEEEecCCeE
Q 009188 309 NCLHVYE-KAGLGLVSCGWHP--DRKWIFSGANDKSICMWELGGKELECWK-GQRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 309 ~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
+.+..+. .|...|.+++|+| +++++++++.||.|++||++++...... ..+...+.+++|+|++.++++|+.||.|
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i 194 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL 194 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 5555554 6667899999999 9999999999999999999887765544 4445579999999999999999999999
Q ss_pred EEEECCCce---EEEee-cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeC---CcCCeeEEEeeeccCC
Q 009188 385 LLLDREAKV---ERYIE-EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKG---HKRSRFVIRSCFGGLE 457 (540)
Q Consensus 385 ~~~d~~~~~---~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 457 (540)
++||+++.. ..+.. |..+|++++|+|++.+|++++ ++.|++||++.. .....+.. +...... ..+.++|+
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 271 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGT-VTYDIDDS 271 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CC-EEEEECTT
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-Ccceeecccccccccccc-eEEEECCC
Confidence 999998865 34455 789999999999999999999 559999999876 33333332 2222111 23445899
Q ss_pred CcEEEEeeC-CCcEEEEECCCCceeEeecCCCCCeEEEEeCC---CCCCEEEEEeCCCcEEEecCCC
Q 009188 458 QAFIASGSE-DSQVYIWHRASCDLIGALPGHSGAVNCVSWNP---ANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 458 ~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
+++|++++. |+.|++|++.+....... .++..++|.| +.. .+++++.||.+.++-...
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFT-DMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCC-EEEEEEETTEEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccc-eeEEEecCCceEEEEecC
Confidence 999999998 999999998766543333 5677888988 664 889999999999886543
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1e-31 Score=263.56 Aligned_cols=271 Identities=11% Similarity=0.074 Sum_probs=183.5
Q ss_pred ecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCce--EEEEEecCCCCCeEEEEECc--------CCCeEEEee
Q 009188 226 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGV--TLKHKLSGHQKPVSCVSWSS--------DDQQLLTCG 295 (540)
Q Consensus 226 ~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~--------~~~~l~s~~ 295 (540)
...+|...+....+++++.+|++|+.|++|+|||...+... .....+.+|.+.|.+++|+| ++++|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 33445556666666778889999999999999999865322 22334679999999999998 789999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC-EEEEEeCCCcEEEEecCCceEEEeeccccce----EEEEEEcc
Q 009188 296 VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK-WIFSGANDKSICMWELGGKELECWKGQRTLK----ISDLEVTS 370 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~~i~~~~ 370 (540)
.|++|+|||+.++.++..+..|...+.+++|+|++. +|++|+.||+|++||++++........+... +......+
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 999999999999988888889999999999999874 7999999999999999876543322211111 11111111
Q ss_pred CCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEc-CCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCee--
Q 009188 371 DGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLS-RDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRF-- 447 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-- 447 (540)
... ......+...+.++.|+ |+++.+++++.|+.+++||+... .....+..+.....
T Consensus 244 ~~~-------------------~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 244 LVN-------------------TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPK 303 (393)
T ss_dssp GC-------------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred cee-------------------eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccE
Confidence 100 12223567788888886 78999999999999999998765 22333322221111
Q ss_pred --------------EEEeeecc-CCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCc
Q 009188 448 --------------VIRSCFGG-LEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRT 512 (540)
Q Consensus 448 --------------~i~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~ 512 (540)
.+..++++ .++.++++|+.||.|++||+.+++....+.+|..+|++++|+|+|. +||+++.||
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~-~LA~as~~G- 381 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS-HLAIATEGS- 381 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS-EEEEEESSE-
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-
Confidence 11122323 3556778899999999999999999988888999999999999996 999998876
Q ss_pred EEEecC
Q 009188 513 IRIWGL 518 (540)
Q Consensus 513 i~iw~~ 518 (540)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 444443
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.5e-30 Score=258.64 Aligned_cols=252 Identities=17% Similarity=0.283 Sum_probs=209.4
Q ss_pred EEecccCcCcEEEEEEecC-CCeEEEEeCCCcEEEEEeecC-------CceEEEEEecCCCCCeEEEEECcCCC-eEEEe
Q 009188 224 LQILQGHTDEVWFLQFSHN-GKYLASSSNDRSAIIWEVDLN-------GGVTLKHKLSGHQKPVSCVSWSSDDQ-QLLTC 294 (540)
Q Consensus 224 ~~~l~~h~~~V~~~~~sp~-g~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~ 294 (540)
.....+|.+.|++++|+|+ +.+||+|+.||.|++|++... ........+.+|...|.+++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3556789999999999997 779999999999999999751 11345567789999999999999988 99999
Q ss_pred eCCCcEEEEECCCCeE-------EEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCc---eEEEeeccccceE
Q 009188 295 GVEEAVRRWDVSSGNC-------LHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGK---ELECWKGQRTLKI 363 (540)
Q Consensus 295 ~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v 363 (540)
+.||.|++||+.++.. ...+..|...|.+++|+| ++..|++++.||.|++||+++. ........+...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987422 456678999999999999 7789999999999999999865 3334444666789
Q ss_pred EEEEEccCCC-EEEEEecCCeEEEEECCCce---EEEeecCCceeEEEEcCCCC-EEEEEecCCeEEEEEecCCc-----
Q 009188 364 SDLEVTSDGK-QIITMCKESALLLLDREAKV---ERYIEEDQTITSFSLSRDNK-FLLVNLLNQEIHLWNIEGEV----- 433 (540)
Q Consensus 364 ~~i~~~~~~~-~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~----- 433 (540)
++++|+|++. .+++++.||.|++||++... .....|...|.+++|+|+++ ++++++.|+.|++||+....
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 9999999997 68899999999999998732 56667899999999999985 68999999999999998621
Q ss_pred --------eeeeEeeCCcCCeeEEEeeeccCCCc-EEEEeeCCCcEEEEECCCC
Q 009188 434 --------KLVAKYKGHKRSRFVIRSCFGGLEQA-FIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 434 --------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~ 478 (540)
..+..+.+|...+..+ .++|++. ++++++.||.|++|++...
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~---~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDF---SWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEE---EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccccCCcceEEEcCCCCCCceEE---EECCCCCCEEEEEECCCCEEEeEcccc
Confidence 4556666777664444 3478888 9999999999999998654
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=7.2e-29 Score=243.55 Aligned_cols=307 Identities=12% Similarity=0.135 Sum_probs=238.3
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeE-EEEeCCCcEEEEEeecCCceEEEEEecCCC
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYL-ASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ 276 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~ 276 (540)
+..+.++.+.+|+.. ..+.+..+.+|. .+.+++|+|+|+++ ++++.|+.|++||+..+ +....+..+.
T Consensus 6 vs~~~d~~v~v~d~~-------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~ 74 (391)
T 1l0q_A 6 IANSESDNISVIDVT-------SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS 74 (391)
T ss_dssp EEETTTTEEEEEETT-------TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS
T ss_pred EEcCCCCEEEEEECC-------CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC
Confidence 445567778888643 245667777775 58999999999977 66778999999998765 4555555544
Q ss_pred CCeEEEEECcCCCeEEEee-CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEE-EEEeCCCcEEEEecCCceEEE
Q 009188 277 KPVSCVSWSSDDQQLLTCG-VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWI-FSGANDKSICMWELGGKELEC 354 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 354 (540)
.+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++...
T Consensus 75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 899999999999886554 6799999999999998888655 478999999999977 677889999999998877766
Q ss_pred eeccccceEEEEEEccCCCEE-EEEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEe---cCCeEEEEEe
Q 009188 355 WKGQRTLKISDLEVTSDGKQI-ITMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNL---LNQEIHLWNI 429 (540)
Q Consensus 355 ~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~ 429 (540)
....+. .+.+++|+|+++.+ ++++.++.|++||..+.. .....+...+.+++|+|+++++++++ .++.|++||+
T Consensus 153 ~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 153 TVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred EEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 555443 67999999999988 566788999999998876 45556677899999999999999988 6899999999
Q ss_pred cCCceeeeEeeCCcCCeeEEEeeeccCCCcEE-EEeeCCCcEEEEECCCCceeEeecCCCCCeE---EEEeCCCC-----
Q 009188 430 EGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI-ASGSEDSQVYIWHRASCDLIGALPGHSGAVN---CVSWNPAN----- 500 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~---~l~~~~~~----- 500 (540)
.+. ..+..+..+... ..+.++++++++ ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 232 ~~~-~~~~~~~~~~~~----~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T 1l0q_A 232 GTN-KITARIPVGPDP----AGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPS 306 (391)
T ss_dssp TTT-EEEEEEECCSSE----EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCB
T ss_pred CCC-eEEEEEecCCCc----cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccc
Confidence 877 666777665532 233348889877 6778899999999999999988876654421 12222211
Q ss_pred ----------------CCEEEEEeCCCcEEEecCCCCCc
Q 009188 501 ----------------PHMLASASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 501 ----------------~~~l~s~~~Dg~i~iw~~~~~~~ 523 (540)
+..+.+.+.|..+++|++.++..
T Consensus 307 a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 307 ADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred cccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 12466677899999999988764
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.3e-32 Score=264.72 Aligned_cols=244 Identities=10% Similarity=0.156 Sum_probs=203.1
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC-----CeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK-----PVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
+|.+.|++++|||+|.+||+++.||.|+|||.. .....+. |.. .|.+++|||||++|++|+.||+|++|
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-----~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-----KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-----EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-----ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 568899999999999999999999999999853 2555566 665 49999999999999999999999999
Q ss_pred ECCCCe-------EEEEe----ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEE----EeeccccceEEEEEE
Q 009188 304 DVSSGN-------CLHVY----EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELE----CWKGQRTLKISDLEV 368 (540)
Q Consensus 304 d~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~i~~ 368 (540)
|+.++. .+..+ .+|...|.+++|+|+| +++++.|++|++||+.++... .+...+...|.+++|
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 999885 36676 5667899999999999 889999999999999876632 233456678999999
Q ss_pred ccCCCEEEEEecCCeEEEEECCCceE-EEe-ecCCceeEEEE--cCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC
Q 009188 369 TSDGKQIITMCKESALLLLDREAKVE-RYI-EEDQTITSFSL--SRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444 (540)
Q Consensus 369 ~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~-~~~~~i~~~~~--s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 444 (540)
+ |..+++++ +++|++||..+... ... +|...+.+++| +|++..+++++.+|+ ++|....
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~------------- 297 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE------------- 297 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-------------
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-------------
Confidence 9 68888887 69999999998774 444 78999999999 999999999999999 9999761
Q ss_pred CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 445 SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 445 ~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
+. ++|++..+++. |+++++|+...+. +..+.+ ...|++++|+|+|. ++|+++.
T Consensus 298 ----~~---~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~-~lA~~~~ 350 (588)
T 2j04_A 298 ----LH---VTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGY-SIAIVYD 350 (588)
T ss_dssp ----EE---EECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSS-EEEEEEE
T ss_pred ----EE---ECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCC-EEEEEEe
Confidence 11 27788777665 9999999975444 445554 67799999999996 8888764
No 116
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.6e-29 Score=240.63 Aligned_cols=264 Identities=16% Similarity=0.274 Sum_probs=218.3
Q ss_pred cCCCCCCccccCCCcCcCCCCcceEEe--cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC
Q 009188 200 NSSDRDMSLYTDHQCGRDQIPSRTLQI--LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 277 (540)
.+.|+.+.+|+.. ..+.++. +.+|...|++++|+|+|++|++|+.||+|++|++..+ +....+.+|..
T Consensus 41 vg~D~tV~iWd~~-------tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---~~~~~~~~h~~ 110 (318)
T 4ggc_A 41 VALDNSVYLWSAS-------SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSA 110 (318)
T ss_dssp EEETTEEEEEETT-------TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSS
T ss_pred EEeCCEEEEEECC-------CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---eeEEEecCccc
Confidence 3456777787543 2444554 4578889999999999999999999999999999866 66778899999
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE----
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG-NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL---- 352 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---- 352 (540)
.+.++.+ ++..+++++.++.+++|+..++ ..+..+.+|...+..+.++++++++++++.||.|++||+++++.
T Consensus 111 ~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 111 RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC
T ss_pred eEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc
Confidence 8887665 5679999999999999998875 55677889999999999999999999999999999999976432
Q ss_pred EEeeccccceEEEEEEccCCCEEE---EEecCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEe--cCCeEEE
Q 009188 353 ECWKGQRTLKISDLEVTSDGKQII---TMCKESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNL--LNQEIHL 426 (540)
Q Consensus 353 ~~~~~~~~~~v~~i~~~~~~~~l~---~~~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i 426 (540)
......+...+.++.+++++..++ +++.++.|++||..... .....+...+..+.|+|+++.+++++ .|+.|++
T Consensus 189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~i 268 (318)
T 4ggc_A 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 268 (318)
T ss_dssp SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEE
Confidence 233444556899999998876443 55678999999998876 55667788899999999999888765 6899999
Q ss_pred EEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc
Q 009188 427 WNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 427 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
||+++. ..+..+.+|...+..+. ++|++++|++|+.||+|+|||+....
T Consensus 269 wd~~~~-~~~~~l~gH~~~V~~l~---~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 269 WKYPTM-AKVAELKGHTSRVLSLT---MSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTC-CEEEEECCCSSCEEEEE---ECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EECCCC-cEEEEEcCCCCCEEEEE---EcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999987 78889999998755544 48999999999999999999987654
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.4e-28 Score=226.80 Aligned_cols=274 Identities=11% Similarity=0.081 Sum_probs=186.3
Q ss_pred EEEEEEecCCC---eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC----CcEEEEECC
Q 009188 234 VWFLQFSHNGK---YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE----EAVRRWDVS 306 (540)
Q Consensus 234 V~~~~~sp~g~---~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~ 306 (540)
+.++-|-..|- .+++++. ..|++|+.......+..+++..|..+|..+.+.||..-|++..-. +.|+..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55555644333 6777776 589999998877778999999999999999999865443332211 011111111
Q ss_pred CC----eEEEEeecCCCcEEEEEEecCCCEEEEEe--CCCcEEEEec-CCceEEEeeccccceEEEEEEcc---CCCEEE
Q 009188 307 SG----NCLHVYEKAGLGLVSCGWHPDRKWIFSGA--NDKSICMWEL-GGKELECWKGQRTLKISDLEVTS---DGKQII 376 (540)
Q Consensus 307 ~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~ 376 (540)
.. .....-.++...+..+ ++++.+.+++ .|+.|++|++ ..++.......+...++.++|++ ++..++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence 11 1111112233333333 4555555533 5889999999 44555555556666788888988 789999
Q ss_pred EEecCCeEEEEECCCce-EEEe-ec---CCceeEEEEcCCCCEE------------EEEecCCeEEEEEecCCceeeeEe
Q 009188 377 TMCKESALLLLDREAKV-ERYI-EE---DQTITSFSLSRDNKFL------------LVNLLNQEIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~-~~~~-~~---~~~i~~~~~s~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~ 439 (540)
+++.|++|++||+.++. ...+ .+ ...+.+++|+|+|.++ ++|+.|++|++||..++ +.+..+
T Consensus 198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~ 276 (356)
T 2w18_A 198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVM 276 (356)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT-EEEEEE
T ss_pred EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EEEEEE
Confidence 99999999999999876 2333 33 2357778999999887 45778899999999877 554443
Q ss_pred -----eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeE-EEEeCCCCCCEEEEEeCCCcE
Q 009188 440 -----KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVN-CVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 440 -----~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~Dg~i 513 (540)
.+|... .+.. +.++.++++|+.||+|+|||+.+++++.++.+|...+. .++|+|+++ +|+||+.|++|
T Consensus 277 ~~~~p~Gh~~~--~lsg---~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TI 350 (356)
T 2w18_A 277 LYCLPPGQAGR--FLEG---DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNI 350 (356)
T ss_dssp EECCCTTCCCC--EEEE---EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCE
T ss_pred EeeccCCCcce--eEcc---ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcE
Confidence 244433 2222 23377899999999999999999999999999987665 589999996 99999999999
Q ss_pred EEecC
Q 009188 514 RIWGL 518 (540)
Q Consensus 514 ~iw~~ 518 (540)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99986
No 118
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=7.7e-30 Score=242.52 Aligned_cols=230 Identities=20% Similarity=0.306 Sum_probs=189.8
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEec--CCCeEEEEeCCCcEEEEEeecCCceEEEEEec
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSH--NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS 273 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 273 (540)
.+++++.|+.+.+|+.... ....+..+.+|.+.|++++|+| ++++|++|+.|++|++||+..+. ......+.
T Consensus 27 ~lasgs~D~~v~lwd~~~~-----~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~~ 100 (316)
T 3bg1_A 27 RLATCSSDRSVKIFDVRNG-----GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT-WEKSHEHA 100 (316)
T ss_dssp EEEEEETTTEEEEEEEETT-----EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC-CCEEEEEC
T ss_pred EEEEEeCCCeEEEEEecCC-----CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc-ceEEEEcc
Confidence 4566778888888864321 1235678999999999999986 48999999999999999987542 23456788
Q ss_pred CCCCCeEEEEECcC--CCeEEEeeCCCcEEEEECCCCeE---EEEeecCCCcEEEEEEecC-----------------CC
Q 009188 274 GHQKPVSCVSWSSD--DQQLLTCGVEEAVRRWDVSSGNC---LHVYEKAGLGLVSCGWHPD-----------------RK 331 (540)
Q Consensus 274 ~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------~~ 331 (540)
+|...|.+++|+|+ +.+|++|+.|+.|++||+.++.. ...+..|...+.+++|+|+ ++
T Consensus 101 ~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (316)
T 3bg1_A 101 GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK 180 (316)
T ss_dssp CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCC
T ss_pred CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccc
Confidence 99999999999998 78999999999999999987632 3445678889999999997 46
Q ss_pred EEEEEeCCCcEEEEecCCc---eEEEeeccccceEEEEEEccCC----CEEEEEecCCeEEEEECCCc------eEEEee
Q 009188 332 WIFSGANDKSICMWELGGK---ELECWKGQRTLKISDLEVTSDG----KQIITMCKESALLLLDREAK------VERYIE 398 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~d~~i~~~d~~~~------~~~~~~ 398 (540)
+|++|+.|+.|++||++.. ........|...|.+++|+|++ ..|++++.|++|++|+.... ......
T Consensus 181 ~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 181 RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 8999999999999999753 3444556677799999999987 89999999999999998762 123445
Q ss_pred cCCceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 399 EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 399 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 261 ~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 261 FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 788999999999999999999999999999864
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=246.61 Aligned_cols=239 Identities=15% Similarity=0.182 Sum_probs=197.1
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe---EEEEeecC------------------------------------
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN---CLHVYEKA------------------------------------ 317 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~------------------------------------ 317 (540)
.++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899999999966655 57899999999998 66655532
Q ss_pred ------------------CCcEEEEEEecCCCEE-EEEeCCCcEEEEecC--CceEEEeec--cccceEEEEEEccCCCE
Q 009188 318 ------------------GLGLVSCGWHPDRKWI-FSGANDKSICMWELG--GKELECWKG--QRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 318 ------------------~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~~ 374 (540)
...|.+++|+|++++| ++|+.||.|++||+. ++....... .+...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 2269999999999996 889999999999998 655544443 34568999999999999
Q ss_pred EEEEecCCeEEEEECCCceE------EEeecCCceeEEEEcCC---CCEEEEEecCCeEEEEEecCCceeeeEeeCCcCC
Q 009188 375 IITMCKESALLLLDREAKVE------RYIEEDQTITSFSLSRD---NKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS 445 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~~------~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 445 (540)
+++++.+|.+++|++.+... ....|...|.+++|+|+ +++|++++.|+.|++||+++.......+.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 99999999999999877552 45678899999999999 9999999999999999998873333335678776
Q ss_pred eeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC-------------------------CCCCeEEEEeCCCC
Q 009188 446 RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-------------------------HSGAVNCVSWNPAN 500 (540)
Q Consensus 446 ~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------------------h~~~v~~l~~~~~~ 500 (540)
+..+. ++ ++.+|++|+.|+.|++||+.+++++..+.. +...|.+++|+|++
T Consensus 244 v~~~~---~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 244 VSSIC---CG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp EEEEE---EC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred eEEEE---EC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 55543 36 999999999999999999999998887763 24579999999999
Q ss_pred CCEEEEEe-CCCcEEEecC--CCC
Q 009188 501 PHMLASAS-DDRTIRIWGL--KDL 521 (540)
Q Consensus 501 ~~~l~s~~-~Dg~i~iw~~--~~~ 521 (540)
. ++++++ .|+.|++|++ .++
T Consensus 320 ~-~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 320 P-FVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp S-EEEEEETTCSEEEEEEECSSST
T ss_pred C-EEEEEECCCCeEEEEEeccCCC
Confidence 6 777777 8999999999 444
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.6e-28 Score=237.34 Aligned_cols=248 Identities=13% Similarity=0.138 Sum_probs=185.2
Q ss_pred EEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEE-EE
Q 009188 257 IWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWI-FS 335 (540)
Q Consensus 257 iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~ 335 (540)
||++... ..+.....|...|.+++|+|+|++|++|+.++ +++|++.+++.......+ .+..+++.++++.+ ++
T Consensus 3 i~s~~~~---~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITR---NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEE
T ss_pred ccccccc---CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEE
Confidence 4444433 34445688999999999999999999988775 789999888776654433 47778888888877 56
Q ss_pred EeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCc-e-EEEeecCCceeEEEEcCCCC
Q 009188 336 GANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK-V-ERYIEEDQTITSFSLSRDNK 413 (540)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~-~-~~~~~~~~~i~~~~~s~~~~ 413 (540)
++.|+.|++||+.+++....... ...|.+++++++. +++ ..++.|++||+.+. . ...... +...+++++ .
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~ 148 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKV-DAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--G 148 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--T
T ss_pred ECCccEEEEEECCCCcEEEEEEC-CCceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeEEecc--CCceEEEEc--c
Confidence 77889999999988776665543 4489999998764 333 35889999999876 3 111111 445566777 6
Q ss_pred EEEE--EecCCeEEEEEecCCc--------------ee-eeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc-EEEEEC
Q 009188 414 FLLV--NLLNQEIHLWNIEGEV--------------KL-VAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ-VYIWHR 475 (540)
Q Consensus 414 ~l~~--~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~-i~iwd~ 475 (540)
++++ |+.+|.|++||+.+.. .+ ...+.+|...+..+. ++|++++|++|+.||+ |++||+
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~---~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR---LNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE---ECTTSSEEEEEETTCSEEEEEET
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE---ECCCCCEEEEEeCCCCEEEEEEC
Confidence 6666 5789999999998752 12 677888988755544 4899999999999998 999999
Q ss_pred CCCceeEeec-C-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 476 ASCDLIGALP-G-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 476 ~~~~~~~~~~-~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
.+++++..+. + |.+.|++++|+|++. +|++++.|++|++||+.++.
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence 9999999998 5 999999999999996 99999999999999998764
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=7.1e-28 Score=239.87 Aligned_cols=290 Identities=12% Similarity=0.102 Sum_probs=224.0
Q ss_pred CcCcEEEEE---EecCCCeEEEEe--------------CCCcEEEEEeecCC-ceEEEEEecCCCCCeEEEEECcCCCeE
Q 009188 230 HTDEVWFLQ---FSHNGKYLASSS--------------NDRSAIIWEVDLNG-GVTLKHKLSGHQKPVSCVSWSSDDQQL 291 (540)
Q Consensus 230 h~~~V~~~~---~sp~g~~l~tg~--------------~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l 291 (540)
....+..++ |+|++..++..+ .++.+.||.++... .......+..+ ..+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 445677788 888777665432 23334666665422 33445555544 446699999988888
Q ss_pred EEeeCCCcEEEEECCCCeEEEE-----eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEE
Q 009188 292 LTCGVEEAVRRWDVSSGNCLHV-----YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDL 366 (540)
Q Consensus 292 ~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 366 (540)
++++.++.|++||+.+++.... +..|...+.+++|++++..+++++.|+.|++||++++........+...+.++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 8888899999999999998873 44678899999999999999999999999999998877666665666789999
Q ss_pred EEccCCCEEEEEe-cCCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEe--------cCCeEEEEEecCCceee
Q 009188 367 EVTSDGKQIITMC-KESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNL--------LNQEIHLWNIEGEVKLV 436 (540)
Q Consensus 367 ~~~~~~~~l~~~~-~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--------~dg~i~i~d~~~~~~~~ 436 (540)
+|+|+++.+++++ .++.|++||..+.. .........+.+++|+|+++++++++ .|+.|++||+.+. +..
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~ 296 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-KLI 296 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC-cEE
Confidence 9999999886555 79999999998766 44455567799999999999999988 4889999999876 444
Q ss_pred eEeeCCcCCeeEEEeeeccCCCc-EEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC------
Q 009188 437 AKYKGHKRSRFVIRSCFGGLEQA-FIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD------ 509 (540)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------ 509 (540)
..+. +... +..+.++|+++ ++++++.|+.|++||+.+++.+..+. +...+.+++|+|++. .+++++.
T Consensus 297 ~~~~-~~~~---~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~~~ 370 (433)
T 3bws_A 297 DTIG-PPGN---KRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK-YLYVSCRGPNHPT 370 (433)
T ss_dssp EEEE-EEEC---EEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS-EEEEEECCCCCTT
T ss_pred eecc-CCCC---cceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC-EEEEEecCCCccc
Confidence 4442 2222 22233478886 55677899999999999999888887 778899999999996 6666665
Q ss_pred ---------CCcEEEecCCCCCccccc
Q 009188 510 ---------DRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 510 ---------Dg~i~iw~~~~~~~~~~~ 527 (540)
||.|++||+.+++.....
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred cccccccccceEEEEEECCCCcEEEEe
Confidence 579999999998876653
No 122
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=2.1e-28 Score=235.72 Aligned_cols=282 Identities=15% Similarity=0.193 Sum_probs=201.7
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEec--CCCeEEEEeCCCcEEEEEeecCC------ceE
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSH--NGKYLASSSNDRSAIIWEVDLNG------GVT 267 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~l~tg~~dg~i~iwd~~~~~------~~~ 267 (540)
.++..+.++.+.+|+.... ....+....+.+|.+.|++++|+| ++++|++|+.||.|++||+..+. ...
T Consensus 25 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 101 (351)
T 3f3f_A 25 HVATCSSDQHIKVFKLDKD---TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101 (351)
T ss_dssp EEEEEETTSEEEEEEECSS---SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred EEEEeeCCCeEEEEECCCC---CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence 3455667778888865421 122356778899999999999999 69999999999999999997542 125
Q ss_pred EEEEecCCCCCeEEEEECcC--CCeEEEeeCCCcEEEEECCCCeEEEEee-------------cCCCcEEEEEEecC---
Q 009188 268 LKHKLSGHQKPVSCVSWSSD--DQQLLTCGVEEAVRRWDVSSGNCLHVYE-------------KAGLGLVSCGWHPD--- 329 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~--- 329 (540)
....+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+. .+...+.+++|+|+
T Consensus 102 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 181 (351)
T 3f3f_A 102 KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS 181 (351)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSS
T ss_pred eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCC
Confidence 56778899999999999999 9999999999999999998876543332 56778999999997
Q ss_pred CCEEEEEeCCCcEEEEecCCceE--EEeeccccceEEEEEEccCC----CEEEEEecCCeEEEEECCCceEEE--eecCC
Q 009188 330 RKWIFSGANDKSICMWELGGKEL--ECWKGQRTLKISDLEVTSDG----KQIITMCKESALLLLDREAKVERY--IEEDQ 401 (540)
Q Consensus 330 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~----~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~ 401 (540)
+..+++++.++.+.+|+...... ......|...|.+++|+|++ ..+++++.||.|++||+....... .....
T Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 261 (351)
T 3f3f_A 182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT 261 (351)
T ss_dssp CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------
T ss_pred CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc
Confidence 89999999999998888876554 44455677799999999998 899999999999999998754222 22222
Q ss_pred ceeEEEEcCCCCEEEEEe----cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 402 TITSFSLSRDNKFLLVNL----LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 402 ~i~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
.......++....+..+. ....+.+|+.... ..+..+.+|...+..+ .++|++++|++|+.||.|++||+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~---~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGEVWSV---SWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp -----------------------------CCSEEE-EEEEEECTTSSCEEEE---EECSSSCCEEEEETTSCEEEEEECT
T ss_pred ceeccCCCcccccccccccccccceeeeecccccc-cEEEEEecccccEEEE---EEcCCCCEEEEecCCCcEEEEecCc
Confidence 333333344443333333 2334455554443 6677788888875554 3488999999999999999999998
Q ss_pred CceeEee
Q 009188 478 CDLIGAL 484 (540)
Q Consensus 478 ~~~~~~~ 484 (540)
++.+..+
T Consensus 338 ~~~~~~~ 344 (351)
T 3f3f_A 338 SNEFKCM 344 (351)
T ss_dssp TSCEEEE
T ss_pred Ccchhhe
Confidence 8665444
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=237.20 Aligned_cols=230 Identities=11% Similarity=0.054 Sum_probs=184.1
Q ss_pred EECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC---------ce-E
Q 009188 283 SWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG---------KE-L 352 (540)
Q Consensus 283 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~-~ 352 (540)
.+.+++.++++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+..+ .. +
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888876 346777888887 99999999999997763 33 3
Q ss_pred EEeeccccceEEEEEEcc--CCCEEEEEecCCeEEEEECCCceEEE---eecCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009188 353 ECWKGQRTLKISDLEVTS--DGKQIITMCKESALLLLDREAKVERY---IEEDQTITSFSLSRDNKFLLVNLLNQEIHLW 427 (540)
Q Consensus 353 ~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 427 (540)
......+...|.+++++| +++++++++.|+.|++||+.+..... ..+...+.+++|+|++.++++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 334445556899999999 99999999999999999998876322 2345679999999999999999999999999
Q ss_pred EecCCceeeeEeeC-CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC---CCCCeE--EEEeCCCCC
Q 009188 428 NIEGEVKLVAKYKG-HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG---HSGAVN--CVSWNPANP 501 (540)
Q Consensus 428 d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~l~~~~~~~ 501 (540)
|+++.......+.. |...+..+ .++|++.+|++++ |+.|++||+++++.+..+.. |...+. +++|+|++.
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l---~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEV---KFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEE---EECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred ECCCCCCCccEEeccCCCCEEEE---EEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 99988444367777 77765544 3489999999999 55999999999887665554 444444 699999996
Q ss_pred CEEEEEeC-CCcEEEecCCCCC
Q 009188 502 HMLASASD-DRTIRIWGLKDLN 522 (540)
Q Consensus 502 ~~l~s~~~-Dg~i~iw~~~~~~ 522 (540)
+|++++. |+.|++|++.+..
T Consensus 274 -~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 274 -NMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp -EEEEEETTTTEEEEEEECTTT
T ss_pred -EEEEecCCCCcEEEEEEcccc
Confidence 8899888 9999999996654
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-28 Score=258.60 Aligned_cols=231 Identities=17% Similarity=0.323 Sum_probs=196.0
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecC--CCeEEEEeCCCcEEEEEeecCCceEEEEEec
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHN--GKYLASSSNDRSAIIWEVDLNGGVTLKHKLS 273 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~--g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~ 273 (540)
.++.++.++.+.+|+.. .........+.+|.++|++++|+|+ +++|++|+.||.|++||+..+ .......+.
T Consensus 23 ~latg~~dg~I~vwd~~-----~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~ 96 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVE-----GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-RWSQIAVHA 96 (753)
T ss_dssp CEEEEETTTEEEEEEEE-----TTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-EEEEEEEEC
T ss_pred eEEEEECCCcEEEEecC-----CCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-ccccccccc
Confidence 34555667777777533 1134667889999999999999998 999999999999999999864 334667788
Q ss_pred CCCCCeEEEEECcC--CCeEEEeeCCCcEEEEECCCC--eEEEEeecCCCcEEEEEEec-------------CCCEEEEE
Q 009188 274 GHQKPVSCVSWSSD--DQQLLTCGVEEAVRRWDVSSG--NCLHVYEKAGLGLVSCGWHP-------------DRKWIFSG 336 (540)
Q Consensus 274 ~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~ 336 (540)
+|...|.+++|+|+ +..+++|+.||.|++||+.++ .....+..|...|.+++|+| ++..+++|
T Consensus 97 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg 176 (753)
T 3jro_A 97 VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176 (753)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence 99999999999999 999999999999999999887 34456678899999999999 58999999
Q ss_pred eCCCcEEEEecCCc----eEEEeeccccceEEEEEEccC---CCEEEEEecCCeEEEEECCCce-------EEEeecCCc
Q 009188 337 ANDKSICMWELGGK----ELECWKGQRTLKISDLEVTSD---GKQIITMCKESALLLLDREAKV-------ERYIEEDQT 402 (540)
Q Consensus 337 ~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~ 402 (540)
+.||.|++||+++. ........|...|.+++|+|+ +..+++++.||.|++||..+.. .....+...
T Consensus 177 s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 256 (753)
T 3jro_A 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 256 (753)
T ss_dssp ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC
T ss_pred ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc
Confidence 99999999999764 444555677789999999999 8999999999999999998752 222347788
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 403 ITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
|.+++|+|+++++++++.||.|++|++...
T Consensus 257 v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 257 LWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred eEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 999999999999999999999999999854
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=9.3e-26 Score=229.18 Aligned_cols=313 Identities=11% Similarity=0.069 Sum_probs=232.7
Q ss_pred cCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEe--ecCCceEEEEEecCCCC
Q 009188 200 NSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV--DLNGGVTLKHKLSGHQK 277 (540)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~--~~~~~~~~~~~~~~h~~ 277 (540)
...++.+.+|+. ...+++..+..+.. +.+++|+|+|++|++++.|++|.+||+ .+. +....+. +..
T Consensus 155 ~~~d~~V~v~D~-------~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~-~g~ 222 (543)
T 1nir_A 155 LRDAGQIALVDG-------DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK-IGI 222 (543)
T ss_dssp EGGGTEEEEEET-------TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEEEEE-CCS
T ss_pred EcCCCeEEEEEC-------CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEEEEe-cCC
Confidence 334445555532 33566777773333 899999999999999999999999999 443 4555665 455
Q ss_pred CeEEEEECc----CCCeEEEeeC-CCcEEEEECCCCeEEEEeecC-----------CCcEEEEEEecCCCE-EEEEeCCC
Q 009188 278 PVSCVSWSS----DDQQLLTCGV-EEAVRRWDVSSGNCLHVYEKA-----------GLGLVSCGWHPDRKW-IFSGANDK 340 (540)
Q Consensus 278 ~v~~l~~s~----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~-l~~~~~dg 340 (540)
.+..++|+| +|+++++++. +++|.+||..+++++..+..+ ...+..+.++|++.. +++...++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 689999999 9999999884 899999999999999888652 236889999997665 55667789
Q ss_pred cEEEEecCCceEEE-eeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCceEE-Eee-----cCCceeEEEEcCC-
Q 009188 341 SICMWELGGKELEC-WKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREAKVER-YIE-----EDQTITSFSLSRD- 411 (540)
Q Consensus 341 ~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~-~~~-----~~~~i~~~~~s~~- 411 (540)
.|.+||..+..... ........+.++.|+|+|+++++++ .+++|.+||..+.... ... |......+ ++|+
T Consensus 303 ~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp EEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred eEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC
Confidence 99999997643211 1112334677899999999877665 5899999999987632 222 32223333 4677
Q ss_pred CCEEEEEe-cCCeEEEEEecCC------ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee-------CCCcEEEEECCC
Q 009188 412 NKFLLVNL-LNQEIHLWNIEGE------VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS-------EDSQVYIWHRAS 477 (540)
Q Consensus 412 ~~~l~~~~-~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s-------~dg~i~iwd~~~ 477 (540)
+..++++. .+++|.+||+.+. .+.++++.++......+. ++|++++|++++ .+++|.+||+.+
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~---~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK---THPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE---CCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE---cCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 55566654 5799999999871 378888888876544443 389999999987 377999999999
Q ss_pred Ccee-Eee--------cCCCCCeEEEEeCCCCCCEEEEEe----CCCcEEEecCCCCCcccccc
Q 009188 478 CDLI-GAL--------PGHSGAVNCVSWNPANPHMLASAS----DDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 478 ~~~~-~~~--------~~h~~~v~~l~~~~~~~~~l~s~~----~Dg~i~iw~~~~~~~~~~~~ 528 (540)
++.. ..+ ..+...+..+.|+|+|..++++.. .|+.|.|||.+++++.+...
T Consensus 459 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 459 LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp TTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 9877 443 356788999999999985555532 47999999999999887644
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.8e-26 Score=232.04 Aligned_cols=276 Identities=10% Similarity=0.148 Sum_probs=220.7
Q ss_pred EEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC--CCCeEEEEee
Q 009188 238 QFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV--SSGNCLHVYE 315 (540)
Q Consensus 238 ~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 315 (540)
+|+|++.++++++.|++|.+||..++ +...++..+.. +.+++|+|+|++|++++.|+.|.+||+ .+++++..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 37899999999999999999998765 45556663333 899999999999999999999999999 8999988887
Q ss_pred cCCCcEEEEEEec----CCCEEEEEeC-CCcEEEEecCCceEEEeecc-----------ccceEEEEEEccCCCEE-EEE
Q 009188 316 KAGLGLVSCGWHP----DRKWIFSGAN-DKSICMWELGGKELECWKGQ-----------RTLKISDLEVTSDGKQI-ITM 378 (540)
Q Consensus 316 ~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~l-~~~ 378 (540)
+...+..++|+| +|+++++++. +++|.+||..+.+....... ....+..+.+++++..+ ++.
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 455789999999 9999999885 89999999988766554332 12368899999987655 555
Q ss_pred ecCCeEEEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeC----CcCCeeEEE
Q 009188 379 CKESALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKG----HKRSRFVIR 450 (540)
Q Consensus 379 ~~d~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~i~ 450 (540)
..++.|.+||..+.. .....+...+..+.|+|+|+++++++ .++.|.+||..++ ++...+.. |.... ..
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g--~~ 375 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRG--AN 375 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTC--EE
T ss_pred CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCC--cc
Confidence 678999999987643 23445667788999999999877665 5889999999987 67776664 33221 22
Q ss_pred eeeccCC-CcEEEEee-CCCcEEEEECCC-------CceeEeecCCCCCeEEEEeCCCCCCEEEEEe-------CCCcEE
Q 009188 451 SCFGGLE-QAFIASGS-EDSQVYIWHRAS-------CDLIGALPGHSGAVNCVSWNPANPHMLASAS-------DDRTIR 514 (540)
Q Consensus 451 ~~~~~~~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-------~Dg~i~ 514 (540)
+ .+|+ +.++++++ .|++|.+||+.+ ++.+.++.+|.+.+..++++|+++ .|++++ .+++|.
T Consensus 376 ~--~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~-~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 376 F--VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp E--EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC-EEEECCTTCSSHHHHTCEE
T ss_pred c--CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC-cEEEecCCCCCcccCceEE
Confidence 2 2455 66677765 689999999998 899999999999999999999996 777776 278999
Q ss_pred EecCCCCCcc
Q 009188 515 IWGLKDLNVK 524 (540)
Q Consensus 515 iw~~~~~~~~ 524 (540)
+||+.+++..
T Consensus 453 v~d~~~~~~~ 462 (543)
T 1nir_A 453 VFDLKNLDAK 462 (543)
T ss_dssp EEETTCTTSC
T ss_pred EEECCCCCCC
Confidence 9999998876
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.7e-26 Score=227.63 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=219.1
Q ss_pred cCcEEEEEEecCCC-eEEEEe----CCC----cEEEEEe--ecCCceEEEEEecCCCCCeEEEEECc-------------
Q 009188 231 TDEVWFLQFSHNGK-YLASSS----NDR----SAIIWEV--DLNGGVTLKHKLSGHQKPVSCVSWSS------------- 286 (540)
Q Consensus 231 ~~~V~~~~~sp~g~-~l~tg~----~dg----~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~------------- 286 (540)
...|...+|++.|. ++++|+ .|| .+++||+ .++. ......+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT-VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC-EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC-EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 35677788888775 565776 467 8999999 7553 222356788888888777764
Q ss_pred -CCCeEEEeeCC------CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC---cEEEEecCCceEEEee
Q 009188 287 -DDQQLLTCGVE------EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK---SICMWELGGKELECWK 356 (540)
Q Consensus 287 -~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 356 (540)
.+..++.++.+ +.|++||+. +.....+..|...+.+++|+|+|+.|++++.++ .|++||+.+++.....
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 15666666654 789999997 445677778888999999999999999999885 9999999887776544
Q ss_pred ccccceEEEEEEccCCCEEE-EEecCC--eEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEec-CC--eEEEEEe
Q 009188 357 GQRTLKISDLEVTSDGKQII-TMCKES--ALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLL-NQ--EIHLWNI 429 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~~~l~-~~~~d~--~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~ 429 (540)
. +...+.+++|+|||+.++ +++.++ .|++||..++. .....+...+.+++|+|+|++|++++. ++ .|++||+
T Consensus 220 ~-~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 S-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred c-CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 4 345899999999999888 555555 49999998766 455567788999999999999998876 44 6777788
Q ss_pred cCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC---CcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEE
Q 009188 430 EGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED---SQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLAS 506 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 506 (540)
.+.. ...+..+... +....++|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|++. .|++
T Consensus 299 ~~~~--~~~l~~~~~~---~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~-~l~~ 370 (415)
T 2hqs_A 299 NGGA--PQRITWEGSQ---NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGT-MVIY 370 (415)
T ss_dssp TSSC--CEECCCSSSE---EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSS-EEEE
T ss_pred CCCC--EEEEecCCCc---ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCC-EEEE
Confidence 7652 2333333332 3334459999999988865 58999999988874 455554 899999999996 7777
Q ss_pred EeCCC---cEEEecCCCCCccccccCCCce
Q 009188 507 ASDDR---TIRIWGLKDLNVKRKDCHSNGV 533 (540)
Q Consensus 507 ~~~Dg---~i~iw~~~~~~~~~~~~~~~~v 533 (540)
++.|+ .|++||+..+.......+...+
T Consensus 371 ~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v 400 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGRFKARLPATDGQV 400 (415)
T ss_dssp EEEETTEEEEEEEETTSCCEEECCCSSSEE
T ss_pred EEcCCCccEEEEEECCCCcEEEeeCCCCCC
Confidence 77766 7999999866555444554444
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=3e-26 Score=244.21 Aligned_cols=284 Identities=10% Similarity=0.044 Sum_probs=215.2
Q ss_pred cCcEEEEEEecCCCeEEEEeC-CC-----cEEEEEeecCCceEEEEEecCCC------------------------CCeE
Q 009188 231 TDEVWFLQFSHNGKYLASSSN-DR-----SAIIWEVDLNGGVTLKHKLSGHQ------------------------KPVS 280 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~-dg-----~i~iwd~~~~~~~~~~~~~~~h~------------------------~~v~ 280 (540)
...|.+++|||||++|++++. |+ .|++||+..+. ....+..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ---TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC---EEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc---eeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457899999999999999998 88 89999987653 223333332 2378
Q ss_pred EEEECcCCCeEEEeeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc
Q 009188 281 CVSWSSDDQQLLTCGVEEAVRRWDVSSGN--CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ 358 (540)
Q Consensus 281 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 358 (540)
+++|+|||++|++++. +.|++||+.++. ....+..+...+.+++|+|||++|++++. +.|++||+.++........
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCC
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccC
Confidence 9999999999999886 899999998883 34456677788999999999999998874 6899999988877665544
Q ss_pred ccce----------------EEEEEEccCCCEEEEEecCC---------------------------------eEEEEEC
Q 009188 359 RTLK----------------ISDLEVTSDGKQIITMCKES---------------------------------ALLLLDR 389 (540)
Q Consensus 359 ~~~~----------------v~~i~~~~~~~~l~~~~~d~---------------------------------~i~~~d~ 389 (540)
+... +..++|+|||+.|++++.++ .|.+||.
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 3322 47799999999999988765 7889998
Q ss_pred CC-ceEEEe----ecCCceeEEEEcCCCCEEEEEec-----CCeEEEEEecCCceeeeEeeCCcCC-eeEEEeeeccCCC
Q 009188 390 EA-KVERYI----EEDQTITSFSLSRDNKFLLVNLL-----NQEIHLWNIEGEVKLVAKYKGHKRS-RFVIRSCFGGLEQ 458 (540)
Q Consensus 390 ~~-~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~ 458 (540)
.+ +..... .+...+.+++| |||++|+++.. +..|++||+.++ .....+..+... ...+....++|+|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCC
Confidence 87 653222 35678899999 99999998764 467999999876 444444433321 0011223448999
Q ss_pred cEEEEeeCCCcEEEEECC-CCceeEeecCCCCCeEEE-EeCCCCCCEEEEEeCCC--cEEEecCCC-CC
Q 009188 459 AFIASGSEDSQVYIWHRA-SCDLIGALPGHSGAVNCV-SWNPANPHMLASASDDR--TIRIWGLKD-LN 522 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~~~Dg--~i~iw~~~~-~~ 522 (540)
+++++++.||.+.+|.+. ++. ...+..|...|.++ .|+|++..++++++.|+ .+++|++.. +.
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 999999999987787665 445 77888888889887 59999975556777776 899999864 44
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=9.8e-26 Score=222.26 Aligned_cols=278 Identities=12% Similarity=0.122 Sum_probs=214.6
Q ss_pred CCccccCCCcCcCCCCcceE--EecccCcCcEEEEEEecC--------------CCeEEEEeCC------CcEEEEEeec
Q 009188 205 DMSLYTDHQCGRDQIPSRTL--QILQGHTDEVWFLQFSHN--------------GKYLASSSND------RSAIIWEVDL 262 (540)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~sp~--------------g~~l~tg~~d------g~i~iwd~~~ 262 (540)
.+.+|+... ...+.+ ..+.+|...+..+++++. +..++.++.+ +.|++||++.
T Consensus 94 ~i~lwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g 168 (415)
T 2hqs_A 94 AYQLVDTGG-----APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG 168 (415)
T ss_dssp EEEEEECSS-----STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS
T ss_pred EEEEEeCCC-----CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC
Confidence 567775400 123344 568899998888888761 5667666654 7999999873
Q ss_pred CCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC---cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEE-EEeC
Q 009188 263 NGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE---AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIF-SGAN 338 (540)
Q Consensus 263 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~ 338 (540)
. . ...+.+|...|.+++|+|+|++|++++.++ .|++||+.+++.. .+..+...+.+++|+|||+.|+ +++.
T Consensus 169 ~-~---~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~ 243 (415)
T 2hqs_A 169 Y-N---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSK 243 (415)
T ss_dssp C-S---CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred C-C---CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEec
Confidence 3 2 345667899999999999999999999875 8999999999875 4567778899999999999888 6666
Q ss_pred CCc--EEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec-CC--eEEEEECCCce-EEEeecCCceeEEEEcCCC
Q 009188 339 DKS--ICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK-ES--ALLLLDREAKV-ERYIEEDQTITSFSLSRDN 412 (540)
Q Consensus 339 dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~--~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~ 412 (540)
++. |++||+.++....... +...+.+++|+|||+.+++++. ++ .|++||..+.. .....+...+.+++|+|+|
T Consensus 244 ~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 244 TGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDG 322 (415)
T ss_dssp TSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTS
T ss_pred CCCceEEEEECCCCCEEeCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCC
Confidence 654 9999998877655443 4458999999999999998886 44 68888988766 4444566788999999999
Q ss_pred CEEEEEecC---CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC---cEEEEECCCCceeEeecC
Q 009188 413 KFLLVNLLN---QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS---QVYIWHRASCDLIGALPG 486 (540)
Q Consensus 413 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~ 486 (540)
++|++++.+ ..|++||+.+. .. ..+..+. . +....++|+|++|++++.++ .|++||+. +.....+.+
T Consensus 323 ~~l~~~~~~~g~~~i~~~d~~~~-~~-~~l~~~~-~---~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~ 395 (415)
T 2hqs_A 323 KFMVMVSSNGGQQHIAKQDLATG-GV-QVLSSTF-L---DETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA 395 (415)
T ss_dssp SEEEEEEECSSCEEEEEEETTTC-CE-EECCCSS-S---CEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCC
T ss_pred CEEEEEECcCCceEEEEEECCCC-CE-EEecCCC-C---cCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeC
Confidence 999988875 58999999876 33 3344443 2 23334589999999988877 79999986 566778899
Q ss_pred CCCCeEEEEeCCCC
Q 009188 487 HSGAVNCVSWNPAN 500 (540)
Q Consensus 487 h~~~v~~l~~~~~~ 500 (540)
|.+.|.+++|+|..
T Consensus 396 ~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 396 TDGQVKFPAWSPYL 409 (415)
T ss_dssp SSSEEEEEEECCCC
T ss_pred CCCCCcCCcccccc
Confidence 99999999999964
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=9.2e-27 Score=228.27 Aligned_cols=230 Identities=16% Similarity=0.143 Sum_probs=166.9
Q ss_pred cccccCCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEec--------CCCeEEEEeCCCcEEEEEeecCCceE
Q 009188 196 CMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSH--------NGKYLASSSNDRSAIIWEVDLNGGVT 267 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--------~g~~l~tg~~dg~i~iwd~~~~~~~~ 267 (540)
.+...+.|..+.+|+.... .......+..+.||.+.|++++|+| ||++||+|+.|++|+|||+..+ .
T Consensus 103 ~las~~~d~~v~lw~~~~~--~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---~ 177 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNE--TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---G 177 (393)
T ss_dssp EEEEEETTSCEEEEEEETT--EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---E
T ss_pred EEEEEeCCCcEEEEECCCC--ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---c
Confidence 4567788899999964321 1112234567899999999999998 8899999999999999999865 4
Q ss_pred EEEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCCCeEEEEe-------------------------ecCCCcE
Q 009188 268 LKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGNCLHVY-------------------------EKAGLGL 321 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~v 321 (540)
....+.+|..+|.+++|+|++ .+|++++.|++|++||+.+++..... .+|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 555667899999999999987 48999999999999999987654332 2456678
Q ss_pred EEEEEe-cCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEE------------------EEcc--CCCEEEEEec
Q 009188 322 VSCGWH-PDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDL------------------EVTS--DGKQIITMCK 380 (540)
Q Consensus 322 ~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i------------------~~~~--~~~~l~~~~~ 380 (540)
.++.|+ ++++.+++++.|+++++||+...........+...+..+ .+.+ ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 888887 699999999999999999997654433332222222222 2222 3345667788
Q ss_pred CCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 381 ESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 381 d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
||.|++||..++. .....+..+|.+++|+|+|++|++++.+ .+.+|.+.+
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~-Gv~lvrL~g 389 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG-SVLLTRLMG 389 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS-EEEEEEEGG
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEeC
Confidence 9999999998765 5667788999999999999999999855 477776643
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.2e-25 Score=207.28 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=147.3
Q ss_pred cCcEEEEEEecC----CCeEEEEeC--------------------CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECc
Q 009188 231 TDEVWFLQFSHN----GKYLASSSN--------------------DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286 (540)
Q Consensus 231 ~~~V~~~~~sp~----g~~l~tg~~--------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 286 (540)
...|++++|+|+ ++++++++. |+.|++|++...+ +....+.+|...++.++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s~~~~~~~v~~l~fs~ 188 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--GGKENQFLMPPEETILTFAE 188 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--CEEEEEEECCCSSCEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--ceeeeeccCCCceeeEEeec
Confidence 346778888888 777877653 7888888885433 34556678888888888888
Q ss_pred ---CCCeEEEeeCCCcEEEEECCCCeEEEEeecCC---CcEEEEEEecCCCEE------------EEEeCCCcEEEEecC
Q 009188 287 ---DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAG---LGLVSCGWHPDRKWI------------FSGANDKSICMWELG 348 (540)
Q Consensus 287 ---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~iwd~~ 348 (540)
++.+|++++.|++|+|||+.+|++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~ 268 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK 268 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence 77999999999999999999999999998654 367788999999876 567889999999998
Q ss_pred CceEEEee-----ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCcee-EEEEcCCCCEEEEEec
Q 009188 349 GKELECWK-----GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTIT-SFSLSRDNKFLLVNLL 420 (540)
Q Consensus 349 ~~~~~~~~-----~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~-~~~~s~~~~~l~~~~~ 420 (540)
++...... ..+...+.+.. .++..+++++.|++|++||+.++. ..+..|...+. +++|+|+|++|++|+.
T Consensus 269 tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 269 TTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp TTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred CCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 87765432 23333343333 347889999999999999999976 33345665554 6899999999999999
Q ss_pred CCeEEEEEe
Q 009188 421 NQEIHLWNI 429 (540)
Q Consensus 421 dg~i~i~d~ 429 (540)
|++|++||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999996
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.9e-24 Score=206.91 Aligned_cols=291 Identities=9% Similarity=0.140 Sum_probs=206.3
Q ss_pred EEEecCCCe-EEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC-CCcEEEEECCCCeE-EEE
Q 009188 237 LQFSHNGKY-LASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV-EEAVRRWDVSSGNC-LHV 313 (540)
Q Consensus 237 ~~~sp~g~~-l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~ 313 (540)
..|.+++.+ +++++.++.|.+||..++ +....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL---EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC---CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc---ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 345665555 677788899999998765 3344445556666 9999999997777665 88999999999987 777
Q ss_pred eecCCCcEEEEEEecCCCEEEEEeCCC---cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEE-ecCCe-EEEEE
Q 009188 314 YEKAGLGLVSCGWHPDRKWIFSGANDK---SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITM-CKESA-LLLLD 388 (540)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~d~~-i~~~d 388 (540)
+..+..+..+++|+|++++++++..++ .|.+||+.+++........ ..+.+++|+|+|++++++ ..++. +.+|+
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 766666665599999999999655553 8999999887766554443 356899999999866555 45577 99999
Q ss_pred CCCce------EEEeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCcee---eeEeeCCcCCeeEEEeeeccCCC
Q 009188 389 REAKV------ERYIEEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKL---VAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 389 ~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
+.... .........+..++|+|+|+++++++ .++.|.+||+.+. .. +..+...... ..+.++|+|
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~~----~~~~~spdg 232 (331)
T 3u4y_A 158 IDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTNNLP----GTIVVSRDG 232 (331)
T ss_dssp ECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECSSCC----CCEEECTTS
T ss_pred ECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCCCCC----ceEEECCCC
Confidence 87522 12234456689999999999766555 5889999999876 43 4555543222 123348999
Q ss_pred cEEEEe-eCCCcEEEEECCCCce--eEeecCC----C---CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc--
Q 009188 459 AFIASG-SEDSQVYIWHRASCDL--IGALPGH----S---GAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK-- 526 (540)
Q Consensus 459 ~~l~s~-s~dg~i~iwd~~~~~~--~~~~~~h----~---~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~-- 526 (540)
++++.+ ..++.|.+||..+++. +..+..+ . .....++|+|++..+++++..++.|.+||+.+......
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAG 312 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceec
Confidence 976555 4578899999999887 4443322 2 22356899999975556667788999999998765443
Q ss_pred ccCCCceEecc
Q 009188 527 DCHSNGVHYCN 537 (540)
Q Consensus 527 ~~~~~~v~~c~ 537 (540)
.....++.+|.
T Consensus 313 ~~~~g~~~~~~ 323 (331)
T 3u4y_A 313 IEANGGIAICH 323 (331)
T ss_dssp CCCBSCEEECC
T ss_pred ccccCCeEEEC
Confidence 34445566664
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.6e-24 Score=208.29 Aligned_cols=273 Identities=11% Similarity=0.139 Sum_probs=192.2
Q ss_pred eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC-CcEEEEECC--CCe--EEEEeecCCC
Q 009188 245 YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE-EAVRRWDVS--SGN--CLHVYEKAGL 319 (540)
Q Consensus 245 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~iwd~~--~~~--~~~~~~~~~~ 319 (540)
.+++++.|+.|++|+++..+....... ..|...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 344447799999999964433333333 3577789999999999999988876 899999997 555 334454444
Q ss_pred cEEEEEEecCCCEEEEEeC-CCcEEEEecC---CceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCC-ce
Q 009188 320 GLVSCGWHPDRKWIFSGAN-DKSICMWELG---GKELECWKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREA-KV 393 (540)
Q Consensus 320 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~-~~ 393 (540)
.+..++|+|+++++++++. ++.|.+||+. ........... ..+.+++|+|+++.+++++ .++.|.+||+.+ ..
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7889999999998877765 7889999993 33333333333 3588899999999888887 899999999986 43
Q ss_pred EE------Ee-ecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecC--Cc-eeeeEeeC----CcCCeeEEEeeeccCCC
Q 009188 394 ER------YI-EEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEG--EV-KLVAKYKG----HKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 394 ~~------~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~--~~-~~~~~~~~----~~~~~~~i~~~~~~~~~ 458 (540)
.. .. .....+..++|+|+++++++++ .++.|.+|++.. +. ........ +..... ...+.++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~s~dg 242 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW-AADIHITPDG 242 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC-EEEEEECTTS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC-ccceEECCCC
Confidence 21 12 2345788999999999776655 789999999954 21 11222221 111112 2233448899
Q ss_pred cEEE-EeeCCCcEEEEECC--C--CceeEeecCCCCCeEEEEeCCCCCCEEEEEe-CCCcEEEec--CCCCCc
Q 009188 459 AFIA-SGSEDSQVYIWHRA--S--CDLIGALPGHSGAVNCVSWNPANPHMLASAS-DDRTIRIWG--LKDLNV 523 (540)
Q Consensus 459 ~~l~-s~s~dg~i~iwd~~--~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~Dg~i~iw~--~~~~~~ 523 (540)
++++ ++..++.|++||+. + .+.+..+..+.. +.+++|+|++. .|++++ .|+.|.+|+ ..++++
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~-~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK-YLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS-EEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC-EEEEecCCCCeEEEEEEcCCCcee
Confidence 8777 45578999999998 3 345555655544 89999999997 555555 789999994 446644
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1.3e-23 Score=197.31 Aligned_cols=252 Identities=14% Similarity=0.130 Sum_probs=190.4
Q ss_pred EEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-CeEEEEeecC-CCcEEEEE
Q 009188 248 SSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-GNCLHVYEKA-GLGLVSCG 325 (540)
Q Consensus 248 tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~ 325 (540)
.++.|+.|++||+..+ .. ..+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~---~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR---KM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTT---EE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCC---ce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence 3467899999998754 22 24556889999999999999999986 78999999999 8877766555 36788999
Q ss_pred EecCCCEEEEEeC--CCc--EEEEecCCceEEEeeccccceEEEEEEccCCCEEE-EEecCCeEEEEEC--CCce-EEEe
Q 009188 326 WHPDRKWIFSGAN--DKS--ICMWELGGKELECWKGQRTLKISDLEVTSDGKQII-TMCKESALLLLDR--EAKV-ERYI 397 (540)
Q Consensus 326 ~~~~~~~l~~~~~--dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~i~~~d~--~~~~-~~~~ 397 (540)
|+|++++|++++. ++. |..|+..++......... .+..++|+|+++.++ ++..++.+.+|++ .+.. ....
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 9999999999983 344 555555555544443333 488899999999887 6778998888885 3333 4455
Q ss_pred ecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC---------
Q 009188 398 EEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED--------- 467 (540)
Q Consensus 398 ~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d--------- 467 (540)
.+...+.+++|+|+++++++++ .++.+.+|++.........+..+... +....++|++++|++++.+
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG---DWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE---EEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc---cCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 6677899999999999888776 48899999987433455555555433 3344558999999888876
Q ss_pred --CcEEEEECCCCce--eEeecCCCCCeEEEEeCCCCCCEEEEEeCC
Q 009188 468 --SQVYIWHRASCDL--IGALPGHSGAVNCVSWNPANPHMLASASDD 510 (540)
Q Consensus 468 --g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 510 (540)
+.|++||+.+++. +..+.+|...+.+++|+|++. .|++++.|
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~ 292 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD-EFAYVRYF 292 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS-EEEEEEEC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCCC-EEEEEEec
Confidence 5699999998876 444557888999999999997 56655544
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=2.6e-23 Score=220.24 Aligned_cols=280 Identities=8% Similarity=0.050 Sum_probs=208.0
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC----
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS---- 307 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~---- 307 (540)
..|.+++|||| +.++.+. ++.|++||+..+ .. ..+..+...+.+++|+|||+.|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~---~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLAR---KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTT---EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCC---ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 57999999999 6666654 599999998754 22 3345667788999999999999985 689999999998
Q ss_pred -CeEEEEeecCCCc--------------EEEEEEecCCCEEEEEe---------------------------------CC
Q 009188 308 -GNCLHVYEKAGLG--------------LVSCGWHPDRKWIFSGA---------------------------------ND 339 (540)
Q Consensus 308 -~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d 339 (540)
++.......+... +.++.|+|||++|++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 8766544443332 47899999999999987 34
Q ss_pred CcEEEEecCCceEEEeec--cccceEEEEEEccCCCEEEEEecCC-----eEEEEECCCc-eEEE-e--ecCC---ceeE
Q 009188 340 KSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKES-----ALLLLDREAK-VERY-I--EEDQ---TITS 405 (540)
Q Consensus 340 g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~-----~i~~~d~~~~-~~~~-~--~~~~---~i~~ 405 (540)
..|++||+.++....... .+...+.+++|+|||+.+++++.++ .|.+||..++ .... . .... .+.+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 679999998887655442 3456799999999999999988775 8999999887 4222 2 1222 2467
Q ss_pred EEEcC--CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC-CC----cEEEEECCCC
Q 009188 406 FSLSR--DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE-DS----QVYIWHRASC 478 (540)
Q Consensus 406 ~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~-dg----~i~iwd~~~~ 478 (540)
++|+| +|++++++..++.+++|++.........+..+...+. ....++++++.|+.++. ++ .|+.||..++
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~--~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT--NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE--EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE--eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 89999 9999999999999999988733355566665544432 22345889987765544 44 6777888777
Q ss_pred ceeEeecCCCCCeEEEEeCCCCCCEEEEEeCC---CcEEEecCCCCC
Q 009188 479 DLIGALPGHSGAVNCVSWNPANPHMLASASDD---RTIRIWGLKDLN 522 (540)
Q Consensus 479 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D---g~i~iw~~~~~~ 522 (540)
+ ...+. |...+.+++|+|++..++++++.+ +.|++||+.+++
T Consensus 393 ~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 393 K-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp C-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred C-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6 44444 677899999999997444444444 569999998876
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=3.1e-22 Score=193.22 Aligned_cols=269 Identities=10% Similarity=0.074 Sum_probs=204.5
Q ss_pred CcCcEEEEEEecCCCeEEEEeC-------CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEE
Q 009188 230 HTDEVWFLQFSHNGKYLASSSN-------DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVR 301 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~-------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~ 301 (540)
....+..++|+|+|+++++++. ++.|.+||..++. ....+.. ...+..++|+|+|++++++ ..++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE---VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC---EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe---EEEEEec-CCCcceEEECCCCCEEEEEecCCCEEE
Confidence 4567889999999999888774 4689999987653 3333332 3447789999999966554 5578999
Q ss_pred EEECCCCeEEEEeecCCC---------cEEEEEEecCCCEEEEEe--CCCcEEEEecCCceEEEeeccccceEEEEEEcc
Q 009188 302 RWDVSSGNCLHVYEKAGL---------GLVSCGWHPDRKWIFSGA--NDKSICMWELGGKELECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 370 (540)
+||..+++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||..+++...........+..++|+|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC
Confidence 999999999888876532 278899999999888776 478899999998877766653444578899999
Q ss_pred CCCEEEEEecCCeEEEEECCCceEE-Eee-----cCCceeEEEEcCCCCEEEEEec-CCeEEEEEecCCceeeeEeeCCc
Q 009188 371 DGKQIITMCKESALLLLDREAKVER-YIE-----EDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~~~~~-~~~-----~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
+|+.+++++.++.+.+||..+.... ... +...+..++|+|+++++++++. ++.|.+||..+. +....+....
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~ 273 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAAPE 273 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEECSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCC
Confidence 9999999999999999999887632 222 3445778999999998777765 489999999877 5555555433
Q ss_pred CCeeEEEeeeccCCCcEEEEee-CCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 444 RSRFVIRSCFGGLEQAFIASGS-EDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 444 ~~~~~i~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
.. ...++++++++++++ .++.|.+||..+++.+..+..+ ..+.+++|+|++..++++...
T Consensus 274 ~~-----~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SL-----AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CC-----CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred Cc-----eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 21 123378888655554 6899999999999998888744 478999999999744444433
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.6e-23 Score=200.77 Aligned_cols=271 Identities=10% Similarity=0.045 Sum_probs=199.3
Q ss_pred CeEEEEeCCCcEEEEEeecCCceEEEEEec-CCCC-CeEEEEECcCCCeEE-EeeCCCcEEEEECCCCeEEEEeecCC--
Q 009188 244 KYLASSSNDRSAIIWEVDLNGGVTLKHKLS-GHQK-PVSCVSWSSDDQQLL-TCGVEEAVRRWDVSSGNCLHVYEKAG-- 318 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~h~~-~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~-- 318 (540)
+++++++.++.|.+||..++ +....+. ++.. .+..++|+|+++.++ +++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 47899999999999998755 3444443 2222 478899999998665 55567899999999999887765321
Q ss_pred ---CcEEEEEEecCCCEEEEEe------------CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCe
Q 009188 319 ---LGLVSCGWHPDRKWIFSGA------------NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 319 ---~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
..+.+++|+|+++++++++ .++.|.+||+.+++....... ...+.+++|+|+|++++++ ++.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe
Confidence 2566899999999998886 579999999988766554433 2357788999999988887 689
Q ss_pred EEEEECCCceEE-EeecCCceeEEEEcCCCCEEEEEecCC------------------------eEEEEEecCCceeeeE
Q 009188 384 LLLLDREAKVER-YIEEDQTITSFSLSRDNKFLLVNLLNQ------------------------EIHLWNIEGEVKLVAK 438 (540)
Q Consensus 384 i~~~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg------------------------~i~i~d~~~~~~~~~~ 438 (540)
+.+||..+.... ..........+.|+|+++.+++.+..+ .|.+||+.+.......
T Consensus 156 i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 999999887632 222222122347899988766554332 4689998876333223
Q ss_pred eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 439 YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 439 ~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
+..+..... .+.++|++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++. .+++++.|+.|++||+
T Consensus 236 ~~~~~~~~~---~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 236 VRIMDVFYF---STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGS-TVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEECSSCEE---EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSC-EEEEESBSSEEEEEET
T ss_pred cCCCCCcee---eEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCC-EEEEEcCCCcEEEEEC
Confidence 333333222 23348999999888 79999999999998887774 35678999999996 7777788999999999
Q ss_pred CCCCccccc
Q 009188 519 KDLNVKRKD 527 (540)
Q Consensus 519 ~~~~~~~~~ 527 (540)
.+++.....
T Consensus 309 ~~~~~~~~~ 317 (337)
T 1pby_B 309 ETLEKKGQV 317 (337)
T ss_dssp TTCCEEEEE
T ss_pred cCCcEEEEE
Confidence 999877653
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=4e-24 Score=227.13 Aligned_cols=281 Identities=10% Similarity=0.071 Sum_probs=199.1
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC---CeEEEEECcCCCeEEEeeCC---------CcE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK---PVSCVSWSSDDQQLLTCGVE---------EAV 300 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~d---------g~i 300 (540)
.+.+++|+|||+++++ +.||+|++||..++. ....+..|.. .|.+++|||||++|++++.+ +.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~---~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT---STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC---CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc---EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 4668899999998776 789999999998763 3344556654 49999999999999999764 778
Q ss_pred EEEECCCCeEEEEeec---CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccce---------------
Q 009188 301 RRWDVSSGNCLHVYEK---AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLK--------------- 362 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------- 362 (540)
.+||+.+++. ..+.. +...+..++|+|||+.|+.++. +.|++||+.++........+...
T Consensus 94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 8999999876 33332 3334888999999999999886 78999999887666554433222
Q ss_pred ---EEEEEEccCCCEEEEEecCC----------------------------------eEEEEECCCce--EEEeec----
Q 009188 363 ---ISDLEVTSDGKQIITMCKES----------------------------------ALLLLDREAKV--ERYIEE---- 399 (540)
Q Consensus 363 ---v~~i~~~~~~~~l~~~~~d~----------------------------------~i~~~d~~~~~--~~~~~~---- 399 (540)
+.+++|+|||+.|++++.++ .|++||..+.. .....+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 27899999999999887543 79999998765 222222
Q ss_pred --CCceeEEEEcCCCCEEEEEecC----CeEEEEEecCCceeeeEeeCC-cCCeeEE-EeeeccCCCcEEEE--eeCCC-
Q 009188 400 --DQTITSFSLSRDNKFLLVNLLN----QEIHLWNIEGEVKLVAKYKGH-KRSRFVI-RSCFGGLEQAFIAS--GSEDS- 468 (540)
Q Consensus 400 --~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~-~~~~~~i-~~~~~~~~~~~l~s--~s~dg- 468 (540)
...+.+++|+|||+++++.... ..|++||+.++ .....+..+ ....... ....++|+|+.|+. +..++
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 5678899999999988776543 57999999876 343333222 2211100 12344899987664 45666
Q ss_pred -----cEEEEE-CCCCc--eeEeecCCCCCeEE-EEeCCCCCCEEEEEeCC--CcEEEecCCC
Q 009188 469 -----QVYIWH-RASCD--LIGALPGHSGAVNC-VSWNPANPHMLASASDD--RTIRIWGLKD 520 (540)
Q Consensus 469 -----~i~iwd-~~~~~--~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~D--g~i~iw~~~~ 520 (540)
.|++|| ..++. ....+..+...+.. ++|+|++..+++++..+ +.+++|++..
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 577788 44444 14555544445554 69999997433445555 8899999864
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=3.6e-22 Score=192.40 Aligned_cols=273 Identities=10% Similarity=0.124 Sum_probs=188.1
Q ss_pred CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC---CCcEEEEECCCCe--EEEEeecCCCcEEEEE
Q 009188 251 NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV---EEAVRRWDVSSGN--CLHVYEKAGLGLVSCG 325 (540)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~ 325 (540)
.++.|.+|+++.............+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 356799999886433222223344556788899999999 555554 6899999998776 3444445667788999
Q ss_pred EecCCCEEEEEe-CCCcEEEEecC-CceEEE---eecc--------ccceEEEEEEccCCCEEEEEecCCeEEEEECC-C
Q 009188 326 WHPDRKWIFSGA-NDKSICMWELG-GKELEC---WKGQ--------RTLKISDLEVTSDGKQIITMCKESALLLLDRE-A 391 (540)
Q Consensus 326 ~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~---~~~~--------~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~-~ 391 (540)
|+|+|++|++++ .++.|.+|++. ++.... .... ....+.+++|+|+|+.+++...++.|.+|++. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 999999998888 67899999995 322222 1111 11248899999999966666678899999998 3
Q ss_pred ceEE-----EeecCCceeEEEEcCCCCEEEEE-ecCCeEEEEEecCC-ce--eeeEeeCCcCC---eeEEEeeeccCCCc
Q 009188 392 KVER-----YIEEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGE-VK--LVAKYKGHKRS---RFVIRSCFGGLEQA 459 (540)
Q Consensus 392 ~~~~-----~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~-~~--~~~~~~~~~~~---~~~i~~~~~~~~~~ 459 (540)
+... .......+..++|+|+|++++++ ..++.|.+|++... .. ....+...... ......+.++|+|+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 3321 12233467889999999976664 56889999998741 12 22233222211 11233444599999
Q ss_pred EE-EEeeCCCcEEEEECCC---CceeEeecCCCCCeEEEEeCCCCCCEEEEEe-CCCcEEEe--cCCCCCccc
Q 009188 460 FI-ASGSEDSQVYIWHRAS---CDLIGALPGHSGAVNCVSWNPANPHMLASAS-DDRTIRIW--GLKDLNVKR 525 (540)
Q Consensus 460 ~l-~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~Dg~i~iw--~~~~~~~~~ 525 (540)
+| ++...++.|.+|++.. .+.+..+..+...+.+++|+|++. .|++++ .++.|.+| |..++++..
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA-FVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC-EEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 77 4556689999999872 345666676777789999999997 555555 56899999 667777664
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=4e-23 Score=220.02 Aligned_cols=281 Identities=12% Similarity=0.096 Sum_probs=208.9
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH 312 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 312 (540)
.|.+++|||||++|++++. +.|.+||+..+... ....+..|...+.+++|+|||++|++++ ++.|++||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 4889999999999999987 89999999754100 1234667888899999999999999987 5689999999988766
Q ss_pred EeecCCCc----------------EEEEEEecCCCEEEEEeCCC---------------------------------cEE
Q 009188 313 VYEKAGLG----------------LVSCGWHPDRKWIFSGANDK---------------------------------SIC 343 (540)
Q Consensus 313 ~~~~~~~~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~ 343 (540)
....+... +.+++|+|||++|++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55444332 47799999999999987765 789
Q ss_pred EEecCC-ceEEEeec--cccceEEEEEEccCCCEEEEEec-----CCeEEEEECCCceEE-Ee-ecCC----ceeEEEEc
Q 009188 344 MWELGG-KELECWKG--QRTLKISDLEVTSDGKQIITMCK-----ESALLLLDREAKVER-YI-EEDQ----TITSFSLS 409 (540)
Q Consensus 344 iwd~~~-~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~-~~-~~~~----~i~~~~~s 409 (540)
+||+.+ +....... .+...+..++| |||+.+++++. +..|++||..+.... .. .+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999987 76655443 35568999999 99999997764 567999999886622 22 2222 45689999
Q ss_pred CCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEE-EeeCCC--cEEEEECCC-CceeEeec
Q 009188 410 RDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA-SGSEDS--QVYIWHRAS-CDLIGALP 485 (540)
Q Consensus 410 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~s~dg--~i~iwd~~~-~~~~~~~~ 485 (540)
|+|+++++++.+|.+.+|.+..... ...+..+...+. ....++++++.++ +++.++ .+++|++.. +.....+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~--~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD--ELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE--EEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE--eEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999988999999888888764334 556665554432 2223588998765 455555 899999864 66566776
Q ss_pred CCCCCeEEEEeCCCCCCEEEEEeCC---CcEEEecCCCC
Q 009188 486 GHSGAVNCVSWNPANPHMLASASDD---RTIRIWGLKDL 521 (540)
Q Consensus 486 ~h~~~v~~l~~~~~~~~~l~s~~~D---g~i~iw~~~~~ 521 (540)
. ...+.+++|+|++..++++++.. +.+.+|+...+
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 5 67789999999997555555544 45888887544
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=6.4e-23 Score=217.23 Aligned_cols=283 Identities=11% Similarity=0.088 Sum_probs=201.6
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEEeecCCce-EEEEEecC--------------CCCCeEEEEECcCCCeEEEeeCCC
Q 009188 234 VWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGV-TLKHKLSG--------------HQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 234 V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~-~~~~~~~~--------------h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
+..+.|+ |..+++++.|+ | +||+.++... ........ +...|.+++|+|+ ..++.+ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 4457777 66777778888 8 9999876431 12211110 1156999999999 666655 459
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-----ceEEEeeccccce-----------
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-----KELECWKGQRTLK----------- 362 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~----------- 362 (540)
.|++||+.+++..... .+...+.+++|+|||+.|+++ .++.|++||+.+ +............
T Consensus 102 ~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 9999999988765544 556678889999999999985 679999999987 6665544433332
Q ss_pred ---EEEEEEccCCCEEEEEe---------------------------------cCCeEEEEECCCceEEEe----ecCCc
Q 009188 363 ---ISDLEVTSDGKQIITMC---------------------------------KESALLLLDREAKVERYI----EEDQT 402 (540)
Q Consensus 363 ---v~~i~~~~~~~~l~~~~---------------------------------~d~~i~~~d~~~~~~~~~----~~~~~ 402 (540)
+.++.|+|||++|++++ .+..|++||+.++..... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 47899999999999987 446799999988774332 34567
Q ss_pred eeEEEEcCCCCEEEEEecCC-----eEEEEEecCCceeeeEeeC-CcCCeeEEEeeeccC--CCcEEEEeeCCCcEEEEE
Q 009188 403 ITSFSLSRDNKFLLVNLLNQ-----EIHLWNIEGEVKLVAKYKG-HKRSRFVIRSCFGGL--EQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~l~s~s~dg~i~iwd 474 (540)
+.+++|+|+|+.+++++.++ .|.+||+.++......... +......+....++| +|+++++++.||.+++|+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 89999999999999988776 8999999876222222211 111110112234488 999999999999999998
Q ss_pred CC-CCceeEeecCCCCCeEE-EEeCCCCCCEEEEEeCCC----cEEEecCCCCCcc
Q 009188 475 RA-SCDLIGALPGHSGAVNC-VSWNPANPHMLASASDDR----TIRIWGLKDLNVK 524 (540)
Q Consensus 475 ~~-~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~Dg----~i~iw~~~~~~~~ 524 (540)
+. ++..+..+..|...+.+ ++|+|++..++++++.++ .|..|++.+++..
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 395 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK 395 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce
Confidence 76 67778888888888887 799999975556666665 6777888777643
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=6.9e-23 Score=225.74 Aligned_cols=294 Identities=9% Similarity=0.083 Sum_probs=191.2
Q ss_pred ceEEecccCcCcEEEEEEecCCCeEEEEeCC------CcEEEEEeecCCceEEEEEecCCCCCe-------EEEEECcCC
Q 009188 222 RTLQILQGHTDEVWFLQFSHNGKYLASSSND------RSAIIWEVDLNGGVTLKHKLSGHQKPV-------SCVSWSSDD 288 (540)
Q Consensus 222 ~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~l~~s~~~ 288 (540)
...+.+.+|.+.|.+++|||||++||+++.+ ..|++|++..+ . ...+..|...+ .+++|+|||
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g---~-~~~lt~~~~~~~~~~~~~~~~~~SpDg 118 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG---E-IKRITYFSGKSTGRRMFTDVAGFDPDG 118 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT---E-EEECCCCCEEEETTEECSEEEEECTTC
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC---C-eEEcccCCCcccccccccccccCCCCC
Confidence 3456778899999999999999999988643 36888887644 2 45678888888 999999999
Q ss_pred CeEEEeeCC------CcEEEEECCCCeEEE-------------------------------------------------E
Q 009188 289 QQLLTCGVE------EAVRRWDVSSGNCLH-------------------------------------------------V 313 (540)
Q Consensus 289 ~~l~s~~~d------g~i~iwd~~~~~~~~-------------------------------------------------~ 313 (540)
+++++++.+ ..|.+|++.+++... .
T Consensus 119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~ 198 (1045)
T 1k32_A 119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK 198 (1045)
T ss_dssp CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence 977777644 357888876654321 1
Q ss_pred eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC--CceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 314 YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG--GKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
+..|...+.++.|+++ ..+++++.++.+.+|.+. ++......... .+...+|+|||+.++.+ .++.|++||...
T Consensus 199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 2234556667777776 555666777777777653 33332222221 23334555666555554 355555555533
Q ss_pred ceEEEee------------cCCceeEEEEc-CCCCEEEEEe---------------------------------------
Q 009188 392 KVERYIE------------EDQTITSFSLS-RDNKFLLVNL--------------------------------------- 419 (540)
Q Consensus 392 ~~~~~~~------------~~~~i~~~~~s-~~~~~l~~~~--------------------------------------- 419 (540)
....... +...+.+++|+ |+|+.+++++
T Consensus 275 ~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~ 354 (1045)
T 1k32_A 275 EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHG 354 (1045)
T ss_dssp CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEE
T ss_pred eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEE
Confidence 2211111 12255555555 5555554444
Q ss_pred -cCCeEE-EEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeC
Q 009188 420 -LNQEIH-LWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN 497 (540)
Q Consensus 420 -~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 497 (540)
.++.+. +||+.+. .. ..+.++... +....++|+|++|++++.++.|++||+.+++....+.+|.+.+.+++|+
T Consensus 355 s~~~~l~~~~d~~~~-~~-~~l~~~~~~---~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 355 TREGDFLGIYDYRTG-KA-EKFEENLGN---VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp ETTEEEEEEEETTTC-CE-EECCCCCCS---EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred ECCCceEEEEECCCC-Cc-eEecCCccc---eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 333444 4444433 11 122233333 2334459999999999999999999999999888887899999999999
Q ss_pred CCCCCEEEEEeCCC----------cEEEecCCCCCccccccC
Q 009188 498 PANPHMLASASDDR----------TIRIWGLKDLNVKRKDCH 529 (540)
Q Consensus 498 ~~~~~~l~s~~~Dg----------~i~iw~~~~~~~~~~~~~ 529 (540)
|+|. .|++++.++ .|++||+.+++......+
T Consensus 430 pDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 430 DNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp TTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred CCCC-eEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC
Confidence 9996 777766544 899999998874433333
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.2e-22 Score=223.88 Aligned_cols=285 Identities=13% Similarity=0.051 Sum_probs=225.6
Q ss_pred eEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 302 (540)
....+.+|.+.+.++.|+++ .++++++.|+.+.||.++..+. ....+..|. .+...+|+|+|+.|+++ .++.|.+
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~ 269 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYI 269 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--cceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEE
Confidence 34455899999999999998 6777888889999999875332 123445554 46678999999999987 4899999
Q ss_pred EECCCCeEEEEeec-----------CCCcEEEEEEe-cCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEcc
Q 009188 303 WDVSSGNCLHVYEK-----------AGLGLVSCGWH-PDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 303 wd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 370 (540)
||+.... +..+.. +...+.+++|+ |||+.+++++ ++.|.+|++.++............+..++|+
T Consensus 270 ~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 270 FNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp ECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-
T ss_pred ecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-
Confidence 9995444 335544 23468899999 9999999888 7899999998877665444333378999999
Q ss_pred CCCEEEEEecCCeEE-EEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeE
Q 009188 371 DGKQIITMCKESALL-LLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFV 448 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~-~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 448 (540)
||+.++.++.++.+. +||..+.. .....+...+..++|+|+|++|++++.++.|++||+.++ .......++......
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITD 425 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCC
T ss_pred CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccc
Confidence 999999999888898 99988765 333356678999999999999999999999999999876 555555566655433
Q ss_pred EEeeeccCCCcEEEEeeCCC----------cEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 449 IRSCFGGLEQAFIASGSEDS----------QVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
+ .++|+|++|++++.++ .|++||+.+++ ...+..|...+.+++|+|+|. .|++++.++...+|+.
T Consensus 426 ~---~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~-~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 426 F---TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp E---EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECS
T ss_pred e---EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC-EEEEEecccCCcCcch
Confidence 3 3489999998887654 89999999887 677888888999999999996 8888898888888886
Q ss_pred CCC
Q 009188 519 KDL 521 (540)
Q Consensus 519 ~~~ 521 (540)
...
