BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009189
         (540 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr-
           Ring (Triad) Motif
          Length = 60

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 285 YIAVHTKHCPKCQKLVEKNGGCNLVSC---ICGQPFCWLC-GAATGSDHTWTSIAGHSCG 340
           +IA +TK CPKC   +EK+GGCN + C    C   FCW+C G        W     ++C 
Sbjct: 1   WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAW-----YNCN 55

Query: 341 RYKE 344
           RY E
Sbjct: 56  RYNE 59


>pdb|1WIM|A Chain A, Solution Structure Of The Ring Finger Domain Of The Human
           Ubcm4-Interacting Protein 4
          Length = 94

 Score = 36.2 bits (82), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 133 CNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKC--NAICDES 189
           C +C  +  +E++TT+  C   FC  C  ++  + I EG    I+C +  C       E+
Sbjct: 8   CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67

Query: 190 KIRCLVRARDSDLADKFDRFMLE 212
           +I C+V A   ++  ++ +   E
Sbjct: 68  EIECMVAA---EIMQRYKKLQFE 87


>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
           Tripartite Motif-containing Protein 31
          Length = 73

 Score = 30.0 bits (66), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 133 CNICFDDVSLEEITTMDCGHYFCNSCWTE 161
           C IC D   L++  T+DCGH FC  C T+
Sbjct: 23  CPICLD--ILQKPVTIDCGHNFCLKCITQ 49


>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Of Tripartite Motif-Containing Protein 5
          Length = 85

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 133 CNICFDDVSLEEITTMDCGHYFCNSCWT-EHFIVKINEGQSRRITC 177
           C IC +   L +  ++DCGH FC +C T  H    +++G+S    C
Sbjct: 22  CPICLE--LLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVC 65


>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
           Tripartite Motif-containing Protein 31
          Length = 63

 Score = 30.0 bits (66), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 133 CNICFDDVSLEEITTMDCGHYFCNSCWTE 161
           C IC D   L++  T+DCGH FC  C T+
Sbjct: 23  CPICLD--ILQKPVTIDCGHNFCLKCITQ 49


>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
           Protein 183-Like 1
          Length = 81

 Score = 28.9 bits (63), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 133 CNICFDDVSLEEITTMDCGHYFCNSCWTEHF 163
           C IC    + +      C HYFC SC  EHF
Sbjct: 18  CFICRQ--AFQNPVVTKCRHYFCESCALEHF 46


>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
           2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
           Ncfm At 2.15 A Resolution
 pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
           2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
           Ncfm At 2.15 A Resolution
          Length = 533

 Score = 28.5 bits (62), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 320 LCGAATGSDHTWTSIAGHSCGRYKEDREKETESAKRSLERYIHYYSRYEAHRDSSKLESK 379
           L     GSD  +  IA        +      ++ K   +   HYYS  + +R + K+  K
Sbjct: 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAXQAPKDETDTNTHYYSLIDIYRLAEKIYGK 459

Query: 380 -MKETMEDNIKILEECSTASSKDFVWLFNGVDRLFRSR----RVLAYSYPFAYYMFDGDL 434
             ++ + +N + ++     + K+ V L +GV   F ++    RV   + P   Y   G  
Sbjct: 460 EFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVG--FGAKPGELRVSQANLPTEDYALIGKQ 517

Query: 435 FADEMTKGEREMKQN 449
             + + +   E KQN
Sbjct: 518 VLELLKEYYEEFKQN 532


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,445,298
Number of Sequences: 62578
Number of extensions: 574516
Number of successful extensions: 1558
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1548
Number of HSP's gapped (non-prelim): 37
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)