T Consensus 501 ~~~ 503 (1045)
T 1k32_A 501 VVL 503 (1045)
T ss_dssp SSS
T ss_pred hcc
Confidence 544
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.8e-22 Score=214.43 Aligned_cols=309 Identities=13% Similarity=0.102 Sum_probs=207.6
Q ss_pred CCCCCCccccCCCcCcCCCCcceEEecccCcC---cEEEEEEecCCCeEEEEeCC---------CcEEEEEeecCCceEE
Q 009188 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTD---EVWFLQFSHNGKYLASSSND---------RSAIIWEVDLNGGVTL 268 (540)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~sp~g~~l~tg~~d---------g~i~iwd~~~~~~~~~ 268 (540)
+.++.+.+|+.. ..+....+.+|.. .|.+++|||||++|++++.+ +.+.+||+..+.. ..
T Consensus 34 ~~dg~i~~~d~~-------~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~ 105 (723)
T 1xfd_A 34 EQKGTVRLWNVE-------TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QS 105 (723)
T ss_dssp CSSSCEEEBCGG-------GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EE
T ss_pred eCCCCEEEEECC-------CCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Ee
Confidence 344455555432 2345566677765 49999999999999999874 7788999986532 22
Q ss_pred EEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE------------------EEEEEecCC
Q 009188 269 KHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL------------------VSCGWHPDR 330 (540)
Q Consensus 269 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~ 330 (540)
+....+|...+..++|||||+.|++++. +.|++||+.+++.......+...+ .+++|+|||
T Consensus 106 l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg 184 (723)
T 1xfd_A 106 LDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG 184 (723)
T ss_dssp CCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred ccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC
Confidence 2223345556889999999999999886 789999999988776665543333 789999999
Q ss_pred CEEEEEeCCC----------------------------------cEEEEecCCceE-EEeecc-----ccceEEEEEEcc
Q 009188 331 KWIFSGANDK----------------------------------SICMWELGGKEL-ECWKGQ-----RTLKISDLEVTS 370 (540)
Q Consensus 331 ~~l~~~~~dg----------------------------------~i~iwd~~~~~~-~~~~~~-----~~~~v~~i~~~~ 370 (540)
+.|++++.++ .|++||+.++.. ...... +...+..++|+|
T Consensus 185 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp 264 (723)
T 1xfd_A 185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT 264 (723)
T ss_dssp SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS
T ss_pred CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC
Confidence 9999887553 799999987764 333322 245789999999
Q ss_pred CCCEEEEEec----CCeEEEEECCCceEEE-e--ecCCce----eEEEEcCCCCEEEEE--ecCC------eEEEEE-ec
Q 009188 371 DGKQIITMCK----ESALLLLDREAKVERY-I--EEDQTI----TSFSLSRDNKFLLVN--LLNQ------EIHLWN-IE 430 (540)
Q Consensus 371 ~~~~l~~~~~----d~~i~~~d~~~~~~~~-~--~~~~~i----~~~~~s~~~~~l~~~--~~dg------~i~i~d-~~ 430 (540)
||+.+++... +..|++||..++.... . .+...+ ..++|+|+|+.|+.. ..++ .|.+|| ..
T Consensus 265 Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~ 344 (723)
T 1xfd_A 265 STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (723)
T ss_dssp SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccC
Confidence 9998877653 3579999998766222 1 223333 378999999977754 4566 466666 33
Q ss_pred CCce--eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC---CcEEEEECCCCc--eeEeecC---CCCCeEEEEeCCCC
Q 009188 431 GEVK--LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED---SQVYIWHRASCD--LIGALPG---HSGAVNCVSWNPAN 500 (540)
Q Consensus 431 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~--~~~~~~~---h~~~v~~l~~~~~~ 500 (540)
+. . ....+...... ......++|+|+.|+..+.+ +.+++|++.... ....+.. |...+..++|+|++
T Consensus 345 ~~-~~~~~~~l~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 345 NS-SNDNIQSITSGDWD--VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp CS-SSCCCCBSCCSSSC--EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred CC-CccceeEeecCCeE--EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 32 2 13333322222 12223458999998766555 789999876432 3344543 67789999999999
Q ss_pred CCEEEEEeCCC--cEEEecCCCC
Q 009188 501 PHMLASASDDR--TIRIWGLKDL 521 (540)
Q Consensus 501 ~~~l~s~~~Dg--~i~iw~~~~~ 521 (540)
..++++++..+ ...+++..++
T Consensus 422 ~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 422 DFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp SEEEEECCSSSSCCEEEEETTTC
T ss_pred CEEEEEccCCCCCeEEEEECCCC
Confidence 75555555444 2334444333
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.4e-22 Score=209.58 Aligned_cols=271 Identities=13% Similarity=0.046 Sum_probs=198.2
Q ss_pred cCcEEEEEEecCCCeEEEEeC-CCcEEEEEeecCCceEEEEEecCCC-CCeEEEEECcCCCeEEEeeC---CCcEEEEEC
Q 009188 231 TDEVWFLQFSHNGKYLASSSN-DRSAIIWEVDLNGGVTLKHKLSGHQ-KPVSCVSWSSDDQQLLTCGV---EEAVRRWDV 305 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~ 305 (540)
..+|++++|+|||++||+++. ||+++||+++.+ .. ..+..|. ..+.+++|+|| +.+++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 557999999999999999887 999999998643 22 3455555 68999999999 77777765 454566544
Q ss_pred CC---CeEEEEeecCCCcEEEEEEecCCCE-EEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 306 SS---GNCLHVYEKAGLGLVSCGWHPDRKW-IFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 306 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
.. +... .+.... .+...+|+|+++. +++.+.++.+.+||+.++........+. .+++|+|||+.+++++.+
T Consensus 96 ~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp ETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred eccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence 32 3323 332222 3446688888863 3344445556699998887766655443 789999999999988876
Q ss_pred ----CeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCC--eEEEEEecCCceeeeEeeCCcCCeeE-----E
Q 009188 382 ----SALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQ--EIHLWNIEGEVKLVAKYKGHKRSRFV-----I 449 (540)
Q Consensus 382 ----~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~-----i 449 (540)
+.|++||..++. .....+...+.+++|+|||+.|+++..++ .|++||+.++ ... .+..+...... .
T Consensus 171 ~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-SVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp ETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-CEE-ECCCSCSHHHHHCCSEE
T ss_pred CCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-cEE-EccCCCcChhhhhhccc
Confidence 789999988766 55566778899999999999999888888 8999999876 333 55555433211 1
Q ss_pred EeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCc---EEEecCCC
Q 009188 450 RSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRT---IRIWGLKD 520 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~---i~iw~~~~ 520 (540)
....++|+|.++++++.||.+++|++ ++... .+.+.|.+++|+ ++. ++++++.+.+ |.+|+..+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence 11125899999999999999999999 66554 345778999999 775 7888887754 77777764
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.5e-21 Score=187.38 Aligned_cols=288 Identities=10% Similarity=0.115 Sum_probs=196.0
Q ss_pred CCCCCCccccCCCcCcCCCCcceEEecccCcCcEEEEEEecCCCeEEEEeCC-CcEEEEEeecC-CceEEEEEecCCCCC
Q 009188 201 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSND-RSAIIWEVDLN-GGVTLKHKLSGHQKP 278 (540)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~d-g~i~iwd~~~~-~~~~~~~~~~~h~~~ 278 (540)
..++.+.+|+..... ....+.. ..|...+.+++|+|+|++|++++.+ +.|.+|+++.. +.......+..+. .
T Consensus 12 ~~~~~v~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 12 PESQQIHVWNLNHEG----ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp GGGTEEEEEEECTTS----CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred CCCCeEEEEEECCCC----cEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 445667777542110 1122233 3477889999999999999998886 99999999732 2334444555444 7
Q ss_pred eEEEEECcCCCeEEEeeC-CCcEEEEECC---CCeEEEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEEecCC-ceE
Q 009188 279 VSCVSWSSDDQQLLTCGV-EEAVRRWDVS---SGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMWELGG-KEL 352 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~ 352 (540)
+..++|+|+++++++++. ++.|.+||+. +++....+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ +..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 889999999998877765 7889999994 33444554433 4688899999999888887 889999999976 544
Q ss_pred E-----EeeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCC--ce---EEEee---c----CCceeEEEEcCCCCE
Q 009188 353 E-----CWKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREA--KV---ERYIE---E----DQTITSFSLSRDNKF 414 (540)
Q Consensus 353 ~-----~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~--~~---~~~~~---~----~~~i~~~~~s~~~~~ 414 (540)
. .........+..++|+|+++++++++ .++.+.+|+... .. ..... . ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 3 22223334788999999999776665 789999999854 22 11111 1 234668999999998
Q ss_pred EEEEe-cCCeEEEEEecC--C-ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee-CCCcEEEEE--CCCCce--eEeec
Q 009188 415 LLVNL-LNQEIHLWNIEG--E-VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS-EDSQVYIWH--RASCDL--IGALP 485 (540)
Q Consensus 415 l~~~~-~dg~i~i~d~~~--~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s-~dg~i~iwd--~~~~~~--~~~~~ 485 (540)
++++. .++.|.+||+.. . ...+..+..+.. .. .+.++++++++++++ .++.|.+|+ ..+++. +..+.
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~---~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PR---GFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CC---CEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cc---eEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 87555 689999999983 2 234444443333 22 233488999888777 689999995 445543 34444
Q ss_pred CCCCCeEEEEeCCCC
Q 009188 486 GHSGAVNCVSWNPAN 500 (540)
Q Consensus 486 ~h~~~v~~l~~~~~~ 500 (540)
. .....+++|.|+.
T Consensus 321 ~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 321 V-GQGPMWVVVNAHE 334 (343)
T ss_dssp C-SSSCCEEEEEEEC
T ss_pred c-CCCCeeEEEEccc
Confidence 3 2445667776644
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=8.3e-22 Score=189.81 Aligned_cols=273 Identities=10% Similarity=0.059 Sum_probs=188.6
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC-CCeEEEEECcCCCeEE-EeeCCCcEEEEECCCCeEEEE
Q 009188 236 FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ-KPVSCVSWSSDDQQLL-TCGVEEAVRRWDVSSGNCLHV 313 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~ 313 (540)
.+++++++.++++++.++.|.+||..++ +....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 4567888999999999999999998765 4444444332 2578899999998665 445688999999999998877
Q ss_pred eecCC------CcEEEEEEecCCCEEEEEeCC------------CcEEEEecCCceEE---EeeccccceEEEEEEccCC
Q 009188 314 YEKAG------LGLVSCGWHPDRKWIFSGAND------------KSICMWELGGKELE---CWKGQRTLKISDLEVTSDG 372 (540)
Q Consensus 314 ~~~~~------~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~ 372 (540)
+.... ..+.+++|+|+|+++++++.+ +.|.+||+.++... ..... ...+.+++|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg 159 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDG 159 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTS
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCC
Confidence 76432 236789999999999998865 89999999763321 11222 2257889999999
Q ss_pred CEEEEEecCCeEEEEECCCceE-EEeecCC-------------------------ceeEEEEcCCCCE-----------E
Q 009188 373 KQIITMCKESALLLLDREAKVE-RYIEEDQ-------------------------TITSFSLSRDNKF-----------L 415 (540)
Q Consensus 373 ~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~-------------------------~i~~~~~s~~~~~-----------l 415 (540)
+ +++++ +.|.+||..+... ....... ....+++++++.. +
T Consensus 160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 9 55543 3499999987652 2222111 3344666654421 1
Q ss_pred EEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEE
Q 009188 416 LVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCV 494 (540)
Q Consensus 416 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 494 (540)
.....++.+.+|++. .+... .....++| ++++++++ ++.|++||+.+++.+..+.. ...+.++
T Consensus 237 ~~~~~~~~~~~~~~~----------~~~~~---~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~ 300 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFA----------DLTEL---YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCV 300 (349)
T ss_dssp EEETTTCCEEEEEEE----------ECSSC---EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEE
T ss_pred EEeccCCcEEecccc----------cCCCc---ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccce
Confidence 122233444444432 12222 22233378 99999888 88999999999998887763 3457899
Q ss_pred EeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCc
Q 009188 495 SWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNG 532 (540)
Q Consensus 495 ~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~ 532 (540)
+|+|++. .|++++.++.|++||+.+++.......+.+
T Consensus 301 ~~s~dg~-~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 337 (349)
T 1jmx_B 301 AFDKKGD-KLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 337 (349)
T ss_dssp EECSSSS-CEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EECCCCC-EEEEecCCCeEEEEeccccceeeeeecCCC
Confidence 9999986 566678889999999999988776554443
No 148
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=7.4e-22 Score=193.26 Aligned_cols=295 Identities=10% Similarity=0.019 Sum_probs=203.5
Q ss_pred CcceEEecccCcCcEEE-----EEEecCCCeEEEEeC-CCc--EEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeE
Q 009188 220 PSRTLQILQGHTDEVWF-----LQFSHNGKYLASSSN-DRS--AIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL 291 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~-----~~~sp~g~~l~tg~~-dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 291 (540)
....+..+..|...... .+|||||++|++++. +|. |.+||+..+ .......++...+..+.|+|||+.|
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~spdg~~l 95 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VATQLTEGRGDNTFGGFLSPDDDAL 95 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEEECCCSSCBCSSSCEECTTSSEE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceEEeeeCCCCCccceEEcCCCCEE
Confidence 35567778888877776 899999999999887 675 666666543 3444445565556577899999999
Q ss_pred EEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEE--EecCCCEEEEEe----------------------CCCcEEEEec
Q 009188 292 LTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCG--WHPDRKWIFSGA----------------------NDKSICMWEL 347 (540)
Q Consensus 292 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~----------------------~dg~i~iwd~ 347 (540)
+.++.++.|++||+.+++....+..+...+.... +++++..++... .++.|.+||+
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 175 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL 175 (388)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred EEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence 9999999999999999988777766665554444 488998887432 3467999999
Q ss_pred CCceEEEeeccccceEEEEEEcc-CCCEEEEEecC------CeEEEEECCCce-EEEeecC--CceeEEEEcCCCCEEEE
Q 009188 348 GGKELECWKGQRTLKISDLEVTS-DGKQIITMCKE------SALLLLDREAKV-ERYIEED--QTITSFSLSRDNKFLLV 417 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d------~~i~~~d~~~~~-~~~~~~~--~~i~~~~~s~~~~~l~~ 417 (540)
.+++....... ...+..+.|+| ||+.++....+ ..|.++|..+.. .....+. ..+...+|+|+|+.|+.
T Consensus 176 ~~g~~~~l~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 176 KTGESTVILQE-NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVY 254 (388)
T ss_dssp TTCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred CCCceEEeecC-CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEE
Confidence 88776655543 34688999999 99999877753 378888887765 3333333 25778899999997765
Q ss_pred Eec-CC----eEEEEEecCCce-eeeEeeCCcCCeeEEEeeeccCCCcEEEEe---------eCCCcEEEEECCCCceeE
Q 009188 418 NLL-NQ----EIHLWNIEGEVK-LVAKYKGHKRSRFVIRSCFGGLEQAFIASG---------SEDSQVYIWHRASCDLIG 482 (540)
Q Consensus 418 ~~~-dg----~i~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~---------s~dg~i~iwd~~~~~~~~ 482 (540)
.+. ++ .|++||+.++.. .+..+.++...........++|+|+.|+.. ..+..|++||+.+++. .
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~ 333 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-H 333 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-E
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-E
Confidence 443 22 399999987632 222333210000000001247888877754 4566899999988765 4
Q ss_pred eecCCCC-----------CeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 483 ALPGHSG-----------AVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 483 ~~~~h~~-----------~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.+..|.. .+.+++|+|+|..+++++..+|...+|.+.
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 334 RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 4554555 578899999997555566668887777654
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=9e-21 Score=182.87 Aligned_cols=247 Identities=12% Similarity=0.117 Sum_probs=188.8
Q ss_pred CCeEEEEECcCCCeEEEeeC-------CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEE-eCCCcEEEEecC
Q 009188 277 KPVSCVSWSSDDQQLLTCGV-------EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSG-ANDKSICMWELG 348 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 348 (540)
..+..++|+|+++++++++. ++.|.+||..+++.+..+... ..+..++|+|++++++++ ..++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45788999999998888874 568999999999988888654 347789999999966555 557899999998
Q ss_pred CceEEEeecccc---------ceEEEEEEccCCCEEEEEe--cCCeEEEEECCCce-EEEee-cCCceeEEEEcCCCCEE
Q 009188 349 GKELECWKGQRT---------LKISDLEVTSDGKQIITMC--KESALLLLDREAKV-ERYIE-EDQTITSFSLSRDNKFL 415 (540)
Q Consensus 349 ~~~~~~~~~~~~---------~~v~~i~~~~~~~~l~~~~--~d~~i~~~d~~~~~-~~~~~-~~~~i~~~~~s~~~~~l 415 (540)
+++.......+. ..+.+++++|+++.+++++ .++.|.+||..+.. ..... ....+.+++|+|+++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 776654433321 1378899999999888776 47889999998876 33333 45568899999999999
Q ss_pred EEEecCCeEEEEEecCCceeeeEeeCC-cCCeeEEEeeeccCCCcEEEEeeC-CCcEEEEECCCCceeEeecCCCCCeEE
Q 009188 416 LVNLLNQEIHLWNIEGEVKLVAKYKGH-KRSRFVIRSCFGGLEQAFIASGSE-DSQVYIWHRASCDLIGALPGHSGAVNC 493 (540)
Q Consensus 416 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~ 493 (540)
++++.++.|.+||..+. .....+... .........+.++|+++++++++. ++.|++||..+++.+..+..+. ...
T Consensus 200 ~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~ 276 (353)
T 3vgz_A 200 YTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLA 276 (353)
T ss_dssp EEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCC
T ss_pred EEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cce
Confidence 99999999999999887 555555431 111112223334888887766655 5899999999999988877543 257
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc
Q 009188 494 VSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 494 l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
++|+|++..++++...++.|.+||..+++.....
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 9999999756666668999999999998876653
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=6.3e-21 Score=182.29 Aligned_cols=235 Identities=6% Similarity=-0.019 Sum_probs=173.6
Q ss_pred EECcCCCe-EEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC-CCcEEEEecCCceE-EEeeccc
Q 009188 283 SWSSDDQQ-LLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DKSICMWELGGKEL-ECWKGQR 359 (540)
Q Consensus 283 ~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~~~ 359 (540)
.|.+++.. +++++.++.|.+||+.+++....+..+...+ .++|+|+++++++++. ++.|.+||+.++.. ......+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45555544 6777789999999999999988887766677 9999999997776665 88999999987765 4444444
Q ss_pred cceEEEEEEccCCCEEEEEecCC---eEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEe-cCCe-EEEEEecCCc
Q 009188 360 TLKISDLEVTSDGKQIITMCKES---ALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNL-LNQE-IHLWNIEGEV 433 (540)
Q Consensus 360 ~~~v~~i~~~~~~~~l~~~~~d~---~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~-i~i~d~~~~~ 433 (540)
..+..+++|+|+|++++++..++ .|.+||..+.. .........+.+++|+|+|+++++++ .++. |.+|++....
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 43444499999999999555553 89999998866 44455566779999999998666654 4578 9999997543
Q ss_pred eee----eEeeCCcCCeeEEEeeeccCCCcEEE-EeeCCCcEEEEECCCCce---eEeecCCCCCeEEEEeCCCCCCEEE
Q 009188 434 KLV----AKYKGHKRSRFVIRSCFGGLEQAFIA-SGSEDSQVYIWHRASCDL---IGALPGHSGAVNCVSWNPANPHMLA 505 (540)
Q Consensus 434 ~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~ 505 (540)
... ..+. .... ...+.++|+|++++ ++..++.|++||+.+++. +..+.. ...+..++|+|++..+++
T Consensus 163 ~~~~~~~~~~~-~~~~---~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 163 VLFDTGQEFIS-GGTR---PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp CEEEEEEEEEC-SSSS---EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEE
T ss_pred cEeecCCcccc-CCCC---ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEE
Confidence 321 1121 1122 23334489998654 455689999999999998 777774 467789999999974556
Q ss_pred EEeCCCcEEEecCCCCCc
Q 009188 506 SASDDRTIRIWGLKDLNV 523 (540)
Q Consensus 506 s~~~Dg~i~iw~~~~~~~ 523 (540)
+...++.|.+||+.++++
T Consensus 238 ~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECSSEEEEEEEETTTTEE
T ss_pred EEcCCCEEEEEECCCCce
Confidence 666788999999999877
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=6.4e-21 Score=188.42 Aligned_cols=201 Identities=12% Similarity=0.099 Sum_probs=155.6
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCc--------eEEE----EEecCCCCCeEEEEECcCCCeEE----Ee
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG--------VTLK----HKLSGHQKPVSCVSWSSDDQQLL----TC 294 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~--------~~~~----~~~~~h~~~v~~l~~s~~~~~l~----s~ 294 (540)
...++.+++++++.++++|+.|+ +++|+...... .... .....+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44688999999999999999988 89987542100 0000 01124567899999999999999 78
Q ss_pred eCCCcEEEEECCCC--------e---EEEEeecCCCcEEEEEEecC-CCEEEEEeCCCcEEEEecCCceEEEeeccccce
Q 009188 295 GVEEAVRRWDVSSG--------N---CLHVYEKAGLGLVSCGWHPD-RKWIFSGANDKSICMWELGGKELECWKGQRTLK 362 (540)
Q Consensus 295 ~~dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (540)
+.|+.|++||+.++ + ....+.+|...|.+++|+|+ +.+|++++.||+|++||++++........+...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 89999999998764 2 24556678899999999997 789999999999999999887655444556678
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEECCCceE-EEeec-------CCceeEEEEcCCCCEEEEEe-cCC------eEEEE
Q 009188 363 ISDLEVTSDGKQIITMCKESALLLLDREAKVE-RYIEE-------DQTITSFSLSRDNKFLLVNL-LNQ------EIHLW 427 (540)
Q Consensus 363 v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~-------~~~i~~~~~s~~~~~l~~~~-~dg------~i~i~ 427 (540)
+.+++|+|+|++|++|+.||.|++||.+.... ....+ ...+.+++|++++.++++.+ .+| .+++|
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 99999999999999999999999999984332 22222 23789999999888776543 332 38999
Q ss_pred EecCC
Q 009188 428 NIEGE 432 (540)
Q Consensus 428 d~~~~ 432 (540)
+++..
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 99754
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=7.6e-20 Score=177.08 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=188.0
Q ss_pred CCeEEEEe----CCCcEEEEEeecC-CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC----CcEEEEECCC--CeE-
Q 009188 243 GKYLASSS----NDRSAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE----EAVRRWDVSS--GNC- 310 (540)
Q Consensus 243 g~~l~tg~----~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~--~~~- 310 (540)
..+++.|+ .++.|.+|+++.. +........ +...+..++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 34555653 4578999998754 233333333 67778889999999999999876 7899998865 543
Q ss_pred -EEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEEecCC-ceEEEe------e-------ccccceEEEEEEccCCCE
Q 009188 311 -LHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMWELGG-KELECW------K-------GQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 311 -~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~------~-------~~~~~~v~~i~~~~~~~~ 374 (540)
+.....+......+++ +++++++++ .++.|.+|++.. +.+... . ......+.+++|+|+|++
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3334445556777777 788777776 578999999964 222111 0 011234688999999997
Q ss_pred EEEEe-cCCeEEEEECCCce---------------EEEeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCc-eee
Q 009188 375 IITMC-KESALLLLDREAKV---------------ERYIEEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEV-KLV 436 (540)
Q Consensus 375 l~~~~-~d~~i~~~d~~~~~---------------~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~-~~~ 436 (540)
+++++ .++.+.+|++.... .........+..++|+|+|+++++++ .++.|.+|++.++. ...
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 76665 57899999876422 12233456678999999999888777 58999999998552 122
Q ss_pred eEeeCCcCCeeEEEeeeccCCCcEEEEeeCC--CcEEEEECC--CCc--eeEeecCCCCCeEEEEeCCCCCCEEEEEe-C
Q 009188 437 AKYKGHKRSRFVIRSCFGGLEQAFIASGSED--SQVYIWHRA--SCD--LIGALPGHSGAVNCVSWNPANPHMLASAS-D 509 (540)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~ 509 (540)
..+............+.++|+|++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|++. +|++++ .
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~-~l~~~~~~ 326 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGK-YLLVACRD 326 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSC-EEEEEETT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCC-EEEEEECC
Confidence 2332222111112334459999998776654 899999985 455 4445554 56788999999997 555555 7
Q ss_pred CCcEEEe--cCCCCCcccc
Q 009188 510 DRTIRIW--GLKDLNVKRK 526 (540)
Q Consensus 510 Dg~i~iw--~~~~~~~~~~ 526 (540)
++.|.+| |..++++...
T Consensus 327 ~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 327 TNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp TTEEEEEEECTTTCCEEEC
T ss_pred CCCEEEEEEECCCCcEeec
Confidence 8999995 5567776543
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=5.8e-21 Score=179.02 Aligned_cols=227 Identities=14% Similarity=0.154 Sum_probs=174.2
Q ss_pred EeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEEEeeccc-cceEEEEEEcc
Q 009188 293 TCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELECWKGQR-TLKISDLEVTS 370 (540)
Q Consensus 293 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~i~~~~ 370 (540)
.++.++.|++||+.+++... +..|...+.+++|+|++++|++++ ++.|.+||+.+ +........+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 34678999999999988764 446788999999999999999887 78999999988 7666655444 35788999999
Q ss_pred CCCEEEEEec----CCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEE-EEecCCeEEEEEecCCceeeeEeeCCcCC
Q 009188 371 DGKQIITMCK----ESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLL-VNLLNQEIHLWNIEGEVKLVAKYKGHKRS 445 (540)
Q Consensus 371 ~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 445 (540)
+++.+++++. ...|..++..+...........+..++|+|++++++ ++..++.+.+|++.........+..+...
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 174 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGR 174 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCc
Confidence 9999999983 345666666666555555555689999999999887 67789999999975433344455555544
Q ss_pred eeEEEeeeccCCCcEEEEee-CCCcEEEEECC-CCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCC-----------Cc
Q 009188 446 RFVIRSCFGGLEQAFIASGS-EDSQVYIWHRA-SCDLIGALPGHSGAVNCVSWNPANPHMLASASDD-----------RT 512 (540)
Q Consensus 446 ~~~i~~~~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-----------g~ 512 (540)
. ....++|++++++.++ .++.+.+|++. .+..+..+..|...+..++|+|++. .|++++.+ +.
T Consensus 175 ~---~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 175 N---DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD-KVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp E---EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS-EEEEEEEETTCCSCCSSEEEE
T ss_pred c---ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC-EEEEEEcCCCCCcccccCceE
Confidence 3 3344489999887666 58999999986 5666778888888999999999996 67666655 56
Q ss_pred EEEecCCCCCccc
Q 009188 513 IRIWGLKDLNVKR 525 (540)
Q Consensus 513 i~iw~~~~~~~~~ 525 (540)
|++||+.+++...
T Consensus 251 l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 251 VQLMDMDGGNVET 263 (297)
T ss_dssp EEEEETTSCSCEE
T ss_pred EEEEecCCCCcee
Confidence 9999999887643
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=2.6e-19 Score=173.27 Aligned_cols=262 Identities=13% Similarity=0.150 Sum_probs=182.7
Q ss_pred CcCcEEEEEEecCCCeEEEEeCC----CcEEEEEeecC-CceEEEEEecCCCCCeEEEEECcCCCeEEEee-CCCcEEEE
Q 009188 230 HTDEVWFLQFSHNGKYLASSSND----RSAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VEEAVRRW 303 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iw 303 (540)
|...+..++|+|+|++|++++.+ +.|.+|+++.. +..........+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 77788899999999999999876 79999999865 444555555556667888888 788777776 57899999
Q ss_pred ECCCCeEEEE----e--ec--------CCCcEEEEEEecCCCEEEEEe-CCCcEEEEecCCce-------E------EEe
Q 009188 304 DVSSGNCLHV----Y--EK--------AGLGLVSCGWHPDRKWIFSGA-NDKSICMWELGGKE-------L------ECW 355 (540)
Q Consensus 304 d~~~~~~~~~----~--~~--------~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-------~------~~~ 355 (540)
++.....+.. . .+ +...+.+++|+|+|+++++++ .++.|.+|++.... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 1 11 122357899999999776665 47899999986422 2 122
Q ss_pred eccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCceEEEe-------ecCCceeEEEEcCCCCEEEEEecC--CeEE
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREAKVERYI-------EEDQTITSFSLSRDNKFLLVNLLN--QEIH 425 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~d--g~i~ 425 (540)
.......+..++|+|+|+++++++ .++.|.+|+..+...... .+......++|+|+|++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 333345678999999999888777 689999999876542111 122346799999999998777665 8999
Q ss_pred EEEecC--C-ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEee-CCCcEEEE--ECCCCceeEeec-CCCCCeEEEEeC
Q 009188 426 LWNIEG--E-VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGS-EDSQVYIW--HRASCDLIGALP-GHSGAVNCVSWN 497 (540)
Q Consensus 426 i~d~~~--~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s-~dg~i~iw--d~~~~~~~~~~~-~h~~~v~~l~~~ 497 (540)
+|++.. + ...+..+.. ..... .+.++|+|++|++++ .++.|.+| |..+++...... .+...+.|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~---~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPR---NFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCC---EEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCc---eEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 2 123333433 22222 233489999888887 67899996 555777654432 245678888885
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.3e-20 Score=180.32 Aligned_cols=270 Identities=9% Similarity=0.064 Sum_probs=192.6
Q ss_pred cccCCCCCCccccCCCcCcCCCCcceEEecc-cCcC-cEEEEEEecCCCeEE-EEeCCCcEEEEEeecCCceEEEEEec-
Q 009188 198 FHNSSDRDMSLYTDHQCGRDQIPSRTLQILQ-GHTD-EVWFLQFSHNGKYLA-SSSNDRSAIIWEVDLNGGVTLKHKLS- 273 (540)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~-~V~~~~~sp~g~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~- 273 (540)
+..+.+..+.+|+... .+.+..+. ++.. .+.+++|+|+|++++ +++.++.|.+||+.++. ....+.
T Consensus 5 v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~~~~~~~ 74 (337)
T 1pby_B 5 LAPARPDKLVVIDTEK-------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE---TLGRIDL 74 (337)
T ss_dssp EEEETTTEEEEEETTT-------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC---EEEEEEC
T ss_pred EEcCCCCeEEEEECCC-------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC---eEeeEEc
Confidence 3444556667765432 34444444 2222 478999999998765 55567899999987653 233332
Q ss_pred CC----CCCeEEEEECcCCCeEEEee------------CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEe
Q 009188 274 GH----QKPVSCVSWSSDDQQLLTCG------------VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA 337 (540)
Q Consensus 274 ~h----~~~v~~l~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 337 (540)
++ ...+.+++|+|+|+++++++ .++.|.+||+.+++....+.. ...+.+++|+|++++++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence 22 22577899999999998886 579999999999988877765 4567889999999988888
Q ss_pred CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCC------------------------eEEEEECCCce
Q 009188 338 NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES------------------------ALLLLDREAKV 393 (540)
Q Consensus 338 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~------------------------~i~~~d~~~~~ 393 (540)
++.|.+||+.+++......... ....+.|+|++..++..+..+ .|.+||..+..
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred -CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 6889999998877654443322 011236788888765544332 46899998865
Q ss_pred EE---EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcE
Q 009188 394 ER---YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQV 470 (540)
Q Consensus 394 ~~---~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i 470 (540)
.. ...+...+.+++|+|++++++++ ++.|.+||+.+. +....+...... . .+.++++++++++++.++.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~~-~---~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLPHSY-Y---SVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECSSCC-C---EEEECTTSCEEEEESBSSEE
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecCCCce-e---eEEECCCCCEEEEEcCCCcE
Confidence 32 23445678899999999999988 799999999876 555555543322 2 22348899999999999999
Q ss_pred EEEECCCCceeEeecCCC
Q 009188 471 YIWHRASCDLIGALPGHS 488 (540)
Q Consensus 471 ~iwd~~~~~~~~~~~~h~ 488 (540)
++||+.+++.+..+..+.
T Consensus 304 ~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 304 AAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEETTTCCEEEEEECGG
T ss_pred EEEECcCCcEEEEEEcCC
Confidence 999999999988887553
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=2.6e-19 Score=172.29 Aligned_cols=249 Identities=13% Similarity=0.163 Sum_probs=173.6
Q ss_pred ccCcCcEEEEEEecCCCeEEEEeC---CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CCCcEEEE
Q 009188 228 QGHTDEVWFLQFSHNGKYLASSSN---DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VEEAVRRW 303 (540)
Q Consensus 228 ~~h~~~V~~~~~sp~g~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iw 303 (540)
..+...+..++|+|+|+ |++++. ++.|.+|++..+ .......+..+...+..++|+|+|++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 34567788899999999 555543 689999999643 3345555556778889999999999998888 67899999
Q ss_pred ECC-CCe--EEEEeecC---------CCcEEEEEEecCCCEEEEEeCCCcEEEEecC-CceEEEe---eccccceEEEEE
Q 009188 304 DVS-SGN--CLHVYEKA---------GLGLVSCGWHPDRKWIFSGANDKSICMWELG-GKELECW---KGQRTLKISDLE 367 (540)
Q Consensus 304 d~~-~~~--~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~---~~~~~~~v~~i~ 367 (540)
++. ++. .+..+... ...+.+++|+|+|+.+++...++.|.+|++. ++.+... .......+..++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 996 333 23333221 1248889999999966666668899999997 4443322 222333678899
Q ss_pred EccCCCEEEEE-ecCCeEEEEECCC--ceEE----EeecC------CceeEEEEcCCCCEEEE-EecCCeEEEEEecCC-
Q 009188 368 VTSDGKQIITM-CKESALLLLDREA--KVER----YIEED------QTITSFSLSRDNKFLLV-NLLNQEIHLWNIEGE- 432 (540)
Q Consensus 368 ~~~~~~~l~~~-~~d~~i~~~d~~~--~~~~----~~~~~------~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~- 432 (540)
|+|||++++++ ..++.+.+|+... .... ..... ..+..++|+|+|+++++ +..++.|.+|++...
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 99999976664 5688999999774 3311 11111 45888999999998755 455899999999732
Q ss_pred -ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-CcEEEE--ECCCCcee
Q 009188 433 -VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED-SQVYIW--HRASCDLI 481 (540)
Q Consensus 433 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-g~i~iw--d~~~~~~~ 481 (540)
...+..+..+......+ .++|+|++|++++.+ +.|.+| |..++++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~---~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDF---DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEEECSSSCCCEE---EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cEEEeEEEecCCCCcCeE---EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 13444454433332232 338999988887764 899999 55667654
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=7.8e-21 Score=201.59 Aligned_cols=276 Identities=12% Similarity=0.061 Sum_probs=190.1
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC---CeEEEEECcCCCeEEEeeC---------CCcEEEE
Q 009188 236 FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK---PVSCVSWSSDDQQLLTCGV---------EEAVRRW 303 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~---------dg~i~iw 303 (540)
+++|+|+|+++++ +.|++|++||+..+. ....+..|.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQ---SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCC---EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCc---EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 6799999965555 469999999998663 3333444433 4889999999999999876 6899999
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec-cccceE-----------------EE
Q 009188 304 DVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG-QRTLKI-----------------SD 365 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v-----------------~~ 365 (540)
|+.+++.+... .....+..++|+|||+.|+.+. ++.|++||+.++....... .+...+ .+
T Consensus 96 d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 96 DLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp ETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred ECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 99998862111 1124688899999999999886 7899999998766554432 221112 48
Q ss_pred EEEccCCCEEEEEecCC----------------------------------eEEEEECCCceE----EE------eecCC
Q 009188 366 LEVTSDGKQIITMCKES----------------------------------ALLLLDREAKVE----RY------IEEDQ 401 (540)
Q Consensus 366 i~~~~~~~~l~~~~~d~----------------------------------~i~~~d~~~~~~----~~------~~~~~ 401 (540)
++|+|||+.|++++.+. .|++||..++.. .. ..+..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999887552 788999987652 11 13566
Q ss_pred ceeEEEEcCCCCEEEEEecCC----eEEEEE----ecCCceeeeEe----eCCcCCeeE--EEeeeccCCCcEEEE--ee
Q 009188 402 TITSFSLSRDNKFLLVNLLNQ----EIHLWN----IEGEVKLVAKY----KGHKRSRFV--IRSCFGGLEQAFIAS--GS 465 (540)
Q Consensus 402 ~i~~~~~s~~~~~l~~~~~dg----~i~i~d----~~~~~~~~~~~----~~~~~~~~~--i~~~~~~~~~~~l~s--~s 465 (540)
.+.+++|+||++++++....+ .|.+|| ..++ .....+ .++...... .....++|+|+.++. +.
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 789999999988777654332 488888 6554 333333 234332220 002234889985543 44
Q ss_pred CCC--cEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC----CCcEEEecCCC
Q 009188 466 EDS--QVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD----DRTIRIWGLKD 520 (540)
Q Consensus 466 ~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----Dg~i~iw~~~~ 520 (540)
.+| .|++||+.+++ ...+..+...+..+.++ ++..+++++.. ++.+++|.+..
T Consensus 333 ~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 333 KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 555 57788887776 45666666678887777 77645555554 58899998764
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=1.4e-19 Score=178.85 Aligned_cols=202 Identities=13% Similarity=0.144 Sum_probs=150.1
Q ss_pred cCcCcEEEEEEecCCCeEE----EEeCCCcEEEEEeecC--------CceEEEEEecCCCCCeEEEEECcC-CCeEEEee
Q 009188 229 GHTDEVWFLQFSHNGKYLA----SSSNDRSAIIWEVDLN--------GGVTLKHKLSGHQKPVSCVSWSSD-DQQLLTCG 295 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~----tg~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~ 295 (540)
.|.+.|++++|+|+|++|+ +|+.|+.|+|||+... ........+.+|...|.+++|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3678899999999999999 7889999999998753 222335667789999999999998 78999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc------ccceEEEEEEc
Q 009188 296 VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ------RTLKISDLEVT 369 (540)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~i~~~ 369 (540)
.||+|++||++++........|...|.+++|+|+|++|++|+.||.|++||++.........+ +...+.+++|+
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEe
Confidence 999999999999987777777888999999999999999999999999999984333322221 22389999999
Q ss_pred cCCCEEEEEe-cCC------eEEEEECCCce----EEEee----------cCCceeEEEEcCCCCEEEEEec-CCeEEEE
Q 009188 370 SDGKQIITMC-KES------ALLLLDREAKV----ERYIE----------EDQTITSFSLSRDNKFLLVNLL-NQEIHLW 427 (540)
Q Consensus 370 ~~~~~l~~~~-~d~------~i~~~d~~~~~----~~~~~----------~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~ 427 (540)
+++.++++.+ .+| .+++|++.... ..+.. ...+...+...++.+++++++. .+.|.++
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl 329 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSIL 329 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEE
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEE
Confidence 9888776543 333 38899987642 11111 1112223333466677666554 4456666
Q ss_pred Eec
Q 009188 428 NIE 430 (540)
Q Consensus 428 d~~ 430 (540)
...
T Consensus 330 ~~~ 332 (434)
T 2oit_A 330 ARQ 332 (434)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=4.5e-20 Score=195.74 Aligned_cols=293 Identities=11% Similarity=0.030 Sum_probs=195.7
Q ss_pred cceEEecccCcC---cEEEEEEecCCCeEEEEeC---------CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCC
Q 009188 221 SRTLQILQGHTD---EVWFLQFSHNGKYLASSSN---------DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDD 288 (540)
Q Consensus 221 ~~~~~~l~~h~~---~V~~~~~sp~g~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 288 (540)
.+....+.+|.. .|.+++|||||++|++++. ++.|++||+..+ +... .......+.+++|||||
T Consensus 46 g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g---~~~~-~~~l~~~~~~~~~SPDG 121 (719)
T 1z68_A 46 GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG---EFVR-GNELPRPIQYLCWSPVG 121 (719)
T ss_dssp CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---EECC-SSCCCSSBCCEEECSST
T ss_pred CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC---cccc-ceecCcccccceECCCC
Confidence 344555555544 4999999999999999876 789999998755 2200 01123568899999999
Q ss_pred CeEEEeeCCCcEEEEECCCCeEEEEe-ecCCCcE-----------------EEEEEecCCCEEEEEeCCC----------
Q 009188 289 QQLLTCGVEEAVRRWDVSSGNCLHVY-EKAGLGL-----------------VSCGWHPDRKWIFSGANDK---------- 340 (540)
Q Consensus 289 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~dg---------- 340 (540)
+.|+++. ++.|++|++.+++..... .++...+ .+++|+|||++|++++.|.
T Consensus 122 ~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 122 SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence 9999986 789999999988765433 2222222 4899999999999987652
Q ss_pred ------------------------cEEEEecCCceEE---Eee-----ccccceEEEEEEccCCCEEEEEecC----CeE
Q 009188 341 ------------------------SICMWELGGKELE---CWK-----GQRTLKISDLEVTSDGKQIITMCKE----SAL 384 (540)
Q Consensus 341 ------------------------~i~iwd~~~~~~~---~~~-----~~~~~~v~~i~~~~~~~~l~~~~~d----~~i 384 (540)
.|++||+.++... ... ..+...+..++|+||++.+++.... ..|
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL 280 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence 7889999876542 221 2355678999999998776664432 248
Q ss_pred EEEE----CCCceEE-E-----eecCCcee-----EEEEcCCCCEEEE--EecCC--eEEEEEecCCceeeeEeeCCcCC
Q 009188 385 LLLD----REAKVER-Y-----IEEDQTIT-----SFSLSRDNKFLLV--NLLNQ--EIHLWNIEGEVKLVAKYKGHKRS 445 (540)
Q Consensus 385 ~~~d----~~~~~~~-~-----~~~~~~i~-----~~~~s~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~ 445 (540)
.+|| ..++... . ..+...+. .+.|+|+|+.++. +..+| .|.+||+.+.. ...+..+...
T Consensus 281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~ 358 (719)
T 1z68_A 281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWE 358 (719)
T ss_dssp EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSC
T ss_pred EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceE
Confidence 8899 7665521 1 23455565 7899999986654 44455 46666766542 3344443333
Q ss_pred eeEEEeeeccCCCcEEEEeeC-----CCcEEEEECCC--Cc-eeEeec----CCCCCeEEEEeCCCCCCEEEEEeCC--C
Q 009188 446 RFVIRSCFGGLEQAFIASGSE-----DSQVYIWHRAS--CD-LIGALP----GHSGAVNCVSWNPANPHMLASASDD--R 511 (540)
Q Consensus 446 ~~~i~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~--~~-~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~~D--g 511 (540)
.. ...++ +++.++..+. ++.+.+|.+.. +. ....+. +|...+..+.|+|++..++++++.+ .
T Consensus 359 v~--~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p 434 (719)
T 1z68_A 359 AI--NIFRV--TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP 434 (719)
T ss_dssp EE--EEEEE--CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC
T ss_pred EE--EEEEE--eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC
Confidence 22 23333 5555555554 47888887653 42 123333 3667788999999997666666554 4
Q ss_pred cEEEecCCCCCcc
Q 009188 512 TIRIWGLKDLNVK 524 (540)
Q Consensus 512 ~i~iw~~~~~~~~ 524 (540)
.+.+||+.+++..
T Consensus 435 ~~~l~d~~~g~~~ 447 (719)
T 1z68_A 435 ISTLHDGRTDQEI 447 (719)
T ss_dssp EEEEECSSSCCEE
T ss_pred eEEEEECCCCCEE
Confidence 6899999888743
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=5.8e-19 Score=170.99 Aligned_cols=276 Identities=9% Similarity=0.095 Sum_probs=184.0
Q ss_pred eEEEEeCC--CcEEEEEeecCC-ceEEEEEec-CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC-CCeEEEEeecC-C
Q 009188 245 YLASSSND--RSAIIWEVDLNG-GVTLKHKLS-GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS-SGNCLHVYEKA-G 318 (540)
Q Consensus 245 ~l~tg~~d--g~i~iwd~~~~~-~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~ 318 (540)
+++.|+.. +.|.+|+++... ......... .....+..++|+|+|++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556543 568888876432 233232221 344568889999999999998888 99999997 78765443311 1
Q ss_pred CcEEEEEEecCCCE--EEEEe-------------CCCcEEEEecC-CceEEEeec----cccceEEEEEEccCCCEEEEE
Q 009188 319 LGLVSCGWHPDRKW--IFSGA-------------NDKSICMWELG-GKELECWKG----QRTLKISDLEVTSDGKQIITM 378 (540)
Q Consensus 319 ~~v~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~ 378 (540)
..+.+++|+|+|++ +++++ .+|.+.+|++. .+.+..... .....+.+++|+|||++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556889999995 44543 68999999996 344332211 234578999999999988877
Q ss_pred ec-CCeEEEEECC-CceEE---Eee---cCCceeEEEEcCCCCEEEEEec-CCeEEEEEecCC-ceee---eEeeCCc--
Q 009188 379 CK-ESALLLLDRE-AKVER---YIE---EDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEGE-VKLV---AKYKGHK-- 443 (540)
Q Consensus 379 ~~-d~~i~~~d~~-~~~~~---~~~---~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~-~~~~---~~~~~~~-- 443 (540)
+. ++.|.+|+.. ++... ... +...+..++|+|+|+++++++. ++.|.+|++... .... ..+....
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6899999997 44321 121 2567899999999999888775 689999987631 1221 1222111
Q ss_pred --CCe-------eEEEeeeccCCCcEEEEeeCCC------cEEEEECC-CCceeE---eecCCCCCeEEEEeCC---CCC
Q 009188 444 --RSR-------FVIRSCFGGLEQAFIASGSEDS------QVYIWHRA-SCDLIG---ALPGHSGAVNCVSWNP---ANP 501 (540)
Q Consensus 444 --~~~-------~~i~~~~~~~~~~~l~s~s~dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~l~~~~---~~~ 501 (540)
... ......+++|+|++|++++.+. .|.+|++. +++... ....+...+..++|+| ++.
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 101 1223332599999888776432 89999986 666543 2334555677899999 786
Q ss_pred CEEEEEeC-CCcEEEecCCCCC
Q 009188 502 HMLASASD-DRTIRIWGLKDLN 522 (540)
Q Consensus 502 ~~l~s~~~-Dg~i~iw~~~~~~ 522 (540)
+|++++. ++.|.+|++....
T Consensus 323 -~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 323 -WMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp -EEEEECSSSCEEEEEEEETTE
T ss_pred -EEEEEEcCCCeEEEEEEchhh
Confidence 6777665 5899999987653
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=4.7e-20 Score=180.88 Aligned_cols=291 Identities=12% Similarity=0.060 Sum_probs=190.1
Q ss_pred cceEEecccCcCc-----EEEEEEecCCCeEEEEeCC-C--cEEEEEeecCCceEEEEEecCCCCC-eEEEEECcCCCeE
Q 009188 221 SRTLQILQGHTDE-----VWFLQFSHNGKYLASSSND-R--SAIIWEVDLNGGVTLKHKLSGHQKP-VSCVSWSSDDQQL 291 (540)
Q Consensus 221 ~~~~~~l~~h~~~-----V~~~~~sp~g~~l~tg~~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l 291 (540)
...+..+..+... +.+++|||||++|+.+... + .|.+||+..+ ... .+..+... ...+.|+|+|+.|
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---~~~-~l~~~~~~~~~~~~~spdg~~l 95 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---QAV-QLTEGKGDNTFGGFISTDERAF 95 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---EEE-ECCCSSCBCTTTCEECTTSSEE
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC---cEE-EeecCCCCccccceECCCCCEE
Confidence 3445555555443 7788999999998877543 3 5777776543 222 23333333 3347899999999
Q ss_pred EEeeCCCcEEEEECCCCeEEEEeecCCCcEEE-------------------EEEecCCCEEEEE-----eCCCcEEEEec
Q 009188 292 LTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVS-------------------CGWHPDRKWIFSG-----ANDKSICMWEL 347 (540)
Q Consensus 292 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~iwd~ 347 (540)
+.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|.+||+
T Consensus 96 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~ 175 (396)
T 3c5m_A 96 FYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175 (396)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred EEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence 99999999999999998876666544432222 3456777766544 35568999999
Q ss_pred CCceEEEeeccccceEEEEEEcc-CCCEEEEEecC------CeEEEEECCCce-EEEeec--CCceeEEEEcCCCCEEEE
Q 009188 348 GGKELECWKGQRTLKISDLEVTS-DGKQIITMCKE------SALLLLDREAKV-ERYIEE--DQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d------~~i~~~d~~~~~-~~~~~~--~~~i~~~~~s~~~~~l~~ 417 (540)
.+++...... ....+..+.|+| ++..++..+.+ ..|.+||..+.. .....+ ...+..++|+|+|++|+.
T Consensus 176 ~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (396)
T 3c5m_A 176 ETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAY 254 (396)
T ss_dssp TTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred CCCcEEeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEE
Confidence 8876655543 344788999999 78877776643 468899987665 333222 235788999999998877
Q ss_pred EecC-----CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccC-CCcEEEEee----------------CCCcEEEEEC
Q 009188 418 NLLN-----QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL-EQAFIASGS----------------EDSQVYIWHR 475 (540)
Q Consensus 418 ~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~s----------------~dg~i~iwd~ 475 (540)
.+.+ +.|++||+.++. ....... .. . . ..+++ +|+++++++ .++.|++||+
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~-~~~l~~~-~~-~-~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 255 VSYFKGQTDRVIYKANPETLE-NEEVMVM-PP-C-S---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEETTTCCEEEEEECTTTCC-EEEEEEC-CS-E-E---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EecCCCCccceEEEEECCCCC-eEEeeeC-CC-C-C---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 7554 449999997652 2222111 11 1 1 23367 999888754 3478999999
Q ss_pred CCCceeEeecCCCC-----------CeEEEEeCCCCCCEEEEEeCCCcEEEe--cCCCCCcc
Q 009188 476 ASCDLIGALPGHSG-----------AVNCVSWNPANPHMLASASDDRTIRIW--GLKDLNVK 524 (540)
Q Consensus 476 ~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~l~s~~~Dg~i~iw--~~~~~~~~ 524 (540)
.+++.. .+..+.. .+..++|+|++..+++++..++...+| ++.+++..
T Consensus 328 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 328 KAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp TTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred ccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 887753 3444444 256789999997444444456665555 44554443
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=7.9e-20 Score=188.83 Aligned_cols=233 Identities=11% Similarity=0.054 Sum_probs=173.7
Q ss_pred CCCeEEEEECcCCCeEEEeeC-CCcEEEEECCCCeEEEEeecCC-CcEEEEEEecCCCEEEEEeC---CCcEEEE--ec-
Q 009188 276 QKPVSCVSWSSDDQQLLTCGV-EEAVRRWDVSSGNCLHVYEKAG-LGLVSCGWHPDRKWIFSGAN---DKSICMW--EL- 347 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iw--d~- 347 (540)
..+|.+++|+|||+.|++++. ||+++||++.+++..+ +..+. ..+..++|+|| +.+++++. +....+| +.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 9999999997766554 44444 68999999999 77777765 4445555 44
Q ss_pred -CCceEEEeeccccceEEEEEEccCCCE-EEEEecCCeEEEEECCCceEEE-eecCCceeEEEEcCCCCEEEEEecC---
Q 009188 348 -GGKELECWKGQRTLKISDLEVTSDGKQ-IITMCKESALLLLDREAKVERY-IEEDQTITSFSLSRDNKFLLVNLLN--- 421 (540)
Q Consensus 348 -~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d--- 421 (540)
.+... ...... .....+|+|+|+. +++...++.+.+||+.++.... ..+.. .+++|+|||+++++++.+
T Consensus 99 ~~g~~~-~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp STTCCE-ECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT
T ss_pred CCCccc-cccCCC--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC
Confidence 33333 333332 2346688888864 3344455556699998876333 33333 899999999999988776
Q ss_pred -CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC--cEEEEECCCCceeEeecCCCCCeEEEE---
Q 009188 422 -QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS--QVYIWHRASCDLIGALPGHSGAVNCVS--- 495 (540)
Q Consensus 422 -g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~--- 495 (540)
+.|++||+.++ . ...+..+.... ....++|||++|+++..+| .|++||+.+++.. .+.+|...+..++
T Consensus 174 ~~~i~~~d~~~g-~-~~~l~~~~~~~---~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 174 RVSLFTSNLSSG-G-LRVFDSGEGSF---SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp EEEEEEEETTTC-C-CEEECCSSCEE---EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred CeEEEEEcCCCC-C-ceEeecCCCcc---ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 78999998876 2 23555555443 3344599999999888888 8999999999888 7788887777777
Q ss_pred -----eCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 496 -----WNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 496 -----~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
|+|+| .++++++.||.+++|++ ++..
T Consensus 248 ~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 248 ITWLGYLPDG-RLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp EEEEEECTTS-CEEEEEEETTEEEEEET--TEEE
T ss_pred ccceeEcCCC-cEEEEEEcCCcEEEEEE--CCee
Confidence 99999 69999999999999999 5544
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=4.7e-18 Score=164.60 Aligned_cols=244 Identities=9% Similarity=0.079 Sum_probs=166.6
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCe--EEEee------------
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQ--LLTCG------------ 295 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~--l~s~~------------ 295 (540)
+...+..++|+|+|++|++++.+ .|.+|++...+..........+ +.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 44578899999999999999887 9999999722222222222222 23566899999994 55553
Q ss_pred -CCCcEEEEECC-CCeEEEEee----cCCCcEEEEEEecCCCEEEEEeC-CCcEEEEecC-CceEEEe--ec--cccceE
Q 009188 296 -VEEAVRRWDVS-SGNCLHVYE----KAGLGLVSCGWHPDRKWIFSGAN-DKSICMWELG-GKELECW--KG--QRTLKI 363 (540)
Q Consensus 296 -~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~~~--~~--~~~~~v 363 (540)
.++.+.+|++. +++....+. .+...+.+++|+|||+++++++. ++.|.+|++. +++.... .. .+...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 466554443 24567899999999998887764 6799999997 5554322 11 124568
Q ss_pred EEEEEccCCCEEEEEec-CCeEEEEECC--CceEE-----Eeec-------CC------ceeEEE-EcCCCCEEEEEecC
Q 009188 364 SDLEVTSDGKQIITMCK-ESALLLLDRE--AKVER-----YIEE-------DQ------TITSFS-LSRDNKFLLVNLLN 421 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~~-d~~i~~~d~~--~~~~~-----~~~~-------~~------~i~~~~-~s~~~~~l~~~~~d 421 (540)
..++|+|+|+++++++. ++.+.+|+.. ++... .... .. .+..++ |+|+|++|+++..+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999988775 6899999765 33211 1111 11 478899 99999998877653
Q ss_pred C------eEEEEEecCCceeee---EeeCCcCCeeEEEeeeccC---CCcEEEEeeCC-CcEEEEECCCC
Q 009188 422 Q------EIHLWNIEGEVKLVA---KYKGHKRSRFVIRSCFGGL---EQAFIASGSED-SQVYIWHRASC 478 (540)
Q Consensus 422 g------~i~i~d~~~~~~~~~---~~~~~~~~~~~i~~~~~~~---~~~~l~s~s~d-g~i~iwd~~~~ 478 (540)
. .|.+|++........ ....+..... ...++| +|++|++++.+ +.|.+|++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~---~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH---SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT---CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc---cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 899999963223322 1222221111 122367 79999988764 89999998765
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=3.1e-18 Score=165.10 Aligned_cols=287 Identities=9% Similarity=0.049 Sum_probs=195.4
Q ss_pred CCCeEEEEe------CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC----------CCcEEEEEC
Q 009188 242 NGKYLASSS------NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV----------EEAVRRWDV 305 (540)
Q Consensus 242 ~g~~l~tg~------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~ 305 (540)
+++++++.. .|+.|.+||..++ +....+..+..+ .++|+|+++++++++. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNG---KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTC---CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCC---eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 445555443 3679999998655 344556655554 8999999999998863 567999999
Q ss_pred CCCeEEEEeecC------CCcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEe-eccccceEEEEEEccCC-CEE
Q 009188 306 SSGNCLHVYEKA------GLGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECW-KGQRTLKISDLEVTSDG-KQI 375 (540)
Q Consensus 306 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l 375 (540)
.+++.+..+... ......++++|||++|+++.. ++.|.+||+.+.+.... .... ....+.+.|++ ..+
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSF 166 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEE
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeE
Confidence 999988887643 234567899999999998874 57899999988776554 3322 22335566765 678
Q ss_pred EEEecCCeEEEEECCC-ceEE-E------eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc-eeeeEeeCCc---
Q 009188 376 ITMCKESALLLLDREA-KVER-Y------IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV-KLVAKYKGHK--- 443 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~-~~~~-~------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~--- 443 (540)
++.+.||.+.+++... .... . .........+.+++++..++..+.++.+.++|+.... .....+....
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 8888999999988754 2211 1 1111112233446777777777889999999986542 2222221110
Q ss_pred ---CCe-eEEEeeeccCCCcEEEEeeC-----------CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEe
Q 009188 444 ---RSR-FVIRSCFGGLEQAFIASGSE-----------DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS 508 (540)
Q Consensus 444 ---~~~-~~i~~~~~~~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 508 (540)
... .......++++++.++++.. .+.|.+||..+++.+.++..+. +.+++|+|++. +|++++
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~-~l~v~n 323 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN-LMLTLD 323 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT-EEEEEC
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC-EEEEeC
Confidence 000 00000123678777766543 3489999999999999998876 99999999997 777777
Q ss_pred CCCcEEEecCCCC--Cccccc----cCCCceEeccCC
Q 009188 509 DDRTIRIWGLKDL--NVKRKD----CHSNGVHYCNGG 539 (540)
Q Consensus 509 ~Dg~i~iw~~~~~--~~~~~~----~~~~~v~~c~~g 539 (540)
. +.|.+||..++ ++.... ..+.++.+..+|
T Consensus 324 ~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 324 G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 6 99999999999 766552 234556666554
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.4e-18 Score=184.28 Aligned_cols=268 Identities=9% Similarity=0.027 Sum_probs=183.0
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC-----eEEEEECcCCCeEEEeeCC---------C
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP-----VSCVSWSSDDQQLLTCGVE---------E 298 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-----v~~l~~s~~~~~l~s~~~d---------g 298 (540)
...+++|+|||++++++ ||+|++||+.++. ....+.+|... ...+.|||||++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGN---SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCC---EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCc---eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 45589999999998886 8999999998763 33446666532 2447899999999998876 5
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc-cceE--------------
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR-TLKI-------------- 363 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v-------------- 363 (540)
.+.+||+.+++.. .+..+...+...+|||||+.|+.+. ++.|++|++.++....+.... ...+
T Consensus 93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 6779999999865 3556677899999999999999884 689999999877665543321 1112
Q ss_pred ---EEEEEccCCCEEEEEecCC------------------------------------eEEEEECCC---c---e-EEEe
Q 009188 364 ---SDLEVTSDGKQIITMCKES------------------------------------ALLLLDREA---K---V-ERYI 397 (540)
Q Consensus 364 ---~~i~~~~~~~~l~~~~~d~------------------------------------~i~~~d~~~---~---~-~~~~ 397 (540)
..+.|+|||+.|+.++.|. .|++||+.+ + . ....
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 3489999999999875321 588899887 5 3 2332
Q ss_pred e------cCCceeEEEEcCCCCEEEEEecC----CeEEEEEecCCc----e-eeeEe--eCCcCCeeE--EEeeeccCCC
Q 009188 398 E------EDQTITSFSLSRDNKFLLVNLLN----QEIHLWNIEGEV----K-LVAKY--KGHKRSRFV--IRSCFGGLEQ 458 (540)
Q Consensus 398 ~------~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~----~-~~~~~--~~~~~~~~~--i~~~~~~~~~ 458 (540)
. +...+..++|+|||+.++..... ..|.+||+.++. . ....+ ..+...+.. .....++|+|
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 2 56678999999999977665443 369999998763 0 11111 233322110 1122348999
Q ss_pred cEEE-EeeC-CC--cEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 459 AFIA-SGSE-DS--QVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 459 ~~l~-s~s~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
+.++ ..+. +| .|++||..+++... +......|..+.+ +++..++++++.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEec
Confidence 9776 5553 33 68889988776554 4434555666542 345556666655
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=4.2e-18 Score=178.81 Aligned_cols=293 Identities=8% Similarity=0.048 Sum_probs=200.3
Q ss_pred EecccCcCcEEEEEEecCCCeEEEE--eCCCcEEEEEeecCCceEEEEEecCCCCCeE---------EEEEC--cCCCe-
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASS--SNDRSAIIWEVDLNGGVTLKHKLSGHQKPVS---------CVSWS--SDDQQ- 290 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~~~~~- 290 (540)
..+.+|...|..++|++++-+++++ +.++...||....++. ...+..|...+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---cceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 4577899999999999887667776 5578899999754432 345667766666 56665 99998
Q ss_pred EEEeeC-CCcEEEEECC--C-CeEEEEeec-----CCCcEEEEEEecCCCEEEEEeCC----------CcEEEEecCC--
Q 009188 291 LLTCGV-EEAVRRWDVS--S-GNCLHVYEK-----AGLGLVSCGWHPDRKWIFSGAND----------KSICMWELGG-- 349 (540)
Q Consensus 291 l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~-- 349 (540)
|+.++. +..|.+|++. . ++ ...+.. +...+.+++|+|||+.|++++.+ ..|++||+.+
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 776654 5567777765 2 44 444544 56678899999999999988876 5899999987
Q ss_pred ----ceEEEeeccccceEEEEEEccCCCEEEEEecC--------CeEEEEECC-Cc---e-EEEee-cCCceeEEEEcCC
Q 009188 350 ----KELECWKGQRTLKISDLEVTSDGKQIITMCKE--------SALLLLDRE-AK---V-ERYIE-EDQTITSFSLSRD 411 (540)
Q Consensus 350 ----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------~~i~~~d~~-~~---~-~~~~~-~~~~i~~~~~s~~ 411 (540)
+........+...+..++|+|||++|+.++.+ ..|++||+. ++ . ..... +...+..+.|+||
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 66655541233478889999999999988755 379999998 44 3 33333 3678999999999
Q ss_pred CCEEEEEecCC--eEEEEEecCCceeeeEeeCCcCCe---eE--EEeeeccCCCcEEEEeeCCCcEEEE--ECCCCceeE
Q 009188 412 NKFLLVNLLNQ--EIHLWNIEGEVKLVAKYKGHKRSR---FV--IRSCFGGLEQAFIASGSEDSQVYIW--HRASCDLIG 482 (540)
Q Consensus 412 ~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~---~~--i~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~ 482 (540)
|++++++..++ .|.+||+.++ ........+.... .. +....+++++.++++++. +.+++| |..+++ +.
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~ 329 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPATG-AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LV 329 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTTC-CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EE
T ss_pred CeEEEEECCCCCeEEEEEECCCC-ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EE
Confidence 99888887788 5556665443 3222222221110 00 112223678999999998 999999 555555 67
Q ss_pred eecCCCCCeEEE-EeCCCCCCEEEEEeCCC--cEEEecCCCCCccc
Q 009188 483 ALPGHSGAVNCV-SWNPANPHMLASASDDR--TIRIWGLKDLNVKR 525 (540)
Q Consensus 483 ~~~~h~~~v~~l-~~~~~~~~~l~s~~~Dg--~i~iw~~~~~~~~~ 525 (540)
.+..|.+.+..+ +++++. .++++++.+. .|.+||+.+++...
T Consensus 330 ~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 330 DAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp ECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEEEECCCCceEE
Confidence 788888888877 554432 2344445554 45666776776543
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=2.4e-17 Score=157.51 Aligned_cols=270 Identities=12% Similarity=0.112 Sum_probs=192.5
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
..|.+++|+|++..++..+.++.++.|. . .....+..+...+.+++|+++|++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---c---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 4567888999888887778888999992 2 344556677778899999999998888888999999999888876
Q ss_pred EEeecCCCcEEEEEEecCCCEEEEEeCC----CcEEEEecCCceEEEeec--cccceEEEEEEccCCCEEEEEec-----
Q 009188 312 HVYEKAGLGLVSCGWHPDRKWIFSGAND----KSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCK----- 380 (540)
Q Consensus 312 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~----- 380 (540)
.....+...+.+++++++++.++++..+ +.|.+||..++....... .....+.+++++|+|+.+++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 6554566789999999999877777666 689999998766553322 23347899999999987776653
Q ss_pred -CCeEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEE-ecCCeEEEEEecCCceeeeEe-----eCCcCCeeEEEee
Q 009188 381 -ESALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGEVKLVAKY-----KGHKRSRFVIRSC 452 (540)
Q Consensus 381 -d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~i~~~ 452 (540)
.+.|..+|..+.. .........+..++|+|+++.++++ +.++.|.+||+.........+ ...... .....+
T Consensus 160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i 238 (333)
T 2dg1_A 160 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC 238 (333)
T ss_dssp CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred CCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence 3667778776544 3333344567899999999866554 457899999996421211111 000110 122333
Q ss_pred eccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCC------CeEEEEeCCCCCCEEEEEeC
Q 009188 453 FGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSG------AVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 453 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~~~~~~~~l~s~~~ 509 (540)
..+++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|++..+++++..
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 44788998888878899999998 5676666654432 68999999987544445444
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=7.1e-17 Score=150.64 Aligned_cols=242 Identities=13% Similarity=0.187 Sum_probs=177.8
Q ss_pred CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeec------CCCcEEEEEEe-cCCCEEEEEeC-CCcEEEE
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEK------AGLGLVSCGWH-PDRKWIFSGAN-DKSICMW 345 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~~~~~-dg~i~iw 345 (540)
++-..+.+++++++++++++.+.++.|.+||.. ++.+..+.. +...+..++++ ++++.+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999976 666666642 23468899995 66665555533 7899999
Q ss_pred ecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee---cCCceeEEEEcCCCCEEEEEecCC
Q 009188 346 ELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE---EDQTITSFSLSRDNKFLLVNLLNQ 422 (540)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg 422 (540)
|..+.....+.......+..++++++|+.+++...++.|.+||.......... ....+..++++|+++++++...++
T Consensus 106 d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 185 (286)
T 1q7f_A 106 NQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 185 (286)
T ss_dssp CTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred CCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCC
Confidence 96655554444444457899999999998887778899999998766544442 335689999999999888878899
Q ss_pred eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC-cEEEEECCCCceeEeecCCCC--CeEEEEeCCC
Q 009188 423 EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS-QVYIWHRASCDLIGALPGHSG--AVNCVSWNPA 499 (540)
Q Consensus 423 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~ 499 (540)
.|++||... ..+..+.......... .+..+++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+
T Consensus 186 ~i~~~~~~g--~~~~~~~~~g~~~~p~-~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 186 CVKVFNYEG--QYLRQIGGEGITNYPI-GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp EEEEEETTC--CEEEEESCTTTSCSEE-EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEEEEcCCC--CEEEEEccCCccCCCc-EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 999999754 3444554332111122 223378899888888876 9999995 5677776665433 4789999999
Q ss_pred CCCEEEEEeCCCcEEEecCCCCC
Q 009188 500 NPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 500 ~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
+. ++++ +.|+.|++|++....
T Consensus 262 g~-l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 262 GS-VVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp TE-EEEE-ETTTEEEEEECSCCC
T ss_pred Cc-EEEE-CCCCeEEEEEccccc
Confidence 85 7777 679999999986643
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=3.4e-17 Score=156.01 Aligned_cols=241 Identities=13% Similarity=0.116 Sum_probs=181.4
Q ss_pred CCCeEEEEECcCCCeEEEeeCC------------------------CcEEEEECCCCeEEEEee-cCCCcEEEEEEecCC
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVE------------------------EAVRRWDVSSGNCLHVYE-KAGLGLVSCGWHPDR 330 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 330 (540)
-+.+.+++++|+|+++++.+.+ +.|.+||..+++....+. .+-.....++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888776 479999999999877664 233578899999999
Q ss_pred CEEEEEeCCCcEEEEecCCc--eEEEee--------ccccceEEEEEEcc-CCCEEEEEe-cCCeEEEEECCCceEEEee
Q 009188 331 KWIFSGANDKSICMWELGGK--ELECWK--------GQRTLKISDLEVTS-DGKQIITMC-KESALLLLDREAKVERYIE 398 (540)
Q Consensus 331 ~~l~~~~~dg~i~iwd~~~~--~~~~~~--------~~~~~~v~~i~~~~-~~~~l~~~~-~d~~i~~~d~~~~~~~~~~ 398 (540)
+.+++...++.|++||..+. .+..+. ..+...+..++++| ++..+++.+ .++.|++|+..........
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~ 182 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG 182 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence 98888888899999998765 333332 22334689999999 788888876 6999999997666544332
Q ss_pred c-----------CCceeEEEEcCC-CCEEEEEecCCeEEEEEecCCceeeeEeeC--CcCCeeEEEeeeccC------CC
Q 009188 399 E-----------DQTITSFSLSRD-NKFLLVNLLNQEIHLWNIEGEVKLVAKYKG--HKRSRFVIRSCFGGL------EQ 458 (540)
Q Consensus 399 ~-----------~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~------~~ 458 (540)
. -..+..++++|+ +.++++...++.|++||..++ ..+..+.. +......+ .+ +| ++
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~--~~-~pg~~~~~~g 258 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAI--SY-IPGFLFAVNG 258 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEE--EE-ETTEEEEEEC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCccee--ee-cCCEEEEeCC
Confidence 1 123789999998 777777778899999999855 55666543 22232322 22 45 33
Q ss_pred cEEEEeeCCCcEEEEECCCCceeEeec---CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 459 AFIASGSEDSQVYIWHRASCDLIGALP---GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
+..++...+..|++||..+++.+..+. ++...+.+++++|+| .++++...++.|++|++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 333334455689999999999998873 677789999999999 59999999999999998753
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=5.3e-17 Score=156.05 Aligned_cols=260 Identities=10% Similarity=0.124 Sum_probs=177.1
Q ss_pred CcEEEEEEecCCCeEEEEe---------CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---C-
Q 009188 232 DEVWFLQFSHNGKYLASSS---------NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE---E- 298 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~---------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g- 298 (540)
..+..+++ ||++++... .++.|.+|++..+.. . .+ ..+..++|+|||+.|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~---~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-R---FI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-E---EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-E---Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 35667777 888887642 256788888875432 1 22 458899999999999988754 2
Q ss_pred -cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC---------------------------CcEEEEecCCc
Q 009188 299 -AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND---------------------------KSICMWELGGK 350 (540)
Q Consensus 299 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~~~~ 350 (540)
.|.+|++.+++......... +..++|+|||+.|+.++.+ ..|.+||+.++
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred ceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 38888998888766554443 8999999999999887642 56999999887
Q ss_pred eE-EEeeccccceEEEEEEccCCCEEEEEecC---------CeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEec
Q 009188 351 EL-ECWKGQRTLKISDLEVTSDGKQIITMCKE---------SALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 351 ~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
+. ..+.. . .+..+.|+|+| .++++..+ ..|.++| .........+ ..+.. ++|+|+.++.++.
T Consensus 163 ~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~--~spdg~~l~~~~~ 234 (347)
T 2gop_A 163 EVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYA--VDSDGERILLYGK 234 (347)
T ss_dssp EEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEE--EEECSSCEEEEEC
T ss_pred eEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceee--ECCCCCEEEEEEc
Confidence 76 44433 2 67789999999 77776543 2466666 3333333333 44444 4999998888775
Q ss_pred C--------CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeE
Q 009188 421 N--------QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVN 492 (540)
Q Consensus 421 d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 492 (540)
+ ..|.+|| ++ ........+..... ....++ ++ ++++++.++.+++| +.+++.... ..+.+.|.
T Consensus 235 ~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~--~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~ 305 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVG--QAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIM 305 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEE--EEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEE
T ss_pred cccCCccccceEEEEC--CC-ceEeccccCCcccC--CccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEE
Confidence 4 3677887 32 33333333333221 113346 77 89999999999999 886665444 44578899
Q ss_pred EEEeCCCCCCEEEEEeCCCcE-EEecCCCCCcc
Q 009188 493 CVSWNPANPHMLASASDDRTI-RIWGLKDLNVK 524 (540)
Q Consensus 493 ~l~~~~~~~~~l~s~~~Dg~i-~iw~~~~~~~~ 524 (540)
+++|+| . ++++++.++.. .+|.+. ++..
T Consensus 306 ~~~~s~--~-~~~~~~~~~~~~~l~~~~-g~~~ 334 (347)
T 2gop_A 306 GFDVDE--I-VVYLKETATRLRELFTWD-GEEK 334 (347)
T ss_dssp EEEESS--S-EEEEEECSSSCCEEEEES-SSEE
T ss_pred eeeeeC--c-EEEEEcCCCChHHheEeC-CcEE
Confidence 999999 3 77787777765 777776 5533
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=1.5e-16 Score=148.36 Aligned_cols=243 Identities=10% Similarity=0.163 Sum_probs=178.1
Q ss_pred ccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec------CCCCCeEEEEE-CcCCCeEEEeeC-CCc
Q 009188 228 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS------GHQKPVSCVSW-SSDDQQLLTCGV-EEA 299 (540)
Q Consensus 228 ~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~-s~~~~~l~s~~~-dg~ 299 (540)
.+|-..+.+++++|+|+++++.+.++.|.+||.+ +. ....+. +|...+..+++ .+++.++++... ++.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-Cc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 3566789999999999988888888999999875 32 233332 24467899999 567776666543 789
Q ss_pred EEEEECCCCeEEEEeec-CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec-cccceEEEEEEccCCCEEEE
Q 009188 300 VRRWDVSSGNCLHVYEK-AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG-QRTLKISDLEVTSDGKQIIT 377 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~ 377 (540)
|.+|| .+++.+..+.. +...+.+++++++++.+++...++.|.+||..+.....+.. .....+..++++++|+.+++
T Consensus 102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99999 67777776643 34578999999999877777778899999987655544432 23346899999999998877
Q ss_pred EecCCeEEEEECCCceEEEeecC---CceeEEEEcCCCCEEEEEecCC-eEEEEEecCCceeeeEeeCCcCCeeEEEeee
Q 009188 378 MCKESALLLLDREAKVERYIEED---QTITSFSLSRDNKFLLVNLLNQ-EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 378 ~~~d~~i~~~d~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (540)
...++.|.+||............ ..+..++++++|+++++...++ .|.+||... ..+..+..+........ +.
T Consensus 181 ~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~-i~ 257 (286)
T 1q7f_A 181 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--QLISALESKVKHAQCFD-VA 257 (286)
T ss_dssp EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS--CEEEEEEESSCCSCEEE-EE
T ss_pred ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC--CEEEEEcccCCCCccee-EE
Confidence 77899999999877654444322 5788999999999888887776 999999654 44555544333222222 23
Q ss_pred ccCCCcEEEEeeCCCcEEEEECCCCc
Q 009188 454 GGLEQAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 454 ~~~~~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
++++|+++++ +.|+.|++|+.....
T Consensus 258 ~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 258 LMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred ECCCCcEEEE-CCCCeEEEEEccccc
Confidence 3788887777 679999999976543
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=6.6e-17 Score=155.79 Aligned_cols=266 Identities=14% Similarity=0.156 Sum_probs=189.3
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeC----------CCcEEEEEeecCCceEEEEEecC------CCCCeEEEEE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSN----------DRSAIIWEVDLNGGVTLKHKLSG------HQKPVSCVSW 284 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~ 284 (540)
.+.+..+..+..+ .++|+|||+++++++. ++.|.+||..+.. ....+.. +......++|
T Consensus 41 ~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~---~~~~i~~~~~~~~~g~~p~~i~~ 115 (361)
T 2oiz_A 41 GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT---FEKEISLPPKRVQGLNYDGLFRQ 115 (361)
T ss_dssp CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC---EEEEEEECTTBCCBCCCGGGEEE
T ss_pred CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc---EEEEEEcCccccccCCCcceEEE
Confidence 3455666666655 8999999999998862 5779999987543 3333322 2345678999
Q ss_pred CcCCCeEEEeeC--CCcEEEEECCCCeEEEE-eecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCC-ceEE-E----
Q 009188 285 SSDDQQLLTCGV--EEAVRRWDVSSGNCLHV-YEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGG-KELE-C---- 354 (540)
Q Consensus 285 s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~-~---- 354 (540)
+|+|++|+++.. +++|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|+... +... .
T Consensus 116 spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~ 193 (361)
T 2oiz_A 116 TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK 193 (361)
T ss_dssp CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC
T ss_pred CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecccc
Confidence 999999998874 57899999999998887 54332 2335567765 6788889999999999854 3332 1
Q ss_pred -eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee----------c----CCceeEEEEcCCCCEEEEEe
Q 009188 355 -WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE----------E----DQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 355 -~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----------~----~~~i~~~~~s~~~~~l~~~~ 419 (540)
...... ....+.+++++..++..+.++.+.++|.......... . ......++++|+++.++++.
T Consensus 194 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 194 QMFSVKD-DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp CCSCTTT-SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred ceEcCCC-CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 111111 1112334677888888888999999998654311110 0 11122378999988888765
Q ss_pred c-----------CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC--ceeEeecC
Q 009188 420 L-----------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC--DLIGALPG 486 (540)
Q Consensus 420 ~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~ 486 (540)
. .+.|.+||+.+. +.+..+..+. ...+. ++|+|++|++++. +.|.+||..++ +.+..+..
T Consensus 273 ~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia---~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 273 HPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMT---IDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp ESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEE---EETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred ccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEE---ECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 4 348999999988 7777777665 33333 3899999998887 99999999999 99999877
Q ss_pred CCCCeEEEEeCCCCC
Q 009188 487 HSGAVNCVSWNPANP 501 (540)
Q Consensus 487 h~~~v~~l~~~~~~~ 501 (540)
+......++++|+|.
T Consensus 346 ~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 346 AAEASLQVQFHPVGG 360 (361)
T ss_dssp SCSSEEEEEECCCSC
T ss_pred CCCCcEEEEecCCCC
Confidence 888889999999984
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=2.3e-17 Score=161.28 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=175.6
Q ss_pred EEEEecCCCCCeEE-----EEECcCCCeEEEeeC-CC--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC
Q 009188 268 LKHKLSGHQKPVSC-----VSWSSDDQQLLTCGV-EE--AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND 339 (540)
Q Consensus 268 ~~~~~~~h~~~v~~-----l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 339 (540)
....+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+...+....|+||++.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34556677766666 889999999999887 66 38889999998877776666555567899999999999999
Q ss_pred CcEEEEecCCceEEEeeccccceEEEE--EEccCCCEEEEEe----------------------cCCeEEEEECCCce-E
Q 009188 340 KSICMWELGGKELECWKGQRTLKISDL--EVTSDGKQIITMC----------------------KESALLLLDREAKV-E 394 (540)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~v~~i--~~~~~~~~l~~~~----------------------~d~~i~~~d~~~~~-~ 394 (540)
+.|++||+.+++.......+...+... .++++++.++... .+..|.+||+.++. .
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999998877665554444444333 3489999887532 34679999998766 4
Q ss_pred EEeecCCceeEEEEcC-CCCEEEEEecC------CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC-
Q 009188 395 RYIEEDQTITSFSLSR-DNKFLLVNLLN------QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE- 466 (540)
Q Consensus 395 ~~~~~~~~i~~~~~s~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~- 466 (540)
....+...+..+.|+| +|+.|+....+ ..|.++|..+. ....+..+..... +....++|+|+.|+..+.
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~-~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGES-CTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTEE-EEEEEECTTSSCEEEEEEE
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCcc-cccceECCCCCEEEEEecC
Confidence 4456677789999999 99988887753 36777777654 2233333332112 223345999997755443
Q ss_pred CC----cEEEEECCCCcee--EeecCCCCC---eEEEEeCCCCCCEEEEE--------eCCCcEEEecCCCCCcccc
Q 009188 467 DS----QVYIWHRASCDLI--GALPGHSGA---VNCVSWNPANPHMLASA--------SDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 467 dg----~i~iwd~~~~~~~--~~~~~h~~~---v~~l~~~~~~~~~l~s~--------~~Dg~i~iw~~~~~~~~~~ 526 (540)
++ .|++||+.+++.. ..+.++... ...++|+|+|..++++. +.+..|++||+.+++....
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV 335 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEE
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe
Confidence 22 3999999998743 333331100 11236999997555443 4567899999998876543
No 174
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=4.2e-17 Score=156.76 Aligned_cols=268 Identities=6% Similarity=-0.009 Sum_probs=172.6
Q ss_pred ccCCCCCCccccCCCcCcCCCCcceEEecccCc-CcEEEEEEecCCCeEE-EEeCCCcEEEEEeecCCceEEEEEecCC-
Q 009188 199 HNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHT-DEVWFLQFSHNGKYLA-SSSNDRSAIIWEVDLNGGVTLKHKLSGH- 275 (540)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~sp~g~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~h- 275 (540)
....+..+.+|+.. ..+.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.++ +....+..+
T Consensus 16 ~~~~~~~v~~~d~~-------~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~~~~~~~~ 85 (349)
T 1jmx_B 16 VTNYPNNLHVVDVA-------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNTFHANLSS 85 (349)
T ss_dssp EEETTTEEEEEETT-------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEESCC
T ss_pred EeCCCCeEEEEECC-------CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEEEEEEccc
Confidence 33445566666432 234455555443 2578999999998665 4556899999998755 333334322
Q ss_pred -----CCCeEEEEECcCCCeEEEeeCC------------CcEEEEECCCCeE---EEEeecCCCcEEEEEEecCCCEEEE
Q 009188 276 -----QKPVSCVSWSSDDQQLLTCGVE------------EAVRRWDVSSGNC---LHVYEKAGLGLVSCGWHPDRKWIFS 335 (540)
Q Consensus 276 -----~~~v~~l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~ 335 (540)
...+.+++|+|+|+++++++.+ +.|.+||+.+++. +..+.. ...+.+++|+|+++ +++
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYV 163 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEE
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEE
Confidence 2237889999999999998865 8999999988543 334433 34688899999999 666
Q ss_pred EeCCCcEEEEecCCceEEEeecccc------------------------ceEEEEEEccCCCEEEEEecC-CeEEEEECC
Q 009188 336 GANDKSICMWELGGKELECWKGQRT------------------------LKISDLEVTSDGKQIITMCKE-SALLLLDRE 390 (540)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~------------------------~~v~~i~~~~~~~~l~~~~~d-~~i~~~d~~ 390 (540)
++. .|.+||+.+++......... .....+++++++......... ..+..++..
T Consensus 164 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred ccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 543 49999998766554332221 034456666554221100000 111223443
Q ss_pred CceE---EEeecCCceeEEEEcC-CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC
Q 009188 391 AKVE---RYIEEDQTITSFSLSR-DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE 466 (540)
Q Consensus 391 ~~~~---~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~ 466 (540)
+... ........+.+++++| ++++++++ ++.|.+||+.+. +....+..... ... +.+++++++|++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~-~~~---~~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANLDHT-YYC---VAFDKKGDKLYLGGT 314 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEECSSC-CCE---EEECSSSSCEEEESB
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcCCCC-ccc---eEECCCCCEEEEecC
Confidence 3321 1122456788999999 99999988 889999999886 55555543322 222 334889988888888
Q ss_pred CCcEEEEECCCCceeEeecCC
Q 009188 467 DSQVYIWHRASCDLIGALPGH 487 (540)
Q Consensus 467 dg~i~iwd~~~~~~~~~~~~h 487 (540)
++.|++||..+++.+..++.+
T Consensus 315 ~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSEEEEEETTTTEEEEEEECS
T ss_pred CCeEEEEeccccceeeeeecC
Confidence 999999999999988887654
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=7.4e-16 Score=162.74 Aligned_cols=279 Identities=12% Similarity=0.095 Sum_probs=189.0
Q ss_pred cCCCeEEEEeCC-C--cEEEEEeecC-CceEEEEEe----cCCCCCeEEEEECcCCCeEEEeeCCC-----cEEEEECCC
Q 009188 241 HNGKYLASSSND-R--SAIIWEVDLN-GGVTLKHKL----SGHQKPVSCVSWSSDDQQLLTCGVEE-----AVRRWDVSS 307 (540)
Q Consensus 241 p~g~~l~tg~~d-g--~i~iwd~~~~-~~~~~~~~~----~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~ 307 (540)
|+|++++....+ + .-.+|..+.. +..+.+... .+|...+..++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 677777655432 2 1245655432 222222111 12444688999999999999876543 899999999
Q ss_pred CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCc----------------EEEEecCCceE---EEee-ccccceEEEEE
Q 009188 308 GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKS----------------ICMWELGGKEL---ECWK-GQRTLKISDLE 367 (540)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~---~~~~-~~~~~~v~~i~ 367 (540)
++.......+ ..+..++|+|||+.|+.++.++. |++|++.++.. .... ..+...+..+.
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 9877643222 23567899999999999888766 99999976542 2222 22344578899
Q ss_pred EccCCCEEEEEec-----CCeEEEEECCC------c---eEEEeecCCceeEEEEcCCCCEEEEEecC----CeEEEEEe
Q 009188 368 VTSDGKQIITMCK-----ESALLLLDREA------K---VERYIEEDQTITSFSLSRDNKFLLVNLLN----QEIHLWNI 429 (540)
Q Consensus 368 ~~~~~~~l~~~~~-----d~~i~~~d~~~------~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~ 429 (540)
|+|||++++..+. +..+++||..+ + ......+...+.. .|+|+|+.|+..+.. +.|.+||+
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999999988775 67899999875 3 2444444444444 588999888776653 36999998
Q ss_pred cCCce-eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC--cEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEE
Q 009188 430 EGEVK-LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS--QVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLAS 506 (540)
Q Consensus 430 ~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 506 (540)
.+... ....+..+.... .+....+++++.++++...|+ .|++||+.+++.+..+..+.+.|..++++|+++.++++
T Consensus 319 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKD-VLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp TSCCGGGCEEEECCCSSC-EEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred CCCCcccceeccCCCCCC-eEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence 76521 223444443321 233233356778888898888 46677877888888888888889999999988655555
Q ss_pred EeC---CCcEEEecCCCCC
Q 009188 507 ASD---DRTIRIWGLKDLN 522 (540)
Q Consensus 507 ~~~---Dg~i~iw~~~~~~ 522 (540)
.+. .+.|+.||+.+++
T Consensus 398 ~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECSSCCCEEEEEETTSSS
T ss_pred EeCCCCCCEEEEEECCCCc
Confidence 443 5789999999877
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=5.7e-17 Score=172.04 Aligned_cols=293 Identities=9% Similarity=0.026 Sum_probs=188.9
Q ss_pred cceEEecccCcCc-----EEEEEEecCCCeEEEEeCC---------CcEEEEEeecCCceEEEEEecCCCCCeEEEEECc
Q 009188 221 SRTLQILQGHTDE-----VWFLQFSHNGKYLASSSND---------RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSS 286 (540)
Q Consensus 221 ~~~~~~l~~h~~~-----V~~~~~sp~g~~l~tg~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 286 (540)
.+....+.+|... ...++|||||++|++++.+ +.+.+||+.++ + ...+..|.+.+...+|||
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~---~-~~~l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 46 GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---Q-LITEERIPNNTQWVTWSP 121 (740)
T ss_dssp CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---E-ECCSSCCCTTEEEEEECS
T ss_pred CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC---c-EEEcccCCCcceeeEECC
Confidence 3455667777643 2447899999999998876 56679998865 2 234677888999999999
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeEEEEee-cCCCcE-----------------EEEEEecCCCEEEEEeCCC--------
Q 009188 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYE-KAGLGL-----------------VSCGWHPDRKWIFSGANDK-------- 340 (540)
Q Consensus 287 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v-----------------~~~~~~~~~~~l~~~~~dg-------- 340 (540)
||+.||.+. ++.|++|++.+++..+... ++...+ ..+.|+|||+.|+.++.|.
T Consensus 122 dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 122 VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 999999885 7899999998887554321 222222 2488999999999875322
Q ss_pred ----------------------------cEEEEecCC---c---eEEEeec-----cccceEEEEEEccCCCEEEEEec-
Q 009188 341 ----------------------------SICMWELGG---K---ELECWKG-----QRTLKISDLEVTSDGKQIITMCK- 380 (540)
Q Consensus 341 ----------------------------~i~iwd~~~---~---~~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~- 380 (540)
.|++||+.+ + ....... .+...+..++|+|||+.++....
T Consensus 201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r 280 (740)
T 4a5s_A 201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR 280 (740)
T ss_dssp EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES
T ss_pred EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC
Confidence 478899887 6 4444332 25567899999999997765543
Q ss_pred ---CCeEEEEECCCce--------EEE--eecCCcee-----EEEEcCCCCEEE-EEec-CC--eEEEEEecCCceeeeE
Q 009188 381 ---ESALLLLDREAKV--------ERY--IEEDQTIT-----SFSLSRDNKFLL-VNLL-NQ--EIHLWNIEGEVKLVAK 438 (540)
Q Consensus 381 ---d~~i~~~d~~~~~--------~~~--~~~~~~i~-----~~~~s~~~~~l~-~~~~-dg--~i~i~d~~~~~~~~~~ 438 (540)
+..|.+||..++. ... ..+...+. ...|+|||+.++ ..+. +| .|++||..+. .. ..
T Consensus 281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~-~~-~~ 358 (740)
T 4a5s_A 281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK-DC-TF 358 (740)
T ss_dssp STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS-SC-EE
T ss_pred CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC-ce-Ee
Confidence 2379999987643 111 23444443 789999999877 5543 44 5777887764 22 23
Q ss_pred eeCCcCCeeEEEeeeccCCCcEEEEeeC----CC--cEEEEECCCCceeEeecC----CCCCeEEEEeCCCCCCEEEEEe
Q 009188 439 YKGHKRSRFVIRSCFGGLEQAFIASGSE----DS--QVYIWHRASCDLIGALPG----HSGAVNCVSWNPANPHMLASAS 508 (540)
Q Consensus 439 ~~~~~~~~~~i~~~~~~~~~~~l~s~s~----dg--~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~ 508 (540)
+......+..+ ..++ ++.++++++. .+ .|+..++..+.....+.. ....+..+.|+|++..++++.+
T Consensus 359 lT~g~~~v~~~--~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 359 ITKGTWEVIGI--EALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp SCCSSSCEEEE--EEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred cccCCEEEEEE--EEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 33223222222 2123 3334444443 23 455556655544333432 2457889999999975555554
Q ss_pred CC--CcEEEecCCCCCc
Q 009188 509 DD--RTIRIWGLKDLNV 523 (540)
Q Consensus 509 ~D--g~i~iw~~~~~~~ 523 (540)
.. ..+.+++..+++.
T Consensus 436 ~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 436 GPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp SBSSCEEEEEETTTTEE
T ss_pred CCCCCEEEEEECCCCcE
Confidence 43 3577888776654
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.76 E-value=1.5e-14 Score=135.50 Aligned_cols=282 Identities=12% Similarity=0.092 Sum_probs=194.3
Q ss_pred cccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC
Q 009188 227 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
+..+...+.+++++++|++.++...++.|.+||.. + ... ......+...+.+++++++|.+.++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G-KIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-CeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 44566789999999999977776667889999876 3 222 22233456789999999999988887778889999976
Q ss_pred CCeEEEEee--cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee-ccccceEEEEEEccCCCEEEEEecCCe
Q 009188 307 SGNCLHVYE--KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK-GQRTLKISDLEVTSDGKQIITMCKESA 383 (540)
Q Consensus 307 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~ 383 (540)
++. ..+. .....+.++++++++..+++...++.|..||. ++...... ......+..++++++|..+++...++.
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 443 2232 24557899999999987777777889999998 44443332 223446899999999988877777889
Q ss_pred EEEEECCCceEEE--eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEE
Q 009188 384 LLLLDREAKVERY--IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI 461 (540)
Q Consensus 384 i~~~d~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 461 (540)
|..+|........ ......+..++++++++++++...++.|..||. +.............. +..+..+++|++.
T Consensus 164 i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~---~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 164 IGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNAR---PHAITAGAGIDLW 239 (299)
T ss_dssp EEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC---EEEEEECSTTCEE
T ss_pred EEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCC---ceeEEECCCCCEE
Confidence 9999993333322 123456889999999997777767889999998 432211111212222 2233337788877
Q ss_pred EEeeCCCcEEEEECCCCceeE-eecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 462 ASGSEDSQVYIWHRASCDLIG-ALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 462 ~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
++...++.|..||. +++... .+..+...+.++++ +++. ++++.+ .+.|..++.++++
T Consensus 240 v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~-l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 240 FTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGET-IWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSC-EEEEET-TTEEEEEEEC---
T ss_pred EeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCC-EEEEec-CCcEEEEEcCccc
Confidence 77667889999998 454332 23445678999999 8775 666554 5677778877654
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=3.9e-15 Score=139.52 Aligned_cols=244 Identities=9% Similarity=0.025 Sum_probs=175.2
Q ss_pred ecCCCCCeEEEEECcCCC-eEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc
Q 009188 272 LSGHQKPVSCVSWSSDDQ-QLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK 350 (540)
Q Consensus 272 ~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 350 (540)
+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++|+.+++...++.|.+||..++
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 344566688999999998 7778888999999999877 6667677778999999999998777767789999999766
Q ss_pred eEEEeeccc----cceEEEEEEccCCCEEEEE----e-------------cCCeEEEEECCCceEEEeecCCceeEEEEc
Q 009188 351 ELECWKGQR----TLKISDLEVTSDGKQIITM----C-------------KESALLLLDREAKVERYIEEDQTITSFSLS 409 (540)
Q Consensus 351 ~~~~~~~~~----~~~v~~i~~~~~~~~l~~~----~-------------~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s 409 (540)
......... ...+.+++++|+|+.+++. + ..+.|..++.................++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEEC
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEEC
Confidence 655443221 1245679999999988873 2 135777777764444455566678899999
Q ss_pred CCCCEEEEEecCCeEEEEEecCCcee---eeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC
Q 009188 410 RDNKFLLVNLLNQEIHLWNIEGEVKL---VAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG 486 (540)
Q Consensus 410 ~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 486 (540)
|+++.+++.+.++.|.+|++...... ...+..+..... .+.++++|+++++. ++.|.+||.. ++.+..+..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~---~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTD---GLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCC---SEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCC---eEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 99999877777899999999632232 223311211111 22337888876666 7899999986 888888887
Q ss_pred CCCCeEEEEe-CCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 487 HSGAVNCVSW-NPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 487 h~~~v~~l~~-~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
+.. +++++| .|++. .|+.++.+ .+.-+++++.++.+.
T Consensus 255 ~~~-~~~~~f~~~d~~-~L~v~t~~-~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 255 PQT-TSNLCFGGPEGR-TLYMTVST-EFWSIETNVRGLEHH 292 (296)
T ss_dssp SSC-CCEEEEESTTSC-EEEEEETT-EEEEEECSCCBCCC-
T ss_pred CCC-ceeEEEECCCCC-EEEEEcCC-eEEEEEccccccccc
Confidence 777 999999 57775 66666665 455566666666543
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=4e-16 Score=163.76 Aligned_cols=248 Identities=8% Similarity=-0.001 Sum_probs=177.4
Q ss_pred ecCCCCCeEEEEECcCCCeEEEe--eCCCcEEEEECCCCeEEEEeecCCCcEE---------EEEEe--cCCCE-EEEEe
Q 009188 272 LSGHQKPVSCVSWSSDDQQLLTC--GVEEAVRRWDVSSGNCLHVYEKAGLGLV---------SCGWH--PDRKW-IFSGA 337 (540)
Q Consensus 272 ~~~h~~~v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~ 337 (540)
+.+|...+..++|++++-++++. +.++...||....+.....+..+...+. ...|+ |||+. |+.++
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 45788899999999887666766 5578899998655555666666665555 56666 99998 77665
Q ss_pred C-CCcEEEEecC--C-ceEEEeecc----ccceEEEEEEccCCCEEEEEecC----------CeEEEEECCC------ce
Q 009188 338 N-DKSICMWELG--G-KELECWKGQ----RTLKISDLEVTSDGKQIITMCKE----------SALLLLDREA------KV 393 (540)
Q Consensus 338 ~-dg~i~iwd~~--~-~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d----------~~i~~~d~~~------~~ 393 (540)
. +..|.++++. + +........ +...+..++|+|||+.|++++.+ ..|++||..+ +.
T Consensus 99 ~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp TTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred CCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 4 5678888876 4 555444442 45578899999999999988876 5899999987 54
Q ss_pred -EEEe-ecCCceeEEEEcCCCCEEEEEecC--------CeEEEEEecC-C--ceeeeEeeCCcCCeeEEEeeeccCCCcE
Q 009188 394 -ERYI-EEDQTITSFSLSRDNKFLLVNLLN--------QEIHLWNIEG-E--VKLVAKYKGHKRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 394 -~~~~-~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~-~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 460 (540)
.... .+...+..++|+|||++|+.++.+ ..|++||+.. + ........++..... ...++|+|++
T Consensus 179 ~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~---~~~~spdg~l 255 (662)
T 3azo_A 179 VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA---QAEWAPDGSL 255 (662)
T ss_dssp SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE---EEEECTTSCE
T ss_pred eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc---ceEECCCCeE
Confidence 4444 456678889999999999988755 3799999984 3 133333333334332 3344899998
Q ss_pred EEEeeCCC--cEEEEECCCCceeEeecCCCCC--------eEEEEeCCCCCCEEEEEeCCCcEEEe--cCCCCCcc
Q 009188 461 IASGSEDS--QVYIWHRASCDLIGALPGHSGA--------VNCVSWNPANPHMLASASDDRTIRIW--GLKDLNVK 524 (540)
Q Consensus 461 l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~--------v~~l~~~~~~~~~l~s~~~Dg~i~iw--~~~~~~~~ 524 (540)
+++++.++ .|++||..+++.......+... +..++|+|++. ++++++. +.+++| |+.+++..
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~~~ 329 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESGELV 329 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTTEEE
T ss_pred EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCCcEE
Confidence 88888888 6777777677765444433222 56788998885 8999988 999999 65555543
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.9e-15 Score=143.90 Aligned_cols=239 Identities=11% Similarity=0.086 Sum_probs=171.0
Q ss_pred cCcEEEEEEecCCCeEEEEeCC------------------------CcEEEEEeecCCceEEEEEec-CCCCCeEEEEEC
Q 009188 231 TDEVWFLQFSHNGKYLASSSND------------------------RSAIIWEVDLNGGVTLKHKLS-GHQKPVSCVSWS 285 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~d------------------------g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s 285 (540)
-+.|.+++++|+|+++++.+.+ +.|.+||..++. ....+. ++-..+..++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE---ILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC---EEEEECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe---EEeccCCCccCCceEEEEC
Confidence 4679999999999999888777 479999876542 233332 455679999999
Q ss_pred cCCCeEEEeeCCCcEEEEECCCCe-EEEEee---------cCCCcEEEEEEec-CCCEEEEEe-CCCcEEEEecCCceEE
Q 009188 286 SDDQQLLTCGVEEAVRRWDVSSGN-CLHVYE---------KAGLGLVSCGWHP-DRKWIFSGA-NDKSICMWELGGKELE 353 (540)
Q Consensus 286 ~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~ 353 (540)
++|+++++...++.|++||..... .+..+. .+-.....++++| ++..+++.+ .++.|++|+..+....
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~ 179 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVT 179 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEE
Confidence 999988888889999999975442 455542 2334688999999 787777775 6899999996655444
Q ss_pred Eeec---------cccceEEEEEEccC-CCEEEEEecCCeEEEEECCCce-EEEe---ecCCceeEEEEcCCCCEEEE--
Q 009188 354 CWKG---------QRTLKISDLEVTSD-GKQIITMCKESALLLLDREAKV-ERYI---EEDQTITSFSLSRDNKFLLV-- 417 (540)
Q Consensus 354 ~~~~---------~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~~d~~~~~-~~~~---~~~~~i~~~~~s~~~~~l~~-- 417 (540)
.+.. .....+..++++|+ +..+++...++.|++||..+.. .... .....+.+++++| +..+.+
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 3321 12234889999998 6777777788999999998433 3333 2456788899999 333333
Q ss_pred -----EecCCeEEEEEecCCceeeeEee---CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 418 -----NLLNQEIHLWNIEGEVKLVAKYK---GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 418 -----~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
...+..|++||..++ ..+..+. .+......+ .++++|.++++...++.|++|++..
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~i---a~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHDI---VASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEEE---EECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeEE---EECCCCCEEEEECCCCEEEEEeCCc
Confidence 333458999998876 5666653 333333333 3388998889999999999999754
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=3.6e-16 Score=164.63 Aligned_cols=280 Identities=11% Similarity=0.015 Sum_probs=182.5
Q ss_pred cCCCeEEEEeCCC---cEEEEEeecCC-ceEEEEEe----cCCCCCeEEEEECcCCCeEEE-----eeCCCcEEEEECCC
Q 009188 241 HNGKYLASSSNDR---SAIIWEVDLNG-GVTLKHKL----SGHQKPVSCVSWSSDDQQLLT-----CGVEEAVRRWDVSS 307 (540)
Q Consensus 241 p~g~~l~tg~~dg---~i~iwd~~~~~-~~~~~~~~----~~h~~~v~~l~~s~~~~~l~s-----~~~dg~i~iwd~~~ 307 (540)
|+|++++....++ .-.||..+..+ ..+.+... .+|...+..++|||||++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6788877765543 45667665322 22222211 245557899999999999984 44456899999999
Q ss_pred CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCc-------------EEEEecCCce----EEEeeccccceEEEEEEcc
Q 009188 308 GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKS-------------ICMWELGGKE----LECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~ 370 (540)
++.+..-.........++|+|||+.|+.++.|.. |++|++.++. +......+...+..+.|+|
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp 236 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR 236 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence 9864110111111267899999999999988776 9999997654 2222222334688999999
Q ss_pred CCCEEEEEecCC----eEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEec----CCeEEEEEecCCce-eeeEee
Q 009188 371 DGKQIITMCKES----ALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLL----NQEIHLWNIEGEVK-LVAKYK 440 (540)
Q Consensus 371 ~~~~l~~~~~d~----~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~ 440 (540)
||++++.++.++ .|++++..+.. .....+...+....+ ++|+ ++..+. ++.|.+||+.+... ....+.
T Consensus 237 DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 314 (695)
T 2bkl_A 237 DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV 314 (695)
T ss_dssp TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence 999998887666 67777765433 445555555666666 5666 554443 57899999876421 112333
Q ss_pred CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC-CCceeEeecCC-CCCeEEEEeCCCCCCEEEEEeC---CCcEEE
Q 009188 441 GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA-SCDLIGALPGH-SGAVNCVSWNPANPHMLASASD---DRTIRI 515 (540)
Q Consensus 441 ~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~---Dg~i~i 515 (540)
.+.... .+....++ ++.++++...|+..++|.+. +++....+..+ .+.|..++++|+++.++++.+. .++|++
T Consensus 315 ~~~~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 315 PEDSSA-SLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp CCCSSC-EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred cCCCCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 332111 12222223 67889999999988888654 46666666655 6778889999988645544443 578999
Q ss_pred ecCCCCCcc
Q 009188 516 WGLKDLNVK 524 (540)
Q Consensus 516 w~~~~~~~~ 524 (540)
||+.+++..
T Consensus 393 ~d~~~g~~~ 401 (695)
T 2bkl_A 393 TSVSTGKSE 401 (695)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcEE
Confidence 999987753
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=5.7e-14 Score=142.17 Aligned_cols=300 Identities=11% Similarity=0.056 Sum_probs=206.3
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEee--cCCceEEEEEecCCCCCeEEEEEC----cCCCeEEEe
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD--LNGGVTLKHKLSGHQKPVSCVSWS----SDDQQLLTC 294 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~s----~~~~~l~s~ 294 (540)
.+.+..+.. ...+..+.|+|||+++++++.|+.|.+||+. +. +....+... .....++|+ |||++++++
T Consensus 187 ~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~ 261 (567)
T 1qks_A 187 YEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIG-SEARSIETSKMEGWEDKYAIAG 261 (567)
T ss_dssp CCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECC-SEEEEEEECCSTTCTTTEEEEE
T ss_pred CeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEecC-CCCceeEEccccCCCCCEEEEE
Confidence 445555543 2356799999999999999999999999984 33 334445443 346789999 699988887
Q ss_pred eC-CCcEEEEECCCCeEEEEeecC-----------CCcEEEEEEecCCCEEE-EEeCCCcEEEEecCCce-EEEeecccc
Q 009188 295 GV-EEAVRRWDVSSGNCLHVYEKA-----------GLGLVSCGWHPDRKWIF-SGANDKSICMWELGGKE-LECWKGQRT 360 (540)
Q Consensus 295 ~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~-~~~~~~~~~ 360 (540)
+. ++.|.|+|..+.+.+..+... ...+..+..++++..++ ....+|.|.++|..... +........
T Consensus 262 n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~ 341 (567)
T 1qks_A 262 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 341 (567)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc
Confidence 65 589999999999998877532 12577888888766544 44566899999986532 111111222
Q ss_pred ceEEEEEEccCCCEEEEEe-cCCeEEEEECCCceEE-Eeec-C---CceeEEE-EcCCCCEEE-EEe-cCCeEEEEEecC
Q 009188 361 LKISDLEVTSDGKQIITMC-KESALLLLDREAKVER-YIEE-D---QTITSFS-LSRDNKFLL-VNL-LNQEIHLWNIEG 431 (540)
Q Consensus 361 ~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~-~~~~-~---~~i~~~~-~s~~~~~l~-~~~-~dg~i~i~d~~~ 431 (540)
....++.|+|+|+++++++ .++.|.++|..+.... .... . .+-.... ++|++..+. ++. .++.|.++|...
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 3577889999999987766 6789999999987632 2221 1 1112233 578755444 443 468999999876
Q ss_pred C------ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC-------CCcEEEEECCCC-----ce-eEeec-------
Q 009188 432 E------VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE-------DSQVYIWHRASC-----DL-IGALP------- 485 (540)
Q Consensus 432 ~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~-------dg~i~iwd~~~~-----~~-~~~~~------- 485 (540)
. .+.+.++.........+. .+|+++++++... .+.|.++|+.+. .. +..+.
T Consensus 422 ~~~~~~~~kvv~~i~~~g~g~~~i~---~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 422 EGHPDNAWKILDSFPALGGGSLFIK---THPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEE---CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCccccCEEEEEEecCCCCCEEEE---eCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 2 256666665433322232 3889999888663 459999999877 21 12332
Q ss_pred -CCCCCeEEEEeCCCCCCEEEEEe----CCCcEEEecCCCCCcccccc
Q 009188 486 -GHSGAVNCVSWNPANPHMLASAS----DDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 486 -~h~~~v~~l~~~~~~~~~l~s~~----~Dg~i~iw~~~~~~~~~~~~ 528 (540)
.-...+..+.|+|+|..+++|.. .++.|.|+|.+++++.....
T Consensus 499 ~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 499 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 12457899999999987777754 47999999999998876544
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=1.4e-16 Score=156.03 Aligned_cols=241 Identities=12% Similarity=0.019 Sum_probs=162.1
Q ss_pred eEEEEECcCCCeEEEeeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe
Q 009188 279 VSCVSWSSDDQQLLTCGVE---EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW 355 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 355 (540)
+..++|+|+|++|+.+... ..|.+||+.+++.......+......+.|+|||+.|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6778999999998877543 3688999988876554433332233378999999999999999999999988766554
Q ss_pred eccccceEEE-------------------EEEccCCCEEEEE-----ecCCeEEEEECCCce-EEEeecCCceeEEEEcC
Q 009188 356 KGQRTLKISD-------------------LEVTSDGKQIITM-----CKESALLLLDREAKV-ERYIEEDQTITSFSLSR 410 (540)
Q Consensus 356 ~~~~~~~v~~-------------------i~~~~~~~~l~~~-----~~d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s~ 410 (540)
...+...... ..++|+++.++.. ..+..|.+||+.++. .....+...+..+.|+|
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp 197 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRP 197 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECC
Confidence 4433222222 3456777666544 356689999998765 44445677789999999
Q ss_pred -CCCEEEEEecC------CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-----CcEEEEECCCC
Q 009188 411 -DNKFLLVNLLN------QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED-----SQVYIWHRASC 478 (540)
Q Consensus 411 -~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 478 (540)
+++.++..+.+ ..|.+||+.+. . ...+..+.. ...+....++|+|++|+.++.+ +.|++||+.++
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 198 FDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAE-GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp TEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCT-TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCC-CccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 78877766543 35888887654 2 222222211 2233344558999987776554 44999999988
Q ss_pred ceeEeecCCCCCeEEEEeCC-CCCCEEEEEe----------------CCCcEEEecCCCCCcccc
Q 009188 479 DLIGALPGHSGAVNCVSWNP-ANPHMLASAS----------------DDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 479 ~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~----------------~Dg~i~iw~~~~~~~~~~ 526 (540)
+...... .. ... +.|+| ++. ++++++ .++.|++||+.+++....
T Consensus 275 ~~~~l~~-~~-~~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 275 ENEEVMV-MP-PCS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp CEEEEEE-CC-SEE-EEEECSSSS-EEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred CeEEeee-CC-CCC-CCccCCCCc-eEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 7544322 11 233 88999 996 676654 347899999988876543
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=4.8e-15 Score=136.85 Aligned_cols=241 Identities=7% Similarity=-0.026 Sum_probs=170.3
Q ss_pred CeEEEEECcCCCeEE-EeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee
Q 009188 278 PVSCVSWSSDDQQLL-TCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK 356 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 356 (540)
...+++++++|++++ +.+.++.|.+||..++............+.+++++++++.+++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999998777 546788999999765543322223334678899999998555555 889999999876655443
Q ss_pred ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe--ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce
Q 009188 357 GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI--EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
......+..++++++|+.+++...++.|.+|+..+...... .....+..++++++|+++++...++.|.+||..+...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 33335789999999999777777889999998765442222 2234678999999999777777788999999876532
Q ss_pred eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEE
Q 009188 435 LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIR 514 (540)
Q Consensus 435 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~ 514 (540)
. ........... .+..+++|.++++...++.|.+||............+...+.+++++|++. ++++...++.|+
T Consensus 184 ~-~~~~~~~~~p~---~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~ 258 (270)
T 1rwi_B 184 V-VLPFTDITAPW---GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVV 258 (270)
T ss_dssp E-ECCCSSCCSEE---EEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEE
T ss_pred E-eecccCCCCce---EEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EEEEECCCCEEE
Confidence 2 21112212222 233377888888777889999999876554433333446789999999995 899999999999
Q ss_pred EecCCCCCcc
Q 009188 515 IWGLKDLNVK 524 (540)
Q Consensus 515 iw~~~~~~~~ 524 (540)
++++...+..
T Consensus 259 ~~~~~~~~~~ 268 (270)
T 1rwi_B 259 KLTSLEHHHH 268 (270)
T ss_dssp EECCCGGGSC
T ss_pred EEcCCCcccc
Confidence 9999876544
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=8.6e-15 Score=139.15 Aligned_cols=261 Identities=9% Similarity=0.009 Sum_probs=182.1
Q ss_pred CCCcEEEEEeecCCceEEEEEec------CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 009188 251 NDRSAIIWEVDLNGGVTLKHKLS------GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSC 324 (540)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 324 (540)
.+++|.+||..++ +....+. ........+.+. +++..++...++.|.+||..+++.+..+. .......+
T Consensus 15 ~~~~l~~~d~~t~---~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATC---EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTT---EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred CCceEEEEECCCC---EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence 4789999998765 3322221 122446778874 45566666678999999999999988885 34578899
Q ss_pred EEecCCCEEEEEe-CCCcEEEEecCCceEEEeecccc-----ceEEEEEEccCCCEEEEEe--cCCeEEEEECCCce-EE
Q 009188 325 GWHPDRKWIFSGA-NDKSICMWELGGKELECWKGQRT-----LKISDLEVTSDGKQIITMC--KESALLLLDREAKV-ER 395 (540)
Q Consensus 325 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~~~~--~d~~i~~~d~~~~~-~~ 395 (540)
+++++++ ++++. .++.|.+||..+.++........ .....+++ . +..++++. .++.|.++|..+.. ..
T Consensus 90 ~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 90 HFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 9999984 55555 88999999998877664332221 13456666 3 44555554 48899999998866 34
Q ss_pred EeecCCceeEEEEcCCCCEEEEEecC----------CeEEEEEecCCceeeeEeeCCcC-CeeEEEeeeccCCCcEEEEe
Q 009188 396 YIEEDQTITSFSLSRDNKFLLVNLLN----------QEIHLWNIEGEVKLVAKYKGHKR-SRFVIRSCFGGLEQAFIASG 464 (540)
Q Consensus 396 ~~~~~~~i~~~~~s~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~ 464 (540)
..........+.++|+|++++++..+ +.|.++|..+. +....+..... .... ..++++++.++++
T Consensus 167 ~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~---la~~~d~~~lyv~ 242 (328)
T 3dsm_A 167 ELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSE---VQLNGTRDTLYWI 242 (328)
T ss_dssp EEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEE---EEECTTSCEEEEE
T ss_pred EEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCcee---EEEecCCCEEEEE
Confidence 44445567889999999977776654 78999999876 55555543211 2122 2337888888776
Q ss_pred eCCCcEEEEECCCCceeEe--ecCCCCCeEEEEeCCCCCCEEEEE----eCCCcEEEecCCCCCcccc
Q 009188 465 SEDSQVYIWHRASCDLIGA--LPGHSGAVNCVSWNPANPHMLASA----SDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 465 s~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~----~~Dg~i~iw~~~~~~~~~~ 526 (540)
.. .|++||..+++.... +..+......++++|++.+++++. ..++.|.+||.. +++...
T Consensus 243 ~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 55 899999998876421 222246789999999665688887 678999999998 777654
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=4.5e-14 Score=142.90 Aligned_cols=273 Identities=12% Similarity=0.140 Sum_probs=194.7
Q ss_pred cCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC--CCeEEEEeecCC
Q 009188 241 HNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS--SGNCLHVYEKAG 318 (540)
Q Consensus 241 p~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~ 318 (540)
|.+.++++...+++|.++|..+. +....+.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~---~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTY---EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC---CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-
T ss_pred CCceEEEEeCCCCeEEEEECCCC---eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-
Confidence 44556777788899999998765 34444443 3457799999999999999999999999996 88888877654
Q ss_pred CcEEEEEEe----cCCCEEEEEeC-CCcEEEEecCCceEEEeeccc-----------cceEEEEEEccCCCEEEE-EecC
Q 009188 319 LGLVSCGWH----PDRKWIFSGAN-DKSICMWELGGKELECWKGQR-----------TLKISDLEVTSDGKQIIT-MCKE 381 (540)
Q Consensus 319 ~~v~~~~~~----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l~~-~~~d 381 (540)
.....++|+ |||++++++.. ++.|.++|..+.+........ ...+..+..++++..++. ....
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 456899999 69998887765 489999999876665433211 226778888888766554 4467
Q ss_pred CeEEEEECCCce---EEEeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeC-CcCCe--eEEEeeec
Q 009188 382 SALLLLDREAKV---ERYIEEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKG-HKRSR--FVIRSCFG 454 (540)
Q Consensus 382 ~~i~~~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-~~~~~--~~i~~~~~ 454 (540)
|.|.++|..... ...+........+.|+|++++++++. .++.|.++|+.+. +....+.. ...+. .... +.
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~--~~ 396 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGAN--FV 396 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEE--EE
T ss_pred CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCcccee--eE
Confidence 999999987642 33344555677899999999987766 5789999999987 55555543 21111 1122 23
Q ss_pred cCC-CcEEEEee-CCCcEEEEECCC-------CceeEeecCCCCCeEEEEeCCCCCCEEEEEeC------CCcEEEecCC
Q 009188 455 GLE-QAFIASGS-EDSQVYIWHRAS-------CDLIGALPGHSGAVNCVSWNPANPHMLASASD------DRTIRIWGLK 519 (540)
Q Consensus 455 ~~~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------Dg~i~iw~~~ 519 (540)
.|+ +...+++. .++.|.++|..+ .+.+.++......-..+..+|+++++.++... .++|.++|+.
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 566 44444443 468999999988 67888887654444557899999755544421 4599999998
Q ss_pred CC
Q 009188 520 DL 521 (540)
Q Consensus 520 ~~ 521 (540)
+.
T Consensus 477 ~~ 478 (567)
T 1qks_A 477 AM 478 (567)
T ss_dssp GC
T ss_pred cc
Confidence 77
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=8.7e-15 Score=140.53 Aligned_cols=225 Identities=14% Similarity=0.104 Sum_probs=158.7
Q ss_pred CCeEEEEECcCCCeEEEee---------CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC---C--cE
Q 009188 277 KPVSCVSWSSDDQQLLTCG---------VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND---K--SI 342 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i 342 (540)
..+..+.+ ||+.++... .++.|.+||+.+++.... ..+..++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34666777 788777642 256799999998875433 467889999999999887654 3 48
Q ss_pred EEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC---------------------------CeEEEEECCCceE-
Q 009188 343 CMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE---------------------------SALLLLDREAKVE- 394 (540)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------------------------~~i~~~d~~~~~~- 394 (540)
.+||+.+++......... +..++|+|||+.|+.++.+ ..|++||+.++..
T Consensus 88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888988877666555443 8999999999999888642 5789999987664
Q ss_pred EEeecCCceeEEEEcCCCCEEEEEecCC-------eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC
Q 009188 395 RYIEEDQTITSFSLSRDNKFLLVNLLNQ-------EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED 467 (540)
Q Consensus 395 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d 467 (540)
...... .+..++|+|+| +++++..++ ...+|.+.++ .. ..+..+ ... . .. +|+|++|+.++.+
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~-~~l~~~-~~~--~--~~-spdg~~l~~~~~~ 235 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KE-EKMFEK-VSF--Y--AV-DSDGERILLYGKP 235 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EE-EEEEEE-ESE--E--EE-EECSSCEEEEECC
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ce-EEeccC-cce--e--eE-CCCCCEEEEEEcc
Confidence 333333 88899999999 777775542 3445544432 33 233222 221 1 12 7899988877654
Q ss_pred --------CcEEEEECCCCceeEeecCCCCCeEE-EEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 468 --------SQVYIWHRASCDLIGALPGHSGAVNC-VSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 468 --------g~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
..|++|| +++......+|...+.. +.|+ ++ ++++++.++.+++| +.+++....
T Consensus 236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~~~~ 297 (347)
T 2gop_A 236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEIKPI 297 (347)
T ss_dssp SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSEEEE
T ss_pred ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCceEEE
Confidence 4688888 66665555667788886 9999 65 88999999999999 886655433
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=1.7e-14 Score=152.24 Aligned_cols=241 Identities=14% Similarity=0.147 Sum_probs=165.2
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCC-----cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc----
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDR-----SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA---- 299 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~---- 299 (540)
+|...+..++|||||++||.++.++ .|++||+.++.... ..+.. ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~--~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--EEEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc--ccccC--cccceEEEEeCCCEEEEEEECCccccc
Confidence 4555789999999999999876543 89999998653211 12222 22667999999999999988766
Q ss_pred ------------EEEEECCCCeE--EEEeec--CCCcEEEEEEecCCCEEEEEeC-----CCcEEEEecCC------c--
Q 009188 300 ------------VRRWDVSSGNC--LHVYEK--AGLGLVSCGWHPDRKWIFSGAN-----DKSICMWELGG------K-- 350 (540)
Q Consensus 300 ------------i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~-- 350 (540)
|++|++.+++. ...+.. +...+..+.|+|||++|+.++. +..|++||+.+ +
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 99999988762 222332 4455789999999999987765 56899999975 3
Q ss_pred eEEEeeccccceEEEEEEccCCCEEEEEecC----CeEEEEECCCce----EEEeecCC--ceeEEEEcCCCCEEEEEec
Q 009188 351 ELECWKGQRTLKISDLEVTSDGKQIITMCKE----SALLLLDREAKV----ERYIEEDQ--TITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 351 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----~~i~~~d~~~~~----~~~~~~~~--~i~~~~~s~~~~~l~~~~~ 420 (540)
....+..... .+.. .|+++|..++..+.. +.|.+||..+.. .....+.. .+..++|++++.++++...
T Consensus 278 ~~~~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 278 KWVKLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp CCEEEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ceEEeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 3444443332 2333 488899988877653 369999988753 44444433 6888999988888888888
Q ss_pred CCe--EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe----eCCCcEEEEECCCCc
Q 009188 421 NQE--IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG----SEDSQVYIWHRASCD 479 (540)
Q Consensus 421 dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~----s~dg~i~iwd~~~~~ 479 (540)
++. |.+|++.++ .....+..+... +....+++++..++.. ...+.|+.||+.+++
T Consensus 356 ~g~~~l~~~~~~~g-~~~~~l~~~~~~---v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATG-ALLKIFPLEVGS---VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTC-CEEEEECCCSSE---EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCC-CEEEecCCCCce---EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 885 455665444 445555555332 3333346777655532 245789999998877
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=3.3e-14 Score=133.20 Aligned_cols=246 Identities=10% Similarity=0.037 Sum_probs=173.7
Q ss_pred cceEEecccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
...+..+..+.....+++|+|+|+ +++++..++.|..|+...+ ...+..+...+.+++++++|+++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 344456666777889999999998 7788888899999997643 2345567788999999999998887777789
Q ss_pred EEEEECCCCeEEEEeecC----CCcEEEEEEecCCCEEEEE----e-------------CCCcEEEEecCCceEEEeecc
Q 009188 300 VRRWDVSSGNCLHVYEKA----GLGLVSCGWHPDRKWIFSG----A-------------NDKSICMWELGGKELECWKGQ 358 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~----~-------------~dg~i~iwd~~~~~~~~~~~~ 358 (540)
|.+||..+++........ ...+..++++|+|+.+++. + ..+.|..++.. +.......
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR- 169 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-
Confidence 999999888765443322 2245679999999888873 2 13456666665 44433332
Q ss_pred ccceEEEEEEccCCCEEEEEecCCeEEEEECC-CceE-----EEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 359 RTLKISDLEVTSDGKQIITMCKESALLLLDRE-AKVE-----RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 359 ~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~-~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
.......++|+|+++.+++.+.++.|.+|+.. .+.. ........+..++++++|+++++. ++.|.+||..+
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g- 246 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG- 246 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-
Confidence 33467899999999999777778999999986 2211 112234556789999999866665 88999999863
Q ss_pred ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee
Q 009188 433 VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI 481 (540)
Q Consensus 433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 481 (540)
.....+..+.. ... +++.+++++.|++++.+ .+.-++..+.++.
T Consensus 247 -~~~~~~~~~~~-~~~--~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 247 -DELGRVLTPQT-TSN--LCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp -CEEEEEECSSC-CCE--EEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred -CEEEEEECCCC-cee--EEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 45566665544 333 33336888888888876 4556676665543
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=3.9e-14 Score=130.56 Aligned_cols=217 Identities=11% Similarity=0.099 Sum_probs=163.9
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC-CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecC-CC
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ-KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA-GL 319 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 319 (540)
.+++|++++.|+.|.+||..++ +....+..+. ..+.++.++|+|++++ +.++.|..||. +|+.+..+..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 4678999999999999998666 5667777665 5789999999999888 35778999998 89999999875 35
Q ss_pred cEEEEEEecCCCEEEEEeC-CCcEEEEecCCceEEEeec-----cccceEEEEEEccCCCEEEEEecCCeEEEEECCCce
Q 009188 320 GLVSCGWHPDRKWIFSGAN-DKSICMWELGGKELECWKG-----QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV 393 (540)
Q Consensus 320 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~ 393 (540)
.+.++.+.++|+.+++.+. ++.|..+|..++.+..+.. .+......+++.++|+++++...++.|..||...+.
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~ 157 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQL 157 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCE
Confidence 7889999999999999887 7788888876655444331 111245566789999999999999999999999655
Q ss_pred EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC---CeeEEEeeeccCCCcEEEEee
Q 009188 394 ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR---SRFVIRSCFGGLEQAFIASGS 465 (540)
Q Consensus 394 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~s 465 (540)
.........+.++...++++.++++..++.|..+|..++ +.+..+..... ....+......++|+++++..
T Consensus 158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 555555567778889999999999988889999998866 66666653321 111222333356777776653
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=2.6e-15 Score=158.13 Aligned_cols=241 Identities=12% Similarity=0.073 Sum_probs=163.7
Q ss_pred cCcCcEEEEEEecCCCeEEE-----EeCCCcEEEEEeecCCceEEEEEecCCCCCe--EEEEECcCCCeEEEeeCCCc--
Q 009188 229 GHTDEVWFLQFSHNGKYLAS-----SSNDRSAIIWEVDLNGGVTLKHKLSGHQKPV--SCVSWSSDDQQLLTCGVEEA-- 299 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~t-----g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~~~dg~-- 299 (540)
+|...+..++|||||++||. |+.+..|++||+.++.... ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVIEGGKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----CcccCcccccceEEecCCCEEEEEEecCCCC
Confidence 56668999999999999984 4445689999998663210 1122222 67899999999999988776
Q ss_pred -----------EEEEECCCCe----EEEEeecCCCcEEEEEEecCCCEEEEEeCCC----cEEEEecCCceEEEeecccc
Q 009188 300 -----------VRRWDVSSGN----CLHVYEKAGLGLVSCGWHPDRKWIFSGANDK----SICMWELGGKELECWKGQRT 360 (540)
Q Consensus 300 -----------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~ 360 (540)
|++|++.++. .+.....+...+..+.|+|||++|+.++.++ .|.+|+..++....+.....
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 272 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG 272 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC
Confidence 9999998876 3333334456788999999999998887666 67788776555555444333
Q ss_pred ceEEEEEEccCCCEEEEEec----CCeEEEEECCCce----EEEeec--CCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 361 LKISDLEVTSDGKQIITMCK----ESALLLLDREAKV----ERYIEE--DQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 361 ~~v~~i~~~~~~~~l~~~~~----d~~i~~~d~~~~~----~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
.+....+ ++|. ++..+. ++.|.+||..+.. .....+ ...+..++++ ++.++++...++..++|.+.
T Consensus 273 -~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 273 -AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp -CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred -ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 3344444 6666 554443 5889999987653 344433 4467888888 67788888889988888765
Q ss_pred CCceeeeEeeCCcCCeeEEEeeeccCCCcEEE----EeeCCCcEEEEECCCCce
Q 009188 431 GEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA----SGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~----s~s~dg~i~iwd~~~~~~ 480 (540)
........+..+... .+....+++++..++ +....++|++||+.+++.
T Consensus 349 ~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVG--AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTCCEEEECCCSSSS--EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCCeeEEecCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 322334444433111 233344467887666 333457899999988774
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.68 E-value=7.4e-13 Score=124.00 Aligned_cols=278 Identities=10% Similarity=0.065 Sum_probs=192.1
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG 308 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 308 (540)
.....+.++++.++|++.++...++.|.+||.. + .... ..+..+...+.++++.+++.+.++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 445688999999999987777778899999876 3 2222 2333445679999999999888877668889999987 6
Q ss_pred eEEEE-eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee-ccccceEEEEEEccCCCEEEEEecCCeEEE
Q 009188 309 NCLHV-YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK-GQRTLKISDLEVTSDGKQIITMCKESALLL 386 (540)
Q Consensus 309 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~ 386 (540)
+.... .......+.++++.++++.+++...++.|..+|.. +...... ......+..++++++|+.+++...++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 55322 22234678999999999877777768899999987 4443332 223457899999999996666666889999
Q ss_pred EECCCceEEEe--ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe
Q 009188 387 LDREAKVERYI--EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG 464 (540)
Q Consensus 387 ~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 464 (540)
+|......... .....+..++++++++++++....+.|..||.... .............. .+..+++|++.++.
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~---~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISEYDIPTPNARPH---AITAGKNSEIWFTE 247 (300)
T ss_dssp ECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEE---EEEECSTTCEEEEE
T ss_pred ECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-EEEEECCCCCCCce---EEEECCCCCEEEec
Confidence 99854433322 23456889999999987777767788999998432 22111222222222 23337788877776
Q ss_pred eCCCcEEEEECCCCcee-EeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 465 SEDSQVYIWHRASCDLI-GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 465 s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
..++.|..||. +++.. ..+......+.++++.++|. ++++.. . .|..++.+
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGS-VWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSC-EEEECS-S-EEEEEEEC
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCC-EEEEcc-C-ceEEeCCC
Confidence 67789999998 45443 22333456789999999885 666554 4 67666653
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.68 E-value=2.3e-14 Score=151.97 Aligned_cols=276 Identities=14% Similarity=0.096 Sum_probs=180.5
Q ss_pred cCCCeEEEEeCCCc---EEEEEeecC----CceEEEEE----ecCCCCCeEEEEECcCCCeEEEeeCC-----CcEEEEE
Q 009188 241 HNGKYLASSSNDRS---AIIWEVDLN----GGVTLKHK----LSGHQKPVSCVSWSSDDQQLLTCGVE-----EAVRRWD 304 (540)
Q Consensus 241 p~g~~l~tg~~dg~---i~iwd~~~~----~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd 304 (540)
|+|++++....++. -.+|..+.. +..+.+.. -.+|...+..++|||||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78888887655443 677776642 22222211 12233468899999999999887654 3599999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCc--------------EEEEecCCceE---EEee-ccccceEEEE
Q 009188 305 VSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKS--------------ICMWELGGKEL---ECWK-GQRTLKISDL 366 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~~---~~~~-~~~~~~v~~i 366 (540)
+.+|+.+... .+...+..++|+|| +.|+.++.++. |++|++.+... .... ..+...+..+
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999876532 22222357899999 99988877654 89999866431 2222 2222358899
Q ss_pred EEccCCCEEEEEecCC-----eEEEEECCCc----eEEEeecCCceeEEEEcCCCCEEEEEecC----CeEEEEEecCC-
Q 009188 367 EVTSDGKQIITMCKES-----ALLLLDREAK----VERYIEEDQTITSFSLSRDNKFLLVNLLN----QEIHLWNIEGE- 432 (540)
Q Consensus 367 ~~~~~~~~l~~~~~d~-----~i~~~d~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~- 432 (540)
.|+|||++++..+.++ .|++||..++ ......+....... ++|+|+.|+..+.+ +.|.+||+.+.
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999998877544 8999998765 23333444444444 35889888887753 45999998764
Q ss_pred ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECC-CCceeEeecC-CCCCeEEEEeCCCCCCEEEEEeC-
Q 009188 433 VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA-SCDLIGALPG-HSGAVNCVSWNPANPHMLASASD- 509 (540)
Q Consensus 433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~- 509 (540)
......+..+... +....+. ++.++++...|+..++|.+. ++.....+.. +.+.|..++++|+++.++++.+.
T Consensus 353 ~~~~~l~~~~~~~---l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 353 PRFDTVVPESKDN---LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp CEEEEEECCCSSE---EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred cccEEEecCCCCe---EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 1333333333332 2222223 56788889999987777554 4666666664 36778999999998755555443
Q ss_pred --CCcEEEecCCCCCc
Q 009188 510 --DRTIRIWGLKDLNV 523 (540)
Q Consensus 510 --Dg~i~iw~~~~~~~ 523 (540)
.++|+.||+.+++.
T Consensus 429 ~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 429 TQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCcE
Confidence 47899999988764
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=5.1e-14 Score=129.82 Aligned_cols=231 Identities=11% Similarity=0.076 Sum_probs=172.7
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeEEEEeecCC-CcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEE
Q 009188 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAG-LGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISD 365 (540)
Q Consensus 287 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 365 (540)
.+++|++++.++.|.+||.++|+.+..+..+. ..+.++.++|+|+.++ +.++.|..||..+..+-.+.......+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 46789999999999999999999999998775 4788999999999888 45778999999555444444433357889
Q ss_pred EEEccCCCEEEEEec-CCeEEEEECCCceEEEee-------cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeee
Q 009188 366 LEVTSDGKQIITMCK-ESALLLLDREAKVERYIE-------EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVA 437 (540)
Q Consensus 366 i~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 437 (540)
+.+.++|+.+++.+. ++.+..+|...+...... +......+++.++|+++++...++.|..||.. + +.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-QLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-CEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-CEEE
Confidence 999999999999887 888888888666533322 11245567889999999999999999999987 4 6667
Q ss_pred EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC------CCeEEEEeCCCCCCEEEEEe--C
Q 009188 438 KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS------GAVNCVSWNPANPHMLASAS--D 509 (540)
Q Consensus 438 ~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~~--~ 509 (540)
++...... +.. ...++|+++++++.++.|..+|..+|+.+.++..+. ..+..++..++|. ++++.. .
T Consensus 160 ~~~~~~~~-~~~---~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~~~g~ 234 (276)
T 3no2_A 160 SVKLSGTP-FSS---AFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG-LYICNWQGH 234 (276)
T ss_dssp EEECSSCC-CEE---EECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC-EEEEEECTT
T ss_pred EEECCCCc-cce---eEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC-EEEEeccCc
Confidence 77654332 222 226789999999999999999999999998886432 2378888999885 666653 1
Q ss_pred C------CcEEEecC-CCCCcccc
Q 009188 510 D------RTIRIWGL-KDLNVKRK 526 (540)
Q Consensus 510 D------g~i~iw~~-~~~~~~~~ 526 (540)
. +..+++.+ .++++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 235 DREAGKGKHPQLVEIDSEGKVVWQ 258 (276)
T ss_dssp CTTGGGSCCCSEEEECTTSBEEEE
T ss_pred cccccccCCceEEEECCCCCEEEE
Confidence 1 13345555 45555543
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.66 E-value=6e-13 Score=128.13 Aligned_cols=275 Identities=9% Similarity=-0.019 Sum_probs=184.5
Q ss_pred ecCCCeEEEEeC--CC---cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee----------CCCcEEEEE
Q 009188 240 SHNGKYLASSSN--DR---SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG----------VEEAVRRWD 304 (540)
Q Consensus 240 sp~g~~l~tg~~--dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd 304 (540)
.|+++++++... .+ +|.++|..+. +....+.....+ .++++|||++++.+. .++.|.+||
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 467776666543 22 7899998765 444555544444 899999999999886 367899999
Q ss_pred CCCCeEEEEeecC-------CCcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEe-eccccceEEEEEEccCC-C
Q 009188 305 VSSGNCLHVYEKA-------GLGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECW-KGQRTLKISDLEVTSDG-K 373 (540)
Q Consensus 305 ~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~ 373 (540)
..+++.+..+... ......+.|+|||++|+++.. ++.|.++| .+++.... ..... ++.+.|++ +
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~ 178 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPS 178 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCc
Confidence 9998888776543 123457899999999998874 47899999 88877654 33221 24445555 4
Q ss_pred EEEEEecCCeEEEEECCCceEE-Ee------ecCCc-eeEEEEcCCCCEEEEEecCCeEEEEEecCCc-eeeeEeeCCcC
Q 009188 374 QIITMCKESALLLLDREAKVER-YI------EEDQT-ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV-KLVAKYKGHKR 444 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~~~-~~------~~~~~-i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~ 444 (540)
.+++.+.||.+.++|. +.... .. ....+ .....+.+++..++..+..+.+.+.|+.+.. .....+.....
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~ 257 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG 257 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence 5667778999999999 54422 11 11111 1234566666555555578899999986542 22222221110
Q ss_pred -------CeeEEEeeeccCCCcEEEEeeC----------CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 445 -------SRFVIRSCFGGLEQAFIASGSE----------DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 445 -------~~~~i~~~~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
.........++++++.++.+.. ++.|.++|..+++.+.++. -.....+++|+|+++.+++++
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEE
Confidence 0000111233778887776543 3579999999999998886 344689999999996466666
Q ss_pred e-CCCcEEEecCCCCCcccc
Q 009188 508 S-DDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 508 ~-~Dg~i~iw~~~~~~~~~~ 526 (540)
. .++.|.+||+.+++....
T Consensus 337 ~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 337 SAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCCEEee
Confidence 6 589999999999998866
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=2.6e-13 Score=129.37 Aligned_cols=239 Identities=9% Similarity=0.047 Sum_probs=165.7
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE--- 297 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--- 297 (540)
......+.++...+.+++|+|+|++++++..++.|.+||...+. .......+...+.+++|+++|+++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc---EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence 44566677788888999999999988888888999999886542 222223566789999999999988877666
Q ss_pred -CcEEEEECCCCeEEEEee--cCCCcEEEEEEecCCCEEEEEeC------CCcEEEEecCCceEEEeeccccceEEEEEE
Q 009188 298 -EAVRRWDVSSGNCLHVYE--KAGLGLVSCGWHPDRKWIFSGAN------DKSICMWELGGKELECWKGQRTLKISDLEV 368 (540)
Q Consensus 298 -g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 368 (540)
+.|.+||..++.....+. .....+.+++++|+|+.+++... .+.|..+|..++........ ...+..+++
T Consensus 111 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~ 189 (333)
T 2dg1_A 111 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIAL 189 (333)
T ss_dssp CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEEE
T ss_pred CceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CCcccceEE
Confidence 689999998877654433 23457899999999987776653 35677777665554443322 235788999
Q ss_pred ccCCCEEEEE-ecCCeEEEEECCC--ceEE------Eee--cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeee
Q 009188 369 TSDGKQIITM-CKESALLLLDREA--KVER------YIE--EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVA 437 (540)
Q Consensus 369 ~~~~~~l~~~-~~d~~i~~~d~~~--~~~~------~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 437 (540)
+|+++.++++ +.++.|.+||..+ .... ... ....+..++++++|+++++...++.|.+||... ..+.
T Consensus 190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g--~~~~ 267 (333)
T 2dg1_A 190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG--YPIG 267 (333)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS--CEEE
T ss_pred CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC--CEEE
Confidence 9999866554 4678999999853 2111 111 124678899999999888887789999999853 4445
Q ss_pred EeeCCcC------CeeEEEeeeccCCCcEEEEeeCCC
Q 009188 438 KYKGHKR------SRFVIRSCFGGLEQAFIASGSEDS 468 (540)
Q Consensus 438 ~~~~~~~------~~~~i~~~~~~~~~~~l~s~s~dg 468 (540)
.+..... .... +++ ++++..|+.++.++
T Consensus 268 ~~~~~~~~~g~~~~~~~--~~~-~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 268 QILIPGRDEGHMLRSTH--PQF-IPGTNQLIICSNDI 301 (333)
T ss_dssp EEECTTGGGTCSCBCCE--EEE-CTTSCEEEEEEECG
T ss_pred EEEcCCCccccccCcce--EEE-CCCCCEEEEEeCcc
Confidence 5543321 2222 233 67876666655553
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.66 E-value=1.6e-13 Score=130.29 Aligned_cols=285 Identities=11% Similarity=0.060 Sum_probs=191.8
Q ss_pred EecCCCeEEEEeC-----CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee----------CCCcEEEE
Q 009188 239 FSHNGKYLASSSN-----DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG----------VEEAVRRW 303 (540)
Q Consensus 239 ~sp~g~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iw 303 (540)
..|+++.++.... ++.|.+.|..+. +....+.....+ . ++++|||+++++++ .++.|.+|
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3578888877765 578999998765 455555544455 4 99999999988775 35789999
Q ss_pred ECCCCeEEEEeecCC-------CcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEeeccccceEEEEEEccCCCE
Q 009188 304 DVSSGNCLHVYEKAG-------LGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 304 d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 374 (540)
|..+++.+..+.... .....+.++|||++++++.. ++.|.++|+.+++......... . ...+....+.
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~ 191 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDT 191 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCce
Confidence 999999988875432 24557899999999998864 6899999999887765543322 1 2223344567
Q ss_pred EEEEecCCeEEEEECCC-ceE-EEe-ec----CCce-eEEEEc-CCCCEEEEEecCCeEEEEEecCCc-eeeeEee----
Q 009188 375 IITMCKESALLLLDREA-KVE-RYI-EE----DQTI-TSFSLS-RDNKFLLVNLLNQEIHLWNIEGEV-KLVAKYK---- 440 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~-~~~-~~~-~~----~~~i-~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~---- 440 (540)
+++.+.||.+.+.+... ... ... .. ..++ ....|. ++|++++ .+.+|.+++.|+.+.. .....+.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 77888888888888765 331 111 11 1122 124554 5776555 5558999999997652 2333332
Q ss_pred -----CC-cCCeeEEEeeeccCCCcEEEEeeC----------CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEE
Q 009188 441 -----GH-KRSRFVIRSCFGGLEQAFIASGSE----------DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHML 504 (540)
Q Consensus 441 -----~~-~~~~~~i~~~~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 504 (540)
+. ......+.. +++++.++.... .+.|.+.|..+++.+..+.- ...++++++++++..+|
T Consensus 271 ~~~~~g~~p~g~q~~a~---~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~l 346 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAY---HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLL 346 (386)
T ss_dssp HHHHTTEEECSSSCEEE---ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEE
T ss_pred ccccccccCCCcceeeE---CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEE
Confidence 00 001111211 566776666532 25799999999999988873 34788999999985344
Q ss_pred E-EEeCCCcEEEecCCCCCcccc---ccCCCceEec
Q 009188 505 A-SASDDRTIRIWGLKDLNVKRK---DCHSNGVHYC 536 (540)
Q Consensus 505 ~-s~~~Dg~i~iw~~~~~~~~~~---~~~~~~v~~c 536 (540)
+ +...++.|.++|..+++..+. ..+++.+.+.
T Consensus 347 y~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s 382 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT 382 (386)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEEC
Confidence 4 456699999999999998775 5566666554
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=2.3e-14 Score=132.22 Aligned_cols=239 Identities=6% Similarity=-0.057 Sum_probs=166.2
Q ss_pred cEEEEEEecCCCeEE-EEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 233 EVWFLQFSHNGKYLA-SSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
...+++++|+|++++ +.+.++.|.+|+.... ........+...+.+++++++|+++++.. ++.|.+||...+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST---GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc---ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 778999999999776 4467789999986532 11111123345688899999998666655 889999998765433
Q ss_pred EEee-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECC
Q 009188 312 HVYE-KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDRE 390 (540)
Q Consensus 312 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~ 390 (540)
.+. .....+.+++++++|+.+++...++.|.+|+..+.............+..++++++|+.+++...++.|.+||..
T Consensus 101 -~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 -VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp -ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred -eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 332 233578999999999877777778899999876544333222223357889999999977777778899999988
Q ss_pred CceEEEe--ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC
Q 009188 391 AKVERYI--EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS 468 (540)
Q Consensus 391 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg 468 (540)
+...... .....+.+++++++|.++++...++.|.+||..+.... .....+.... ..+..+++|+++++...++
T Consensus 180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~p---~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTP---LAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCCCSCSCE---EEEEECTTCCEEEEEGGGT
T ss_pred CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eeccCCCCCc---eeEEECCCCCEEEEECCCC
Confidence 7653332 22367889999999977777777889999998765222 1111111222 2233378899888889999
Q ss_pred cEEEEECCCCce
Q 009188 469 QVYIWHRASCDL 480 (540)
Q Consensus 469 ~i~iwd~~~~~~ 480 (540)
.|++++....+.
T Consensus 256 ~v~~~~~~~~~~ 267 (270)
T 1rwi_B 256 RVVKLTSLEHHH 267 (270)
T ss_dssp EEEEECCCGGGS
T ss_pred EEEEEcCCCccc
Confidence 999999876554
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=2.4e-13 Score=128.34 Aligned_cols=244 Identities=9% Similarity=0.108 Sum_probs=172.1
Q ss_pred cCCCCCeEEEEECcCCCeEEE-------eeCCCcEEEEECCCCeEEEEee----cCCCcEEEEEEecC-CCEEEEEeCCC
Q 009188 273 SGHQKPVSCVSWSSDDQQLLT-------CGVEEAVRRWDVSSGNCLHVYE----KAGLGLVSCGWHPD-RKWIFSGANDK 340 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg 340 (540)
...-....+++|++++.++++ ...++.|.+||..+++...... .+...+.+++++++ ++ +++++..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCC
Confidence 334456789999999988887 6778899999988887643322 13456889999999 65 44444455
Q ss_pred cEEEEecCCceEEEe-ec----cccceEEEEEEccCCCEEEEEecC---------------CeEEEEECCCceEEEeecC
Q 009188 341 SICMWELGGKELECW-KG----QRTLKISDLEVTSDGKQIITMCKE---------------SALLLLDREAKVERYIEED 400 (540)
Q Consensus 341 ~i~iwd~~~~~~~~~-~~----~~~~~v~~i~~~~~~~~l~~~~~d---------------~~i~~~d~~~~~~~~~~~~ 400 (540)
.|.+||.. ++.... .. .....+.+++++++|+.+++...+ +.|..++............
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 171 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAF 171 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCC
Confidence 79999988 555444 22 112357899999999888776655 5788888764334444444
Q ss_pred CceeEEEEc----CCCCEEEEE-ecCCeEEEEEecCCce-----eeeEeeCCc-CCeeEEEeeeccCCCcEEEEeeCCCc
Q 009188 401 QTITSFSLS----RDNKFLLVN-LLNQEIHLWNIEGEVK-----LVAKYKGHK-RSRFVIRSCFGGLEQAFIASGSEDSQ 469 (540)
Q Consensus 401 ~~i~~~~~s----~~~~~l~~~-~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~s~dg~ 469 (540)
.....++++ |+++.++++ ..++.|.+||...... ....+..+. .. ...+..+++|+++++...++.
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---ADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---EEEEEEBTTCCEEEEEETTTE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---CCceEECCCCCEEEEEcCCCE
Confidence 567889999 999766555 4678999999862112 122222221 11 222334788998888888899
Q ss_pred EEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 470 VYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 470 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
|.+||..+++.+..+..+...+.+++++|++..++++...++.|..|++...
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999998888877777777889999999998546666667789999998753
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=7.2e-12 Score=117.16 Aligned_cols=241 Identities=9% Similarity=0.047 Sum_probs=172.0
Q ss_pred ecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEe-ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCc
Q 009188 272 LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVY-EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGK 350 (540)
Q Consensus 272 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 350 (540)
+..+...+.+++++++|+..++...++.|.+||.. ++..... ......+.++++++++..+++...++.|..||..+.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence 34456789999999999988876668899999987 6543322 234567899999999987777777889999998643
Q ss_pred eEEEee-ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe--ecCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009188 351 ELECWK-GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI--EEDQTITSFSLSRDNKFLLVNLLNQEIHLW 427 (540)
Q Consensus 351 ~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 427 (540)
...+. ......+..++++++|..+++...++.|..||......... .....+..++++++++.+++...++.|..|
T Consensus 89 -~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 89 -IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI 167 (299)
T ss_dssp -EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred -EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence 33332 22344789999999998888777789999999844333222 234568999999999888877778899999
Q ss_pred EecCCceeeeE-eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEe-ecCCCCCeEEEEeCCCCCCEEE
Q 009188 428 NIEGEVKLVAK-YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGA-LPGHSGAVNCVSWNPANPHMLA 505 (540)
Q Consensus 428 d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~ 505 (540)
|. ++ ..... ........ ......+++.+.++...++.|.+||. +++.... +..+...+.++++++++. +++
T Consensus 168 ~~-~g-~~~~~~~~~~~~~~---~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v 240 (299)
T 2z2n_A 168 TE-SG-DITEFKIPTPASGP---VGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGID-LWF 240 (299)
T ss_dssp CT-TC-CEEEEECSSTTCCE---EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEE
T ss_pred cC-CC-cEEEeeCCCCCCcc---eeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC-EEE
Confidence 98 43 22221 22222222 22333678887777777889999998 6664432 334557899999999985 777
Q ss_pred EEeCCCcEEEecCCCCC
Q 009188 506 SASDDRTIRIWGLKDLN 522 (540)
Q Consensus 506 s~~~Dg~i~iw~~~~~~ 522 (540)
+...++.|..||. +++
T Consensus 241 ~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 241 TEWGANKIGRLTS-NNI 256 (299)
T ss_dssp EETTTTEEEEEET-TTE
T ss_pred eccCCceEEEECC-CCc
Confidence 7667889999998 444
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.60 E-value=3.3e-12 Score=119.45 Aligned_cols=230 Identities=11% Similarity=0.142 Sum_probs=158.6
Q ss_pred CCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceE
Q 009188 274 GHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL 352 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 352 (540)
.+..-.-+..|++++ .++++...++.|..||..+++. ..+ .....+.+++++++|++++ +. ++.|.+||..++..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcE
Confidence 344456688999965 4555556788999999988765 333 3456789999999999554 44 56799999987766
Q ss_pred EEeecc----ccceEEEEEEccCCCEEEEEec-----------CCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEE
Q 009188 353 ECWKGQ----RTLKISDLEVTSDGKQIITMCK-----------ESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 353 ~~~~~~----~~~~v~~i~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 417 (540)
..+... ....+.+++++|+|+.+++... .+.|..++...............+.++|+|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 544322 2346899999999997665432 2456666665444444445556789999999987755
Q ss_pred -EecCCeEEEEEec--CCc----eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCC
Q 009188 418 -NLLNQEIHLWNIE--GEV----KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGA 490 (540)
Q Consensus 418 -~~~dg~i~i~d~~--~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 490 (540)
.+.++.|..|++. ++. .....+...... ...+...++|++.++...++.|..||..+++.+..+..+...
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~---p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI---PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE---EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC---CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 4557899999984 321 111122211121 222333788988888878889999999999999998877788
Q ss_pred eEEEEeC-CCCCCEEEEEeCC
Q 009188 491 VNCVSWN-PANPHMLASASDD 510 (540)
Q Consensus 491 v~~l~~~-~~~~~~l~s~~~D 510 (540)
+++++|. |++..++++...+
T Consensus 243 ~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEEEESGGGCEEEEEEBCT
T ss_pred ceEEEEeCCCCCEEEEEcCCc
Confidence 9999998 7876566666543
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=1e-12 Score=124.78 Aligned_cols=250 Identities=10% Similarity=0.017 Sum_probs=169.4
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
.....+++. +++..++...++.|.+||..+. +...++. .......+++++++...++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~---~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF---KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC---CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECccc---EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 446777774 4455555666789999999766 3444443 3467899999999855555448899999999999988
Q ss_pred EEeecCC-----CcEEEEEEecCCCEEEEEe--CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC---
Q 009188 312 HVYEKAG-----LGLVSCGWHPDRKWIFSGA--NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE--- 381 (540)
Q Consensus 312 ~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--- 381 (540)
..+.... .....+++ ++..++++. .++.|.++|..+++........ .....++++++|+.++++..+
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccC
Confidence 7776433 14456777 344555555 4889999999887765544332 245788999999877766554
Q ss_pred -------CeEEEEECCCceEE-Eeec--CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe-eCCcCCeeEEE
Q 009188 382 -------SALLLLDREAKVER-YIEE--DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY-KGHKRSRFVIR 450 (540)
Q Consensus 382 -------~~i~~~d~~~~~~~-~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~ 450 (540)
+.|.++|..+.... .... ......++++|+++.++++.. .|.+||..+.......+ .........+
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi- 272 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGL- 272 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEE-
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEE-
Confidence 78999999876632 3222 346899999999999888765 89999987652211111 1111222222
Q ss_pred eeeccC-CCcEEEEe----eCCCcEEEEECCCCceeEeecCCCCCeEEEEe
Q 009188 451 SCFGGL-EQAFIASG----SEDSQVYIWHRASCDLIGALPGHSGAVNCVSW 496 (540)
Q Consensus 451 ~~~~~~-~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 496 (540)
..+| ++.++++. ..++.|.+||.. ++.+.++.. ......++|
T Consensus 273 --~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 273 --TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp --EECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred --EEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 2366 66666666 678999999998 888888763 233455555
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=2.3e-12 Score=124.64 Aligned_cols=274 Identities=12% Similarity=0.060 Sum_probs=184.0
Q ss_pred cCCCeEEEEeCC-----CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee----------CCCcEEEEEC
Q 009188 241 HNGKYLASSSND-----RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG----------VEEAVRRWDV 305 (540)
Q Consensus 241 p~g~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~ 305 (540)
|+++.+++.... +.|.++|..+. +....+..-..+ .+.++||+++++++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 355655554432 68999998766 555555544455 899999999988876 3678999999
Q ss_pred CCCeEEEEeecC-------CCcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEeeccccceEEEEEEccCC-CEE
Q 009188 306 SSGNCLHVYEKA-------GLGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECWKGQRTLKISDLEVTSDG-KQI 375 (540)
Q Consensus 306 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l 375 (540)
.+++.+..+... ......+.++|||++++++.. ++.|.+.|+.+.+......... . ....|++ ..+
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~---~~~~p~g~~~~ 232 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-C---YHIFPASPTVF 232 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E---EEEEEEETTEE
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-c---eeeccCCCcEE
Confidence 999998887542 223457899999999999874 5789999999877765443321 1 2233333 556
Q ss_pred EEEecCCeEEEEECCCceEEE-----ee-cCCc-eeEEEEcCCCCEEEEEecCCeEEEEEecCCce-eeeEeeCC-----
Q 009188 376 ITMCKESALLLLDREAKVERY-----IE-EDQT-ITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK-LVAKYKGH----- 442 (540)
Q Consensus 376 ~~~~~d~~i~~~d~~~~~~~~-----~~-~~~~-i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~----- 442 (540)
++.+.||.+.+.+..+..... +. ...+ ...+.+.+++..++.....+.+.+.|..+... ....+...
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 667778887777774443211 11 1111 12456789988888878889999999865421 11221110
Q ss_pred -----cCCeeEEEeeeccCCCcEEEEeeC----------CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 443 -----KRSRFVIRSCFGGLEQAFIASGSE----------DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 443 -----~~~~~~i~~~~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
......+ .++++++.++.... ++.|.++|..+.+.+.++.. .....+++|+|+++.++++.
T Consensus 313 ~~g~~p~g~~~v---a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 313 ADDWRPGGWQQT---AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp GGTEEECSSSCE---EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEE
T ss_pred ccccccCCceee---EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEE
Confidence 0000012 22677776665532 35799999999999998873 23588999999996355555
Q ss_pred e-CCCcEEEecCCCCCccccc
Q 009188 508 S-DDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 508 ~-~Dg~i~iw~~~~~~~~~~~ 527 (540)
. .++.|.++|+.+++..+..
T Consensus 389 n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCCEEEEe
Confidence 5 6999999999999988663
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=7.8e-13 Score=140.19 Aligned_cols=242 Identities=13% Similarity=0.127 Sum_probs=156.6
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCC-----CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc----
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSND-----RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA---- 299 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~---- 299 (540)
+|...+..++|||||++||.++.+ ..|++||+.++..... .. +...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCccccc
Confidence 344578899999999999987654 3599999986643211 11 1112356899999 99988876654
Q ss_pred ----------EEEEECCCCeE--EEEeec--CCCcEEEEEEecCCCEEEEEeCCC-----cEEEEecCCc--e-EEEeec
Q 009188 300 ----------VRRWDVSSGNC--LHVYEK--AGLGLVSCGWHPDRKWIFSGANDK-----SICMWELGGK--E-LECWKG 357 (540)
Q Consensus 300 ----------i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~-~~~~~~ 357 (540)
|++|++.++.. ...+.. +...+..+.|+|||++|+..+.++ .|++||+.++ . ...+..
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 89999987652 233333 233588999999999988877544 7999999765 4 444444
Q ss_pred cccceEEEEEEccCCCEEEEEec----CCeEEEEECCCc--e-EEEe-ecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 358 QRTLKISDLEVTSDGKQIITMCK----ESALLLLDREAK--V-ERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~~----d~~i~~~d~~~~--~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
.... .... ++++|..++..+. ++.|.+||..+. . .... .+...+..++++ ++.++++...++..++|.+
T Consensus 315 ~~~~-~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 315 DLKA-QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp SSSS-CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CCCc-eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 3332 2333 3488998888775 345999998873 3 3333 334456677777 5667788888998877766
Q ss_pred cCCceeeeEeeCCcCCeeEEEeeeccCCCcEEE----EeeCCCcEEEEECCCCce
Q 009188 430 EGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIA----SGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~----s~s~dg~i~iwd~~~~~~ 480 (540)
.........+..+... .+....+++++..++ +....++|+.||+.+++.
T Consensus 392 ~~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIG--SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ETTSCEEEECBCSSSC--EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eCCCCceeeccCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 5222344444432111 233333467776555 233457899999988763
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=1.7e-10 Score=107.69 Aligned_cols=242 Identities=10% Similarity=0.017 Sum_probs=170.5
Q ss_pred cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEE-eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV-YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE 351 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 351 (540)
......+.++++.++|+..++...++.|.+||.. ++.... +......+.+++++++++.+++...++.|..||.. +.
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3445678999999999988877778999999987 654432 22233578999999999877776667889999988 44
Q ss_pred EEEeec-cccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe--ecCCceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 352 LECWKG-QRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI--EEDQTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 352 ~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
...+.. .....+..++++++|..+++...++.|..+|......... .....+..++++++++++++...++.|..||
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 443332 2335789999999999888777788999999884443222 2346788999999999776666678899999
Q ss_pred ecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEe-ecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 429 IEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGA-LPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
.... .............. .....+++.+.++....+.|.+||. +++.... +..+...+.++++++++. ++++.
T Consensus 174 ~~g~-~~~~~~~~~~~~~~---~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~ 247 (300)
T 2qc5_A 174 NTGK-LEEYPLPTNAAAPV---GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTE 247 (300)
T ss_dssp TTCC-EEEEECSSTTCCEE---EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEE
T ss_pred CCCc-EEEeeCCCCCCCcc---eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEec
Confidence 8432 22111112222222 2233678887777777788999998 5554432 344567789999999985 77777
Q ss_pred eCCCcEEEecCCCCCc
Q 009188 508 SDDRTIRIWGLKDLNV 523 (540)
Q Consensus 508 ~~Dg~i~iw~~~~~~~ 523 (540)
..++.|..|+. +++.
T Consensus 248 ~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 248 WGANQIGRITN-DNTI 262 (300)
T ss_dssp TTTTEEEEECT-TSCE
T ss_pred cCCCeEEEECC-CCcE
Confidence 67789999998 4543
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=1.3e-11 Score=120.62 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=158.4
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC--cEEEEECCCCe
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE--AVRRWDVSSGN 309 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~ 309 (540)
.....++|+|+|+++++...++.|++||.+.+ ........ ..... ++|+++++.|+++..++ .|.+|+..++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 46889999999997777777899999998744 22222333 22233 99999999998888766 79999987665
Q ss_pred EEEEe----ecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe----eccccceE--EEEEEccC-CCEEEEE
Q 009188 310 CLHVY----EKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW----KGQRTLKI--SDLEVTSD-GKQIITM 378 (540)
Q Consensus 310 ~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~i~~~~~-~~~l~~~ 378 (540)
....+ ......+.+++++|++..|+++..++.|+.||..++..... ........ ..++++|+ +..+++-
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 44443 22445678899999655666677888999999987654443 21111111 28999995 5555565
Q ss_pred ecCCeEEEEECCCceEEEeecC---------------CceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeCC
Q 009188 379 CKESALLLLDREAKVERYIEED---------------QTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 379 ~~d~~i~~~d~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
..++.|+.|+............ .....++++|+|+++++-. .++.|+.|++.++ . +..+.++
T Consensus 286 ~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~-v~~~~g~ 363 (409)
T 3hrp_A 286 QNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-Y-VSTVAGQ 363 (409)
T ss_dssp TTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-E-EEEEEEC
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-E-EEEEeCC
Confidence 6788999999887654443332 3478999999999777777 7899999997654 3 3333332
Q ss_pred cC-------------CeeEEEeeeccCCCcEEEEeeCCCcEEEEEC
Q 009188 443 KR-------------SRFVIRSCFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 443 ~~-------------~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
.. -.... .+..++++.++++-..++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~-giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPY-DICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEE-EEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCce-EEEEcCCCCEEEEECCCCeEEEEEe
Confidence 10 00111 1222566777777667777776654
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=3.7e-12 Score=120.84 Aligned_cols=265 Identities=11% Similarity=0.070 Sum_probs=172.3
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeEEEEe----------CCCcEEEEEeecCCceEEEEEecCC-------CCCeEEE
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYLASSS----------NDRSAIIWEVDLNGGVTLKHKLSGH-------QKPVSCV 282 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l 282 (540)
..+.+..+..-..+ . ++++|||+++++++ .++.|.+||..+.. ....+.-. ......+
T Consensus 68 t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~---v~~~I~v~~g~r~~~g~~P~~~ 142 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL---PTADIELPDAPRFLVGTYPWMT 142 (386)
T ss_dssp TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC---EEEEEEETTCCCCCBSCCGGGE
T ss_pred CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe---EEEEEECCCccccccCCCCceE
Confidence 45556666544455 4 99999999888775 35789999987663 33333211 1245678
Q ss_pred EECcCCCeEEEeeC--CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEEEeecc-
Q 009188 283 SWSSDDQQLLTCGV--EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELECWKGQ- 358 (540)
Q Consensus 283 ~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~- 358 (540)
.|+|||++++++.. ++.|.++|+.+++.+..+..... ...+....+.+++.+.||.+.+.++.. +........
T Consensus 143 a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 143 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 99999999988864 68999999999999998865331 222333456777888899998888864 443221111
Q ss_pred ---ccceE-EEEEEc-cCCCEEEEEecCCeEEEEECCCceEEEee--------------cCCceeEEEEcCCCCEEEEEe
Q 009188 359 ---RTLKI-SDLEVT-SDGKQIITMCKESALLLLDREAKVERYIE--------------EDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 359 ---~~~~v-~~i~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------~~~~i~~~~~s~~~~~l~~~~ 419 (540)
...++ ....|. ++|+.++ .+.+|.+++.|..+....... .......++++++++.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~ 298 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 298 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence 11111 123553 6665444 666899999999765311110 123445688899998888875
Q ss_pred c----------CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc-EEEEe-eCCCcEEEEECCCCceeEeecCC
Q 009188 420 L----------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA-FIASG-SEDSQVYIWHRASCDLIGALPGH 487 (540)
Q Consensus 420 ~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-s~dg~i~iwd~~~~~~~~~~~~h 487 (540)
. .+.|.++|+.+. +.+..+.... ... .+.++++++ +|++. ..++.|.++|..+++.+.++..-
T Consensus 299 ~~~~~~~hk~~~~~V~viD~~t~-kv~~~i~vg~-~~~---~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 299 DQRDEWRHKTASRFVVVLDAKTG-ERLAKFEMGH-EID---SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE-EEC---EEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred ccccccccCCCCCEEEEEECCCC-eEEEEEECCC-Ccc---eEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 3 257999999988 5566554332 112 233388886 66654 45899999999999999888732
Q ss_pred CCCeEEEEeCCC
Q 009188 488 SGAVNCVSWNPA 499 (540)
Q Consensus 488 ~~~v~~l~~~~~ 499 (540)
+.-+.|.+++|
T Consensus 374 -~~p~~l~~s~d 384 (386)
T 3sjl_D 374 -GHGPQVITTAD 384 (386)
T ss_dssp -CSSCCEEEECC
T ss_pred -CCCceeEECCc
Confidence 33344555554
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=1.4e-11 Score=120.30 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=163.1
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC--cEEEEecCCceEEE
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK--SICMWELGGKELEC 354 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~ 354 (540)
.....|+|+++++++++...++.|++||..++.......... ... ++|+++++.|+++..++ .|.+++..+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 468899999999987777778899999998887766554433 333 99999999999988866 78888886543222
Q ss_pred ee----ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe----e--cCCce--eEEEEcCC-CCEEEEEecC
Q 009188 355 WK----GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI----E--EDQTI--TSFSLSRD-NKFLLVNLLN 421 (540)
Q Consensus 355 ~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~--~~~~i--~~~~~s~~-~~~l~~~~~d 421 (540)
.. ......+.+++++|++..|+++..++.|+.||..+...... . ....- ..++|+|+ +.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 22 21334678899999655666677888999999987653333 1 11111 39999995 5555666668
Q ss_pred CeEEEEEecCCceeeeEeeCCc---C----------CeeEEEeeeccCCCcEEEEee-CCCcEEEEECCCCceeEeecCC
Q 009188 422 QEIHLWNIEGEVKLVAKYKGHK---R----------SRFVIRSCFGGLEQAFIASGS-EDSQVYIWHRASCDLIGALPGH 487 (540)
Q Consensus 422 g~i~i~d~~~~~~~~~~~~~~~---~----------~~~~i~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h 487 (540)
+.|+.|+.... ...+.++. . -.... ...++++|+++++-+ .++.|+.||..++.. ..+.++
T Consensus 289 ~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~-gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPN-GMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ 363 (409)
T ss_dssp TEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEE-EEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred CEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCe-EEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence 89999987654 22222221 0 01112 223378899888877 889999999877764 333333
Q ss_pred ---------------CCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 488 ---------------SGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 488 ---------------~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
-.....++++|++ .++++-..++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence 2468999999997 48888888889988765
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=7.3e-11 Score=111.83 Aligned_cols=223 Identities=11% Similarity=0.087 Sum_probs=150.9
Q ss_pred eEEEEECcCC-CeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec
Q 009188 279 VSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG 357 (540)
Q Consensus 279 v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 357 (540)
..+..|+|++ .++++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||..++.......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 4567899975 45556667789999999887653 332 34579999999999876654 44 49999998776654432
Q ss_pred c----ccceEEEEEEccCCCEEEEEec------CCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEE-ecCCeEEE
Q 009188 358 Q----RTLKISDLEVTSDGKQIITMCK------ESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVN-LLNQEIHL 426 (540)
Q Consensus 358 ~----~~~~v~~i~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i 426 (540)
. ....+.+++++++|+.+++... .+.|..++ ................++|+|+++.++++ +.++.|.+
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~ 205 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR 205 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence 2 1246899999999997665542 35677777 43333333344567899999999877655 45689999
Q ss_pred EEec--CC-c----eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeC-C
Q 009188 427 WNIE--GE-V----KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWN-P 498 (540)
Q Consensus 427 ~d~~--~~-~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~ 498 (540)
||+. ++ . .....+..... ........++|++.++...++.|.+||. +++.+..+..+...+++++|+ |
T Consensus 206 ~d~~~~~Gl~~~~~~~~~~~~~~~~---~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 206 VPLDARTGLPTGKAEVFIDSTGIKG---GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSS---EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEcccccCCcccCceEEEECCCCCC---CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9985 32 1 11222221111 1223334778888777767789999998 677777777777789999998 8
Q ss_pred CCCCEEEEEeCC
Q 009188 499 ANPHMLASASDD 510 (540)
Q Consensus 499 ~~~~~l~s~~~D 510 (540)
++..++++...+
T Consensus 282 d~~~L~vt~~~~ 293 (326)
T 2ghs_A 282 DASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEEBCT
T ss_pred CCCEEEEEecCC
Confidence 876455665554
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=2.3e-10 Score=110.06 Aligned_cols=248 Identities=9% Similarity=-0.047 Sum_probs=164.9
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEe----------CCCcEEEEEeecCCceEEEEEecCC-------CCCeEEEE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSS----------NDRSAIIWEVDLNGGVTLKHKLSGH-------QKPVSCVS 283 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~ 283 (540)
.+.+..+.....+ .+++||||++++++. .++.|.+||..+.. ....+.-. ......+.
T Consensus 57 ~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~---~~~~i~~~~~~~~~~g~~p~~~~ 131 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDVGPYSWMNA 131 (373)
T ss_pred CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc---EEEEEECCCccccccCCCccceE
Confidence 3445555544444 999999999999886 36789999987542 22222211 13356899
Q ss_pred ECcCCCeEEEeeC--CCcEEEEECCCCeEEEE-eecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceEEEeec--
Q 009188 284 WSSDDQQLLTCGV--EEAVRRWDVSSGNCLHV-YEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKELECWKG-- 357 (540)
Q Consensus 284 ~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 357 (540)
|+|||++|+++.. ++.|.++| .+++.+.. +.... ++.+.|++ ..+++.+.||.+.++|. ++.......
T Consensus 132 ~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~ 205 (373)
T 2mad_H 132 NTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG 205 (373)
T ss_pred ECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc
Confidence 9999999998874 47899999 99998877 64332 24455554 45667778999999999 654442111
Q ss_pred ---cccce-EEEEEEccCCCEEEEEecCCeEEEEECCCceEE---Eee-----------cCCceeEEEEcCCCCEEEEEe
Q 009188 358 ---QRTLK-ISDLEVTSDGKQIITMCKESALLLLDREAKVER---YIE-----------EDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 358 ---~~~~~-v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~-----------~~~~i~~~~~s~~~~~l~~~~ 419 (540)
....+ .....+.+++..++..+..+.+.+.|..+.... ... .......+.++|+++.++++.
T Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 206 AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred ccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEe
Confidence 11111 223456677666666667889999998654311 111 112234478999998888765
Q ss_pred c----------CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc-EEEEee-CCCcEEEEECCCCceeEee
Q 009188 420 L----------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA-FIASGS-EDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 420 ~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 484 (540)
. .+.|.++|..+. +.+..+..... ...+ .++++|+ +++++. .++.|.+||..+++.+..+
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g~~-p~~i---~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLGHD-VDAI---SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCC-EEEEEEECCCC-cCeE---EECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 3 357999999887 66666654332 2222 3388998 777777 5899999999999998874
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=6.7e-12 Score=119.65 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=135.8
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCC--------ceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG--------GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD 304 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 304 (540)
.++.+++++...++++|+.++ +++|++..-. ....... ..+.+ |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999985 6679875321 0111112 23556 999999 88999998 889999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeE
Q 009188 305 VSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESAL 384 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i 384 (540)
+.+.........+..++.++.+.+. .+++++.||.|.+||+.++.... ....|++++|+|+| ++.|..||++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766667777778888877654 38889999999999998766543 23489999999999 7889999999
Q ss_pred EEEECCCceE---EEe----------ecCCceeEEEEcCCCCEEEEEe
Q 009188 385 LLLDREAKVE---RYI----------EEDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 385 ~~~d~~~~~~---~~~----------~~~~~i~~~~~s~~~~~l~~~~ 419 (540)
++|+...... ..+ .+...|.++.|.+++.++++-.
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999887662 223 2578899999999999888743
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=2.7e-11 Score=114.23 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=159.6
Q ss_pred ccCcCcEEEEEEecCCCeEEE-------EeCCCcEEEEEeecCCceEEEEE--ecCCCCCeEEEEECcC-CCeEEEeeCC
Q 009188 228 QGHTDEVWFLQFSHNGKYLAS-------SSNDRSAIIWEVDLNGGVTLKHK--LSGHQKPVSCVSWSSD-DQQLLTCGVE 297 (540)
Q Consensus 228 ~~h~~~V~~~~~sp~g~~l~t-------g~~dg~i~iwd~~~~~~~~~~~~--~~~h~~~v~~l~~s~~-~~~l~s~~~d 297 (540)
...-....+++|+++|.++++ +..++.|.+||...+. ...... ..++...+.+++++++ ++++++. ..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-KTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-EEEEECCEETTEECCEEEEEECSSSSEEEEEE-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-EEEEEecccCCCCCCCceEEEecCCCcEEEEE-CC
Confidence 334456789999999988877 5778899999875442 211110 0124567999999999 6655544 44
Q ss_pred CcEEEEECCCCeEEEE-eec----CCCcEEEEEEecCCCEEEEEeCC---------------CcEEEEecCCceEEEeec
Q 009188 298 EAVRRWDVSSGNCLHV-YEK----AGLGLVSCGWHPDRKWIFSGAND---------------KSICMWELGGKELECWKG 357 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~ 357 (540)
+.|.+||.. ++.... ... ....+.+++++++|+.+++...+ +.|..|+.. +.......
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 479999988 765443 221 12357899999999877776654 567777766 44333322
Q ss_pred cccceEEEEEEc----cCCCEEEEE-ecCCeEEEEECC-Cce----EEEee---cC-CceeEEEEcCCCCEEEEEecCCe
Q 009188 358 QRTLKISDLEVT----SDGKQIITM-CKESALLLLDRE-AKV----ERYIE---ED-QTITSFSLSRDNKFLLVNLLNQE 423 (540)
Q Consensus 358 ~~~~~v~~i~~~----~~~~~l~~~-~~d~~i~~~d~~-~~~----~~~~~---~~-~~i~~~~~s~~~~~l~~~~~dg~ 423 (540)
.......++++ ++++.++++ ..++.|.+||.. ... ..... +. ..+..++++++|+++++...++.
T Consensus 170 -~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 -AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp -EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred -CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 22346788999 999766555 467899999975 222 11111 12 56788999999998888888899
Q ss_pred EEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEE-EEeeCCCcEEEEECCC
Q 009188 424 IHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFI-ASGSEDSQVYIWHRAS 477 (540)
Q Consensus 424 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~s~dg~i~iwd~~~ 477 (540)
|.+||..++ .....+..+...... .++ +++++.| ++...++.|..|++..
T Consensus 249 i~~~d~~~g-~~~~~~~~~~~~~~~--i~~-~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGG-QPKMRIRCPFEKPSN--LHF-KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCB-SCSEEEECSSSCEEE--EEE-CTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCC-cEeEEEeCCCCCcee--EEE-CCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998744 344445444333222 333 7888844 4555668899999764
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.45 E-value=4.3e-11 Score=112.34 Aligned_cols=229 Identities=14% Similarity=0.135 Sum_probs=152.2
Q ss_pred cCCCCCeEEEEECcCCC-eEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce
Q 009188 273 SGHQKPVSCVSWSSDDQ-QLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE 351 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 351 (540)
...........|+++++ ++++...++.|..|+. +++ ...+......+..++++++|+.+++...++.|..|+.. +.
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 34455677899999998 5666667889999997 555 44555666778999999999866665566789999986 33
Q ss_pred EEEeecc----ccceEEEEEEccCCCEEEE----Eec-------------CCeEEEEECCCce-EEEeecCCceeEEEEc
Q 009188 352 LECWKGQ----RTLKISDLEVTSDGKQIIT----MCK-------------ESALLLLDREAKV-ERYIEEDQTITSFSLS 409 (540)
Q Consensus 352 ~~~~~~~----~~~~v~~i~~~~~~~~l~~----~~~-------------d~~i~~~d~~~~~-~~~~~~~~~i~~~~~s 409 (540)
....... ....+.+++++++|+..++ +.. .+.|..+|..++. .... .......++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFS 196 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEEC
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEc
Confidence 3333221 1124678999999998876 321 3568888876544 3333 44567889999
Q ss_pred CCCCEEEEEecC------CeEEEEEecCCceee--eEeeC-CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce
Q 009188 410 RDNKFLLVNLLN------QEIHLWNIEGEVKLV--AKYKG-HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 410 ~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~-~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 480 (540)
|+++.|+++... +.|..|++.... .. ..+.. .......+ ...++|++.+ ++.+| |.+|+. .++.
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi---~~d~~G~lwv-~~~~g-v~~~~~-~g~~ 269 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGF---CVDRGGWLWS-SSGTG-VCVFDS-DGQL 269 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSE---EECTTSCEEE-CCSSE-EEEECT-TSCE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeE---EECCCCCEEE-ecCCc-EEEECC-CCCE
Confidence 999988877665 789999987642 11 11111 11111112 2267888544 44444 999997 5777
Q ss_pred eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEE
Q 009188 481 IGALPGHSGAVNCVSWNPANPHMLASASDDRTIR 514 (540)
Q Consensus 481 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~ 514 (540)
+..+..+. .+.+++|+|++. .|..++.++..+
T Consensus 270 ~~~~~~~~-~~~~~~f~~d~~-~L~it~~~~l~~ 301 (305)
T 3dr2_A 270 LGHIPTPG-TASNCTFDQAQQ-RLFITGGPCLWM 301 (305)
T ss_dssp EEEEECSS-CCCEEEECTTSC-EEEEEETTEEEE
T ss_pred EEEEECCC-ceeEEEEeCCCC-EEEEEcCCeEEE
Confidence 77776554 588999998886 555555554333
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=7.9e-12 Score=119.46 Aligned_cols=266 Identities=8% Similarity=0.008 Sum_probs=170.2
Q ss_pred CcEEEEEEecCCCeEEEEe--CCCcEEEEEeecCCceEEEEEe-------cCCCCCeEEEEECcCCCeEEEeeC-----C
Q 009188 232 DEVWFLQFSHNGKYLASSS--NDRSAIIWEVDLNGGVTLKHKL-------SGHQKPVSCVSWSSDDQQLLTCGV-----E 297 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~-------~~h~~~v~~l~~s~~~~~l~s~~~-----d 297 (540)
..+..++++|+|+++++.. .++.++||.++ .+. . ..+ ..|...+..++++++++++++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~--~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDG--L-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTE--E-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCC--e-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 6889999999999888864 23446777776 322 1 222 134568999999999886665433 5
Q ss_pred CcEEEEECCCCeEEEEeecC------CCcEEEEEEecCCCEEEEE-e---CCCcEEEEecCCceEEEeeccccc-eEEEE
Q 009188 298 EAVRRWDVSSGNCLHVYEKA------GLGLVSCGWHPDRKWIFSG-A---NDKSICMWELGGKELECWKGQRTL-KISDL 366 (540)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i 366 (540)
+.|.+||+.+++.+..+... ...+..+++++++..++.+ . .++.|.+||+.++........+.. .....
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 78999999999977776532 2346889999865555444 4 578999999987766555433211 00013
Q ss_pred EEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCC-eEEEEEecC---Cc----eeee-
Q 009188 367 EVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQ-EIHLWNIEG---EV----KLVA- 437 (540)
Q Consensus 367 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~---~~----~~~~- 437 (540)
.+.++|..+.+.+.++.+..|. ..+..++++|+++.|+++...+ .+..++... .. ....
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPH------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp CCEETTEECBEECTTSCEECCC------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred ceeECCEEEEeccCCCceecee------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 3445666666666777665442 2467899999999888887665 555554321 00 0000
Q ss_pred -EeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEE
Q 009188 438 -KYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRI 515 (540)
Q Consensus 438 -~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~i 515 (540)
...++......+ ..+++|.++++...++.|.+||..+++....... +...+.++++.+++. ++++.+..+.+.+
T Consensus 241 ~~~~g~~g~pdgi---a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~-l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 241 IERYSEKPICDGI---SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY-LYFDCNQLHHSAP 316 (343)
T ss_dssp CEEEEECCSCSCE---EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC-EEEEECCGGGSGG
T ss_pred eEecccCCCCceE---EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc-EEEEeCccccccc
Confidence 011111111112 2267899999999999999999856664333322 245689999999885 7777765555544
Q ss_pred ec
Q 009188 516 WG 517 (540)
Q Consensus 516 w~ 517 (540)
|.
T Consensus 317 f~ 318 (343)
T 2qe8_A 317 LN 318 (343)
T ss_dssp GB
T ss_pred cc
Confidence 43
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.42 E-value=3e-11 Score=126.85 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=158.0
Q ss_pred CCCCCeEEEEECcCCCeEEEee-----CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC--------
Q 009188 274 GHQKPVSCVSWSSDDQQLLTCG-----VEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-------- 340 (540)
Q Consensus 274 ~h~~~v~~l~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------- 340 (540)
+|...+..++|||||++|+.+. ....|++||+.+|+.+... ........++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3555788899999999988543 2356999999999865431 111113467899 999999888774
Q ss_pred -----cEEEEecCCceE--EEeec--c-ccceEEEEEEccCCCEEEEEec----CCeEEEEECCCc--e-EEEeecCCce
Q 009188 341 -----SICMWELGGKEL--ECWKG--Q-RTLKISDLEVTSDGKQIITMCK----ESALLLLDREAK--V-ERYIEEDQTI 403 (540)
Q Consensus 341 -----~i~iwd~~~~~~--~~~~~--~-~~~~v~~i~~~~~~~~l~~~~~----d~~i~~~d~~~~--~-~~~~~~~~~i 403 (540)
.|++|++.+... ..... . +......+.++|||++++.... .+.++++|+.+. . .....+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 399999976432 22222 2 2335778999999999876543 258999998765 2 4444444444
Q ss_pred eEEEEcCCCCEEEEEec----CCeEEEEEecCCce-eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC-CC--cEEEEEC
Q 009188 404 TSFSLSRDNKFLLVNLL----NQEIHLWNIEGEVK-LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE-DS--QVYIWHR 475 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~-dg--~i~iwd~ 475 (540)
... ++++|..|+..+. .+.|..+|+.+... ....+..+..... .++++++.|+.... ++ .|++||+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-----~~s~~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-----TVHSGSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-----EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-----EEEEECCEEEEEEEECCeeEEEEEEC
Confidence 444 6677766655443 35788999876521 1234555544432 23666777666554 44 6899998
Q ss_pred CCCceeEeec-CCCCCeEEEEeCCCCCCEEEEEeCC---CcEEEecCCCCCcc
Q 009188 476 ASCDLIGALP-GHSGAVNCVSWNPANPHMLASASDD---RTIRIWGLKDLNVK 524 (540)
Q Consensus 476 ~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~D---g~i~iw~~~~~~~~ 524 (540)
..+. ...+. ...+.+..+.++|+++.++++.+.. +.|..||+.+++..
T Consensus 358 ~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 358 EGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp TSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred CCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7544 44443 3456788888998887566665542 78999999887643
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.42 E-value=2e-11 Score=116.13 Aligned_cols=265 Identities=8% Similarity=-0.076 Sum_probs=173.5
Q ss_pred cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee----------CCCcEEEEECCCCeEEEEeecC------
Q 009188 254 SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG----------VEEAVRRWDVSSGNCLHVYEKA------ 317 (540)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~------ 317 (540)
+|.+.|..+. +.+.++.....+ .+.++||+++++++. .++.|.+||+.+++.+..+...
T Consensus 47 ~vsvID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 7889988765 555666554555 799999999999886 3678999999999999998644
Q ss_pred -CCcEEEEEEecCCCEEEEEeC--CCcEEE--EecCCceEEEeeccccceEEEEEEccCC-CEEEEEecCCeEEEEECCC
Q 009188 318 -GLGLVSCGWHPDRKWIFSGAN--DKSICM--WELGGKELECWKGQRTLKISDLEVTSDG-KQIITMCKESALLLLDREA 391 (540)
Q Consensus 318 -~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~~d~~~ 391 (540)
......++++|||++++++.. +..|.+ +|..+ ........ . ..+.|++ ..+++.+.|+.+.+.|..+
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSAS--C---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSS--C---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCC--c---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 123557899999999999875 356888 88866 22222111 0 1123443 3455666788888888876
Q ss_pred -----ceEEE-----e-ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc-eeeeEeeCCc-----CCeeE--EEee
Q 009188 392 -----KVERY-----I-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV-KLVAKYKGHK-----RSRFV--IRSC 452 (540)
Q Consensus 392 -----~~~~~-----~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-----~~~~~--i~~~ 452 (540)
+.... . ....+. . ++++..++..+. +.+.+.|..+.. ..+..+.... ..... ....
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 32110 1 111222 3 666666666666 999999986531 2222222110 00000 0001
Q ss_pred eccCCCcEEEEeeC---------CCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEe-CCCcEEEecCCCCC
Q 009188 453 FGGLEQAFIASGSE---------DSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS-DDRTIRIWGLKDLN 522 (540)
Q Consensus 453 ~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~Dg~i~iw~~~~~~ 522 (540)
.++++++.++.+.. ++.+.++|..+++.+..+.... ...+++|+|++..++++.. .++.|.++|+.+++
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 23778877776533 2356699999999998887443 6889999999976888888 69999999999999
Q ss_pred ccccc---cCCCceEec
Q 009188 523 VKRKD---CHSNGVHYC 536 (540)
Q Consensus 523 ~~~~~---~~~~~v~~c 536 (540)
..+.. ..+.++.+-
T Consensus 349 vv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 349 DQSSVELDKGPESLSVQ 365 (368)
T ss_dssp EEEECCCCSCCCEEECC
T ss_pred EEEEEECCCCCCEEEee
Confidence 87653 334455443
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=5.8e-11 Score=114.85 Aligned_cols=251 Identities=11% Similarity=0.058 Sum_probs=168.8
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeEEEEe----------CCCcEEEEEeecCCceEEEEEec-C------CCCCeEEE
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYLASSS----------NDRSAIIWEVDLNGGVTLKHKLS-G------HQKPVSCV 282 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~~-~------h~~~v~~l 282 (540)
..+.+..+..-..+ .++++|||++++++. .++.|.++|..+.. ....+. + .......+
T Consensus 108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~---vv~~I~v~g~~r~~~g~~P~~~ 182 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL---PIADIELPDAPRFLVGTYQWMN 182 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC---EEEEEEETTCCCCCBSCCGGGS
T ss_pred CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc---EEEEEECCCccccccCCCcceE
Confidence 34555555544445 899999999888875 36789999987653 333332 1 12345678
Q ss_pred EECcCCCeEEEeeC--CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCCceEEEe----
Q 009188 283 SWSSDDQQLLTCGV--EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGGKELECW---- 355 (540)
Q Consensus 283 ~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~---- 355 (540)
.|+|||++++++.. ++.|.+.|+.+++.+..+..... ....|++ ..+++.+.||.+.+.+..+++....
T Consensus 183 ~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~ 258 (426)
T 3c75_H 183 ALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEV 258 (426)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred EEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence 99999999999874 57899999999999988865331 2233432 4566677788877777754443311
Q ss_pred eccccce-EEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee--------------cCCceeEEEEcCCCCEEEEEec
Q 009188 356 KGQRTLK-ISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE--------------EDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 356 ~~~~~~~-v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
......+ ...+.+.+++..++.....+.+.+.|.......... .......++++|+++.+++...
T Consensus 259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 1111111 123567889998888888999999998765422211 0112233789999988777653
Q ss_pred ----------CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc-EEEEee-CCCcEEEEECCCCceeEee
Q 009188 421 ----------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA-FIASGS-EDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 421 ----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 484 (540)
.+.|.++|..+. +.+.++..... . . .+.++++|+ ++++.. .++.|.++|..+++.+.++
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~-kvv~~I~vg~~-P--~-gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETG-ERINKIELGHE-I--D-SINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEEE-E--C-EEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCCEEEEEECCCC-eEEEEEECCCC-c--C-eEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 357999999987 66666643321 1 1 223388998 888887 5899999999999999887
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.37 E-value=5e-11 Score=125.11 Aligned_cols=239 Identities=16% Similarity=0.226 Sum_probs=153.5
Q ss_pred cCcCcEEEEEEecCCCeEEEEe-----CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc----
Q 009188 229 GHTDEVWFLQFSHNGKYLASSS-----NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA---- 299 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~---- 299 (540)
+|...+..++|||||++||.+. ....|++||+.++.... ..+... ....++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE--TPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE--EEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc--cccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 4667899999999999998542 23579999998764221 122221 12457899 9999999887743
Q ss_pred ---------EEEEECCCCe----EEEEeec-CCCcEEEEEEecCCCEEEEEeC----CCcEEEEecCCc--eEEEeeccc
Q 009188 300 ---------VRRWDVSSGN----CLHVYEK-AGLGLVSCGWHPDRKWIFSGAN----DKSICMWELGGK--ELECWKGQR 359 (540)
Q Consensus 300 ---------i~iwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~ 359 (540)
|++|++.++. .+..... +...+..+.|+|||++|+.... +..|+++|+.++ ....+....
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 9999998764 2322223 3445788999999998865443 248999999654 444444333
Q ss_pred cceEEEEEEccCCCEEEEEec----CCeEEEEECCCce----EEEeecCCceeEEEEcCCCCEEEEEecCC---eEEEEE
Q 009188 360 TLKISDLEVTSDGKQIITMCK----ESALLLLDREAKV----ERYIEEDQTITSFSLSRDNKFLLVNLLNQ---EIHLWN 428 (540)
Q Consensus 360 ~~~v~~i~~~~~~~~l~~~~~----d~~i~~~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d 428 (540)
. ..... ++++|..++..+. .+.|..+|+.+.. .....+...+. .|+++++.|+....++ .|++||
T Consensus 281 ~-~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 281 D-ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp S-SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred C-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 2 22333 6677777665553 3679999988743 34455555554 8999998888776544 688888
Q ss_pred ecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC----CcEEEEECCCCce
Q 009188 429 IEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED----SQVYIWHRASCDL 480 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~ 480 (540)
+.+. ....+...... .+....+++++..++....+ +.|+.||+.+++.
T Consensus 357 ~~g~--~~~~l~~p~~~--~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 357 YEGK--RVREVALPGLG--SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTSC--EEEEECCSSSS--EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCC--eeEEeecCCCc--eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 8754 22333222111 22233335677666555444 7899999987764
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=1.5e-09 Score=101.39 Aligned_cols=227 Identities=10% Similarity=0.064 Sum_probs=147.4
Q ss_pred cccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC
Q 009188 227 LQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV 305 (540)
Q Consensus 227 l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 305 (540)
+..+..---+..|+|++. ++++...++.|..||...+. . ..+ .....+.+++++++|+++++ . ++.|.+||.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-~---~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-V---QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-E---EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-E---EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence 334445566899999654 55666678899999987542 1 112 24567999999999995554 3 567999999
Q ss_pred CCCeEEEEeecC----CCcEEEEEEecCCCEEEEEeCC-----------CcEEEEecCCceEEEeeccccceEEEEEEcc
Q 009188 306 SSGNCLHVYEKA----GLGLVSCGWHPDRKWIFSGAND-----------KSICMWELGGKELECWKGQRTLKISDLEVTS 370 (540)
Q Consensus 306 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 370 (540)
.+++........ ...+..++++|+|+++++.... +.|..++..+ ...... ......+.++|+|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~-~~~~~pngi~~sp 158 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYF-DQVDISNGLDWSL 158 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEE-EEESBEEEEEECT
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEe-eccccccceEEcC
Confidence 888764433321 2357889999999866654321 2444444433 222222 2223568899999
Q ss_pred CCCEEEEE-ecCCeEEEEECC--Cce----EEEe---ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee
Q 009188 371 DGKQIITM-CKESALLLLDRE--AKV----ERYI---EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK 440 (540)
Q Consensus 371 ~~~~l~~~-~~d~~i~~~d~~--~~~----~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 440 (540)
+++.++.+ +.++.|..|+.. +.. .... .....+..++++++|++.++....+.|..||..++ +.+..+.
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~ 237 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVK 237 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEE
Confidence 99877554 557899999863 322 1111 23356789999999988888877889999998765 5666666
Q ss_pred CCcCCeeEEEeeeccCCCcEEEEee
Q 009188 441 GHKRSRFVIRSCFGGLEQAFIASGS 465 (540)
Q Consensus 441 ~~~~~~~~i~~~~~~~~~~~l~s~s 465 (540)
.+.... ..++|..++++.|+.++
T Consensus 238 ~p~~~~--t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 238 LPVDKT--TSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CSSSBE--EEEEEESGGGCEEEEEE
T ss_pred CCCCCc--eEEEEeCCCCCEEEEEc
Confidence 554332 33444347766655444
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=3.4e-10 Score=106.17 Aligned_cols=235 Identities=11% Similarity=0.071 Sum_probs=154.9
Q ss_pred eEEecccCcCcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEE
Q 009188 223 TLQILQGHTDEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVR 301 (540)
Q Consensus 223 ~~~~l~~h~~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 301 (540)
.+..+..+........|+|+|+ +++++..++.|..|+.. + .. ..+..+...+..++++++|+++++...++.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~~---~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-TV---DVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-CE---EEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-CE---EEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 3444455566778999999998 56667778899999863 2 22 23444667799999999999776665667899
Q ss_pred EEECCCCeEEEEeecC----CCcEEEEEEecCCCEEEE----EeC-------------CCcEEEEecCCceEEEeecccc
Q 009188 302 RWDVSSGNCLHVYEKA----GLGLVSCGWHPDRKWIFS----GAN-------------DKSICMWELGGKELECWKGQRT 360 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~ 360 (540)
+|+.. ++........ ...+.+++++++|+..++ |.. .+.|..+|..+++..... ..
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 99975 6543322211 134667999999987776 332 246888887666555444 33
Q ss_pred ceEEEEEEccCCCEEEEEecC------CeEEEEECCCce----EEE-eecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 361 LKISDLEVTSDGKQIITMCKE------SALLLLDREAKV----ERY-IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 361 ~~v~~i~~~~~~~~l~~~~~d------~~i~~~d~~~~~----~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
.....++|+|+++.++++... +.|.+|+..... ... ......+..++++++|++.+ ++. +.|.+|+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~-~gv~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSG-TGVCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCS-SEEEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecC-CcEEEECC
Confidence 467889999999988887765 789999986532 111 11234556799999999544 443 45999998
Q ss_pred cCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 430 EGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
.+ .....+..... . ..+++ +++++.|+.++.++ ++.++
T Consensus 266 ~g--~~~~~~~~~~~-~--~~~~f-~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 DG--QLLGHIPTPGT-A--SNCTF-DQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TS--CEEEEEECSSC-C--CEEEE-CTTSCEEEEEETTE-EEEEE
T ss_pred CC--CEEEEEECCCc-e--eEEEE-eCCCCEEEEEcCCe-EEEEE
Confidence 54 45555554432 2 22334 47888887777654 43333
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.30 E-value=7.1e-11 Score=112.58 Aligned_cols=170 Identities=11% Similarity=0.061 Sum_probs=122.5
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCe-----------EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN-----------CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 346 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 346 (540)
+++.+++++...++++|+.++ +.+|++.+.+ ..... .... |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999885 6669865432 11222 3455 999999 88999998 889999999
Q ss_pred cCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009188 347 LGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHL 426 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 426 (540)
+++.........+...+.++.+.+. .+++++.||.+.+||+.+..... ....|++++|+|+| +++|..||.+++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 9754433333333446777766654 38889999999999998765432 45689999999999 778999999999
Q ss_pred EEecCCcee--eeEe------e---CCcCCeeEEEeeeccCCCcEEEE
Q 009188 427 WNIEGEVKL--VAKY------K---GHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 427 ~d~~~~~~~--~~~~------~---~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
|+.... .. ...+ . +|.. .+....|.+++.++++
T Consensus 187 ~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~---~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 187 FAWRNG-EMEKQFEFSLPSELEELPVEEY---SPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETT-EEEEEEEECCCHHHHTSCTTTS---EEEEEEESSSSEEEEE
T ss_pred EcCCCc-cccccceecCCcccccccCCCe---eEEEEEEecCCeEEEE
Confidence 998776 32 3444 1 1232 2333333667888776
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=8.6e-09 Score=97.50 Aligned_cols=220 Identities=12% Similarity=0.020 Sum_probs=142.5
Q ss_pred CcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 232 DEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 232 ~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
.-..+.+|+|++. ++++...++.|..||...+ .. ..+. ....+.+++|+++|+++++. .+ .|.+||..+++.
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASG---RK-TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---EE-EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---cE-EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence 3456789999755 5556666788999987643 11 1222 34679999999999877764 34 499999988876
Q ss_pred EEEeecC----CCcEEEEEEecCCCEEEEEeC------CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-
Q 009188 311 LHVYEKA----GLGLVSCGWHPDRKWIFSGAN------DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC- 379 (540)
Q Consensus 311 ~~~~~~~----~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~- 379 (540)
....... ...+.+++++|+|+.+++... .+.|..++ ++....... .......++|+|+++.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSCEEEEEET
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCCeEEcCCCCEEEEEEC
Confidence 4433211 235889999999987665442 24566666 444443322 223567899999998776554
Q ss_pred cCCeEEEEECC--Cc-e----EEEe---ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEE
Q 009188 380 KESALLLLDRE--AK-V----ERYI---EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVI 449 (540)
Q Consensus 380 ~d~~i~~~d~~--~~-~----~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 449 (540)
.++.|.+||.. ++ . ..+. .....+..++++++|+++++...++.|..||..+ ..+..+..+.....
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g--~~~~~i~~~~~~~~-- 274 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG--NHIARYEVPGKQTT-- 274 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC--CEEEEEECSCSBEE--
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC--CEEEEEECCCCCcE--
Confidence 56899999975 33 2 1121 1235678899999998887777778999999843 44555554443322
Q ss_pred EeeeccCCCcEEEEee
Q 009188 450 RSCFGGLEQAFIASGS 465 (540)
Q Consensus 450 ~~~~~~~~~~~l~s~s 465 (540)
.+++..+++..|+.++
T Consensus 275 ~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEEESTTSCEEEEEE
T ss_pred EEEEecCCCCEEEEEe
Confidence 2333236766554444
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=5.3e-10 Score=116.55 Aligned_cols=279 Identities=8% Similarity=0.005 Sum_probs=172.1
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC----------e-EEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP----------V-SCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~----------v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
+..|++++.++.|..+|..++ +.+..+..+... + ..+.. .+..+++++.|+.|..+|..+|+.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG---RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC---CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEECCCC---ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence 556777788889999998766 344444332210 0 11122 3567888889999999999999998
Q ss_pred EEeecC-C-CcEEEEEEec---CCCEEEEEe------CCCcEEEEecCCceEEEeecc-c--------------------
Q 009188 312 HVYEKA-G-LGLVSCGWHP---DRKWIFSGA------NDKSICMWELGGKELECWKGQ-R-------------------- 359 (540)
Q Consensus 312 ~~~~~~-~-~~v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~-~-------------------- 359 (540)
..+... . .....+..+| ++ .+++++ .+|.|..||..+++..-.... .
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 887653 1 1001111112 44 455543 368999999988775432211 0
Q ss_pred ----------cceEEEEEEccCCCEEEEEecCCe-------------------EEEEECCCceEEEee----cC------
Q 009188 360 ----------TLKISDLEVTSDGKQIITMCKESA-------------------LLLLDREAKVERYIE----ED------ 400 (540)
Q Consensus 360 ----------~~~v~~i~~~~~~~~l~~~~~d~~-------------------i~~~d~~~~~~~~~~----~~------ 400 (540)
......+++++++..++.+..++. |..+|..++...... +.
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 001125788888899999887764 999999987743321 11
Q ss_pred -CceeEEEEcCCCC---EEEEEecCCeEEEEEecCCceeeeEeeCCc-CCee------------------------EEEe
Q 009188 401 -QTITSFSLSRDNK---FLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-RSRF------------------------VIRS 451 (540)
Q Consensus 401 -~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~------------------------~i~~ 451 (540)
.++.......+|+ .++.++.+|.++++|..++ +++....... .... .+.+
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1122223333564 7888999999999999887 4432211110 0000 0000
Q ss_pred -----------eeccCCCcEEEEeeC---------------------------------------------CCcEEEEEC
Q 009188 452 -----------CFGGLEQAFIASGSE---------------------------------------------DSQVYIWHR 475 (540)
Q Consensus 452 -----------~~~~~~~~~l~s~s~---------------------------------------------dg~i~iwd~ 475 (540)
..++|+..++++... +|.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 122455555555421 478999999
Q ss_pred CCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCC
Q 009188 476 ASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHS 530 (540)
Q Consensus 476 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~ 530 (540)
.+|+.+-.++.+. ++..-.+...+. +++.++.||.|+.||.++|+.+.+...+
T Consensus 463 ~tG~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 463 VKQQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TTTEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeCC
Confidence 9999988876443 233334444564 8899999999999999999998765443
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=5.3e-10 Score=116.34 Aligned_cols=279 Identities=8% Similarity=0.003 Sum_probs=177.6
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC-----------CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK-----------PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
+..|++++.++.|..+|..++ +.+..+..... ....+++ .+..+++++.|+.+..+|..+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTG---NRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTT---EEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCC---cEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEE
Confidence 456777777888999988766 44444443221 0112222 4567888889999999999999999
Q ss_pred EEeecC-C----CcEEEEEEecCCCEEEEEeC------CCcEEEEecCCceEEEeecccc--------------------
Q 009188 312 HVYEKA-G----LGLVSCGWHPDRKWIFSGAN------DKSICMWELGGKELECWKGQRT-------------------- 360 (540)
Q Consensus 312 ~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~-------------------- 360 (540)
..+... . ..+.+--.. .+..+++++. +|.|+.+|..+++..-......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 888754 2 112111111 2345665553 6899999998776553221110
Q ss_pred ------------ceEEEEEEccCCCEEEEEecCC-------------------eEEEEECCCceEEEee----c------
Q 009188 361 ------------LKISDLEVTSDGKQIITMCKES-------------------ALLLLDREAKVERYIE----E------ 399 (540)
Q Consensus 361 ------------~~v~~i~~~~~~~~l~~~~~d~-------------------~i~~~d~~~~~~~~~~----~------ 399 (540)
.....+++++++..++.++.++ .|..+|..++...... +
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 0113578889999998887664 5999999987743321 1
Q ss_pred -CCceeEEEEcCCC---CEEEEEecCCeEEEEEecCCceeeeEeeCCcCC-ee-------EEE-----------------
Q 009188 400 -DQTITSFSLSRDN---KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS-RF-------VIR----------------- 450 (540)
Q Consensus 400 -~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~-------~i~----------------- 450 (540)
......+....+| ..+++++.+|.++++|..++ +++..+...... .. .+.
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 1122333344477 68889999999999999887 444443321100 00 000
Q ss_pred -------eeeccCCCcEEEEeeC-------------------------------------------CCcEEEEECCCCce
Q 009188 451 -------SCFGGLEQAFIASGSE-------------------------------------------DSQVYIWHRASCDL 480 (540)
Q Consensus 451 -------~~~~~~~~~~l~s~s~-------------------------------------------dg~i~iwd~~~~~~ 480 (540)
...++|++.++++... .|.|..||+.+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 1122566666666433 27899999999999
Q ss_pred eEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCC
Q 009188 481 IGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHS 530 (540)
Q Consensus 481 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~ 530 (540)
+-.+. +..++.+..+...+. +++.++.||.+++||.++++++.....+
T Consensus 470 ~W~~~-~~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 470 AWSVE-HVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEEEE-ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EeecC-CCCCCcCcceEeCCC-EEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 87776 334444445555665 7888899999999999999998765443
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=6.9e-09 Score=100.43 Aligned_cols=258 Identities=10% Similarity=0.027 Sum_probs=161.4
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcE
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGL 321 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 321 (540)
++..++.++.++.|..+|..++. ................. .+..++.++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~---~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGT---VAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCC---EEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCC---EEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 45678888899999999987663 33333322211111122 24577788889999999999999888776543211
Q ss_pred -----EEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccce----EE---EEEEc--cCCCEEEEEecCCeEEEE
Q 009188 322 -----VSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLK----IS---DLEVT--SDGKQIITMCKESALLLL 387 (540)
Q Consensus 322 -----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~---~i~~~--~~~~~l~~~~~d~~i~~~ 387 (540)
...... +..+++++.++.|..+|..+++..-........ +. .+... ..+..+++++.++.+..+
T Consensus 177 ~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 177 SLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp --CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred eecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 111222 457888888999999999776654332211100 00 00011 135677888889999999
Q ss_pred ECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC-CeeEEEeeeccCCCcEEEEeeC
Q 009188 388 DREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR-SRFVIRSCFGGLEQAFIASGSE 466 (540)
Q Consensus 388 d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~s~ 466 (540)
|..++.............+.. ++..+++++.++.+..+|..++ +.......... ..... ...+..|+.++.
T Consensus 255 d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~-----~~~~~~l~v~~~ 326 (376)
T 3q7m_A 255 DLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTSP-----VLYNGNLVVGDS 326 (376)
T ss_dssp ETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCCC-----EEETTEEEEECT
T ss_pred ECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccCC-----EEECCEEEEEeC
Confidence 998876444443344444444 4677888888999999999887 44444331111 11111 012467888899
Q ss_pred CCcEEEEECCCCceeEeecCCCCCeEE-EEeCCCCCCEEEEEeCCCcEEEec
Q 009188 467 DSQVYIWHRASCDLIGALPGHSGAVNC-VSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 467 dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
+|.|+++|..+|+.+.........+.+ ... .++ .|+.++.+|.|..|+
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~--~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADG--KLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETT--EEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECC--EEEEEeCCCEEEEEe
Confidence 999999999999998777653333322 222 233 678889999999886
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=5e-09 Score=101.41 Aligned_cols=267 Identities=8% Similarity=-0.036 Sum_probs=165.9
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC---------CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH---------QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH 312 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h---------~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 312 (540)
.+..+++++.++.|..+|..++. ........ ...+.+. ...++..++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGK---EIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC---EEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCc---eeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 35678888888999999987653 22222221 2223222 12245678888899999999999999987
Q ss_pred EeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceE-----EEEEEccCCCEEEEEecCCeEEEE
Q 009188 313 VYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKI-----SDLEVTSDGKQIITMCKESALLLL 387 (540)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~~~d~~i~~~ 387 (540)
............... +..+++++.++.|..+|..+++............ ..... .+..+++++.++.+..+
T Consensus 128 ~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 128 QTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEE
T ss_pred EEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEE
Confidence 776543221112222 4578888999999999997766543332221110 11112 24567888889999999
Q ss_pred ECCCceEEEeec-CCc--------eeEEEEcC--CCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccC
Q 009188 388 DREAKVERYIEE-DQT--------ITSFSLSR--DNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGL 456 (540)
Q Consensus 388 d~~~~~~~~~~~-~~~--------i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 456 (540)
|..++....... ..+ +..+...| .+..+++++.++.+..+|..++ +........ .... . ..
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG-~~~w~~~~~--~~~~--~---~~ 275 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG-QIMWKRELG--SVND--F---IV 275 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC-CEEEEECCC--CEEE--E---EE
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC-cEEeeccCC--CCCC--c---eE
Confidence 998766333221 110 00011111 3567788888999999999877 444333321 1111 1 12
Q ss_pred CCcEEEEeeCCCcEEEEECCCCceeEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccc
Q 009188 457 EQAFIASGSEDSQVYIWHRASCDLIGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKD 527 (540)
Q Consensus 457 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 527 (540)
++..++.++.+|.|+.+|..+++.+..... ....+...... +. .|+.++.+|.|.++|..+++.....
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcEEEEE
Confidence 356778888899999999999998876652 22222223332 33 6888889999999999999887653
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=1.4e-09 Score=113.34 Aligned_cols=258 Identities=12% Similarity=0.103 Sum_probs=163.9
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecC--CCCCeEEEEECc---CCCeEEEee------CCCcEEEEECCCCeE
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG--HQKPVSCVSWSS---DDQQLLTCG------VEEAVRRWDVSSGNC 310 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~---~~~~l~s~~------~dg~i~iwd~~~~~~ 310 (540)
.+..|++++.|+.+..+|..++. .+..+.. +......+..+| ++. ++.++ .+|.|..||..+|+.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~---~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQ---RAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC---EEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred ECCEEEEEccCCEEEEEECCCCC---EeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcE
Confidence 35678888999999999988763 3333322 111111111112 444 44443 368999999999999
Q ss_pred EEEeecCC-------------------------------CcEEEEEEecCCCEEEEEeCCCc------------------
Q 009188 311 LHVYEKAG-------------------------------LGLVSCGWHPDRKWIFSGANDKS------------------ 341 (540)
Q Consensus 311 ~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~dg~------------------ 341 (540)
+..+.... .....++++|++..++.+..++.
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 88875311 01125788898889999888764
Q ss_pred -EEEEecCCceEEEeecc--c-------cceEEEEEEccCCC---EEEEEecCCeEEEEECCCceEEEeecCC-------
Q 009188 342 -ICMWELGGKELECWKGQ--R-------TLKISDLEVTSDGK---QIITMCKESALLLLDREAKVERYIEEDQ------- 401 (540)
Q Consensus 342 -i~iwd~~~~~~~~~~~~--~-------~~~v~~i~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~------- 401 (540)
|..+|.++++..-.... + ...+.......+|+ .++.++.+|.++++|..+++........
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 99999988776543321 1 11222223334565 7888999999999999887632111000
Q ss_pred ----------------------------------ceeEEEEcCCCCEEEEEec---------------------------
Q 009188 402 ----------------------------------TITSFSLSRDNKFLLVNLL--------------------------- 420 (540)
Q Consensus 402 ----------------------------------~i~~~~~s~~~~~l~~~~~--------------------------- 420 (540)
.-..++++|+...+++...
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 0123788998888887633
Q ss_pred ------------------CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeE
Q 009188 421 ------------------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIG 482 (540)
Q Consensus 421 ------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 482 (540)
+|.|+.||+.++ +.+..+..+...... .....+.+++.|+.||.++.||.++|+.+.
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~g----~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVTIFNGG----TLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESSSCCCC----EEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccCCCCccCc----cceECCCEEEEECCCCcEEEEECCCCccce
Confidence 377999999887 555555443321111 113456788999999999999999999998
Q ss_pred eecCCCCC-eEEEEeCCCCCCEEEEEe
Q 009188 483 ALPGHSGA-VNCVSWNPANPHMLASAS 508 (540)
Q Consensus 483 ~~~~h~~~-v~~l~~~~~~~~~l~s~~ 508 (540)
++....+. ..-+.|..+|.+++++.+
T Consensus 511 ~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 511 EQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eeeCCCCcccCceEEEECCEEEEEEEe
Confidence 88754322 234667778876666543
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=2.2e-09 Score=111.74 Aligned_cols=269 Identities=10% Similarity=0.062 Sum_probs=172.6
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC-C----CCeEE-EEECcCCCeEEEeeC------CCcEEEEECCCCe
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH-Q----KPVSC-VSWSSDDQQLLTCGV------EEAVRRWDVSSGN 309 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h-~----~~v~~-l~~s~~~~~l~s~~~------dg~i~iwd~~~~~ 309 (540)
++..|++++.|+.+..+|..++. .+..+..+ . ..+.+ ... .+..++.++. ++.|+.+|..+|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~---~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGK---EVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC---EEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECCCCC---EEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 45678888999999999988763 33444433 1 11111 111 2345555543 6899999999999
Q ss_pred EEEEeecCCCc--------------------------------EEEEEEecCCCEEEEEeCCC-----------------
Q 009188 310 CLHVYEKAGLG--------------------------------LVSCGWHPDRKWIFSGANDK----------------- 340 (540)
Q Consensus 310 ~~~~~~~~~~~--------------------------------v~~~~~~~~~~~l~~~~~dg----------------- 340 (540)
.+..+...... ...+++++++..++.+..++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 99887643211 12467889888998887664
Q ss_pred --cEEEEecCCceEEEeecc--c-------cceEEEEEEccCC---CEEEEEecCCeEEEEECCCceEEEeecCC-----
Q 009188 341 --SICMWELGGKELECWKGQ--R-------TLKISDLEVTSDG---KQIITMCKESALLLLDREAKVERYIEEDQ----- 401 (540)
Q Consensus 341 --~i~iwd~~~~~~~~~~~~--~-------~~~v~~i~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----- 401 (540)
.|..+|.++++..-.... + .....-+....+| ..++.++.+|.++++|..+++........
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 499999988776543221 1 1122223344477 67889999999999999887632221110
Q ss_pred --------ce------------------------eEEEEcCCCCEEEEEecC----------------------------
Q 009188 402 --------TI------------------------TSFSLSRDNKFLLVNLLN---------------------------- 421 (540)
Q Consensus 402 --------~i------------------------~~~~~s~~~~~l~~~~~d---------------------------- 421 (540)
++ ..++++|++..+++...+
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 01 157889998888876542
Q ss_pred ---------------CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC
Q 009188 422 ---------------QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG 486 (540)
Q Consensus 422 ---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 486 (540)
|.|..||+.++ +.+..+...... .. ......+.+++.++.||.+++||..+|+.+..+..
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~-~~---g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHVSPW-NG---GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEESSSC-CC---CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccccccccCCCCCccEEEEEeCCCC-cEEeecCCCCCC-cC---cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 67999999887 555444422211 11 01134567888899999999999999999988874
Q ss_pred CC-CCeEEEEeCCCCCCEEEEEeC----------------CCcEEEecCCC
Q 009188 487 HS-GAVNCVSWNPANPHMLASASD----------------DRTIRIWGLKD 520 (540)
Q Consensus 487 h~-~~v~~l~~~~~~~~~l~s~~~----------------Dg~i~iw~~~~ 520 (540)
.. ....-+.|.++|..+++..+. .+.+.+|.+..
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 33 222345566778655555333 36788888764
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=8.9e-10 Score=104.81 Aligned_cols=256 Identities=11% Similarity=-0.005 Sum_probs=163.3
Q ss_pred CcceEEecccCcCcEEEEEEecCCCeEEEEe----------CCCcEEEEEeecCCceEEEEEecCC-------CCCeEEE
Q 009188 220 PSRTLQILQGHTDEVWFLQFSHNGKYLASSS----------NDRSAIIWEVDLNGGVTLKHKLSGH-------QKPVSCV 282 (540)
Q Consensus 220 ~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l 282 (540)
..+.+..+..-..+ .+.++|||++++++. .++.|.+||..+. +...++..+ ......+
T Consensus 55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---~vv~~I~v~~~~~~~~g~~P~~i 129 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---CEEEEEEETTSCSCCBSCCTTSE
T ss_pred CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---CEEEEEECCCccccccCCCcceE
Confidence 35666666554555 799999999998886 3688999999876 344444322 1235678
Q ss_pred EECcCCCeEEEeeC--CCcEEE--EECCCCeEEEEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecCC-----ceE
Q 009188 283 SWSSDDQQLLTCGV--EEAVRR--WDVSSGNCLHVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELGG-----KEL 352 (540)
Q Consensus 283 ~~s~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-----~~~ 352 (540)
+++|||++++++.. +..+.+ +|+.+ +..+..... ....|++ ..+++.+.||.+.+.|+.+ ++.
T Consensus 130 a~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 130 GNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred EEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence 99999999998874 456888 99877 444432211 1223443 3455667788888888875 332
Q ss_pred EE----eeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEee--------------cCCceeEEEEcCCCCE
Q 009188 353 EC----WKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIE--------------EDQTITSFSLSRDNKF 414 (540)
Q Consensus 353 ~~----~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------~~~~i~~~~~s~~~~~ 414 (540)
.. .......+. . .+++..++..+. +.+.+.|..+....... .......++++|+++.
T Consensus 203 ~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 203 GAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred EEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 21 011111222 3 666677666666 99999998653311111 0111223789999998
Q ss_pred EEEEec-C--------CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCc-EEEEee-CCCcEEEEECCCCceeEe
Q 009188 415 LLVNLL-N--------QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQA-FIASGS-EDSQVYIWHRASCDLIGA 483 (540)
Q Consensus 415 l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~ 483 (540)
++++.. . +.+.++|+.+. +.+..+..... ... ..++++|+ .+++.. .++.|.++|+.+++.+.+
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~~-p~g---i~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGHD-SDA---IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEEE-ECE---EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred EEEEeccccCcccccCCCEEEEECCCC-eEEEEEECCCC-cce---EEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 887654 2 35679999887 55555543332 112 23378887 556666 599999999999999999
Q ss_pred ecCCCCCeEEEEeCC
Q 009188 484 LPGHSGAVNCVSWNP 498 (540)
Q Consensus 484 ~~~h~~~v~~l~~~~ 498 (540)
+.... ....+++.+
T Consensus 353 I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 353 VELDK-GPESLSVQN 366 (368)
T ss_dssp CCCCS-CCCEEECCC
T ss_pred EECCC-CCCEEEeec
Confidence 98543 345666654
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.16 E-value=4.4e-08 Score=89.70 Aligned_cols=250 Identities=8% Similarity=-0.030 Sum_probs=155.6
Q ss_pred CeEEEEeCCCcEEEEEeecCCce--EEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEEEEECCCCeEEEEeecCCCc
Q 009188 244 KYLASSSNDRSAIIWEVDLNGGV--TLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVRRWDVSSGNCLHVYEKAGLG 320 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 320 (540)
++|+.+.. +.|+.++++..... .....+......+..++|++++..|+.+ ...+.|.+++...+............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555553 46888887643210 0001111112347789999976655554 45678999998766544333333356
Q ss_pred EEEEEEecCCCEEEEEe-CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec---CCeEEEEECCCceEEE
Q 009188 321 LVSCGWHPDRKWIFSGA-NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK---ESALLLLDREAKVERY 396 (540)
Q Consensus 321 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~ 396 (540)
...+++++++..++.+. ..+.|.++++++................++++|++..++.+.. .+.|..++........
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 78999999766665554 5678999999765433333323246789999997766665554 4688888887654222
Q ss_pred e--ecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEE
Q 009188 397 I--EEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIW 473 (540)
Q Consensus 397 ~--~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iw 473 (540)
. ........+++++++..|.++. ..+.|..+|..+. ...........+ ..+ +. . .+.++++...++.|..+
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~P-~gi--~~-d-~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQYP-FAV--TS-Y-GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCSE-EEE--EE-E-TTEEEEEETTTTEEEEE
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCCCc-eEE--EE-e-CCEEEEEECCCCeEEEE
Confidence 2 2335678999999876665554 5678999998754 222223322211 222 22 2 34455555567899999
Q ss_pred ECCCCceeEeecCCC-CCeEEEEeCCCC
Q 009188 474 HRASCDLIGALPGHS-GAVNCVSWNPAN 500 (540)
Q Consensus 474 d~~~~~~~~~~~~h~-~~v~~l~~~~~~ 500 (540)
|..+++.+..+.... .....+++.|++
T Consensus 235 d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 235 DLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred eCCCCCceEEEccccccccceeeecCcc
Confidence 999999888876433 246778887765
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.13 E-value=5.1e-11 Score=114.79 Aligned_cols=202 Identities=11% Similarity=0.028 Sum_probs=113.5
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEE-EeeccccceEE-
Q 009188 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELE-CWKGQRTLKIS- 364 (540)
Q Consensus 287 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~- 364 (540)
++..+++++.||.|..||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+++.. .+.......+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988876 44555555667778888889999999999765543 22211110110
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC
Q 009188 365 DLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR 444 (540)
Q Consensus 365 ~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 444 (540)
...+ .++..+++++.++.++.||..++.......... ...++|++..+++++.++.|+.||.+++ +....+.....
T Consensus 86 sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~~ 161 (369)
T 2hz6_A 86 SPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTR-ELRWNATYFDY 161 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSS-SCCCEEEEEEE
T ss_pred CceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCCC-CEEEeEecccc
Confidence 0011 134567788889999999998876332221111 2345678889999999999999999877 33333321110
Q ss_pred CeeEEEeeeccCCC---cEEEEeeCCCcEEEEECCCCceeEeecCCCCCeE-EEEeCCCC
Q 009188 445 SRFVIRSCFGGLEQ---AFIASGSEDSQVYIWHRASCDLIGALPGHSGAVN-CVSWNPAN 500 (540)
Q Consensus 445 ~~~~i~~~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~ 500 (540)
.......+. ..+++++.||.|+.||..+|+.+..... .+++. ...+++++
T Consensus 162 -----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 162 -----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp -----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS
T ss_pred -----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc
Confidence 011112221 4567788999999999999999877763 34444 34566655
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.11 E-value=1.3e-08 Score=100.71 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=158.8
Q ss_pred CCCeEEEeeC-CCcEEEEECCCCeEEEEeecC-CCcEEEEEE-e-cCCCEEEEEe------------------CCCcEEE
Q 009188 287 DDQQLLTCGV-EEAVRRWDVSSGNCLHVYEKA-GLGLVSCGW-H-PDRKWIFSGA------------------NDKSICM 344 (540)
Q Consensus 287 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~i 344 (540)
||++++.... ++.|.+.|+.+.++.+.+... ......+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7888877665 456999999999998866432 346788887 5 8999999885 2457999
Q ss_pred EecCCceEEEeeccccceEEEEEEccCCCEEEEEecCC--------------------------------------eEEE
Q 009188 345 WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKES--------------------------------------ALLL 386 (540)
Q Consensus 345 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~--------------------------------------~i~~ 386 (540)
+|..+.+......... ....++++|+|+++++.+.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9998876655443322 456688999999999888553 3666
Q ss_pred EECCC--c-e-EEEeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCc-----------eeeeEeeCCcCCeeEEE
Q 009188 387 LDREA--K-V-ERYIEEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEV-----------KLVAKYKGHKRSRFVIR 450 (540)
Q Consensus 387 ~d~~~--~-~-~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~~i~ 450 (540)
.|..+ . . ...+.......++.++|||+++++++ .++.|.++|+.+.. ..........+ ...
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g---P~h 335 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG---PLH 335 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC---EEE
T ss_pred EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC---cce
Confidence 77766 2 2 34444556778899999999888876 47899999998541 12222222222 233
Q ss_pred eeeccCCCcEEEEeeCCCcEEEEECCC----------CceeEeecCCCCCe-----EEEEeCCCCCCEEEEEeC---CCc
Q 009188 451 SCFGGLEQAFIASGSEDSQVYIWHRAS----------CDLIGALPGHSGAV-----NCVSWNPANPHMLASASD---DRT 512 (540)
Q Consensus 451 ~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~---Dg~ 512 (540)
..| +++|....+..-|++|.+||+.+ .+.+..+..|-.+- .++..+|||+ +|++... |+.
T Consensus 336 ~aF-~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk-~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 336 TAF-DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND-WLVCLSKFSKDRF 413 (595)
T ss_dssp EEE-CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS-EEEEEESCCTTSS
T ss_pred EEE-CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC-EEEEcCCCCcccc
Confidence 333 88895556677899999999887 56677777665432 2234689997 5555532 432
Q ss_pred ----------EEEecCCCCCccc
Q 009188 513 ----------IRIWGLKDLNVKR 525 (540)
Q Consensus 513 ----------i~iw~~~~~~~~~ 525 (540)
-.++|+.++++..
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSCEE
T ss_pred ccCCCCCCCcceEEEcCCCcEEE
Confidence 1889997766543
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=6.4e-08 Score=92.49 Aligned_cols=224 Identities=14% Similarity=0.074 Sum_probs=146.2
Q ss_pred cCCCeEEE-EeCCCcEEEEEeecC-CceEEEEEec------C-CCCCeEEEEECcCCCeEEEeeCC------CcEEEEEC
Q 009188 241 HNGKYLAS-SSNDRSAIIWEVDLN-GGVTLKHKLS------G-HQKPVSCVSWSSDDQQLLTCGVE------EAVRRWDV 305 (540)
Q Consensus 241 p~g~~l~t-g~~dg~i~iwd~~~~-~~~~~~~~~~------~-h~~~v~~l~~s~~~~~l~s~~~d------g~i~iwd~ 305 (540)
+++++|+. |..++.|.++|+.+. ...+...++. . .......+..+|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887765 556789999998633 3345555552 1 11245667888999 77766555 78999999
Q ss_pred CCCeEEEEeecCCCc---EEEEEEecCCCEEEEEe-------------------CCCcEEEEecCCceEEEeecc--ccc
Q 009188 306 SSGNCLHVYEKAGLG---LVSCGWHPDRKWIFSGA-------------------NDKSICMWELGGKELECWKGQ--RTL 361 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~--~~~ 361 (540)
.+++.+..+.....+ -..+.|+|+++.+++.. .+.+|.+||+.+++....... ...
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 999999998743222 34578899999888875 367999999987766554433 223
Q ss_pred eEEEEEE--ccCCCEEEEEec------CCeEEEEECCCce---EEEe--ec-----------------CCceeEEEEcCC
Q 009188 362 KISDLEV--TSDGKQIITMCK------ESALLLLDREAKV---ERYI--EE-----------------DQTITSFSLSRD 411 (540)
Q Consensus 362 ~v~~i~~--~~~~~~l~~~~~------d~~i~~~d~~~~~---~~~~--~~-----------------~~~i~~~~~s~~ 411 (540)
....+.| +|+++++.+++. +++|.+|....+. ...+ .. ......+.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4556666 999999888875 5577765544332 1100 00 245788999999
Q ss_pred CCEEEEEec-CCeEEEEEecCC--ceeeeEeeCCcC--------Ce---eEEEeeeccCCCcEEEEee
Q 009188 412 NKFLLVNLL-NQEIHLWNIEGE--VKLVAKYKGHKR--------SR---FVIRSCFGGLEQAFIASGS 465 (540)
Q Consensus 412 ~~~l~~~~~-dg~i~i~d~~~~--~~~~~~~~~~~~--------~~---~~i~~~~~~~~~~~l~s~s 465 (540)
|++|.++.. .+.|.+||+... .+.+........ .. ..-+....+++|++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999988776 679999998532 234444332200 00 0011222388999888877
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=2.5e-09 Score=101.32 Aligned_cols=269 Identities=12% Similarity=0.066 Sum_probs=164.2
Q ss_pred cCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCC
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG 308 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 308 (540)
.+...+.++...++|. |..++.+ +..+|.. +... ..+...........+. +..+..++.++.+..+|.. +
T Consensus 57 ~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~-g~~~---~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g 126 (330)
T 3hxj_A 57 SGEIIECRPSIGKDGT-IYFGSDK--VYAINPD-GTEK---WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G 126 (330)
T ss_dssp GGGEEEECCEETTTTE-ECCSSCE--EEEECCC-GGGG---GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-S
T ss_pred cCCCcccceEEecCCc-EEEecCc--EEEECCC-CcEE---EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C
Confidence 3445567777777775 4555544 7777642 2111 1111111112222232 5567778888999999988 8
Q ss_pred eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEE
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d 388 (540)
+...........+.++...+++. ++.++.++.|..+|.. +............+.++...+++...+. + +.+..+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d 201 (330)
T 3hxj_A 127 TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN 201 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC
T ss_pred CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC
Confidence 87777766655566666766665 6667888999999998 4443322233335666777777775544 4 8889999
Q ss_pred CCCceE-EEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC
Q 009188 389 REAKVE-RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED 467 (540)
Q Consensus 389 ~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d 467 (540)
...... ........+.++..+++|. +.+++.++.+..+|..+ .....+......... .....++ .|..++.+
T Consensus 202 ~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g--~~~~~~~~~~~~~~~---~~~~~~g-~l~v~t~~ 274 (330)
T 3hxj_A 202 PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG--TEKWRFKTGKRIESS---PVIGNTD-TIYFGSYD 274 (330)
T ss_dssp TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS--CEEEEEECSSCCCSC---CEECTTS-CEEEECTT
T ss_pred CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC--CEeEEeeCCCCcccc---ceEcCCC-eEEEecCC
Confidence 443332 2233345678888888875 55566678888887533 333444332221111 1113344 56678888
Q ss_pred CcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 468 SQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 468 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
|.|+.+|. +++.+..+......+.++...+++. |..++.+|.+++...+..+
T Consensus 275 ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~--l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 275 GHLYAINP-DGTEKWNFETGSWIIATPVIDENGT--IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC--EEEECTTSCEEEEEC----
T ss_pred CCEEEECC-CCcEEEEEEcCCccccceEEcCCCE--EEEEcCCCeEEEEeccccc
Confidence 89999995 7877776665566677888877774 6678899999988776543
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.06 E-value=8.3e-10 Score=104.72 Aligned_cols=264 Identities=10% Similarity=0.031 Sum_probs=157.4
Q ss_pred EEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeec
Q 009188 237 LQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEK 316 (540)
Q Consensus 237 ~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 316 (540)
+....+| .+..++.++.|..|| ..+ +.......+...+.++...+++. +..++.+ +..+|. +++....+..
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~ 95 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDG---SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT 95 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTS---CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCC---cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC
Confidence 3444455 466777788899998 544 22333333334456777776665 4444444 888885 6654433332
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceE-E
Q 009188 317 AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE-R 395 (540)
Q Consensus 317 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~ 395 (540)
.........+. +..+.+++.++.|..+|.. +............+.++...+++. +..++.++.+..+|...... .
T Consensus 96 ~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~ 171 (330)
T 3hxj_A 96 KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWR 171 (330)
T ss_dssp -----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSCEEEE
T ss_pred CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEE
Confidence 22222223333 5578888889999999988 443332222333455666676776 66677889999999984332 2
Q ss_pred EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC
Q 009188 396 YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 396 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
.......+.++...+++..++. + +.+..+| .++ .....+........ .....++|. +..++.++.|..+|
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g-~~~~~~~~~~~~~~---~~~~~~~g~-l~v~t~~~gl~~~~- 241 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDG-TEKWNFYAGYWTVT---RPAISEDGT-IYVTSLDGHLYAIN- 241 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTS-CEEEEECCSSCCCS---CCEECTTSC-EEEEETTTEEEEEC-
T ss_pred EecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCC-cEEEEEccCCccee---ceEECCCCe-EEEEcCCCeEEEEC-
Confidence 2333456677788778875544 4 8899999 544 33333333222222 222244554 55677788898887
Q ss_pred CCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccc
Q 009188 476 ASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRK 526 (540)
Q Consensus 476 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 526 (540)
.+++.+..+......+.++...+++ .|..++.+|.|..+|. +++....
T Consensus 242 ~~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 242 PDGTEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp TTSCEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSCEEEE
T ss_pred CCCCEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCcEEEE
Confidence 4666666665554445556666656 4667788888999996 5665443
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.06 E-value=1e-08 Score=97.68 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=141.8
Q ss_pred cCcCcEEEEEEecCCCeEEEEeC-----CCcEEEEEeecCCceEEEEEecC------CCCCeEEEEECcCCCeE-EEee-
Q 009188 229 GHTDEVWFLQFSHNGKYLASSSN-----DRSAIIWEVDLNGGVTLKHKLSG------HQKPVSCVSWSSDDQQL-LTCG- 295 (540)
Q Consensus 229 ~h~~~V~~~~~sp~g~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l-~s~~- 295 (540)
+|-..+..++++|+|++.++-.. ++.|.+||+.++ +....+.. +...+..+++++++..+ ++-.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg---~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN---QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT---EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC---eEEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 46678999999999986665433 578999998755 33333322 23456899999865444 5544
Q ss_pred --CCCcEEEEECCCCeEEEEeecCCCcEE-EEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCC
Q 009188 296 --VEEAVRRWDVSSGNCLHVYEKAGLGLV-SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG 372 (540)
Q Consensus 296 --~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 372 (540)
.++.|.+||+.+++..+.+..|..... ...+.++|..+.+.+.+|.+..|.. .+..++++|+|
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg 206 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAEN 206 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--------------CEEEEEECTTS
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec--------------ccceeEeccCC
Confidence 578899999999988777654321100 1344557777777788888766642 46789999999
Q ss_pred CEEEEEecCC-eEEEEECCC---c-----e----EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe
Q 009188 373 KQIITMCKES-ALLLLDREA---K-----V----ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 373 ~~l~~~~~d~-~i~~~d~~~---~-----~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 439 (540)
+.++.+...+ .+..++... . . .....+......++++++|+++++...++.|.+||..++ ......
T Consensus 207 ~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-~~~~~~ 285 (343)
T 2qe8_A 207 EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-AYKLLV 285 (343)
T ss_dssp CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-EEEEEE
T ss_pred CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-CEEEEE
Confidence 9888887665 566665321 0 0 122233446778999999999999988999999998333 322222
Q ss_pred eCCcCCeeEEEeeeccCCCcEEEEeeCCCcE
Q 009188 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDSQV 470 (540)
Q Consensus 440 ~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i 470 (540)
... .......+++ ++++.++++.+..+.+
T Consensus 286 ~~~-~~~~p~~va~-~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 286 TDE-KLSWTDSFNF-GSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECG-GGSCEEEEEE-CTTSCEEEEECCGGGS
T ss_pred ECC-ceecCCeeEE-CCCCcEEEEeCccccc
Confidence 211 1111222222 5667766666544433
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.04 E-value=2.9e-11 Score=116.50 Aligned_cols=260 Identities=10% Similarity=-0.047 Sum_probs=133.8
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCc-
Q 009188 242 NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLG- 320 (540)
Q Consensus 242 ~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~- 320 (540)
++..+++++.||.|+.||..++ +....+.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC---CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCC---CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 5778999999999999998866 34444444 45555556667888888889999999999999887666433111
Q ss_pred EE-EEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeec
Q 009188 321 LV-SCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEE 399 (540)
Q Consensus 321 v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 399 (540)
+. +..+. ++..+++++.++.|+.||..+++.......+. ...++|++..+++++.++.++.||..++.......
T Consensus 83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred cccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 10 00111 34577888889999999998877654333221 23456688899999999999999998765211111
Q ss_pred CCceeEEEEcCCC---CEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEE--eeCCCcEEEEE
Q 009188 400 DQTITSFSLSRDN---KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIAS--GSEDSQVYIWH 474 (540)
Q Consensus 400 ~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~s~dg~i~iwd 474 (540)
........++++. ..+++++.+|.++.||..++ +.+..+.... +. +.....+.++...+. ...++.++.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~-pv--~~~~~~~~dg~~~v~~~~~~~~~l~~ld 233 (369)
T 2hz6_A 158 YFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQNYAS-PV--VAFYVWQREGLRKVMHINVAVETLRYLT 233 (369)
T ss_dssp EEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEECSS-CE--EEEEECTTSSCEEECCEEEEHHHHHHHH
T ss_pred cccccCccccCCccccceEEEECCCCEEEEEECCCC-cEEEEecCCC-ce--EEEEEecCCceEeccceeecccceeeee
Confidence 1112233344432 56778888999999999877 4444444222 21 122222344432110 00133455666
Q ss_pred CCCCc----eeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 475 RASCD----LIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 475 ~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
..+|+ .+-.+.. .+.+.+... .+. .++.++.||.|+.++..
T Consensus 234 ~~tG~~~~~~~W~~~~-~~~~~sp~~--~~g-~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 234 FMSGEVGRITKWKYPF-PKETEAKSK--LTP-TLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHTSCCCC-CCHHHHHHH--SEE-EECBEECSSCEECCEEE
T ss_pred hhcCCcccceeeeecc-Ccccccccc--ccc-eEEEecccCCEEecCcc
Confidence 66665 3333221 111111111 122 56777778888877765
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.03 E-value=2.8e-07 Score=86.93 Aligned_cols=237 Identities=12% Similarity=0.092 Sum_probs=151.1
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecC--------------------CCcEEEEEEecCCCEEEEE
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA--------------------GLGLVSCGWHPDRKWIFSG 336 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~l~~~ 336 (540)
....+++|++++++++++..++.|..|+..+++.. .+... ...+..+++.+++..|+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34567899999987888888999999998766543 22210 1247889999833356666
Q ss_pred eCCCcEEEEecCCceEEEeecc----ccceEEEEEEcc-CCCEEEEEec-----------------CCeEEEEECCCceE
Q 009188 337 ANDKSICMWELGGKELECWKGQ----RTLKISDLEVTS-DGKQIITMCK-----------------ESALLLLDREAKVE 394 (540)
Q Consensus 337 ~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~-~~~~l~~~~~-----------------d~~i~~~d~~~~~~ 394 (540)
...+.|..+|..++....+... .......+++.+ +|+..++-.. ++.|..+|..+...
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 5556688899876654333221 123578899999 9987666432 36789999876553
Q ss_pred -EEeecCCceeEEEEcCCCCEEEEE-ecCCeEEEEEecCCc-eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC-----
Q 009188 395 -RYIEEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGEV-KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE----- 466 (540)
Q Consensus 395 -~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~----- 466 (540)
...........++++|+++.++++ +.++.|..|++.+.. .....+..... ...+ ...++|++.++...
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi---~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI---KRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE---EECTTSCEEEEEEEETTSS
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe---EECCCCCEEEEecCccccc
Confidence 223333556789999999876665 556899999987521 01111111111 1122 23678887666544
Q ss_pred -----CCcEEEEECCCCceeEeecCCC----CCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 467 -----DSQVYIWHRASCDLIGALPGHS----GAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 467 -----dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
.+.|..+|. .++.+..+.... ..++++++. ++ .++++....+.|..+++...
T Consensus 254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEecccc
Confidence 467888886 477776665432 346777763 45 47777777889999988643
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=4.4e-08 Score=96.95 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=161.6
Q ss_pred cCCCeEEEEeC-CCcEEEEEeecCCceEEEEEec-CCCCCeEEEEE-C-cCCCeEEEee------------------CCC
Q 009188 241 HNGKYLASSSN-DRSAIIWEVDLNGGVTLKHKLS-GHQKPVSCVSW-S-SDDQQLLTCG------------------VEE 298 (540)
Q Consensus 241 p~g~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~-s-~~~~~l~s~~------------------~dg 298 (540)
+||++++.... ++.|.+.|+++. +....+. .....+..+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~---~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCc---eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48888887665 456999998765 3333222 23345888898 5 8999998884 245
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC--------------------------------------
Q 009188 299 AVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-------------------------------------- 340 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------------------------------------- 340 (540)
.+.+.|..+.+....+.... ....++++|+|+++++++.+.
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 79999999999988887544 456778999999999888653
Q ss_pred cEEEEecCC--ceE-EEeeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCc-------------eEEEeecCCce
Q 009188 341 SICMWELGG--KEL-ECWKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREAK-------------VERYIEEDQTI 403 (540)
Q Consensus 341 ~i~iwd~~~--~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~-------------~~~~~~~~~~i 403 (540)
.|.+.|..+ +.. ...... .....++.++|||+++++++ .+.+|.++|..+. ...........
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 366666654 222 111111 12456789999999888776 6788999999865 23344556778
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEEecCC---------ceeeeEeeCCcCCeeEEEe--eeccCCCcEEEEeeC---CCc
Q 009188 404 TSFSLSRDNKFLLVNLLNQEIHLWNIEGE---------VKLVAKYKGHKRSRFVIRS--CFGGLEQAFIASGSE---DSQ 469 (540)
Q Consensus 404 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~s~s~---dg~ 469 (540)
..++|+|+|...++...++.|..||+... ...+.++..+..+...... ...+++|++|+++.. |..
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 99999999955556677999999999761 2567777766553222211 134789999988754 332
Q ss_pred ----------EEEEECCCCc
Q 009188 470 ----------VYIWHRASCD 479 (540)
Q Consensus 470 ----------i~iwd~~~~~ 479 (540)
-.++|+..++
T Consensus 414 ~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSS
T ss_pred ccCCCCCCCcceEEEcCCCc
Confidence 2788886554
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=1.9e-06 Score=92.07 Aligned_cols=278 Identities=8% Similarity=0.074 Sum_probs=176.3
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 009188 234 VWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV 313 (540)
Q Consensus 234 V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 313 (540)
|.++...++|.+.+ |+.++.+..|+...+. ..... ...+...|.++...+++.+.+ ++.++-+..||..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~-~~~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKT-FEKVI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCC-EEECC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCe-EEEec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 88999888886544 6655458888865432 11110 112356789998888776555 44444489999887765443
Q ss_pred eec-------CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeecc-------ccceEEEEEEccCCCEEEEEe
Q 009188 314 YEK-------AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQ-------RTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 314 ~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~ 379 (540)
... ....|.++...++|... .|+.+ -|.+||..+......... ....|.++..+++|. +..|+
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt 327 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGT 327 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEE
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEE
Confidence 222 13569999988888644 45555 588999887776654321 235799999999887 55677
Q ss_pred cCCeEEEEECCCceEEEee--------cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc------CC
Q 009188 380 KESALLLLDREAKVERYIE--------EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK------RS 445 (540)
Q Consensus 380 ~d~~i~~~d~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~ 445 (540)
.++-|..++..+....... ....|.++..+++|++ .+|+.++.|..||..+. . ...+.... -.
T Consensus 328 ~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIG 404 (795)
T ss_dssp SSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTC-C-EEEECCC------CCS
T ss_pred CCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCC
Confidence 7778888887665422221 2456889999888874 45777778999997754 2 22221110 00
Q ss_pred eeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeec----CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 446 RFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALP----GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 446 ~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
...+.......++.+|..|+.++-|..||..+++...... .+...|.++...+++. +.+. +. +-|.+|+..++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwig-t~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLG-TL-SALVRFNPEQR 481 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEE-ES-SCEEEEETTTT
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEE-ec-CceeEEeCCCC
Confidence 1123333335677756677877779999988876543221 1346799999988875 4444 44 45888998876
Q ss_pred Ccc
Q 009188 522 NVK 524 (540)
Q Consensus 522 ~~~ 524 (540)
+..
T Consensus 482 ~~~ 484 (795)
T 4a2l_A 482 SFT 484 (795)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=6.7e-07 Score=85.51 Aligned_cols=221 Identities=11% Similarity=0.046 Sum_probs=139.1
Q ss_pred cCCCeEEEe-eCCCcEEEEECCCC----eEEEEee-------cCCCcEEEEEEecCCCEEEEEeCC------CcEEEEec
Q 009188 286 SDDQQLLTC-GVEEAVRRWDVSSG----NCLHVYE-------KAGLGLVSCGWHPDRKWIFSGAND------KSICMWEL 347 (540)
Q Consensus 286 ~~~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~ 347 (540)
+++++|+.. ..++.|.|+|+.+. +..+++. ........+...|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 677777664 46788999999765 6666663 112245667888999 66666555 68999999
Q ss_pred CCceEEEeeccc-c--ceEEEEEEccCCCEEEEEe-------------------cCCeEEEEECCCce-EEEeecC---C
Q 009188 348 GGKELECWKGQR-T--LKISDLEVTSDGKQIITMC-------------------KESALLLLDREAKV-ERYIEED---Q 401 (540)
Q Consensus 348 ~~~~~~~~~~~~-~--~~v~~i~~~~~~~~l~~~~-------------------~d~~i~~~d~~~~~-~~~~~~~---~ 401 (540)
.+.++....... . ..-..+.|+|+++.+++.. .+.+|.+||..+.. ...+... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 887766544322 1 1234588899999888874 37899999998865 2222222 2
Q ss_pred ceeEEEE--cCCCCEEEEEec------CCeEEEEEecCCc-eeeeEe--eCC--cC----------C-eeEEEeeeccCC
Q 009188 402 TITSFSL--SRDNKFLLVNLL------NQEIHLWNIEGEV-KLVAKY--KGH--KR----------S-RFVIRSCFGGLE 457 (540)
Q Consensus 402 ~i~~~~~--s~~~~~l~~~~~------dg~i~i~d~~~~~-~~~~~~--~~~--~~----------~-~~~i~~~~~~~~ 457 (540)
....+.| +|+++++.+++. +++|.+|....+. ...+.+ ... .. . ......+..+++
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445555 999999888774 5678776655421 111111 000 00 0 001122234899
Q ss_pred CcEEEEeeC-CCcEEEEECCC---CceeEeecCCC--------------CCeEEEEeCCCCCCEEEEE
Q 009188 458 QAFIASGSE-DSQVYIWHRAS---CDLIGALPGHS--------------GAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 458 ~~~l~s~s~-dg~i~iwd~~~---~~~~~~~~~h~--------------~~v~~l~~~~~~~~~l~s~ 507 (540)
|++|+++.. .+.|.+||+.. .+.+..+.... +....++++|+|++++++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999988775 67999999853 34455443220 1358899999997544444
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=5.7e-08 Score=100.99 Aligned_cols=277 Identities=9% Similarity=0.025 Sum_probs=166.1
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC----------e-EEEEECcCCCeEEEeeCCCcEEEEECCCCeEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP----------V-SCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL 311 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~----------v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 311 (540)
+..+++++.++.|..+|..++ +.+..+...... + ..+++ .+..++.++.|+.|..+|..+|+.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASG---KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTC---CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCC---hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence 456777777888888888766 333444322110 0 11222 3557888888999999999999999
Q ss_pred EEeecCC----CcEEE-EEEecCCCEEEEEeC------CCcEEEEecCCceEEEeecc---cc-----------------
Q 009188 312 HVYEKAG----LGLVS-CGWHPDRKWIFSGAN------DKSICMWELGGKELECWKGQ---RT----------------- 360 (540)
Q Consensus 312 ~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~---~~----------------- 360 (540)
..+.... ..+.+ ... .+..++++.. +|.|..+|..+++..-.... ..
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 8876531 11111 011 1335555543 58999999987766533211 00
Q ss_pred -----------ceEEEEEEccCCCEEEEEecCC-------------------eEEEEECCCceEEEeec----C------
Q 009188 361 -----------LKISDLEVTSDGKQIITMCKES-------------------ALLLLDREAKVERYIEE----D------ 400 (540)
Q Consensus 361 -----------~~v~~i~~~~~~~~l~~~~~d~-------------------~i~~~d~~~~~~~~~~~----~------ 400 (540)
.....++++++...++.++.++ .|..+|..++....... .
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 0112467888888888887766 39999998877433221 1
Q ss_pred -CceeEEEEcCCCC---EEEEEecCCeEEEEEecCCceeeeEeeCCcC-CeeE--------E------------Ee----
Q 009188 401 -QTITSFSLSRDNK---FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR-SRFV--------I------------RS---- 451 (540)
Q Consensus 401 -~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~--------i------------~~---- 451 (540)
.+.....+..+|+ .+++++.+|.++++|..++ +++........ .... + ..
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 2233333334664 6888999999999998887 44422211110 0000 0 00
Q ss_pred --------eeccCCCcEEEE------------------------------------eeCCCcEEEEECCCCceeEeecCC
Q 009188 452 --------CFGGLEQAFIAS------------------------------------GSEDSQVYIWHRASCDLIGALPGH 487 (540)
Q Consensus 452 --------~~~~~~~~~l~s------------------------------------~s~dg~i~iwd~~~~~~~~~~~~h 487 (540)
..++|+..+++. ...+|.|+.||..+++.+-....+
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 111333333332 123488999999999988776533
Q ss_pred CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccC
Q 009188 488 SGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCH 529 (540)
Q Consensus 488 ~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~ 529 (540)
. ++....+...+. +++.++.||.|+.||.++++.......
T Consensus 458 ~-~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 458 T-HWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp S-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred C-CCcCceeEeCCC-EEEEECCcccchhhhhhcChhheEecC
Confidence 2 233223333454 888899999999999999998866433
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.95 E-value=5.5e-06 Score=88.42 Aligned_cols=278 Identities=9% Similarity=0.122 Sum_probs=178.1
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec----CCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS----GHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
...|.++...++|. |..|+.++-|..|+..... ........ -....|.++...++|.+. .|+.++-|..|+..
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPI 385 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS-SEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTT
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCC
Confidence 35799999998886 5667777778888765331 11111100 124569999998887644 46777679999988
Q ss_pred CCeEEEEeec--------CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec----cccceEEEEEEccCCCE
Q 009188 307 SGNCLHVYEK--------AGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG----QRTLKISDLEVTSDGKQ 374 (540)
Q Consensus 307 ~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~~~~ 374 (540)
+++....... ....|.++...++++.|.+|+.++.|..||..++....+.. .....|.++...++|..
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l 465 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL 465 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence 7765443211 23578999988888757778887789999998777665543 22347899999888875
Q ss_pred EEEEecCCeEEEEECCCceEEEeec--------CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeC----C
Q 009188 375 IITMCKESALLLLDREAKVERYIEE--------DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKG----H 442 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~ 442 (540)
.+. +. +-+.+||..+........ ...|.++..+++|+..+... +.+..||..+. .. .+.. .
T Consensus 466 wig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~-~~--~~~~~~~~~ 538 (795)
T 4a2l_A 466 WLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL-DI--QKASILPVS 538 (795)
T ss_dssp EEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT-EE--EECCCSCSC
T ss_pred EEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC-eE--EEecCCCCC
Confidence 554 44 458889988766433322 35688999998888666544 56888998765 33 2221 0
Q ss_pred cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee--cC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 443 KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL--PG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 443 ~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.-....+......++|.+.++ +.. -|..||..+++...-- .+ ....|.++...++|. +.+++ . +-|..|+.+
T Consensus 539 ~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~-lWi~t-~-~Gl~~~~~~ 613 (795)
T 4a2l_A 539 NVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGR-LWLST-N-RGISCFNPE 613 (795)
T ss_dssp GGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSC-EEEEE-T-TEEEEEETT
T ss_pred CCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCC-EEEEc-C-CceEEEcCC
Confidence 111112333343667775544 334 5888998776543211 12 234689999988885 55544 3 457778877
Q ss_pred CCCc
Q 009188 520 DLNV 523 (540)
Q Consensus 520 ~~~~ 523 (540)
+++.
T Consensus 614 ~~~~ 617 (795)
T 4a2l_A 614 TEKF 617 (795)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 6554
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.93 E-value=2.3e-07 Score=83.28 Aligned_cols=208 Identities=11% Similarity=0.022 Sum_probs=136.2
Q ss_pred eEEEEeecCC-CcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEeecccc-ceEEEEEEccCCCEEEE-EecCCe
Q 009188 309 NCLHVYEKAG-LGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECWKGQRT-LKISDLEVTSDGKQIIT-MCKESA 383 (540)
Q Consensus 309 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~-~~~d~~ 383 (540)
+.+.++.... .....+.|++++..+++.+. ++.|.++|+.+++......... .....+++. +..++. ...++.
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 4455563322 23578999998644444443 5799999998877765543211 123345554 445554 447889
Q ss_pred EEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC--Ce-eEEEeeeccCCCc
Q 009188 384 LLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR--SR-FVIRSCFGGLEQA 459 (540)
Q Consensus 384 i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~-~~i~~~~~~~~~~ 459 (540)
+.++|..+.. ...+... ......++++|+.++++..++.|.++|..+. +....+..... +. ......+ . ++.
T Consensus 88 v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~-~-dg~ 163 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEY-I-NGE 163 (266)
T ss_dssp EEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEE-E-TTE
T ss_pred EEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEE-E-CCE
Confidence 9999998865 3333322 1223446678887887778899999999886 55555543221 11 1111222 3 566
Q ss_pred EEEEeeCCCcEEEEECCCCceeEeecCC-------------CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 460 FIASGSEDSQVYIWHRASCDLIGALPGH-------------SGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
..+....++.|.+.|..+++.+..+.-. ....+.++|+|++.++++++...+.|.+-++....
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 5565556889999999999998887631 13568999999998889999899999999887643
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.90 E-value=8.3e-07 Score=83.64 Aligned_cols=234 Identities=12% Similarity=-0.005 Sum_probs=145.1
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecC-----------------CCCCeEEEEECc-CCCeEEE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG-----------------HQKPVSCVSWSS-DDQQLLT 293 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-----------------h~~~v~~l~~s~-~~~~l~s 293 (540)
....+++|+++|++++++..++.|..|+...+ .......... ....+..+++.+ +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS-GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTT-CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC-ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 44567889999998888888899999976532 2222111000 013578999997 555 444
Q ss_pred eeCCCcEEEEECCCCeEEEEeec-----CCCcEEEEEEec-CCCEEEEEeC-----------------CCcEEEEecCCc
Q 009188 294 CGVEEAVRRWDVSSGNCLHVYEK-----AGLGLVSCGWHP-DRKWIFSGAN-----------------DKSICMWELGGK 350 (540)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~ 350 (540)
+...+.|..+|..++... .+.. .......+++.+ +|+..++... +|.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 544455888887665432 2211 113467899999 8876665432 367888998766
Q ss_pred eEEEeeccccceEEEEEEccCCCEEEEE-ecCCeEEEEECCCc---e-EEEeecCCceeEEEEcCCCCEEEEEec-----
Q 009188 351 ELECWKGQRTLKISDLEVTSDGKQIITM-CKESALLLLDREAK---V-ERYIEEDQTITSFSLSRDNKFLLVNLL----- 420 (540)
Q Consensus 351 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~d~~i~~~d~~~~---~-~~~~~~~~~i~~~~~s~~~~~l~~~~~----- 420 (540)
........ ......++++++++.++++ ...+.|.+++..+. . .......+ ...++++++|+++++...
T Consensus 176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 65443221 1245679999999976665 45689999998752 1 22222233 788999999987776654
Q ss_pred -----CCeEEEEEecCCceeeeEeeCCcC----CeeEEEeeeccCCCcEEEEeeCCCcEEEEECC
Q 009188 421 -----NQEIHLWNIEGEVKLVAKYKGHKR----SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRA 476 (540)
Q Consensus 421 -----dg~i~i~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~ 476 (540)
.+.|..+|... +.+..+..... ....+ ++ .++.++++...++.|..+++.
T Consensus 254 ~~~~~~~~v~~~d~~G--~~~~~~~~~~g~~~~~~~~~--~~--~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEFG--NILEVIPLPPPFAGEHFEQI--QE--HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTSCEEEEEEEECTTS--CEEEEEECCTTTTTSCCCEE--EE--ETTEEEEECSSCSEEEEEEC-
T ss_pred ccCCCccEEEEECCCC--CEEEEEECCCCCccccceEE--EE--eCCEEEEeecCCCceEEEecc
Confidence 45677777643 45555543321 11222 12 356666666677788888765
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.90 E-value=2.8e-06 Score=77.59 Aligned_cols=204 Identities=7% Similarity=-0.030 Sum_probs=131.1
Q ss_pred CcEEEEEEecCCCeEEEE-eCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEEEEECCCCe
Q 009188 232 DEVWFLQFSHNGKYLASS-SNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVRRWDVSSGN 309 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~ 309 (540)
..+..++|+|++..|+.+ ..++.|..++.+.... .............+++++++..|+.+ ...+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 457899999976666554 4567899998864321 12222333568999999976555544 456789999986543
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeC---CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEE
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGAN---DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESALL 385 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~ 385 (540)
..............++++|++..|+.+.. .+.|..+++++................+++++++..++.+. ..+.|.
T Consensus 113 ~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 22222222246789999997666666654 36888888876544333323334688999999877766555 567899
Q ss_pred EEECCCceE-EEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee
Q 009188 386 LLDREAKVE-RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK 440 (540)
Q Consensus 386 ~~d~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 440 (540)
++|..+... ...........++.. .+..+++...++.|..+|..++ +.+..+.
T Consensus 193 ~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g-~~~~~i~ 246 (267)
T 1npe_A 193 CLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS-KEMDTFH 246 (267)
T ss_dssp EEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT-EEEEEEC
T ss_pred EEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC-CceEEEc
Confidence 999987542 222333345566664 3444444445689999998776 5555554
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=1.2e-06 Score=78.63 Aligned_cols=201 Identities=10% Similarity=0.100 Sum_probs=131.6
Q ss_pred ceEEecccCcC--cEEEEEEecCCCeEEEEeC--CCcEEEEEeecCCceEEEEEec-CCCCCeEEEEECcCCCeEEEeeC
Q 009188 222 RTLQILQGHTD--EVWFLQFSHNGKYLASSSN--DRSAIIWEVDLNGGVTLKHKLS-GHQKPVSCVSWSSDDQQLLTCGV 296 (540)
Q Consensus 222 ~~~~~l~~h~~--~V~~~~~sp~g~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~ 296 (540)
+.+..+. |.. ....++|+|++.+.++.+. ++.|.+.|..++. ....+. +.......+++.. +...++.-.
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~---v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~ 84 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK---VENIHKMDDSYFGEGLTLLN-EKLYQVVWL 84 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC---EEEEEECCTTCCEEEEEEET-TEEEEEETT
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC---EEEEEecCCCcceEEEEEeC-CEEEEEEec
Confidence 4455553 443 3689999998754444443 5789999998763 333332 1222233455542 334444456
Q ss_pred CCcEEEEECCCCeEEEEeecC-CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc-----cceEEEEEEcc
Q 009188 297 EEAVRRWDVSSGNCLHVYEKA-GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR-----TLKISDLEVTS 370 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~i~~~~ 370 (540)
++.+.++|..+++.+..+... ... ..+++|++.++++..++.|.++|..+.+........ ...++.+.+.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 889999999999999988644 222 335668888888878889999999886554433221 1136678887
Q ss_pred CCCEEEEEecCCeEEEEECCCce-EEEeecC--------------CceeEEEEcCCCCEEEE-EecCCeEEEEEecC
Q 009188 371 DGKQIITMCKESALLLLDREAKV-ERYIEED--------------QTITSFSLSRDNKFLLV-NLLNQEIHLWNIEG 431 (540)
Q Consensus 371 ~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~--------------~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~ 431 (540)
+|..++....++.|.+.|..+.. ...+... ...+.++++|+++.+++ +...+.+...++..
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 67655555568899999998876 2332211 35689999999865555 55678888888764
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.81 E-value=2.2e-05 Score=73.19 Aligned_cols=231 Identities=8% Similarity=-0.011 Sum_probs=138.8
Q ss_pred EEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC--cEEEE
Q 009188 268 LKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK--SICMW 345 (540)
Q Consensus 268 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw 345 (540)
....+... .....++|+++++++++-..++.|..||... +....+. .......+++.++++.+++..... .|..+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 34444332 4578899999998777766788999999765 4333333 345788999999998655554332 47777
Q ss_pred ecCCceEEEeecc-ccceEEEEEEccCCCEEEEEecCCeEEEEECCCceEEEe------------ecCCceeEEEEcCCC
Q 009188 346 ELGGKELECWKGQ-RTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI------------EEDQTITSFSLSRDN 412 (540)
Q Consensus 346 d~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~------------~~~~~i~~~~~s~~~ 412 (540)
|..++.+...... .......++..+++..+++-..++.|+++|..+...... ......+.+ ++++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 7766655443321 122334555555554444444688999999876431110 011234455 7888
Q ss_pred CEEEEEe-cCCeEEEEEecCCcee--eeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCcee--EeecCC
Q 009188 413 KFLLVNL-LNQEIHLWNIEGEVKL--VAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLI--GALPGH 487 (540)
Q Consensus 413 ~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~h 487 (540)
+.++++. ..+.|..|++...... ...+.....+ ..+ ...++|+++++....+.|.++|.. ++.. ..+...
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-~gi---~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-DDF---AFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-SSE---EEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-CCe---EECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence 7665554 5778999998742111 1111110000 012 226788888877778899999975 6653 234433
Q ss_pred CCCeEEEEeC---CCCCCEEEEEe
Q 009188 488 SGAVNCVSWN---PANPHMLASAS 508 (540)
Q Consensus 488 ~~~v~~l~~~---~~~~~~l~s~~ 508 (540)
....++++|. |++..++++..
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cCCceEEEEecccCCCCEEEEECC
Confidence 4568999998 78764555554
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.81 E-value=1.3e-05 Score=74.81 Aligned_cols=205 Identities=11% Similarity=0.099 Sum_probs=127.4
Q ss_pred CCcceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 219 IPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 219 ~~~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
.+.+.+..+..+ .....++|+|+|+++++-..++.|..||.+. ....... ....+..+++.++|+++++.....
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~~---~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHAT---VEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEEE---CSSEEEEEEECTTSCEEEEEECTT
T ss_pred CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEEe---CCCCceeEEEcCCCcEEEEeccCC
Confidence 334455555433 5678999999999777766788888887652 2222222 234688999999999666554332
Q ss_pred --cEEEEECCCCeEEEEeecC-CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEe--e--------ccccceEEE
Q 009188 299 --AVRRWDVSSGNCLHVYEKA-GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECW--K--------GQRTLKISD 365 (540)
Q Consensus 299 --~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~--------~~~~~~v~~ 365 (540)
.|..+|..+++........ ......++..+++..+++-..++.|.++|..++..... . .........
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 4777787788764433221 22234455555554444444588999999875422111 0 011123455
Q ss_pred EEEccCCCEEEEEe-cCCeEEEEECCC-ce---EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 366 LEVTSDGKQIITMC-KESALLLLDREA-KV---ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 366 i~~~~~~~~l~~~~-~d~~i~~~d~~~-~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
+ +++++.++++. ..+.|..++... .. ............++++++|+++++....+.|.++|...
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 5 78887666554 567899999864 21 11222224567899999998877777788999999764
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=1.5e-06 Score=88.39 Aligned_cols=281 Identities=10% Similarity=-0.014 Sum_probs=160.5
Q ss_pred CCeEEEEeC-CCcEEEEEe-ecCCceEEEEEecCCCC-----------CeEEEEECcCCCe----EEEeeCCCcEEEEEC
Q 009188 243 GKYLASSSN-DRSAIIWEV-DLNGGVTLKHKLSGHQK-----------PVSCVSWSSDDQQ----LLTCGVEEAVRRWDV 305 (540)
Q Consensus 243 g~~l~tg~~-dg~i~iwd~-~~~~~~~~~~~~~~h~~-----------~v~~l~~s~~~~~----l~s~~~dg~i~iwd~ 305 (540)
+..+++++. ++.|.-+|. .++. .+..+..... ....++++|.+.. ++.++.|+.+..+|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~---~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGT---ILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTS---EEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCc---EEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence 445666666 788888888 6552 3333322211 0123455444444 888888999999999
Q ss_pred CCCeEEEEeecCCC----cEEE-EEEecCCCEEEEEe------CCCcEEEEecCCceEEEeeccccce------------
Q 009188 306 SSGNCLHVYEKAGL----GLVS-CGWHPDRKWIFSGA------NDKSICMWELGGKELECWKGQRTLK------------ 362 (540)
Q Consensus 306 ~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~------------ 362 (540)
.+|+.+........ .+.+ -.. .++ .+++++ .+|.|+.+|..+++..-........
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 99999887654321 1111 111 134 556555 3789999999877654322111000
Q ss_pred -------------------------E-EEEEEccCCCEEEEEecC----------------CeEEEEECCCceEEEeecC
Q 009188 363 -------------------------I-SDLEVTSDGKQIITMCKE----------------SALLLLDREAKVERYIEED 400 (540)
Q Consensus 363 -------------------------v-~~i~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~ 400 (540)
+ ..+++.+....++.++.+ +.|..+|..++........
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 0 134566777788877765 3799999998774332211
Q ss_pred C-----------ceeEEEEc-CCC---CEEEEEecCCeEEEEEecCCceeeeEeeCCc-----------CCee-------
Q 009188 401 Q-----------TITSFSLS-RDN---KFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-----------RSRF------- 447 (540)
Q Consensus 401 ~-----------~i~~~~~s-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~~~------- 447 (540)
. ...-+... .+| ..++.++.+|.++++|.+++ +++....... ....
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC-CEeecccccCCcccccccccCCCceeeccccC
Confidence 0 11112222 467 56777889999999999877 4443332110 0000
Q ss_pred -------EEE-----------eeeccCCCcEEEEe---------------------------------e------CCCcE
Q 009188 448 -------VIR-----------SCFGGLEQAFIASG---------------------------------S------EDSQV 470 (540)
Q Consensus 448 -------~i~-----------~~~~~~~~~~l~s~---------------------------------s------~dg~i 470 (540)
.+. ...++|+..++++. + .+|.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 000 00012222222221 1 45789
Q ss_pred EEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCC
Q 009188 471 YIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSN 531 (540)
Q Consensus 471 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~ 531 (540)
..||+.+++.+-+... ..++.+-.....+. +++.++.||.|+.||.++|+.+.+...+.
T Consensus 456 ~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 456 KAYNAITGDYKWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EEECTTTCCEEEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEECCCCCEEeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 9999999998866642 11211111111343 77789999999999999999887654433
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.78 E-value=8.7e-07 Score=78.46 Aligned_cols=191 Identities=9% Similarity=0.071 Sum_probs=120.8
Q ss_pred EEEEeecCCC--cEEEEEEecCCCEEEEEeCCC--cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeE
Q 009188 310 CLHVYEKAGL--GLVSCGWHPDRKWIFSGANDK--SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESAL 384 (540)
Q Consensus 310 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i 384 (540)
.+.++ .|+. -...+.|+ ++..+.+++.+| .|+.+|+.+++......... ......+.+++..+.... .++.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 45566 4433 34678888 666666777666 89999999877765443322 222222333455555554 68899
Q ss_pred EEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC--CeeEEEeeeccCCCcEE
Q 009188 385 LLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR--SRFVIRSCFGGLEQAFI 461 (540)
Q Consensus 385 ~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l 461 (540)
.++|..+.. ...+.... ....++++++.|+.+..++.|.++|..+. +....+..... +...+.-..+. +|.+.
T Consensus 110 ~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 999998865 33333333 22344467777777777888999999876 55555544221 11111111112 66666
Q ss_pred EEeeCCCcEEEEECCCCceeEeecCC------------CCCeEEEEeCCCCCCEEEEE
Q 009188 462 ASGSEDSQVYIWHRASCDLIGALPGH------------SGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 462 ~s~s~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~l~~~~~~~~~l~s~ 507 (540)
+..-.++.|.+.|..+++.+..+.-. ....+.|+|+|++..+++||
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 66656889999999999998877531 23568999999987666665
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=1.5e-06 Score=90.20 Aligned_cols=257 Identities=13% Similarity=0.141 Sum_probs=155.1
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC-CCeEEEEECc--CCCeEEEeeC------CCcEEEEECCCCeEEEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ-KPVSCVSWSS--DDQQLLTCGV------EEAVRRWDVSSGNCLHV 313 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~ 313 (540)
+..++.++.|+.+..+|..++. .+..+.... .....+.-+| .+..++++.. +|.|..+|..+|+.+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~---~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGK---AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCC---EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCC---EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 4578888889999999987763 333332211 0000000111 1334555433 58999999999999988
Q ss_pred eecCC---C----------------------------cEEEEEEecCCCEEEEEeCCC-------------------cEE
Q 009188 314 YEKAG---L----------------------------GLVSCGWHPDRKWIFSGANDK-------------------SIC 343 (540)
Q Consensus 314 ~~~~~---~----------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~ 343 (540)
+.... . ....++++++...++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 75321 0 012367888888888888776 399
Q ss_pred EEecCCceEEEeecc--cc-------ceEEEEEEccCCC---EEEEEecCCeEEEEECCCceEEEeecC-----------
Q 009188 344 MWELGGKELECWKGQ--RT-------LKISDLEVTSDGK---QIITMCKESALLLLDREAKVERYIEED----------- 400 (540)
Q Consensus 344 iwd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~----------- 400 (540)
.+|.++++..-.... +. .+.....+..+|+ .++.++.+|.++++|..++........
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 999988776543322 11 2233333344665 688889999999999988763311000
Q ss_pred ---Cc------------------------eeEEEEcCCCCEEEEEe----------------------------------
Q 009188 401 ---QT------------------------ITSFSLSRDNKFLLVNL---------------------------------- 419 (540)
Q Consensus 401 ---~~------------------------i~~~~~s~~~~~l~~~~---------------------------------- 419 (540)
.+ -..++++|+...+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 01267888777666532
Q ss_pred --cCCeEEEEEecCCceeeeEeeCCcCCe-eEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCe-EEEE
Q 009188 420 --LNQEIHLWNIEGEVKLVAKYKGHKRSR-FVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAV-NCVS 495 (540)
Q Consensus 420 --~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~ 495 (540)
.+|.|..||..++ +.+-......... ..+ ...+.+++.++.||.++.||..+|+.+..+....+.. .-+.
T Consensus 434 ~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~~~~-----~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~ 507 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ-KAAWKVPYPTHWNGGTL-----STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT 507 (668)
T ss_dssp GGCEEEEEEEETTTT-EEEEEEEESSSCCCCEE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred CCccceEEEEeCCCC-cEEEEccCCCCCcCcee-----EeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE
Confidence 1377999999887 5544443322211 111 2356788889999999999999999998886543211 1233
Q ss_pred eCCCCCCEEEEEe
Q 009188 496 WNPANPHMLASAS 508 (540)
Q Consensus 496 ~~~~~~~~l~s~~ 508 (540)
+..+|..+++.++
T Consensus 508 ~~~~G~~yva~~~ 520 (668)
T 1kv9_A 508 FELAGRQYVAIMA 520 (668)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEe
Confidence 3446654454443
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.77 E-value=1.9e-06 Score=87.60 Aligned_cols=276 Identities=11% Similarity=-0.027 Sum_probs=159.6
Q ss_pred CCeEEEEeC-CCcEEEEEe-ecCCceEEEEEecCCCC----------C-eEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 243 GKYLASSSN-DRSAIIWEV-DLNGGVTLKHKLSGHQK----------P-VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 243 g~~l~tg~~-dg~i~iwd~-~~~~~~~~~~~~~~h~~----------~-v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
+..++.++. ++.|.-+|. .++. .+..+..... . ...++. .+..++.++.|+.+..+|..+|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGK---IVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTS---EEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCcc---EEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 445666666 788888887 6552 3333322111 0 011222 35678888889999999999999
Q ss_pred EEEEeecCCC----cEEE-EEEecCCCEEEEEeC------CCcEEEEecCCceEEEeeccccce----------------
Q 009188 310 CLHVYEKAGL----GLVS-CGWHPDRKWIFSGAN------DKSICMWELGGKELECWKGQRTLK---------------- 362 (540)
Q Consensus 310 ~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~---------------- 362 (540)
.+........ .+.+ ... .+..+++++. +|.|..+|..+++..-........
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 9887654321 1111 111 1345666655 789999999876654322111000
Q ss_pred ----------------------EEEEEEccCCCEEEEEecC----------------CeEEEEECCCceEEEeec----C
Q 009188 363 ----------------------ISDLEVTSDGKQIITMCKE----------------SALLLLDREAKVERYIEE----D 400 (540)
Q Consensus 363 ----------------------v~~i~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~----~ 400 (540)
...++++++...++.++.+ +.|..+|..++....... .
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 0135666766677766532 368999998876333221 1
Q ss_pred -------CceeEEEEcCCCC---EEEEEecCCeEEEEEecCCceeeeEeeCCc-------------CCe-----------
Q 009188 401 -------QTITSFSLSRDNK---FLLVNLLNQEIHLWNIEGEVKLVAKYKGHK-------------RSR----------- 446 (540)
Q Consensus 401 -------~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------~~~----------- 446 (540)
....-+...++|+ .++.++.+|.++++|..++ +.+..+.... .++
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1111122234674 5777888999999998877 4444332211 000
Q ss_pred -eEEE-----------eeeccCCCcEEEEee-------------------------------------CCCcEEEEECCC
Q 009188 447 -FVIR-----------SCFGGLEQAFIASGS-------------------------------------EDSQVYIWHRAS 477 (540)
Q Consensus 447 -~~i~-----------~~~~~~~~~~l~s~s-------------------------------------~dg~i~iwd~~~ 477 (540)
..+. ...++|+..+++..+ .+|.|+.||..+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 0000 011244444554432 357899999999
Q ss_pred CceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcccccc
Q 009188 478 CDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 478 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
++.+-++... ..+.+......+. +++.++.||.|+.||.+++++..+..
T Consensus 454 G~~~W~~~~~-~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 454 GKAKWTKWEK-FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CCEEEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEecCC-CCccceeEEECCC-EEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 9988776532 2222222222343 67778999999999999999886644
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=3e-05 Score=82.56 Aligned_cols=279 Identities=11% Similarity=0.091 Sum_probs=168.7
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEe-----cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKL-----SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 306 (540)
..|.++...++|.+.+ |+.+ -+.+||...+ ........ ......|.++...++|.+. .|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTT-EEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETT
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCC
Confidence 5699999988887554 4444 5888886533 11111100 1124569999988877654 45554568899987
Q ss_pred CCeEEEEee--------------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec---------cccceE
Q 009188 307 SGNCLHVYE--------------KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG---------QRTLKI 363 (540)
Q Consensus 307 ~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v 363 (540)
++....... .....|.++...++|. |-.|+.++-|..++..+.....+.. .....|
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 765432221 1245789998888875 6667767779999987655444321 123468
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCceEEEe-----ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeE
Q 009188 364 SDLEVTSDGKQIITMCKESALLLLDREAKVERYI-----EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAK 438 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 438 (540)
.++...++|. +.+|+.++-+..+|..+...... .....|.++...+++.+.+ |+.++.+..+|..+. . ...
T Consensus 366 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-~-~~~ 441 (781)
T 3v9f_A 366 SSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK-K-FQI 441 (781)
T ss_dssp EEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-E-EEE
T ss_pred EEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-c-EEE
Confidence 9999888776 45667667788899876553321 1345688888888776554 666677888987654 2 222
Q ss_pred eeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCC-----CCCeEEEEeCCCCCCEEEEEeCCCcE
Q 009188 439 YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGH-----SGAVNCVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 439 ~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~~~Dg~i 513 (540)
+.........+......+++.+. .|+. +-|..||..+++........ ...|.++...++|. + ..|+.++-|
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-l-Wigt~~~Gl 517 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-F-WIGTFGGGV 517 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-E-EEEESSSCE
T ss_pred eccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-E-EEEEcCCCE
Confidence 22111111123333335566544 4555 55889998876654332212 46799999998885 4 445554447
Q ss_pred EEecCCCCCc
Q 009188 514 RIWGLKDLNV 523 (540)
Q Consensus 514 ~iw~~~~~~~ 523 (540)
..|+..+++.
T Consensus 518 ~~~~~~~~~~ 527 (781)
T 3v9f_A 518 GIYTPDMQLV 527 (781)
T ss_dssp EEECTTCCEE
T ss_pred EEEeCCCCeE
Confidence 7788876543
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=5.5e-05 Score=80.51 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=172.2
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEE-------e-----cCCCCCeEEEEECcCCCeEEEeeCCC
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHK-------L-----SGHQKPVSCVSWSSDDQQLLTCGVEE 298 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------~-----~~h~~~v~~l~~s~~~~~l~s~~~dg 298 (540)
...|.++...++|. |..|+..+-|.+++..... ...... . .-....|.++...++|. |-.|+.++
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ-FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe-eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence 45799999988886 5556664558888865431 111111 0 11345799999988876 45566667
Q ss_pred cEEEEECCCCeEEEEee---------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee---ccccceEEEE
Q 009188 299 AVRRWDVSSGNCLHVYE---------KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK---GQRTLKISDL 366 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i 366 (540)
-|..++..++....... .....|.++...++|. |..|+.++-|..||..++....+. ......|.++
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 78899887665433211 1235688888887775 556666666899998765544332 1223568899
Q ss_pred EEccCCCEEEEEecCCeEEEEECCCceEEEee----cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCC
Q 009188 367 EVTSDGKQIITMCKESALLLLDREAKVERYIE----EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 367 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
...++|.. .+|+.++-+..+|..+....... ....|.++...+++.+.+ |+. +.+..||..+. .........
T Consensus 413 ~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~-~~~~~~~~~ 488 (781)
T 3v9f_A 413 LKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASK-KVIHHYDTS 488 (781)
T ss_dssp EECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSS-SCCEEECTT
T ss_pred EECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCC-eEEecccCc
Confidence 88887764 44677677899998876644433 246788888888876544 454 66889997764 222211111
Q ss_pred --cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecC---CCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 443 --KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPG---HSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 443 --~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
......+......++|.+.+ |+.++-+..||..+++....... ....|.++...++|. +.+ ++.+|.|..||
T Consensus 489 ~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi-~T~~Glv~~~d 565 (781)
T 3v9f_A 489 NSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQ-MWL-ATGEGLVCFPS 565 (781)
T ss_dssp TSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSC-EEE-EETTEEEEESC
T ss_pred ccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCC-EEE-EECCCceEEEC
Confidence 00011233333366666554 55444478898776654322111 235789999988885 444 44466658899
Q ss_pred CCCCCcc
Q 009188 518 LKDLNVK 524 (540)
Q Consensus 518 ~~~~~~~ 524 (540)
.++++..
T Consensus 566 ~~~~~~~ 572 (781)
T 3v9f_A 566 ARNFDYQ 572 (781)
T ss_dssp TTTCCCE
T ss_pred CCCCcEE
Confidence 8877653
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.73 E-value=5.2e-07 Score=93.88 Aligned_cols=269 Identities=12% Similarity=0.001 Sum_probs=151.0
Q ss_pred EEEEec-CCCeEEEEeCCC-----------cEEEEEeecCCceEEEEEe-cCCCCCeEEEEECcCCCeEEEeeC-CCcEE
Q 009188 236 FLQFSH-NGKYLASSSNDR-----------SAIIWEVDLNGGVTLKHKL-SGHQKPVSCVSWSSDDQQLLTCGV-EEAVR 301 (540)
Q Consensus 236 ~~~~sp-~g~~l~tg~~dg-----------~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~ 301 (540)
.+++.| +|+.++.|+.++ .+.+||..++. ......+ ..+.....++++..++++++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 566777 888888887543 57788876543 2222222 233444556788889999999984 45799
Q ss_pred EEECCCCeEEEEeecCCC-cEEEEEEecCCCEEEEEe-CC-----CcEEEEecCCceEEEeeccc----cceEEEEEEcc
Q 009188 302 RWDVSSGNCLHVYEKAGL-GLVSCGWHPDRKWIFSGA-ND-----KSICMWELGGKELECWKGQR----TLKISDLEVTS 370 (540)
Q Consensus 302 iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~ 370 (540)
+||..+++-...-..... .-.+++..++++.++.|+ .+ ..+.+||..+.......... ...-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999988764433222211 123455667899999888 44 46999999877655431100 00000011224
Q ss_pred CCCEEEEEecCC---------eEEEEECCCceEE-Eeec----------CCceeEEEEc-CCCCEEEEEecCC-------
Q 009188 371 DGKQIITMCKES---------ALLLLDREAKVER-YIEE----------DQTITSFSLS-RDNKFLLVNLLNQ------- 422 (540)
Q Consensus 371 ~~~~l~~~~~d~---------~i~~~d~~~~~~~-~~~~----------~~~i~~~~~s-~~~~~l~~~~~dg------- 422 (540)
++..++.++.+| .+..||..+.... .... ...-.++.+. .+++++++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 455556665443 5677887765411 1111 1122344443 3677888887543
Q ss_pred ----eEEEEEecCCceeeeEe--eCCcCCeeEEEeeeccCCCcEEEEeeCC-----------CcEEEEECCCCceeE--e
Q 009188 423 ----EIHLWNIEGEVKLVAKY--KGHKRSRFVIRSCFGGLEQAFIASGSED-----------SQVYIWHRASCDLIG--A 483 (540)
Q Consensus 423 ----~i~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~--~ 483 (540)
.+.+||..+. .-.... ........ ...+. -+++++++.|+.+ ..+.+||..+.+-.. .
T Consensus 429 ~~~~~v~~yd~~~~-~W~~~~~~~mp~~R~~-~~~~~-l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 429 TNAHIITLGEPGTS-PNTVFASNGLYFARTF-HTSVV-LPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCEEEEECCSTTSC-CEEEECTTCCSSCCBS-CEEEE-CTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcceEEEcCCCCCC-CeeEEccCCCCCCccc-CCeEE-CCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 5777877654 221111 11111111 11111 4688999998864 468999987755322 2
Q ss_pred ecCCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 484 LPGHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 484 ~~~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
+...........+.|++. +++.||.
T Consensus 506 ~~~~R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred CCCccccccHhhcCCCcE-EEecCCC
Confidence 221222233445678885 8888885
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.72 E-value=1.7e-05 Score=75.31 Aligned_cols=253 Identities=8% Similarity=-0.033 Sum_probs=152.2
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEEEEECCCCeE
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVRRWDVSSGNC 310 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~ 310 (540)
+..+|.+..+++ +|+.+.. ..|+..+++.. . ..... .....+..++|++.+..|+.+ ...+.|..+++..+..
T Consensus 34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~-~--~~~~~-~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRS-E--YTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TSSCEEESSSCC-EEEEECB-SCEEEECTTSC-C--EEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccccccCc-eeEeecc-cceEEEeCCCC-e--eEEee-cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 344566666633 4444433 45766666532 1 22222 233458899999766655554 4567899999877654
Q ss_pred EEEeecCCCcEEEEEEecCCCEEE-EEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cC-CeEEEE
Q 009188 311 LHVYEKAGLGLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KE-SALLLL 387 (540)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d-~~i~~~ 387 (540)
.............+++.+.+..|+ +-...+.|.+.++++................++++|.+..++... .. +.|..+
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 444433334557889998555554 445567899999987654444444445689999998666655544 44 789999
Q ss_pred ECCCceEEEe--ecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEe
Q 009188 388 DREAKVERYI--EEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASG 464 (540)
Q Consensus 388 d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 464 (540)
+......... ......+.++++|++..|..+. ..+.|..+|+.+... ...+.........+.. ..+.++++-
T Consensus 188 ~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav----~~~~ly~td 262 (349)
T 3v64_C 188 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV----FEDSLYWTD 262 (349)
T ss_dssp ETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEE----ETTEEEEEE
T ss_pred eCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEE----ECCEEEEec
Confidence 8877553332 2344578999998776665554 567899999876422 2222222222233333 245566666
Q ss_pred eCCCcEEEEECCCCceeEeecCCCCCeEEEE
Q 009188 465 SEDSQVYIWHRASCDLIGALPGHSGAVNCVS 495 (540)
Q Consensus 465 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 495 (540)
...+.|..+|..+|+....+........+++
T Consensus 263 ~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 263 WHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp TTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 6677888888767776665543333333443
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.71 E-value=5.5e-06 Score=84.20 Aligned_cols=261 Identities=13% Similarity=0.110 Sum_probs=151.4
Q ss_pred EEEecCCCe----EEEEeCCCcEEEEEeecCCceEEEEEecCCC--CCeEE-EEECcCCCeEEEee------CCCcEEEE
Q 009188 237 LQFSHNGKY----LASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ--KPVSC-VSWSSDDQQLLTCG------VEEAVRRW 303 (540)
Q Consensus 237 ~~~sp~g~~----l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~-l~~s~~~~~l~s~~------~dg~i~iw 303 (540)
++++|.+.. |+.++.|+.+..+|..++... -......+. ..+.+ ... .++ .+++++ .++.|+.+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~-W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETV-WKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE-EEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEE-EeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEE
Confidence 445444444 888888999999998766322 111221110 01111 011 144 455554 37999999
Q ss_pred ECCCCeEEEEeecCCCc-------------------------------------E-EEEEEecCCCEEEEEeCCC-----
Q 009188 304 DVSSGNCLHVYEKAGLG-------------------------------------L-VSCGWHPDRKWIFSGANDK----- 340 (540)
Q Consensus 304 d~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~dg----- 340 (540)
|..+|+.+..+...... + ..+++.++...++.+..++
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999998887643221 0 1345667777888777653
Q ss_pred -----------cEEEEecCCceEEEeecccc----------ceEEEEEEc-cCC---CEEEEEecCCeEEEEECCCceEE
Q 009188 341 -----------SICMWELGGKELECWKGQRT----------LKISDLEVT-SDG---KQIITMCKESALLLLDREAKVER 395 (540)
Q Consensus 341 -----------~i~iwd~~~~~~~~~~~~~~----------~~v~~i~~~-~~~---~~l~~~~~d~~i~~~d~~~~~~~ 395 (540)
.|..+|.++++..-...... .++. +... .+| ..++.++.+|.++++|..++...
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 79999998877654332211 1121 2222 467 46777889999999999887632
Q ss_pred EeecC---------------Cce--------------------------eEEEEcCCCCEEEEEe---------------
Q 009188 396 YIEED---------------QTI--------------------------TSFSLSRDNKFLLVNL--------------- 419 (540)
Q Consensus 396 ~~~~~---------------~~i--------------------------~~~~~s~~~~~l~~~~--------------- 419 (540)
..... .++ ..++++|+..++++..
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 21110 011 2466777776665542
Q ss_pred ------------------------cCCeEEEEEecCCceeeeEee-CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 420 ------------------------LNQEIHLWNIEGEVKLVAKYK-GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 420 ------------------------~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
..|.+.-||+.++ +.+-... ........+ ...+.+++.++.||.++.||
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~~~g~~-----~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-DYKWEKMERFAVWGGTM-----ATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-CEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEEEE
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCC-CEEeEecCCCCccCcce-----EecCCEEEEECCCCeEEEEE
Confidence 2356777777766 3333332 111100001 12456777899999999999
Q ss_pred CCCCceeEeecCCCCCe-EEEEeCCCCCCEEEEE
Q 009188 475 RASCDLIGALPGHSGAV-NCVSWNPANPHMLASA 507 (540)
Q Consensus 475 ~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~ 507 (540)
.++|+.+.+++-..+.+ .-+.+..+|.+++++.
T Consensus 501 ~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 501 SDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 99999998776432211 2244556776555543
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.71 E-value=1.2e-05 Score=81.77 Aligned_cols=282 Identities=9% Similarity=0.009 Sum_probs=158.3
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCC---------eEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKP---------VSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV 313 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~---------v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 313 (540)
+..++.++.++.|.-+|..++. .+..+...... ...++. .+..++.++.++.|..+|..+|+.+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~---~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGK---RLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCC---EEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCc---EEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEee
Confidence 3345555554448888877653 33333322110 011222 355778888999999999999999887
Q ss_pred eecCCC----cEE-EEEEec---CCC-EEEEEe------CCCcEEEEecCCceEEEeeccccce----------------
Q 009188 314 YEKAGL----GLV-SCGWHP---DRK-WIFSGA------NDKSICMWELGGKELECWKGQRTLK---------------- 362 (540)
Q Consensus 314 ~~~~~~----~v~-~~~~~~---~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------- 362 (540)
...... .+. .-.... +++ .+++++ .+|.|..+|..+++..-........
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 764321 111 011111 233 566654 3789999999876654322111000
Q ss_pred -------------------------EEEEEEccCCCEEEEEec--------------------C----CeEEEEECCCce
Q 009188 363 -------------------------ISDLEVTSDGKQIITMCK--------------------E----SALLLLDREAKV 393 (540)
Q Consensus 363 -------------------------v~~i~~~~~~~~l~~~~~--------------------d----~~i~~~d~~~~~ 393 (540)
-..++++++...++.+.. | +.|..+|..++.
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 013456677777776663 2 589999998877
Q ss_pred EEEee----cC-------CceeEEEEc-CCCC---EEEEEecCCeEEEEEecCCceeeeEeeCCcC------------C-
Q 009188 394 ERYIE----ED-------QTITSFSLS-RDNK---FLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR------------S- 445 (540)
Q Consensus 394 ~~~~~----~~-------~~i~~~~~s-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~- 445 (540)
..... +. ....-+... .+|+ .++.++.+|.++++|..++ +++..+..... .
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG-KLQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSSCCCSEEEECTTTCCE
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC-CEecccccccCccccccccccCCCE
Confidence 43332 11 011112222 4663 7888999999999998877 44433332210 0
Q ss_pred -----------------eeEEEee------------eccCCCcEEEEee-------------------------------
Q 009188 446 -----------------RFVIRSC------------FGGLEQAFIASGS------------------------------- 465 (540)
Q Consensus 446 -----------------~~~i~~~------------~~~~~~~~l~s~s------------------------------- 465 (540)
......+ .++|+..++++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 0000000 0122222333221
Q ss_pred --CCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccccccCCCc
Q 009188 466 --EDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKRKDCHSNG 532 (540)
Q Consensus 466 --~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~ 532 (540)
.+|.|+.||..+++.+-+...+. ++..-.....+. +++.++.||.++.||.++|+.+.+...+.+
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 36889999999999886665322 221111111243 788899999999999999999876544443
No 260
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.70 E-value=2.2e-08 Score=70.67 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHHHHhhcChHHHHHHHHHhcCCccc
Q 009188 19 VIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLH 54 (540)
Q Consensus 19 ~~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~ 54 (540)
.++++||++||++||+|.||.+||.+|++||+|...
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~ 37 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS 37 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence 478999999999999999999999999999998765
No 261
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=6e-06 Score=80.84 Aligned_cols=238 Identities=10% Similarity=0.096 Sum_probs=143.3
Q ss_pred CeEEEEECc-CCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-C----cEEEEecCCce
Q 009188 278 PVSCVSWSS-DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND-K----SICMWELGGKE 351 (540)
Q Consensus 278 ~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~iwd~~~~~ 351 (540)
....|+++| ++..|..+...+.|+.+|+.++...... ........++|+++++.|+++... + .+..++..+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889998 4556666655588999998777654443 455568899999999977766542 2 34444443221
Q ss_pred E--EEeeccccceEEEEEEcc-CCCEEEEEecCCeEEEEECCCceE-EEee--cCCceeEEEEcCCCCEEEEE-ecCCeE
Q 009188 352 L--ECWKGQRTLKISDLEVTS-DGKQIITMCKESALLLLDREAKVE-RYIE--EDQTITSFSLSRDNKFLLVN-LLNQEI 424 (540)
Q Consensus 352 ~--~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~--~~~~i~~~~~s~~~~~l~~~-~~dg~i 424 (540)
. .... .......++++| ++..+++-..++.|..++..+... .... .......++|+|++++|+++ ...+.|
T Consensus 217 ~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 217 KVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp CSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 1 1111 122456788999 677666766788999999987664 2222 22457889999999955554 567889
Q ss_pred EEEEecCCc-ee--eeEeeCC---cCC----------eeEEEeeec--------cCCCcEEEEeeCCCcEEEEECCCCce
Q 009188 425 HLWNIEGEV-KL--VAKYKGH---KRS----------RFVIRSCFG--------GLEQAFIASGSEDSQVYIWHRASCDL 480 (540)
Q Consensus 425 ~i~d~~~~~-~~--~~~~~~~---~~~----------~~~i~~~~~--------~~~~~~l~s~s~dg~i~iwd~~~~~~ 480 (540)
..++..... .. ...+.+. ... ......++. .+++.+.++-...+.|+.++ .+|..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 998876421 11 1122211 000 000001111 13455666666677888888 44543
Q ss_pred eEeecC----C-------------CCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 481 IGALPG----H-------------SGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 481 ~~~~~~----h-------------~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
...... . -.....|+++|++..++++-...+.|+.++++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 322210 0 12578999999543477777777888887754
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=4.7e-06 Score=73.81 Aligned_cols=187 Identities=10% Similarity=0.105 Sum_probs=122.0
Q ss_pred ceEEecccCcCc--EEEEEEecCCCeEEEEeCCC--cEEEEEeecCCceEEEEEecCCCCCeE--EEEECcCCCeEEEe-
Q 009188 222 RTLQILQGHTDE--VWFLQFSHNGKYLASSSNDR--SAIIWEVDLNGGVTLKHKLSGHQKPVS--CVSWSSDDQQLLTC- 294 (540)
Q Consensus 222 ~~~~~l~~h~~~--V~~~~~sp~g~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~--~l~~s~~~~~l~s~- 294 (540)
+.++.+ .|... ...+.|+ ++.+..+++.+| .|+++|+.++. ......-.. ... .+++ ++..|..+
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk---v~~~~~l~~-~~FgeGit~--~g~~ly~lt 103 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK---TLQQIELGK-RYFGEGISD--WKDKIVGLT 103 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC---EEEEEECCT-TCCEEEEEE--ETTEEEEEE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc---EEEEEecCC-ccceeEEEE--eCCEEEEEE
Confidence 445555 35433 4788898 676666666665 89999998763 333333222 222 3444 34444444
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc-----cceEEEEEEc
Q 009188 295 GVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR-----TLKISDLEVT 369 (540)
Q Consensus 295 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~i~~~ 369 (540)
..++.+.+||..+.+.+.++...... .. +.+++..|+.+..++.|.++|..+.+........ ...++.+.+.
T Consensus 104 w~~~~v~v~D~~t~~~~~ti~~~~eG-~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 104 WKNGLGFVWNIRNLRQVRSFNYDGEG-WG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSSCC-CC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred eeCCEEEEEECccCcEEEEEECCCCc-eE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 46889999999999999998764422 23 3457788887777788999999876554433221 1235567776
Q ss_pred cCCCEEEEEecCCeEEEEECCCce-EEEeec-------------CCceeEEEEcCCCCEEEEEec
Q 009188 370 SDGKQIITMCKESALLLLDREAKV-ERYIEE-------------DQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 370 ~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~ 420 (540)
+|+..+....++.|.+.|..++. ...+.. ....+.++++|+++.|++.+.
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 67666555578899999998876 222221 235689999999887777764
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.68 E-value=4e-06 Score=85.26 Aligned_cols=269 Identities=11% Similarity=0.056 Sum_probs=155.4
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCC--CeEE-EEECcCCCeEEEeeC------CCcEEEEECCCCeEEEE
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQK--PVSC-VSWSSDDQQLLTCGV------EEAVRRWDVSSGNCLHV 313 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~-l~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~ 313 (540)
+..++.++.|+.+..+|..++... -......+.. .+.+ ... .++ .++.++. ++.|..+|..+|+.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~-W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKIN-WEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEE-EEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEE-EEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 557888888999999998766322 1112222110 1110 011 134 4555544 78999999999999887
Q ss_pred eecCCCc-------------------------------------E-EEEEEecCCCEEEEEeCC----------------
Q 009188 314 YEKAGLG-------------------------------------L-VSCGWHPDRKWIFSGAND---------------- 339 (540)
Q Consensus 314 ~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~d---------------- 339 (540)
+...... + ..+++.++...++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 7643211 0 135667766677776542
Q ss_pred CcEEEEecCCceEEEeeccc----------cceEEEEEEccCCC---EEEEEecCCeEEEEECCCceEEEeec-C-----
Q 009188 340 KSICMWELGGKELECWKGQR----------TLKISDLEVTSDGK---QIITMCKESALLLLDREAKVERYIEE-D----- 400 (540)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~----------~~~v~~i~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~-~----- 400 (540)
+.|..+|.++++..-..... ..++ -+....+|+ .++.++.+|.++++|..++....... .
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 25899999887765433211 1112 122334674 56778899999999988866322111 1
Q ss_pred ---------Cce--------------------------eEEEEcCCCCEEEEEec-------------------------
Q 009188 401 ---------QTI--------------------------TSFSLSRDNKFLLVNLL------------------------- 420 (540)
Q Consensus 401 ---------~~i--------------------------~~~~~s~~~~~l~~~~~------------------------- 420 (540)
.++ ..++++|+...+++...
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 24678888777777643
Q ss_pred ------------CCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC
Q 009188 421 ------------NQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS 488 (540)
Q Consensus 421 ------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 488 (540)
+|.+..||..++ +...++....... . ......+..++.++.||.|+.||..+|+.+.++....
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~~~~~~-~---~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTG-KAKWTKWEKFAAW-G---GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTC-CEEEEEEESSCCC-S---BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eccCccccCCCCCCeEEEEECCCC-CEEEEecCCCCcc-c---eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 467888888876 4444433221110 0 0001235667779999999999999999998876432
Q ss_pred CC-eEEEEeCCCCCCEEEEEeCCC----cEEEecCCC
Q 009188 489 GA-VNCVSWNPANPHMLASASDDR----TIRIWGLKD 520 (540)
Q Consensus 489 ~~-v~~l~~~~~~~~~l~s~~~Dg----~i~iw~~~~ 520 (540)
.. -.-+.+..++..++++.+..+ .+..+++.+
T Consensus 506 ~~~~~p~~~~~~G~~yv~~~~G~~g~~~~~~~~~~~~ 542 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTD 542 (571)
T ss_dssp CCCSCCEEEEETTEEEEEEEECCCTTTTHHHHTTCCC
T ss_pred CcEeeeEEEEECCEEEEEEECCCCCccceeEeccccC
Confidence 21 112335567754444443332 234456654
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.67 E-value=8.8e-05 Score=69.31 Aligned_cols=232 Identities=8% Similarity=-0.046 Sum_probs=142.2
Q ss_pred eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEEEEECCC----CeEEEEeecCCC
Q 009188 245 YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVRRWDVSS----GNCLHVYEKAGL 319 (540)
Q Consensus 245 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~~~~ 319 (540)
+|+.+.. ..|+..|++..... ... .....+..++|++.+..|+.+ ...+.|..+++.. ......+...-.
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~---~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYT---SLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCE---EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEEECC-CeEEEEECCCcceE---ehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 3444443 46888887654221 222 234568899999866555544 4568899999875 222222322223
Q ss_pred cEEEEEEecCCCEEE-EEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC--CeEEEEECCCceEEE
Q 009188 320 GLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE--SALLLLDREAKVERY 396 (540)
Q Consensus 320 ~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~ 396 (540)
....+++++.+..|+ +-...+.|.++++.+................++++|.+..++.+... +.|..++........
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 557889987555555 44567889999998765544443333478899999977766655543 689999887655333
Q ss_pred e--ecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeC--CcCCeeEEEeeeccCCCcEEEEeeCCCcEE
Q 009188 397 I--EEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKG--HKRSRFVIRSCFGGLEQAFIASGSEDSQVY 471 (540)
Q Consensus 397 ~--~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~ 471 (540)
. ..-...+.+++++++..|..+. ..+.|..+|+.+... ...... .......+.. . .+.++++-...+.|.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav---~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV---F-EDKVFWTDIINEAIF 232 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEE---E-TTEEEEEETTTTEEE
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEE---E-CCEEEEEECCCCeEE
Confidence 2 2345678999999876666554 567899999875422 111121 1122223332 2 356666666778899
Q ss_pred EEECCCCceeEeecC
Q 009188 472 IWHRASCDLIGALPG 486 (540)
Q Consensus 472 iwd~~~~~~~~~~~~ 486 (540)
.+|..+++.+..+..
T Consensus 233 ~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 233 SANRLTGSDVNLLAE 247 (316)
T ss_dssp EEETTTCCCCEEEEC
T ss_pred EEeCCCCcceEEEec
Confidence 999877776666543
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=1.6e-05 Score=80.89 Aligned_cols=254 Identities=14% Similarity=0.136 Sum_probs=149.7
Q ss_pred CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCC---------CCeEEEEEC-cCCC-eEEEee------CCCcEEEEEC
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQ---------KPVSCVSWS-SDDQ-QLLTCG------VEEAVRRWDV 305 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~---------~~v~~l~~s-~~~~-~l~s~~------~dg~i~iwd~ 305 (540)
+..++.++.|+.+..+|..++. .+....... .++ +.=. .+++ .+++++ .++.|..+|.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~---~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~ 191 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGK---VVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDP 191 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCC---EEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECT
T ss_pred CCEEEEEeCCCEEEEEECCCCC---EEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEEC
Confidence 4568888889999999987763 222222111 111 1100 1233 555554 3789999999
Q ss_pred CCCeEEEEeecCCCcE-----------------------------------------EEEEEecCCCEEEEEeC------
Q 009188 306 SSGNCLHVYEKAGLGL-----------------------------------------VSCGWHPDRKWIFSGAN------ 338 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~l~~~~~------ 338 (540)
.+|+.+.........+ ..++++|+...++.+..
T Consensus 192 ~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~ 271 (582)
T 1flg_A 192 DTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWN 271 (582)
T ss_dssp TTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSC
T ss_pred CCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCccc
Confidence 9999887664321100 12456677777777663
Q ss_pred --------------C----CcEEEEecCCceEEEeecc--cc--------ceEEEEEEc-cCCC---EEEEEecCCeEEE
Q 009188 339 --------------D----KSICMWELGGKELECWKGQ--RT--------LKISDLEVT-SDGK---QIITMCKESALLL 386 (540)
Q Consensus 339 --------------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~i~~~-~~~~---~l~~~~~d~~i~~ 386 (540)
| +.|..+|..+++..-.... +. .++. +... .+|+ .++.++.+|.+++
T Consensus 272 ~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~ 350 (582)
T 1flg_A 272 TWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYV 350 (582)
T ss_dssp GGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEE
T ss_pred CcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEE
Confidence 2 5799999988776544321 11 1111 1221 4674 6788899999999
Q ss_pred EECCCceEEEeecCC---------------c--------------------------------eeEEEEcCCCCEEEEEe
Q 009188 387 LDREAKVERYIEEDQ---------------T--------------------------------ITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 387 ~d~~~~~~~~~~~~~---------------~--------------------------------i~~~~~s~~~~~l~~~~ 419 (540)
+|..++......... + -..++++|+...+++..
T Consensus 351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA 430 (582)
T ss_dssp EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence 998876622211000 0 01356677666665543
Q ss_pred c---------------------------------CCeEEEEEecCCceeeeEeeCCcCC-eeEEEeeeccCCCcEEEEee
Q 009188 420 L---------------------------------NQEIHLWNIEGEVKLVAKYKGHKRS-RFVIRSCFGGLEQAFIASGS 465 (540)
Q Consensus 420 ~---------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~s 465 (540)
. +|.|.-||+.++ +.+-........ ...+ ...+.+++.|+
T Consensus 431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~~~g~~-----~tagglvf~g~ 504 (582)
T 1flg_A 431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-KVVWEHKEHLPLWAGVL-----ATAGNLVFTGT 504 (582)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-CEEEEEEESSCCCSCCE-----EETTTEEEEEC
T ss_pred hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-CEEEEecCCCCCcccce-----EeCCCEEEEEC
Confidence 2 477888888877 444333322111 0011 12356788899
Q ss_pred CCCcEEEEECCCCceeEeecCCCCCe-EEEEeCCCCCCEEEEEe
Q 009188 466 EDSQVYIWHRASCDLIGALPGHSGAV-NCVSWNPANPHMLASAS 508 (540)
Q Consensus 466 ~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~~ 508 (540)
.||.++.||.++|+.+.+++...+.+ .-+.|..+|.+++++.+
T Consensus 505 ~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 505 GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 99999999999999998887543221 12556667765555443
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.65 E-value=2e-05 Score=69.17 Aligned_cols=192 Identities=9% Similarity=-0.002 Sum_probs=120.3
Q ss_pred eEEEEeecCC--CcEEEEEEecCCCEEEEEeCCC--cEEEEecCCceEEEeeccccc-eEEEEEEccCCCEEE-EEecCC
Q 009188 309 NCLHVYEKAG--LGLVSCGWHPDRKWIFSGANDK--SICMWELGGKELECWKGQRTL-KISDLEVTSDGKQII-TMCKES 382 (540)
Q Consensus 309 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~-~~~~d~ 382 (540)
+.+..+ .|. .-...+.|++ +..+.+++.+| .|+.+|+.+++.......... .-..+++ .+..+. ....++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCC
Confidence 345556 443 3456888886 55555656554 899999998877655433221 1123333 344444 445789
Q ss_pred eEEEEECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcC--CeeEEEeeeccCCCc
Q 009188 383 ALLLLDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKR--SRFVIRSCFGGLEQA 459 (540)
Q Consensus 383 ~i~~~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 459 (540)
.+.++|..+.. ...+.....- ..+.++++.|+++..++.|.++|..+. +...++..... +...+.-.. -.+|.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~G--wglt~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe-~~~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEG--WALTSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELE-WVNGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCC--CEEEECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEE-EETTE
T ss_pred EEEEEECCcCcEEEEEeCCCCc--eEEeeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeE-EeCCE
Confidence 99999998866 3333333333 344457777777777899999999876 55555544321 111111111 12666
Q ss_pred EEEEeeCCCcEEEEECCCCceeEeecCC-------------CCCeEEEEeCCCCCCEEEEEe
Q 009188 460 FIASGSEDSQVYIWHRASCDLIGALPGH-------------SGAVNCVSWNPANPHMLASAS 508 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~~l~s~~ 508 (540)
..+..-.+..|.+.|..+|+.+..+.-. ....+.|+|+|++.++++||-
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6665556789999999999998876521 135689999998876666663
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=5.8e-06 Score=73.19 Aligned_cols=193 Identities=12% Similarity=0.060 Sum_probs=121.7
Q ss_pred eEEEEeecCCC--cEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEE
Q 009188 309 NCLHVYEKAGL--GLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLL 386 (540)
Q Consensus 309 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~ 386 (540)
+.+.++ .|+. -...+.|+ ++..+.+.+.+|.|+.+|+.+++...........-..+++.. ++..+....++.+.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEE
Confidence 345555 3432 34678887 456667778888999999988766554411111123344432 344445557899999
Q ss_pred EECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCC--eeEEEeeeccCCCcEEEE
Q 009188 387 LDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRS--RFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 387 ~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s 463 (540)
+|..+.. ...+.....-..+ .++++.|+++..++.|.++|..+. +....+...... ...+.-..+. +|.+.+.
T Consensus 121 ~D~~Tl~~~~ti~~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan 196 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIYAN 196 (268)
T ss_dssp EETTTTEEEEEEECSSCCCCE--EEETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECCcCcEEEEEeCCCceeEE--ecCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEEEE
Confidence 9998866 3333333332333 457888888878999999998877 555555443221 1111111112 6666655
Q ss_pred eeCCCcEEEEECCCCceeEeecCC-------------CCCeEEEEeCCCCCCEEEEEe
Q 009188 464 GSEDSQVYIWHRASCDLIGALPGH-------------SGAVNCVSWNPANPHMLASAS 508 (540)
Q Consensus 464 ~s~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~~l~s~~ 508 (540)
.-.++.|.+.|..+++.+..+.-. ....+.|||+|++.++++||-
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 556889999999999998776521 136789999998877777763
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.64 E-value=0.00011 Score=71.17 Aligned_cols=242 Identities=9% Similarity=-0.038 Sum_probs=152.2
Q ss_pred eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CCCcEEEEECCCC----eEEEEeecCCC
Q 009188 245 YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VEEAVRRWDVSSG----NCLHVYEKAGL 319 (540)
Q Consensus 245 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~~~~ 319 (540)
+|+.+.. ..|+..+++... ... +......+..++|++.+..|+.+. ..+.|+.+++... .....+.....
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~-~~~---~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSE-YTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEET-TEEEEECTTSCS-CEE---EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEecc-ceeEEEccCCcc-eeE---eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 4555443 567777776432 111 223456788999998666555554 5678988988652 23333333445
Q ss_pred cEEEEEEecCCCEEE-EEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec--CCeEEEEECCCceEEE
Q 009188 320 GLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK--ESALLLLDREAKVERY 396 (540)
Q Consensus 320 ~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~ 396 (540)
....+++.+.+..|+ +-...+.|.+.++++................++++|.+..++.... .+.|...+........
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 678899998544454 4456778999999876655555444456899999997776666553 4789999988755322
Q ss_pred e--ecCCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeC--CcCCeeEEEeeeccCCCcEEEEeeCCCcEE
Q 009188 397 I--EEDQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKG--HKRSRFVIRSCFGGLEQAFIASGSEDSQVY 471 (540)
Q Consensus 397 ~--~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~ 471 (540)
. ..-...+.+++++++..|..+. ..+.|..+|+.+.. ....... .......+.. ..+.++++-...+.|.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v----~~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIF 314 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEE----ETTEEEEEESSSCSEE
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEE----eCCEEEEecCCCCeEE
Confidence 2 2335788999998777666664 46789999987642 2222222 1122223332 2445666667778899
Q ss_pred EEECCCCceeEeecCCCCCeEEEEe
Q 009188 472 IWHRASCDLIGALPGHSGAVNCVSW 496 (540)
Q Consensus 472 iwd~~~~~~~~~~~~h~~~v~~l~~ 496 (540)
.+|..+|+.+..+........++..
T Consensus 315 ~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 315 SANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEEcCCCCceEEEecCCCCCceEEE
Confidence 9998888877777654444555543
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.64 E-value=7.3e-06 Score=86.55 Aligned_cols=240 Identities=9% Similarity=0.031 Sum_probs=134.8
Q ss_pred CeEEEEEC-cCCCeEEEeeC-CC----cEEEEECCCC-eEEE-EeecCCCcEEEEEEecCCCEEEEEeCC-----CcEEE
Q 009188 278 PVSCVSWS-SDDQQLLTCGV-EE----AVRRWDVSSG-NCLH-VYEKAGLGLVSCGWHPDRKWIFSGAND-----KSICM 344 (540)
Q Consensus 278 ~v~~l~~s-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i 344 (540)
.+...+|| |||++|+.+.. +| .|+++|+.++ +.+. .+. .....++|+|||+.|+....+ ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886543 22 4999999998 6321 111 113457899999988877665 25888
Q ss_pred EecCCce---EEEeeccccceEEEEEEccCCCEEEEEec---CCeEEEEECCCce--E--E-Eee-cCCceeEEEEcCCC
Q 009188 345 WELGGKE---LECWKGQRTLKISDLEVTSDGKQIITMCK---ESALLLLDREAKV--E--R-YIE-EDQTITSFSLSRDN 412 (540)
Q Consensus 345 wd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~~d~~~~~--~--~-~~~-~~~~i~~~~~s~~~ 412 (540)
+++.+.. ...+..........+.|+|||++|+.... ...|+++|+.+.. . . ... ......++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 8887643 22222222234668899999999887663 3468888987641 2 2 222 23344455544444
Q ss_pred CEEEEEecC--C--eEEEEEecCCceeeeE-eeCCcCCeeEEEeeeccCCCcEEEEeeCCCc--EEEEEC-------CCC
Q 009188 413 KFLLVNLLN--Q--EIHLWNIEGEVKLVAK-YKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ--VYIWHR-------ASC 478 (540)
Q Consensus 413 ~~l~~~~~d--g--~i~i~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~--i~iwd~-------~~~ 478 (540)
.+++....+ + .|..+|+.+.... .. +..+......-.+.+ . .+.++++...+|. |+++|+ .++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~-~~~li~~~~~~~l~~~~~-~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDW-SHVLVDHSEDVFMESIAV-R-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCC-CCEEECCCSSEEEEEEEE-C-SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccc-eeeEECCCCCcEEEEEEE-E-CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 444444433 2 5666666532111 22 222222222222222 2 3456677777885 555665 344
Q ss_pred ceeEeecC-CCCCeEEEEe----CCCCCCEEEEEeCC---CcEEEecCCCCCc
Q 009188 479 DLIGALPG-HSGAVNCVSW----NPANPHMLASASDD---RTIRIWGLKDLNV 523 (540)
Q Consensus 479 ~~~~~~~~-h~~~v~~l~~----~~~~~~~l~s~~~D---g~i~iw~~~~~~~ 523 (540)
+....+.- ....+..+.+ +++++.++++.+.. +.+..+|+.+++.
T Consensus 409 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 409 TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 41333321 1123445544 44665566666554 3577888877653
No 270
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.59 E-value=0.00027 Score=66.40 Aligned_cols=273 Identities=7% Similarity=-0.003 Sum_probs=147.0
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEE-ecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHK-LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
...+.++.|.+++..+++ +..|.| +...+.+........ .......+.+|.|.+ +.. +.++..+.|.. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~-~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEG-WIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEE-EEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeE-EEEECCCeEEE-ECCCCC
Confidence 457999999887777774 456654 333333333332211 112244688999976 444 44555664433 223344
Q ss_pred EEEEee---cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEE
Q 009188 310 CLHVYE---KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLL 386 (540)
Q Consensus 310 ~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~ 386 (540)
.-.... .....+..+.+.+++..++++ .+|.|..-.=.+..-..........+..+.+.+++..++++...+..+-
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S 188 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYST 188 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEE
Confidence 323222 123457778877777655554 4565433211223333333333446888999999887766644443344
Q ss_pred EECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCC----cCCeeEEEeeeccCCCcE
Q 009188 387 LDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGH----KRSRFVIRSCFGGLEQAF 460 (540)
Q Consensus 387 ~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~ 460 (540)
.|..... .........+..+.+.++++.++ .+.+|.+++.+...+ ..-...... ...... ..+ .+++.+
T Consensus 189 ~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~--v~~-~~~~~~ 263 (327)
T 2xbg_A 189 WEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLD--LAY-RTPNEV 263 (327)
T ss_dssp ECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEE--EEE-SSSSCE
T ss_pred eCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC-CeeEeccCCcccCCcceEE--EEe-cCCCEE
Confidence 4431222 22233456788899999887664 455777776642212 222222111 111222 223 456666
Q ss_pred EEEeeCCCcEEEEECCCCceeEeec---CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 461 IASGSEDSQVYIWHRASCDLIGALP---GHSGAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 461 l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
++++. +|.| .+....|+.-..+. .+...+.++.|.+++ .++.++.+|.|.-++-
T Consensus 264 ~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 264 WLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred EEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence 66554 6766 34445455444443 234568889887544 5778888998877664
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.59 E-value=5.1e-05 Score=73.14 Aligned_cols=252 Identities=8% Similarity=-0.040 Sum_probs=152.6
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEEEEECCCCeEEE
Q 009188 234 VWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVRRWDVSSGNCLH 312 (540)
Q Consensus 234 V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~ 312 (540)
-.|.+..+ ..+|+.+.. ..|+..+++... .. ... .....+..++|++.+..|+.+ ...+.|..+++..+....
T Consensus 79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~-~~--~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSE-YT--LLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SCEEECSS-CCEEEEECB-SCEEEECTTSCC-CE--EEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CeECCccc-cceeEeecC-ccceeeccCCCc-EE--EEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 34555555 334444433 567777765432 11 122 234558899999765555544 456789999987765444
Q ss_pred EeecCCCcEEEEEEecCCCEEE-EEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cC-CeEEEEEC
Q 009188 313 VYEKAGLGLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KE-SALLLLDR 389 (540)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d-~~i~~~d~ 389 (540)
.+.........+++++.+..|+ +-...+.|.+.++.+................++++|.+..++... .. +.|..++.
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 4433334556788988555554 445567899999876554444444445789999998777666555 34 68999988
Q ss_pred CCceEEEe--ecCCceeEEEEcCCCCEEEEE-ecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeC
Q 009188 390 EAKVERYI--EEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSE 466 (540)
Q Consensus 390 ~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~ 466 (540)
........ ......+.++++|++..|..+ +..+.|..+|+.+... ...+.........+.. ..+.++++...
T Consensus 233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav----~~~~ly~td~~ 307 (386)
T 3v65_B 233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV----FEDSLYWTDWH 307 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE----ETTEEEEEETT
T ss_pred CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE----ECCEEEEeeCC
Confidence 77553322 234457899999876665555 4567899999875422 2222222222233333 24456666667
Q ss_pred CCcEEEEECCCCceeEeecCCCCCeEEEEe
Q 009188 467 DSQVYIWHRASCDLIGALPGHSGAVNCVSW 496 (540)
Q Consensus 467 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 496 (540)
.+.|..+|..+|+.+..+........++++
T Consensus 308 ~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 788888887777776666543333444443
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.59 E-value=3.9e-05 Score=67.36 Aligned_cols=189 Identities=11% Similarity=0.077 Sum_probs=121.0
Q ss_pred ceEEecccCc--CcEEEEEEecCCCeEEEEeCC--CcEEEEEeecCCceEEEEEecCCCCC-eEEEEECcCCCeEEEeeC
Q 009188 222 RTLQILQGHT--DEVWFLQFSHNGKYLASSSND--RSAIIWEVDLNGGVTLKHKLSGHQKP-VSCVSWSSDDQQLLTCGV 296 (540)
Q Consensus 222 ~~~~~l~~h~--~~V~~~~~sp~g~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~ 296 (540)
+.+..+ .|. .-...+.|++ +.+..+.+.+ ..|+.+|+.++. ......-.... --.+++. .++..+....
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk---v~~~~~l~~~~fgeGi~~~-~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR---ILQRAEVPPPYFGAGIVAW-RDRLIQLTWR 83 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC---EEEEEECCTTCCEEEEEEE-TTEEEEEESS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC---EEEEEeCCCCcceeEEEEe-CCEEEEEEee
Confidence 445555 354 3466889986 5555555554 489999998763 33333222211 1234443 2344444557
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc-----cceEEEEEEccC
Q 009188 297 EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR-----TLKISDLEVTSD 371 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~i~~~~~ 371 (540)
++.+.+||..+.+.+.++...... ..++ +++..|+.+..++.|.++|..+.+........ -..++.+.+. +
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~ 159 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N 159 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence 889999999999999998765433 3444 56777887777889999999876554433221 1245566665 6
Q ss_pred CCEEEEEecCCeEEEEECCCceE-EEee--------------cCCceeEEEEcCCCCEEEEEec
Q 009188 372 GKQIITMCKESALLLLDREAKVE-RYIE--------------EDQTITSFSLSRDNKFLLVNLL 420 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~~-~~~~--------------~~~~i~~~~~s~~~~~l~~~~~ 420 (540)
|+.++....+..|.+.|..++.. ..+. .....+.++++|+++.|++.+.
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 66665555788999999988762 2221 1235689999998877776663
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.57 E-value=0.00019 Score=68.05 Aligned_cols=235 Identities=9% Similarity=0.012 Sum_probs=142.8
Q ss_pred EEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEEecCCceEEEeecc
Q 009188 280 SCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMWELGGKELECWKGQ 358 (540)
Q Consensus 280 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 358 (540)
+|.+..+++ +|+.+ ....|+..++.......... ....+..++|++.+..|+.+. ..+.|..+++.+.........
T Consensus 37 ~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 37 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred cccccccCc-eeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 344444433 34433 34458888876655544443 334578999998666666554 567899999987655544433
Q ss_pred ccceEEEEEEccCCCEE-EEEecCCeEEEEECCCceEE-Ee-ecCCceeEEEEcCCCCEEEEEe-cC-CeEEEEEecCCc
Q 009188 359 RTLKISDLEVTSDGKQI-ITMCKESALLLLDREAKVER-YI-EEDQTITSFSLSRDNKFLLVNL-LN-QEIHLWNIEGEV 433 (540)
Q Consensus 359 ~~~~v~~i~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~-~~-~~~~~i~~~~~s~~~~~l~~~~-~d-g~i~i~d~~~~~ 433 (540)
.......+++++.+..+ ++-...+.|.+.+....... .. ........++++|.+..++... .. +.|..+++.+..
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 33456788999765555 44456788999998876522 22 2345678999999766555544 34 778888876542
Q ss_pred eeeeEe-eCCcCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCC
Q 009188 434 KLVAKY-KGHKRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDR 511 (540)
Q Consensus 434 ~~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg 511 (540)
. ..+ .........+ .+ ++ ++.+.++-+..+.|..+|+........+........++++. .+ .++++-...+
T Consensus 194 ~--~~~~~~~~~~PnGl--a~-d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~ 266 (349)
T 3v64_C 194 R--RIIADTHLFWPNGL--TI-DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTK 266 (349)
T ss_dssp C--EESCCSSCSCEEEE--EE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred c--EEEEECCCCCcceE--EE-eCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCC
Confidence 1 222 1111111222 22 54 44555555567789999987544333343344567788883 34 4777777788
Q ss_pred cEEEecCCCCCcc
Q 009188 512 TIRIWGLKDLNVK 524 (540)
Q Consensus 512 ~i~iw~~~~~~~~ 524 (540)
.|..++..+|+..
T Consensus 267 ~V~~~~~~~G~~~ 279 (349)
T 3v64_C 267 SINSANKFTGKNQ 279 (349)
T ss_dssp EEEEEETTTCCSC
T ss_pred eEEEEEccCCCcc
Confidence 8888886555543
No 274
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=2.1e-05 Score=69.68 Aligned_cols=188 Identities=12% Similarity=0.097 Sum_probs=122.8
Q ss_pred ceEEecccCcC--cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCc
Q 009188 222 RTLQILQGHTD--EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA 299 (540)
Q Consensus 222 ~~~~~l~~h~~--~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 299 (540)
+.++.+ .|.. -...+.|+ ++.+..+.+.+|.|+++|+.++...... +... -.--.+++.. ++..+....++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCE
Confidence 444555 3443 34688887 4566677778889999999877544333 3321 1123355543 334444457889
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccc-----cceEEEEEEccCCCE
Q 009188 300 VRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR-----TLKISDLEVTSDGKQ 374 (540)
Q Consensus 300 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~ 374 (540)
+.+||..+.+.+.++...... ..++ ++++.|+.+..++.|.++|..+.+........ -..++.+.|. +|+.
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 999999999999998764432 3444 56788888887889999999886655433221 1245667776 7765
Q ss_pred EEEEecCCeEEEEECCCce-EEEee--------------cCCceeEEEEcCCCCEEEEEe
Q 009188 375 IITMCKESALLLLDREAKV-ERYIE--------------EDQTITSFSLSRDNKFLLVNL 419 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~-~~~~~--------------~~~~i~~~~~s~~~~~l~~~~ 419 (540)
++....+..|.+.|..++. ...+. ...-.+.|+++|+++.|++.+
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 5555578899999998876 22221 123568999999876666655
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.50 E-value=0.00026 Score=63.02 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=128.1
Q ss_pred EecccCcCcEEEEEEecCCCeEEE-EeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEE
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLAS-SSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRW 303 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 303 (540)
+.+.|-.+.+..++|+|++..|++ ...++.|...|.. +.......+.+ ....-.|++.+++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 456677788999999998765554 6667777777665 33222222333 3567888999888877776567789999
Q ss_pred ECCCCeE---EEEee------cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC----ceEEEee------ccccceEE
Q 009188 304 DVSSGNC---LHVYE------KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG----KELECWK------GQRTLKIS 364 (540)
Q Consensus 304 d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~------~~~~~~v~ 364 (540)
++..... +.... ........++|+|.++.|+++.......+|.+++ ..+.... ......+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8765432 22222 1234568999999988887777665555555532 1111111 11223568
Q ss_pred EEEEccCCCEEEEE-ecCCeEEEEECCCceEEEeecC----------CceeEEEEcCCCCEEEEEecCCeEEEEE
Q 009188 365 DLEVTSDGKQIITM-CKESALLLLDREAKVERYIEED----------QTITSFSLSRDNKFLLVNLLNQEIHLWN 428 (540)
Q Consensus 365 ~i~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~i~d 428 (540)
+++++|....+++. .....+..+|..........-. .....|+|.++|+..++ +..+.++.+.
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 89999876655554 4667788999888764443322 35689999999985554 6666665554
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.00086 Score=62.51 Aligned_cols=220 Identities=9% Similarity=-0.009 Sum_probs=134.7
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEEecCC----ceEEEeeccccceEEEEEEccC
Q 009188 297 EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMWELGG----KELECWKGQRTLKISDLEVTSD 371 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~ 371 (540)
...|+..|+.+++....+. ....+..++|++.+..|+.+. .++.|..+++.+ .............+..+++++.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3568999998877655553 345678999998766665554 557899999876 2323333222235678899875
Q ss_pred CCEEE-EEecCCeEEEEECCCceEE-Eee-cCCceeEEEEcCCCCEEEEEecC--CeEEEEEecCCceeeeEe-eCCcCC
Q 009188 372 GKQII-TMCKESALLLLDREAKVER-YIE-EDQTITSFSLSRDNKFLLVNLLN--QEIHLWNIEGEVKLVAKY-KGHKRS 445 (540)
Q Consensus 372 ~~~l~-~~~~d~~i~~~d~~~~~~~-~~~-~~~~i~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~-~~~~~~ 445 (540)
+..++ +-...+.|.+++....... ... .......++++|.+..++.+... +.|..+++.+... ..+ ...-..
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--~~~~~~~~~~ 165 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQW 165 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEECSSCSC
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--EEEEECCCCC
Confidence 55554 4456789999998875432 222 34577899999977666655543 6788888765422 222 111111
Q ss_pred eeEEEeeeccCC-CcEEEEeeCCCcEEEEECCCCceeEeec--CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCC
Q 009188 446 RFVIRSCFGGLE-QAFIASGSEDSQVYIWHRASCDLIGALP--GHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLN 522 (540)
Q Consensus 446 ~~~i~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~ 522 (540)
...+. + +++ +.+.++-+..+.|..+|........... .......++++.. + +++++-...+.|..++..+++
T Consensus 166 P~gla--~-d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 166 PNGIT--L-DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEE--E-ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred ceEEE--E-eccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCc
Confidence 12222 2 544 4455555567799999987433322222 1234567888853 4 477777778889999887665
Q ss_pred cc
Q 009188 523 VK 524 (540)
Q Consensus 523 ~~ 524 (540)
..
T Consensus 241 ~~ 242 (316)
T 1ijq_A 241 DV 242 (316)
T ss_dssp CC
T ss_pred ce
Confidence 43
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.48 E-value=2.7e-05 Score=82.25 Aligned_cols=194 Identities=13% Similarity=0.154 Sum_probs=113.8
Q ss_pred cCcC-cEEEEEEe-cCCCeEEEEeC-CC----cEEEEEeecC-CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---
Q 009188 229 GHTD-EVWFLQFS-HNGKYLASSSN-DR----SAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE--- 297 (540)
Q Consensus 229 ~h~~-~V~~~~~s-p~g~~l~tg~~-dg----~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--- 297 (540)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ .... ..+.. ....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~~---~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVSG---TNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEEE---ECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccccC---ceeeEEEecCCCEEEEEEECCCC
Confidence 3443 68899999 99998886543 23 4889988765 3111 01111 12457899999988887765
Q ss_pred --CcEEEEECCCCeE--EEEeec-CCCcEEEEEEecCCCEEEEEeCC---CcEEEEecCCc--eE--EEeeccccceEEE
Q 009188 298 --EAVRRWDVSSGNC--LHVYEK-AGLGLVSCGWHPDRKWIFSGAND---KSICMWELGGK--EL--ECWKGQRTLKISD 365 (540)
Q Consensus 298 --g~i~iwd~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~--~~--~~~~~~~~~~v~~ 365 (540)
..|.++++.++.. ...+.. .......+.|+|||++|+..+.+ ..|.++|+.++ .. ............+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 2588889877642 233332 22346678999999988876533 36888998764 23 3333333333344
Q ss_pred EEEccCCCEEEEEe-cC----CeEEEEECCC-ce-EE-EeecCC--ceeEEEEcCCCCEEEEEecCCe--EEEEEe
Q 009188 366 LEVTSDGKQIITMC-KE----SALLLLDREA-KV-ER-YIEEDQ--TITSFSLSRDNKFLLVNLLNQE--IHLWNI 429 (540)
Q Consensus 366 i~~~~~~~~l~~~~-~d----~~i~~~d~~~-~~-~~-~~~~~~--~i~~~~~s~~~~~l~~~~~dg~--i~i~d~ 429 (540)
+.|+. |..|+..+ .+ ..|..++..+ .. .. ...+.. .+..+.+. .+.++++...++. |.++++
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 44433 55555444 33 3677888764 22 23 343333 34555554 2344555666775 445554
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.47 E-value=0.00021 Score=68.84 Aligned_cols=235 Identities=9% Similarity=0.006 Sum_probs=144.2
Q ss_pred EEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEE-eCCCcEEEEecCCceEEEeeccc
Q 009188 281 CVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSG-ANDKSICMWELGGKELECWKGQR 359 (540)
Q Consensus 281 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 359 (540)
|.+..+. .+|+.+ ....|+..++..+....... ....+..++|++.+..|+.+ ...+.|..+++.+.....+....
T Consensus 81 C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 81 CKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp EEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred ECCcccc-ceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 4444443 344433 34568888887766544443 34467899999866666555 45678999999876655544433
Q ss_pred cceEEEEEEccCCCEEE-EEecCCeEEEEECCCce-EEEe-ecCCceeEEEEcCCCCEEEEEec-C-CeEEEEEecCCce
Q 009188 360 TLKISDLEVTSDGKQII-TMCKESALLLLDREAKV-ERYI-EEDQTITSFSLSRDNKFLLVNLL-N-QEIHLWNIEGEVK 434 (540)
Q Consensus 360 ~~~v~~i~~~~~~~~l~-~~~~d~~i~~~d~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~-d-g~i~i~d~~~~~~ 434 (540)
......+++++.+..|+ +-...+.|.+.+..... .... ........++++|.+..|+.+.. . +.|..+++.+...
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 34567789987655554 44556789888887654 2222 23356789999997766665543 3 6788888765422
Q ss_pred eeeEeeCCcCCeeEEEeeeccC-CCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcE
Q 009188 435 LVAKYKGHKRSRFVIRSCFGGL-EQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTI 513 (540)
Q Consensus 435 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i 513 (540)
. ............+. + ++ .+.+.++-+..+.|..+|+........+........++++. .+ .++++-...+.|
T Consensus 238 ~-~~~~~~~~~PnGla--v-d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V 311 (386)
T 3v65_B 238 R-IIADTHLFWPNGLT--I-DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSI 311 (386)
T ss_dssp E-EEECSSCSCEEEEE--E-EGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEE
T ss_pred E-EEEECCCCCeeeEE--E-eCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCeE
Confidence 1 11111111112222 2 43 45555555667789999987544433343344567788883 34 477777778889
Q ss_pred EEecCCCCCcc
Q 009188 514 RIWGLKDLNVK 524 (540)
Q Consensus 514 ~iw~~~~~~~~ 524 (540)
..++..+++..
T Consensus 312 ~~~~~~~G~~~ 322 (386)
T 3v65_B 312 NSANKFTGKNQ 322 (386)
T ss_dssp EEEETTTCCSC
T ss_pred EEEECCCCcce
Confidence 88886666543
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=5.3e-05 Score=74.11 Aligned_cols=153 Identities=11% Similarity=0.129 Sum_probs=96.3
Q ss_pred cEEEEEEec-CCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC-C----cEEEEECC
Q 009188 233 EVWFLQFSH-NGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE-E----AVRRWDVS 306 (540)
Q Consensus 233 ~V~~~~~sp-~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g----~i~iwd~~ 306 (540)
....++++| ++..|+.+...+.|+.+|.+.+ .. ..+.........++|++++++|+.+... + .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---~v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---YV-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---EE-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---EE-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 457899998 4555666655577888877643 22 2233345668899999999966666542 2 2333443
Q ss_pred CCeEE--EEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceEEEee-ccccceEEEEEEccCCCEEEEE-ecC
Q 009188 307 SGNCL--HVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKELECWK-GQRTLKISDLEVTSDGKQIITM-CKE 381 (540)
Q Consensus 307 ~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~~d 381 (540)
.+... ..+.. ......++++| ++..+++-..++.|..++..+....... .........++++|+|++++.+ ...
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 33221 22222 23456788999 6665566556789999999876653322 2222357789999999955544 467
Q ss_pred CeEEEEECCC
Q 009188 382 SALLLLDREA 391 (540)
Q Consensus 382 ~~i~~~d~~~ 391 (540)
+.|..++...
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 8899887653
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.40 E-value=0.00056 Score=63.73 Aligned_cols=242 Identities=11% Similarity=0.038 Sum_probs=144.4
Q ss_pred eEEEEeCCCcEEEEEeecCC-ceEEEEEecCCCCCeEEEEECcCCCeEE-EeeCCCcEEEEECCCCeE-EEEeecCCCcE
Q 009188 245 YLASSSNDRSAIIWEVDLNG-GVTLKHKLSGHQKPVSCVSWSSDDQQLL-TCGVEEAVRRWDVSSGNC-LHVYEKAGLGL 321 (540)
Q Consensus 245 ~l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v 321 (540)
+|+.+. ...|+..+++... ..... .. ....+..++|++.+..|. +-...+.|..+++..+.. ...+...-...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~--~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIV--VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEE--EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEE--ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 344433 3568888876442 11111 11 123467899998655544 444567899999876532 12222222345
Q ss_pred EEEEEecCCCEEE-EEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe--cCCeEEEEECCCceEE-Ee
Q 009188 322 VSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC--KESALLLLDREAKVER-YI 397 (540)
Q Consensus 322 ~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~-~~ 397 (540)
..+++.+.+..|+ +-...+.|.++++++................++++|.+..++.+. ..+.|...+....... ..
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 6788887555554 445567899999987554444434445688999999776666665 3578999988765422 22
Q ss_pred -ecCCceeEEEEcCCCCEEEEE-ecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEEC
Q 009188 398 -EEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 398 -~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~ 475 (540)
..-...+.+++++++..|..+ +..+.|..+|+.+... .....+.......+.. . .+.++++-...+.|..+|.
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav---~-~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTL---F-EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEE---E-TTEEEEEETTTTEEEEEET
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEE---e-CCEEEEEecCCCeEEEEEC
Confidence 233567899999976666555 4567899999875422 1122222222233332 1 3455666667788999998
Q ss_pred CCCceeEeecCCCCCeEEEE
Q 009188 476 ASCDLIGALPGHSGAVNCVS 495 (540)
Q Consensus 476 ~~~~~~~~~~~h~~~v~~l~ 495 (540)
.+|+....+........+++
T Consensus 237 ~~G~~~~~i~~~~~~P~~i~ 256 (318)
T 3sov_A 237 YTGEGLREIHSDIFSPMDIH 256 (318)
T ss_dssp TTCCSCEEEECCCSSCCCEE
T ss_pred CCCCceEEEeCCCCCCcEEE
Confidence 88877666553323333343
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.39 E-value=0.0009 Score=64.66 Aligned_cols=202 Identities=12% Similarity=0.036 Sum_probs=128.5
Q ss_pred CcCcEEEEEEecCCCeEEEE-eCCCcEEEEEeecCCc-eEEEEEecCCCCCeEEEEECcC-CCeEEEeeCCCcEEEEECC
Q 009188 230 HTDEVWFLQFSHNGKYLASS-SNDRSAIIWEVDLNGG-VTLKHKLSGHQKPVSCVSWSSD-DQQLLTCGVEEAVRRWDVS 306 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg-~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~ 306 (540)
....+..++|++.+..|+.+ ...+.|..++++.... ................+++.+. +++.++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 45678899999866666555 4567788888763210 0112223334456788999874 4455555567889999987
Q ss_pred CCeEEEEeecCCCcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCe
Q 009188 307 SGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESA 383 (540)
Q Consensus 307 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~ 383 (540)
.......+.........++++|.+..|+.+.. .+.|...++++.....+..........+++++++..|+.+. ..+.
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 65544444444456789999997666766653 36899999987655554444445789999998887777665 5678
Q ss_pred EEEEECCCceE-EEeec---CCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 384 LLLLDREAKVE-RYIEE---DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 384 i~~~d~~~~~~-~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
|..+|...... ..... ......+++. .+..+++....+.|..+|..++
T Consensus 270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 99999877552 22221 2345566663 3345555556677888875444
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.38 E-value=6.2e-06 Score=85.80 Aligned_cols=240 Identities=9% Similarity=0.035 Sum_probs=139.5
Q ss_pred EEEECc-CCCeEEEeeCCC-----------cEEEEECCCCeEE--EEeec-CCCcEEEEEEecCCCEEEEEeC-CCcEEE
Q 009188 281 CVSWSS-DDQQLLTCGVEE-----------AVRRWDVSSGNCL--HVYEK-AGLGLVSCGWHPDRKWIFSGAN-DKSICM 344 (540)
Q Consensus 281 ~l~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 344 (540)
+.++.+ +++.++.|+.+. .+.+||..+++.. ..+.. +.....++++..+++.+++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 888888887543 5889999887532 22222 2222334677789999999885 457999
Q ss_pred EecCCceEEEeeccccce-EEEEEEccCCCEEEEEe-cC-----CeEEEEECCCceEEEeec------CCceeEEEEcCC
Q 009188 345 WELGGKELECWKGQRTLK-ISDLEVTSDGKQIITMC-KE-----SALLLLDREAKVERYIEE------DQTITSFSLSRD 411 (540)
Q Consensus 345 wd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~~~------~~~i~~~~~s~~ 411 (540)
||..+............+ -.+++..++++.++.|+ .+ ..+.+||..+..-..... ...-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 999876655443222111 23455667899999988 34 568999998877333210 000001122345
Q ss_pred CCEEEEEecCC---------eEEEEEecCCceeeeEeeCCcC-------CeeEEEeeeccCCCcEEEEeeCCC-------
Q 009188 412 NKFLLVNLLNQ---------EIHLWNIEGEVKLVAKYKGHKR-------SRFVIRSCFGGLEQAFIASGSEDS------- 468 (540)
Q Consensus 412 ~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~s~dg------- 468 (540)
+..++.++.+| .+..||..+... ......... .......++-..++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 56666665554 467788766521 111111110 001111222134778888888543
Q ss_pred ----cEEEEECCCCceeEee--cCCCCCe-EEEEeCCCCCCEEEEEeCC-----------CcEEEecCCCCC
Q 009188 469 ----QVYIWHRASCDLIGAL--PGHSGAV-NCVSWNPANPHMLASASDD-----------RTIRIWGLKDLN 522 (540)
Q Consensus 469 ----~i~iwd~~~~~~~~~~--~~h~~~v-~~l~~~~~~~~~l~s~~~D-----------g~i~iw~~~~~~ 522 (540)
.|.+||..+..-.... .-+.... .+++..|++. +++.||.+ ..+.+||..+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 6888888776554332 1122222 3445667785 88888865 468999987654
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.38 E-value=8.9e-05 Score=72.49 Aligned_cols=236 Identities=9% Similarity=0.010 Sum_probs=137.5
Q ss_pred CeEEEEECcC--CCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC-----cEEEEecCCc
Q 009188 278 PVSCVSWSSD--DQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK-----SICMWELGGK 350 (540)
Q Consensus 278 ~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 350 (540)
....++|+|+ +..|+.+...+.|+.+|..++...... ........++++++++ |+++...+ .+...+..+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 444555544488999999888765544 3445688999999999 55554422 2333333221
Q ss_pred eE-EEeeccccceEEEEEEcc-CCCEEEEEecCCeEEEEECCCceE--EEee--cCCceeEEEEcCCCCEEEEE-ecCCe
Q 009188 351 EL-ECWKGQRTLKISDLEVTS-DGKQIITMCKESALLLLDREAKVE--RYIE--EDQTITSFSLSRDNKFLLVN-LLNQE 423 (540)
Q Consensus 351 ~~-~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~~d~~~~~~--~~~~--~~~~i~~~~~s~~~~~l~~~-~~dg~ 423 (540)
.. ..... .......+++++ +|..+++-..++.|+.+|..+... .... .......++++|++++|.++ ...+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 00111 122456788999 677666666778999999875442 2221 12223469999999955555 45678
Q ss_pred EEEEEecCCce-e--eeEeeCC---c------------CCeeEEEeeec------cCCCcEEEEeeCCCcEEEEECCCCc
Q 009188 424 IHLWNIEGEVK-L--VAKYKGH---K------------RSRFVIRSCFG------GLEQAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 424 i~i~d~~~~~~-~--~~~~~~~---~------------~~~~~i~~~~~------~~~~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
|+.++...... . ...+.+. . .....+.+... ..++.++++-..++.|+.++. +|.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 99988753211 1 1122111 0 01111221100 456666676667788888884 454
Q ss_pred eeEeecCC------------------CCCeEEEEeC-CCCCCEEEEEeCCCcEEEecCC
Q 009188 480 LIGALPGH------------------SGAVNCVSWN-PANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 480 ~~~~~~~h------------------~~~v~~l~~~-~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
.. ++.+. -.....|+++ +++ .++++-...+.|+.++++
T Consensus 376 v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred EE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEecC
Confidence 33 32221 1236789999 555 477776677788887764
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00014 Score=71.29 Aligned_cols=244 Identities=9% Similarity=0.069 Sum_probs=144.9
Q ss_pred CeEEEEECcC-CCeEEEe-eCCCcEEEEECCCCeEEEEeecC---CCcEEEEEE-------ecCCCEEEEEeCCC-----
Q 009188 278 PVSCVSWSSD-DQQLLTC-GVEEAVRRWDVSSGNCLHVYEKA---GLGLVSCGW-------HPDRKWIFSGANDK----- 340 (540)
Q Consensus 278 ~v~~l~~s~~-~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg----- 340 (540)
....|+|+|. +..|+.+ ...+.|++.|+.++......... ......++| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3678999983 4444444 44467999998887766554332 235889999 99999777776654
Q ss_pred --cEEEEecCC-ceEE-----EeeccccceEEEEEEccC-CCEEEEEecCCeEEEEECC-------CceE----------
Q 009188 341 --SICMWELGG-KELE-----CWKGQRTLKISDLEVTSD-GKQIITMCKESALLLLDRE-------AKVE---------- 394 (540)
Q Consensus 341 --~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~~d~~-------~~~~---------- 394 (540)
.|.+++... +... .... .......++++|+ +..+++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 1211 1111 1123457788995 5555566678889999987 3322
Q ss_pred ---EE--eecCCceeEEEEcCCCCEEEEE-ecCCeEEEEEecCCceee---eEeeCC---cCC----------eeEEEee
Q 009188 395 ---RY--IEEDQTITSFSLSRDNKFLLVN-LLNQEIHLWNIEGEVKLV---AKYKGH---KRS----------RFVIRSC 452 (540)
Q Consensus 395 ---~~--~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~---~~~~~~---~~~----------~~~i~~~ 452 (540)
.. .........++|+|+|++|.++ +..+.|+.++.......+ ..+.+. .+. ......+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 11 1223456799999999965554 557789887765432111 222221 000 0011011
Q ss_pred ecc-------CCCcEEEEeeCCCcEEEEECCCCceeEeecCC------------------------CCCeEEEEeCCC-C
Q 009188 453 FGG-------LEQAFIASGSEDSQVYIWHRASCDLIGALPGH------------------------SGAVNCVSWNPA-N 500 (540)
Q Consensus 453 ~~~-------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h------------------------~~~v~~l~~~~~-~ 500 (540)
+.. .++.++++-..+++|+.++ .+|. +.++.+. -.....|+++++ +
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 212 4567777777788899998 4553 3333221 124678999986 5
Q ss_pred CCEEEEEeCCCcEEEecCCCCCccc
Q 009188 501 PHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 501 ~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
.++++=.....||.+++.......
T Consensus 457 -~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 457 -MFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp -EEEEEETTTTEEEEEEECCCC---
T ss_pred -EEEEEeCCCCEEEEEECCCCcccc
Confidence 477777778889999988765543
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.30 E-value=0.00064 Score=71.29 Aligned_cols=224 Identities=8% Similarity=-0.060 Sum_probs=138.2
Q ss_pred CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEE-EeeCCCcEEEEECCCC----eEEEEeecCCCcEEEEEEe
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLL-TCGVEEAVRRWDVSSG----NCLHVYEKAGLGLVSCGWH 327 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~ 327 (540)
..|+..++.... .. .+......+..|+|++.+..|+ +-...+.|+.+++... .....+.........|++.
T Consensus 404 ~~Ir~i~l~~~~-~~---~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 404 HEVRKMTLDRSE-YT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp SSEEEECTTSCC-CE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cceeEeeccCCc-ce---eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 456666665332 11 1223455678999998555544 4445678888888652 2233333334456789999
Q ss_pred cCCCEEEEE-eCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec-C-CeEEEEECCCceEEEee--cCCc
Q 009188 328 PDRKWIFSG-ANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK-E-SALLLLDREAKVERYIE--EDQT 402 (540)
Q Consensus 328 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~--~~~~ 402 (540)
+.+..|+.+ ...+.|.+.++++.....+..........|+++|.+..|+.... . +.|...++.......+. .-..
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~ 559 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 559 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence 877555554 45678999999876665555444456899999998766666553 3 78999998876643332 2357
Q ss_pred eeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeCC--cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc
Q 009188 403 ITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKGH--KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 403 i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
...|++++.+..|+.+. ..+.|..+++.+.. ........ -.....+.. ..+.++++-...+.|...|..+|+
T Consensus 560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~~~l~~P~glav----~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEE----ETTEEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEEecCCCeEEEEeCCCCcEEEEecCCCc-eEEEecCCCccCCCCEEEE----eCCEEEEEECCCCEEEEEeCCCCc
Confidence 88999998776666654 45689999987652 22222221 122223322 133555555666788888877776
Q ss_pred eeEeec
Q 009188 480 LIGALP 485 (540)
Q Consensus 480 ~~~~~~ 485 (540)
.+..+.
T Consensus 635 ~~~~l~ 640 (791)
T 3m0c_C 635 DVNLLA 640 (791)
T ss_dssp CCEEEE
T ss_pred ceEEee
Confidence 665554
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.29 E-value=0.00075 Score=60.06 Aligned_cols=201 Identities=10% Similarity=0.117 Sum_probs=127.0
Q ss_pred EeecCCCcEEEEEEecCCCEEE-EEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 313 VYEKAGLGLVSCGWHPDRKWIF-SGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
.+.+-...+..++|+|+++.|+ +...++.|...|..+................+++.+++.++++.-.++.+.++++..
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 3445556799999999766555 577788999999985555444333335688899998887767766778888887654
Q ss_pred ce----EEEe-------ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC--ceeeeEeeC-------CcCCeeEEEe
Q 009188 392 KV----ERYI-------EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE--VKLVAKYKG-------HKRSRFVIRS 451 (540)
Q Consensus 392 ~~----~~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~-------~~~~~~~i~~ 451 (540)
.. .... ..+.....++++|.++.|+++.......+|.+... ...+..... .......+
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l-- 178 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA-- 178 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE--
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE--
Confidence 32 1111 12344689999999988888777666666666421 011111110 11111222
Q ss_pred eeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCC---------CCeEEEEeCCCCCCEEEEEeCCCcEEEecC
Q 009188 452 CFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHS---------GAVNCVSWNPANPHMLASASDDRTIRIWGL 518 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~ 518 (540)
.+.+..+.+++....+..+.++|.. |+.+..+.-.. ...-.|+|.++|. ++++ +.-..++.+.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEEe
Confidence 2324567788888888899999965 55655443211 2568999999995 5555 66665555543
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.27 E-value=0.00049 Score=67.23 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=114.6
Q ss_pred CcEEEEEEecC--CCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC---Cc-EEEEEC
Q 009188 232 DEVWFLQFSHN--GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE---EA-VRRWDV 305 (540)
Q Consensus 232 ~~V~~~~~sp~--g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~-i~iwd~ 305 (540)
.....++|+|+ +..|+.+...+.|+.++...+ . ...+.........++|+++|+++++.... .. +...+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~-v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---Y-VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---E-EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC---E-EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 34678999984 344555544478888887543 2 22334455668999999999944443311 11 333332
Q ss_pred CCCeE-EEEeecCCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceE-EEee-ccccceEEEEEEccCCCEEEEEe-c
Q 009188 306 SSGNC-LHVYEKAGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKEL-ECWK-GQRTLKISDLEVTSDGKQIITMC-K 380 (540)
Q Consensus 306 ~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~l~~~~-~ 380 (540)
..+.. ...+. .......++++| ++..+++-..++.|+.+|..++.. .... .........++++|+++.|+.+. .
T Consensus 215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred CCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 22111 11121 223446688899 665555555677899999875554 2222 11122234699999999655554 5
Q ss_pred CCeEEEEECCC--ce----EEEeec---------------CCceeEEEE---------cCCCCEEEEEecCCeEEEEEec
Q 009188 381 ESALLLLDREA--KV----ERYIEE---------------DQTITSFSL---------SRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 381 d~~i~~~d~~~--~~----~~~~~~---------------~~~i~~~~~---------s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
.+.|..++... .. ...... -.....+++ .+++.++++-..++.|+.++..
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence 68899988652 21 111111 123567888 7777777777778889988853
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.00051 Score=64.02 Aligned_cols=222 Identities=10% Similarity=0.029 Sum_probs=133.7
Q ss_pred CCcEEEEECCCCe--EEEEeecCCCcEEEEEEecCCCEEEEE-eCCCcEEEEecCCceE-EEeeccccceEEEEEEccCC
Q 009188 297 EEAVRRWDVSSGN--CLHVYEKAGLGLVSCGWHPDRKWIFSG-ANDKSICMWELGGKEL-ECWKGQRTLKISDLEVTSDG 372 (540)
Q Consensus 297 dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~ 372 (540)
...|+..++.... ....+.. ...+..++|++.+..|+.+ ...+.|..+++.+... .............+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4668888987653 2222222 2356789999865555544 4567899999876532 11111222346678898755
Q ss_pred CEE-EEEecCCeEEEEECCCceE-EEe-ecCCceeEEEEcCCCCEEEEEec--CCeEEEEEecCCceeeeEeeCCcCCee
Q 009188 373 KQI-ITMCKESALLLLDREAKVE-RYI-EEDQTITSFSLSRDNKFLLVNLL--NQEIHLWNIEGEVKLVAKYKGHKRSRF 447 (540)
Q Consensus 373 ~~l-~~~~~d~~i~~~d~~~~~~-~~~-~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~ 447 (540)
..+ ++-...+.|.+++..+... ... ........++++|.+..++.+.. .+.|..+++.+.... ......-....
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~l~~Pn 169 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPN 169 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEEECCCCCcc
Confidence 544 4545678899999887542 222 34456789999997766666653 577888887654221 11111111112
Q ss_pred EEEeeeccC-CCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 448 VIRSCFGGL-EQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 448 ~i~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
.+ ++ ++ ++.+.++-+..+.|..+|+..........+......++++.. + .++++-...+.|..++..+++...
T Consensus 170 gl--av-d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~-~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 170 GL--TL-DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp EE--EE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCE
T ss_pred EE--EE-eccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-C-EEEEEecCCCeEEEEECCCCCceE
Confidence 22 22 55 445555556678899999865443333333445667888753 3 477777777889999987776543
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.20 E-value=0.0012 Score=60.47 Aligned_cols=205 Identities=7% Similarity=0.055 Sum_probs=129.1
Q ss_pred cCCCCCeEEEEECcCCCeEEEee-CCCcEEEEECCCCeEEEEeecC-------CCcEEEEEE---ecCCCEEEEEeC---
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCG-VEEAVRRWDVSSGNCLHVYEKA-------GLGLVSCGW---HPDRKWIFSGAN--- 338 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~~--- 338 (540)
....-..-+++|++....+..++ ..++|..||...+......... ...+..+.| .|+++.+++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 34444456789988655665555 7899999998766544332211 114678999 688777765442
Q ss_pred ----------CCcEEEEecC---CceEEEeecc-------------ccceEEEEEEccCCCEEEEEecC-CeEEEEECCC
Q 009188 339 ----------DKSICMWELG---GKELECWKGQ-------------RTLKISDLEVTSDGKQIITMCKE-SALLLLDREA 391 (540)
Q Consensus 339 ----------dg~i~iwd~~---~~~~~~~~~~-------------~~~~v~~i~~~~~~~~l~~~~~d-~~i~~~d~~~ 391 (540)
+..|..+|+. +++......- ......+++..++|+..++++.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999998 5444322210 11358899999999999999998 9999999887
Q ss_pred ceEE-Eeec------CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee--CC---cCCeeEEEeeeccCCCc
Q 009188 392 KVER-YIEE------DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK--GH---KRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 392 ~~~~-~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~~~ 459 (540)
.... +... ....+.|+++|+|+.|++....|.+..+|+........... +. -.....+ .....+|+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgi--lp~~~~G~ 246 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKI--VTVPVGNE 246 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEE--EEEEETTE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccc--cccccCCE
Confidence 6422 2111 12367999999999999987799999999884322001111 21 1111122 11123666
Q ss_pred E-EEEeeCCCcEEEEECCCCc
Q 009188 460 F-IASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 460 ~-l~s~s~dg~i~iwd~~~~~ 479 (540)
. +++.+..+.+.+.+...++
T Consensus 247 vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEEEEETTEEEEEECSSTTS
T ss_pred EEEEEcCCCCEEEEECCCCcc
Confidence 6 5555556666666654433
No 290
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.16 E-value=0.0021 Score=60.83 Aligned_cols=223 Identities=10% Similarity=0.070 Sum_probs=120.9
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEE--EEee---cCCCcEEEEEEecC---CCEEEEEeCC------Cc
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCL--HVYE---KAGLGLVSCGWHPD---RKWIFSGAND------KS 341 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~~v~~~~~~~~---~~~l~~~~~d------g~ 341 (540)
-.....++|.|+|+++++ ..+|.|.+++ +++.. ..+. ........++++|+ +..|+++... +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345779999999985554 5669999998 55432 2111 12346889999998 5566555432 56
Q ss_pred EEEEecCCceE------EE-ee--ccccceEEEEEEccCCCEEEEEec-------------CCeEEEEECCCc-------
Q 009188 342 ICMWELGGKEL------EC-WK--GQRTLKISDLEVTSDGKQIITMCK-------------ESALLLLDREAK------- 392 (540)
Q Consensus 342 i~iwd~~~~~~------~~-~~--~~~~~~v~~i~~~~~~~~l~~~~~-------------d~~i~~~d~~~~------- 392 (540)
|..++..+..+ .. .. .........++|.|||..+++.+. .+.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 88888764311 11 11 111123468999999977666432 256777776541
Q ss_pred ------e-EEEeecCCceeEEEEcC-CCCEEEEEecCCeE------EEEEecCCc-----------------eeeeEeeC
Q 009188 393 ------V-ERYIEEDQTITSFSLSR-DNKFLLVNLLNQEI------HLWNIEGEV-----------------KLVAKYKG 441 (540)
Q Consensus 393 ------~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i------~i~d~~~~~-----------------~~~~~~~~ 441 (540)
. ............++|+| ++.++++-...+.+ .+.-+..+. .+...+..
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 266 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ 266 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence 1 11111223467789999 56655554433331 122222111 11112211
Q ss_pred CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCce------eEeecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 442 HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDL------IGALPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 442 ~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
+.. ...+ .+ .+|.++++.-..+.|...++..... ...+-.-...+.++++.|+|. ++++.
T Consensus 267 ~~a-p~G~--~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~~ 332 (352)
T 2ism_A 267 GFP-PGNL--AF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-LYVTT 332 (352)
T ss_dssp CCC-EEEE--EE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-EEEEE
T ss_pred CCC-Ccce--EE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-EEEEE
Confidence 111 1112 22 2566666665666777777654321 122212236789999999996 55554
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.13 E-value=0.0006 Score=62.48 Aligned_cols=159 Identities=10% Similarity=0.079 Sum_probs=111.8
Q ss_pred cEEEEEEecCCCeEEEEe-CCCcEEEEEeecCCceEEEEEecC----CCC--CeEEEEE---CcCCCeEEEee-------
Q 009188 233 EVWFLQFSHNGKYLASSS-NDRSAIIWEVDLNGGVTLKHKLSG----HQK--PVSCVSW---SSDDQQLLTCG------- 295 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~----h~~--~v~~l~~---s~~~~~l~s~~------- 295 (540)
---+++|++....|..++ ..++|..|+...+ ..... .+.+ ... .+..|.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~-~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ-SHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTC-CEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCC-eEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 344789988666666666 7899999987633 22222 3332 111 3679999 68877777543
Q ss_pred ------CCCcEEEEECC---CCeEEEEeec-------------CCCcEEEEEEecCCCEEEEEeCC-CcEEEEecCCceE
Q 009188 296 ------VEEAVRRWDVS---SGNCLHVYEK-------------AGLGLVSCGWHPDRKWIFSGAND-KSICMWELGGKEL 352 (540)
Q Consensus 296 ------~dg~i~iwd~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~ 352 (540)
.+..+..+|+. +++.+....- .......++..++|+..++++.. +.|...+..+...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 15779999998 7877655541 11357899999999999999988 8888888876644
Q ss_pred EEeecc-----ccceEEEEEEccCCCEEEEEecCCeEEEEECCCce
Q 009188 353 ECWKGQ-----RTLKISDLEVTSDGKQIITMCKESALLLLDREAKV 393 (540)
Q Consensus 353 ~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~ 393 (540)
..+... .....+.|+++|+|+.|++....+.+..+|+....
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv 217 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY 217 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc
Confidence 433311 11236689999999999999889999999988543
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.09 E-value=0.0077 Score=61.68 Aligned_cols=231 Identities=10% Similarity=-0.031 Sum_probs=144.0
Q ss_pred eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEEEEECCCCeEEEEeecCCCcEEE
Q 009188 245 YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVRRWDVSSGNCLHVYEKAGLGLVS 323 (540)
Q Consensus 245 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 323 (540)
+|+.+. .+.|+..+++... ......+ ..-..+..++|++.+..|+.+ ..++.|..+++........+.........
T Consensus 8 ~Ll~s~-~~~I~~i~l~~~~-~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFSR-RADIRRISLETNN-NNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEEE-TTEEEEEESSCTT-CEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEEe-CCcEEEEECCCCC-cceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 455443 4678888887432 1211111 223568899999876665554 45788999998655444444333345678
Q ss_pred EEEecCCCEEEEE-eCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec--CCeEEEEECCCce-EEEeec
Q 009188 324 CGWHPDRKWIFSG-ANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK--ESALLLLDREAKV-ERYIEE 399 (540)
Q Consensus 324 ~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~~d~~~~~-~~~~~~ 399 (540)
+++++.+..|+.+ ...+.|.+.++++................++++|....++.... .+.|...++.... ......
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~ 164 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN 164 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC
Confidence 8998766655554 45678999999775544444334456899999986666665552 5788888887755 333445
Q ss_pred CCceeEEEEcCCCCEEEEEe-cCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC
Q 009188 400 DQTITSFSLSRDNKFLLVNL-LNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 400 ~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 478 (540)
......++++++++.|..+. ..+.|..+|+.+... ..+.........+.. . .+.++++-...+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav---~-~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQ---Y-QDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEE---E-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEE---E-CCEEEEecCCCCEEEEEECCCC
Confidence 56788999999876666654 467899999876533 222222222233332 1 2455555556788888887776
Q ss_pred ceeEee
Q 009188 479 DLIGAL 484 (540)
Q Consensus 479 ~~~~~~ 484 (540)
+....+
T Consensus 239 ~~~~~l 244 (628)
T 4a0p_A 239 QNRTII 244 (628)
T ss_dssp CSCEEE
T ss_pred CceEEE
Confidence 544433
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.08 E-value=0.011 Score=60.56 Aligned_cols=284 Identities=8% Similarity=-0.020 Sum_probs=151.5
Q ss_pred CcEEEEEEecCCCeEE-EEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC--CCcEEEEECCCC
Q 009188 232 DEVWFLQFSHNGKYLA-SSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV--EEAVRRWDVSSG 308 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~ 308 (540)
.....+++.+.+..|+ +-...+.|.+.+.+... ... .....-.....|++.|.+..|+.+.. .+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~--l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE--EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEE--EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence 5788999999655554 44556889998876331 111 22234456778999987665555543 356766776433
Q ss_pred eEEEEeecCCCcEEEEEEecCCCEEEEEe-CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEE
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRKWIFSGA-NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLL 387 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~ 387 (540)
.........-.....+++++++..|+.+. ..+.|...|+.+................+++..+ ..+++-...+.|...
T Consensus 161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~ 239 (619)
T 3s94_A 161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC 239 (619)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEE
T ss_pred ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEE
Confidence 33333333445678999999777776664 4567999999775544433222223345666554 334444456778888
Q ss_pred ECCCce--EEEee-----------cC--------------CceeEEEE-----------cC-------CC--------CE
Q 009188 388 DREAKV--ERYIE-----------ED--------------QTITSFSL-----------SR-------DN--------KF 414 (540)
Q Consensus 388 d~~~~~--~~~~~-----------~~--------------~~i~~~~~-----------s~-------~~--------~~ 414 (540)
|..++. ..... |. +....+|+ .| ++ .+
T Consensus 240 d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~ 319 (619)
T 3s94_A 240 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL 319 (619)
T ss_dssp ESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE
T ss_pred ECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceE
Confidence 865432 11000 00 00111111 11 11 12
Q ss_pred EEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEE
Q 009188 415 LLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCV 494 (540)
Q Consensus 415 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 494 (540)
|+.+ ..+.|+..++.........+. ...-...+...+...++.++++-...+.|+.++.........+...-.....+
T Consensus 320 Ll~~-~~~~i~~i~l~~~~~~~~~~~-~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~Gl 397 (619)
T 3s94_A 320 LLLA-RRTDLRRISLDTPDFTDIVLQ-LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGI 397 (619)
T ss_dssp EEEE-ESSCEEEEESSSTTCCCEECC-CSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEE-cccceEEEecCCCccceeEEe-ccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCce
Confidence 2222 234555555544311111111 01111123333323345555555567888888877644433333333567788
Q ss_pred EeCCCCCCEEEEEeCCCcEEEecCCCC
Q 009188 495 SWNPANPHMLASASDDRTIRIWGLKDL 521 (540)
Q Consensus 495 ~~~~~~~~~l~s~~~Dg~i~iw~~~~~ 521 (540)
++.+.+.+++++-+..+.|.+.++...
T Consensus 398 AvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 398 AVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 887655557777777888999888754
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.07 E-value=0.0038 Score=65.51 Aligned_cols=202 Identities=12% Similarity=0.053 Sum_probs=124.7
Q ss_pred CcCcEEEEEEecCCCeEE-EEeCCCcEEEEEeecCCc-eEEEEEecCCCCCeEEEEECcCCCeEE-EeeCCCcEEEEECC
Q 009188 230 HTDEVWFLQFSHNGKYLA-SSSNDRSAIIWEVDLNGG-VTLKHKLSGHQKPVSCVSWSSDDQQLL-TCGVEEAVRRWDVS 306 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~-tg~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~ 306 (540)
....+..++|++.+..|+ +-...+.|+.++++.... ......+.........|++.+.+..|+ +-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345677899998555554 444567788888763211 011222333445567888887765554 44567889999986
Q ss_pred CCeEEEEeecCCCcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCe
Q 009188 307 SGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESA 383 (540)
Q Consensus 307 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~ 383 (540)
.......+.........|+++|.+..|+.+.. .+.|...++.+.....+..........|++++.+..|+.+. ..+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 55444444344456889999997667766653 26799999987666655555445789999998777776665 5578
Q ss_pred EEEEECCCceEEEe-ec---CCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 384 LLLLDREAKVERYI-EE---DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 384 i~~~d~~~~~~~~~-~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
|..+++.......+ .. -....+|++.. +.++++-...+.|...|..++
T Consensus 582 I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 582 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 99999877552222 21 12344555532 234444445667777775444
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.00079 Score=65.98 Aligned_cols=193 Identities=10% Similarity=0.084 Sum_probs=110.6
Q ss_pred cEEEEEEec-CCCeEEEE-eCCCcEEEEEeecCCceEEEEEecC---CCCCeEEEEE-------CcCCCeEEEeeCCC--
Q 009188 233 EVWFLQFSH-NGKYLASS-SNDRSAIIWEVDLNGGVTLKHKLSG---HQKPVSCVSW-------SSDDQQLLTCGVEE-- 298 (540)
Q Consensus 233 ~V~~~~~sp-~g~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~-------s~~~~~l~s~~~dg-- 298 (540)
....|+|+| ++..|+.+ ...+.|++.|...+ .+...... .......++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 467899998 34444444 44456777776533 22222222 1235899999 99999777666544
Q ss_pred -----cEEEEECCC-CeEE-----EEeecCCCcEEEEEEecCC-CEEEEEeCCCcEEEEecC-------CceE-------
Q 009188 299 -----AVRRWDVSS-GNCL-----HVYEKAGLGLVSCGWHPDR-KWIFSGANDKSICMWELG-------GKEL------- 352 (540)
Q Consensus 299 -----~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~-------~~~~------- 352 (540)
.|.+.+... |... ..+... .....++++|++ .++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255665333 2221 222221 233567889954 445555667789999987 4443
Q ss_pred ------EEeeccccceEEEEEEccCCCEEEEE-ecCCeEEEEECCC--ce----EEEeec---C------------Ccee
Q 009188 353 ------ECWKGQRTLKISDLEVTSDGKQIITM-CKESALLLLDREA--KV----ERYIEE---D------------QTIT 404 (540)
Q Consensus 353 ------~~~~~~~~~~v~~i~~~~~~~~l~~~-~~d~~i~~~d~~~--~~----~~~~~~---~------------~~i~ 404 (540)
.............++++|+|+.++.+ +....|+.++... .. ..+... . ....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 11222223356789999999965544 5677888866433 22 112111 0 1233
Q ss_pred -EEEEc-------CCCCEEEEEecCCeEEEEEe
Q 009188 405 -SFSLS-------RDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 405 -~~~~s-------~~~~~l~~~~~dg~i~i~d~ 429 (540)
.++.. +++.++++-..++.|+.++.
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 45554 45666666667788888884
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.05 E-value=0.016 Score=59.20 Aligned_cols=199 Identities=7% Similarity=-0.033 Sum_probs=122.5
Q ss_pred cCcEEEEEEecCCCeEEEEe-CCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEe-eCCCcEEEEECCCC
Q 009188 231 TDEVWFLQFSHNGKYLASSS-NDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTC-GVEEAVRRWDVSSG 308 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~ 308 (540)
-..+..++|++.+..|+.+. ..+.|..++++.... ....+.........+++.+.+..|+.+ ...+.|.+.++...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc--eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 44577999999776666554 457788887763311 122233333578899999865555444 56788999998654
Q ss_pred eEEEEeecCCCcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEE
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESALL 385 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~ 385 (540)
.........-.....++++|.+..|+.+.. .+.|...++++................+++++++..|+.+. ..+.|.
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 433333344455778999997666666653 46788888876555444433445788999999776666554 567899
Q ss_pred EEECCCceEEEee--cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 386 LLDREAKVERYIE--EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 386 ~~d~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
.+|..+....... .......+++..+ ..+++-...+.|...|..++
T Consensus 197 ~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 197 KSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred EecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 9998775532221 2223456677655 44444445677888876543
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.03 E-value=0.0035 Score=57.97 Aligned_cols=195 Identities=14% Similarity=0.224 Sum_probs=125.1
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC----CC---EEEEEeC---CCcEEEEec--CCceEEE
Q 009188 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPD----RK---WIFSGAN---DKSICMWEL--GGKELEC 354 (540)
Q Consensus 287 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~iwd~--~~~~~~~ 354 (540)
....++.....+-+.+||+ +|+.+..+.. ..+..+..-|+ |+ .+++... +++|.+|++ .++.+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456666677788999999 8998888754 45666666652 22 2334443 468999977 4455444
Q ss_pred eecc-----cc-ceEEEEEE--ccC-CC-EEEEEecCCeEEEEECCC--------ceEEEeecCCceeEEEEcCCCCEEE
Q 009188 355 WKGQ-----RT-LKISDLEV--TSD-GK-QIITMCKESALLLLDREA--------KVERYIEEDQTITSFSLSRDNKFLL 416 (540)
Q Consensus 355 ~~~~-----~~-~~v~~i~~--~~~-~~-~l~~~~~d~~i~~~d~~~--------~~~~~~~~~~~i~~~~~s~~~~~l~ 416 (540)
.... .. ..+..+++ ++. +. ++++...+|.+..|++.. +..+.+.....+..+...+....|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 4221 11 35666777 664 44 577888899999988732 1245566678899999999999999
Q ss_pred EEecCCeEEEEEecCC----ceeeeEee-CCc-CCeeEEEeeeccCCCc-EEEEee-CCCcEEEEECC-CCceeEeec
Q 009188 417 VNLLNQEIHLWNIEGE----VKLVAKYK-GHK-RSRFVIRSCFGGLEQA-FIASGS-EDSQVYIWHRA-SCDLIGALP 485 (540)
Q Consensus 417 ~~~~dg~i~i~d~~~~----~~~~~~~~-~~~-~~~~~i~~~~~~~~~~-~l~s~s-~dg~i~iwd~~-~~~~~~~~~ 485 (540)
++-.+..|..|+.+.. ...+..+. ++- .....+.... .++++ +|++++ .+++..+||.. +.+.+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~-~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY-AADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE-CGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9999877777775422 13444442 211 2344454432 33444 555544 67799999996 677777764
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.00 E-value=0.0056 Score=57.28 Aligned_cols=231 Identities=10% Similarity=0.031 Sum_probs=122.5
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC 310 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 310 (540)
...+.++.|+| +..++ ++.+|.|.. ..+.+...........+.+.+..+.+.+++..++++ .++.|.. ....|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44688999986 44444 445564432 223233333322111234567888887777666655 4554422 1223433
Q ss_pred EEEe-ecCCCcEEEEEEecCCCEEEEEeCCCcEEE-EecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEE
Q 009188 311 LHVY-EKAGLGLVSCGWHPDRKWIFSGANDKSICM-WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLD 388 (540)
Q Consensus 311 ~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d 388 (540)
-... ......+..+.+.+++..++++. +|.+.. .|-.+.............+..+.+.+++..+ .++.+|.+++.+
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSD 231 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEec
Confidence 2222 23455788999999887776664 454433 4432222222223334578889999988755 555678877764
Q ss_pred CCCce-EEEee-----cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeC---CcCCeeEEEeeeccCCCc
Q 009188 389 REAKV-ERYIE-----EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKG---HKRSRFVIRSCFGGLEQA 459 (540)
Q Consensus 389 ~~~~~-~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~ 459 (540)
..... -.... ....+.++.+.+++..++++. +|.+ ++....+ ..-..... .....+.+.+ ..++
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~---~~~~- 304 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILF---FSPD- 304 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEE---EETT-
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEE---ECCC-
Confidence 33222 11111 123578899998877666655 6666 3333333 22222221 1223333333 2333
Q ss_pred EEEEeeCCCcEEEEEC
Q 009188 460 FIASGSEDSQVYIWHR 475 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd~ 475 (540)
.+++++.+|.|.-++-
T Consensus 305 ~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 305 QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEECSTTEEEEECC
T ss_pred ceEEEcCCceEEEEcC
Confidence 4556667888777653
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.97 E-value=0.011 Score=55.92 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=126.1
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe-EEEEee---cCCCcEEEEEEecC---CCEEEEEeC----C----C
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN-CLHVYE---KAGLGLVSCGWHPD---RKWIFSGAN----D----K 340 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g 340 (540)
-.....++|.|+|+++++ ..+|.|++++ .+++ .+..+. ........++++|+ +..|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999985554 5669999997 4565 222211 12346889999997 555655443 2 5
Q ss_pred cEEEEecCCc--e---EEE----eeccccceEEEEEEccCCCEEEEEec-------------CCeEEEEECCCc------
Q 009188 341 SICMWELGGK--E---LEC----WKGQRTLKISDLEVTSDGKQIITMCK-------------ESALLLLDREAK------ 392 (540)
Q Consensus 341 ~i~iwd~~~~--~---~~~----~~~~~~~~v~~i~~~~~~~~l~~~~~-------------d~~i~~~d~~~~------ 392 (540)
.|..|+.... . ... ...........++|.|||..+++.+. .|.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777877543 1 111 11111223567999999987776432 256777776543
Q ss_pred ---eEEEeecCCceeEEEEcC-CCCEEEEEecCC---eEEEEEecCC---------------ceeeeEe-eCCcCCeeEE
Q 009188 393 ---VERYIEEDQTITSFSLSR-DNKFLLVNLLNQ---EIHLWNIEGE---------------VKLVAKY-KGHKRSRFVI 449 (540)
Q Consensus 393 ---~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg---~i~i~d~~~~---------------~~~~~~~-~~~~~~~~~i 449 (540)
...+.........++|+| +++++++-...+ .|.+..-... ..++..+ ..+. ....+
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~-ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW-APSGA 264 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC-CEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc-CCcce
Confidence 111222233457899999 666555543322 2333221110 0111222 1111 11122
Q ss_pred Eee----eccCCCcEEEEeeCCCcEEEEECCCC-cee--Eee-cCCCCCeEEEEeCCCCCCEEEEEe
Q 009188 450 RSC----FGGLEQAFIASGSEDSQVYIWHRASC-DLI--GAL-PGHSGAVNCVSWNPANPHMLASAS 508 (540)
Q Consensus 450 ~~~----~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~--~~~-~~h~~~v~~l~~~~~~~~~l~s~~ 508 (540)
.+. +-..+|.++++.-..+.|...++... +.. ..+ .+-...+.++++.|+|. ++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEEEe
Confidence 221 00246777777767778888887753 332 222 23346789999999996 666653
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.94 E-value=0.029 Score=61.62 Aligned_cols=284 Identities=13% Similarity=0.078 Sum_probs=151.2
Q ss_pred cCcEEEEEEecC------CCeEEEEeC-CCcEEEEEeecCCceEEEEEecCCCCCeEEEEEC--cCCCeEEEeeCCCcEE
Q 009188 231 TDEVWFLQFSHN------GKYLASSSN-DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS--SDDQQLLTCGVEEAVR 301 (540)
Q Consensus 231 ~~~V~~~~~sp~------g~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~ 301 (540)
.+.|.|+++.|. ++++|.|.. |++++|++++.-.. .....+.. .....++.+. ....+|..|-.||.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-LHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-EEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-EEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 468999999863 468999996 99999999974321 12222321 2344455443 2345788888999876
Q ss_pred EEEC--CCCeEEEE--eecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEE-EEEEccC--CCE
Q 009188 302 RWDV--SSGNCLHV--YEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKIS-DLEVTSD--GKQ 374 (540)
Q Consensus 302 iwd~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~--~~~ 374 (540)
-+.+ .+|..... ..-...++.-..+...+..-+.+..+....++.-++.-... ......+. ...|+.. ..-
T Consensus 631 ~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s--~l~~~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFS--NVNLKEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEE--EBSSSCCCEEEEECCSSSTTE
T ss_pred EEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEe--ccChHHhceEeccCcccCCCc
Confidence 5544 45554322 11223344444444444333333334444444433321111 11111222 2233322 234
Q ss_pred EEEEecCCeEEEEECCCc---eEEEeecCCceeEEEEcCCCCEEEEEecC------------------------------
Q 009188 375 IITMCKESALLLLDREAK---VERYIEEDQTITSFSLSRDNKFLLVNLLN------------------------------ 421 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------------------ 421 (540)
++..+ ++.+++..+..- ......-...+..++++|..+.++++..+
T Consensus 709 ~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 709 LALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 44433 455887776432 25555667788899999987766554422
Q ss_pred -------------------CeEEEEEecCCceeeeEeeCCc-CCeeEEEeeeccC-CCcEEEEee----------CCCcE
Q 009188 422 -------------------QEIHLWNIEGEVKLVAKYKGHK-RSRFVIRSCFGGL-EQAFIASGS----------EDSQV 470 (540)
Q Consensus 422 -------------------g~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~s~s----------~dg~i 470 (540)
+.|++.|-.+. ..+..+.-.. ....++..+.+.. ...+++.|+ ..|.|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri 866 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI 866 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence 12444554433 2333332221 2223333333332 357888876 35789
Q ss_pred EEEECCCCcee--EeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 471 YIWHRASCDLI--GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 471 ~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
++|++..+++. +.. ...++|++++-- +| +++++. ..+|++|++...+..+
T Consensus 867 ~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g-~Lla~i--g~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 867 VVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NG-KLLASI--NSTVRLYEWTTEKELR 918 (1158)
T ss_dssp EEEEEETTEEEEEEEE-EESSCEEEEEEE-TT-EEEEEE--TTEEEEEEECTTSCEE
T ss_pred EEEEEECCEEEEEEEE-EcCCcCEEEeee-CC-EEEEEc--CCEEEEEECCCCceEE
Confidence 99998754432 222 246889998743 24 455554 4689999998765443
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.94 E-value=0.003 Score=58.49 Aligned_cols=190 Identities=13% Similarity=0.239 Sum_probs=120.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccC----CC---EEEEEec---CCeEEEEEC--CCceEEE
Q 009188 329 DRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSD----GK---QIITMCK---ESALLLLDR--EAKVERY 396 (540)
Q Consensus 329 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~l~~~~~---d~~i~~~d~--~~~~~~~ 396 (540)
....++.....+.+.+||+.++.+..... ..++.+.+-|+ |+ .+++... +++|.+|++ .+.....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 34567777778899999997666655433 35666666553 22 2333333 578999966 3443333
Q ss_pred ee-------cC-CceeEEEE--cCC-CC-EEEEEecCCeEEEEEecC------CceeeeEeeCCcCCeeEEEeeeccCCC
Q 009188 397 IE-------ED-QTITSFSL--SRD-NK-FLLVNLLNQEIHLWNIEG------EVKLVAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 397 ~~-------~~-~~i~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
.. .. ..+..+|+ +|. ++ ++++...+|.+..|++.. ..+.++++..... ...|...+..
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq----~EgcvvDd~~ 191 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ----TEGMAADDEY 191 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC----EEEEEEETTT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC----cceEEEcCCC
Confidence 31 11 56677888 774 43 688888899999999842 2255666665543 3344446777
Q ss_pred cEEEEeeCCCcEEEEECC-----CCceeEeec-CC-CCCeEEEEe--CCCCC-CEEEEEeCCCcEEEecCC-CCCccc
Q 009188 459 AFIASGSEDSQVYIWHRA-----SCDLIGALP-GH-SGAVNCVSW--NPANP-HMLASASDDRTIRIWGLK-DLNVKR 525 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~l~~--~~~~~-~~l~s~~~Dg~i~iw~~~-~~~~~~ 525 (540)
..|+.+-++.-|..++.. +++.+..+. ++ ...+..|++ .+++. ++++|+-.+.++.+||.. +.+...
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 889999998777777754 345555543 22 246888887 45554 456666577899999996 444433
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.93 E-value=3e-05 Score=80.72 Aligned_cols=236 Identities=8% Similarity=-0.051 Sum_probs=136.0
Q ss_pred CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee-CCCcEEEEECCC----CeEEEEeecCCCcEEEEEEe
Q 009188 253 RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG-VEEAVRRWDVSS----GNCLHVYEKAGLGLVSCGWH 327 (540)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~ 327 (540)
+.|+..++.... .. .+......+..++|++.+..|+.+. ..+.|+.+++.. ......+.........+++.
T Consensus 386 ~~I~~id~~~~~---~~-~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 386 HEVRKMTLDRSE---YT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TC-CEECTTSCC---EE-CCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred cceEEEeCCCCc---ce-eeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 466666665331 11 1222234567889998776666554 457899999875 22222221112234567887
Q ss_pred cCCCEE-EEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec--CCeEEEEECCCceEEEe--ecCCc
Q 009188 328 PDRKWI-FSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK--ESALLLLDREAKVERYI--EEDQT 402 (540)
Q Consensus 328 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~--~~~~~ 402 (540)
+.+..| ++-...+.|.++++.+.....+..........++++|.+..|+.+.. .+.|.++++.......+ .....
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~ 541 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 541 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC
Confidence 644444 44455678999999876655554433345678899987665555443 26788888766442222 22345
Q ss_pred eeEEEEcCCCCEEEE-EecCCeEEEEEecCCceeeeEeeC--CcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc
Q 009188 403 ITSFSLSRDNKFLLV-NLLNQEIHLWNIEGEVKLVAKYKG--HKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD 479 (540)
Q Consensus 403 i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 479 (540)
.+.|+|+|++..|+. -+..+.|..+++.+... ...+.. .......+.. . .+.++++....+.|..+|..+|+
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glav---d-~~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV---F-EDKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEE---E-TTEEEEECSTTTCEEEEETTTEE
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEE---E-CCEEEEEeCCCCeEEEEEccCCC
Confidence 678999997655544 45567899999875421 111111 1111111221 1 23556666677899999988888
Q ss_pred eeEeecCCCCCeEEEEeC
Q 009188 480 LIGALPGHSGAVNCVSWN 497 (540)
Q Consensus 480 ~~~~~~~h~~~v~~l~~~ 497 (540)
.+..+.......++|++.
T Consensus 617 ~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 617 DVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EEECCCTTCSSCCCCCBC
T ss_pred ceEEeecCCCCCcEEEEe
Confidence 887775433344555543
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.89 E-value=0.013 Score=55.39 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=104.6
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec---CCCCCeEEEEECcC---CCeEEEeeC-C-----C
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS---GHQKPVSCVSWSSD---DQQLLTCGV-E-----E 298 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~s~~---~~~l~s~~~-d-----g 298 (540)
-...+.++|.|+|+++++ ..+|.|.+++ + +.......+. ........|+|+|+ +..|..+.. . +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~--g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-E--GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE-T--TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE-C--CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 446789999999985554 5669898887 2 2223322222 22456899999998 555544433 2 5
Q ss_pred cEEEEECCCCe-----EE-EEee---cCCCcEEEEEEecCCCEEEEEeC-------------CCcEEEEecCCc------
Q 009188 299 AVRRWDVSSGN-----CL-HVYE---KAGLGLVSCGWHPDRKWIFSGAN-------------DKSICMWELGGK------ 350 (540)
Q Consensus 299 ~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~------ 350 (540)
.|..++...+. .+ ..+. ........++|.|||...++.+. .|.|.-++.++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 68888876442 11 1132 11123467999999975555432 245666666541
Q ss_pred -------eEEEeeccccceEEEEEEcc-CCCEEEEEecCCe--------EEEEECCCc-----------------eEEEe
Q 009188 351 -------ELECWKGQRTLKISDLEVTS-DGKQIITMCKESA--------LLLLDREAK-----------------VERYI 397 (540)
Q Consensus 351 -------~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~--------i~~~d~~~~-----------------~~~~~ 397 (540)
....+...+ .....++|+| ++..+++-..... |.+...... .....
T Consensus 186 f~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 186 FLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred ccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 111111111 2467789999 5665554433332 333322110 00011
Q ss_pred ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC
Q 009188 398 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG 431 (540)
Q Consensus 398 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 431 (540)
........++| .+|..+++....+.|...++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence 12233456666 4566666655666777777654
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.88 E-value=0.018 Score=54.33 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=108.3
Q ss_pred CcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEec---CCCCCeEEEEECcC---CCeEEEeeC----C--
Q 009188 230 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLS---GHQKPVSCVSWSSD---DQQLLTCGV----E-- 297 (540)
Q Consensus 230 h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~s~~---~~~l~s~~~----d-- 297 (540)
.-...+.++|.|+|++++ +..+|.|++++. .+. .....+. ........|+|+|+ +..|..+.. +
T Consensus 27 ~l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~--~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLV-TERPGRLVLISP--SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp SCSCEEEEEEEETTEEEE-EETTTEEEEECS--SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCCeEEEEcCCCeEEE-EeCCCEEEEEeC--CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 345678999999998444 456698988863 222 3332221 22356899999997 444444432 2
Q ss_pred --CcEEEEECCCC--e-----EE-EEeec-CCCcEEEEEEecCCCEEEEEeC-------------CCcEEEEecCCc---
Q 009188 298 --EAVRRWDVSSG--N-----CL-HVYEK-AGLGLVSCGWHPDRKWIFSGAN-------------DKSICMWELGGK--- 350 (540)
Q Consensus 298 --g~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~--- 350 (540)
..|..|+...+ . .+ ..+.. .......++|.|||.+.++.+. .|.|.-++..+.
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 56777776554 1 11 11221 1123467899999976665432 245666665443
Q ss_pred -----eEEEeeccccceEEEEEEcc-CCCEEEEEecCC---eEEEEECCCc-----------------eEEEe-ecCCce
Q 009188 351 -----ELECWKGQRTLKISDLEVTS-DGKQIITMCKES---ALLLLDREAK-----------------VERYI-EEDQTI 403 (540)
Q Consensus 351 -----~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~---~i~~~d~~~~-----------------~~~~~-~~~~~i 403 (540)
....+...+ .....++|+| ++..+++-.... .|.+...... ..... ......
T Consensus 183 ~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 183 DNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp TSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 111111111 2456789999 566554433222 2333322110 00111 123456
Q ss_pred eEEEEc-------CCCCEEEEEecCCeEEEEEecCC
Q 009188 404 TSFSLS-------RDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 404 ~~~~~s-------~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
..++|. .+|+++++....+.|...++...
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 778883 46777777666778888888753
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.85 E-value=0.0015 Score=60.32 Aligned_cols=230 Identities=9% Similarity=0.015 Sum_probs=118.4
Q ss_pred CCCeEEEee-CC-----CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCC-----CcEEEEecCCce---E
Q 009188 287 DDQQLLTCG-VE-----EAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAND-----KSICMWELGGKE---L 352 (540)
Q Consensus 287 ~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~---~ 352 (540)
++..++.|+ .+ ..+.+||+.+++-...-..........+...++..++.|+.+ ..+.+||..+.. .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 445666666 32 368899988776433211111111111122356677777755 368999987655 3
Q ss_pred EEeeccccceEEEEEEccCCCEEEEEecC-----CeEEEEECCCceEEEee---cCCceeEEEEcCCCCEEEEEecC---
Q 009188 353 ECWKGQRTLKISDLEVTSDGKQIITMCKE-----SALLLLDREAKVERYIE---EDQTITSFSLSRDNKFLLVNLLN--- 421 (540)
Q Consensus 353 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d--- 421 (540)
..............+...++..++.|+.+ ..+.+||..+..-.... ....-.+++. .+++.++.|+.+
T Consensus 94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLN 172 (301)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSC
T ss_pred EECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCc
Confidence 33322111111111222366777777643 46889998887622221 1111122222 267777777654
Q ss_pred --CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-----CcEEEEECCCCceeEe--ecCCCCCeE
Q 009188 422 --QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED-----SQVYIWHRASCDLIGA--LPGHSGAVN 492 (540)
Q Consensus 422 --g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~ 492 (540)
..+..||..+. .-. .............++ ..++.+++.|+.+ ..+.+||..+.+-... +........
T Consensus 173 ~~~~~~~~d~~~~-~W~-~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 248 (301)
T 2vpj_A 173 ILNSVEKYDPHTG-HWT-NVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG 248 (301)
T ss_dssp BCCCEEEEETTTT-EEE-EECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred ccceEEEEeCCCC-cEE-eCCCCCcccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence 45888998765 221 111111111111111 1256777778764 4689999887654322 221111222
Q ss_pred EEEeCCCCCCEEEEEeCC-----CcEEEecCCCCCcc
Q 009188 493 CVSWNPANPHMLASASDD-----RTIRIWGLKDLNVK 524 (540)
Q Consensus 493 ~l~~~~~~~~~l~s~~~D-----g~i~iw~~~~~~~~ 524 (540)
.+.+ ++ .+++.||.+ ..|.+||+.+.+-.
T Consensus 249 ~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 249 ATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 3333 45 478888766 35788998876543
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.79 E-value=0.002 Score=59.46 Aligned_cols=229 Identities=11% Similarity=0.056 Sum_probs=115.6
Q ss_pred CCCeEEEEe-CC-----CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC-----CcEEEEECCCCe-
Q 009188 242 NGKYLASSS-ND-----RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE-----EAVRRWDVSSGN- 309 (540)
Q Consensus 242 ~g~~l~tg~-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~- 309 (540)
++.+++.|+ .+ ..+.+||..+. .......+.........+. .++..++.|+.+ ..+.+||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344556665 22 35778877643 2222211221111222222 356777777755 468999998766
Q ss_pred --EEEEee--cCCCcEEEEEEecCCCEEEEEeCCC-----cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec
Q 009188 310 --CLHVYE--KAGLGLVSCGWHPDRKWIFSGANDK-----SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 310 --~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
-...-. ........+. .++..++.|+.++ .+.+||+.+.................+...+++.++.|+.
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred CeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 332211 1111122222 2566777776543 5889998776654433222111111122236777777765
Q ss_pred C-----CeEEEEECCCceEEEeec-C-CceeEEEEcCCCCEEEEEecC-----CeEEEEEecCCceeeeEeeCCcCCeeE
Q 009188 381 E-----SALLLLDREAKVERYIEE-D-QTITSFSLSRDNKFLLVNLLN-----QEIHLWNIEGEVKLVAKYKGHKRSRFV 448 (540)
Q Consensus 381 d-----~~i~~~d~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~ 448 (540)
+ ..+.+||..+..-..... . ......+..-+++.++.|+.+ ..+.+||+.+. .-. .+.........
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~-~~~~~p~~r~~ 246 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD-SWT-TVTSMTTPRCY 246 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT-EEE-EECCCSSCCBS
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC-cEE-ECCCCCCcccc
Confidence 4 458899998877333221 1 111111222256777777764 46889998765 221 11111111111
Q ss_pred EEeeeccCCCcEEEEeeCC-----CcEEEEECCCCc
Q 009188 449 IRSCFGGLEQAFIASGSED-----SQVYIWHRASCD 479 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 479 (540)
..++ ..++++++.|+.+ ..+.+||..+.+
T Consensus 247 ~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 247 VGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred eeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1111 1256777777765 357788876644
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.76 E-value=0.022 Score=51.69 Aligned_cols=262 Identities=8% Similarity=0.115 Sum_probs=160.4
Q ss_pred CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC
Q 009188 252 DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK 331 (540)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (540)
+..|.|-|+...... ..+.+. -. +.-.+|..+.+|.-. ..++.|+|+++.+.++.+.-. ..|.--.|-.+.
T Consensus 48 ~~~VvIiDl~n~~~~-~Rrpi~-Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~- 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNP-IRRPIS-AD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN- 118 (365)
T ss_dssp EEEEEEEETTSTTSC-EEEECC-CS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-
T ss_pred CCEEEEEECCCCCCc-cccccc-cc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-
Confidence 347888888765443 222222 12 234478877777655 678999999999999888664 467777777654
Q ss_pred EEEEEeCCCcEEEEecCC-ceEE-Eeec---cccceEEEEEEccCCCEEEEEec-------CCeEEEEECCCceEEEe-e
Q 009188 332 WIFSGANDKSICMWELGG-KELE-CWKG---QRTLKISDLEVTSDGKQIITMCK-------ESALLLLDREAKVERYI-E 398 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~-~~~~-~~~~---~~~~~v~~i~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~-~ 398 (540)
.|+..+ +..|+-|++.+ .... .+.. -....|..-..+++.++++..+- .|.+.+|..+.+....+ +
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 197 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 197 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECC
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeee
Confidence 444433 34799999964 2222 2222 12357888889999999876552 36788999888774444 3
Q ss_pred cCCceeEEEEcC--C-CCEEEEEec---CCeEEEEEecCC--ce------eeeE-eeCCcCCeeEEEeeeccCCCcEEEE
Q 009188 399 EDQTITSFSLSR--D-NKFLLVNLL---NQEIHLWNIEGE--VK------LVAK-YKGHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 399 ~~~~i~~~~~s~--~-~~~l~~~~~---dg~i~i~d~~~~--~~------~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
|......+.+.. . .+.++.+.. .+.+++.++... .. .+.. +.......+.+.... ++....++.
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv-s~kygviyv 276 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFL 276 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE-ETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe-cccCCEEEE
Confidence 333332222221 1 123333333 258899988432 11 1111 112222333343333 556677888
Q ss_pred eeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 464 GSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 464 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
-+.-|.|++||+.++.++..-+-...+|..-+-+.... =++.....|.|.--.+++..+..
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~-Gi~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGT-EEEEEETTCEEEEEEECTTTHHH
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCC-cEEEEcCCCEEEEEEECcccEeh
Confidence 88999999999999999987776667776555544332 35666688888777777665543
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.75 E-value=0.0044 Score=57.23 Aligned_cols=228 Identities=8% Similarity=0.016 Sum_probs=117.2
Q ss_pred CCeEEEeeCC----CcEEEEECCCCeEEEEeecCCCcE-EEEEEecCCCEEEEEeCCC-----cEEEEecCCceEEEeec
Q 009188 288 DQQLLTCGVE----EAVRRWDVSSGNCLHVYEKAGLGL-VSCGWHPDRKWIFSGANDK-----SICMWELGGKELECWKG 357 (540)
Q Consensus 288 ~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~ 357 (540)
+..++.|+.+ ..+..||+.+.+-...-....... .+++ ..++..++.|+.++ .+.+||..+.+......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 3455555543 358889988776433211111111 1122 22566777777543 58899998776554433
Q ss_pred cccceEEEEEEccCCCEEEEEecCC-----eEEEEECCCceEEEee---cCCceeEEEEcCCCCEEEEEecC-------C
Q 009188 358 QRTLKISDLEVTSDGKQIITMCKES-----ALLLLDREAKVERYIE---EDQTITSFSLSRDNKFLLVNLLN-------Q 422 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-------g 422 (540)
.........+...++..++.|+.++ .+.+||..+..-.... ....-.+++. -+++.++.|+.+ .
T Consensus 95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLS 173 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECC
T ss_pred CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCcccc
Confidence 2221111112223677777777553 5788998887633222 1111122222 256677766542 3
Q ss_pred eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-----CcEEEEECCCCceeE--eecCCCCCeEEEE
Q 009188 423 EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED-----SQVYIWHRASCDLIG--ALPGHSGAVNCVS 495 (540)
Q Consensus 423 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~l~ 495 (540)
.+..||..+. .-.. .............+ ..++.+++.|+.+ ..+.+||..+.+-.. .+.........+.
T Consensus 174 ~~~~yd~~~~-~W~~-~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 174 TVECYNATTN-EWTY-IAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CEEEEETTTT-EEEE-ECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEEEeCCCC-cEEE-CCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 5888998765 2111 11111111111111 2256777888765 368999987754332 2221111112222
Q ss_pred eCCCCCCEEEEEeCCC-----cEEEecCCCCCcc
Q 009188 496 WNPANPHMLASASDDR-----TIRIWGLKDLNVK 524 (540)
Q Consensus 496 ~~~~~~~~l~s~~~Dg-----~i~iw~~~~~~~~ 524 (540)
+ ++ .+++.||.++ .|.+||+.+.+-.
T Consensus 250 ~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 250 V--NG-LLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp E--TT-EEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred E--CC-EEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 3 44 4788887664 4899999876543
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.75 E-value=0.052 Score=55.51 Aligned_cols=193 Identities=7% Similarity=-0.055 Sum_probs=120.7
Q ss_pred CcEEEEEEecCCCeEEEE-eCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeE-EEeeCCCcEEEEECCCCe
Q 009188 232 DEVWFLQFSHNGKYLASS-SNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQL-LTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~ 309 (540)
..+..++|++.+..|+.+ ..++.|..++++.. ... ..+.........+++.+.+..| ++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-~~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGS-ALE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCC-CcE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence 467899999976666544 45678888877633 222 2222223456788888665555 444456789999986543
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEEE
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESALLL 386 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~ 386 (540)
....+...-.....++++|....|+.+.. .+.|...++++........ .......+++++++..|+.+. ..+.|..
T Consensus 114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~ 192 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIES 192 (628)
T ss_dssp CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEE
Confidence 33333234456789999996666666653 4688888887765544443 334788999999877776665 5678999
Q ss_pred EECCCce-EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEe
Q 009188 387 LDREAKV-ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNI 429 (540)
Q Consensus 387 ~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 429 (540)
+|..+.. ............+++.. +..+++-...+.|...|.
T Consensus 193 ~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 193 SNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 9987644 22222333455666654 344444444666666664
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.69 E-value=0.00019 Score=74.67 Aligned_cols=206 Identities=13% Similarity=0.042 Sum_probs=119.2
Q ss_pred CcEEEEEEecCCCeEEEEe-CCCcEEEEEeecCCc-eEEEEEecCCCCCeEEEEECcCC-CeEEEeeCCCcEEEEECCCC
Q 009188 232 DEVWFLQFSHNGKYLASSS-NDRSAIIWEVDLNGG-VTLKHKLSGHQKPVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSG 308 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~-~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~ 308 (540)
..+..++|++.+..|+.+. ..+.|+.++++.... ......+.........|++.+.+ .++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4566889998776666553 457888888763100 00111111112234567887544 44455456778999998655
Q ss_pred eEEEEeecCCCcEEEEEEecCCCEEEEEeC--CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEE-ecCCeEE
Q 009188 309 NCLHVYEKAGLGLVSCGWHPDRKWIFSGAN--DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITM-CKESALL 385 (540)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~d~~i~ 385 (540)
.....+.........++++|.+.+|+.+.. .+.|..+++.+.....+..........|++++++..|+.+ ...+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 444433333345678889987666665543 2678888886544333332233456789999876555544 4667899
Q ss_pred EEECCCce-EEEeec---CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEe
Q 009188 386 LLDREAKV-ERYIEE---DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKY 439 (540)
Q Consensus 386 ~~d~~~~~-~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 439 (540)
.++..+.. ..+... ......+++..+ .++++....+.|..++..++ ..+..+
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G-~~~~~i 621 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG-SDVNLL 621 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE-EEEECC
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC-CceEEe
Confidence 99987644 222221 133445666543 44445555678888886554 333333
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.69 E-value=0.0076 Score=55.58 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=114.7
Q ss_pred CCeEEEEeCC----CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC-----CcEEEEECCCCeEEEE
Q 009188 243 GKYLASSSND----RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE-----EAVRRWDVSSGNCLHV 313 (540)
Q Consensus 243 g~~l~tg~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~ 313 (540)
+.+++.|+.+ ..+.+||.... .......+......-..+.+ ++..++.|+.+ ..+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEE-RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCC-cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3445555533 35777777643 22222222211111122222 67777777754 3588999988764333
Q ss_pred eecC--CCcEEEEEEecCCCEEEEEeCCC-----cEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec------
Q 009188 314 YEKA--GLGLVSCGWHPDRKWIFSGANDK-----SICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK------ 380 (540)
Q Consensus 314 ~~~~--~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------ 380 (540)
-... ......+. -++..++.|+.++ .+.+||+.+.................+...+++.++.|+.
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence 2211 11112222 2566777777654 5788898876655443222111111112235667776654
Q ss_pred -CCeEEEEECCCceEEEee---cCCceeEEEEcCCCCEEEEEecC-----CeEEEEEecCCceeeeEeeCCcCCeeEEEe
Q 009188 381 -ESALLLLDREAKVERYIE---EDQTITSFSLSRDNKFLLVNLLN-----QEIHLWNIEGEVKLVAKYKGHKRSRFVIRS 451 (540)
Q Consensus 381 -d~~i~~~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 451 (540)
...+.+||..+..-.... ....-.+++. -++++++.|+.+ ..+.+||..+. .-. .+...........+
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~-~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN-AWR-QVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT-EEE-EECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC-CEe-eCCCCCCccccCeE
Confidence 245889999887633221 1111122222 266777777764 36889998765 211 11111111111111
Q ss_pred eeccCCCcEEEEeeCCC-----cEEEEECCCCc
Q 009188 452 CFGGLEQAFIASGSEDS-----QVYIWHRASCD 479 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~ 479 (540)
+ ..++.+++.|+.++ .+.+||..+.+
T Consensus 248 ~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 248 C--AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp E--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred E--EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 1 22567777777654 48888887654
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.66 E-value=0.0056 Score=56.62 Aligned_cols=225 Identities=10% Similarity=0.073 Sum_probs=115.9
Q ss_pred eEEEEeCC--CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCC----CcEEEEECCCCeEEEEeecC-
Q 009188 245 YLASSSND--RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE----EAVRRWDVSSGNCLHVYEKA- 317 (540)
Q Consensus 245 ~l~tg~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~- 317 (540)
+++.|+.+ ..+.+||...+ .......+......-..+. -++..++.|+.+ ..+.+||+.+++-...-...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCC-CEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 45556543 56778887643 2222222221122222222 266777777755 56889999887644332211
Q ss_pred -CCcEEEEEEecCCCEEEEEeCC------CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec---------C
Q 009188 318 -GLGLVSCGWHPDRKWIFSGAND------KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK---------E 381 (540)
Q Consensus 318 -~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---------d 381 (540)
......+ .-++..++.|+.+ ..+.+||..+.................+...+++.++.|+. .
T Consensus 91 ~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 1111222 2266677777765 36899999877655443222111111122236666776653 3
Q ss_pred CeEEEEECCCceEEEee-c--CCceeEEEEcCCCCEEEEEecC-----CeEEEEEecCCceeeeEeeCCcCCeeEEEeee
Q 009188 382 SALLLLDREAKVERYIE-E--DQTITSFSLSRDNKFLLVNLLN-----QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCF 453 (540)
Q Consensus 382 ~~i~~~d~~~~~~~~~~-~--~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (540)
..+.+||..+..-.... . ...-.+++.. ++++++.|+.+ ..+.+||+.+. .- ..............++.
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~-~W-~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN-EW-KMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT-EE-EECCCCSCCBSCCEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC-cE-EECCCCCCCccceeEEE
Confidence 55889999887733222 1 1111222222 66777776653 45888998765 21 11111111111111111
Q ss_pred ccCCCcEEEEeeCC-----CcEEEEECCCCc
Q 009188 454 GGLEQAFIASGSED-----SQVYIWHRASCD 479 (540)
Q Consensus 454 ~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 479 (540)
.++.+++.|+.+ ..+.+||..+.+
T Consensus 246 --~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 246 --VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp --ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred --ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 256777777754 468888887654
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.64 E-value=0.018 Score=54.36 Aligned_cols=232 Identities=11% Similarity=0.089 Sum_probs=122.3
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee-------cCCCcEEEEEEecC---CCEEEEEeC--------C
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE-------KAGLGLVSCGWHPD---RKWIFSGAN--------D 339 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~l~~~~~--------d 339 (540)
....|+|.|+|+.|+.+...|.|++++. .+.....+. ........++++|+ +..|+++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 4688999999983445566899999985 443221111 12345689999996 455554432 2
Q ss_pred CcEEEEecCCc-----eEEEee---c---cccceEEEEEEccCCCEEEEEec-------------CCeEEEEECCCc---
Q 009188 340 KSICMWELGGK-----ELECWK---G---QRTLKISDLEVTSDGKQIITMCK-------------ESALLLLDREAK--- 392 (540)
Q Consensus 340 g~i~iwd~~~~-----~~~~~~---~---~~~~~v~~i~~~~~~~~l~~~~~-------------d~~i~~~d~~~~--- 392 (540)
..|..|++... ...... . ........++|.|||..+++.+. .|.|..++....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666766432 111111 1 11123467999999966665543 256777777653
Q ss_pred ----------e-EEEeecCCceeEEEEcC-CCCEEEEEec-CCeEEEEEecCCc--------------------------
Q 009188 393 ----------V-ERYIEEDQTITSFSLSR-DNKFLLVNLL-NQEIHLWNIEGEV-------------------------- 433 (540)
Q Consensus 393 ----------~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~-dg~i~i~d~~~~~-------------------------- 433 (540)
. ..+.........++|+| +++++++-.. ++.=.|.-+..+.
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~ 257 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIV 257 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSC
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCC
Confidence 1 11222234577899999 5555444322 1111221111110
Q ss_pred ----eeeeEeeCCcCCeeEEEeeec----cCCCcEEEEeeCCCcEEEEECCCCceeEe---ecCCCCCeEEEEeCCCCCC
Q 009188 434 ----KLVAKYKGHKRSRFVIRSCFG----GLEQAFIASGSEDSQVYIWHRASCDLIGA---LPGHSGAVNCVSWNPANPH 502 (540)
Q Consensus 434 ----~~~~~~~~~~~~~~~i~~~~~----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~ 502 (540)
.+...+..+. ....+.+... ..++.++++.-..+.|...++..++.+.. +......+..+++.|+|.
T Consensus 258 ~~~~~P~~~~~~~~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~- 335 (353)
T 2g8s_A 258 AGTEQPVFYWKDSP-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY- 335 (353)
T ss_dssp TTSCCCSEEESSCC-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC-
T ss_pred CCccCCeEEeCCCc-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc-
Confidence 0111111111 1111111100 13567777777778888888776544322 222345799999999996
Q ss_pred EEEEEe-CCCc
Q 009188 503 MLASAS-DDRT 512 (540)
Q Consensus 503 ~l~s~~-~Dg~ 512 (540)
++++.. .+|.
T Consensus 336 lyv~td~~~g~ 346 (353)
T 2g8s_A 336 LYVLTDESSGE 346 (353)
T ss_dssp EEEEECSTTEE
T ss_pred EEEEEeCCCCE
Confidence 555432 3443
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.64 E-value=0.0069 Score=55.98 Aligned_cols=226 Identities=10% Similarity=0.029 Sum_probs=119.2
Q ss_pred CeEEEeeC--CCcEEEEECCCCeEEEEee--cCCCcEEEEEEecCCCEEEEEeCC----CcEEEEecCCceEEEeecccc
Q 009188 289 QQLLTCGV--EEAVRRWDVSSGNCLHVYE--KAGLGLVSCGWHPDRKWIFSGAND----KSICMWELGGKELECWKGQRT 360 (540)
Q Consensus 289 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~ 360 (540)
.+++.|+. ...+.+||..+++-...-. ........+ ..++..++.|+.+ ..+.+||..+...........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 3568999998876433211 111111222 2356677777755 568899998766554433222
Q ss_pred ceEEEEEEccCCCEEEEEecC------CeEEEEECCCceEEEeec---CCceeEEEEcCCCCEEEEEec---------CC
Q 009188 361 LKISDLEVTSDGKQIITMCKE------SALLLLDREAKVERYIEE---DQTITSFSLSRDNKFLLVNLL---------NQ 422 (540)
Q Consensus 361 ~~v~~i~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~---------dg 422 (540)
......+...++..++.|+.+ ..+.+||..+..-..... ...-.+++. -+++.++.|+. -.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECC
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccc
Confidence 111112222367777777755 458899998876322221 111112222 36666776654 34
Q ss_pred eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-----CcEEEEECCCCcee--EeecCCCCCeEEEE
Q 009188 423 EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED-----SQVYIWHRASCDLI--GALPGHSGAVNCVS 495 (540)
Q Consensus 423 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~--~~~~~h~~~v~~l~ 495 (540)
.+.+||..+. .- ...............+ ..++++++.|+.+ ..+.+||..+.+-. ..+.........+.
T Consensus 170 ~~~~yd~~~~-~W-~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 170 SCEVYDPATE-TW-TELCPMIEARKNHGLV--FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CEEEEETTTT-EE-EEECCCSSCCBSCEEE--EETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred eEEEeCCCCC-eE-EECCCccchhhcceEE--EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 5888998765 21 1121111111111111 1256777777654 36889998775432 22222222223333
Q ss_pred eCCCCCCEEEEEeCC-----CcEEEecCCCCCcc
Q 009188 496 WNPANPHMLASASDD-----RTIRIWGLKDLNVK 524 (540)
Q Consensus 496 ~~~~~~~~l~s~~~D-----g~i~iw~~~~~~~~ 524 (540)
+ ++ .+++.||.+ ..+.+||+.+.+-.
T Consensus 246 ~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 246 V--GS-IVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp E--TT-EEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred E--CC-EEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3 34 488888854 45889999886543
No 315
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.60 E-value=0.038 Score=50.69 Aligned_cols=243 Identities=8% Similarity=0.024 Sum_probs=132.2
Q ss_pred ecCCCeEEEEeC--CCcEEEEEeecCCc-eEEEEEecCCCCCeEEEEECcCCCeEEEeeCC--------------CcEEE
Q 009188 240 SHNGKYLASSSN--DRSAIIWEVDLNGG-VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVE--------------EAVRR 302 (540)
Q Consensus 240 sp~g~~l~tg~~--dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--------------g~i~i 302 (540)
+++|.+|+.... ++ .||.++..+. ...+.. . .+--++++|.+|+-+... ..|+.
T Consensus 22 ~~~g~~iy~~n~~d~~--~ly~~~~dg~~~~~l~~---~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 22 CESDGEVFFSNTNDNG--RLYAMNIDGSNIHKLSN---D----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEETTEEEEEEGGGTT--EEEEEETTSCSCEEEEE---E----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEeCCEEEEEeCCCCc--eEEEEcCCCCCCEEccC---C----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 356777776642 34 4555543332 222211 1 123457788888877643 35777
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEe----CCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEE
Q 009188 303 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGA----NDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITM 378 (540)
Q Consensus 303 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 378 (540)
.++..++..... ... +..|+++++.|+-.. .+..|...++++.....+..... ..++++++.|.-.
T Consensus 93 i~~dg~~~~~l~-~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t 162 (302)
T 3s25_A 93 IKRNGHGSTVLD-PDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYN 162 (302)
T ss_dssp EETTSCCCEEEE-CSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETTEEEEE
T ss_pred EeCCCCcceEee-cCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECCEEEEE
Confidence 777666533322 221 236778888888765 33467777777655555444322 4567888888876
Q ss_pred ec-CCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEecCC--eEEEEEecCCceeeeEeeCCcCCeeEEEeeecc
Q 009188 379 CK-ESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQ--EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGG 455 (540)
Q Consensus 379 ~~-d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 455 (540)
+. ...|.+.++.+.....+.. .... ..++|++.+|+-....+ .|..-++.+.. ...+... .. .+++
T Consensus 163 ~~g~~~Iy~~~l~g~~~~~l~~-~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt~~--~~-----~~~~ 231 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEALFYD-CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVVLTEA--NI-----EHYN 231 (302)
T ss_dssp CTTTCCEEEEETTTTEEEEEEC-SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEECSCS--CE-----EEEE
T ss_pred eCCCceEEEEECCCCCEEEEeC-CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEEEeCC--Cc-----ceEE
Confidence 65 6788888888766444322 2222 34669898888766543 56666665542 2223221 11 1236
Q ss_pred CCCcEEEEee--CCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 456 LEQAFIASGS--EDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 456 ~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
|++..|+-++ ..+.|..-++..........+ .+..+.. .+..+..+--..+.|..-+
T Consensus 232 ~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~~i~i--~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 232 VYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFCNINV--TSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp EETTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEEEEEE--CSSEEEEEETTTCCEEEEE
T ss_pred ECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccceEEE--eCCEEEEEECCCCeEEEEE
Confidence 6777776543 235666666654333222222 2444443 4444555544445544333
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.54 E-value=0.063 Score=50.87 Aligned_cols=262 Identities=8% Similarity=0.134 Sum_probs=162.4
Q ss_pred CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC
Q 009188 252 DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK 331 (540)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (540)
+..|.|-|+..+... ..+.+.+ -+.-.+|..+.+|.-. ..++.|+|+++...++.+.-.. .|.--.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~-~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNP-IRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSC-EEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcc-eeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-
Confidence 347888888765443 2222221 1345677777777654 7789999999999998886554 56666776554
Q ss_pred EEEEEeCCCcEEEEecCC--ceEEEeecc---ccceEEEEEEccCCCEEEEEec-------CCeEEEEECCCceEEEe-e
Q 009188 332 WIFSGANDKSICMWELGG--KELECWKGQ---RTLKISDLEVTSDGKQIITMCK-------ESALLLLDREAKVERYI-E 398 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~-~ 398 (540)
.|+..+ +..|+-|++.+ .....+..+ ....|..-..+++.++++..+- .|.+.+|..+.+....+ +
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 196 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence 444433 45799999954 222222221 2357888899999999885542 36788999888774433 4
Q ss_pred cCCceeEEEEcCCC---CEEEEEec---CCeEEEEEecCC--c------eeeeE-eeCCcCCeeEEEeeeccCCCcEEEE
Q 009188 399 EDQTITSFSLSRDN---KFLLVNLL---NQEIHLWNIEGE--V------KLVAK-YKGHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 399 ~~~~i~~~~~s~~~---~~l~~~~~---dg~i~i~d~~~~--~------~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
|......+.+..+. ..++.+.. .+.+++.++... . +.+.. +.......+.+.... ++....++.
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv-s~kygviyv 275 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFL 275 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE-ETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe-cccCCEEEE
Confidence 44333333332211 23443433 278999998542 0 11111 112122233333333 666678888
Q ss_pred eeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCccc
Q 009188 464 GSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVKR 525 (540)
Q Consensus 464 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 525 (540)
-+.-|.|++||+.++.++..-+-...+|..-+-+.... =++.....|.|.--.+++..++.
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~-Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTT-EEEEEETTCEEEEEEECTTTHHH
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCC-cEEEEccCceEEEEEEccccchh
Confidence 89999999999999999987776667776655554443 36666688888777777665543
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.47 E-value=0.021 Score=53.00 Aligned_cols=183 Identities=9% Similarity=0.041 Sum_probs=95.3
Q ss_pred eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC----C-------CcEEEEECCCCeEEEE
Q 009188 245 YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV----E-------EAVRRWDVSSGNCLHV 313 (540)
Q Consensus 245 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~ 313 (540)
+++.|+ ..+.+||..++ .... ..+..........+...++..++.|+. + ..+.+||..+++-...
T Consensus 7 l~~~GG--~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 46888887654 2222 223222222233333457778888873 1 1277889888764322
Q ss_pred eecCCCcE-EEEEEecCCCEEEEEeCC--------CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec----
Q 009188 314 YEKAGLGL-VSCGWHPDRKWIFSGAND--------KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK---- 380 (540)
Q Consensus 314 ~~~~~~~v-~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---- 380 (540)
-....... .+++. -++..++.|+.+ ..+.+||..+.................+...+++.++.|+.
T Consensus 83 ~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 83 PPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred CCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 11111111 11122 256666666632 35899999876655443322212212222346677777775
Q ss_pred --CCeEEEEECCCceEEEeec-C-CceeEEEEcCCCCEEEEEecCC-----eEEEEEecCC
Q 009188 381 --ESALLLLDREAKVERYIEE-D-QTITSFSLSRDNKFLLVNLLNQ-----EIHLWNIEGE 432 (540)
Q Consensus 381 --d~~i~~~d~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~ 432 (540)
-..+.+||..+..-..... . ......+..-+++.++.|+.++ .+.+||..+.
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 2468999998876332221 1 1111112222667778877654 5788888765
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.44 E-value=0.035 Score=52.35 Aligned_cols=146 Identities=11% Similarity=0.080 Sum_probs=79.0
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceE-EEE----EecCCCCCeEEEEECcC---CCeEEEe-eC-----
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVT-LKH----KLSGHQKPVSCVSWSSD---DQQLLTC-GV----- 296 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~-~~~----~~~~h~~~v~~l~~s~~---~~~l~s~-~~----- 296 (540)
-...+.|+|.|+|+.|+.+...|.|++++.+ +... ... ...........|+|+|+ +..|..+ +.
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 4567899999999944455567888888742 2111 011 01122356789999995 4444443 22
Q ss_pred --CCcEEEEECCCC--e--EEE-Eeec------CCCcEEEEEEecCCCEEEEEeC-------------CCcEEEEecCCc
Q 009188 297 --EEAVRRWDVSSG--N--CLH-VYEK------AGLGLVSCGWHPDRKWIFSGAN-------------DKSICMWELGGK 350 (540)
Q Consensus 297 --dg~i~iwd~~~~--~--~~~-~~~~------~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~ 350 (540)
...|..|++..+ . ... .+.. .......++|.|||.+.++.+. .|.|.-++..+.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 234666666533 1 111 1111 1122457999999965555433 246777776543
Q ss_pred -------------eEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 351 -------------ELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 351 -------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
....+...+ .....++|++....|.++.
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence 111122222 2578899999433444443
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.42 E-value=0.01 Score=54.94 Aligned_cols=230 Identities=9% Similarity=0.014 Sum_probs=117.9
Q ss_pred CCCeEEEeeCC----CcEEEEECCCCeEEEEeecCCCc-EEEEEEecCCCEEEEEeC----C-----CcEEEEecCCceE
Q 009188 287 DDQQLLTCGVE----EAVRRWDVSSGNCLHVYEKAGLG-LVSCGWHPDRKWIFSGAN----D-----KSICMWELGGKEL 352 (540)
Q Consensus 287 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~~~ 352 (540)
++..++.|+.+ ..+.+||..+++-...-...... -.+++ ..++..++.|+. + ..+.+||..+...
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 45566666632 35888998877643321111111 11122 225666666665 2 3688999987765
Q ss_pred EEeeccccceEEEEEEccCCCEEEEEecC-----CeEEEEECCCceEEEeec---CCceeEEEEcCCCCEEEEEecC---
Q 009188 353 ECWKGQRTLKISDLEVTSDGKQIITMCKE-----SALLLLDREAKVERYIEE---DQTITSFSLSRDNKFLLVNLLN--- 421 (540)
Q Consensus 353 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d--- 421 (540)
..............+..-+++.++.|+.+ ..+.+||..+..-..... ...-.+++.. ++++++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~ 181 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTN 181 (308)
T ss_dssp EECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSC
T ss_pred eECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCC
Confidence 54432221111111122366777776643 468889988876332211 1111122222 66777777654
Q ss_pred --CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCC-----CcEEEEECCCCceeE--eecCCCCCeE
Q 009188 422 --QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSED-----SQVYIWHRASCDLIG--ALPGHSGAVN 492 (540)
Q Consensus 422 --g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~ 492 (540)
..+.+||+.+. .-. .............++. .++.+++.|+.+ ..+.+||+.+.+-.. .+........
T Consensus 182 ~~~~~~~yd~~~~-~W~-~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 257 (308)
T 1zgk_A 182 RLNSAECYYPERN-EWR-MITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG 257 (308)
T ss_dssp BCCCEEEEETTTT-EEE-ECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred cCceEEEEeCCCC-eEe-eCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE
Confidence 45888888765 211 1111111111111111 256777777765 469999987764332 2221111222
Q ss_pred EEEeCCCCCCEEEEEeCC-----CcEEEecCCCCCccc
Q 009188 493 CVSWNPANPHMLASASDD-----RTIRIWGLKDLNVKR 525 (540)
Q Consensus 493 ~l~~~~~~~~~l~s~~~D-----g~i~iw~~~~~~~~~ 525 (540)
.+.+ ++ .+++.||.+ ..|.+||+.+.+-..
T Consensus 258 ~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 258 ITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp EEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEE--CC-EEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 2223 34 478888754 358889988765443
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.41 E-value=0.035 Score=51.41 Aligned_cols=226 Identities=8% Similarity=0.022 Sum_probs=117.0
Q ss_pred eEEEeeCCCcEEEEECCCCeEEE-EeecCCCcEEEEEEecCCCEEEEEeC----CC-------cEEEEecCCceEEEeec
Q 009188 290 QLLTCGVEEAVRRWDVSSGNCLH-VYEKAGLGLVSCGWHPDRKWIFSGAN----DK-------SICMWELGGKELECWKG 357 (540)
Q Consensus 290 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~ 357 (540)
+++.|+ ..+.+||..+++-.. .+..........+...++..++.|+. ++ .+..||..+........
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344454 569999998887543 11111122233333457777788873 11 27788988776554433
Q ss_pred cccceEEEEEEccCCCEEEEEecC--------CeEEEEECCCceEEEeec--CCceeEEEEcCCCCEEEEEec-C-----
Q 009188 358 QRTLKISDLEVTSDGKQIITMCKE--------SALLLLDREAKVERYIEE--DQTITSFSLSRDNKFLLVNLL-N----- 421 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~-d----- 421 (540)
.........+..-++..++.|+.+ ..+.+||..+..-..... .......+...+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 222121112222356667776632 458899998876322221 111112222246677777775 2
Q ss_pred CeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC-----cEEEEECCCCceeE--eecCCCCCeEEE
Q 009188 422 QEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS-----QVYIWHRASCDLIG--ALPGHSGAVNCV 494 (540)
Q Consensus 422 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~l 494 (540)
..+.+||..+. .- ........+.....++ ..++++++.|+.++ .+.+||..+.+-.. .+.........+
T Consensus 165 ~~~~~yd~~~~-~W-~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 165 NKMCVYDPKKF-EW-KELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp CCEEEEETTTT-EE-EECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ceEEEEeCCCC-eE-EECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 46888998765 21 1111111111111111 12567777777654 58889987764332 222111122233
Q ss_pred EeCCCCCCEEEEEeCCC--------------cEEEecCCCCCcc
Q 009188 495 SWNPANPHMLASASDDR--------------TIRIWGLKDLNVK 524 (540)
Q Consensus 495 ~~~~~~~~~l~s~~~Dg--------------~i~iw~~~~~~~~ 524 (540)
.+ ++ .+++.||.++ .|.+||+.+.+-.
T Consensus 241 ~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 241 SL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 33 34 4788887642 3778898876543
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.33 E-value=0.016 Score=53.60 Aligned_cols=228 Identities=9% Similarity=-0.046 Sum_probs=114.0
Q ss_pred CCCeEEEEeCC----CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC----C-----CcEEEEECCCC
Q 009188 242 NGKYLASSSND----RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV----E-----EAVRRWDVSSG 308 (540)
Q Consensus 242 ~g~~l~tg~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d-----g~i~iwd~~~~ 308 (540)
++.+++.|+.+ ..+.+||.... .......+......-..+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 45566666632 35778876543 22222111111111122222 5677777775 2 46889998887
Q ss_pred eEEEEee--cCCCcEEEEEEecCCCEEEEEeCC-----CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecC
Q 009188 309 NCLHVYE--KAGLGLVSCGWHPDRKWIFSGAND-----KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 309 ~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
+-...-. ........+.+ ++..++.|+.+ ..+.+||..+.................+..-++..++.|+.+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 178 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD 178 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCC
Confidence 5433211 11111222222 56667776643 368899998766554432221111111122266777777654
Q ss_pred -----CeEEEEECCCceEEEeec---CCceeEEEEcCCCCEEEEEecC-----CeEEEEEecCCceeeeEeeCCcCCeeE
Q 009188 382 -----SALLLLDREAKVERYIEE---DQTITSFSLSRDNKFLLVNLLN-----QEIHLWNIEGEVKLVAKYKGHKRSRFV 448 (540)
Q Consensus 382 -----~~i~~~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~ 448 (540)
..+.+||..+..-..... ...-.+++.. ++++++.|+.+ ..+.+||+.+. .-. .+.........
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~-~~~~~p~~r~~ 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE-TWT-FVAPMKHRRSA 255 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT-EEE-ECCCCSSCCBS
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC-cEE-ECCCCCCCccc
Confidence 458899988876332221 1111222222 66777777664 46889998765 211 11111111111
Q ss_pred EEeeeccCCCcEEEEeeCCC-----cEEEEECCCCc
Q 009188 449 IRSCFGGLEQAFIASGSEDS-----QVYIWHRASCD 479 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~ 479 (540)
..++ ..++++++.|+.++ .+.+||..+.+
T Consensus 256 ~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 256 LGIT--VHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CEEE--EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEEE--EECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1111 12567777777543 57778876544
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.32 E-value=0.11 Score=48.65 Aligned_cols=174 Identities=10% Similarity=0.111 Sum_probs=99.6
Q ss_pred CCCcEEEEECCC--CeEEEEee--c-----CCCcEEEEEEec--CCC-EEEEEeC---CCcEEEEecC--CceEE---Ee
Q 009188 296 VEEAVRRWDVSS--GNCLHVYE--K-----AGLGLVSCGWHP--DRK-WIFSGAN---DKSICMWELG--GKELE---CW 355 (540)
Q Consensus 296 ~dg~i~iwd~~~--~~~~~~~~--~-----~~~~v~~~~~~~--~~~-~l~~~~~---dg~i~iwd~~--~~~~~---~~ 355 (540)
.+|.|.++|..+ ++. ..+. + .......+.+.+ ++. +|+++.. +.+|.+|++. +.... ..
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 688999999873 332 2222 2 123566777766 343 4554432 3567787763 33322 22
Q ss_pred eccccceEEEEEEccCCCEEEEEe-----------------cCCeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEE
Q 009188 356 KGQRTLKISDLEVTSDGKQIITMC-----------------KESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVN 418 (540)
Q Consensus 356 ~~~~~~~v~~i~~~~~~~~l~~~~-----------------~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 418 (540)
........+++.+.++|..+++.. ..|.+..+|.. ........-...+.++|+||++.+.++
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-~~~~~~~~l~~pNGia~spDg~~lYva 238 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-DVRVVAEGFDFANGINISPDGKYVYIA 238 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-eEEEeecCCcccCcceECCCCCEEEEE
Confidence 223345689999999998777654 13567777764 223334445667899999999887776
Q ss_pred e-cCCeEEEEEecCCcee--eeEeeCCcCCeeEEEeeeccC-CCcEEEEeeCC-CcEEEEEC
Q 009188 419 L-LNQEIHLWNIEGEVKL--VAKYKGHKRSRFVIRSCFGGL-EQAFIASGSED-SQVYIWHR 475 (540)
Q Consensus 419 ~-~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~s~d-g~i~iwd~ 475 (540)
. ..+.|..|++...... .+.+.. .. ...-..... +|++.+++..+ +.|..|+.
T Consensus 239 dt~~~~I~~~~~~~~g~l~~~~~~~~-~g---~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 239 ELLAHKIHVYEKHANWTLTPLRVLSF-DT---LVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEC-SS---EEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred eCCCCeEEEEEECCCCcEecCEEEeC-CC---CCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 5 5788999998643222 222311 11 111222256 47776655544 34444443
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.32 E-value=0.3 Score=53.68 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=122.9
Q ss_pred cEEEEECCCCeEEEEeecC-CCcEEEEEEe---cC-CCEEEEEe----------CCCcEEEEecCCceEEEee-ccccce
Q 009188 299 AVRRWDVSSGNCLHVYEKA-GLGLVSCGWH---PD-RKWIFSGA----------NDKSICMWELGGKELECWK-GQRTLK 362 (540)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~---~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~-~~~~~~ 362 (540)
.|++.|..+.+.+..+.-. ...+.+++.- .+ ..++++|+ ..|.|.+|++..+++.... ....+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 3677777777766665533 2345555432 22 46888876 3478999998654444332 223456
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEECCCce-EEE-eecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEee
Q 009188 363 ISDLEVTSDGKQIITMCKESALLLLDREAKV-ERY-IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYK 440 (540)
Q Consensus 363 v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 440 (540)
+++++-- +| +++++ ...++++|++.... ... ...-..+..+.....++++++|..-..+.++..+........+.
T Consensus 888 v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a 964 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA 964 (1158)
T ss_dssp EEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred CEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence 7777644 34 44443 45789999987653 221 11112233334444678999999888888876654333444444
Q ss_pred CCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC-------cee-EeecCC-CCCeEEEE---eCCCC--------
Q 009188 441 GHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-------DLI-GALPGH-SGAVNCVS---WNPAN-------- 500 (540)
Q Consensus 441 ~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~-~~~~~h-~~~v~~l~---~~~~~-------- 500 (540)
....+.......+.. ...++.+..+|.+.+...... +.+ ..-.-| ...|+++. +.+.+
T Consensus 965 ~D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~ 1042 (1158)
T 3ei3_A 965 RDFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPT 1042 (1158)
T ss_dssp ECCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CE
T ss_pred eecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccc
Confidence 444444444444433 246778999999999975541 222 111112 34577765 33322
Q ss_pred CCEEEEEeCCCcEEEec
Q 009188 501 PHMLASASDDRTIRIWG 517 (540)
Q Consensus 501 ~~~l~s~~~Dg~i~iw~ 517 (540)
...++-++.+|.|-+.-
T Consensus 1043 ~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1043 QGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEEETTSCEEEEE
T ss_pred cceEEEEecCCEEEEEE
Confidence 23577888899887753
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.29 E-value=0.009 Score=56.60 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=114.7
Q ss_pred CCCeEEEeeCC-CcEEEEECCC--CeEEEEeecCC--Cc-EEEEEEecCCCEEEEEeC-C---------CcEEEEecCCc
Q 009188 287 DDQQLLTCGVE-EAVRRWDVSS--GNCLHVYEKAG--LG-LVSCGWHPDRKWIFSGAN-D---------KSICMWELGGK 350 (540)
Q Consensus 287 ~~~~l~s~~~d-g~i~iwd~~~--~~~~~~~~~~~--~~-v~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~ 350 (540)
++.+++.|+.+ ..+.++|+.+ .+-. .+..-. .. -.+++. -++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666666543 4688889864 3222 221111 11 112222 25666666665 2 36889999877
Q ss_pred eEEEeeccc-cceEEEEEEccCCCEEEEEecC---------------------------------------CeEEEEECC
Q 009188 351 ELECWKGQR-TLKISDLEVTSDGKQIITMCKE---------------------------------------SALLLLDRE 390 (540)
Q Consensus 351 ~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d---------------------------------------~~i~~~d~~ 390 (540)
......... .......+...+++.++.|+.+ ..+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 655443322 1111111222577788888754 578999998
Q ss_pred CceEEEee-cC--Cce-eEEEEcCCCCEEEEEec------CCeEEEEEecCCceeeeEeeCCcCC--eeEEEeeeccCCC
Q 009188 391 AKVERYIE-ED--QTI-TSFSLSRDNKFLLVNLL------NQEIHLWNIEGEVKLVAKYKGHKRS--RFVIRSCFGGLEQ 458 (540)
Q Consensus 391 ~~~~~~~~-~~--~~i-~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~ 458 (540)
+..-.... .. ... .+++.. ++++++.|+. ...+..||+......-........+ .....++ ..++
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~--~~~~ 253 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAG--ISND 253 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEE--EETT
T ss_pred CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEE--EECC
Confidence 87732222 11 112 233332 5666666653 3457778762211112221111111 1010011 2356
Q ss_pred cEEEEeeCC----------------------CcEEEEECCCCc--eeEeecCCCCCeEEEEeCCCCCCEEEEEeCCC---
Q 009188 459 AFIASGSED----------------------SQVYIWHRASCD--LIGALPGHSGAVNCVSWNPANPHMLASASDDR--- 511 (540)
Q Consensus 459 ~~l~s~s~d----------------------g~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg--- 511 (540)
.+++.|+.+ ..+.+||..+.+ .+..+......-.++.+ ++ .+++.||.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW--NN-SLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE--TT-EEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe--CC-EEEEEeeeCCCCC
Confidence 777777632 257889987644 34444322222223333 45 4888888653
Q ss_pred ---cEEEecCCCCCcccc
Q 009188 512 ---TIRIWGLKDLNVKRK 526 (540)
Q Consensus 512 ---~i~iw~~~~~~~~~~ 526 (540)
.|.++++++++....
T Consensus 331 ~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEEEEEC-CCSCEEE
T ss_pred EeeeEEEEEEcCcEeEee
Confidence 366678988887654
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.29 E-value=0.054 Score=50.21 Aligned_cols=227 Identities=11% Similarity=0.114 Sum_probs=111.0
Q ss_pred eEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeC----CC-------cEEEEECCCCeEEEE
Q 009188 245 YLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGV----EE-------AVRRWDVSSGNCLHV 313 (540)
Q Consensus 245 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~ 313 (540)
+++.|+. .+.+||...+ .... ..+..............++..++.|+. ++ .+.+||..+++-...
T Consensus 18 i~~~GG~--~~~~yd~~~~-~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMEN-ECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTT-EEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCC-ceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 3778877644 2222 222221122222233456778888873 12 177889887764332
Q ss_pred eecCCCc-EEEEEEecCCCEEEEEeCC-------CcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEec-----
Q 009188 314 YEKAGLG-LVSCGWHPDRKWIFSGAND-------KSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCK----- 380 (540)
Q Consensus 314 ~~~~~~~-v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----- 380 (540)
-...... -.+++. -++..++.|+.+ ..+.+||..+.................+...+++.++.|+.
T Consensus 94 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 94 PPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK 172 (318)
T ss_dssp SCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSC
T ss_pred CCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCC
Confidence 1111111 111222 256677777754 25888898876655543322212212222356777777764
Q ss_pred -CCeEEEEECCCceEEEeec---CCceeEEEEcCCCCEEEEEecC-----CeEEEEEecCCceeeeEeeCCcCCeeEEEe
Q 009188 381 -ESALLLLDREAKVERYIEE---DQTITSFSLSRDNKFLLVNLLN-----QEIHLWNIEGEVKLVAKYKGHKRSRFVIRS 451 (540)
Q Consensus 381 -d~~i~~~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 451 (540)
...+.+||..+..-..... ...-.+++. -+++.++.|+.+ ..+.+||+.+.. -..............+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~ 249 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSISL 249 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSCEE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccceEE
Confidence 2458999998877332221 111122222 256777777653 346788877641 1111111111111111
Q ss_pred eeccCCCcEEEEeeCC--------------CcEEEEECCCCcee
Q 009188 452 CFGGLEQAFIASGSED--------------SQVYIWHRASCDLI 481 (540)
Q Consensus 452 ~~~~~~~~~l~s~s~d--------------g~i~iwd~~~~~~~ 481 (540)
+ ..++.+++.|+.+ ..+.+||..+.+-.
T Consensus 250 ~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 250 V--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp E--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred E--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 1 2256677777654 35777887765443
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.23 E-value=0.13 Score=47.82 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=125.4
Q ss_pred cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEE--e----ecCCCcEEEEEEecC---CCEEEEE---eCCC
Q 009188 273 SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHV--Y----EKAGLGLVSCGWHPD---RKWIFSG---ANDK 340 (540)
Q Consensus 273 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~l~~~---~~dg 340 (540)
...-.....|+|.|+|.++++--..|.|++++..+++.... + .........++++|+ +..|++. ..++
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 33445678999999999777765589999998766654222 2 122456889999995 4455543 2345
Q ss_pred cEEEEecCCc----------e-EEE-eeccccceEEEEEEccCCCEEEEEec-------------CCeEEEEECCCce--
Q 009188 341 SICMWELGGK----------E-LEC-WKGQRTLKISDLEVTSDGKQIITMCK-------------ESALLLLDREAKV-- 393 (540)
Q Consensus 341 ~i~iwd~~~~----------~-~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~-- 393 (540)
.|.-|.+... + +.. ......+....+.|.|||..+++.+. .|.|.-++.....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 6666666431 1 111 11112224567999999987777542 3566666665431
Q ss_pred -------EEEeecCCceeEEEEcCCCCEEEEEec-CCeEEEEEecCCce-----------------eeeEeeCCcCCeeE
Q 009188 394 -------ERYIEEDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEGEVK-----------------LVAKYKGHKRSRFV 448 (540)
Q Consensus 394 -------~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~-----------------~~~~~~~~~~~~~~ 448 (540)
..+.........++|+|+|.++++-.. ++.-.|.-+..+.. ++..+..+... .
T Consensus 188 ~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a--p 265 (347)
T 3das_A 188 GNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS--P 265 (347)
T ss_dssp TCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC--E
T ss_pred CCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC--C
Confidence 112222334678999998876665432 22222222222100 11111111111 1
Q ss_pred EEeeeccCCCcEEEEeeCCCcEEEEECCCCce----eEeecCCCCCeEEEEeCCCCCCEEEEE
Q 009188 449 IRSCFGGLEQAFIASGSEDSQVYIWHRASCDL----IGALPGHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
.-+.+. ++.++...-..+.|....+..... ...+.+..+.+.+|+..|+|. ++++.
T Consensus 266 ~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~t 325 (347)
T 3das_A 266 SGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLVT 325 (347)
T ss_dssp EEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEEE
T ss_pred cceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEEE
Confidence 112221 355555555556666666654432 233444457899999999996 54443
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.18 E-value=0.078 Score=49.10 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=113.8
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEE-eecCCCcEEEEEEecCCCEEEEEeC----CC-------cEEEEecCCceEEEeec
Q 009188 290 QLLTCGVEEAVRRWDVSSGNCLHV-YEKAGLGLVSCGWHPDRKWIFSGAN----DK-------SICMWELGGKELECWKG 357 (540)
Q Consensus 290 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~ 357 (540)
.++.|+. .+..||..+++-... +..............++..++.|+. ++ .+..||..+........
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 388999988875442 1111122223333456777778873 12 17788887766554432
Q ss_pred cccceEEEEEEccCCCEEEEEecC-------CeEEEEECCCceEEEee-cCC-ceeEEEEcCCCCEEEEEec------CC
Q 009188 358 QRTLKISDLEVTSDGKQIITMCKE-------SALLLLDREAKVERYIE-EDQ-TITSFSLSRDNKFLLVNLL------NQ 422 (540)
Q Consensus 358 ~~~~~v~~i~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~-~~~-~i~~~~~s~~~~~l~~~~~------dg 422 (540)
.........+...++..++.|+.+ ..+.+||..+..-.... ... .....+...+++.++.|+. -.
T Consensus 96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175 (318)
T ss_dssp BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCC
T ss_pred CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccc
Confidence 221111111122266777777754 35788998887633221 111 1111122246677777764 23
Q ss_pred eEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC-----cEEEEECCCCcee--EeecCCCCCeEEEE
Q 009188 423 EIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS-----QVYIWHRASCDLI--GALPGHSGAVNCVS 495 (540)
Q Consensus 423 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~--~~~~~h~~~v~~l~ 495 (540)
.+.+||..+. .-. .............++ ..++.+++.|+.++ .+.+||..+.+-. ..+.........+.
T Consensus 176 ~~~~yd~~~~-~W~-~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 251 (318)
T 2woz_A 176 RVFIYNPKKG-DWK-DLAPMKTPRSMFGVA--IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS 251 (318)
T ss_dssp CEEEEETTTT-EEE-EECCCSSCCBSCEEE--EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE
T ss_pred eEEEEcCCCC-EEE-ECCCCCCCcccceEE--EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE
Confidence 5889998765 211 111111111111111 12567777776543 5778998775433 22221111222233
Q ss_pred eCCCCCCEEEEEeCC--------------CcEEEecCCCCCcc
Q 009188 496 WNPANPHMLASASDD--------------RTIRIWGLKDLNVK 524 (540)
Q Consensus 496 ~~~~~~~~l~s~~~D--------------g~i~iw~~~~~~~~ 524 (540)
+ ++ .+++.||.+ ..+.+||+.+.+-.
T Consensus 252 ~--~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 252 L--AG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp E--TT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred E--CC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 3 34 477777754 35888898876543
No 328
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.13 E-value=0.36 Score=50.84 Aligned_cols=265 Identities=10% Similarity=0.077 Sum_probs=151.0
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEe-cCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKL-SGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN 309 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 309 (540)
...|.++.-..+|. |-.|+.+| +..||-. ........ ......|.++.-..+| .|..|+.+| +..||..+++
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~---~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~ 93 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGY---STQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADR 93 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSS---CEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCC---ceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCE
Confidence 46799998888774 66667777 5555521 11110000 1123468888777665 455566555 7899988765
Q ss_pred EEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEee----ccccceEEEEEEccCCCEEEEEecCCeEE
Q 009188 310 CLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWK----GQRTLKISDLEVTSDGKQIITMCKESALL 385 (540)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~i~ 385 (540)
...........|.++.. .++ .|..++.+ .|..+|..+.....+. ......|.++....+|...+ ++. +-+.
T Consensus 94 f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~ 168 (758)
T 3ott_A 94 YEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLC 168 (758)
T ss_dssp ECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEE
T ss_pred EECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHh
Confidence 43211112235666654 344 56666666 5888998776655441 11234688888888877655 444 4577
Q ss_pred EEECCCceEEEeec-------CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCC
Q 009188 386 LLDREAKVERYIEE-------DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQ 458 (540)
Q Consensus 386 ~~d~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 458 (540)
.++..+........ ...|.++...+++..|.+|+. +.+..+|..+. ... .+... ....+.......+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~~~-~~~~l--~~~~i~~i~~d~~g 243 (758)
T 3ott_A 169 RYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-QIK-QTEAF--HNNSIKSLALDGNG 243 (758)
T ss_dssp EEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-EEE-EEEEE--EEEEEEEEEECTTC
T ss_pred hCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-eEE-eccCC--CCCeEEEEEEcCCC
Confidence 88887765332211 224788888887776666664 46888887654 221 12111 11223344435566
Q ss_pred cEEEEeeCCCcEEEEECCCCceeEeec-------CCCCCeEEEEeCCCCCCEEEEEeCCCcEEEec
Q 009188 459 AFIASGSEDSQVYIWHRASCDLIGALP-------GHSGAVNCVSWNPANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~ 517 (540)
.+.+ |+.+ -+.+++..+++...... -....|.++....+|. |-.|+..| +.++.
T Consensus 244 ~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 244 DLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN--IWLGTDYG-ISLSR 304 (758)
T ss_dssp CEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC--EEEEESSS-EEEEC
T ss_pred CEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC--EEEEeCCc-ccccc
Confidence 5544 4444 48888877655432211 0234689998888775 44455556 54443
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.10 E-value=0.18 Score=47.10 Aligned_cols=200 Identities=12% Similarity=0.116 Sum_probs=117.6
Q ss_pred EecccCcCcEEEEEEecCCCeEEEEe------------CCCcEEEEEeecCC-ceEEEEEecC-----CCCCeEEEEECc
Q 009188 225 QILQGHTDEVWFLQFSHNGKYLASSS------------NDRSAIIWEVDLNG-GVTLKHKLSG-----HQKPVSCVSWSS 286 (540)
Q Consensus 225 ~~l~~h~~~V~~~~~sp~g~~l~tg~------------~dg~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~l~~s~ 286 (540)
+.+.+-....-.++..|+|..+++++ .+|.|.++|.+... ....+ .+.+ ..-....+.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~ 121 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFI 121 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEE
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEE
Confidence 33444333455677788876555542 68999999986322 22222 2333 224577777765
Q ss_pred --CCC-eEEEeeC---CCcEEEEECCCC--e--EEEEeecC-CCcEEEEEEecCCCEEEEEe-----------------C
Q 009188 287 --DDQ-QLLTCGV---EEAVRRWDVSSG--N--CLHVYEKA-GLGLVSCGWHPDRKWIFSGA-----------------N 338 (540)
Q Consensus 287 --~~~-~l~s~~~---dg~i~iwd~~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~ 338 (540)
++. +|+.+.. +.+|.+|++..+ . .+..+.+. -...+.+.+.++|.+.++.. .
T Consensus 122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence 343 4544432 456778776543 2 22333322 24578999999998766654 1
Q ss_pred CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCC-ce---EEEeecCCceeEEEEcC-CC
Q 009188 339 DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREA-KV---ERYIEEDQTITSFSLSR-DN 412 (540)
Q Consensus 339 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~-~~---~~~~~~~~~i~~~~~s~-~~ 412 (540)
.|.|..+|.. +..... ..-...+.++|+||++.++.+. ..+.|..|++.. +. ..........-.+++++ +|
T Consensus 202 ~g~vyr~d~~--~~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 202 WSFVTYYSPN--DVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG 278 (355)
T ss_dssp CEEEEEECTT--CCEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred ccEEEEEECC--eEEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence 2456555553 322222 2223678999999998877765 578899999753 21 22334456778899999 59
Q ss_pred CEEEEEecC-CeEEEEE
Q 009188 413 KFLLVNLLN-QEIHLWN 428 (540)
Q Consensus 413 ~~l~~~~~d-g~i~i~d 428 (540)
++.+++..+ +.|..|+
T Consensus 279 ~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp CEEEEEESCHHHHHSCC
T ss_pred cEEEEecCCceEEEEEC
Confidence 888766533 3344444
No 330
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=97.10 E-value=0.00032 Score=49.20 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHHHHHHHHHhcCChHHHHH
Q 009188 22 RVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLA 75 (540)
Q Consensus 22 ~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~~~~~~~i~~g~w~~~~~ 75 (540)
++|+.+-|++||..+||.+++.+|.+|.++..++.... =-+-++.-+|..|..
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~-ky~gLLEKKWTSViR 62 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDK-KYAGLLEKKWTSVIR 62 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHH-HHTTHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhh-hhhhhhhhhHHHHHH
Confidence 67999999999999999999999999999988743222 234456677866554
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.07 E-value=0.036 Score=52.37 Aligned_cols=235 Identities=8% Similarity=0.040 Sum_probs=113.4
Q ss_pred CCCeEEEEeCC-CcEEEEEeec-CCceEEEEEec-CCCCCeEEEEECcCCCeEEEeeC-C---------CcEEEEECCCC
Q 009188 242 NGKYLASSSND-RSAIIWEVDL-NGGVTLKHKLS-GHQKPVSCVSWSSDDQQLLTCGV-E---------EAVRRWDVSSG 308 (540)
Q Consensus 242 ~g~~l~tg~~d-g~i~iwd~~~-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~-d---------g~i~iwd~~~~ 308 (540)
++.+++.|+.+ ..+.+||... .........+. .....-.++.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 66666777643 4577777653 23333332222 11112222222 5677777776 2 46899999887
Q ss_pred eEEEEeecC-CCcEEEEEEecCCCEEEEEeCC---------------------------------------CcEEEEecC
Q 009188 309 NCLHVYEKA-GLGLVSCGWHPDRKWIFSGAND---------------------------------------KSICMWELG 348 (540)
Q Consensus 309 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---------------------------------------g~i~iwd~~ 348 (540)
+-...-... .......+...+++.++.|+.+ ..+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 643322111 1111111122567777888754 478999998
Q ss_pred CceEEEeeccccc-eE-EEEEEccCCCEEEEEec------CCeEEEEEC--CCceEEEeec---C-CceeEEEEcCCCCE
Q 009188 349 GKELECWKGQRTL-KI-SDLEVTSDGKQIITMCK------ESALLLLDR--EAKVERYIEE---D-QTITSFSLSRDNKF 414 (540)
Q Consensus 349 ~~~~~~~~~~~~~-~v-~~i~~~~~~~~l~~~~~------d~~i~~~d~--~~~~~~~~~~---~-~~i~~~~~s~~~~~ 414 (540)
+............ .. .+++. .+++.++.|+. ...+..||+ .+..-..... . ......+...++++
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 255 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL 255 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence 7665443322111 11 12222 35666666653 345777876 4444222211 1 11122233346677
Q ss_pred EEEEecC----------------------CeEEEEEecCCc-eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC---
Q 009188 415 LLVNLLN----------------------QEIHLWNIEGEV-KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS--- 468 (540)
Q Consensus 415 l~~~~~d----------------------g~i~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg--- 468 (540)
++.|+.+ ..+.+||+.+.. ..+..+....... . ++ ..++++++.|+.++
T Consensus 256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~--~~--~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYG-V--SL--PWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSS-E--EE--EETTEEEEEEEECGGGC
T ss_pred EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccc-e--eE--EeCCEEEEEeeeCCCCC
Confidence 7777642 247788887541 1122222111111 1 11 23667777787653
Q ss_pred ---cEEEEECCCCceeEee
Q 009188 469 ---QVYIWHRASCDLIGAL 484 (540)
Q Consensus 469 ---~i~iwd~~~~~~~~~~ 484 (540)
.|.++++++++.+...
T Consensus 331 ~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEEEC-CCSCEEEC
T ss_pred EeeeEEEEEEcCcEeEeee
Confidence 3566677777765443
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.01 E-value=0.11 Score=49.12 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=96.9
Q ss_pred ecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecC--CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCe--------
Q 009188 240 SHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG--HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGN-------- 309 (540)
Q Consensus 240 sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------- 309 (540)
..+|.-++.+-. +.||.-++..+..++.... .. .-..|..+..+|+|++||..+. ..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~-~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNF-SRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEET-TEEEEEETTTCSSCEEEEC-TTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEEC-CEEEEEECCCCCcceEEec-CcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccc
Confidence 345666666553 6788878765544444332 21 1235788999999999999864 468888876321
Q ss_pred ----EEEEeec------CCCcEEEEEEec---CCCEEEEEeCCCcEEEEecCC-c-eEEEeec--------cccceEEEE
Q 009188 310 ----CLHVYEK------AGLGLVSCGWHP---DRKWIFSGANDKSICMWELGG-K-ELECWKG--------QRTLKISDL 366 (540)
Q Consensus 310 ----~~~~~~~------~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~-~-~~~~~~~--------~~~~~v~~i 366 (540)
..+.+.- ...+|..+.|+| .+..|++-..|+.|++||+.. . ....+.. .....+.++
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 1233332 246799999999 566899999999999999964 1 1111111 111468899
Q ss_pred EEccCCCEEEEEe--cCCeEEEE
Q 009188 367 EVTSDGKQIITMC--KESALLLL 387 (540)
Q Consensus 367 ~~~~~~~~l~~~~--~d~~i~~~ 387 (540)
+|.+++-.|.+.+ .+|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999988888866 77887754
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.87 E-value=0.38 Score=46.91 Aligned_cols=143 Identities=18% Similarity=0.278 Sum_probs=85.5
Q ss_pred CCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE--Eeec------CCCcEEEEEEecC---CCEEEEEeC------
Q 009188 276 QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH--VYEK------AGLGLVSCGWHPD---RKWIFSGAN------ 338 (540)
Q Consensus 276 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~l~~~~~------ 338 (540)
-.....|+|.|+|+++++-...+.|++++..+++... .+.. .......++|+|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999877765444578888866565432 2221 2356779999995 556655442
Q ss_pred -------CCcEEEEecCC--ceE------EE-eeccccceEEEEEEccCCCEEEEEec----------------------
Q 009188 339 -------DKSICMWELGG--KEL------EC-WKGQRTLKISDLEVTSDGKQIITMCK---------------------- 380 (540)
Q Consensus 339 -------dg~i~iwd~~~--~~~------~~-~~~~~~~~v~~i~~~~~~~~l~~~~~---------------------- 380 (540)
...|.-++... ..+ .. ......+....++|.|||..+++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 13566666532 111 11 11122235789999999998877653
Q ss_pred ----------CCeEEEEECCCc-----------e-EEEeecCCceeEEEEcCCCCEEEEE
Q 009188 381 ----------ESALLLLDREAK-----------V-ERYIEEDQTITSFSLSRDNKFLLVN 418 (540)
Q Consensus 381 ----------d~~i~~~d~~~~-----------~-~~~~~~~~~i~~~~~s~~~~~l~~~ 418 (540)
.|.|.-++.... . ..+.........++|+|+|.++++-
T Consensus 186 ~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d 245 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSE 245 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEE
T ss_pred cccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEe
Confidence 245666665543 1 1122223456789999987766654
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.85 E-value=0.15 Score=55.79 Aligned_cols=261 Identities=7% Similarity=0.100 Sum_probs=148.3
Q ss_pred CCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC
Q 009188 252 DRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRK 331 (540)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (540)
...|.|-|+..+... ..+.+. --+.-.+|..+.+|.-. ..++.|+|+++...++.+.-.. +|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~-~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNP-IRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCc-cccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-
Confidence 347888888754322 111111 12234567776666553 7789999999988887775543 56666776554
Q ss_pred EEEEEeCCCcEEEEecCCc-eEEEeecc----ccceEEEEEEccCCCEEEEEe-------cCCeEEEEECCCceEEE-ee
Q 009188 332 WIFSGANDKSICMWELGGK-ELECWKGQ----RTLKISDLEVTSDGKQIITMC-------KESALLLLDREAKVERY-IE 398 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~-~~ 398 (540)
.|+..+ +..|+-|++.+. .+...... ....|..-..+++.++++..+ -.|.+.+|....+.... .+
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg 196 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence 333333 357999999642 22211111 135788888899999988654 34778888887766332 23
Q ss_pred cCCceeEEEEc--CC-CCEEEEEec---CCeEEEEEecCC--ce-e-----eeE-eeCCcCCeeEEEeeeccCCCcEEEE
Q 009188 399 EDQTITSFSLS--RD-NKFLLVNLL---NQEIHLWNIEGE--VK-L-----VAK-YKGHKRSRFVIRSCFGGLEQAFIAS 463 (540)
Q Consensus 399 ~~~~i~~~~~s--~~-~~~l~~~~~---dg~i~i~d~~~~--~~-~-----~~~-~~~~~~~~~~i~~~~~~~~~~~l~s 463 (540)
|......+... +. ...++.+.. .+.+++.++... .. . +.. +.......+.+.. ..++....+..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~-~vs~k~g~iy~ 275 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM-QISEKHDVVFL 275 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE-EeccccCEEEE
Confidence 33333333222 11 123332222 368888888542 01 1 111 1111111222222 22556667888
Q ss_pred eeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCCCCcc
Q 009188 464 GSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKDLNVK 524 (540)
Q Consensus 464 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~~~~~ 524 (540)
-+.-|.|++||+.+|.++..-+-...+|...+-+.... =++.....|.|.--.+....++
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEeccCCCCC-ceEEEcCCceEEEEEEccchhh
Confidence 88899999999999998866554555565555443322 2444556676666666555444
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.78 E-value=0.058 Score=51.07 Aligned_cols=139 Identities=10% Similarity=0.081 Sum_probs=90.7
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeEEEEeecC----CCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce-----------
Q 009188 287 DDQQLLTCGVEEAVRRWDVSSGNCLHVYEKA----GLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE----------- 351 (540)
Q Consensus 287 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------- 351 (540)
+|..++.+ .++.||.-++..+...+.+... -..+..+..+|+|++|+..+. ..|.|..+..+.
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 44444444 3466777777644444454443 226788999999999988765 478888875111
Q ss_pred --EEEeecc-----ccceEEEEEEccC---CCEEEEEecCCeEEEEECCCce---EEE------e---ecCCceeEEEEc
Q 009188 352 --LECWKGQ-----RTLKISDLEVTSD---GKQIITMCKESALLLLDREAKV---ERY------I---EEDQTITSFSLS 409 (540)
Q Consensus 352 --~~~~~~~-----~~~~v~~i~~~~~---~~~l~~~~~d~~i~~~d~~~~~---~~~------~---~~~~~i~~~~~s 409 (540)
...+.-. ...+|..+.|+|- +..|++-..|+.|++||+.... ... + .....+.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1111111 2357999999985 4689999999999999988621 101 1 122678899999
Q ss_pred CCCCEEEEEe--cCCeEEEE
Q 009188 410 RDNKFLLVNL--LNQEIHLW 427 (540)
Q Consensus 410 ~~~~~l~~~~--~dg~i~i~ 427 (540)
+++-.|.+.+ .+|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9886666655 77877643
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.044 Score=50.81 Aligned_cols=193 Identities=8% Similarity=-0.069 Sum_probs=102.2
Q ss_pred CCeEEEeeCCCcEEEEECCCCeEEEEeecC-CCcEEEEEEe--cCCCEEEEE--eCCCcEEEEecCCceEEEeecc----
Q 009188 288 DQQLLTCGVEEAVRRWDVSSGNCLHVYEKA-GLGLVSCGWH--PDRKWIFSG--ANDKSICMWELGGKELECWKGQ---- 358 (540)
Q Consensus 288 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~---- 358 (540)
+..++.++.||.|.-.|..+|+....++.. ..++....-. +.+..++.+ +.||.|..++..++........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347888999999999999999999998765 1222221100 112244444 5899999999877643321111
Q ss_pred ccceEEE---EEE-----ccCCCEEEEEecCCeEEEEECCCceEEEeecCCcee---------EEEEc-----CCCCEEE
Q 009188 359 RTLKISD---LEV-----TSDGKQIITMCKESALLLLDREAKVERYIEEDQTIT---------SFSLS-----RDNKFLL 416 (540)
Q Consensus 359 ~~~~v~~---i~~-----~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~---------~~~~s-----~~~~~l~ 416 (540)
...++.. ..+ ...+..+++++.+|.+...|..++............ +.... -.+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 0111111 000 014667889999999999999988744433222111 11111 1235677
Q ss_pred EEecCCeEEEEEecCCceeeeEe---eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeE
Q 009188 417 VNLLNQEIHLWNIEGEVKLVAKY---KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIG 482 (540)
Q Consensus 417 ~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 482 (540)
.+..+..+.+.+ +++..-...+ ...............+.++.+ +.++.||.|+.+|..+|..+-
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 776666666655 3321000001 110000000000000123555 447888999999988888765
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.76 E-value=0.4 Score=45.56 Aligned_cols=231 Identities=10% Similarity=0.186 Sum_probs=138.8
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-CeEEEEe
Q 009188 236 FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-GNCLHVY 314 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~ 314 (540)
+.-.+|..+.+|.=. ..++.|+|++.. .......- ...|..-.|-.+. .|+..+ +..|.-|++.. ..+.+.+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K---~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTT---EEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHh---hhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhhe
Confidence 455788888777765 578999999865 33333333 3467777786543 444443 66799999974 3567777
Q ss_pred ecC----CCcEEEEEEecCCCEEEEEeC-------CCcEEEEecCCceEEEeeccccceEEEEEEccCC---CEEEEEec
Q 009188 315 EKA----GLGLVSCGWHPDRKWIFSGAN-------DKSICMWELGGKELECWKGQRTLKISDLEVTSDG---KQIITMCK 380 (540)
Q Consensus 315 ~~~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~~~ 380 (540)
..| ...|.....+++.++++..+- .|.+.+|..+.+..... .+|......+.+..+. ..++.+..
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i-eGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI-EGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE-CCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh-eeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 665 457888888999998875432 36788998865544333 3333233333322111 23333333
Q ss_pred ---CCeEEEEECCCce----------EE-Eee---cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc
Q 009188 381 ---ESALLLLDREAKV----------ER-YIE---EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 381 ---d~~i~~~d~~~~~----------~~-~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
.+.+++.++.... .. .+. ...-..++.+++....+..-+.-|.+++||+.++ .++..-+-..
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-t~i~~nrIs~ 300 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISG 300 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-eeeeeecccC
Confidence 3789999885430 11 111 2345678899999999999999999999999998 4444444333
Q ss_pred CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC
Q 009188 444 RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC 478 (540)
Q Consensus 444 ~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 478 (540)
..++. .+.....+ =+++....|.|.--.++..
T Consensus 301 ~~iF~--t~~~~~~~-Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 301 ETIFV--TAPHEATA-GIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp SCEEE--EEEETTTT-EEEEEETTCEEEEEEECTT
T ss_pred CceEE--ecccCCCC-cEEEEccCceEEEEEEccc
Confidence 33333 22212222 2333445665555544433
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.52 E-value=0.052 Score=46.35 Aligned_cols=139 Identities=6% Similarity=-0.047 Sum_probs=81.1
Q ss_pred CCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeE------EEEeec-CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC
Q 009188 277 KPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC------LHVYEK-AGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 349 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 349 (540)
..+..++|+|+|.+.++ .+|.+.-.+..+... -..+-. .-....++.|.|+|.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999998886665 677666666544211 111110 0112467889999977766 569998887632
Q ss_pred ceEEEe-------eccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce-------EEEe--ecCCceeEEEEcCCCC
Q 009188 350 KELECW-------KGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV-------ERYI--EEDQTITSFSLSRDNK 413 (540)
Q Consensus 350 ~~~~~~-------~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~-------~~~~--~~~~~i~~~~~s~~~~ 413 (540)
.....+ -...-..+..+.+.|+|...++. ++.++-....... .... ..-...+.+.|.+++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 111111 11122367999999999988777 7776443332111 1111 1222345567888888
Q ss_pred EEEEEecCCe
Q 009188 414 FLLVNLLNQE 423 (540)
Q Consensus 414 ~l~~~~~dg~ 423 (540)
+.++. ++.
T Consensus 195 l~~v~--~g~ 202 (236)
T 1tl2_A 195 LFGVQ--GGK 202 (236)
T ss_dssp EEEEE--TTE
T ss_pred EEEEe--CCe
Confidence 77776 663
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.47 E-value=0.3 Score=47.69 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=61.5
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecC------CCCCeEEEEECcC---CCeEEEee-C----
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSG------HQKPVSCVSWSSD---DQQLLTCG-V---- 296 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~~---~~~l~s~~-~---- 296 (540)
-...+.|+|.|+|+++++-...+.|++++... +.......+.. ..+....|+|+|+ +..|..+. .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 45678999999999777654434677776432 22333333321 2456789999995 44444443 2
Q ss_pred --------CCcEEEEECCCC--e-----EEE-Eeec-CCCcEEEEEEecCCCEEEEEe
Q 009188 297 --------EEAVRRWDVSSG--N-----CLH-VYEK-AGLGLVSCGWHPDRKWIFSGA 337 (540)
Q Consensus 297 --------dg~i~iwd~~~~--~-----~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~ 337 (540)
...|.-++...+ . .+. .+.. .......++|.|||.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 124555554322 1 111 1211 123578899999998777654
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.41 E-value=0.064 Score=45.78 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=66.1
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccce--------EEEEEEccCCCEEEEEecCCeEEEEECC
Q 009188 319 LGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLK--------ISDLEVTSDGKQIITMCKESALLLLDRE 390 (540)
Q Consensus 319 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~i~~~~~~~~l~~~~~d~~i~~~d~~ 390 (540)
..+..++|+|+|.+.++ .+|.++-.+..+.....+... ... ...+.|.++|...++ .||.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999998875555 777777666644222222222 123 378999999998888 66999888764
Q ss_pred Cce-------EEEee--cCCceeEEEEcCCCCEEEEEecCCeEE
Q 009188 391 AKV-------ERYIE--EDQTITSFSLSRDNKFLLVNLLNQEIH 425 (540)
Q Consensus 391 ~~~-------~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~ 425 (540)
+.. ...+. .=..+..+.+.|+|.+.++. ++.++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 321 11111 12467999999999988877 77754
No 341
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.29 E-value=0.64 Score=42.38 Aligned_cols=201 Identities=9% Similarity=0.223 Sum_probs=126.3
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-CeEEEEe
Q 009188 236 FLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-GNCLHVY 314 (540)
Q Consensus 236 ~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~ 314 (540)
+.-.+|..+.+|.-. ..++.|+|++.. ..+....- ...|..-.|-.+. .|+-.+ +..|.-|+++. ..+.+.+
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK---~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvF 143 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF 143 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTT---EEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHh---hhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceee
Confidence 345688888777765 578999999865 33333332 4578888887544 444443 56799999974 4667777
Q ss_pred ecC----CCcEEEEEEecCCCEEEEEeC-------CCcEEEEecCCceEEEeeccccceEEEEEEccC---CCEEEEEec
Q 009188 315 EKA----GLGLVSCGWHPDRKWIFSGAN-------DKSICMWELGGKELECWKGQRTLKISDLEVTSD---GKQIITMCK 380 (540)
Q Consensus 315 ~~~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~ 380 (540)
..| ...|.....+++.++++..+- .|.+.+|..+.+...... +|......+.+..+ ...++.+..
T Consensus 144 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 144 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE-GHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC-CSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceee-eeeeeeEEEecCCCCCCceEEEEEEe
Confidence 665 457888888899998765432 367889988765544333 33222222222111 122333332
Q ss_pred ---CCeEEEEECCCc---e-------EE-Eee---cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCc
Q 009188 381 ---ESALLLLDREAK---V-------ER-YIE---EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHK 443 (540)
Q Consensus 381 ---d~~i~~~d~~~~---~-------~~-~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 443 (540)
.+.+++.++... . .. +.. ...-..++.+++....+..-+.-|.+++||+.++ .++..-+-..
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg-t~i~~nrIS~ 301 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISG 301 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC-cEEEEeccCC
Confidence 258888887543 1 11 111 2445678888998999999999999999999998 4444433333
Q ss_pred CC
Q 009188 444 RS 445 (540)
Q Consensus 444 ~~ 445 (540)
..
T Consensus 302 d~ 303 (365)
T 2xzh_A 302 ET 303 (365)
T ss_dssp SC
T ss_pred Cc
Confidence 33
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.22 E-value=0.28 Score=53.86 Aligned_cols=222 Identities=11% Similarity=0.079 Sum_probs=126.4
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEE
Q 009188 297 EEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQII 376 (540)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 376 (540)
...|.|.|+.++..+.... -..-+.-.+|..+.++.-. ..++.++|+.++.......-.. .|.--.|-.+.. ++
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~-l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT-VA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCe-eE
Confidence 3468888888765442221 1122344678777666554 6789999997655433322222 344444443332 22
Q ss_pred EEecCCeEEEEECCCce---EEEe----ecCCceeEEEEcCCCCEEEEEe-------cCCeEEEEEecCCceeeeEeeCC
Q 009188 377 TMCKESALLLLDREAKV---ERYI----EEDQTITSFSLSRDNKFLLVNL-------LNQEIHLWNIEGEVKLVAKYKGH 442 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~---~~~~----~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~ 442 (540)
. -.+..|+.|++.+.. ..+. -....|.....+++.++++..+ ..|.+.+|..+.. ..+.+.||
T Consensus 121 l-VT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegh 197 (1630)
T 1xi4_A 121 L-VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGH 197 (1630)
T ss_pred E-EcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhhhHh
Confidence 2 245689999986522 1111 1256788888899999887654 3478999998753 34445555
Q ss_pred cCCeeEEEeeeccCCCcEEEEeeC---CCcEEEEECCCC---ceeE------e-ec--CCCCCeEEEEeCCCCCCEEEEE
Q 009188 443 KRSRFVIRSCFGGLEQAFIASGSE---DSQVYIWHRASC---DLIG------A-LP--GHSGAVNCVSWNPANPHMLASA 507 (540)
Q Consensus 443 ~~~~~~i~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~---~~~~------~-~~--~h~~~v~~l~~~~~~~~~l~s~ 507 (540)
...-..+..-...+...+++.+.. .+.+.|-++... .+.. . ++ .-.+-..++..++..+ ++...
T Consensus 198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~i 276 (1630)
T 1xi4_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLI 276 (1630)
T ss_pred HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEE
Confidence 543222222111112222222221 268888887442 1111 0 11 1123345677777765 88888
Q ss_pred eCCCcEEEecCCCCCcccccc
Q 009188 508 SDDRTIRIWGLKDLNVKRKDC 528 (540)
Q Consensus 508 ~~Dg~i~iw~~~~~~~~~~~~ 528 (540)
+.-|.|.++|+.++.++....
T Consensus 277 tk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred ecCceEEEEecccchhhhhcc
Confidence 999999999999998876533
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.20 E-value=0.42 Score=49.57 Aligned_cols=195 Identities=10% Similarity=0.105 Sum_probs=106.4
Q ss_pred cCCCeEEEeeCC----CcEEEEECCCCeEEEEe-e------cCCCcEEEEEEec-CCCEEEEEeCCC------cEEEEec
Q 009188 286 SDDQQLLTCGVE----EAVRRWDVSSGNCLHVY-E------KAGLGLVSCGWHP-DRKWIFSGANDK------SICMWEL 347 (540)
Q Consensus 286 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~dg------~i~iwd~ 347 (540)
.++..++.||.+ ..+.+||..+++-...- . .....-.+++..+ ++..++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356667777643 45888998877644332 1 1111112333333 677777777543 5888999
Q ss_pred CCceEEEeeccccceE-EEEEEccCCCEEEEEecCC--eEEEEECCCceEEEeec-------CCceeEEEEcCC-CCEEE
Q 009188 348 GGKELECWKGQRTLKI-SDLEVTSDGKQIITMCKES--ALLLLDREAKVERYIEE-------DQTITSFSLSRD-NKFLL 416 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~v-~~i~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~-------~~~i~~~~~s~~-~~~l~ 416 (540)
.+.............. .+++...++..++.|+.++ .+.+||..+..-..... .....++.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8766554432222111 2233324788888887655 68999999877333321 112233555555 66777
Q ss_pred EEec--C-----CeEEEEEecCCce----eeeEeeCC-cCCeeEEEeeeccCCCcEEEEeeCC--------CcEEEEECC
Q 009188 417 VNLL--N-----QEIHLWNIEGEVK----LVAKYKGH-KRSRFVIRSCFGGLEQAFIASGSED--------SQVYIWHRA 476 (540)
Q Consensus 417 ~~~~--d-----g~i~i~d~~~~~~----~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~s~d--------g~i~iwd~~ 476 (540)
.|+. + +.+..||+.+..- ........ ........++. -.++.+++.|+.+ ..|.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 4688999987630 01111110 01111111111 1226777777743 469999988
Q ss_pred CCcee
Q 009188 477 SCDLI 481 (540)
Q Consensus 477 ~~~~~ 481 (540)
+.+-.
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 76543
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.17 E-value=0.74 Score=42.01 Aligned_cols=178 Identities=10% Similarity=0.137 Sum_probs=102.3
Q ss_pred EEEecCCCeEEEEeCCC------------cEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEee--CC--CcE
Q 009188 237 LQFSHNGKYLASSSNDR------------SAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCG--VE--EAV 300 (540)
Q Consensus 237 ~~~sp~g~~l~tg~~dg------------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~--~d--g~i 300 (540)
--++++|.+|+.+.... .-.|+.++..+.... .+.. .. +..|+++++.|+-.. .+ ..|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~--~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST--VLDP--DP--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE--EEEC--SC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce--Eeec--CC--ccEEEEeCCEEEEEeecCCCCceE
Confidence 45688999888775432 233444443332211 1211 11 236777888888775 23 346
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeC-CCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEe
Q 009188 301 RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGAN-DKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMC 379 (540)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 379 (540)
...++.... ...+..+.. ..++++++.|+-.+. ...|...++.++......... . ...+.|++.+++-..
T Consensus 132 y~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~---~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 132 YRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN---C-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC---E-EEEEEEETTEEEEEE
T ss_pred EEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC---c-cceeeecCCEEEEEE
Confidence 666665333 344444432 346778888886665 568888898877655554322 1 123568898888766
Q ss_pred cC--CeEEEEECCCceEEEeecCCceeEEEEcCCCCEEEEEec--CCeEEEEEecCC
Q 009188 380 KE--SALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLL--NQEIHLWNIEGE 432 (540)
Q Consensus 380 ~d--~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~ 432 (540)
.. ..|..-++.+.....+.. ..+ ..++|+++.|..+.. .+.|...++.+.
T Consensus 203 ~~~~~~I~~~~ldG~~~~~Lt~-~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 203 VNRDNAIVHVNINNPNPVVLTE-ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGGTTEEEEECSSSCCCEECSC-SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCCcEEEEEECCCCCeEEEeC-CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 44 467777777665333332 223 347888888876543 345666666543
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.17 E-value=1.6 Score=45.82 Aligned_cols=273 Identities=10% Similarity=0.005 Sum_probs=149.8
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCC----CCCeEEEEECcCCCeEEEeeCCCcEEEEECCC
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH----QKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS 307 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 307 (540)
..|.++....+|.+.+ |+.+| +..++.... .... ...... ...|.++...+++..|..|+. +-+..+|..+
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~-~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG-KFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTT-EEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC-ceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 4688888887777544 55544 666765432 1111 111111 234888888777765555554 4588899877
Q ss_pred CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEEEeec-------cccceEEEEEEccCCCEEEEEec
Q 009188 308 GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG-------QRTLKISDLEVTSDGKQIITMCK 380 (540)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~l~~~~~ 380 (540)
++...........|.++...++|...+ |+.+ -+.+++..+........ .....|.++..+.+|. +..|+.
T Consensus 221 ~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~ 297 (758)
T 3ott_A 221 GQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTD 297 (758)
T ss_dssp TEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEES
T ss_pred CeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeC
Confidence 764332222234578888777776544 4544 58888887655544321 1224688888888776 445555
Q ss_pred CCeEEEEECCCceEEEe-------ecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc-eeeeEeeCC----cCCeeE
Q 009188 381 ESALLLLDREAKVERYI-------EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV-KLVAKYKGH----KRSRFV 448 (540)
Q Consensus 381 d~~i~~~d~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~----~~~~~~ 448 (540)
.| +.++.......... .....|.++....+|.+.+. +.+ .+..++..+.. .....+... .-....
T Consensus 298 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (758)
T 3ott_A 298 YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNR 374 (758)
T ss_dssp SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSC
T ss_pred Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCC-cceeecccccccceeEEeccCCcCCCCCCCc
Confidence 56 44443322111111 12346888888888876554 444 46666654321 111222210 001112
Q ss_pred EEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEee--cC----CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCC
Q 009188 449 IRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGAL--PG----HSGAVNCVSWNPANPHMLASASDDRTIRIWGLK 519 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~----h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~ 519 (540)
+.......+|.+. .|+ ++-+..||..+++..... .. ....|.++.-.+++ .|..|+..+-|.+++.+
T Consensus 375 v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 375 IRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKH 447 (758)
T ss_dssp EEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHH
T ss_pred eEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccc
Confidence 3333335556544 355 456899998876543221 11 23468888887766 35556666667777654
No 346
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.16 E-value=0.83 Score=42.48 Aligned_cols=156 Identities=11% Similarity=0.088 Sum_probs=89.2
Q ss_pred cceEEecccCcCcEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEe----cCCCCCeEEEEECcC---CCeEEE
Q 009188 221 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKL----SGHQKPVSCVSWSSD---DQQLLT 293 (540)
Q Consensus 221 ~~~~~~l~~h~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~s~~---~~~l~s 293 (540)
...+..+-..-...+.|+|.|+|+++++--..|.|++++...+ .......+ .........|+++|+ +..|..
T Consensus 21 ~~~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g-~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 21 VKVLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG-RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp EEEEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CceeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC-cEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 3445555555667899999999997777655898888864322 22222222 123567899999995 334433
Q ss_pred e-e--CCCcEEEEECCCC----------eEEE-Eee-cCCCcEEEEEEecCCCEEEEEeC-------------CCcEEEE
Q 009188 294 C-G--VEEAVRRWDVSSG----------NCLH-VYE-KAGLGLVSCGWHPDRKWIFSGAN-------------DKSICMW 345 (540)
Q Consensus 294 ~-~--~dg~i~iwd~~~~----------~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iw 345 (540)
. + .++.|.-|.+..+ +.+. .+. ........+.|.|||.+.++.+. .|.|.-.
T Consensus 100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 2 2 3455666665441 1111 121 11223456899999987666442 3555555
Q ss_pred ecCCc--------eEEEeeccccceEEEEEEccCCCEEEEE
Q 009188 346 ELGGK--------ELECWKGQRTLKISDLEVTSDGKQIITM 378 (540)
Q Consensus 346 d~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 378 (540)
+..+. ....+...+ .....++|+|+|...++-
T Consensus 180 ~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEE
T ss_pred eCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEe
Confidence 65543 111222222 245678999987765543
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.85 Score=42.22 Aligned_cols=184 Identities=7% Similarity=0.010 Sum_probs=97.4
Q ss_pred CeEEEEeCCCcEEEEEeecCCceEEEEEecCC-CCCeEEEEEC--c-CCCeEEEe-eCCCcEEEEECCCCeEEEEeecC-
Q 009188 244 KYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH-QKPVSCVSWS--S-DDQQLLTC-GVEEAVRRWDVSSGNCLHVYEKA- 317 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s--~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~- 317 (540)
..++.++.||.|.-.|..++ +....+... ..++....-. + ++..++.. +.||.+..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG---~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG---HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT---EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCC---cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 36888899999988887765 455555433 1222221100 1 22333333 58999999999888665544321
Q ss_pred ---CCcEEE---EEE-e----cCCCEEEEEeCCCcEEEEecCCceEEEeeccccc-e------EEEEEEc-----cCCCE
Q 009188 318 ---GLGLVS---CGW-H----PDRKWIFSGANDKSICMWELGGKELECWKGQRTL-K------ISDLEVT-----SDGKQ 374 (540)
Q Consensus 318 ---~~~v~~---~~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~------v~~i~~~-----~~~~~ 374 (540)
..++.. ... . ..+..+++|+.+|.+...|+.+++.......... . ..|.... ..+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 122221 000 0 1456889999999999999988777655443211 0 0011110 12356
Q ss_pred EEEEecCCeEEEEECCCceE---EEee-cCCcee-----EEEEcCCCCEEEEEecCCeEEEEEecCC
Q 009188 375 IITMCKESALLLLDREAKVE---RYIE-EDQTIT-----SFSLSRDNKFLLVNLLNQEIHLWNIEGE 432 (540)
Q Consensus 375 l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~i~-----~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 432 (540)
++.+..+..+.+.+.. +.. .... ....+. +...+.++.+ ++++.||.|.-+|..++
T Consensus 168 v~ig~~~y~v~~~~~s-G~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G 232 (339)
T 2be1_A 168 IVIGKTIFELGIHSYD-GASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFR 232 (339)
T ss_dssp EEEEEEEEECEECCTT-SCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTC
T ss_pred EEEecceEEEEEECCC-CCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCC
Confidence 7777666666665532 210 0000 000000 0001224555 55788999999998766
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.67 E-value=1.6 Score=41.64 Aligned_cols=181 Identities=10% Similarity=-0.002 Sum_probs=92.0
Q ss_pred CeEEEEeCCCcEEEEEeec-CCceEEEEEecCCCCCeEEEEECc-CCCeEEEeeCCC----cEEEEECCCCeEEEEeec-
Q 009188 244 KYLASSSNDRSAIIWEVDL-NGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVEE----AVRRWDVSSGNCLHVYEK- 316 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~- 316 (540)
..|..|+..| +.+++.+. +........ ......|.+|++.| +...|.+++..| .|...+ ..|+.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 3577777766 55554432 123333221 12345699999998 333444444444 333322 23332222211
Q ss_pred -------------CCCcEEEEEEec-C-CCEEEEEeCCCcEEEEecCCceEEEeec------------------cccceE
Q 009188 317 -------------AGLGLVSCGWHP-D-RKWIFSGANDKSICMWELGGKELECWKG------------------QRTLKI 363 (540)
Q Consensus 317 -------------~~~~v~~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~v 363 (540)
....|.++++.| + ...+.++...+.|...+-.+........ .....+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 112577888887 2 5567776666666655433333322211 112357
Q ss_pred EEEEEccC-CCEEEEEecCCeEEEEECCCce-EEEee--c-----------CCceeEEEEcCC-CCEEEEEecCCeEEEE
Q 009188 364 SDLEVTSD-GKQIITMCKESALLLLDREAKV-ERYIE--E-----------DQTITSFSLSRD-NKFLLVNLLNQEIHLW 427 (540)
Q Consensus 364 ~~i~~~~~-~~~l~~~~~d~~i~~~d~~~~~-~~~~~--~-----------~~~i~~~~~s~~-~~~l~~~~~dg~i~i~ 427 (540)
.++.++|. ...+.++..++.+...+-.... ..... . ...+.++.++|. ...+.+++..+ |...
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 88999873 4556666555555555433333 11111 0 124788999986 45666666444 4443
Q ss_pred E
Q 009188 428 N 428 (540)
Q Consensus 428 d 428 (540)
+
T Consensus 259 ~ 259 (394)
T 3b7f_A 259 D 259 (394)
T ss_dssp E
T ss_pred C
Confidence 3
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.42 E-value=0.65 Score=48.16 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=80.7
Q ss_pred CCCeEEEEeCC------CcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCC--cEEEEECCCCeEEEE
Q 009188 242 NGKYLASSSND------RSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEE--AVRRWDVSSGNCLHV 313 (540)
Q Consensus 242 ~g~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~ 313 (540)
++.+++.||.+ +.+.+||..++ .+.....+......- +++...++..++.||.++ .+.+||..++.-...
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~-~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-EWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT-EEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC-cEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 66666777643 24667776543 222221111111112 233323788888887654 699999988764332
Q ss_pred ee-----cCCCcEEEEEEecC-CCEEEEEeC--C-----CcEEEEecCCce------EEEeecc-ccce-EEEEEEccCC
Q 009188 314 YE-----KAGLGLVSCGWHPD-RKWIFSGAN--D-----KSICMWELGGKE------LECWKGQ-RTLK-ISDLEVTSDG 372 (540)
Q Consensus 314 ~~-----~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~-~~~~-v~~i~~~~~~ 372 (540)
-. .......++.+..+ +..++.|+. + ..+.+||+.+.. ....... .... -.++....++
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~ 608 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR 608 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC
Confidence 21 11222233555555 666777765 2 358899997665 2222111 1111 1123333337
Q ss_pred CEEEEEec--------CCeEEEEECCCceEE
Q 009188 373 KQIITMCK--------ESALLLLDREAKVER 395 (540)
Q Consensus 373 ~~l~~~~~--------d~~i~~~d~~~~~~~ 395 (540)
..++.|+. ...+.+||..+..-.
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 77777774 345889999887643
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.36 E-value=1.7 Score=39.15 Aligned_cols=223 Identities=10% Similarity=0.065 Sum_probs=112.2
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEEEee
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELECWK 356 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 356 (540)
.|..++.... +.+... ||.|..|-....-.+..-......|..++...+. .++. . ||.|+.|-.+. +++- ..
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg-~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT-VP 97 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC-CC
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC-CC
Confidence 4666665433 323334 8888888754321111111122356666654332 2333 4 89999998753 2211 11
Q ss_pred ccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce
Q 009188 357 GQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK 434 (540)
Q Consensus 357 ~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 434 (540)
......|..++...+ +.++.. +|.++.|-....- -........|..++..... .++-. +|.++.|-.....+
T Consensus 98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCC
Confidence 111235776666543 444455 9999999765421 1111223456555554333 33333 79999997654322
Q ss_pred eeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEE
Q 009188 435 LVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIR 514 (540)
Q Consensus 435 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~ 514 (540)
+-.. ......+..+.+ .. ...++. .||.|+.|-....-.+..-......|..++..... .++.. ||.|.
T Consensus 172 lg~p-~~~~~~v~~i~~---G~-~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--~~al~--~g~v~ 240 (282)
T 3qhy_B 172 TTVP-AEAQSGVDDVAG---GI-FHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY--SLALK--NGKVI 240 (282)
T ss_dssp TSCC-GGGGSSEEEEEE---CS-SEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC--EEEEE--TTEEE
T ss_pred CCCc-eecCCCeEEEEe---cC-CEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE--EEEEE--CCEEE
Confidence 2111 011122223322 22 223333 59999999755432221111123457788776543 33333 99999
Q ss_pred EecCCCCCcc
Q 009188 515 IWGLKDLNVK 524 (540)
Q Consensus 515 iw~~~~~~~~ 524 (540)
.|-.......
T Consensus 241 ~wG~n~~gq~ 250 (282)
T 3qhy_B 241 AWGSSRTAPS 250 (282)
T ss_dssp EESTTCCCCG
T ss_pred EecCCCCccc
Confidence 9987765433
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.30 E-value=7.7 Score=36.68 Aligned_cols=263 Identities=10% Similarity=0.065 Sum_probs=122.1
Q ss_pred cCcEEEEEEec--CCCeEEEEeCCC--cEEEEEeec-CCceEEEEE---ecC--------CCCCeEEEEECcC--CCeEE
Q 009188 231 TDEVWFLQFSH--NGKYLASSSNDR--SAIIWEVDL-NGGVTLKHK---LSG--------HQKPVSCVSWSSD--DQQLL 292 (540)
Q Consensus 231 ~~~V~~~~~sp--~g~~l~tg~~dg--~i~iwd~~~-~~~~~~~~~---~~~--------h~~~v~~l~~s~~--~~~l~ 292 (540)
...|.+|++.| .+.+.+ ++..| .-.||.... +........ +.. +...|.++++.|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35799999998 454444 44333 112443332 222222211 110 1124778999872 45566
Q ss_pred EeeCCCcEEEEECCCCeEEEEeec-------------------CCCcEEEEEEec-CCCEEEEEeCCCcEEEEecCCceE
Q 009188 293 TCGVEEAVRRWDVSSGNCLHVYEK-------------------AGLGLVSCGWHP-DRKWIFSGANDKSICMWELGGKEL 352 (540)
Q Consensus 293 s~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 352 (540)
.++..+.|...+ ..|+.-..+.. ....+.++.++| +...++++..++.|...+-.+...
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDW 211 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSC
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCc
Confidence 666555554443 22332222211 123578899988 345566665555555443333333
Q ss_pred EEeeccc------------cceEEEEEEccC-CCEEEEEecCCeEEEEECCCceEEEeec---C---CceeEEEEcC-CC
Q 009188 353 ECWKGQR------------TLKISDLEVTSD-GKQIITMCKESALLLLDREAKVERYIEE---D---QTITSFSLSR-DN 412 (540)
Q Consensus 353 ~~~~~~~------------~~~v~~i~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~---~~i~~~~~s~-~~ 412 (540)
....... ...+.++.++|. ...+.++...+ |...+-....-..... . ..+.++.++| +.
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~ 290 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDP 290 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCT
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCC
Confidence 2221100 124889999886 35666665544 5555544443222211 1 2356788886 33
Q ss_pred CEEEEEec-----------CCeEEEEEecCCceeeeEee-CCcC-Cee--EE-EeeeccC-CCcEEEEeeCCCcEEEEEC
Q 009188 413 KFLLVNLL-----------NQEIHLWNIEGEVKLVAKYK-GHKR-SRF--VI-RSCFGGL-EQAFIASGSEDSQVYIWHR 475 (540)
Q Consensus 413 ~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~-~~~~-~~~--~i-~~~~~~~-~~~~l~s~s~dg~i~iwd~ 475 (540)
..+.+++. ++...+|........-..+. +... ..+ .+ ..+..+| +...|+.++.++.|+.-+
T Consensus 291 ~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~- 369 (394)
T 3b7f_A 291 RTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA- 369 (394)
T ss_dssp TCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-
T ss_pred CEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-
Confidence 44555432 23345565544322222221 1111 000 00 0111122 334455566566555432
Q ss_pred CCCceeEeecCCCCCeEEEEeC
Q 009188 476 ASCDLIGALPGHSGAVNCVSWN 497 (540)
Q Consensus 476 ~~~~~~~~~~~h~~~v~~l~~~ 497 (540)
..|+.-..+..+-..+.+|.|.
T Consensus 370 D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 370 DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp STTSBCEEEECSCSCEEEEEEE
T ss_pred CCCCCceEcccCCCCeeEEEEe
Confidence 3344444444444567777663
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.55 E-value=7.4 Score=34.89 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=118.1
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLH 312 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 312 (540)
.|..++.... ..++. . ||.|..|-.......-. -......|..++...+. .++. . ||.|..|-....-.+.
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~---p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTM---PAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSC---CGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCC---CccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC
Confidence 4556655432 22333 4 88888887654332211 01112356666665332 2333 4 8999999754321111
Q ss_pred EeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCC
Q 009188 313 VYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREA 391 (540)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~ 391 (540)
.-..-...|..++...+ +.++-. +|.|+.|-.+. +++. ........|..++...+ +.+... +|.++.|-...
T Consensus 96 ~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCT
T ss_pred CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCC
Confidence 11111346777766544 344445 89999998753 2221 11122335666665543 333334 79999987654
Q ss_pred ce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCc
Q 009188 392 KV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQ 469 (540)
Q Consensus 392 ~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~ 469 (540)
.- .........|..++...... ++- .+|.++.|-.....++-.... ....+..+.+ ..... ++. . ||.
T Consensus 169 ~gqlg~p~~~~~~v~~i~~G~~hs--~al-~~G~v~~wG~n~~gqlg~p~~-~~~~v~~i~~---G~~h~-~al-~-~g~ 238 (282)
T 3qhy_B 169 FGQTTVPAEAQSGVDDVAGGIFHS--LAL-KDGKVIAWGDNRYKQTTVPTE-ALSGVSAIAS---GEWYS-LAL-K-NGK 238 (282)
T ss_dssp TSTTSCCGGGGSSEEEEEECSSEE--EEE-ETTEEEEEECCTTSTTCCCGG-GGSSCCEEEE---CSSCE-EEE-E-TTE
T ss_pred CCCCCCceecCCCeEEEEecCCEE--EEE-ECCeEEEEECCCCCCCCCCcc-cCCCceEEEc---CCCEE-EEE-E-CCE
Confidence 22 11111234566666544333 233 599999997654322211111 1112223332 22222 333 3 999
Q ss_pred EEEEECCCCceeEeecCCCCCeEEEEeCCCC
Q 009188 470 VYIWHRASCDLIGALPGHSGAVNCVSWNPAN 500 (540)
Q Consensus 470 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 500 (540)
|+.|-.....++.. ...|.+++.....
T Consensus 239 v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 239 VIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp EEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred EEEecCCCCccccC----CCCcEEEEECcCe
Confidence 99997655433322 2357777766543
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.27 E-value=15 Score=36.25 Aligned_cols=219 Identities=10% Similarity=0.086 Sum_probs=124.1
Q ss_pred CCCeEEEEeC-CCcEEEEEeecCCceEEEEE-ecCCCCCeEEEEEC--cCCCeEEEeeC-------CCcE---------E
Q 009188 242 NGKYLASSSN-DRSAIIWEVDLNGGVTLKHK-LSGHQKPVSCVSWS--SDDQQLLTCGV-------EEAV---------R 301 (540)
Q Consensus 242 ~g~~l~tg~~-dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~s--~~~~~l~s~~~-------dg~i---------~ 301 (540)
||+||+.-.. +..|..-+++.- ++... -......+..++|- |+..+++.++. ||.. .
T Consensus 141 DGrylfiNdkan~RvAri~l~~~---~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~ 217 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIM---KCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYT 217 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT---EEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEE
T ss_pred eeEEEEEecCCCcceEEEECCcE---eeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhce
Confidence 6788887764 445666666543 22222 23456778889986 67788888764 3321 0
Q ss_pred E---EECCCCeEEEEeecCCCcEEEEEEecCCCEEEEEeCCC---------------cEEEEec----------------
Q 009188 302 R---WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDK---------------SICMWEL---------------- 347 (540)
Q Consensus 302 i---wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~---------------- 347 (540)
+ .|..+.+....+.. ......+...+++.+.++.+.+. .+.++++
T Consensus 218 ~f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 218 MYNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp EEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EEEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 1 12222222222111 11223344566777777665531 2444444
Q ss_pred ---------CC----c-eEEEeeccccceEEEEEEccCCCEEEEEe-cCCeEEEEECCCce--------------EEEee
Q 009188 348 ---------GG----K-ELECWKGQRTLKISDLEVTSDGKQIITMC-KESALLLLDREAKV--------------ERYIE 398 (540)
Q Consensus 348 ---------~~----~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~~d~~~~~--------------~~~~~ 398 (540)
+. + ....+. .-......+.++|||+++++++ -+.++.++|...-. .....
T Consensus 297 g~gv~ViD~~~~~~~~~~~~~~i-P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 297 DSKTPVLDGRKKDGKDSKFTRYV-PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp TCCCCEEECSCBTTBCCSSEEEE-EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred CCCeeEEccccccccCCceEEEE-eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 21 0 011111 1112345688899999998877 56789999987421 22233
Q ss_pred cCCceeEEEEcCCCCEEEEEecCCeEEEEEecCC---------ceeeeEeeCCcCCeeEEEee--eccCCCcEEEEee
Q 009188 399 EDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE---------VKLVAKYKGHKRSRFVIRSC--FGGLEQAFIASGS 465 (540)
Q Consensus 399 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~s~s 465 (540)
........+|+++|.-..+...|..|.-|++... ...+.++..|..+....... .-.++|++|++..
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 4556788999999966666778999999998642 24566666665543332211 1246777777764
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.86 E-value=23 Score=36.49 Aligned_cols=233 Identities=11% Similarity=0.093 Sum_probs=118.1
Q ss_pred ECcCCCeEEEe-eCC----CcEEEEECCCCeEEE-Eee-cCCC------cEEEEEEecCCCEEEEEe----------CCC
Q 009188 284 WSSDDQQLLTC-GVE----EAVRRWDVSSGNCLH-VYE-KAGL------GLVSCGWHPDRKWIFSGA----------NDK 340 (540)
Q Consensus 284 ~s~~~~~l~s~-~~d----g~i~iwd~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~~l~~~~----------~dg 340 (540)
++|++++++.+ |.. ..++++|+.+++.+. .+. ..+. ....++|..++..+++.. ...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 78888876654 222 359999999998763 111 0001 113347874443444321 124
Q ss_pred cEEEEecCCc---eEEEeeccccceEEEEEEccCCCE-----EEEEe---cCCeEEEEECCC--ceEEEeecCCceeEEE
Q 009188 341 SICMWELGGK---ELECWKGQRTLKISDLEVTSDGKQ-----IITMC---KESALLLLDREA--KVERYIEEDQTITSFS 407 (540)
Q Consensus 341 ~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~-----l~~~~---~d~~i~~~d~~~--~~~~~~~~~~~i~~~~ 407 (540)
.|+.|.+.+. ....+.............++++++ +++.+ ....+.+.+... ........... ..+.
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 295 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD-ATLQ 295 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT-CEEE
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc-ceEe
Confidence 6888988643 122222222222334556666662 34333 224466666553 22111211111 1223
Q ss_pred EcCCCCEEEEE----------ecCCeEEEEEecCCc------eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCC--c
Q 009188 408 LSRDNKFLLVN----------LLNQEIHLWNIEGEV------KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDS--Q 469 (540)
Q Consensus 408 ~s~~~~~l~~~----------~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg--~ 469 (540)
.+.++.+++.. ...+.|...|+.+.. .....+-.+.... .+....+.. +.++++...++ .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~l~~~~~~~~~~~ 373 (711)
T 4hvt_A 296 GSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE-VFNFISTTK-DRVFLATYDNVVAK 373 (711)
T ss_dssp EEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE-EEEEEEECS-SCEEEEEEETTEEE
T ss_pred eeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC-eEEEEEEEC-CEEEEEEEECCEEE
Confidence 34455555532 246678888886531 1122222222222 233333243 36777777777 4
Q ss_pred EEEEECCCCc-eeEe-ecC-CCCCeEEEEeCCCCCCEEEEEeCC---CcEEEecCC
Q 009188 470 VYIWHRASCD-LIGA-LPG-HSGAVNCVSWNPANPHMLASASDD---RTIRIWGLK 519 (540)
Q Consensus 470 i~iwd~~~~~-~~~~-~~~-h~~~v~~l~~~~~~~~~l~s~~~D---g~i~iw~~~ 519 (540)
++++|+.++. .... +.- ..+.+..+...++++.++++.+.. +.+..+|+.
T Consensus 374 l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 374 VVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6778876664 2222 221 135677777878776677766543 567888876
No 355
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=88.57 E-value=0.56 Score=32.57 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCCc
Q 009188 24 EFVRIIAKALYSLGYTKSGAHLEEESGIP 52 (540)
Q Consensus 24 e~~~li~q~L~e~g~~~s~~~L~~Es~~~ 52 (540)
-+.-||-.||+-+||..|+.+++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 47789999999999999999999999987
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.63 E-value=17 Score=39.14 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=33.7
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE 315 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 315 (540)
.+.+++..++..++++.+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999999988764
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.37 E-value=27 Score=34.50 Aligned_cols=216 Identities=16% Similarity=0.169 Sum_probs=123.3
Q ss_pred CCCeEEEee-CCCcEEEEECCCCeEEEEeecC-CCcEEEEEEe--cCCCEEEEEeCC-------CcE---------EE--
Q 009188 287 DDQQLLTCG-VEEAVRRWDVSSGNCLHVYEKA-GLGLVSCGWH--PDRKWIFSGAND-------KSI---------CM-- 344 (540)
Q Consensus 287 ~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~d-------g~i---------~i-- 344 (540)
||++|+.-. .+..|...++..-++-+.+... ...+..+.|- |+..++++++.. |.. .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 577787766 3556888888888887766543 4567788876 677788877652 221 01
Q ss_pred -EecCCceEEEeeccccceEEEEEEccCCCEEEEEecC--------------------------------------C--e
Q 009188 345 -WELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKE--------------------------------------S--A 383 (540)
Q Consensus 345 -wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------------------------------------~--~ 383 (540)
.|..+.++.. ...-.........+++|.+.++.+.+ + .
T Consensus 221 ~iD~~tm~v~~-Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAF-QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEE-EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEE-EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 1111111100 00001122234446677777766543 1 3
Q ss_pred EEEEECCC------ceEEEeecCCceeEEEEcCCCCEEEEEec-CCeEEEEEecCCc-----ee-------eeEeeCCcC
Q 009188 384 LLLLDREA------KVERYIEEDQTITSFSLSRDNKFLLVNLL-NQEIHLWNIEGEV-----KL-------VAKYKGHKR 444 (540)
Q Consensus 384 i~~~d~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~-----~~-------~~~~~~~~~ 444 (540)
+.+.|.+. ....++........+.++|||+++++++. +.++.++|++.-. ++ ......
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--- 376 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--- 376 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC---
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC---
Confidence 55555544 12445555667788999999999988775 7889999987421 11 111111
Q ss_pred CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC----------ceeEeecCCCCCeEEEE-----eCCCCCCEEEEEe
Q 009188 445 SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC----------DLIGALPGHSGAVNCVS-----WNPANPHMLASAS 508 (540)
Q Consensus 445 ~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~-----~~~~~~~~l~s~~ 508 (540)
..-.+...| .++|.-..+-.-|..|..|++... ..+..+.-|-.+-.-.+ -.|+|+ +|++..
T Consensus 377 GlGPlHt~F-d~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk-~lv~ln 453 (638)
T 3sbq_A 377 GLGPLHTTF-DGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGK-WLVALS 453 (638)
T ss_dssp CSCEEEEEE-CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSC-EEEEEE
T ss_pred CCcccEEEE-CCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCcc-EEEEec
Confidence 111233444 678866677778999999998653 34455554433222211 245664 666653
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.95 E-value=26 Score=33.92 Aligned_cols=108 Identities=10% Similarity=-0.014 Sum_probs=61.8
Q ss_pred CcEEEEEEecCCC-eEEEEeCCCcEEEEEeecCCceEEEEEec---------CCCCCeEEEEECcC----CCeEEEeeC-
Q 009188 232 DEVWFLQFSHNGK-YLASSSNDRSAIIWEVDLNGGVTLKHKLS---------GHQKPVSCVSWSSD----DQQLLTCGV- 296 (540)
Q Consensus 232 ~~V~~~~~sp~g~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~~----~~~l~s~~~- 296 (540)
...+.|+|.|+|. .|+++...|.|++++.+..........+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4668999999996 45566778999998643211001111111 12457889999996 444443332
Q ss_pred -C----------CcEEEEECCC----------CeEEEEee--cCCCcEEEEEEecCCCEEEEEeCC
Q 009188 297 -E----------EAVRRWDVSS----------GNCLHVYE--KAGLGLVSCGWHPDRKWIFSGAND 339 (540)
Q Consensus 297 -d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 339 (540)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344465542 12333332 123456789999999877765543
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.55 E-value=24 Score=31.41 Aligned_cols=194 Identities=11% Similarity=0.064 Sum_probs=106.0
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEE---EECCCCeEEEEeecCCCcEEEEEEec--CCCEEEEEeCCCcEEEEecCCce-
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRR---WDVSSGNCLHVYEKAGLGLVSCGWHP--DRKWIFSGANDKSICMWELGGKE- 351 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~- 351 (540)
.+..+.-.....+|+..+..|.++- |++..+.....+ ..+..|..+.. + +...++..+.+|.++...+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 3444433334445555555665443 232222111112 23455666544 4 46789999999999998874321
Q ss_pred ----EEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCce--------EEE--eecCCceeEEEEcCCCCEEEE
Q 009188 352 ----LECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKV--------ERY--IEEDQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 352 ----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~~~--~~~~~~i~~~~~s~~~~~l~~ 417 (540)
.....-.....+..+........++..+..|.+..++...-. ... ......|..+...+++..++.
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~ 182 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLV 182 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEE
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEE
Confidence 111111223456666666667789999999999888753311 111 233456777666666778999
Q ss_pred EecCCeEEEEEecCCc------eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEE--EECCC
Q 009188 418 NLLNQEIHLWNIEGEV------KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYI--WHRAS 477 (540)
Q Consensus 418 ~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~i--wd~~~ 477 (540)
.+..|.++...+..-. +-+..+ ..... .+..... .+...++..+.+|.+.. ++...
T Consensus 183 ~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~--lv~~~~~-~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 183 ITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDT--LVDLIPI-KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSC--EEEEEEE-SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCc--EEEEEEe-CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 9999999888764320 111122 11122 2222221 23345666677777776 76543
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.56 E-value=57 Score=35.05 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=26.8
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCceeEee
Q 009188 455 GLEQAFIASGSEDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 455 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 484 (540)
.++..++++-+.|+++++|++.+++++.+.
T Consensus 244 ~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 244 LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp ETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred cCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567789999999999999999999988764
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.41 E-value=40 Score=32.59 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=60.6
Q ss_pred CCeEEEEECcCCC-eEEEeeCCCcEEEEECCCCe---EEEEee---c------CCCcEEEEEEecC---CCEEEEE-eC-
Q 009188 277 KPVSCVSWSSDDQ-QLLTCGVEEAVRRWDVSSGN---CLHVYE---K------AGLGLVSCGWHPD---RKWIFSG-AN- 338 (540)
Q Consensus 277 ~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~---~------~~~~v~~~~~~~~---~~~l~~~-~~- 338 (540)
...+.|+|.|+|. .|+++...|.|++++..... .+..+. . .......++++|+ +.+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 45556788999999753221 122211 0 1346789999996 2334332 21
Q ss_pred -C----------CcEEEEecCC----------c-eEEEee-ccccceEEEEEEccCCCEEEEEecC
Q 009188 339 -D----------KSICMWELGG----------K-ELECWK-GQRTLKISDLEVTSDGKQIITMCKE 381 (540)
Q Consensus 339 -d----------g~i~iwd~~~----------~-~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d 381 (540)
+ ..|.-|.+.. . .+.... .........|.|.|||.++++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455531 1 111111 1223457889999999888876643
No 362
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=81.10 E-value=54 Score=33.81 Aligned_cols=189 Identities=8% Similarity=0.039 Sum_probs=98.7
Q ss_pred EecCCCEEEEE-eCCC----cEEEEecCCceEEEeecccc--c------eEEEEEEccCCCEEEEEe-----------cC
Q 009188 326 WHPDRKWIFSG-ANDK----SICMWELGGKELECWKGQRT--L------KISDLEVTSDGKQIITMC-----------KE 381 (540)
Q Consensus 326 ~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~--~------~v~~i~~~~~~~~l~~~~-----------~d 381 (540)
++|++++++.+ +..| .++++|+.+++...-..... . ....++|..+. .++.+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCCC
Confidence 67777766654 2222 69999998877653110100 0 11344776443 443332 12
Q ss_pred CeEEEEECCCce---EE-EeecCCc-eeEEEEcCCCCE-----EEEEec---CCeEEEEEecCCceeeeEeeCCcCCeeE
Q 009188 382 SALLLLDREAKV---ER-YIEEDQT-ITSFSLSRDNKF-----LLVNLL---NQEIHLWNIEGEVKLVAKYKGHKRSRFV 448 (540)
Q Consensus 382 ~~i~~~d~~~~~---~~-~~~~~~~-i~~~~~s~~~~~-----l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 448 (540)
..++.|.+.+.. .. +...... ..+...++++++ +++.+. ...+++.+..........+....... .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 294 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT-L 294 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE-E
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcce-E
Confidence 468888887753 22 2222222 334556677663 333331 24566666553212222232222211 1
Q ss_pred EEeeeccCCCcEEEEe----------eCCCcEEEEECCCCc-------eeEe-ec-CCCCCeEEEEeCCCCCCEEEEEeC
Q 009188 449 IRSCFGGLEQAFIASG----------SEDSQVYIWHRASCD-------LIGA-LP-GHSGAVNCVSWNPANPHMLASASD 509 (540)
Q Consensus 449 i~~~~~~~~~~~l~s~----------s~dg~i~iwd~~~~~-------~~~~-~~-~h~~~v~~l~~~~~~~~~l~s~~~ 509 (540)
+. ..++.+++.. ...+.|...|+.++. .... +. .....+..+.|..+ .++++...
T Consensus 295 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~ 368 (711)
T 4hvt_A 295 QG----SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATYD 368 (711)
T ss_dssp EE----EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEEE
T ss_pred ee----eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEEE
Confidence 11 2345555532 246789999987642 2222 32 23446788999875 48888888
Q ss_pred CCc--EEEecCCCCC
Q 009188 510 DRT--IRIWGLKDLN 522 (540)
Q Consensus 510 Dg~--i~iw~~~~~~ 522 (540)
++. |.++++.+++
T Consensus 369 ~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQ 383 (711)
T ss_dssp TTEEEEEEECEETTE
T ss_pred CCEEEEEEEECCCCc
Confidence 875 6778876663
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=79.55 E-value=37 Score=30.98 Aligned_cols=187 Identities=11% Similarity=0.066 Sum_probs=106.0
Q ss_pred cCCCeEEEEeCCCcEEEEEeecC---CceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEEC---CC------C
Q 009188 241 HNGKYLASSSNDRSAIIWEVDLN---GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDV---SS------G 308 (540)
Q Consensus 241 p~g~~l~tg~~dg~i~iwd~~~~---~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~---~~------~ 308 (540)
|+..++++.+.+|.|+--.+..- ... ...+.. .+.+..+........|+..+..|.+.-... .. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~--~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ--DFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC--CCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc--ccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 55667888888898886654310 000 001222 234444444445566777777887555443 22 2
Q ss_pred eEEEE-ee-cCCCcEEEEEEecC---CCEEEEEeCCCcEEEEecCC-------ceEEEeeccccceEEEEEEccCCCEEE
Q 009188 309 NCLHV-YE-KAGLGLVSCGWHPD---RKWIFSGANDKSICMWELGG-------KELECWKGQRTLKISDLEVTSDGKQII 376 (540)
Q Consensus 309 ~~~~~-~~-~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~ 376 (540)
..+.. +. ..+..|.++...++ +.+++..+.+|.++...+.. .-.....-.....+..+........++
T Consensus 80 ~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 22111 11 12345665543332 56789999999999988742 111111112224555555555667888
Q ss_pred EEecCCeEEEEECCCce--------EEE--eecCCceeEEEEcCCCC-EEEEEecCCeEEEEEec
Q 009188 377 TMCKESALLLLDREAKV--------ERY--IEEDQTITSFSLSRDNK-FLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 377 ~~~~d~~i~~~d~~~~~--------~~~--~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~ 430 (540)
..+.+|.+..++...-. ... ......|.++...+++. .+++.+..|..+..++.
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 89999999888764311 111 22345566665544455 78888889988887764
No 364
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=78.14 E-value=44 Score=31.13 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=108.8
Q ss_pred ecCCCeEEEEeCCCcEEEEEeec------CCceEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE---CCC---
Q 009188 240 SHNGKYLASSSNDRSAIIWEVDL------NGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD---VSS--- 307 (540)
Q Consensus 240 sp~g~~l~tg~~dg~i~iwd~~~------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd---~~~--- 307 (540)
-|+..++++.+.+|.|+=-.+.. ++.-.....+. ..+.+..+........|+..+..|.+.-+. +..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 36778899999999988765431 00001122233 345565555555566677777777755444 322
Q ss_pred ---CeEEEEe-e-cCCCcEEEEEEec---CCCEEEEEeCCCcEEEEecCCc------eEEEeeccccceEEEEEEccCCC
Q 009188 308 ---GNCLHVY-E-KAGLGLVSCGWHP---DRKWIFSGANDKSICMWELGGK------ELECWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 308 ---~~~~~~~-~-~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~ 373 (540)
|..+..+ . ..+..|.++.... ++.+++.++..|.++...+... -.....-.....+..+.......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR 162 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc
Confidence 2221111 1 2344566654432 4568999999999999886321 11111112233455555555667
Q ss_pred EEEEEecCCeEEEEECCCce--------EEE--eecCCceeEEEEcC---------------------------------
Q 009188 374 QIITMCKESALLLLDREAKV--------ERY--IEEDQTITSFSLSR--------------------------------- 410 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~--------~~~--~~~~~~i~~~~~s~--------------------------------- 410 (540)
.++..+.+|.+..++...-. ... ......|.++...+
T Consensus 163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------------
T ss_pred eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 88888999998888754311 111 22345565555544
Q ss_pred --CCCEEEEEecCCeEEEEEec
Q 009188 411 --DNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 411 --~~~~l~~~~~dg~i~i~d~~ 430 (540)
++..+++.+..|..+...+.
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGG
T ss_pred ccCCceEEEeeCCCCEEEEEHH
Confidence 45688899999998888764
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.23 E-value=39 Score=29.98 Aligned_cols=201 Identities=11% Similarity=0.022 Sum_probs=114.2
Q ss_pred EecccC---cCcEEEEEEecCCCeEEEEeCCCcEEEE---EeecCCceEEEEEecCCCCCeEEEEECc-CCCeEEEeeCC
Q 009188 225 QILQGH---TDEVWFLQFSHNGKYLASSSNDRSAIIW---EVDLNGGVTLKHKLSGHQKPVSCVSWSS-DDQQLLTCGVE 297 (540)
Q Consensus 225 ~~l~~h---~~~V~~~~~sp~g~~l~tg~~dg~i~iw---d~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d 297 (540)
+..++| .+.+..+.......+|+.-+.+|.++-- ++....... + + .....|..+.... +..+++.++.+
T Consensus 14 r~~~g~~~~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--l-~~~e~i~~v~~~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 14 IPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--K-SREEKIVGAFIREKFGNRLLLATKK 89 (276)
T ss_dssp EEGGGCCSSCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--S-STTCCEEEEEEGGGSCSEEEEEETT
T ss_pred eeccCCCCCCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--C-CCCCEEEEEECCcCCCCEEEEEeCC
Confidence 344455 3456666666666677777778876543 332211111 1 3 2355666664421 56789999999
Q ss_pred CcEEEEECCCC------eEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce--------EEEeeccccceE
Q 009188 298 EAVRRWDVSSG------NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE--------LECWKGQRTLKI 363 (540)
Q Consensus 298 g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v 363 (540)
|.++-..+..- .....++ .+..+..+....+...++..+..|.+..+....-. .....-.....+
T Consensus 90 G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~v 168 (276)
T 3no0_A 90 GYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDET 168 (276)
T ss_dssp SEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCE
T ss_pred CEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEE
Confidence 99999886542 2222222 23456666555566688888999988888763210 111111223456
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCce--------EEEeecCCceeEEEEcCCCCEEEEEecCCeEEE--EEec
Q 009188 364 SDLEVTSDGKQIITMCKESALLLLDREAKV--------ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHL--WNIE 430 (540)
Q Consensus 364 ~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~~ 430 (540)
..+...+++..++..+..|.++...+..-. .......+.+..+....+...++..+.+|.+.. ++..
T Consensus 169 v~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 169 SGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 666666667788999999998888754311 111133344444433334445666666666665 6543
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=75.95 E-value=52 Score=30.83 Aligned_cols=226 Identities=14% Similarity=0.191 Sum_probs=119.1
Q ss_pred CCeEEEEeCCCcEEEEEeecCCc--------eEEEEEecC-CCCCeEEEEECcCCCeEEEeeCCCcEEEEECCC-C----
Q 009188 243 GKYLASSSNDRSAIIWEVDLNGG--------VTLKHKLSG-HQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSS-G---- 308 (540)
Q Consensus 243 g~~l~tg~~dg~i~iwd~~~~~~--------~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~---- 308 (540)
....+.-..||.|..|=....+. ......+.. ....+..++.+....+.+....||.|..|-... +
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 34555556788888886442111 111122222 233456667776677777778899999996432 1
Q ss_pred ------eEEEEeec-CCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-c-----------eEEEeeccccceEEEEEEc
Q 009188 309 ------NCLHVYEK-AGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-K-----------ELECWKGQRTLKISDLEVT 369 (540)
Q Consensus 309 ------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~-----------~~~~~~~~~~~~v~~i~~~ 369 (540)
.....+.. ....|..++.. ..+.++...+|.|+.|-... + ............+..++..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 11111211 12356665543 44666677899999997632 1 1111122223356777765
Q ss_pred cCCCEEEEEecCCeEEEEECCCc----------e--EEEeec--CCceeEEEEcCCCCEEEEEecCCeEEEEEecCCce-
Q 009188 370 SDGKQIITMCKESALLLLDREAK----------V--ERYIEE--DQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK- 434 (540)
Q Consensus 370 ~~~~~l~~~~~d~~i~~~d~~~~----------~--~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~- 434 (540)
....+.++...+|.|+.|-.... . ...... ...|..++. ...+.++-+.+|.|+.|-.....+
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCC
Confidence 54567777889999999975431 0 111111 123444443 344555557789999997642111
Q ss_pred ---------eeeEeeCCc-CCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 435 ---------LVAKYKGHK-RSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 435 ---------~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
......... ..+..+.+ .....+....||.|+.|-...
T Consensus 298 G~g~~~~~~~P~~v~~l~~~~v~~ia~-----G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQGKKVIAIAT-----GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEE-----CSSEEEEEETTCCEEEEECCT
T ss_pred CCCCCccccCCeEeccCCCCCEEEEEe-----ccCeEEEECCCCCEEEeeCCC
Confidence 011111111 11222221 223445567899999997653
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=74.37 E-value=57 Score=30.54 Aligned_cols=230 Identities=11% Similarity=0.176 Sum_probs=121.9
Q ss_pred eEEEEECcCCCeEEEeeCCCcEEEEECCCC--------e---EEEEeec-CCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 009188 279 VSCVSWSSDDQQLLTCGVEEAVRRWDVSSG--------N---CLHVYEK-AGLGLVSCGWHPDRKWIFSGANDKSICMWE 346 (540)
Q Consensus 279 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--------~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 346 (540)
|..++. .....+....||.|..|-.... . ....+.. ....+..++.+....+.++-..||.|+.|-
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 444443 3445555678899999964321 1 1111211 223455566666667777888999999996
Q ss_pred cCC-c-----------eEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCc----------e--EEEee--cC
Q 009188 347 LGG-K-----------ELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK----------V--ERYIE--ED 400 (540)
Q Consensus 347 ~~~-~-----------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~----------~--~~~~~--~~ 400 (540)
.+. + ............|..++. ...+.++...+|.|+.|-.... . ..... ..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 532 0 111111111224555544 3556677788999999975431 0 11111 22
Q ss_pred CceeEEEEcCCCCEEEEEecCCeEEEEEecCCce----------eeeEeeCCcC-CeeEEEeeeccCCCcEEEEeeCCCc
Q 009188 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVK----------LVAKYKGHKR-SRFVIRSCFGGLEQAFIASGSEDSQ 469 (540)
Q Consensus 401 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~s~dg~ 469 (540)
..+..++......+.++-..+|.|+.|-.....+ ....+..... .+..+.+ ...+.+.-..||.
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~-----G~~hs~alt~~G~ 285 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC-----GSQFSVALTKSGA 285 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE-----ETTEEEEEETTSC
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC-----CCCEEEEEeCCCe
Confidence 3456666544446677777899999997542111 1111111111 1222222 2234455578999
Q ss_pred EEEEECCCC-c-------e---eEeecC-CCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 470 VYIWHRASC-D-------L---IGALPG-HSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 470 i~iwd~~~~-~-------~---~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
|+.|-.... + . ...+.. ....|..++... ...+....||.|+.|-...
T Consensus 286 v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~---~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS---LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTCCEEEEECCT
T ss_pred EEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc---CeEEEECCCCCEEEeeCCC
Confidence 999965321 1 0 111111 124577777643 2455567899999998764
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=72.48 E-value=63 Score=30.19 Aligned_cols=185 Identities=8% Similarity=0.024 Sum_probs=101.4
Q ss_pred cEEEEECCCC--eEEEEeecC------CCcEEEEEEe---cC----CCEEEEEe-CCCcEEEEecCCceEEEeeccccce
Q 009188 299 AVRRWDVSSG--NCLHVYEKA------GLGLVSCGWH---PD----RKWIFSGA-NDKSICMWELGGKELECWKGQRTLK 362 (540)
Q Consensus 299 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (540)
.|.+||+.++ +.++.+.-. .+.+..+.+. ++ +.+++.+. ..+.|.++|+.+++..+.....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 5788999998 888877632 3467888887 22 34555554 3567999999887776655322
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEECCCceEEEeecCCceeEEEEcCC----CCEEEEEecCCeEEEEEec-----CC-
Q 009188 363 ISDLEVTSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRD----NKFLLVNLLNQEIHLWNIE-----GE- 432 (540)
Q Consensus 363 v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~i~d~~-----~~- 432 (540)
+.|+..... .-+|.-. .-...+..++++|+ ++.|.-....+. ++|.+. ..
T Consensus 201 -----~~pd~~~~~--~i~G~~~------------~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~ 260 (381)
T 3q6k_A 201 -----FKAERPTKF--DYGGKEY------------EFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKG 260 (381)
T ss_dssp -----GSCCSCEEE--EETTEEE------------EECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTT
T ss_pred -----CccccCcce--EECCEEe------------EeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcc
Confidence 233311111 1112111 12356888999997 677776665442 333332 11
Q ss_pred -ceeeeEeeCCcC-CeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-C---ceeEeecC--CCCCeEEEEeCCCCCCEE
Q 009188 433 -VKLVAKYKGHKR-SRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-C---DLIGALPG--HSGAVNCVSWNPANPHML 504 (540)
Q Consensus 433 -~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~---~~~~~~~~--h~~~v~~l~~~~~~~~~l 504 (540)
...++.+ +..+ ..........+.+|.++++--+.+.|..|+..+ . .....+.. .-..+.++.+.+++. +.
T Consensus 261 ~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~-Lw 338 (381)
T 3q6k_A 261 GKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG-LW 338 (381)
T ss_dssp CCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC-EE
T ss_pred hhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe-EE
Confidence 0111211 1121 111222222135788888888889999999875 1 12222221 223577888877774 55
Q ss_pred EEEe
Q 009188 505 ASAS 508 (540)
Q Consensus 505 ~s~~ 508 (540)
+..+
T Consensus 339 v~sn 342 (381)
T 3q6k_A 339 FMSN 342 (381)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5543
No 369
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=71.71 E-value=60 Score=29.61 Aligned_cols=199 Identities=8% Similarity=-0.028 Sum_probs=111.5
Q ss_pred cCcEEEEEEecCCCeEEEEeCCCcEEEEEee---cCC---ceEEEEE-ec-CCCCCeEEEEECc---CCCeEEEeeCCCc
Q 009188 231 TDEVWFLQFSHNGKYLASSSNDRSAIIWEVD---LNG---GVTLKHK-LS-GHQKPVSCVSWSS---DDQQLLTCGVEEA 299 (540)
Q Consensus 231 ~~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~---~~~---~~~~~~~-~~-~h~~~v~~l~~s~---~~~~l~s~~~dg~ 299 (540)
.+.+..+........|+.-+..|.++-.... ... .-..+.. +. .....|.++...+ +..+++.++.+|.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 3445555555555666666667776554432 110 0011000 11 1234455554333 5789999999999
Q ss_pred EEEEECCC-------CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecC--Cce--------EEEeeccccce
Q 009188 300 VRRWDVSS-------GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG--GKE--------LECWKGQRTLK 362 (540)
Q Consensus 300 i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~--------~~~~~~~~~~~ 362 (540)
++-..+.. |.....++. ...+..+........++..+..|.+..+... .-. .....-.....
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 99987654 222222323 3455555555566678888899988777665 211 11111122345
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEECCCce--------EEEe---ecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 363 ISDLEVTSDGKQIITMCKESALLLLDREAKV--------ERYI---EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 363 v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
|.++...+++..++..+..|.++...+..-. .... .....+..+....+...++..+.+|.+.-++..
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 7777766677789999999999887753311 1111 113345555444455567777777777777654
No 370
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.52 E-value=1.1e+02 Score=32.05 Aligned_cols=150 Identities=9% Similarity=0.073 Sum_probs=75.0
Q ss_pred cCcEEEEEEecC-CCeEEEEeCCCcEEEEEeecCCceEEEEEecCC-------CCCeEEEEECcCC-CeEEEeeCCCc--
Q 009188 231 TDEVWFLQFSHN-GKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGH-------QKPVSCVSWSSDD-QQLLTCGVEEA-- 299 (540)
Q Consensus 231 ~~~V~~~~~sp~-g~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~~s~~~-~~l~s~~~dg~-- 299 (540)
.+.|.+|+++|. ...++.++..+.|...+ +.+..... +..+ ...|.+|+++|.. ..++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~---~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIP---LNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEE---SCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeE---CccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 468999999995 34566677666554432 22322322 2222 2469999998843 34444432211
Q ss_pred --EEEEEC-CCCeEEEEeecC-------C--CcEEEEEEecC-CCEEEEEeCCCcEEEEecCC-ceEEEeec-----ccc
Q 009188 300 --VRRWDV-SSGNCLHVYEKA-------G--LGLVSCGWHPD-RKWIFSGANDKSICMWELGG-KELECWKG-----QRT 360 (540)
Q Consensus 300 --i~iwd~-~~~~~~~~~~~~-------~--~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-----~~~ 360 (540)
-.||.. ..|+.-...... . ..+..++++|. .+.++++...+.|.. ..+. ..-..... ...
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence 334433 334433332211 0 13456788874 446666664444322 2222 22222111 112
Q ss_pred ceEEEEEEccC-CCEEEEEecC-CeEE
Q 009188 361 LKISDLEVTSD-GKQIITMCKE-SALL 385 (540)
Q Consensus 361 ~~v~~i~~~~~-~~~l~~~~~d-~~i~ 385 (540)
..+..+.++|. +..++++..+ +.+.
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred CCeEEEEECCCCCCEEEEEEcCCCeEE
Confidence 45788888874 4466666554 4443
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.58 E-value=15 Score=40.48 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=32.2
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEee
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYE 315 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 315 (540)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556666788899999999999999999999988765
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.74 E-value=89 Score=28.22 Aligned_cols=188 Identities=9% Similarity=0.038 Sum_probs=108.7
Q ss_pred cCCCeEEEEeCCCcEEEEEeecCCc------eEEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEECC---CC---
Q 009188 241 HNGKYLASSSNDRSAIIWEVDLNGG------VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS---SG--- 308 (540)
Q Consensus 241 p~g~~l~tg~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~--- 308 (540)
|+..++++.+.+|.|+--.+..-.. -.....+.. .+.+..+........++..+..|.++-.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4667788899999998776542210 000111122 2344455444455667777788876655542 21
Q ss_pred ---eE---EEEeecCCCcEEEEEEec---CCCEEEEEeCCCcEEEEecCCce------EEEeeccccceEEEEEEccCCC
Q 009188 309 ---NC---LHVYEKAGLGLVSCGWHP---DRKWIFSGANDKSICMWELGGKE------LECWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 309 ---~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~i~~~~~~~ 373 (540)
.. .-.+. .+..|..+...+ ++.+++..+..|.++...+..-. .....-.....+..+....+..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 10 00111 233455554433 45678889999999988873211 1111112234566665555567
Q ss_pred EEEEEecCCeEEEEECCCce--------EEE--eecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 374 QIITMCKESALLLLDREAKV--------ERY--IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~--------~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
.++..+.+|....+....-. ... ......+.++....++..+++.+..|......+.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 88899999999988865411 111 2234566676666667778888999998888875
No 373
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=60.30 E-value=5.6 Score=30.67 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcChH-HHHHHHHHhcCCcccChHHHHHHHHHhcCChHHHHHHhcccCCCC--hhhHhhHHHHHhhh-
Q 009188 23 VEFVRIIAKALYSLGYT-KSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVD--ESVVKSASFLILEQ- 98 (540)
Q Consensus 23 ~e~~~li~q~L~e~g~~-~s~~~L~~Es~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~l~~~~--~~~~~~~~~~l~~~- 98 (540)
..+...|+..|.+.||- .+...+.++.|+..+ ++..|+..+.++..+. ....+++..+..++
T Consensus 22 ~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~--------------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~ 87 (130)
T 2k9m_A 22 QELALELLNYLNEKGFLSKSVEEISDVLRCSVE--------------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEI 87 (130)
T ss_dssp HHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH--------------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH--------------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcC
Confidence 45778888899999974 445555556554332 3445556666654332 22333444443332
Q ss_pred ---------hhhh-cccccchh-HHHHHHHhhccC
Q 009188 99 ---------KFFE-LLDAEKVM-DALKTLRAEIAP 122 (540)
Q Consensus 99 ---------~~le-ll~~~~~~-~a~~~l~~~~~~ 122 (540)
.+++ ++..+++. +|+.++++ +.|
T Consensus 88 ~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir~-L~P 121 (130)
T 2k9m_A 88 YPEEEEILKKALRDLKRGKKLKPEIKGKLSR-LRL 121 (130)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCHHHHHHHHT-CCS
T ss_pred chhHHHHHHHhHHHHHHcCCHHHHHHHHHHc-CCC
Confidence 3455 55554433 45555553 444
No 374
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=58.11 E-value=4.8 Score=27.98 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHHHhhcChHHHHHHHHHhcCCccc
Q 009188 19 VIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLH 54 (540)
Q Consensus 19 ~~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~ 54 (540)
.++..++.+=|+++|+++| .|+..|.++-|++-.
T Consensus 12 d~~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp -CCSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred ccchHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 3467889999999999999 899999999998765
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=56.73 E-value=41 Score=33.68 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=42.8
Q ss_pred CeEEEEECcCCCeEEEeeCC------------CcEEEEECCCCeEEEEeecC-CCcEEEEEEecCCCEEEEE
Q 009188 278 PVSCVSWSSDDQQLLTCGVE------------EAVRRWDVSSGNCLHVYEKA-GLGLVSCGWHPDRKWIFSG 336 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 336 (540)
..-.|+|+|.|.+++.-..+ ..+.+.+..+++..+.+... ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35678999999877664322 23566677778876666554 5789999999999887764
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=52.49 E-value=78 Score=31.44 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=44.0
Q ss_pred CCeEEEEECcCCCeEEEeeC------------CCcEEEEECCCCeEEEEeecC-CCcEEEEEEecCCCEEEEEe
Q 009188 277 KPVSCVSWSSDDQQLLTCGV------------EEAVRRWDVSSGNCLHVYEKA-GLGLVSCGWHPDRKWIFSGA 337 (540)
Q Consensus 277 ~~v~~l~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 337 (540)
.....|.|.++|.+.++... ...+..++..+|+....+... ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45778999999987774321 125667777778876666543 46799999999999887653
No 377
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=51.94 E-value=1.4e+02 Score=26.99 Aligned_cols=231 Identities=8% Similarity=0.018 Sum_probs=123.0
Q ss_pred cCCCeEEEeeCCCcEEEEECCCCe-------EEEEee-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCceEE----
Q 009188 286 SDDQQLLTCGVEEAVRRWDVSSGN-------CLHVYE-KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELE---- 353 (540)
Q Consensus 286 ~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---- 353 (540)
++..++++.+.+|.|+--.+..-+ -+..+. ..+..+..+........++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456678888999998887654321 111111 12334555555555667788888888776655211000
Q ss_pred -------EeeccccceEEEEEEcc---CCCEEEEEecCCeEEEEECCCce------E--EEeecCCceeEEEEcCCCCEE
Q 009188 354 -------CWKGQRTLKISDLEVTS---DGKQIITMCKESALLLLDREAKV------E--RYIEEDQTITSFSLSRDNKFL 415 (540)
Q Consensus 354 -------~~~~~~~~~v~~i~~~~---~~~~l~~~~~d~~i~~~d~~~~~------~--~~~~~~~~i~~~~~s~~~~~l 415 (540)
.........+..+...+ +...++..+..|.++...+..-. . ........+..+.....+..+
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKV 165 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEE
Confidence 00111122454444332 46788999999999988864321 1 112235566666665556778
Q ss_pred EEEecCCeEEEEEecCCc------eeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCCc---------e
Q 009188 416 LVNLLNQEIHLWNIEGEV------KLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCD---------L 480 (540)
Q Consensus 416 ~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~ 480 (540)
+..+.+|.+..+....-. .-+..+.-..+ ...+.+... .++..+++.+..|.....++..-. .
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-d~vv~~~~v-~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~ 243 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-DLFVKVLSV-KENPYLLIVSENGYGKRLNMSKISELKRGATGYT 243 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-CCEEEEEEC-TTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-CEEEEEEEE-CCCCeEEEEECCCceEEEEHHHhcccCCCCCCEE
Confidence 889999999888875310 11111111111 122333232 345567888999998888864321 1
Q ss_pred eEeec-CCCCCeEEE-EeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 481 IGALP-GHSGAVNCV-SWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 481 ~~~~~-~h~~~v~~l-~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
...+. ...+.+.++ .+.++. -++..+..|.+.-..+.+
T Consensus 244 ~~~~~k~~~~~lv~~~~~~~~~--~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 244 SYKKSDKKAGSVVDAIAVSEDD--EILLVSKRSKALRTVAGK 283 (312)
T ss_dssp CSCTTCTTTCSEEEEEEECTTC--EEEEEETTCEEEEEEGGG
T ss_pred eeEccCCCCCeEEEEEEeCCCC--EEEEEeCCCeEEEEEccc
Confidence 11122 223444433 454443 455556666554444444
No 378
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.20 E-value=1.4e+02 Score=26.86 Aligned_cols=188 Identities=9% Similarity=0.046 Sum_probs=104.1
Q ss_pred cCCCeEEEEeCCCcEEEEEeecCCce------EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEEEE---CCC----
Q 009188 241 HNGKYLASSSNDRSAIIWEVDLNGGV------TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWD---VSS---- 307 (540)
Q Consensus 241 p~g~~l~tg~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd---~~~---- 307 (540)
|+..++++.+.+|.|+--.+..-... .....+.. .+.+..+........|+..+..|.+.-.. +..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 35567888899998876654321000 00001122 23344444444555666667777755443 322
Q ss_pred --CeEEE---EeecCCCcEEEEEEe---cCCCEEEEEeCCCcEEEEecCC------ceEEEeeccccceEEEEEEccCCC
Q 009188 308 --GNCLH---VYEKAGLGLVSCGWH---PDRKWIFSGANDKSICMWELGG------KELECWKGQRTLKISDLEVTSDGK 373 (540)
Q Consensus 308 --~~~~~---~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~i~~~~~~~ 373 (540)
|..+. .+ ..+..|.++... .++.+++..+.+|.++-..+.. .-.....-.....+..+....+..
T Consensus 80 a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 22211 12 233456665442 3456789999999999987731 111111111224555555555567
Q ss_pred EEEEEecCCeEEEEECCCce--------EE--EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 374 QIITMCKESALLLLDREAKV--------ER--YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~--------~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
.++..+.+|.+..++...-. .. .......|.++...+++..+++.+..|.++-.++.
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 78888999998888754311 11 12345567777666666778888999998888764
No 379
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=51.00 E-value=16 Score=28.47 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=35.5
Q ss_pred HhhHHHHHhhhhhhhcccccchhHHHHHHHhhccCCCCCchhHHHhhccc
Q 009188 88 VKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELSSCI 137 (540)
Q Consensus 88 ~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~l 137 (540)
...+.|-+.-+-|+||+..|..++|..++.+--.......+.++.|+.+.
T Consensus 30 L~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~i~~L~~i~ 79 (138)
T 2j4b_A 30 LLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNKSEEIKQFESIY 79 (138)
T ss_dssp HGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--CHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhHHHHHHHHhcCC
Confidence 34567889999999999999999999999874333222355566665543
No 380
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.57 E-value=1.4e+02 Score=26.40 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhhcC-hHHHHHHHHH--hcCCcccChHHHHH--HHHHhcCChHHHHHHhcc
Q 009188 22 RVEFVRIIAKALYSLG-YTKSGAHLEE--ESGIPLHSSMVNLF--TQQILDGHWDESLATLSK 79 (540)
Q Consensus 22 ~~e~~~li~q~L~e~g-~~~s~~~L~~--Es~~~~~~~~~~~~--~~~i~~g~w~~~~~~l~~ 79 (540)
.-+.++++.+++...| +.++...|++ +.++.-+....... .-....|++++|+..+..
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 4566777777777777 7777777776 23332222322222 334567888888888877
No 381
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=49.34 E-value=30 Score=28.58 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCC-----h---------HHHHHHhcccCCCChhhHhhHHHHHhhhhhhhcccccchhHHHHHHHhhccCC
Q 009188 58 VNLFTQQILDGH-----W---------DESLATLSKIGLVDESVVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPL 123 (540)
Q Consensus 58 ~~~~~~~i~~g~-----w---------~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~~ 123 (540)
+-+|..-|..|+ + +.|+..++.+....+.+..+..-++..|..+=.++.|++.+|-.+|++.+..-
T Consensus 68 icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 68 ICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 556777777774 2 35777888887666688888999999999999999999999999999876554
Q ss_pred CCCchhHHHhhccccc
Q 009188 124 CIKNSRVRELSSCIVS 139 (540)
Q Consensus 124 ~~~~~~~~~l~~~l~~ 139 (540)
..+..--.+|..++..
T Consensus 148 ~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 148 NSHMPFKSKLLMIISQ 163 (211)
T ss_dssp --CCTTHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHc
Confidence 3333333344444443
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.91 E-value=30 Score=35.35 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=30.4
Q ss_pred CeEEEEECcCCCeEEEeeCCCcEEEEECCCCeEEEEeec
Q 009188 278 PVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEK 316 (540)
Q Consensus 278 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 316 (540)
.|.++.+ +..++++-+.|.++|+|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555555 477999999999999999999999887764
No 383
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=48.74 E-value=1.6e+02 Score=26.80 Aligned_cols=232 Identities=13% Similarity=0.094 Sum_probs=123.6
Q ss_pred CeEEEEeCCCcEEEEEeecC-----Cce-EEEEEecCCCCCeEEEEECcCCCeEEEeeCCCcEEE---EECCC------C
Q 009188 244 KYLASSSNDRSAIIWEVDLN-----GGV-TLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRR---WDVSS------G 308 (540)
Q Consensus 244 ~~l~tg~~dg~i~iwd~~~~-----~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i---wd~~~------~ 308 (540)
..+++.+.+|.|+=-.+..- +.. .....+ ...+.+..+........|+.-+..|.++- |++.. |
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~-ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL-KQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCC-CGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccccc-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 45677777787775543210 000 000011 12234544444445556666666776443 34432 2
Q ss_pred eEEEEe-e-cCCCcEEEEEEec---CCCEEEEEeCCCcEEEEecCCce------EEEeeccccceEEEEEEccCCCEEEE
Q 009188 309 NCLHVY-E-KAGLGLVSCGWHP---DRKWIFSGANDKSICMWELGGKE------LECWKGQRTLKISDLEVTSDGKQIIT 377 (540)
Q Consensus 309 ~~~~~~-~-~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~i~~~~~~~~l~~ 377 (540)
..+..+ . ..+..|..+...+ +..+++..+.+|.|+...+.... ...........+..+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 221111 1 1244566654443 47799999999999998874311 11111122335656655566678899
Q ss_pred EecCCeEEEEECC--Cce--------EE--EeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecCCc------eeeeEe
Q 009188 378 MCKESALLLLDRE--AKV--------ER--YIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEV------KLVAKY 439 (540)
Q Consensus 378 ~~~d~~i~~~d~~--~~~--------~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~ 439 (540)
.+..|.+..+... .-. .. .......|.++...+.+.+++..+..|.++.-.+..-. .-+..+
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 9999999888876 311 11 12345667777777777789999999999888764321 111112
Q ss_pred eCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCC
Q 009188 440 KGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS 477 (540)
Q Consensus 440 ~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 477 (540)
.........+.+.... +...++..+.+|.+.-++...
T Consensus 243 ~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred EecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 1111011122222222 344566667777777776543
No 384
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.05 E-value=45 Score=36.72 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=26.6
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCceeEee
Q 009188 455 GLEQAFIASGSEDSQVYIWHRASCDLIGAL 484 (540)
Q Consensus 455 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 484 (540)
.++..++++-+.|++++||++.+++++.+.
T Consensus 246 ~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 246 LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp ETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred cCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 567789999999999999999999988764
No 385
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=45.56 E-value=85 Score=22.80 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=7.6
Q ss_pred EEEEcCCCCEEEE
Q 009188 405 SFSLSRDNKFLLV 417 (540)
Q Consensus 405 ~~~~s~~~~~l~~ 417 (540)
.+.+..+|++++.
T Consensus 54 ~L~l~~dGnLvL~ 66 (105)
T 4h3o_A 54 SAVLQSDGNFVVY 66 (105)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEeCCccEEEE
Confidence 4566666665554
No 386
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=45.21 E-value=24 Score=28.10 Aligned_cols=57 Identities=18% Similarity=0.064 Sum_probs=40.9
Q ss_pred CChHHHHHHhcccCCCChhhHhhHHHHHhhhhhhhcccccchhHHHHHHHhhccCCC
Q 009188 68 GHWDESLATLSKIGLVDESVVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLC 124 (540)
Q Consensus 68 g~w~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~~~ 124 (540)
.-|+.....+.--.+.++..-+.+.++|.+..+++.++.|++.+|+..|+++...|.
T Consensus 72 ~Tw~~~~~~lgl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~~WASLP 128 (158)
T 1am7_A 72 RXXDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIXASLP 128 (158)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTTTCTTSC
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhccccccCC
Confidence 346665555543345555555567788899999999999999999999888766553
No 387
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=44.34 E-value=33 Score=25.74 Aligned_cols=85 Identities=11% Similarity=0.014 Sum_probs=45.3
Q ss_pred HHHhhcChHHHHHHHHHhcCCcccChHHH--HHHHHHhcCChHHHHHHhccc-CCCChhhHhhHHHHHhhhhhhhccccc
Q 009188 31 KALYSLGYTKSGAHLEEESGIPLHSSMVN--LFTQQILDGHWDESLATLSKI-GLVDESVVKSASFLILEQKFFELLDAE 107 (540)
Q Consensus 31 q~L~e~g~~~s~~~L~~Es~~~~~~~~~~--~~~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~l~~~~~lell~~~ 107 (540)
.|++..-|.++...+++=-.+..+....- .=.-....|+|++|+..+... ...+... . .+-..-.-+...+
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~-----a~~~lg~~~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI-K-----GYIRKAACLVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-----HHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh-H-----HHHHHHHHHHHCC
Confidence 45555568888877776443333322211 112345678999998877763 2222111 1 1111111123457
Q ss_pred chhHHHHHHHhhcc
Q 009188 108 KVMDALKTLRAEIA 121 (540)
Q Consensus 108 ~~~~a~~~l~~~~~ 121 (540)
+.++|+..+++-+.
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888887543
No 388
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=44.03 E-value=1.8e+02 Score=26.27 Aligned_cols=197 Identities=8% Similarity=0.001 Sum_probs=103.9
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEeec---CC---ceEEEE---EecCCCCCeEEEE-ECc--CCCeEEEeeCCCc
Q 009188 232 DEVWFLQFSHNGKYLASSSNDRSAIIWEVDL---NG---GVTLKH---KLSGHQKPVSCVS-WSS--DDQQLLTCGVEEA 299 (540)
Q Consensus 232 ~~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~---~~---~~~~~~---~~~~h~~~v~~l~-~s~--~~~~l~s~~~dg~ 299 (540)
+.+..+........|+..+..|.+.-..... .+ .-..+. .+. ....|.++. ..+ ++.+++.++.+|.
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 3444444444556677777778766554421 11 001000 111 233455543 332 2567899999999
Q ss_pred EEEEECCC--------CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCCce--------EEEeeccccceE
Q 009188 300 VRRWDVSS--------GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE--------LECWKGQRTLKI 363 (540)
Q Consensus 300 i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v 363 (540)
++...+.. |.....+.. ++.+..+........++..+.+|.+..++...-. .....-.....|
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 99987742 222222322 3556665555556678888899988888763211 111111223356
Q ss_pred EEEEEccCCC-EEEEEecCCeEEEEECCCce--------EEEe---ec-CCceeEEEEcCCCCEEEEEecCCeEEEEEec
Q 009188 364 SDLEVTSDGK-QIITMCKESALLLLDREAKV--------ERYI---EE-DQTITSFSLSRDNKFLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 364 ~~i~~~~~~~-~l~~~~~d~~i~~~d~~~~~--------~~~~---~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 430 (540)
.++...+++. .+++.+..|..+..++..-. .... .. ...+..+....++..++..+.+|.+..+.+.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 6665544455 78888889888877764411 1111 11 2234433333334455566666666555554
No 389
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=43.51 E-value=70 Score=23.32 Aligned_cols=96 Identities=8% Similarity=-0.047 Sum_probs=55.7
Q ss_pred CCchHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHHHH-H-HHHHhcCChHHHHHHhcccC-CCChhhHhhHHHHH
Q 009188 19 VIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNL-F-TQQILDGHWDESLATLSKIG-LVDESVVKSASFLI 95 (540)
Q Consensus 19 ~~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~~~-~-~~~i~~g~w~~~~~~l~~l~-~~~~~~~~~~~~~l 95 (540)
..+...+..+-..+++..-|.++...+++=.....+....-. + .-....|+|++|+..+...- ..+... . + +..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~-~-~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI-K-G-YTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH-H-H-HHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch-H-H-HHH
Confidence 334566677777777777799988888876655444332211 1 23356899999988887642 111111 0 0 111
Q ss_pred hhhhhhhcccccchhHHHHHHHhhc
Q 009188 96 LEQKFFELLDAEKVMDALKTLRAEI 120 (540)
Q Consensus 96 ~~~~~lell~~~~~~~a~~~l~~~~ 120 (540)
+-. -+...++.++|+..+++-+
T Consensus 90 la~---~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 90 KAA---ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHH---HHHHTTCHHHHHHHHHHHH
T ss_pred HHH---HHHHHhhHHHHHHHHHHHH
Confidence 111 1234578889998888654
No 390
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=43.42 E-value=15 Score=18.61 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhc
Q 009188 23 VEFVRIIAKALYSL 36 (540)
Q Consensus 23 ~e~~~li~q~L~e~ 36 (540)
+||++||-||-+..
T Consensus 5 kDvlql~qQy~qsh 18 (26)
T 1kdl_A 5 KDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999987643
No 391
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.02 E-value=68 Score=26.90 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=60.9
Q ss_pred CCChhhHhhHHHHHhhhhhhhcccccchhHHHHHHHhhccCCCCCchhHHHhhcccccCCccccccCCCCcccccccHHH
Q 009188 82 LVDESVVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELSSCIVSPPKCVVVCSPKQDIVRAKSRPK 161 (540)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~ 161 (540)
..++.+..++.-++.+|-.+=.++.+++.+|..+|.+.+..-..+..--.+|..++...+.. ...-..=+-..
T Consensus 103 ~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~-------H~~lqnFSy~~ 175 (235)
T 3bu8_A 103 TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLA-------HPVIQNFSYET 175 (235)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTT-------SHHHHTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcc-------cHHHHhccHHH
Confidence 44567888899999999999999999999999999987764322222233455555442211 00001113344
Q ss_pred HHHHHhhcCCCCCCcChhHHHHHHHHHHHHHHhhccccc
Q 009188 162 LLEELQKLLPPMIMIPERRLEHLVEQALVLQREACMFHN 200 (540)
Q Consensus 162 l~~~~~~~~~~~~~~p~~rl~~ll~~~~~~q~~~~~~~~ 200 (540)
+.+.+..++......++. -|++.+.+.+...+..++
T Consensus 176 ~~~ki~~fve~~~~~a~~---FLL~~A~Kv~ks~~~~~~ 211 (235)
T 3bu8_A 176 FQQKMLRFLESHLDDAEP---YLLTMAKKALKSESAASS 211 (235)
T ss_dssp HHHHHHHHHHTTSCCCCC---HHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHhcccch---HHHHHHHHHHhhcccccC
Confidence 555555544332222222 456666666666555543
No 392
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=42.90 E-value=1.7e+02 Score=25.46 Aligned_cols=143 Identities=6% Similarity=-0.048 Sum_probs=77.6
Q ss_pred EEEEEeCCCcEEEEecCCceEEEeeccccceEEEEEEccCCCEEEEEecCCeEEEEECCCc---e---E-----EEeecC
Q 009188 332 WIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAK---V---E-----RYIEED 400 (540)
Q Consensus 332 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~---~---~-----~~~~~~ 400 (540)
..++.+.+|.|+--.................+..+........++..+..|.++.+....- . . ......
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~ 83 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 83 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCC
Confidence 4455667777765554332111111122234555555555566777788888777654221 1 1 012234
Q ss_pred CceeEEEEcCCCCEEEEEecCCeEEEEEecCC------ceeeeEeeCCcCCeeEEEeeeccCCCcEEEEeeCCCcEEEEE
Q 009188 401 QTITSFSLSRDNKFLLVNLLNQEIHLWNIEGE------VKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWH 474 (540)
Q Consensus 401 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd 474 (540)
..|.++....++.+++..+..|.++...+..- ......+... .. .+.+......+..++..+.+|.+..++
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~--lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AH--VMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CC--BCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CE--EEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 56666654446677889999999998887421 1222223221 11 122222212345788888999988887
Q ss_pred CCC
Q 009188 475 RAS 477 (540)
Q Consensus 475 ~~~ 477 (540)
...
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 653
No 393
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=40.87 E-value=25 Score=28.05 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=35.9
Q ss_pred HhhHHHHHhhhhhhhcccccchhHHHHHHHhhccCCCC--CchhHHHhhccc
Q 009188 88 VKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCI--KNSRVRELSSCI 137 (540)
Q Consensus 88 ~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~~~~~~~--~~~~~~~l~~~l 137 (540)
...+.|-+.-+-|++|+..|..++|..++.+ ..+... ..+.++.|+.+.
T Consensus 49 L~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~-f~~~~~~~~~~~i~~L~~i~ 99 (156)
T 2nxp_A 49 LSQLFYPLFVHMYLELVYNQHENEAKSFFEK-FHGDQECYYQDDLRVLSSLT 99 (156)
T ss_dssp HGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH-HGGGSCGGGHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HhHHhHHHHHHHHHHHhcCC
Confidence 3456788999999999999999999999987 444321 345566665443
No 394
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=38.95 E-value=1.4e+02 Score=29.73 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=11.2
Q ss_pred cEEEEEEecCCCEEEEE
Q 009188 320 GLVSCGWHPDRKWIFSG 336 (540)
Q Consensus 320 ~v~~~~~~~~~~~l~~~ 336 (540)
....|.|+++|.+.++.
T Consensus 477 sPDnL~fd~~G~LWf~T 493 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILT 493 (592)
T ss_dssp CEEEEEECTTCCEEEEE
T ss_pred CCCceEECCCCCEEEEe
Confidence 45567888887766643
No 395
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=38.42 E-value=1.1e+02 Score=30.67 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=36.7
Q ss_pred cEEEEEEecCCCeEEEEeCC----------CcEEEEEeecCCceEEEEEecC-CCCCeEEEEECcCCCeEEEe
Q 009188 233 EVWFLQFSHNGKYLASSSND----------RSAIIWEVDLNGGVTLKHKLSG-HQKPVSCVSWSSDDQQLLTC 294 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~d----------g~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~ 294 (540)
..-.|+|+|.|.+++.-..+ +.-.+|-...... +....+.+ ....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999999866654322 2234444432211 22333333 34679999999999888765
No 396
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=38.34 E-value=2e+02 Score=24.98 Aligned_cols=145 Identities=8% Similarity=-0.023 Sum_probs=77.3
Q ss_pred EEEEEecCCeEEEEECCCce--EEEeecCCceeEEEEcCCCCEEEEEecCCeEEEEEecC------CceeeeEeeCCcCC
Q 009188 374 QIITMCKESALLLLDREAKV--ERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEG------EVKLVAKYKGHKRS 445 (540)
Q Consensus 374 ~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~ 445 (540)
.+++.+.+|.|+--...... .........+..+........++..+..|.++-+.... ...++...-.-...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~ 83 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 83 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCC
Confidence 34556677777655543311 11122344455554444556677777888876665422 11211111111111
Q ss_pred eeEEEeeeccCCCcEEEEeeCCCcEEEEECCC-------CceeEeecCCCCCeEEEEeC-CCCCCEEEEEeCCCcEEEec
Q 009188 446 RFVIRSCFGGLEQAFIASGSEDSQVYIWHRAS-------CDLIGALPGHSGAVNCVSWN-PANPHMLASASDDRTIRIWG 517 (540)
Q Consensus 446 ~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~Dg~i~iw~ 517 (540)
...+.... ..++.+++..+..|.++...+.. |.....+.. .+.+..+... ..+ ..++..+.+|.+..+.
T Consensus 84 e~Iv~~~~-~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~-~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 84 ATVDHMLM-ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDAS-DMLLAITQAGRMLMFP 160 (256)
T ss_dssp CCEEEEEC-CCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTT-CEEEEEETTSEEEEEE
T ss_pred CEEEEEEE-eCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCC-CEEEEEcCCCeEEEEE
Confidence 22333333 23466788889999999987643 233333432 2445444444 233 3688888999988888
Q ss_pred CCCC
Q 009188 518 LKDL 521 (540)
Q Consensus 518 ~~~~ 521 (540)
+..-
T Consensus 161 ~~ei 164 (256)
T 1zvt_A 161 VSDL 164 (256)
T ss_dssp GGGS
T ss_pred HHHC
Confidence 7654
No 397
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=38.05 E-value=2.6e+02 Score=26.18 Aligned_cols=270 Identities=9% Similarity=0.083 Sum_probs=132.9
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEeecCCc--------eEEEEEecC-CCCCeEEEEECcCCCeEEEeeCC-CcEEE
Q 009188 233 EVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG--------VTLKHKLSG-HQKPVSCVSWSSDDQQLLTCGVE-EAVRR 302 (540)
Q Consensus 233 ~V~~~~~sp~g~~l~tg~~dg~i~iwd~~~~~~--------~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~d-g~i~i 302 (540)
.|..++. -+...+.-..||.|..|=....+. ......+.. ....|..++... .+.+....+ +.|..
T Consensus 17 ~v~~ia~--G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~--~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 17 KVLIISA--GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA--DHTVAYSQSGMEVYS 92 (406)
T ss_dssp CEEEEEE--CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTTTEEEE
T ss_pred ceEEEec--CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc--ceEEEEECCCCEEEE
Confidence 4444444 233445556678887785432211 111112221 223577776543 233333445 48999
Q ss_pred EECCCC---------eEE--EEee-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEecCC-ce-----------EEEeecc
Q 009188 303 WDVSSG---------NCL--HVYE-KAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG-KE-----------LECWKGQ 358 (540)
Q Consensus 303 wd~~~~---------~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~-----------~~~~~~~ 358 (540)
|-.... ... ..+. .....|..++.. ..+.++-..+|.|+.|-.+. ++ .......
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence 954321 111 1111 122356666553 44666677899999997642 11 1111111
Q ss_pred ccceEEEEEEccCCCEEEEEecCCeEEEEECCCc----------e--EEEee--cCCceeEEEEcCCCCEEEEEecCCeE
Q 009188 359 RTLKISDLEVTSDGKQIITMCKESALLLLDREAK----------V--ERYIE--EDQTITSFSLSRDNKFLLVNLLNQEI 424 (540)
Q Consensus 359 ~~~~v~~i~~~~~~~~l~~~~~d~~i~~~d~~~~----------~--~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i 424 (540)
....|..++. ...+.++...+|.++.|-.... . ..... ....|..++. ...+.++-+.+|.|
T Consensus 171 ~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 171 EGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTISVSYSGAL 246 (406)
T ss_dssp TTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEEEETTCCE
T ss_pred CCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEEEcCCCCE
Confidence 1224555554 3456667778999999964321 1 11111 1133444443 34455566778899
Q ss_pred EEEEecCCcee----------eeEeeCC-cCCeeEEEeeeccCCCcEEEEeeCCCcEEEEECCCC-c-----------ee
Q 009188 425 HLWNIEGEVKL----------VAKYKGH-KRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASC-D-----------LI 481 (540)
Q Consensus 425 ~i~d~~~~~~~----------~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~-----------~~ 481 (540)
+.|-.....++ ...+... ...+..+.+ .....+.-..||.|+.|-.... + +.
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 321 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG-----GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV 321 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEE
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe-----cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCE
Confidence 98875432111 1111111 111222221 2234555678999999964431 1 11
Q ss_pred EeecCCCCCeEEEEeCCCCCCEEEEEeCCCcEEEecCCC
Q 009188 482 GALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 520 (540)
Q Consensus 482 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~Dg~i~iw~~~~ 520 (540)
.........|..++... ...+.-..||.|+.|-...
T Consensus 322 ~v~~~~~~~v~~va~G~---~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 322 QVRFPDDQKVVQVSCGW---RHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp EECCGGGCCEEEEEECS---SEEEEEETTSCEEEEECCT
T ss_pred EEeccCCCcEEEEEeCC---CeEEEEeCCCCEEEecCCC
Confidence 11111234677777643 3455567899999998654
No 398
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.46 E-value=89 Score=31.99 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=40.5
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCceeEeecCCCCC--eEEEEeCC---C-------CCCEEEEEe--CCCcEEEecCCC
Q 009188 456 LEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGA--VNCVSWNP---A-------NPHMLASAS--DDRTIRIWGLKD 520 (540)
Q Consensus 456 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~---~-------~~~~l~s~~--~Dg~i~iw~~~~ 520 (540)
.+..++++-+.|.++|+|++.+++++.+..-...+ ... ...| . + .++++-+ .+|..++|.+..
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s-~L~~~~~~~~~Lrl~~-~~lv~y~P~~~G~Fk~~~l~~ 305 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPS-HFRKVEAVGEYLSLYN-NTLVTLLPLENGLFQMGTLLV 305 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSS-CCCCCCSCCCCEEESS-SEEEEEETTTTCEEEEEEEEC
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCcccccc-ccCcccCcchhHhhee-eEEEEEecCCCCeEEEEEEEE
Confidence 35789999999999999999999988665431000 000 0111 1 1 3555444 567899998854
No 399
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=36.54 E-value=8.2 Score=20.38 Aligned_cols=8 Identities=63% Similarity=0.941 Sum_probs=4.5
Q ss_pred CCCCCCCC
Q 009188 4 PLPSEGDE 11 (540)
Q Consensus 4 ~~~~~~~~ 11 (540)
|-|||+||
T Consensus 12 pnpregdw 19 (36)
T 4b2u_A 12 PNPREGDW 19 (36)
T ss_dssp CCGGGCCS
T ss_pred cCCCccCe
Confidence 45556655
No 400
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=35.45 E-value=1.1e+02 Score=21.32 Aligned_cols=92 Identities=15% Similarity=0.056 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHH-H-HHHHHHhcCChHHHHHHhccc-CCCChhhHhhHHHHHhhhhh
Q 009188 24 EFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMV-N-LFTQQILDGHWDESLATLSKI-GLVDESVVKSASFLILEQKF 100 (540)
Q Consensus 24 e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~-~-~~~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~l~~~~~ 100 (540)
....+...++....|.++...+++=-....+.... . .-.-....|+|++|+..+... ...+... . .+...-
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----~~~~~a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-K-----GYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-H-----HHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH-H-----HHHHHH
Confidence 34455556666666888887777644333222221 1 112345679999998887764 2212111 1 111111
Q ss_pred hhcccccchhHHHHHHHhhcc
Q 009188 101 FELLDAEKVMDALKTLRAEIA 121 (540)
Q Consensus 101 lell~~~~~~~a~~~l~~~~~ 121 (540)
.-+...++.++|...+++-+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 112245788899988886543
No 401
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=33.09 E-value=1.4e+02 Score=21.79 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=9.5
Q ss_pred cEEEEeeCCCcEEEEE
Q 009188 459 AFIASGSEDSQVYIWH 474 (540)
Q Consensus 459 ~~l~s~s~dg~i~iwd 474 (540)
.+.+.--.||.+.+|+
T Consensus 86 ~~~l~Lq~dGNlvly~ 101 (111)
T 3mez_A 86 NYAATLGPDQHVTIYG 101 (111)
T ss_dssp CCEEEECTTSCEEEEC
T ss_pred CEEEEECCCCeEEEec
Confidence 3455555666666665
No 402
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=32.35 E-value=54 Score=21.42 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCCCC-chHHHHHHHHHHHhhcChHHHHHHHHHhcCCcc
Q 009188 15 GPAGVI-KRVEFVRIIAKALYSLGYTKSGAHLEEESGIPL 53 (540)
Q Consensus 15 ~~~~~~-~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~ 53 (540)
.+++.| +|+.+.|||+--|.==||...|..|..+-+..-
T Consensus 8 ~~~~~iK~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 8 DPSNLVKNREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred CchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 444444 478889999998988899999999999887543
No 403
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=32.31 E-value=1.1e+02 Score=23.75 Aligned_cols=92 Identities=11% Similarity=0.010 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHHH--HHHHHHhcCChHHHHHHhccc-CCCChhhHhhHHHHHhhhh
Q 009188 23 VEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVN--LFTQQILDGHWDESLATLSKI-GLVDESVVKSASFLILEQK 99 (540)
Q Consensus 23 ~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~~--~~~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~l~~~~ 99 (540)
+.+..+-..+++..-|.++...+++=-.+.-+...+- .-.-....|+|++|+..+... ...+... . .+..+-.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~--~~~~lg~- 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS-K--AWSRLGL- 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H--HHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-H--HHHHHHH-
Confidence 3444455555555568888888776544433333211 113345789999998888764 2222111 1 1111111
Q ss_pred hhhcccccchhHHHHHHHhhc
Q 009188 100 FFELLDAEKVMDALKTLRAEI 120 (540)
Q Consensus 100 ~lell~~~~~~~a~~~l~~~~ 120 (540)
-+...++.++|+..+++-+
T Consensus 88 --~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 88 --ARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp --HHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHccCHHHHHHHHHHHH
Confidence 1234588889999888643
No 404
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.15 E-value=1.5e+02 Score=21.75 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=20.3
Q ss_pred CCEEEEEecCCeEEEEECCCceEEEee---cCCceeEEEEcCCCCEEEE
Q 009188 372 GKQIITMCKESALLLLDREAKVERYIE---EDQTITSFSLSRDNKFLLV 417 (540)
Q Consensus 372 ~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~ 417 (540)
+.+.+.-..||.+.+++.......... .......+.+..+|++++.
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~ 72 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDIT 72 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEE
Confidence 444444455555666554211111111 1112245566666666554
No 405
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=30.56 E-value=1.7e+02 Score=21.78 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=7.3
Q ss_pred EEEEcCCCCEEEE
Q 009188 405 SFSLSRDNKFLLV 417 (540)
Q Consensus 405 ~~~~s~~~~~l~~ 417 (540)
.+.+..+|++++.
T Consensus 64 ~l~l~~dGNLVl~ 76 (119)
T 1b2p_A 64 RAVLQPDGVLVVI 76 (119)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEccCCEEEEE
Confidence 4555666665554
No 406
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=30.53 E-value=58 Score=26.71 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHhhcChHH-HHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHhcc
Q 009188 21 KRVEFVRIIAKALYSLGYTK-SGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATLSK 79 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~-s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~ 79 (540)
.++.|+.--.+-+.+.||.. |...+-+++||+-.+ .+.+.|..+++.-.++.....+..
T Consensus 17 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~ 81 (211)
T 3him_A 17 AAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITA 81 (211)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999985 899999999998765 357777777766666665555554
No 407
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=30.35 E-value=52 Score=26.67 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHhhcChHH-HHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHH
Q 009188 21 KRVEFVRIIAKALYSLGYTK-SGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDES 73 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~-s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~ 73 (540)
.++.|+.--.+-+.+.||.. |...+-+++|++-.+ ++.+.|..++..-..+..
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 71 (199)
T 3on2_A 13 LRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDALAESGFLRL 71 (199)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999996 999999999998654 245555555554433333
No 408
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=30.23 E-value=63 Score=22.70 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=33.2
Q ss_pred CCCCCCCCcc-------cCCCCCCchHHHHHHHHHHHhhcChHHHHHHHHHhcC
Q 009188 4 PLPSEGDEDV-------IGPAGVIKRVEFVRIIAKALYSLGYTKSGAHLEEESG 50 (540)
Q Consensus 4 ~~~~~~~~~~-------~~~~~~~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~ 50 (540)
++-++||||+ +.+..+-.-..+|....+|...+|..-=..+.++|.+
T Consensus 2 ~~~~~~~e~~~~~~~v~v~pP~d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~ 55 (88)
T 1ug0_A 2 SSGSSGEEDYEQWLEIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKD 55 (88)
T ss_dssp CCCCCCSTHHHHHHTSCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred CCcccccccccccceeeeCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCC
Confidence 5678889998 3333333456788888999999997766666777753
No 409
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=29.76 E-value=3.4e+02 Score=25.19 Aligned_cols=163 Identities=6% Similarity=0.041 Sum_probs=88.8
Q ss_pred cEEEEEeecCC-ceEEEEEecC----CCCCeEEEEEC---cC----CCeEEEee-CCCcEEEEECCCCeEEEEeecC---
Q 009188 254 SAIIWEVDLNG-GVTLKHKLSG----HQKPVSCVSWS---SD----DQQLLTCG-VEEAVRRWDVSSGNCLHVYEKA--- 317 (540)
Q Consensus 254 ~i~iwd~~~~~-~~~~~~~~~~----h~~~v~~l~~s---~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~--- 317 (540)
.|.+||+.+++ .......+.. ....+..+++. |+ +.+...+. ..+.|.|+|+.+++.-+....+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 57788888651 2222223321 13457778877 22 33444333 4567999999998876655210
Q ss_pred ---------------CCcEEEEEEecC----CCEEEEEeCCCcEEEEecC-----Cce----EEEeecc-ccceEEEEEE
Q 009188 318 ---------------GLGLVSCGWHPD----RKWIFSGANDKSICMWELG-----GKE----LECWKGQ-RTLKISDLEV 368 (540)
Q Consensus 318 ---------------~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~-----~~~----~~~~~~~-~~~~v~~i~~ 368 (540)
...+..++.+|+ ++.|+-....+. ++|.+. ... ....-.. ....-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 136778888887 666666555442 233332 111 1111111 1123445667
Q ss_pred c-cCCCEEEEEecCCeEEEEECCC-c----eEEEeecC---CceeEEEEcCCCCEEEE
Q 009188 369 T-SDGKQIITMCKESALLLLDREA-K----VERYIEED---QTITSFSLSRDNKFLLV 417 (540)
Q Consensus 369 ~-~~~~~l~~~~~d~~i~~~d~~~-~----~~~~~~~~---~~i~~~~~s~~~~~l~~ 417 (540)
+ .+|..+++--....|..|+..+ . ......+. ..+..+.+.++|...+.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 5 6777777777888999999876 2 12222222 23456666655544333
No 410
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=29.36 E-value=80 Score=21.03 Aligned_cols=38 Identities=18% Similarity=0.052 Sum_probs=30.3
Q ss_pred CCCCchHHHHHHHHHHHhhcChHHH-----HHHHHHhc-CCccc
Q 009188 17 AGVIKRVEFVRIIAKALYSLGYTKS-----GAHLEEES-GIPLH 54 (540)
Q Consensus 17 ~~~~~~~e~~~li~q~L~e~g~~~s-----~~~L~~Es-~~~~~ 54 (540)
++..+.+++...|-+.|.+..+... -..|++.. |+.+.
T Consensus 9 ~~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs 52 (70)
T 1q1v_A 9 KKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT 52 (70)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS
T ss_pred cCCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh
Confidence 4566899999999999999987543 35588888 88877
No 411
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=29.34 E-value=71 Score=25.10 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=27.3
Q ss_pred hHhhHHHHHhhhhhhhcccccchhHHHHHHHh
Q 009188 87 VVKSASFLILEQKFFELLDAEKVMDALKTLRA 118 (540)
Q Consensus 87 ~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~ 118 (540)
....+.|-++-+-|++|+..+ .++|..++.+
T Consensus 31 EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~ 61 (148)
T 2j49_A 31 ELSYIMYPIFIYLFLNLVAKN-PVYARRFFDR 61 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 445678889999999999999 9999999987
No 412
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=29.11 E-value=1.7e+02 Score=21.29 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=9.1
Q ss_pred EEEEeeCCCcEEEEE
Q 009188 460 FIASGSEDSQVYIWH 474 (540)
Q Consensus 460 ~l~s~s~dg~i~iwd 474 (540)
+.+.-..||.+.+++
T Consensus 84 ~~~~L~ddGNlvly~ 98 (109)
T 3dzw_A 84 YVCVLQKDRNVVIYG 98 (109)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEEeCCCEEEEEC
Confidence 445555666666665
No 413
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=28.18 E-value=42 Score=26.83 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhhcChHHHHHH-----HHHhcCCccc
Q 009188 22 RVEFVRIIAKALYSLGYTKSGAH-----LEEESGIPLH 54 (540)
Q Consensus 22 ~~e~~~li~q~L~e~g~~~s~~~-----L~~Es~~~~~ 54 (540)
.++..+-|++||+..||+..+.+ ++.|||+...
T Consensus 14 ~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 14 MKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 45567889999999999887643 7999997654
No 414
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=27.89 E-value=52 Score=26.99 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHhhcChHH-HHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHh
Q 009188 21 KRVEFVRIIAKALYSLGYTK-SGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATL 77 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~-s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l 77 (540)
.++.|+.--.+-+.+.||.. |...+-+++||+-.+ ++.+.+..+++.--.+.....+
T Consensus 15 ~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~~~~~ 77 (203)
T 3ccy_A 15 IRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERC 77 (203)
T ss_dssp HHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999974 789999999998654 2456666555544444443333
No 415
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.46 E-value=39 Score=27.59 Aligned_cols=59 Identities=7% Similarity=0.070 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHhhcCh-HHHHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHhcc
Q 009188 21 KRVEFVRIIAKALYSLGY-TKSGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATLSK 79 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~-~~s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~ 79 (540)
.++.|+.--.+-+.+.|| .-|...+-+++||+-.+ .+.+.|..++..--.+.....+..
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~ 79 (203)
T 3f1b_A 15 REQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAP 79 (203)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999 46889999999998654 246666666665555555444443
No 416
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=25.84 E-value=42 Score=24.37 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.5
Q ss_pred CCCchHHHHHHHHHHHhhcChHH
Q 009188 18 GVIKRVEFVRIIAKALYSLGYTK 40 (540)
Q Consensus 18 ~~~~~~e~~~li~q~L~e~g~~~ 40 (540)
..++|.||+..|++|-+++++.+
T Consensus 33 ~~~sR~eVvk~lW~YIK~nnLQd 55 (101)
T 1v32_A 33 EMISRYDVSDTIAKYISKEGLLD 55 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCBC
T ss_pred cccCHHHHHHHHHHHHHhhcCcC
Confidence 45899999999999999999864
No 417
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=25.66 E-value=3.9e+02 Score=26.24 Aligned_cols=72 Identities=8% Similarity=-0.042 Sum_probs=45.9
Q ss_pred cCcEEEEEEecCCC--eEEEEeCCCcEEEEEeecCCce-EEEEEe--cCCCCCeE-EEEECcCCCeEEEeeCCCcEEE
Q 009188 231 TDEVWFLQFSHNGK--YLASSSNDRSAIIWEVDLNGGV-TLKHKL--SGHQKPVS-CVSWSSDDQQLLTCGVEEAVRR 302 (540)
Q Consensus 231 ~~~V~~~~~sp~g~--~l~tg~~dg~i~iwd~~~~~~~-~~~~~~--~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~i 302 (540)
....++++....+. .+..|+.+|.|.-..+..+... .....+ .....+|. .|.+++++.+|+.++.++.++|
T Consensus 399 ~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 399 RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 34678888776444 5667899998865555533221 122222 23356785 8999999999998877664444
No 418
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=25.37 E-value=31 Score=22.55 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHhhcChHH
Q 009188 21 KRVEFVRIIAKALYSLGYTK 40 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~ 40 (540)
..+|++.||.+.|+..||+.
T Consensus 61 qakelleliarllqklgykd 80 (96)
T 2jvf_A 61 QAKELLELIARLLQKLGYKD 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 46899999999999999964
No 419
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.32 E-value=40 Score=22.29 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=20.6
Q ss_pred HHHHHHhhcC--hHHHHHHHHHhcCCccc
Q 009188 28 IIAKALYSLG--YTKSGAHLEEESGIPLH 54 (540)
Q Consensus 28 li~q~L~e~g--~~~s~~~L~~Es~~~~~ 54 (540)
+|-|++.+++ +..-...|++||+..+-
T Consensus 28 VVsqc~~qN~~Nl~aC~~~L~qES~kYLY 56 (75)
T 2dae_A 28 VVSRCMLQNNNNLDACCAVLSQESTRYLY 56 (75)
T ss_dssp HHHHHHTTTTSCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCHHHHHHHHHHhccccee
Confidence 4677777776 77788999999975543
No 420
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.25 E-value=43 Score=20.98 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=16.8
Q ss_pred CCchHHHHHHHHHHHhhcChHH
Q 009188 19 VIKRVEFVRIIAKALYSLGYTK 40 (540)
Q Consensus 19 ~~~~~e~~~li~q~L~e~g~~~ 40 (540)
.+..+|.-.-.++-|.|.||..
T Consensus 2 ~~~~ee~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 2 SSGSSGQTAALMAHLFEMGFCD 23 (54)
T ss_dssp CCSSCTTHHHHHHHHHHHTCCC
T ss_pred CCCHHHhhHHHHHHHHHcCCCc
Confidence 4556666777899999999954
No 421
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=24.65 E-value=6e+02 Score=26.32 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=31.7
Q ss_pred EEEEEEecC-CCeEEEEeCCCcEEEEEeec-CCceEEEEEec---CCCCCeEEEEECcC-CCeEEEeeCC
Q 009188 234 VWFLQFSHN-GKYLASSSNDRSAIIWEVDL-NGGVTLKHKLS---GHQKPVSCVSWSSD-DQQLLTCGVE 297 (540)
Q Consensus 234 V~~~~~sp~-g~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~---~h~~~v~~l~~s~~-~~~l~s~~~d 297 (540)
+..++++|. ...++.+...+. ||.... +...+...... .....+..+.++|. +..++.+..+
T Consensus 123 ~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 123 GERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred eeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 556788874 345555553333 444333 23333222111 11245888999884 4456665554
No 422
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=23.98 E-value=6e+02 Score=26.04 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=36.0
Q ss_pred CeEEEEECcCC-CeEEEeeCCCcEEEEECCCCeEEEEeecC-------CCcEEEEEEec-CCCEEEEEe
Q 009188 278 PVSCVSWSSDD-QQLLTCGVEEAVRRWDVSSGNCLHVYEKA-------GLGLVSCGWHP-DRKWIFSGA 337 (540)
Q Consensus 278 ~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~ 337 (540)
.|..|+++|.. ..+.++...+.|..++ ..|+.-..+..+ ...|.+++++| +.+.++++.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 79999999864 4566666566666555 334433333221 24589999998 444555443
No 423
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=23.95 E-value=59 Score=26.24 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHhccc
Q 009188 20 IKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATLSKI 80 (540)
Q Consensus 20 ~~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~l 80 (540)
-.+++|+.--.+-+.+.||.-|...+-+++|++-.+ ++.+.|..++...-++.....+...
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 74 (190)
T 3jsj_A 9 SPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPP 74 (190)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999997789999999998654 2566676666666666665555443
No 424
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.92 E-value=1.9e+02 Score=21.35 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccC---hH-H-HHHHHHHhcCChHHHHHHhccc-CCCChhhHhhHHHHH
Q 009188 22 RVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHS---SM-V-NLFTQQILDGHWDESLATLSKI-GLVDESVVKSASFLI 95 (540)
Q Consensus 22 ~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~---~~-~-~~~~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~l 95 (540)
-.....+-..++...-|.++...+++=-.+.-+. .. . ..-.-....|+|++|+..+... ...+... . +.+ .
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~~~-~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV-K-ALY-R 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH-H-HHH-H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH-H-HHH-H
Confidence 4555666666666777999888888766554442 11 1 1112346789999998887763 2222111 1 111 1
Q ss_pred hhhhhhhcccccchhHHHHHHHhhc
Q 009188 96 LEQKFFELLDAEKVMDALKTLRAEI 120 (540)
Q Consensus 96 ~~~~~lell~~~~~~~a~~~l~~~~ 120 (540)
+- .-+...++.++|...+++-+
T Consensus 105 ~a---~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 105 RS---QALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HH---HHHHHHTCHHHHHHHHHHHH
T ss_pred HH---HHHHHcCCHHHHHHHHHHHH
Confidence 11 11223478889998888654
No 425
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=23.67 E-value=71 Score=25.69 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=45.8
Q ss_pred CCCCchHHHHHHHHHHHhhcChHH-HHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHhcc
Q 009188 17 AGVIKRVEFVRIIAKALYSLGYTK-SGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATLSK 79 (540)
Q Consensus 17 ~~~~~~~e~~~li~q~L~e~g~~~-s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~ 79 (540)
+..-.++.|+.-..+-+.+.||.. |...+-+++|++-.+ .+.+.|..++...-++.....+..
T Consensus 6 ~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~ 74 (195)
T 3ppb_A 6 SKRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQA 74 (195)
T ss_dssp --CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344468999999999999999975 689999999998654 246666666665555555555543
No 426
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=23.56 E-value=56 Score=27.65 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHhhcChH-HHHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHhcc
Q 009188 21 KRVEFVRIIAKALYSLGYT-KSGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATLSK 79 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~-~s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~ 79 (540)
.+++|+.--++-+.|.||. -|...+-+++||+-.+ .+.+.|..+++..-++.....+..
T Consensus 14 ~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~ 78 (231)
T 2qib_A 14 RRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDLADRFVE 78 (231)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999995 5889999999998654 246666666665555555544444
No 427
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=23.31 E-value=44 Score=20.77 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhhc
Q 009188 22 RVEFVRIIAKALYSL 36 (540)
Q Consensus 22 ~~e~~~li~q~L~e~ 36 (540)
++++.+.|+|||+..
T Consensus 2 ~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 457899999999653
No 428
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=23.07 E-value=2.7e+02 Score=24.15 Aligned_cols=97 Identities=6% Similarity=-0.030 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHHHH-------H-HHHHhcCChHHHHHHhccc-CCCChhhHhhHHHH
Q 009188 24 EFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNL-------F-TQQILDGHWDESLATLSKI-GLVDESVVKSASFL 94 (540)
Q Consensus 24 e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~~~-------~-~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~ 94 (540)
++...+..++....|.++...+++.-........... + .-....|++++|+..+... ..............
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4456666777777788887777654332221111110 0 1124567888888776542 11110000000111
Q ss_pred HhhhhhhhcccccchhHHHHHHHhhc
Q 009188 95 ILEQKFFELLDAEKVMDALKTLRAEI 120 (540)
Q Consensus 95 l~~~~~lell~~~~~~~a~~~l~~~~ 120 (540)
.+...-.-+...++.++|+..+.+.+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22222223334577778887777654
No 429
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.70 E-value=1.8e+02 Score=21.00 Aligned_cols=90 Identities=12% Similarity=-0.020 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhcCCcccChHH--HHHHHHHhcCChHHHHHHhccc-CCCChhhHhhHHHHHhhhhhh
Q 009188 25 FVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMV--NLFTQQILDGHWDESLATLSKI-GLVDESVVKSASFLILEQKFF 101 (540)
Q Consensus 25 ~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~--~~~~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~l~~~~~l 101 (540)
+..+-..+++..-|.++...+++=-.+.-+.... ..-.-....|+|++|+..+... ...+... . .+..+- .
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~--~~~~lg---~ 80 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-R--AYIRKA---T 80 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H--HHHHHH---H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-H--HHHHHH---H
Confidence 3444455666666888887777654443333221 1112345679999998887764 2222111 1 011111 1
Q ss_pred hcccccchhHHHHHHHhhc
Q 009188 102 ELLDAEKVMDALKTLRAEI 120 (540)
Q Consensus 102 ell~~~~~~~a~~~l~~~~ 120 (540)
-+...++.++|+..+++-+
T Consensus 81 ~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 81 AQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHH
Confidence 1233478888888887643
No 430
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.18 E-value=35 Score=27.85 Aligned_cols=53 Identities=8% Similarity=0.106 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHH
Q 009188 21 KRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDES 73 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~ 73 (540)
.+++|+.--.+-+.+.||.-|...+-+++||+-.+ .+.+.|..+++.-.++..
T Consensus 16 ~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~ 73 (194)
T 2q24_A 16 NRDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVARL 73 (194)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999998999999999998654 235555555544433333
No 431
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=22.15 E-value=1.1e+02 Score=22.51 Aligned_cols=92 Identities=11% Similarity=-0.047 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCcccChHHHHH--HHHHhcCChHHHHHHhccc-CCCChhhHhhHHHHHhhhh
Q 009188 23 VEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLF--TQQILDGHWDESLATLSKI-GLVDESVVKSASFLILEQK 99 (540)
Q Consensus 23 ~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~~~~--~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~l~~~~ 99 (540)
.+...+-..+++..-|.++...+++=....-+....-.. .-....|++++|+..+.+. ...++.. . ..+ ..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-~-~~~----~l 91 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI-A-VHA----AL 91 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-HHH----HH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H-HHH----HH
Confidence 345666667777777888888887655544443332222 2345679999998888764 2222211 1 111 11
Q ss_pred hhhcccccchhHHHHHHHhhc
Q 009188 100 FFELLDAEKVMDALKTLRAEI 120 (540)
Q Consensus 100 ~lell~~~~~~~a~~~l~~~~ 120 (540)
-.-+...|+.++|+..+++-+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 111223477888888888644
No 432
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=21.86 E-value=2.1e+02 Score=24.91 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=25.8
Q ss_pred HhhcChHHHHHHHHHhcCCcccChHHHH--HHHHHhcCChHHHHHHhccc
Q 009188 33 LYSLGYTKSGAHLEEESGIPLHSSMVNL--FTQQILDGHWDESLATLSKI 80 (540)
Q Consensus 33 L~e~g~~~s~~~L~~Es~~~~~~~~~~~--~~~~i~~g~w~~~~~~l~~l 80 (540)
+....+.++...+++=-...-+...... -.-.+..|++++|+..+..+
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3334455555555544333333332221 23345678888888888876
No 433
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=21.84 E-value=63 Score=21.81 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.2
Q ss_pred CchHHHHHHHHHHHhhc
Q 009188 20 IKRVEFVRIIAKALYSL 36 (540)
Q Consensus 20 ~~~~e~~~li~q~L~e~ 36 (540)
.+++++...|+|||+..
T Consensus 5 ~~~K~la~sIi~FL~~~ 21 (74)
T 2lxb_A 5 ASKEEIAALIVNYFSSI 21 (74)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 46788999999999764
No 434
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=21.81 E-value=1.9e+02 Score=19.70 Aligned_cols=88 Identities=11% Similarity=-0.026 Sum_probs=44.5
Q ss_pred HHHHHHhhcChHHHHHHHHHhcCCcccChHH--HHHHHHHhcCChHHHHHHhccc-CCCChh-hHhhHHHHHhhhhhhhc
Q 009188 28 IIAKALYSLGYTKSGAHLEEESGIPLHSSMV--NLFTQQILDGHWDESLATLSKI-GLVDES-VVKSASFLILEQKFFEL 103 (540)
Q Consensus 28 li~q~L~e~g~~~s~~~L~~Es~~~~~~~~~--~~~~~~i~~g~w~~~~~~l~~l-~~~~~~-~~~~~~~~l~~~~~lel 103 (540)
+-.-++....|.++...+++=..+..+.... ..-.-....|+|++|+..+... ...+.. ... .+...-.-+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-----~~~~l~~~~ 86 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD-----VWAAKADAL 86 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH-----HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH-----HHHHHHHHH
Confidence 3334445555777776666543322222221 1112335679999998887764 222210 111 111111223
Q ss_pred ccc-cchhHHHHHHHhhc
Q 009188 104 LDA-EKVMDALKTLRAEI 120 (540)
Q Consensus 104 l~~-~~~~~a~~~l~~~~ 120 (540)
... ++.++|+..+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 456 78888988888644
No 435
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=21.58 E-value=1.9e+02 Score=20.25 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhcCCcccChH--HHHHHHHHhcCChHHHHHHhcccC-CCChhhHhhHHHHHhhhhhhh
Q 009188 26 VRIIAKALYSLGYTKSGAHLEEESGIPLHSSM--VNLFTQQILDGHWDESLATLSKIG-LVDESVVKSASFLILEQKFFE 102 (540)
Q Consensus 26 ~~li~q~L~e~g~~~s~~~L~~Es~~~~~~~~--~~~~~~~i~~g~w~~~~~~l~~l~-~~~~~~~~~~~~~l~~~~~le 102 (540)
..+...++...-|.++...+++-.....+... ...-.-....|++++|+..+...- ..+... . . +...-. -
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~-~~~la~---~ 86 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-E-A-WYNLGN---A 86 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-H-HHHHHH---H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH-H-H-HHHHHH---H
Confidence 34444455555577777766654333222221 111233457899999988877642 111111 0 0 011111 1
Q ss_pred cccccchhHHHHHHHhhc
Q 009188 103 LLDAEKVMDALKTLRAEI 120 (540)
Q Consensus 103 ll~~~~~~~a~~~l~~~~ 120 (540)
+...++.++|...+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 123578888888887643
No 436
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=21.11 E-value=4.9e+02 Score=23.99 Aligned_cols=145 Identities=8% Similarity=0.053 Sum_probs=86.1
Q ss_pred CcCCCeEEEeeCCCcEEEEECCC---------CeEEEEeecCCCcEEEEEEecCCCEEEEEeCCCcEEEEec---CC---
Q 009188 285 SSDDQQLLTCGVEEAVRRWDVSS---------GNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL---GG--- 349 (540)
Q Consensus 285 s~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~---~~--- 349 (540)
-|+...+++.+.+|.|+--.+.+ |.....++ ....+..+........++..+..|.++-+.. ..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999998765421 22223332 2445666655556667777788887665543 21
Q ss_pred ---ceE-EEe-eccccceEEEEEEc---cCCCEEEEEecCCeEEEEECCCce------EE--EeecCCceeEEEEcCCCC
Q 009188 350 ---KEL-ECW-KGQRTLKISDLEVT---SDGKQIITMCKESALLLLDREAKV------ER--YIEEDQTITSFSLSRDNK 413 (540)
Q Consensus 350 ---~~~-~~~-~~~~~~~v~~i~~~---~~~~~l~~~~~d~~i~~~d~~~~~------~~--~~~~~~~i~~~~~s~~~~ 413 (540)
+.. ... .-.....|.++... .++.+++.++..|.++...+..-. .. .......+..+.......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR 162 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc
Confidence 111 111 11122345555443 245689999999999988754311 11 112345555555555666
Q ss_pred EEEEEecCCeEEEEEec
Q 009188 414 FLLVNLLNQEIHLWNIE 430 (540)
Q Consensus 414 ~l~~~~~dg~i~i~d~~ 430 (540)
.++..+.+|.+..++..
T Consensus 163 ~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred eEEEEeCCCeEEEEEcc
Confidence 78888889988888764
No 437
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=21.09 E-value=16 Score=30.24 Aligned_cols=52 Identities=6% Similarity=0.135 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHH
Q 009188 21 KRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDE 72 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~ 72 (540)
.+++|+.--.+-+.+.||.-|...+-+++||.-.+ .+.+.|..+++...++.
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~ 70 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRR 70 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999988899999999998654 23555555554433333
No 438
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.89 E-value=35 Score=23.28 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhc-ChHHHHHHHHHhcCCccc
Q 009188 23 VEFVRIIAKALYSL-GYTKSGAHLEEESGIPLH 54 (540)
Q Consensus 23 ~e~~~li~q~L~e~-g~~~s~~~L~~Es~~~~~ 54 (540)
++|+.+|-++..+. ||.-|...|.++.|++..
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~ 39 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIY 39 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHH
Confidence 44445555555554 999999999999999644
No 439
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=20.40 E-value=75 Score=25.84 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHhhcChH-HHHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHhcc
Q 009188 21 KRVEFVRIIAKALYSLGYT-KSGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATLSK 79 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~-~s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~ 79 (540)
.++.|+.--.+-+.+.||. -|...+.+++||+-.+ ++.+.|..+++..-.+.....+..
T Consensus 18 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~ 82 (206)
T 3kz9_A 18 RKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSD 82 (206)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999998 7889999999998654 245566555555444444444433
No 440
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=20.34 E-value=49 Score=27.36 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=43.6
Q ss_pred CCCCchHHHHHHHHHHHhhcChH-HHHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHhc
Q 009188 17 AGVIKRVEFVRIIAKALYSLGYT-KSGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATLS 78 (540)
Q Consensus 17 ~~~~~~~e~~~li~q~L~e~g~~-~s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~ 78 (540)
+..-.++.|+.-.++-+.+.||. -|...+-+++||+-.+ .+.+.|..+++.--++.....+.
T Consensus 28 ~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~ 95 (218)
T 3dcf_A 28 TGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFH 95 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999997 5789999999998654 24555655555544444444433
No 441
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=20.33 E-value=1.1e+02 Score=25.07 Aligned_cols=60 Identities=8% Similarity=0.105 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHhhcChHH-HHHHHHHhcCCcccC-----hHHHHHHHHHhcCChHHHHHHhccc
Q 009188 21 KRVEFVRIIAKALYSLGYTK-SGAHLEEESGIPLHS-----SMVNLFTQQILDGHWDESLATLSKI 80 (540)
Q Consensus 21 ~~~e~~~li~q~L~e~g~~~-s~~~L~~Es~~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~l 80 (540)
.+++|+.--.+-+.+.||.. |...+-+++||+-.+ .+.+.|..+++...++.....+...
T Consensus 11 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 76 (216)
T 3s5r_A 11 TRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEP 76 (216)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999985 899999999998654 3577777788777777776666554
Done!